7281 139 40 6 chr9 8 1318 -142270126 - L1PBa LINE L1 -4276 2587 1087 2348 158 22 9 chr9 1490 1939 -142269505 + L1MB1 LINE L1 5714 6168 0 1221 140 10 24 chr9 1951 2158 -142269286 - Tigger3(Golem) DNA MER2_type -24 3005 2802 321 153 333 0 chr9 2156 2228 -142269216 - Tigger3(Golem) DNA MER2_type -2932 97 2 * 1839 175 0 7 chr9 2543 2834 -142268610 - AluJb SINE Alu -23 289 1 359 294 73 0 chr9 4174 4283 -142267161 + L1ME3 LINE L1 5965 6081 -81 2006 105 28 65 chr9 4342 4665 -142266779 + AluSx SINE Alu 1 311 -1 970 221 114 76 chr9 4780 5282 -142266162 + MER39 LTR ERV1 1 707 0 190 227 0 23 chr9 5387 5431 -142266013 - MER5A DNA MER1_type -21 168 126 369 250 30 54 chr9 5573 5741 -142265703 + L1MC5 LINE L1 7773 7936 -25 192 270 139 70 chr9 5741 5856 -142265588 - MER5B DNA MER1_type -53 125 3 189 311 115 0 chr9 5861 5922 -142265522 - L2 LINE L2 -1 3271 3204 1624 163 20 24 chr9 8858 9152 -142262292 + AluJo SINE Alu 2 294 -18 1671 195 7 3 chr9 9180 9487 -142261957 + AluJb SINE Alu 1 308 -4 194 222 143 0 chr9 10367 10430 -142261014 + MIR SINE MIR 78 149 -113 188 67 33 0 chr9 10478 10508 -142260936 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 1833 168 10 16 chr9 10717 11027 -142260417 + AluJo SINE Alu 1 308 -4 2702 146 17 2 chr9 11171 11638 -142259806 + L1MB1 LINE L1 5695 6168 0 42789 31 21 6 chr9 11749 17813 -142253631 + L1PA3 LINE L1 1 6155 0 25 0 0 0 chr9 17831 17856 -142253588 + AT_rich Low_complexity Low_complexity 1 25 0 2259 85 10 19 chr9 18994 19301 -142252143 + AluSc SINE Alu 1 304 -5 1679 126 72 4 chr9 19865 20128 -142251316 + AluSx SINE Alu 5 285 -27 257 27 54 0 chr9 20150 20187 -142251257 + (TAAAAA)n Simple_repeat Simple_repeat 2 40 0 183 80 0 0 chr9 20679 20704 -142250740 + (A)n Simple_repeat Simple_repeat 1 25 0 185 331 145 8 chr9 21311 21435 -142250009 + L2 LINE L2 2718 2858 -456 222 297 55 78 chr9 21501 21629 -142249815 + L2 LINE L2 2948 3072 -200 193 270 206 40 chr9 21716 21842 -142249602 + L2 LINE L2 3122 3268 -4 2620 55 0 0 chr9 22217 22526 -142248918 - AluY SINE Alu -2 309 1 225 0 0 0 chr9 23538 23563 -142247881 + (A)n Simple_repeat Simple_repeat 1 25 0 587 246 181 0 chr9 25495 25710 -142245734 - MIR SINE MIR 0 262 9 21 0 0 0 chr9 26380 26401 -142245043 + AT_rich Low_complexity Low_complexity 1 21 0 801 175 0 0 chr9 27406 27532 -142243912 + FLAM_A SINE Alu 1 126 -7 1751 78 48 117 chr9 27922 28231 -142243213 + AluSx SINE Alu 1 288 -24 38 22 0 0 chr9 28231 28276 -142243168 + AT_rich Low_complexity Low_complexity 1 45 0 290 164 91 0 chr9 30281 30336 -142241108 + L2 LINE L2 3250 3309 -4 27 0 0 0 chr9 31200 31227 -142240217 + AT_rich Low_complexity Low_complexity 1 27 0 1377 113 120 21 chr9 31390 31673 -142239771 + L1MA9 LINE L1 5997 6307 -5 202 151 0 75 chr9 31762 31815 -142239629 + GA-rich Low_complexity Low_complexity 4 52 0 2355 96 3 0 chr9 33287 33588 -142237856 + AluSx SINE Alu 1 302 -10 259 86 0 0 chr9 33899 33934 -142237510 - U2 snRNA snRNA -153 35 1 809 56 47 0 chr9 34007 34114 -142237330 - L1PA10 LINE L1 -3 6165 6054 31 44 0 0 chr9 34799 34844 -142236600 + AT_rich Low_complexity Low_complexity 1 45 0 2203 115 0 28 chr9 35735 36056 -142235388 + AluSx SINE Alu 1 312 0 1233 168 28 5 chr9 37625 37839 -142233605 + MER20 DNA MER1_type 1 219 0 214 158 0 0 chr9 37873 37911 -142233533 + A-rich Low_complexity Low_complexity 5 42 0 742 251 143 72 chr9 38940 39465 -142231979 + HAL1b LINE L1 77 638 -710 * 745 234 104 57 chr9 39464 39780 -142231664 + HAL1b LINE L1 439 769 -579 12781 95 39 8 chr9 39783 40342 -142231102 + Tigger1 DNA MER2_type 388 928 -1490 2052 103 4 4 chr9 40342 40652 -142230792 - AluSg SINE Alu 0 310 1 12781 95 39 8 chr9 40652 41955 -142229489 + Tigger1 DNA MER2_type 928 2309 -109 1028 134 79 12 chr9 41955 42119 -142229325 - FRAM SINE Alu -4 172 1 691 183 0 0 chr9 42123 42238 -142229206 + Tigger1 DNA MER2_type 2304 2418 0 705 167 30 8 chr9 42242 42374 -142229070 - MER5A DNA MER1_type -23 166 32 456 123 0 0 chr9 42436 42509 -142228935 + (TG)n Simple_repeat Simple_repeat 2 74 0 1929 120 4 4 chr9 42511 42786 -142228658 - AluSx SINE Alu -37 275 1 1451 145 9 0 chr9 43638 43866 -142227578 - MER2 DNA MER2_type -115 230 1 299 189 68 14 chr9 44889 44963 -142226481 - L2 LINE L2 -4 3309 3232 2009 82 0 0 chr9 46006 46262 -142225182 + AluY SINE Alu 41 296 -15 2253 107 0 3 chr9 47198 47506 -142223938 + AluSc SINE Alu 2 308 -1 26 64 0 0 chr9 47886 47933 -142223511 + AT_rich Low_complexity Low_complexity 1 47 0 21 0 0 0 chr9 48072 48093 -142223351 + AT_rich Low_complexity Low_complexity 1 21 0 328 183 112 52 chr9 48454 48624 -142222820 - L1ME LINE L1 -356 5806 5638 233 288 137 0 chr9 48987 49060 -142222384 - L2 LINE L2 -32 3281 3199 390 306 133 43 chr9 49280 49535 -142221909 - L2 LINE L2 -475 2839 2562 212 325 12 12 chr9 50570 50650 -142220794 - MIR SINE MIR -58 150 71 968 272 99 10 chr9 52069 52502 -142218942 - L1ME3A LINE L1 -337 5833 5357 191 106 21 106 chr9 52534 52581 -142218863 - MIR SINE MIR -136 126 84 1261 171 0 18 chr9 53230 53447 -142217997 - AluJo SINE Alu -18 294 82 2187 158 53 44 chr9 53562 54017 -142217427 + L1MB8 LINE L1 5715 6173 -5 2239 117 3 0 chr9 54276 54583 -142216861 - AluSg SINE Alu -2 308 1 733 274 58 14 chr9 54808 55016 -142216428 - MIR SINE MIR -31 231 15 603 189 25 16 chr9 55019 55141 -142216303 - MER58 DNA MER1_type -4 2416 2294 857 196 111 69 chr9 55162 55429 -142216015 + LTR54B LTR ERV1 1 288 -210 1889 143 4 0 chr9 55429 55695 -142215749 + AluSx SINE Alu 1 267 -45 857 196 111 69 chr9 55695 55789 -142215655 + LTR54B LTR ERV1 288 377 -121 453 164 0 133 chr9 55789 55917 -142215527 + MER57A-int LTR ERV1 7425 7535 -2 1020 153 55 92 chr9 55918 56229 -142215215 + MER57A LTR ERV1 1 403 0 400 213 71 50 chr9 56229 56333 -142215111 - MER58 DNA MER1_type -197 144 38 24 0 0 0 chr9 57014 57038 -142214406 + AT_rich Low_complexity Low_complexity 1 24 0 834 206 28 22 chr9 57905 58085 -142213359 - MLT1A1 LTR MaLR 0 365 185 1699 188 0 0 chr9 58224 58506 -142212938 + AluJo SINE Alu 1 282 -30 287 161 0 16 chr9 58514 58576 -142212868 + (TA)n Simple_repeat Simple_repeat 1 61 0 233 238 7 119 chr9 58944 59042 -142212402 - L1MC/D LINE L1 -1895 5913 5836 2273 119 0 0 chr9 59042 59345 -142212099 - AluSq SINE Alu -10 303 1 233 238 7 119 chr9 59345 59397 -142212047 - L1MC/D LINE L1 -1972 5836 5780 22 35 0 0 chr9 59624 59653 -142211791 + AT_rich Low_complexity Low_complexity 1 29 0 2035 153 3 3 chr9 59938 60246 -142211198 + AluSx SINE Alu 1 308 -4 2173 108 142 16 chr9 60562 60885 -142210559 - THE1B LTR MaLR 0 364 1 11972 90 25 15 chr9 60885 62449 -142208995 - THE1B-int LTR MaLR 0 1580 1 2374 114 76 15 chr9 62449 62792 -142208652 - THE1B LTR MaLR 0 364 1 253 253 0 36 chr9 63025 63108 -142208336 + (TATATG)n Simple_repeat Simple_repeat 1 80 0 26 0 0 0 chr9 63252 63278 -142208166 + AT_rich Low_complexity Low_complexity 1 26 0 410 253 110 38 chr9 63278 63515 -142207929 + L1ME LINE L1 5546 5799 -322 2644 200 80 11 chr9 64487 65123 -142206321 - L1MC4a LINE L1 -3 7805 7126 616 298 91 5 chr9 65138 65336 -142206108 - L1ME1 LINE L1 -5 6161 5947 186 121 35 35 chr9 65717 65775 -142205669 + T-rich Low_complexity Low_complexity 4 61 0 438 252 67 118 chr9 65924 66162 -142205282 + MER102a DNA MER1_type 96 321 -9 235 170 19 0 chr9 66164 66217 -142205227 + (TA)n Simple_repeat Simple_repeat 1 54 0 1697 243 62 51 chr9 66514 67122 -142204322 - HAL1 LINE L1 -296 2211 1597 317 270 26 12 chr9 67129 67232 -142204212 - MLT1I LTR MaLR -5 445 324 2301 106 0 0 chr9 67525 67828 -142203616 - AluSg SINE Alu -7 303 1 1015 91 8 0 chr9 67828 67960 -142203484 - AluSg SINE Alu -177 133 1 3482 262 68 63 chr9 67960 68120 -142203324 - HAL1 LINE L1 -935 1572 1414 2151 165 12 54 chr9 68120 68525 -142202919 + MLT1B LTR MaLR 3 390 0 3482 262 68 63 chr9 68525 69011 -142202433 - HAL1 LINE L1 -1093 1414 932 4926 106 26 16 chr9 69011 69064 -142202380 - L1MA3 LINE L1 -1 6304 6253 2405 74 7 0 chr9 69064 69362 -142202082 - AluSp SINE Alu -12 301 2 4926 106 26 16 chr9 69362 70051 -142201393 - L1MA3 LINE L1 -52 6253 5555 3482 262 68 63 chr9 70051 70966 -142200478 - HAL1 LINE L1 -1575 932 1 610 254 17 86 chr9 71328 71420 -142200024 - MIR SINE MIR -12 250 153 2299 84 0 0 chr9 71420 71724 -142199720 + AluSx SINE Alu 1 304 0 610 254 17 86 chr9 71724 71862 -142199582 - MIR SINE MIR -109 153 35 2964 6 0 0 chr9 72232 72549 -142198895 + AluYb8 SINE Alu 1 317 -1 548 259 41 14 chr9 72549 72696 -142198748 + L2 LINE L2 3122 3272 0 2387 187 24 2 chr9 72725 73142 -142198302 + MSTB LTR MaLR 1 426 0 2389 68 122 12 chr9 73150 73486 -142197958 - THE1C LTR MaLR -2 373 1 1097 230 149 9 chr9 74295 74617 -142196827 + L1ME3A LINE L1 5781 6147 -23 1775 151 3 40 chr9 75862 76186 -142195258 - AluJb SINE Alu 0 312 1 270 311 150 36 chr9 76552 76719 -142194725 + MER5A DNA MER1_type 4 189 0 2710 39 0 3 chr9 77333 77645 -142193799 + AluY SINE Alu 1 311 0 25 0 0 0 chr9 77936 77961 -142193483 + AT_rich Low_complexity Low_complexity 1 25 0 421 170 0 85 chr9 78024 78118 -142193326 - L1MC4 LINE L1 -159 7883 7798 2508 189 9 5 chr9 78130 78563 -142192881 - MER41D LTR ERV1 -7 550 116 24 32 0 0 chr9 78662 78693 -142192751 + AT_rich Low_complexity Low_complexity 1 31 0 711 274 112 70 chr9 78757 79231 -142192213 + MLT1L LTR MaLR 122 615 0 648 281 87 5 chr9 79271 79467 -142191977 - MIR SINE MIR -49 213 2 712 292 72 8 chr9 79671 79907 -142191537 + MIR SINE MIR 2 252 -10 622 301 104 20 chr9 79915 80214 -142191230 - MLT1K LTR MaLR -150 438 115 266 288 104 40 chr9 81763 81888 -142189556 + L2 LINE L2 3180 3312 -1 25 31 0 0 chr9 82050 82082 -142189362 + AT_rich Low_complexity Low_complexity 1 32 0 2403 80 3 0 chr9 82115 82416 -142189028 - AluSp SINE Alu -11 302 1 896 223 129 41 chr9 82777 83095 -142188349 - L2 LINE L2 0 3313 2968 259 315 83 19 chr9 83827 83935 -142187509 - MIR SINE MIR -64 144 30 517 244 93 52 chr9 84135 84307 -142187137 + MIR SINE MIR 63 241 -21 1286 181 49 61 chr9 85476 85802 -142185642 - MER33 DNA MER1_type -2 322 1 2345 51 10 3 chr9 85832 86126 -142185318 - AluSc SINE Alu -13 296 1 1714 153 32 23 chr9 88348 88656 -142182788 + AluJo SINE Alu 1 311 -1 587 283 34 34 chr9 88961 89166 -142182278 + MIR SINE MIR 2 206 -56 542 207 18 0 chr9 89166 89277 -142182167 + Charlie5 DNA MER1_type 2364 2476 -136 479 257 102 58 chr9 89795 90021 -142181423 - MIR SINE MIR -9 253 18 925 261 56 8 chr9 90917 91166 -142180278 - MIR SINE MIR 0 262 2 259 289 48 0 chr9 91189 91272 -142180172 - MIR SINE MIR 0 262 176 2187 126 3 3 chr9 91288 91598 -142179846 + AluSx SINE Alu 1 310 -2 1989 157 0 0 chr9 91715 92014 -142179430 + AluJo SINE Alu 1 299 -13 1784 79 9 0 chr9 92811 93040 -142178404 - AluSg/x SINE Alu 0 312 82 1520 100 27 9 chr9 93410 93630 -142177814 - MER2 DNA MER2_type 0 345 122 2220 97 0 39 chr9 93630 93938 -142177506 + AluSx SINE Alu 1 296 -16 610 286 43 78 chr9 93979 94072 -142177372 - L1ME LINE L1 -298 5823 5728 1768 158 0 29 chr9 94072 94382 -142177062 + AluJo SINE Alu 1 301 -11 610 286 43 78 chr9 94382 94662 -142176782 - L1ME LINE L1 -393 5728 5463 205 355 56 19 chr9 95407 95514 -142175930 - L2 LINE L2 0 3272 3162 264 278 70 35 chr9 95585 95700 -142175744 - MARNA DNA Mariner -91 495 377 384 321 62 33 chr9 96085 96325 -142175119 - MARNA DNA Mariner -321 265 19 1253 280 159 25 chr9 97665 98146 -142173298 - L2 LINE L2 0 3313 2898 2616 100 43 6 chr9 98146 98497 -142172947 - THE1B LTR MaLR 0 364 1 1253 280 159 25 chr9 98497 98958 -142172486 - L2 LINE L2 -415 2898 2228 24 0 0 0 chr9 99052 99076 -142172368 + AT_rich Low_complexity Low_complexity 1 24 0 349 208 38 28 chr9 99094 99200 -142172244 + L1ME4a LINE L1 5942 6048 -73 652 286 156 4 chr9 99500 99731 -142171713 + MLT1I LTR MaLR 137 402 -7 392 313 43 24 chr9 100055 100266 -142171178 - L2 LINE L2 -1369 1945 1731 28 0 0 0 chr9 100545 100573 -142170871 + AT_rich Low_complexity Low_complexity 1 28 0 663 226 14 20 chr9 100667 100813 -142170631 + MLT1C LTR MaLR 321 465 -2 * 1384 228 49 62 chr9 100813 101295 -142170149 - MLT1H LTR MaLR -28 521 1 196 358 74 12 chr9 101479 101560 -142169884 + L3b LINE CR1 1478 1563 -20 321 211 22 56 chr9 101884 101974 -142169470 - MLT1J LTR MaLR 0 511 425 26 0 0 0 chr9 101978 102004 -142169440 + AT_rich Low_complexity Low_complexity 1 26 0 45335 36 2 1 chr9 102004 108151 -142163293 - L1PA4 LINE L1 0 6155 2 663 320 50 60 chr9 108154 108591 -142162853 - MLT1J LTR MaLR -74 437 5 931 275 71 75 chr9 108746 109197 -142162247 - MLT1J2 LTR MaLR -1 449 1 2148 141 0 0 chr9 109473 109779 -142161665 + AluJb SINE Alu 1 306 -6 3564 152 37 19 chr9 110669 111261 -142160183 - MER6A DNA MER2_type -2 603 1 233 236 0 18 chr9 111293 111348 -142160096 + (CA)n Simple_repeat Simple_repeat 2 55 0 704 275 101 9 chr9 111842 112169 -142159275 - L1ME4a LINE L1 -150 5971 5615 553 210 114 54 chr9 112774 112941 -142158503 - L2 LINE L2 0 3313 3137 244 257 100 0 chr9 112939 113009 -142158435 + MIR SINE MIR 116 192 -70 * 4574 122 18 1 chr9 113194 113872 -142157572 - L1MA5A LINE L1 -3 6294 5606 372 219 0 0 chr9 113949 114013 -142157431 - FRAM/FAM SINE Alu -102 64 1 297 274 88 39 chr9 114185 114287 -142157157 + MIR3 SINE MIR 82 188 -20 30 0 0 0 chr9 114575 114605 -142156839 + AT_rich Low_complexity Low_complexity 1 30 0 314 306 209 29 chr9 114609 114815 -142156629 - MIR SINE MIR -12 250 8 2569 42 0 13 chr9 116004 116310 -142155134 + AluY SINE Alu 2 303 -8 340 236 165 16 chr9 116313 116377 -142155067 + MER112 DNA MER1_type 4 57 -203 213 39 0 0 chr9 116377 116403 -142155041 + (CA)n Simple_repeat Simple_repeat 1 26 0 340 236 165 16 chr9 116403 116520 -142154924 + MER112 DNA MER1_type 57 212 -48 323 296 80 65 chr9 116569 116768 -142154676 + L2 LINE L2 3112 3313 0 2076 119 0 10 chr9 117287 117608 -142153836 - AluSx SINE Alu 0 312 1 1825 161 10 3 chr9 118038 118330 -142153114 + AluSx SINE Alu 1 294 -18 1511 154 60 39 chr9 118339 118624 -142152820 + AluJo SINE Alu 1 291 -21 746 191 0 0 chr9 118875 119013 -142152431 - FLAM_A SINE Alu 0 140 3 2235 60 0 14 chr9 119631 119912 -142151532 - AluY SINE Alu -9 302 26 725 189 0 9 chr9 120511 120741 -142150703 + CT-rich Low_complexity Low_complexity 1 227 0 2082 105 0 52 chr9 121703 122028 -142149416 - AluSx SINE Alu -4 308 1 187 315 39 85 chr9 122733 123038 -142148406 - L2 LINE L2 -1218 2096 1806 551 191 29 0 chr9 123752 123857 -142147587 + MIR SINE MIR 89 196 -66 2269 112 0 3 chr9 124068 124373 -142147071 - AluSg SINE Alu -6 304 1 275 276 17 0 chr9 124452 124519 -142146925 - MIR SINE MIR -89 119 51 2248 83 21 3 chr9 124621 124911 -142146533 + AluSx SINE Alu 1 295 -17 409 272 61 50 chr9 126926 127106 -142144338 + MER5A DNA MER1_type 8 189 0 2456 88 0 0 chr9 127486 127794 -142143650 + AluSx SINE Alu 1 308 -4 285 245 158 50 chr9 128447 128586 -142142858 + MIR SINE MIR 36 189 -73 399 246 146 9 chr9 128885 128995 -142142449 + L2 LINE L2 3189 3313 0 967 115 23 152 chr9 129544 129612 -142141832 - MER5A DNA MER1_type 0 189 114 2351 88 3 0 chr9 129612 129917 -142141527 - AluSc SINE Alu -3 306 1 967 115 23 152 chr9 129917 130065 -142141379 - MER5A DNA MER1_type -75 114 1 2417 95 0 0 chr9 130693 130998 -142140446 - AluSx SINE Alu -7 305 1 1735 164 24 7 chr9 131125 131417 -142140027 + AluJo SINE Alu 1 297 -15 420 272 239 9 chr9 131552 131765 -142139679 + MIR SINE MIR 1 262 0 421 271 51 0 chr9 132221 132339 -142139105 + L2 LINE L2 2234 2357 -957 681 238 157 20 chr9 132594 132898 -142138546 + L1MC4a LINE L1 5531 5829 -341 460 213 28 0 chr9 132897 133005 -142138439 + L1ME2 LINE L1 5751 5861 -303 * 811 61 0 0 chr9 133108 133207 -142138237 + AluY SINE Alu 204 302 -9 22 0 0 0 chr9 133410 133432 -142138012 + AT_rich Low_complexity Low_complexity 1 22 0 1410 251 80 20 chr9 133499 134085 -142137359 - L1MEc LINE L1 -3288 2927 2307 386 0 0 39 chr9 134086 134137 -142137307 + (GAAA)n Simple_repeat Simple_repeat 2 50 0 370 157 0 0 chr9 134140 134210 -142137234 + L1PA15 LINE L1 6096 6165 0 2161 206 140 27 chr9 134223 134809 -142136635 + L1ME1 LINE L1 5379 6030 -136 487 196 47 0 chr9 134809 134916 -142136528 + L1MA10 LINE L1 6216 6327 -7 287 290 103 30 chr9 134923 135025 -142136419 - L1MEc LINE L1 -4039 2357 2264 2214 113 0 0 chr9 135025 135325 -142136119 + AluSx SINE Alu 1 300 -12 287 290 103 30 chr9 135325 136155 -142135289 - L1MEc LINE L1 -4132 2264 1248 275 287 0 0 chr9 136699 136786 -142134658 + (TA)n Simple_repeat Simple_repeat 1 87 0 2393 88 0 0 chr9 137027 137332 -142134112 - AluSq SINE Alu -8 305 1 344 364 8 8 chr9 137912 138044 -142133400 - MIR3 SINE MIR -19 189 58 279 0 0 0 chr9 138465 138496 -142132948 + (TGAA)n Simple_repeat Simple_repeat 2 32 0 466 290 45 28 chr9 138525 138701 -142132743 - MER5A DNA MER1_type 0 189 11 2199 130 0 3 chr9 139299 139606 -142131838 - AluJb SINE Alu -6 306 1 408 312 58 56 chr9 139774 140274 -142131170 - L1ME4a LINE L1 -238 5883 5385 4037 169 28 27 chr9 141162 141653 -142129791 - L1MB8 LINE L1 -14 6164 5670 2260 115 0 7 chr9 141653 141958 -142129486 - AluSx SINE Alu -9 303 1 4037 169 28 27 chr9 141958 142216 -142129228 - L1MB8 LINE L1 -508 5670 5414 269 259 0 12 chr9 144214 144238 -142127206 - L1MA10 LINE L1 0 6334 6311 673 264 48 39 chr9 144238 144469 -142126975 - L1ME1 LINE L1 -14 6152 5920 1958 126 10 14 chr9 144491 144784 -142126660 - AluJo SINE Alu -20 292 1 29 47 0 0 chr9 145514 145557 -142125887 + AT_rich Low_complexity Low_complexity 1 43 0 2145 102 3 58 chr9 145781 146106 -142125338 - AluSp SINE Alu -6 307 1 264 122 0 0 chr9 146563 146604 -142124840 + (T)n Simple_repeat Simple_repeat 1 41 0 424 300 40 27 chr9 147111 147261 -142124183 + MIR SINE MIR 20 171 -91 523 197 311 0 chr9 147529 147661 -142123783 + MER5B DNA MER1_type 5 177 -1 25 0 0 0 chr9 147673 147698 -142123746 + AT_rich Low_complexity Low_complexity 1 25 0 2259 97 0 0 chr9 147701 147989 -142123455 - AluSx SINE Alu -24 288 1 2123 127 0 0 chr9 147992 148291 -142123153 - AluSx SINE Alu -13 299 1 1924 138 7 7 chr9 148903 149209 -142122235 - AluJb SINE Alu 0 306 1 1799 153 0 32 chr9 149233 149541 -142121903 + AluJo SINE Alu 1 298 -14 349 20 40 0 chr9 149541 149591 -142121853 + (GAGAA)n Simple_repeat Simple_repeat 1 52 0 183 204 0 0 chr9 149641 149685 -142121759 + GA-rich Low_complexity Low_complexity 3 46 0 2233 283 114 20 chr9 150480 151568 -142119876 - L2 LINE L2 0 3313 2120 301 260 68 0 chr9 151607 151680 -142119764 + MER81 DNA DNA 1 78 -36 438 193 175 0 chr9 151704 151818 -142119626 - L2 LINE L2 -1297 2017 1884 270 179 36 0 chr9 151998 152054 -142119390 + MIR SINE MIR 84 141 -121 181 143 163 20 chr9 152425 152474 -142118970 + L2 LINE L2 3216 3271 -1 409 242 80 106 chr9 152481 152820 -142118624 - MLT2C1 LTR ERVL -1 396 67 * 664 179 23 37 chr9 152675 152858 -142118586 - MLT1E1 LTR MaLR -376 278 46 * 717 207 14 7 chr9 152857 153002 -142118442 - MLT2F LTR ERVL -517 146 1 2029 128 21 0 chr9 153072 153361 -142118083 + AluSx SINE Alu 1 295 -17 270 143 0 0 chr9 153718 153767 -142117677 + (TG)n Simple_repeat Simple_repeat 2 50 0 191 254 110 85 chr9 154265 154383 -142117061 + L2 LINE L2 3187 3307 -6 1476 181 26 32 chr9 154509 154818 -142116626 - AluJo SINE Alu 0 312 6 476 244 122 0 chr9 155224 155347 -142116097 + MIR SINE MIR 11 148 -114 1868 155 0 24 chr9 155347 155501 -142115943 + MER46B DNA MER2_type 1 19 -2712 2216 157 23 0 chr9 155501 155852 -142115592 - L1PB4 LINE L1 0 6156 5798 1868 155 0 24 chr9 155852 156026 -142115418 + MER46B DNA MER2_type 19 196 -40 307 235 133 10 chr9 156044 156142 -142115302 + MIR SINE MIR 148 257 -5 4138 83 13 0 chr9 156674 157205 -142114239 + L1PA14 LINE L1 5624 6161 0 336 228 238 0 chr9 158997 159098 -142112346 + MIR SINE MIR 16 140 -122 233 200 0 0 chr9 159197 159237 -142112207 - MIR SINE MIR -6 256 217 796 191 0 22 chr9 159993 160129 -142111315 + FLAM_A SINE Alu 1 133 0 773 308 76 0 chr9 160421 160658 -142110786 + MIR SINE MIR 6 260 -2 733 276 43 30 chr9 160669 160901 -142110543 - MIR SINE MIR -22 240 6 23 0 0 0 chr9 161708 161731 -142109713 + AT_rich Low_complexity Low_complexity 1 23 0 2072 143 56 30 chr9 161736 162233 -142109211 - L1MC2 LINE L1 0 6344 5752 1482 123 45 18 chr9 162270 162490 -142108954 - MER30 DNA MER1_type 0 230 5 580 278 88 10 chr9 163557 163863 -142107581 - L1ME4a LINE L1 -202 5919 5590 1887 155 3 26 chr9 163882 164191 -142107253 + AluJo SINE Alu 2 303 -9 2374 71 6 52 chr9 164191 164514 -142106930 + AluSp SINE Alu 1 309 -4 346 274 110 51 chr9 164630 164922 -142106522 - L1ME4a LINE L1 -748 5398 5090 183 42 0 0 chr9 165544 165568 -142105876 + (GGAGAA)n Simple_repeat Simple_repeat 3 26 0 398 315 144 27 chr9 166248 166546 -142104898 - L1ME LINE L1 -311 5810 5478 1767 193 34 70 chr9 166671 166978 -142104466 + L1ME1 LINE L1 5594 5880 -286 2418 102 0 0 chr9 166978 167282 -142104162 + AluSx SINE Alu 1 304 -8 1767 193 34 70 chr9 167282 167446 -142103998 + L1ME1 LINE L1 5880 6048 -118 230 243 71 0 chr9 169197 169267 -142102177 + GA-rich Low_complexity Low_complexity 2 76 0 470 322 38 17 chr9 169274 169470 -142101974 - MIR SINE MIR -59 203 3 2174 132 0 0 chr9 170243 170553 -142100891 + AluSx SINE Alu 1 310 -2 244 237 103 52 chr9 170592 170689 -142100755 - MIR3 SINE MIR -10 198 97 324 0 0 0 chr9 170719 170755 -142100689 + (TG)n Simple_repeat Simple_repeat 2 37 0 1370 142 0 5 chr9 171459 171663 -142099781 - AluJb SINE Alu -109 203 1 2413 64 7 3 chr9 171840 172136 -142099308 + AluY SINE Alu 1 297 -14 10681 213 63 13 chr9 172537 174947 -142096497 + L1PA16 LINE L1 3078 5566 -600 1746 152 6 108 chr9 174947 175282 -142096162 + AluJo SINE Alu 1 301 -1 10681 213 63 13 chr9 175282 175916 -142095528 + L1PA16 LINE L1 5566 6166 0 734 303 49 12 chr9 177117 177361 -142094083 + MIR SINE MIR 10 262 0 2494 62 0 10 chr9 177377 177685 -142093759 - AluY SINE Alu -6 305 1 725 188 17 15 chr9 177889 178162 -142093282 + L1MB3 LINE L1 5657 6123 -60 199 267 67 0 chr9 178167 178227 -142093217 - MIR SINE MIR -118 144 81 389 229 59 20 chr9 178556 178709 -142092735 - LTR33A LTR ERVL -25 498 340 843 190 49 33 chr9 178716 178900 -142092544 - MER5A DNA MER1_type 0 189 3 773 236 170 66 chr9 178906 179350 -142092094 - LTR50 LTR ERVL -210 585 17 2541 77 6 0 chr9 179447 179758 -142091686 - AluSp SINE Alu 0 313 1 4660 115 27 3 chr9 179779 180448 -142090996 + L1MA5 LINE L1 5609 6293 -7 529 307 63 31 chr9 180653 180762 -142090682 - L1ME4a LINE L1 -179 5942 5838 2225 98 0 7 chr9 180762 181057 -142090387 - AluSc SINE Alu -16 293 1 529 307 63 31 chr9 181057 181296 -142090148 - L1ME4a LINE L1 -283 5838 5583 264 150 0 0 chr9 182033 182073 -142089371 - Alu SINE Alu -19 283 244 2258 105 3 0 chr9 182086 182381 -142089063 + AluSq SINE Alu 1 296 -17 2199 86 0 7 chr9 182570 182848 -142088596 - AluSq SINE Alu -24 289 14 589 218 58 13 chr9 182917 183073 -142088371 + MLT1E LTR MaLR 1 163 -430 1952 135 7 3 chr9 183104 183400 -142088044 + AluSx SINE Alu 1 297 -15 1222 186 4 52 chr9 183404 183652 -142087792 - AluJo SINE Alu -76 236 1 1699 158 63 26 chr9 185607 185956 -142085488 + L1MA7 LINE L1 5880 6241 -50 525 141 10 10 chr9 185951 186050 -142085394 + L1MA7 LINE L1 6192 6290 -1 * 266 160 64 85 chr9 187157 187251 -142084193 - MLT1K LTR MaLR -16 572 481 1407 205 45 40 chr9 187458 187892 -142083552 + L1MC5 LINE L1 7499 7917 -44 791 274 45 0 chr9 189525 189726 -142081718 - MER63A DNA MER1_type 0 210 1 398 304 142 28 chr9 189781 190028 -142081416 - Charlie8 DNA MER1_type -2141 276 2 314 227 23 34 chr9 190159 190247 -142081197 - Charlie7 DNA MER1_type -2500 112 26 183 333 32 11 chr9 190498 190591 -142080853 + MIR3 SINE MIR 108 202 -6 1691 156 53 11 chr9 191115 191397 -142080047 + AluJo SINE Alu 1 294 -18 324 285 27 97 chr9 192009 192195 -142079249 - MER5A DNA MER1_type -11 178 6 460 344 81 9 chr9 194526 194747 -142076697 + MIR SINE MIR 20 256 -6 2128 136 0 0 chr9 194911 195213 -142076231 + AluSq SINE Alu 1 302 -11 2984 114 21 44 chr9 195285 195319 -142076125 - L1MB3 LINE L1 -11 6172 6139 2380 93 3 0 chr9 195319 195621 -142075823 - AluSg SINE Alu -7 303 1 2984 114 21 44 chr9 195621 196068 -142075376 - L1MB3 LINE L1 -44 6139 5702 327 328 39 56 chr9 196071 196251 -142075193 - MIR SINE MIR -39 223 47 2916 105 36 27 chr9 196929 197367 -142074077 - L1PB3 LINE L1 0 6154 5713 682 260 136 41 chr9 198466 198517 -142072927 - MLT1J1 LTR MaLR -10 440 395 1345 128 11 0 chr9 198517 198704 -142072740 - MER5A DNA MER1_type 0 189 1 682 260 136 41 chr9 198704 199026 -142072418 - MLT1J1 LTR MaLR -55 395 64 1885 155 3 13 chr9 199493 199797 -142071647 - AluJb SINE Alu -11 301 1 472 297 34 7 chr9 200454 200602 -142070842 + MIR SINE MIR 29 180 -82 2270 109 3 6 chr9 201039 201352 -142070092 - AluSq SINE Alu -1 312 1 205 233 233 58 chr9 202575 202747 -142068697 + MIR SINE MIR 49 250 -12 221 240 180 80 chr9 203232 203332 -142068112 + L2 LINE L2 3153 3262 -10 494 239 127 29 chr9 204152 204466 -142066978 - L1ME4a LINE L1 -6 6115 5771 1792 184 3 3 chr9 204749 205058 -142066386 - AluJo SINE Alu -3 309 1 2436 81 0 0 chr9 205420 205716 -142065728 + AluY SINE Alu 1 296 -15 2227 109 3 3 chr9 206904 207206 -142064238 + AluSx SINE Alu 5 306 -6 431 283 17 52 chr9 208909 208932 -142062512 + MIR SINE MIR 93 115 -147 2495 142 60 0 chr9 208932 209334 -142062110 - MSTC LTR MaLR -2 426 1 431 283 17 52 chr9 209334 209483 -142061961 + MIR SINE MIR 115 259 -3 1108 172 8 64 chr9 209773 209974 -142061470 + L1MB2 LINE L1 5933 6119 -52 2350 94 7 0 chr9 209974 210272 -142061172 + AluSx SINE Alu 1 300 -12 1108 172 8 64 chr9 210272 210320 -142061124 + L1MB2 LINE L1 6119 6168 -3 192 212 142 80 chr9 210515 210628 -142060816 + MIR SINE MIR 84 203 -59 312 308 0 0 chr9 210740 210831 -142060613 + L3 LINE CR1 1272 1362 -215 2322 94 0 3 chr9 211617 211914 -142059530 - AluSc SINE Alu -13 296 1 194 217 0 22 chr9 212000 212046 -142059398 - MIR3 SINE MIR -29 179 135 2010 148 3 0 chr9 212440 212744 -142058700 + AluSx SINE Alu 1 305 -7 722 229 71 0 chr9 213155 213338 -142058106 + MER3 DNA MER1_type 9 204 -5 3671 108 19 23 chr9 213806 214335 -142057109 + MER1A DNA MER1_type 1 527 0 234 105 0 0 chr9 214381 214419 -142057025 + (T)n Simple_repeat Simple_repeat 1 38 0 2335 106 0 0 chr9 214562 214864 -142056580 - AluSg SINE Alu -4 306 5 427 304 130 20 chr9 214870 215169 -142056275 - L1ME3 LINE L1 -337 5825 5494 226 225 8 150 chr9 215196 215316 -142056128 - MIR3 SINE MIR -28 180 78 1303 199 68 14 chr9 215318 215599 -142055845 + AluJo SINE Alu 1 296 -16 2103 111 3 24 chr9 216866 217163 -142054281 + AluSq SINE Alu 1 291 -22 234 0 0 0 chr9 217870 217897 -142053547 + MADE1 DNA Mariner 1 27 -53 1946 141 7 7 chr9 219324 219623 -142051821 + AluJb SINE Alu 3 301 -11 1523 193 4 7 chr9 222209 222484 -142048960 - AluJo SINE Alu -10 302 29 2244 90 7 3 chr9 224562 224850 -142046594 + AluSg SINE Alu 1 289 -21 248 258 32 0 chr9 225097 225159 -142046285 - L2 LINE L2 0 3272 3209 1962 112 0 0 chr9 226150 226410 -142045034 + AluSq SINE Alu 1 260 -53 1260 215 72 99 chr9 226566 227120 -142044324 - MLT1F1 LTR MaLR 0 567 29 2321 104 3 3 chr9 227293 227602 -142043842 - AluSc SINE Alu 0 309 1 2507 69 0 7 chr9 228347 228653 -142042791 + AluY SINE Alu 1 304 -7 234 91 0 0 chr9 229552 229585 -142041859 + (TC)n Simple_repeat Simple_repeat 2 34 0 1820 128 21 52 chr9 230171 230490 -142040954 - AluJo SINE Alu 0 314 5 2303 122 0 0 chr9 230667 230979 -142040465 + AluSx SINE Alu 1 312 0 276 242 333 0 chr9 231082 231202 -142040242 - MER5A DNA MER1_type 0 189 30 410 276 35 8 chr9 231363 231518 -142039926 + MIR SINE MIR 8 169 -62 189 0 0 0 chr9 231904 231925 -142039519 + (A)n Simple_repeat Simple_repeat 1 21 0 2315 112 0 10 chr9 232134 232446 -142038998 + AluSx SINE Alu 1 309 -3 1551 188 3 30 chr9 232978 233276 -142038168 + AluJo SINE Alu 1 290 -22 339 255 0 21 chr9 235723 235817 -142035627 + MIR3 SINE MIR 95 186 -22 412 239 99 59 chr9 236214 236436 -142035008 + L1ME4a LINE L1 5685 5915 -206 1903 168 0 13 chr9 236451 236760 -142034684 + AluJb SINE Alu 1 305 -7 305 329 264 3 chr9 237010 237391 -142034053 - L2 LINE L2 -223 3049 2575 315 268 12 0 chr9 237766 237848 -142033596 - MIR SINE MIR -149 113 31 849 242 19 53 chr9 239046 239310 -142032134 + MIR SINE MIR 8 262 0 530 183 23 53 chr9 239358 239489 -142031955 - L2 LINE L2 0 3313 3187 30 45 0 0 chr9 240740 240784 -142030660 + AT_rich Low_complexity Low_complexity 1 44 0 2167 96 55 0 chr9 240909 241200 -142030244 - AluSq SINE Alu 0 313 7 445 279 85 42 chr9 241386 241551 -142029893 + MER91A DNA MER1_type 1 172 -24 1943 148 7 3 chr9 241906 242203 -142029241 - AluJb SINE Alu -14 298 1 664 154 36 0 chr9 244892 245002 -142026442 + AluSq SINE Alu 41 154 -159 2156 79 0 8 chr9 245003 245294 -142026150 + AluSx SINE Alu 21 309 0 878 203 89 54 chr9 245385 245701 -142025743 - L1MC5 LINE L1 -182 7779 7453 380 278 71 35 chr9 246057 246226 -142025218 + MIR SINE MIR 34 208 -54 1296 164 80 42 chr9 246325 246554 -142024890 + MER33 DNA MER1_type 1 247 -2338 1996 154 0 13 chr9 246554 246866 -142024578 - AluJo SINE Alu -4 308 1 1296 164 80 42 chr9 246866 246947 -142024497 + MER33 DNA MER1_type 247 323 -1 596 312 63 28 chr9 246964 247281 -142024163 - MER102b DNA MER1_type -8 333 6 244 261 22 80 chr9 247674 247812 -142023632 - MIR3 SINE MIR -3 205 76 2055 137 3 0 chr9 247815 248100 -142023344 + AluJb SINE Alu 1 286 -26 720 183 92 0 chr9 249737 249879 -142021565 - L1MB7 LINE L1 -44 6140 5986 343 285 51 0 chr9 251055 251192 -142020252 - L2 LINE L2 -212 3060 2917 240 192 51 51 chr9 251491 251569 -142019875 - MER5A DNA MER1_type -98 91 14 406 241 76 45 chr9 252107 252307 -142019137 + AluSx SINE Alu 2 197 -105 405 258 111 42 chr9 252307 252490 -142018954 + AluSx SINE Alu 2 197 -105 427 256 110 42 chr9 252490 252921 -142018523 + AluSx SINE Alu 2 204 -98 1795 164 0 11 chr9 252921 253201 -142018243 + AluJo SINE Alu 6 282 -30 225 0 0 0 chr9 253204 253229 -142018215 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2044 143 0 13 chr9 253774 254074 -142017370 + AluJb SINE Alu 1 296 -16 605 254 54 22 chr9 254227 254412 -142017032 + Charlie8 DNA MER1_type 86 276 -2141 2349 93 3 19 chr9 255218 255353 -142016091 + AluSq SINE Alu 1 137 -176 2226 108 10 0 chr9 255353 255649 -142015795 + AluSq SINE Alu 1 299 -14 2349 93 3 19 chr9 255649 255826 -142015618 + AluSq SINE Alu 137 308 -5 1701 185 83 0 chr9 255928 256291 -142015153 - L1MC3 LINE L1 0 7785 7393 324 169 0 101 chr9 256298 256387 -142015057 - L1MB7 LINE L1 -19 6165 6086 255 330 10 0 chr9 256565 256665 -142014779 + MIR SINE MIR 35 135 -73 2488 68 0 0 chr9 256735 257043 -142014401 + AluY SINE Alu 1 308 -3 230 241 0 0 chr9 257086 257140 -142014304 + MER116 DNA Mariner 2 55 -25 798 173 20 0 chr9 257145 257295 -142014149 - MER63B DNA MER1_type 0 434 282 1060 188 73 0 chr9 257295 257513 -142013931 + L1MD3 LINE L1 7730 7963 -32 976 235 91 30 chr9 257515 257813 -142013631 - MER63B DNA MER1_type -118 318 3 24 53 0 0 chr9 257911 257949 -142013495 + AT_rich Low_complexity Low_complexity 1 38 0 1126 140 62 6 chr9 258720 258899 -142012545 - MER5A DNA MER1_type 0 189 1 2253 112 3 0 chr9 259262 259566 -142011878 + AluSx SINE Alu 1 305 -7 2117 127 3 13 chr9 260654 260954 -142010490 - AluSx SINE Alu -15 297 1 446 333 0 0 chr9 261202 261316 -142010128 + MER81 DNA DNA 1 114 0 400 278 21 35 chr9 261612 261665 -142009779 - MIR3 SINE MIR -2 206 154 698 185 204 0 chr9 261665 261693 -142009751 + MER5A DNA MER1_type 1 22 -167 261 0 0 0 chr9 261693 261722 -142009722 + (CAG)n Simple_repeat Simple_repeat 1 29 0 698 185 204 0 chr9 261722 261834 -142009610 + MER5A DNA MER1_type 22 178 -11 1630 134 37 50 chr9 261834 262133 -142009311 + AluJb SINE Alu 1 295 -17 698 185 204 0 chr9 262133 262148 -142009296 + MER5A DNA MER1_type 178 189 0 400 278 21 35 chr9 262148 262238 -142009206 - MIR3 SINE MIR -54 154 65 783 293 120 34 chr9 262749 263561 -142007883 + L2 LINE L2 2432 3312 -1 207 0 0 0 chr9 263922 263945 -142007499 + (T)n Simple_repeat Simple_repeat 1 23 0 2184 121 3 0 chr9 263957 264254 -142007190 + AluSq SINE Alu 1 298 -15 223 298 120 51 chr9 264516 264674 -142006770 + MER5A DNA MER1_type 5 173 -16 217 278 90 62 chr9 264548 264692 -142006752 - MER5A DNA MER1_type -27 162 15 * 1283 152 5 0 chr9 265018 265215 -142006229 + AluJo SINE Alu 114 311 -1 417 191 35 71 chr9 265450 265591 -142005853 - MIR SINE MIR 0 262 127 691 320 39 48 chr9 265889 266404 -142005040 - LTR33 LTR ERVL -4 517 8 315 0 0 0 chr9 267632 267667 -142003777 + (TAG)n Simple_repeat Simple_repeat 1 35 0 230 179 0 15 chr9 267957 268024 -142003420 + (TA)n Simple_repeat Simple_repeat 2 67 0 307 147 0 44 chr9 269040 269108 -142002336 + L1ME4a LINE L1 6056 6120 -1 1586 128 4 32 chr9 269223 269472 -142001972 + AluSx SINE Alu 62 303 -9 1175 222 15 11 chr9 269487 269507 -142001937 + L1MC4 LINE L1 7775 7793 -249 2095 123 0 3 chr9 269507 269799 -142001645 + AluSx SINE Alu 1 291 -21 1175 222 15 11 chr9 269799 270044 -142001400 + L1MC4 LINE L1 7793 8041 -1 299 335 49 18 chr9 270149 270313 -142001131 - MIR SINE MIR -40 222 54 23 33 0 0 chr9 270636 270666 -142000778 + AT_rich Low_complexity Low_complexity 1 30 0 358 205 134 0 chr9 270940 271052 -142000392 + L1ME4a LINE L1 5879 6005 -116 1017 151 0 2 chr9 271991 272651 -141998793 + (CCA)n Simple_repeat Simple_repeat 2 836 0 1113 138 0 0 chr9 272664 273205 -141998239 + (CCA)n Simple_repeat Simple_repeat 1 541 0 226 354 13 0 chr9 273225 273304 -141998140 + MIR SINE MIR 66 145 -63 1873 219 54 46 chr9 273305 273845 -141997599 - LTR55 LTR ERV -4 544 1 262 167 0 0 chr9 273894 273936 -141997508 + 5S rRNA rRNA 1 42 -79 286 290 9 19 chr9 274288 274395 -141997049 + CT-rich Low_complexity Low_complexity 2 107 0 328 333 57 0 chr9 274418 274541 -141996903 + MIR3 SINE MIR 31 160 -48 2128 122 3 0 chr9 274995 275289 -141996155 - AluSx SINE Alu -17 295 1 1964 110 15 15 chr9 275702 275959 -141995485 + AluSx SINE Alu 21 277 -35 315 0 0 0 chr9 275959 275994 -141995450 + (TC)n Simple_repeat Simple_repeat 2 36 0 * 870 83 0 0 chr9 275993 276113 -141995331 + (TA)n Simple_repeat Simple_repeat 1 120 0 1964 110 15 15 chr9 275994 276127 -141995317 + AluSx SINE Alu 276 292 -20 301 205 70 123 chr9 277506 277677 -141993767 + MER103 DNA DNA 3 164 -2 1803 159 23 7 chr9 278312 278614 -141992830 + AluSx SINE Alu 1 307 -5 219 292 22 0 chr9 278835 278924 -141992520 + MIR SINE MIR 81 171 -91 398 174 61 98 chr9 279846 279978 -141991466 - L2 LINE L2 0 3313 3187 345 140 0 0 chr9 280962 281019 -141990425 + (CA)n Simple_repeat Simple_repeat 2 58 0 21 57 0 0 chr9 281639 281674 -141989770 + AT_rich Low_complexity Low_complexity 1 35 0 3550 43 86 0 chr9 281682 282103 -141989341 - L1PA5 LINE L1 0 6154 5698 491 36 0 0 chr9 282103 282159 -141989285 + L1PA5 LINE L1 5654 5709 -445 544 256 145 0 chr9 282227 282434 -141989010 - L1ME3 LINE L1 -2 6160 5924 569 251 74 39 chr9 282435 282666 -141988778 - L1ME3 LINE L1 -279 5883 5645 8724 196 42 51 chr9 282761 283231 -141988213 + L1MB7 LINE L1 3077 3550 -2634 2143 114 0 0 chr9 283231 283512 -141987932 + AluSq SINE Alu 1 281 -32 198 0 0 0 chr9 283515 283537 -141987907 + (TAA)n Simple_repeat Simple_repeat 2 23 0 8724 196 42 51 chr9 283537 284221 -141987223 + L1MB7 LINE L1 3552 4240 -1944 1976 159 0 6 chr9 284221 284535 -141986909 + AluJb SINE Alu 1 312 0 8724 196 42 51 chr9 284535 285958 -141985486 + L1MB7 LINE L1 4240 5624 -560 2105 101 38 7 chr9 285958 286246 -141985198 + AluSq SINE Alu 1 297 -16 8724 196 42 51 chr9 286246 286496 -141984948 + L1MB7 LINE L1 5624 5875 -309 238 266 78 0 chr9 286499 286563 -141984881 - MIR SINE MIR -192 70 2 185 293 86 0 chr9 286639 286697 -141984747 - MIR SINE MIR -198 64 2 202 276 86 0 chr9 286706 286764 -141984680 - MIR SINE MIR -198 64 2 247 271 18 53 chr9 287173 287278 -141984166 - Charlie7 DNA MER1_type -1 2611 2513 213 39 0 0 chr9 287278 287304 -141984140 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 247 271 18 53 chr9 287304 287368 -141984076 - Charlie7 DNA MER1_type -99 2513 2448 204 206 0 0 chr9 287760 287794 -141983650 + (CGTG)n Simple_repeat Simple_repeat 4 37 0 353 338 54 39 chr9 288726 288930 -141982514 + MIR SINE MIR 19 225 -37 1803 130 45 0 chr9 289113 289406 -141982038 + AluSx SINE Alu 1 305 0 2111 109 26 13 chr9 290364 290668 -141980776 - AluSx SINE Alu -4 308 1 748 226 164 47 chr9 294592 294814 -141976630 + L1ME4a LINE L1 5666 5861 -260 2283 96 0 0 chr9 294814 295107 -141976337 + AluSx SINE Alu 12 304 -8 748 226 164 47 chr9 295107 295292 -141976152 + L1ME4a LINE L1 5861 6121 0 22 70 0 0 chr9 295692 295735 -141975709 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr9 296226 296247 -141975197 + AT_rich Low_complexity Low_complexity 1 21 0 729 229 38 0 chr9 296307 296464 -141974980 + MER5B DNA MER1_type 1 163 -15 2138 152 0 0 chr9 296500 296810 -141974634 - AluJb SINE Alu -2 310 1 646 142 21 57 chr9 296811 296952 -141974492 + L1MB4 LINE L1 6045 6180 0 1475 173 51 19 chr9 296986 297299 -141974145 + MER33 DNA MER1_type 2 324 0 2509 68 0 0 chr9 297351 297659 -141973785 + AluYb8 SINE Alu 1 308 -10 271 100 0 0 chr9 297668 297708 -141973736 + L1MB4 LINE L1 6132 6171 -9 1124 123 59 0 chr9 297709 297879 -141973565 + AluJo SINE Alu 125 304 -8 280 304 109 38 chr9 299403 299587 -141971857 + MER117 DNA MER1_type 1 197 0 2052 120 3 0 chr9 301061 301367 -141970077 - AluSx SINE Alu 0 307 1 2030 157 3 0 chr9 302193 302499 -141968945 + AluSx SINE Alu 1 307 -5 1867 126 55 14 chr9 302502 302795 -141968649 + AluSx SINE Alu 3 307 -5 1750 164 7 20 chr9 302969 303274 -141968170 - AluJo SINE Alu -11 301 1 1843 134 22 0 chr9 303615 303891 -141967553 - AluSx SINE Alu -18 294 13 228 204 20 0 chr9 304479 304528 -141966916 + (TA)n Simple_repeat Simple_repeat 1 50 0 29 47 0 0 chr9 306278 306321 -141965123 + AT_rich Low_complexity Low_complexity 1 43 0 1189 142 32 41 chr9 307105 307324 -141964120 + MER20 DNA MER1_type 1 217 -2 268 242 94 94 chr9 307446 307574 -141963870 - MIR SINE MIR -50 212 85 21 0 0 0 chr9 308635 308656 -141962788 + AT_rich Low_complexity Low_complexity 1 21 0 941 261 97 44 chr9 309220 309633 -141961811 - MLT1K LTR MaLR -25 563 129 262 232 58 29 chr9 310236 310305 -141961139 + 7SK RNA RNA 7 77 -116 686 296 16 0 chr9 310307 310496 -141960948 + MER117 DNA MER1_type 5 196 -1 533 289 16 0 chr9 310614 310735 -141960709 + MER96 DNA MER1_type? 50 172 -3 293 246 14 0 chr9 311751 311820 -141959624 - MIR SINE MIR -111 151 82 2123 132 0 3 chr9 312120 312416 -141959028 - AluSx SINE Alu -13 299 5 22 0 0 0 chr9 312570 312592 -141958852 + AT_rich Low_complexity Low_complexity 1 22 0 1728 174 23 7 chr9 312830 313134 -141958310 - AluJo SINE Alu -3 309 1 702 302 60 8 chr9 315803 316051 -141955393 - MIR SINE MIR 0 262 2 1111 263 143 52 chr9 316245 316436 -141955008 - MER21B LTR ERV1 -154 709 537 270 0 0 0 chr9 316436 316466 -141954978 + (TAA)n Simple_repeat Simple_repeat 2 31 0 1111 263 143 52 chr9 316466 316924 -141954520 - MER21B LTR ERV1 -326 537 1 1617 218 40 17 chr9 317608 318127 -141953317 - L1ME1 LINE L1 -28 6138 5441 38 107 0 0 chr9 318905 319055 -141952389 + AT_rich Low_complexity Low_complexity 1 150 0 203 0 37 0 chr9 320136 320163 -141951281 + (TTTCC)n Simple_repeat Simple_repeat 2 29 0 1663 156 13 49 chr9 320195 320503 -141950941 - AluJo SINE Alu -10 302 6 2233 131 12 72 chr9 320563 320968 -141950476 - MLT1B LTR MaLR -7 383 3 2142 117 3 0 chr9 321169 321477 -141949967 + AluSp SINE Alu 1 309 0 340 307 136 6 chr9 321524 321700 -141949744 + MIR SINE MIR 20 218 -44 2172 128 7 0 chr9 323132 323438 -141948006 + AluSx SINE Alu 2 309 -3 1822 162 7 3 chr9 323442 323739 -141947705 + AluJb SINE Alu 1 298 -14 315 167 0 62 chr9 323975 324071 -141947373 - L1MC4 LINE L1 -1339 6703 6614 225 0 0 0 chr9 324078 324103 -141947341 + (T)n Simple_repeat Simple_repeat 1 25 0 1096 176 11 0 chr9 324252 324439 -141947005 + MER5A DNA MER1_type 1 189 0 461 253 15 32 chr9 324521 324679 -141946765 - MIR SINE MIR -56 152 28 2142 148 0 0 chr9 325523 325827 -141945617 - AluSx SINE Alu -8 304 1 444 132 15 0 chr9 325829 325897 -141945547 - AluJo SINE Alu -178 134 66 31 26 0 0 chr9 325909 325947 -141945497 + AT_rich Low_complexity Low_complexity 1 38 0 1556 135 135 17 chr9 326302 326598 -141944846 + MER44D DNA MER2_type 1 601 -8 574 203 104 12 chr9 327253 327313 -141944131 - MER5A DNA MER1_type -3 186 133 2001 111 3 51 chr9 327313 327629 -141943815 + AluJb SINE Alu 1 301 -11 574 203 104 12 chr9 327629 327731 -141943713 - MER5A DNA MER1_type -56 133 9 213 65 0 0 chr9 327868 327899 -141943545 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 298 113 75 0 chr9 328011 328064 -141943380 - L2 LINE L2 0 3313 3257 392 216 18 9 chr9 328209 328320 -141943124 + L1MB8 LINE L1 6064 6175 -3 760 249 72 17 chr9 329299 329536 -141941908 + MIR SINE MIR 2 251 -11 366 275 36 22 chr9 329685 329823 -141941621 + MIR3 SINE MIR 30 169 -39 932 263 22 0 chr9 329913 330141 -141941303 - MIR SINE MIR -29 233 1 813 234 202 55 chr9 330151 330586 -141940858 - MLT1J LTR MaLR -12 499 1 1832 156 10 10 chr9 330629 330917 -141940527 + AluJb SINE Alu 1 288 -24 311 150 62 0 chr9 331542 331612 -141939832 - MLT1G LTR MaLR -5 590 482 577 267 241 12 chr9 331803 332156 -141939288 - MLT1G LTR MaLR -196 394 1 270 192 55 27 chr9 332192 332265 -141939179 - MIR SINE MIR -70 192 118 646 238 70 70 chr9 333348 333628 -141937816 - L1MEd LINE L1 -4897 1222 940 2030 159 0 6 chr9 333628 333942 -141937502 - AluJb SINE Alu 0 312 1 646 238 70 70 chr9 333942 333989 -141937455 - L1MEd LINE L1 -5178 941 895 578 308 81 65 chr9 334009 334913 -141936531 - L1MEd LINE L1 -5191 928 11 435 303 86 6 chr9 334963 335138 -141936306 + MIR SINE MIR 49 237 -25 908 181 6 6 chr9 335211 335371 -141936073 + FRAM SINE Alu 1 160 -6 387 302 0 9 chr9 335399 335515 -141935929 - MER5B DNA MER1_type -58 120 6 197 95 0 24 chr9 336043 336085 -141935359 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 24 0 0 0 chr9 337282 337306 -141934138 + AT_rich Low_complexity Low_complexity 1 24 0 319 222 72 105 chr9 338077 338230 -141933214 + L2 LINE L2 3166 3313 0 1321 158 59 65 chr9 338255 338332 -141933112 - MER33 DNA MER1_type -2263 322 246 2037 137 0 14 chr9 338332 338624 -141932820 + AluJb SINE Alu 1 288 -24 1321 158 59 65 chr9 338624 338868 -141932576 - MER33 DNA MER1_type -2339 246 3 2347 86 0 0 chr9 339635 339925 -141931519 - AluSx SINE Alu -10 302 13 2259 56 3 25 chr9 339981 340311 -141931133 + AluY SINE Alu 2 325 0 1871 158 36 7 chr9 340315 340618 -141930826 + AluJo SINE Alu 1 312 0 269 307 70 26 chr9 341076 341190 -141930254 + MIR SINE MIR 29 147 -61 1090 221 45 5 chr9 343722 343944 -141927500 + AluJo SINE Alu 2 232 -80 581 186 57 44 chr9 344612 344778 -141926666 + MLT1H LTR MaLR 66 242 -307 570 226 17 0 chr9 344779 344894 -141926550 - MER45A DNA AcHobo -1 177 61 283 340 107 15 chr9 345205 345402 -141926042 - MIR SINE MIR -23 239 25 2281 103 0 0 chr9 345803 346093 -141925351 - AluSc SINE Alu -14 295 6 354 313 157 35 chr9 346396 346626 -141924818 + MIR SINE MIR 5 262 0 3671 162 15 5 chr9 347022 347613 -141923831 + MER50 LTR ERV1 1 597 -137 2248 90 66 0 chr9 347613 347945 -141923499 + MER4E LTR ERV1 1 354 -425 1639 143 0 8 chr9 347947 348214 -141923230 - AluSx SINE Alu 0 306 42 325 43 0 0 chr9 348214 348261 -141923183 + AluSp/q SINE Alu 253 299 -4 2363 90 0 7 chr9 348339 348639 -141922805 + AluSx SINE Alu 1 298 -14 885 125 42 0 chr9 351022 351166 -141920278 - AluSq SINE Alu -12 301 152 280 221 26 13 chr9 351341 351418 -141920026 - MLT1K LTR MaLR -2 586 509 207 271 21 42 chr9 351569 351665 -141919779 - MIR SINE MIR -101 161 68 186 365 129 0 chr9 352797 352882 -141918562 + L3 LINE CR1 1432 1527 -50 2180 136 48 8 chr9 353023 353375 -141918069 - MER47A DNA MER2_type 0 366 1 203 27 0 81 chr9 353381 353418 -141918026 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 845 107 0 0 chr9 353849 353961 -141917483 + FRAM SINE Alu 52 163 -13 358 305 94 24 chr9 354496 354709 -141916735 - MIR SINE MIR -3 259 32 2454 169 69 9 chr9 354913 355374 -141916070 + MER44D DNA MER2_type 59 602 -3 472 262 7 35 chr9 355394 355535 -141915909 - MER5B DNA MER1_type -22 156 20 287 349 0 0 chr9 355587 355696 -141915748 + MIR SINE MIR 84 192 -70 418 253 108 6 chr9 356366 356532 -141914912 + MIR SINE MIR 60 242 -20 793 261 48 102 chr9 357197 357395 -141914049 + MLT1K LTR MaLR 74 281 -307 563 173 58 14 chr9 357395 357534 -141913910 - L1MB8 LINE L1 -1 6177 6033 793 261 48 102 chr9 357534 357691 -141913753 + MLT1K LTR MaLR 281 395 -193 2357 101 10 0 chr9 357691 357998 -141913446 + AluSx SINE Alu 1 310 -2 793 261 48 102 chr9 357998 358161 -141913283 + MLT1K LTR MaLR 395 565 -23 192 125 0 0 chr9 358443 358475 -141912969 + (CAT)n Simple_repeat Simple_repeat 2 33 0 1064 245 4 16 chr9 358481 358730 -141912714 - MIR SINE MIR -15 247 2 2223 133 23 8 chr9 359274 359626 -141911818 + MER47A DNA MER2_type 1 357 -9 277 319 81 56 chr9 360578 360738 -141910706 + MIR SINE MIR 34 197 -65 276 233 200 25 chr9 361002 361122 -141910322 + MIR3 SINE MIR 6 146 -62 262 316 34 34 chr9 361168 361285 -141910159 + L2 LINE L2 3197 3313 0 564 149 0 0 chr9 361462 361549 -141909895 + MER53 DNA DNA 3 89 -100 476 188 0 0 chr9 361482 361567 -141909877 - MER53 DNA DNA -12 177 93 * 241 271 156 0 chr9 361741 361837 -141909607 + MIR SINE MIR 152 262 0 1515 189 7 28 chr9 362320 362635 -141908809 + AluJo SINE Alu 1 309 0 1065 224 74 82 chr9 362820 363059 -141908385 - L2 LINE L2 -1 3312 3073 1854 178 0 3 chr9 363059 363357 -141908087 - AluJo SINE Alu -11 301 5 1065 224 74 82 chr9 363357 363371 -141908073 - L2 LINE L2 -240 3073 3060 2306 95 0 3 chr9 363371 363667 -141907777 - AluSc SINE Alu -14 295 1 1065 224 74 82 chr9 363667 363805 -141907639 - L2 LINE L2 -253 3060 2922 2440 130 5 19 chr9 363805 364174 -141907270 + THE1B LTR MaLR 1 364 0 1065 224 74 82 chr9 364174 364267 -141907177 - L2 LINE L2 -391 2922 2830 482 215 30 122 chr9 364487 364724 -141906720 + MIR SINE MIR 48 262 0 2448 83 3 13 chr9 364843 365156 -141906288 + AluSp SINE Alu 1 310 -3 1701 210 81 79 chr9 365180 365655 -141905789 + MLT1F LTR MaLR 35 513 -29 2248 92 31 0 chr9 365655 365947 -141905497 - AluSx SINE Alu -11 301 1 1701 210 81 79 chr9 365947 365976 -141905468 + MLT1F LTR MaLR 513 540 -2 2337 102 0 0 chr9 365987 366280 -141905164 - AluSg SINE Alu -16 294 2 835 218 107 55 chr9 366559 366825 -141904619 + MLT1F1 LTR MaLR 73 363 -204 198 0 0 0 chr9 368069 368091 -141903353 + (CA)n Simple_repeat Simple_repeat 2 23 0 513 285 77 27 chr9 368138 368359 -141903085 + MIR SINE MIR 29 260 -2 1945 143 0 11 chr9 368372 368710 -141902734 + AluSx SINE Alu 1 335 0 222 233 33 33 chr9 368858 368918 -141902526 + L2 LINE L2 3213 3272 0 25 65 0 0 chr9 369015 369061 -141902383 + AT_rich Low_complexity Low_complexity 1 46 0 195 69 0 0 chr9 369531 369560 -141901884 + (CA)n Simple_repeat Simple_repeat 1 29 0 1679 134 4 4 chr9 369709 369955 -141901489 + AluJb SINE Alu 39 284 -28 183 42 0 0 chr9 369960 369984 -141901460 + (CA)n Simple_repeat Simple_repeat 1 24 0 254 287 0 46 chr9 370208 370295 -141901149 - MIR SINE MIR -74 188 106 2872 166 23 32 chr9 370592 370996 -141900448 + L1MB7 LINE L1 5202 5600 -578 2420 74 0 3 chr9 370996 371293 -141900151 + AluY SINE Alu 1 296 -15 2872 166 23 32 chr9 371293 371525 -141899919 + L1MB7 LINE L1 5600 5833 -345 2720 157 48 0 chr9 371793 372270 -141899174 - MER34 LTR ERV1 -16 526 27 294 73 0 0 chr9 373701 373742 -141897702 + (CA)n Simple_repeat Simple_repeat 1 41 0 568 190 52 35 chr9 373831 373947 -141897497 - FLAM_C SINE Alu -15 118 1 1662 171 67 3 chr9 374123 374468 -141896976 + L1MB7 LINE L1 5818 6184 0 2075 111 20 10 chr9 374629 374926 -141896518 - AluSx SINE Alu -12 300 1 1604 162 33 46 chr9 374936 375239 -141896205 - AluJb SINE Alu -13 299 1 300 385 7 28 chr9 375358 375501 -141895943 - MIR3 SINE MIR -33 175 36 21 57 0 0 chr9 376863 376898 -141894546 + GC_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr9 377185 377206 -141894238 + GC_rich Low_complexity Low_complexity 1 21 0 661 198 99 28 chr9 378105 378287 -141893157 - L1MB7 LINE L1 -2 6182 5988 237 65 0 0 chr9 378628 378659 -141892785 + (TG)n Simple_repeat Simple_repeat 1 31 0 1355 130 0 10 chr9 379267 379459 -141891985 + AluJo SINE Alu 97 286 -26 923 142 7 13 chr9 379491 379509 -141891935 - AluSx SINE Alu -158 154 137 1977 113 7 18 chr9 379509 379657 -141891787 - AluSq SINE Alu -32 281 136 2380 85 0 3 chr9 379657 379951 -141891493 - AluSc SINE Alu -11 298 6 1977 113 7 18 chr9 379951 380086 -141891358 - AluSq SINE Alu -177 136 1 923 142 7 13 chr9 380086 380222 -141891222 - AluSx SINE Alu -175 137 1 2451 77 6 0 chr9 380226 380537 -141890907 - AluSp SINE Alu 0 313 1 1567 267 68 34 chr9 380544 381135 -141890309 - L1ME3A LINE L1 -44 6126 5516 2194 96 7 0 chr9 381200 381491 -141889953 - AluSc SINE Alu -12 297 5 1740 157 0 51 chr9 381901 382213 -141889231 - AluJo SINE Alu -16 296 1 629 200 45 7 chr9 383498 383653 -141887791 + MIR SINE MIR 39 199 -63 1163 248 74 76 chr9 383912 384289 -141887155 - MLT1H1 LTR MaLR -4 622 207 999 231 54 30 chr9 384293 384331 -141887113 - MLT2D LTR ERVL 0 414 378 195 42 0 0 chr9 384331 384355 -141887089 + (TG)n Simple_repeat Simple_repeat 2 25 0 999 231 54 30 chr9 384355 384649 -141886795 - MLT2D LTR ERVL -36 378 74 557 229 83 13 chr9 384688 384845 -141886599 - MLT1H1 LTR MaLR -400 190 23 331 238 38 23 chr9 384869 385006 -141886438 - HAL1b LINE L1 -199 2308 785 1933 113 0 4 chr9 385869 386125 -141885319 + AluSx SINE Alu 36 290 -22 1188 111 0 0 chr9 386201 386381 -141885063 + (TCCC)n Simple_repeat Simple_repeat 1 180 0 1856 236 158 2 chr9 386563 387102 -141884342 - L1ME3A LINE L1 -159 6011 5389 2499 69 0 7 chr9 387162 387468 -141883976 + AluY SINE Alu 1 304 -7 261 0 0 0 chr9 389099 389128 -141882316 + (CA)n Simple_repeat Simple_repeat 2 30 0 2088 112 20 3 chr9 389208 389503 -141881941 - AluSg SINE Alu -10 300 1 2137 129 3 0 chr9 389836 390138 -141881306 - AluSx SINE Alu -9 303 1 2339 97 3 0 chr9 390990 391288 -141880156 - AluSp SINE Alu -12 301 3 2021 150 0 10 chr9 392156 392463 -141878981 + AluJb SINE Alu 1 304 -8 264 271 85 42 chr9 392483 392601 -141878843 - MLT1I LTR MaLR -232 177 55 2219 112 3 3 chr9 393663 393968 -141877476 - AluSx SINE Alu -7 305 1 23 0 0 0 chr9 394326 394349 -141877095 + AT_rich Low_complexity Low_complexity 1 23 0 1268 276 173 28 chr9 395098 396125 -141875319 + L2 LINE L2 2131 3307 -6 2040 143 3 0 chr9 396616 396917 -141874527 - AluSx SINE Alu -10 302 1 2316 96 0 26 chr9 397083 397395 -141874049 - AluSx SINE Alu -8 304 1 306 0 0 0 chr9 397451 397485 -141873959 + (TG)n Simple_repeat Simple_repeat 2 35 0 1721 115 4 27 chr9 397486 397747 -141873697 - AluSx SINE Alu -23 289 35 916 141 7 0 chr9 398531 398666 -141872778 + AluJo SINE Alu 1 136 -176 259 241 0 0 chr9 398832 398886 -141872558 + MER116 DNA Mariner 5 58 -22 708 251 137 38 chr9 398888 399310 -141872134 - HAL1 LINE L1 -167 2340 1877 1083 233 149 73 chr9 399313 399383 -141872061 - HAL1 LINE L1 -719 1788 1725 1874 151 3 0 chr9 399383 399701 -141871743 - AluSq SINE Alu 0 319 1 1083 233 149 73 chr9 399701 399967 -141871477 - HAL1 LINE L1 -782 1725 1481 2119 73 59 21 chr9 399967 400256 -141871188 + AluY SINE Alu 1 300 -11 1083 233 149 73 chr9 400256 400560 -141870884 - HAL1 LINE L1 -1026 1481 1097 2307 89 3 22 chr9 400570 400883 -141870561 - AluSx SINE Alu 0 312 6 1929 157 7 0 chr9 400906 401199 -141870245 - AluJb SINE Alu -17 295 1 402 100 0 0 chr9 401335 401395 -141870049 + (CA)n Simple_repeat Simple_repeat 2 61 0 434 83 0 4 chr9 401395 401599 -141869845 - AluSc SINE Alu -17 292 1 1152 309 100 17 chr9 401614 402203 -141869241 - L1MC4a LINE L1 -1847 5961 5324 21 0 0 0 chr9 402400 402421 -141869023 + AT_rich Low_complexity Low_complexity 1 21 0 273 241 114 32 chr9 402421 402579 -141868865 - L1P LINE L1 -1090 5056 4886 1450 169 126 0 chr9 402807 403068 -141868376 + AluJb SINE Alu 1 294 -18 1690 182 31 3 chr9 403257 403548 -141867896 + AluJo SINE Alu 1 299 -13 185 0 40 0 chr9 403945 403970 -141867474 + (TG)n Simple_repeat Simple_repeat 1 26 0 962 86 0 0 chr9 404332 404460 -141866984 - AluSp/q SINE Alu -3 310 183 198 0 0 0 chr9 404465 404487 -141866957 + (T)n Simple_repeat Simple_repeat 1 22 0 1096 151 13 23 chr9 404487 404714 -141866730 - L1MB3 LINE L1 -36 6147 5917 300 297 97 0 chr9 405418 405563 -141865881 + MIR SINE MIR 72 230 -32 238 206 389 0 chr9 407524 407655 -141863789 - MIR SINE MIR -3 259 78 1010 235 12 20 chr9 407842 408097 -141863347 - MLT1D-int LTR MaLR -1118 253 1 1970 179 37 103 chr9 408099 408160 -141863284 - MLT1D LTR MaLR -4 501 438 1996 124 7 14 chr9 408160 408450 -141862994 + AluSx SINE Alu 5 292 -20 1970 179 37 103 chr9 408450 408924 -141862520 - MLT1D LTR MaLR -67 438 1 929 126 161 60 chr9 409756 409955 -141861489 + MER20 DNA MER1_type 1 219 0 219 274 36 48 chr9 410239 410323 -141861121 + MIR SINE MIR 96 178 -84 214 274 65 0 chr9 410830 410892 -141860552 + MIR SINE MIR 117 182 -80 2148 131 7 0 chr9 410975 411281 -141860163 - AluSx SINE Alu -4 308 1 7439 171 100 16 chr9 411313 411594 -141859850 - L1 LINE L1 -1446 4700 4444 1883 164 17 3 chr9 411594 411887 -141859557 - AluJo SINE Alu -15 297 1 7439 171 100 16 chr9 411887 413217 -141858227 - L1 LINE L1 -1702 4444 2954 2215 201 21 70 chr9 413236 413540 -141857904 + L1MA9 LINE L1 4695 5012 -1172 240 108 0 0 chr9 413540 413577 -141857867 + tRNA-Cys-TGC tRNA tRNA 1 37 -38 2215 201 21 70 chr9 413577 413908 -141857536 + L1MA9 LINE L1 5012 5322 -862 2719 10 0 0 chr9 413908 414201 -141857243 + AluY SINE Alu 1 293 -18 2215 201 21 70 chr9 414201 414316 -141857128 + L1MA9 LINE L1 5322 5441 -743 922 113 8 15 chr9 414317 414450 -141856994 + AluSq/x SINE Alu 1 132 -180 3962 166 91 17 chr9 414450 415268 -141856176 + L1MA9 LINE L1 5432 6309 -3 2298 108 0 10 chr9 415374 415680 -141855764 + AluSq SINE Alu 1 303 -10 257 27 54 0 chr9 416099 416136 -141855308 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 1809 151 18 7 chr9 416139 416423 -141855021 - AluJo SINE Alu -25 287 1 235 333 86 37 chr9 416922 417084 -141854360 - L2 LINE L2 -491 2823 2654 416 282 189 18 chr9 417330 417663 -141853781 - L2 LINE L2 -881 2433 2044 2281 84 3 34 chr9 417825 418147 -141853297 - AluSx SINE Alu 0 312 1 392 352 101 6 chr9 418149 418308 -141853136 - MER91A DNA MER1_type -19 177 4 1103 203 28 24 chr9 418324 418536 -141852908 + MER20 DNA MER1_type 7 219 0 24 67 0 0 chr9 420816 420861 -141850583 + AT_rich Low_complexity Low_complexity 1 45 0 889 137 0 30 chr9 420897 421028 -141850416 + AluJo SINE Alu 1 127 -185 901 198 19 0 chr9 422564 422721 -141848723 + AluJo SINE Alu 137 296 -6 524 318 71 82 chr9 423711 423866 -141847578 - L2 LINE L2 -35 3237 3082 1932 145 13 26 chr9 423866 424169 -141847275 + AluJo SINE Alu 1 299 -13 524 318 71 82 chr9 424169 424353 -141847091 - L2 LINE L2 -190 3082 2902 250 303 15 0 chr9 424355 424421 -141847023 - L2 LINE L2 -626 2688 2622 2038 116 3 14 chr9 424963 425256 -141846188 + AluJo SINE Alu 1 290 -22 310 288 169 6 chr9 425425 425585 -141845859 - MIR SINE MIR -17 245 60 22 0 0 0 chr9 425981 426003 -141845441 + AT_rich Low_complexity Low_complexity 1 22 0 717 193 14 14 chr9 426004 426149 -141845295 - MER5A DNA MER1_type 0 189 45 2169 155 63 86 chr9 426153 426549 -141844895 - MLT2B2 LTR ERVL -10 505 122 3501 109 40 0 chr9 426549 427043 -141844401 - MER75 DNA T2_type 0 514 1 2169 155 63 86 chr9 427043 427157 -141844287 - MLT2B2 LTR ERVL -393 122 7 298 180 0 0 chr9 427163 427213 -141844231 - MER5A DNA MER1_type -138 51 2 919 188 6 6 chr9 429139 429309 -141842135 + AluJb SINE Alu 139 308 -4 384 234 53 66 chr9 429321 429547 -141841897 + L1MC5 LINE L1 7713 7935 -26 1523 169 99 0 chr9 429848 430121 -141841323 + AluJb SINE Alu 1 300 -12 2396 208 25 30 chr9 430401 430925 -141840519 + MER82 DNA MER2_type 11 531 -122 750 100 20 0 chr9 430926 431026 -141840418 + U6 snRNA snRNA 1 102 -5 519 217 130 0 chr9 431045 431160 -141840284 + MER82 DNA MER2_type 524 653 0 363 346 65 34 chr9 432197 432460 -141838984 + L3 LINE CR1 278 548 -1029 522 310 207 32 chr9 432813 433252 -141838192 + L3 LINE CR1 687 1202 -375 651 247 82 58 chr9 433388 433716 -141837728 - L1ME4a LINE L1 -216 5905 5570 221 298 60 0 chr9 433746 433830 -141837614 + L3 LINE CR1 1462 1550 -27 2925 10 0 0 chr9 434138 434452 -141836992 - AluYb8 SINE Alu -4 314 1 297 333 94 19 chr9 434664 434823 -141836621 + MIR SINE MIR 90 260 -2 231 289 144 0 chr9 434886 434983 -141836461 + L2 LINE L2 3198 3308 -5 2430 62 0 10 chr9 436155 436462 -141834982 - AluY SINE Alu -7 304 1 235 280 21 32 chr9 436496 436589 -141834855 - Charlie7 DNA MER1_type -11 2601 2510 3161 162 84 71 chr9 437498 437968 -141833476 - LTR8A LTR ERV1 0 727 243 5988 113 25 1 chr9 437968 439416 -141832028 - L1PA13 LINE L1 -11 6152 4681 3161 162 84 71 chr9 439416 439663 -141831781 - LTR8A LTR ERV1 -484 243 1 249 218 128 0 chr9 440114 440192 -141831252 - MIR SINE MIR -91 171 84 304 194 0 5 chr9 440547 440618 -141830826 - AluS SINE Alu -20 280 232 1508 175 46 15 chr9 440619 440882 -141830562 - AluJo SINE Alu -41 271 1 2756 98 83 2 chr9 441366 441762 -141829682 + MSTC LTR MaLR 1 428 0 392 278 25 102 chr9 442973 443218 -141828226 - L1ME LINE L1 -384 5737 5512 28 0 0 0 chr9 443660 443688 -141827756 + AT_rich Low_complexity Low_complexity 1 28 0 1688 169 13 23 chr9 444251 444425 -141827019 - AluJo SINE Alu -8 304 133 1869 80 0 8 chr9 444425 444664 -141826780 + AluY SINE Alu 57 293 -18 1688 169 13 23 chr9 444664 444796 -141826648 - AluJo SINE Alu -179 133 1 2413 63 0 3 chr9 445363 445670 -141825774 - AluY SINE Alu 0 306 1 2228 108 10 3 chr9 446675 446980 -141824464 + AluSx SINE Alu 1 307 -5 183 237 26 92 chr9 447367 447443 -141824001 - MIR SINE MIR -136 126 56 1891 154 3 14 chr9 447486 447779 -141823665 + AluJb SINE Alu 1 290 -22 2026 150 0 3 chr9 447840 448134 -141823310 + AluSx SINE Alu 1 293 -19 866 213 38 16 chr9 448148 448331 -141823113 + MER5A DNA MER1_type 2 188 -1 5007 65 194 27 chr9 448964 449672 -141821772 - LTR12 LTR ERV1 0 826 1 1055 208 33 0 chr9 449724 449907 -141821537 + MER5A DNA MER1_type 1 189 0 207 0 0 0 chr9 450430 450453 -141820991 + (TG)n Simple_repeat Simple_repeat 2 24 0 4538 119 134 31 chr9 452066 453430 -141818014 - pTR5 LTR ERV1 0 2606 1524 31 58 0 0 chr9 455772 455824 -141815620 + AT_rich Low_complexity Low_complexity 1 52 0 22 70 0 0 chr9 455986 456029 -141815415 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr9 456543 456564 -141814880 + AT_rich Low_complexity Low_complexity 1 21 0 284 312 178 36 chr9 456977 457253 -141814191 + L2 LINE L2 1771 2085 -1229 250 288 182 25 chr9 458140 458338 -141813106 - MIR SINE MIR -3 259 31 530 295 106 10 chr9 459753 459884 -141811560 - MIR SINE MIR -10 252 92 2271 125 0 0 chr9 459884 460196 -141811248 + AluSx SINE Alu 1 312 0 530 295 106 10 chr9 460196 460271 -141811173 - MIR SINE MIR -170 92 26 894 241 63 69 chr9 460322 460670 -141810774 - L1ME4a LINE L1 -286 5835 5490 300 213 516 7 chr9 460831 460986 -141810458 + MIR SINE MIR 21 254 -8 485 257 75 70 chr9 461211 461452 -141809992 - MIR SINE MIR -3 259 18 280 138 92 62 chr9 462407 462472 -141808972 + MIR3 SINE MIR 125 191 -17 349 222 178 10 chr9 462995 463251 -141808193 - L1ME LINE L1 -527 5594 5281 21 71 0 0 chr9 463258 463300 -141808144 + AT_rich Low_complexity Low_complexity 1 42 0 22 35 0 0 chr9 463343 463372 -141808072 + AT_rich Low_complexity Low_complexity 1 29 0 370 327 96 6 chr9 463441 463712 -141807732 + L2 LINE L2 2653 2963 -309 319 310 14 41 chr9 463741 463770 -141807674 + L2 LINE L2 3121 3149 -164 1964 125 31 7 chr9 463770 464059 -141807385 - AluSq SINE Alu -17 296 1 319 310 14 41 chr9 464059 464174 -141807270 + L2 LINE L2 3149 3261 -52 2618 145 88 47 chr9 464183 464672 -141806772 + LTR22 LTR ERVK 1 509 0 310 294 34 62 chr9 464730 464907 -141806537 - L1ME4a LINE L1 -1088 5058 4887 30 0 0 0 chr9 466842 466872 -141804572 + AT_rich Low_complexity Low_complexity 1 30 0 761 188 0 0 chr9 467233 467350 -141804094 + FLAM_A SINE Alu 1 117 -16 2003 159 13 0 chr9 467614 467922 -141803522 - AluJo SINE Alu 0 312 1 2496 131 6 0 chr9 467999 468358 -141803086 - MER46B DNA MER2_type 0 236 1 4107 177 70 11 chr9 468831 469739 -141801705 - L1MB5 LINE L1 -1 6173 5215 2267 108 3 13 chr9 469750 470065 -141801379 - AluSx SINE Alu 0 312 1 2777 212 30 14 chr9 470067 470721 -141800723 - L1MB5 LINE L1 -1092 5054 4412 2251 116 6 3 chr9 470721 471032 -141800412 - AluSx SINE Alu 0 312 1 2777 212 30 14 chr9 471032 471121 -141800323 - L1MB5 LINE L1 -1734 4412 4336 2266 112 3 0 chr9 471121 471417 -141800027 - AluSp SINE Alu -15 298 2 2777 212 30 14 chr9 471417 471439 -141800005 - L1MB5 LINE L1 -1810 4336 4316 257 315 100 30 chr9 471665 471719 -141799725 - L1MC/D LINE L1 -1981 5827 5778 1098 219 8 60 chr9 471719 471970 -141799474 - MER8 DNA MER2_type -1 238 1 257 315 100 30 chr9 471970 472115 -141799329 - L1MC/D LINE L1 -2030 5778 5614 1991 157 57 21 chr9 472130 472513 -141798931 - L1MB2 LINE L1 0 6171 5775 1574 213 74 51 chr9 473203 473714 -141797730 - L1MD3 LINE L1 0 7995 7473 * 1668 202 18 9 chr9 473710 474037 -141797407 - L1MD3 LINE L1 -958 7037 6708 2187 103 0 0 chr9 474349 474658 -141796786 - AluSc SINE Alu 0 309 1 2237 107 3 16 chr9 475773 476083 -141795361 + AluSx SINE Alu 1 306 -6 217 250 0 0 chr9 476325 476373 -141795071 - MIR SINE MIR -2 260 213 1875 146 32 106 chr9 476375 476650 -141794794 + THE1C LTR MaLR 1 238 -137 2009 127 14 0 chr9 476650 476934 -141794510 + AluSx SINE Alu 1 288 -24 1875 146 32 106 chr9 476934 477063 -141794381 + THE1C LTR MaLR 238 375 0 2263 107 3 0 chr9 477123 477421 -141794023 + AluSg SINE Alu 2 300 -10 242 349 64 41 chr9 477494 477666 -141793778 - L2 LINE L2 -183 3089 2914 395 106 15 0 chr9 478243 478309 -141793135 + (CA)n Simple_repeat Simple_repeat 2 68 0 39 38 0 0 chr9 478309 478362 -141793082 + AT_rich Low_complexity Low_complexity 1 53 0 2214 108 3 0 chr9 478379 478667 -141792777 + AluSq SINE Alu 5 293 -20 236 186 17 0 chr9 478696 478755 -141792689 + (TA)n Simple_repeat Simple_repeat 2 61 0 405 269 56 0 chr9 478893 479001 -141792443 - L2 LINE L2 -1 3312 3199 2184 124 3 0 chr9 479309 479608 -141791836 + AluSx SINE Alu 6 305 -7 2691 3 0 0 chr9 480113 480421 -141791023 - AluYb8 SINE Alu 0 324 17 2129 123 0 10 chr9 481446 481755 -141789689 + AluSx SINE Alu 1 306 -6 2211 97 0 0 chr9 483828 484118 -141787326 - AluY SINE Alu -21 290 1 1443 89 139 0 chr9 485467 485669 -141785775 - MER30 DNA MER1_type 0 230 1 473 279 34 34 chr9 486649 486828 -141784616 - MER20B DNA MER1_type -604 179 1 1621 144 66 4 chr9 487064 487335 -141784109 - AluJo SINE Alu -23 289 2 1181 262 92 26 chr9 488729 489111 -141782333 - MLT1I LTR MaLR -2 407 1 2063 138 3 0 chr9 490310 490608 -141780836 - AluSx SINE Alu -13 299 1 2093 117 17 3 chr9 491955 492246 -141779198 + AluSx SINE Alu 1 295 -17 1941 112 0 28 chr9 492506 492793 -141778651 - AluSg SINE Alu -19 291 13 28 0 0 0 chr9 492795 492823 -141778621 + AT_rich Low_complexity Low_complexity 1 28 0 232 281 89 34 chr9 494383 494529 -141776915 - L2 LINE L2 -21 3292 3139 4666 177 73 24 chr9 494567 494722 -141776722 + L1MA9 LINE L1 4861 5007 -1305 2319 87 3 3 chr9 494722 495020 -141776424 + AluSg SINE Alu 1 298 -12 4666 177 73 24 chr9 495020 495409 -141776035 + L1MA9 LINE L1 5007 5375 -937 1979 145 0 46 chr9 495409 495734 -141775710 + AluJb SINE Alu 2 311 -1 4666 177 73 24 chr9 495734 496578 -141774866 + L1MA9 LINE L1 5375 6312 0 2221 106 17 0 chr9 496622 496915 -141774529 + AluSx SINE Alu 1 298 -14 236 314 81 5 chr9 497026 497131 -141774313 + MIR SINE MIR 52 163 -45 1742 121 133 0 chr9 498284 498548 -141772896 + AluSx SINE Alu 3 301 -11 197 293 53 0 chr9 499230 499305 -141772139 - MIR3 SINE MIR -1 207 129 351 380 41 36 chr9 500609 500830 -141770614 - L1MEd LINE L1 -5506 613 392 2123 114 13 3 chr9 500897 501195 -141770249 + AluSq SINE Alu 1 301 -12 263 293 27 0 chr9 501208 501283 -141770161 + HsTC2 DNA Tc2 1822 1898 0 266 200 0 0 chr9 501953 501998 -141769446 - L2 LINE L2 -18 3254 3210 1886 154 3 3 chr9 502066 502365 -141769079 + AluJb SINE Alu 1 299 -13 2087 70 19 4 chr9 502374 502645 -141768799 + AluY SINE Alu 1 275 -36 1728 86 0 5 chr9 502720 502940 -141768504 + AluSq SINE Alu 1 219 -94 871 161 0 0 chr9 502940 503077 -141768367 + AluSg/x SINE Alu 166 302 -8 189 246 53 0 chr9 503450 503507 -141767937 - L3b LINE CR1 -140 1443 1384 202 328 103 83 chr9 503841 504189 -141767255 + L2 LINE L2 2898 3252 -20 189 0 0 0 chr9 504782 504803 -141766641 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1989 114 0 14 chr9 504805 505094 -141766350 - AluSx SINE Alu -27 285 1 2262 57 3 7 chr9 505276 505584 -141765860 + AluY SINE Alu 1 307 0 1724 177 7 0 chr9 505768 506051 -141765393 - AluJo SINE Alu -27 285 1 2166 184 71 113 chr9 506170 506919 -141764525 - LTR8A LTR ERV1 -24 685 1 432 277 44 22 chr9 506920 507057 -141764387 - MLT1L LTR MaLR -128 487 348 340 289 44 0 chr9 507089 507203 -141764241 - MLT1L LTR MaLR -339 276 158 1977 115 83 0 chr9 507787 508075 -141763369 - AluSx SINE Alu 0 312 1 432 275 67 13 chr9 508177 508326 -141763118 - MER5B DNA MER1_type -16 162 6 2186 108 10 3 chr9 508686 508991 -141762453 + AluSg SINE Alu 1 307 -3 879 231 16 11 chr9 509558 509740 -141761704 - MER5A DNA MER1_type -6 183 1 181 125 25 0 chr9 509897 509937 -141761507 + MER5C DNA MER1_type 234 274 -50 480 292 26 13 chr9 509986 510140 -141761304 - MLT1L LTR MaLR -113 502 347 723 194 52 0 chr9 510279 510413 -141761031 - MSTC LTR MaLR -2 426 286 1985 139 30 0 chr9 511416 511717 -141759727 - AluSx SINE Alu -2 310 1 1866 189 36 25 chr9 511793 512153 -141759291 - MLT1A1 LTR MaLR -1 364 1 1070 133 36 0 chr9 512337 512503 -141758941 - AluSg/x SINE Alu -7 305 134 2070 129 3 0 chr9 512503 512797 -141758647 - AluSx SINE Alu -17 295 1 2291 95 0 0 chr9 512800 513096 -141758348 - AluY SINE Alu -15 296 1 1022 157 8 81 chr9 513900 514148 -141757296 - L1MB8 LINE L1 0 6178 5949 752 163 39 16 chr9 515650 515779 -141755665 - FLAM_C SINE Alu 0 133 2 2228 107 0 10 chr9 515794 516103 -141755341 - AluSx SINE Alu -6 306 1 2824 103 56 15 chr9 516455 516863 -141754581 - MSTA LTR MaLR -3 425 1 2077 127 3 13 chr9 516942 517250 -141754194 + AluSx SINE Alu 4 308 -4 1903 168 3 0 chr9 517265 517562 -141753882 + AluSx SINE Alu 7 304 -8 26 50 0 0 chr9 517626 517666 -141753778 + AT_rich Low_complexity Low_complexity 1 40 0 1284 95 0 18 chr9 517700 517869 -141753575 + AluSq SINE Alu 1 166 -147 504 121 0 0 chr9 517873 517939 -141753505 + AluS SINE Alu 221 286 -24 25 53 0 18 chr9 518287 518312 -141753132 + AT_rich Low_complexity Low_complexity 1 25 -31 821 143 0 53 chr9 518312 518445 -141752999 + FLAM_C SINE Alu 2 127 -6 25 53 0 18 chr9 518445 518476 -141752968 + AT_rich Low_complexity Low_complexity 25 56 0 2018 114 9 44 chr9 518775 519092 -141752352 - AluSx SINE Alu 0 312 7 201 154 0 0 chr9 519317 519356 -141752088 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2340 93 0 10 chr9 520100 520402 -141751042 - AluSc SINE Alu -10 299 1 189 359 0 0 chr9 520675 520728 -141750716 - L2 LINE L2 -87 3185 3133 235 287 109 20 chr9 520788 520889 -141750555 + MIR SINE MIR 107 216 -46 405 206 103 48 chr9 521357 521483 -141749961 - MER94 DNA DNA 0 134 2 339 270 20 10 chr9 522553 522653 -141748791 - MER5A DNA MER1_type -80 109 9 233 298 0 48 chr9 523109 523231 -141748213 + MIR SINE MIR 63 178 -30 271 284 56 128 chr9 524125 524339 -141747105 + L1ME4a LINE L1 5529 5714 -2094 2167 120 0 7 chr9 524339 524638 -141746806 + AluSq SINE Alu 1 297 -16 271 284 56 128 chr9 524638 524743 -141746701 + L1ME4a LINE L1 5714 5825 -1983 256 181 133 133 chr9 524805 524910 -141746534 + L1ME4a LINE L1 5945 6049 -72 355 274 128 34 chr9 525252 525431 -141746013 - MIR3 SINE MIR -9 199 4 587 218 68 0 chr9 526248 526381 -141745063 - MER5A DNA MER1_type -47 142 1 317 273 24 24 chr9 526411 526514 -141744930 + MER5A DNA MER1_type 3 116 -73 312 70 0 0 chr9 526915 526958 -141744486 + (GA)n Simple_repeat Simple_repeat 1 43 0 342 158 18 0 chr9 526991 527048 -141744396 - MER5A DNA MER1_type -131 58 1 472 250 57 10 chr9 527056 527182 -141744262 - MER5B DNA MER1_type 0 178 56 2257 109 0 3 chr9 527188 527492 -141743952 + AluSq SINE Alu 1 303 -10 477 244 179 19 chr9 527585 527741 -141743703 - MER5A DNA MER1_type 0 189 9 3351 176 48 42 chr9 528981 529726 -141741718 - L1MB2 LINE L1 0 6171 5422 726 161 154 0 chr9 530007 530137 -141741307 - FAM SINE Alu -34 151 2 225 293 67 60 chr9 530360 530510 -141740934 + L2 LINE L2 2717 2867 -447 977 213 65 54 chr9 530563 530934 -141740510 - L1MB2 LINE L1 -967 5179 4805 577 291 56 67 chr9 530936 531293 -141740151 + L2 LINE L2 2961 3313 0 909 178 16 27 chr9 531424 531609 -141739835 - MER5A DNA MER1_type -1 188 6 1448 185 240 9 chr9 531609 531955 -141739489 - MSTB LTR MaLR 0 426 1 7108 66 0 0 chr9 533245 534126 -141737318 - L1PA5 LINE L1 -20 6134 5254 4755 82 16 0 chr9 534134 534766 -141736678 + L1P LINE L1 4347 4988 -1158 2404 84 0 0 chr9 534766 535062 -141736382 - AluSx SINE Alu -16 296 1 1057 113 33 0 chr9 536063 536214 -141735230 + THE1C LTR MaLR 4 159 -216 1996 140 26 0 chr9 536215 536557 -141734887 - L1MA4 LINE L1 -181 6301 5951 657 125 0 21 chr9 536560 536656 -141734788 - AluJo SINE Alu -177 135 42 12963 177 41 21 chr9 536656 537998 -141733446 - L1MA4 LINE L1 -521 5961 4647 1568 164 40 43 chr9 537998 538297 -141733147 + AluJo SINE Alu 1 298 -14 12963 177 41 21 chr9 538297 539835 -141731609 - L1MA4 LINE L1 -1835 4647 3011 2145 122 34 0 chr9 539835 540131 -141731313 - AluSx SINE Alu -6 306 1 12963 177 41 21 chr9 540131 540500 -141730944 - L1MA4 LINE L1 -3471 3011 2651 583 84 122 0 chr9 540491 540598 -141730846 - L1MA4 LINE L1 -4203 1125 1006 * 7096 180 31 33 chr9 540605 540831 -141730613 - L1M1 LINE L1 -4031 2297 2072 1913 164 105 3 chr9 540831 541136 -141730308 - MER1B DNA MER1_type -1 336 1 7096 180 31 33 chr9 541136 543208 -141728236 - L1M1 LINE L1 -4256 2072 27 1938 72 110 0 chr9 543464 543728 -141727716 + AluY SINE Alu 1 293 -18 1763 79 0 0 chr9 543849 544063 -141727381 + AluSg/x SINE Alu 84 297 -15 240 277 88 22 chr9 544094 544231 -141727213 + MARNA DNA Mariner 424 569 -17 590 297 52 9 chr9 544237 544449 -141726995 + MIR SINE MIR 25 245 -17 2161 125 3 6 chr9 545298 545610 -141725834 - AluSx SINE Alu -1 311 1 2122 114 7 3 chr9 546806 547105 -141724339 - AluSx SINE Alu -12 300 1 25 31 0 0 chr9 547105 547137 -141724307 + AT_rich Low_complexity Low_complexity 1 32 0 423 238 157 22 chr9 547139 547362 -141724082 - L1ME4a LINE L1 -65 6056 5804 4152 138 26 10 chr9 547766 548391 -141723053 - MER41B LTR ERV1 0 635 1 279 318 45 11 chr9 549916 550004 -141721440 + MIR SINE MIR 20 110 -98 364 253 80 49 chr9 550361 550523 -141720921 - MIR SINE MIR -1 261 95 1947 136 11 0 chr9 550555 550841 -141720603 + AluSx SINE Alu 9 297 -15 237 200 31 31 chr9 551380 551445 -141719999 + L1MC4 LINE L1 6636 6700 -1342 225 236 0 18 chr9 551448 551503 -141719941 + (TA)n Simple_repeat Simple_repeat 2 55 0 1978 124 32 3 chr9 551524 551807 -141719637 - AluSx SINE Alu -21 291 1 491 181 86 9 chr9 552662 552767 -141718677 - L2 LINE L2 -14 3299 3187 1828 150 10 26 chr9 553032 553338 -141718106 + AluJo SINE Alu 1 301 -11 219 241 17 121 chr9 553629 553745 -141717699 + MIR SINE MIR 128 231 -31 2263 110 0 0 chr9 554098 554398 -141717046 + AluSx SINE Alu 1 300 -12 508 287 66 26 chr9 554568 554840 -141716604 - L1ME4a LINE L1 -246 5875 5593 186 43 0 0 chr9 559122 559145 -141712299 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 249 263 61 30 chr9 560059 560158 -141711286 - L2 LINE L2 0 3272 3171 2159 111 24 0 chr9 560425 560714 -141710730 + AluSx SINE Alu 2 297 -15 192 77 0 0 chr9 562064 562090 -141709354 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2248 96 0 56 chr9 562106 562429 -141709015 + AluSx SINE Alu 1 305 -7 346 211 21 21 chr9 562543 562638 -141708806 + MIR SINE MIR 127 221 -41 896 155 0 14 chr9 563519 563661 -141707783 - FLAM_C SINE Alu -3 140 1 1818 163 3 17 chr9 563712 564013 -141707431 - AluJb SINE Alu -11 301 5 477 214 57 34 chr9 564616 564763 -141706681 - L1ME1 LINE L1 0 6178 6021 1614 176 54 7 chr9 564833 565111 -141706333 + AluJo SINE Alu 1 291 -21 369 192 0 0 chr9 567908 567981 -141703463 - MIR SINE MIR -178 84 12 2500 38 28 0 chr9 568111 568400 -141703044 + AluY SINE Alu 1 297 -14 241 240 173 58 chr9 569073 569177 -141702267 - L1MC4 LINE L1 -2 8040 7925 300 27 0 0 chr9 569177 569214 -141702230 + (TG)n Simple_repeat Simple_repeat 2 38 0 700 201 178 169 chr9 569222 569895 -141701549 - L1MC4 LINE L1 -403 7639 6961 341 243 0 0 chr9 570950 571024 -141700420 + L2 LINE L2 2684 2757 -557 393 254 133 23 chr9 571298 571471 -141699973 + L2 LINE L2 3122 3313 0 1408 149 0 5 chr9 571882 572090 -141699354 + AluJo SINE Alu 84 290 -22 1958 109 47 0 chr9 573225 573500 -141697944 - AluSp SINE Alu -21 292 5 974 167 39 39 chr9 573577 573781 -141697663 - MER20 DNA MER1_type 0 219 16 426 234 53 0 chr9 574485 574579 -141696865 + L2 LINE L2 3186 3284 -29 203 147 0 0 chr9 574596 574630 -141696814 + (GA)n Simple_repeat Simple_repeat 2 35 0 2169 114 0 13 chr9 575094 575392 -141696052 - AluSx SINE Alu -18 294 1 2275 102 0 29 chr9 575800 576114 -141695330 - AluSx SINE Alu -7 305 1 899 285 32 21 chr9 576258 576542 -141694902 - MLT1J LTR MaLR -1 510 224 1870 157 0 38 chr9 576799 577118 -141694326 + AluJo SINE Alu 1 307 -5 23 33 0 0 chr9 577137 577167 -141694277 + AT_rich Low_complexity Low_complexity 1 30 0 2006 94 0 0 chr9 577304 577559 -141693885 + AluSx SINE Alu 1 255 -57 2104 106 0 11 chr9 577715 577997 -141693447 - AluSq SINE Alu -30 283 5 22 0 0 0 chr9 578000 578022 -141693422 + AT_rich Low_complexity Low_complexity 1 22 0 280 221 91 65 chr9 578569 578723 -141692721 + L1ME4a LINE L1 5962 6119 -2 2225 92 10 16 chr9 581711 582016 -141689428 - AluSq SINE Alu -10 303 1 960 211 18 44 chr9 582095 582323 -141689121 + L1PA16 LINE L1 5942 6163 -3 214 275 38 12 chr9 582352 582432 -141689012 - MIR SINE MIR -89 173 92 2281 110 10 3 chr9 582436 582746 -141688698 + AluSx SINE Alu 1 312 0 791 169 0 8 chr9 586058 586182 -141685262 + FLAM_A SINE Alu 1 123 -10 411 312 69 13 chr9 586199 586430 -141685014 - L2 LINE L2 -18 3295 3052 2062 135 14 0 chr9 586462 586758 -141684686 - AluSx SINE Alu -12 300 1 217 256 136 5 chr9 588285 588430 -141683014 + MIR SINE MIR 28 256 -6 1059 163 25 64 chr9 588879 589082 -141682362 + AluJo SINE Alu 87 281 -31 1836 163 17 3 chr9 589110 589411 -141682033 + AluJb SINE Alu 7 311 -1 23 33 0 0 chr9 589711 589741 -141681703 + AT_rich Low_complexity Low_complexity 1 30 0 180 327 39 65 chr9 590340 590399 -141681045 + MIR3 SINE MIR 30 89 -119 1977 161 10 6 chr9 590399 590710 -141680734 - AluJb SINE Alu 0 312 1 180 327 39 65 chr9 590710 590803 -141680641 + MIR3 SINE MIR 89 178 -30 2250 99 0 29 chr9 591054 591367 -141680077 - AluSg SINE Alu -6 304 1 23 0 0 0 chr9 591691 591714 -141679730 + AT_rich Low_complexity Low_complexity 1 23 0 620 125 0 118 chr9 591844 591980 -141679464 - FRAM SINE Alu -12 164 45 1446 193 7 43 chr9 592451 592756 -141678688 - AluJo SINE Alu -18 294 1 628 190 22 51 chr9 592758 592895 -141678549 - AluJo/FLAM SINE Alu -169 133 1 335 134 15 30 chr9 593102 593169 -141678275 - MER5B DNA MER1_type 0 178 113 3045 166 75 46 chr9 593169 594102 -141677342 + LTR8-int LTR ERV1 5043 6257 -6 1033 186 142 9 chr9 594112 594338 -141677106 + LTR8 LTR ERV1 1 256 -435 23 0 0 0 chr9 594353 594376 -141677068 + AT_rich Low_complexity Low_complexity 1 23 0 297 125 0 0 chr9 594414 594470 -141676974 + (TC)n Simple_repeat Simple_repeat 1 56 0 206 155 14 127 chr9 594494 594565 -141676879 + MER5B DNA MER1_type 116 178 0 602 232 49 32 chr9 595386 595571 -141675873 + L1ME2 LINE L1 5943 6130 -34 804 151 8 16 chr9 595600 595726 -141675718 + FRAM SINE Alu 21 145 -31 682 223 82 62 chr9 595800 595915 -141675529 + L1MC5 LINE L1 7489 7600 -361 1558 180 10 37 chr9 595915 596210 -141675234 + AluJb SINE Alu 5 291 -21 682 223 82 62 chr9 596210 596497 -141674947 + L1MC5 LINE L1 7600 7899 -62 2238 95 0 14 chr9 596616 596910 -141674534 + AluSx SINE Alu 1 290 -22 211 230 148 82 chr9 597261 597370 -141674074 + MIR3 SINE MIR 37 158 -50 1805 106 0 16 chr9 597370 597616 -141673828 + AluSx SINE Alu 60 301 -11 211 230 148 82 chr9 597616 597641 -141673803 + MIR3 SINE MIR 158 180 -28 257 319 35 9 chr9 597737 597850 -141673594 + MER5A DNA MER1_type 50 165 -24 2125 119 3 0 chr9 598457 598750 -141672694 + AluSx SINE Alu 1 294 -18 1977 129 3 23 chr9 598778 599080 -141672364 + AluSq SINE Alu 1 296 -17 2190 100 21 3 chr9 599423 599714 -141671730 - AluSx SINE Alu -14 298 3 429 20 0 0 chr9 599781 599831 -141671613 + (TG)n Simple_repeat Simple_repeat 1 50 0 249 284 0 0 chr9 599848 599922 -141671522 - L1ME4a LINE L1 -205 5916 5843 5245 115 29 62 chr9 599949 600282 -141671162 + MER4D LTR ERV1 1 344 -559 2117 107 9 28 chr9 600282 600599 -141670845 - AluSx SINE Alu -1 311 1 5245 115 29 62 chr9 600599 601199 -141670245 + MER4D LTR ERV1 344 903 0 2180 112 0 3 chr9 602510 602797 -141668647 + AluSx SINE Alu 1 286 -26 1221 183 100 0 chr9 605642 605871 -141665573 + AluJo SINE Alu 40 291 -21 26 0 0 0 chr9 605896 605922 -141665522 + AT_rich Low_complexity Low_complexity 1 26 0 2000 135 26 13 chr9 605931 606234 -141665210 + AluJb SINE Alu 1 307 -5 22 0 0 0 chr9 606459 606481 -141664963 + AT_rich Low_complexity Low_complexity 1 22 0 2227 101 0 0 chr9 606490 606776 -141664668 + AluSx SINE Alu 7 292 -20 1010 163 180 85 chr9 607671 607812 -141663632 + MER2 DNA MER2_type 36 162 -183 1943 145 0 3 chr9 607812 608102 -141663342 + AluSx SINE Alu 1 289 -23 1976 74 0 8 chr9 608102 608359 -141663085 - AluY SINE Alu -55 256 1 1010 163 180 85 chr9 608359 608499 -141662945 + MER2 DNA MER2_type 161 345 0 1734 142 42 21 chr9 608524 608812 -141662632 + AluJb SINE Alu 3 296 -16 500 266 97 7 chr9 609998 610152 -141661292 - MIR SINE MIR -75 187 20 194 133 67 22 chr9 611685 611730 -141659714 + L2 LINE L2 2677 2723 -591 1498 143 23 37 chr9 613426 613588 -141657856 - AluSx SINE Alu -16 296 138 2235 92 0 0 chr9 613588 613882 -141657562 - AluY SINE Alu -12 299 6 1498 143 23 37 chr9 613882 614019 -141657425 - AluSx SINE Alu -174 138 1 234 196 78 0 chr9 615455 615506 -141655938 - L1PA15-16 LINE L1 -6208 641 587 1628 151 36 4 chr9 615683 615962 -141655482 + AluJo SINE Alu 1 288 -24 2307 92 0 3 chr9 618560 618863 -141652581 - AluY SINE Alu -9 302 1 221 115 0 19 chr9 619414 619466 -141651978 + (GA)n Simple_repeat Simple_repeat 1 51 0 1635 186 20 0 chr9 619962 620258 -141651186 + AluJo SINE Alu 5 306 -6 713 180 0 43 chr9 620407 620546 -141650898 + FLAM_A SINE Alu 1 133 0 1419 129 126 16 chr9 620980 621258 -141650186 + AluSg SINE Alu 1 306 0 203 222 0 22 chr9 621268 621313 -141650131 - MER5A DNA MER1_type -108 81 38 646 226 97 0 chr9 622918 623113 -141648331 + L1ME3A LINE L1 5944 6157 -13 652 307 68 43 chr9 623307 623704 -141647740 + MLT1I LTR MaLR 3 409 0 664 181 22 14 chr9 623789 623927 -141647517 - MER105 DNA DNA -28 176 38 1065 190 16 0 chr9 623996 624180 -141647264 - MER5A DNA MER1_type -2 187 1 2273 100 0 0 chr9 624583 624884 -141646560 + AluSq SINE Alu 1 301 -12 2050 129 0 0 chr9 625473 625767 -141645677 - AluSx SINE Alu -17 295 2 1982 97 0 33 chr9 625988 626288 -141645156 + AluSx SINE Alu 1 290 -22 595 350 45 8 chr9 626843 627089 -141644355 - MLT1H LTR MaLR -273 276 22 1986 125 7 0 chr9 627490 627779 -141643665 - AluSx SINE Alu -21 291 1 2182 97 0 25 chr9 628586 628906 -141642538 - AluSx SINE Alu 0 312 1 2114 99 3 3 chr9 629180 629472 -141641972 - AluSg SINE Alu -15 295 4 197 273 13 39 chr9 629490 629567 -141641877 + L3 LINE CR1 1245 1319 -258 1977 122 7 7 chr9 629888 630191 -141641253 - AluSx SINE Alu -9 303 1 246 32 0 0 chr9 630321 630352 -141641092 + (TG)n Simple_repeat Simple_repeat 2 32 0 1013 177 74 5 chr9 630386 630589 -141640855 - AluJb SINE Alu -13 299 83 2061 189 16 2 chr9 630698 631122 -141640322 - L1MB4 LINE L1 0 6180 5751 1583 141 82 4 chr9 631137 631406 -141640038 - AluJb SINE Alu -22 290 1 665 254 78 20 chr9 631591 631835 -141639609 - MIR SINE MIR -3 259 2 1370 230 60 7 chr9 632954 633398 -141638046 - MLT2B1 LTR ERVL 0 520 1 323 305 29 0 chr9 634261 634366 -141637078 + L2 LINE L2 2560 2667 -647 2298 81 0 0 chr9 635255 635563 -141635881 + AluY SINE Alu 1 308 -3 1665 140 0 11 chr9 635605 635876 -141635568 + AluSx SINE Alu 1 268 -44 26 98 0 0 chr9 635907 635989 -141635455 + AT_rich Low_complexity Low_complexity 1 82 0 511 303 26 7 chr9 636453 636605 -141634839 + MIR SINE MIR 21 175 -87 767 136 0 0 chr9 636696 636806 -141634638 + AluSq/x SINE Alu 2 111 -202 4147 125 86 26 chr9 636808 637542 -141633902 + MER4E LTR ERV1 2 779 0 697 123 38 0 chr9 637542 637648 -141633796 + MER50 LTR ERV1 595 704 -30 187 368 123 0 chr9 637659 637765 -141633679 - MIR SINE MIR -60 148 30 192 280 140 10 chr9 638126 638226 -141633218 + MIR SINE MIR 76 188 -74 30263 115 20 55 chr9 638572 644976 -141626468 + L1PA8 LINE L1 12 6172 0 2082 118 26 3 chr9 645133 645438 -141626006 + AluSx SINE Alu 1 312 0 261 0 0 0 chr9 645441 645470 -141625974 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 1710 109 13 63 chr9 645627 645929 -141625515 - AluSx SINE Alu 0 312 26 1663 135 60 0 chr9 645989 646256 -141625188 + AluSq SINE Alu 21 303 -10 1056 146 0 0 chr9 646424 646588 -141624856 - AluSq SINE Alu -15 298 135 2015 131 0 0 chr9 646590 646880 -141624564 - AluSx SINE Alu -22 290 1 1917 132 7 0 chr9 646952 647241 -141624203 + AluSp SINE Alu 9 299 -14 264 30 0 0 chr9 647243 647276 -141624168 + (TA)n Simple_repeat Simple_repeat 1 33 0 657 209 67 53 chr9 647289 647449 -141623995 + MLT1E LTR MaLR 1 166 -427 1611 148 36 43 chr9 647449 647753 -141623691 - AluSx SINE Alu -10 302 1 657 209 67 53 chr9 647753 647817 -141623627 + MLT1E LTR MaLR 166 228 -365 1384 290 52 44 chr9 647840 648382 -141623062 + L1MA6 LINE L1 160 705 -6144 240 35 0 0 chr9 648708 648737 -141622707 + (CA)n Simple_repeat Simple_repeat 1 29 0 3982 219 57 26 chr9 648756 649396 -141622048 + L1MA6 LINE L1 1383 2002 -4847 1603 184 0 0 chr9 649396 649663 -141621781 + AluJb SINE Alu 1 267 -45 3982 219 57 26 chr9 649663 649853 -141621591 + L1MA6 LINE L1 2002 2185 -4664 1340 197 49 21 chr9 649853 650137 -141621307 + AluJo SINE Alu 1 292 -20 3982 219 57 26 chr9 650137 650444 -141621000 + L1MA6 LINE L1 2185 2556 -4293 11903 169 52 27 chr9 650454 651837 -141619607 + L1MA6 LINE L1 3434 4780 -2222 8884 50 8 2 chr9 651837 652900 -141618544 + MER11C LTR ERVK 1 1070 -1 11903 169 52 27 chr9 652900 653538 -141617906 + L1MA6 LINE L1 4780 5400 -1602 2070 124 0 7 chr9 653538 653836 -141617608 - AluSx SINE Alu -12 300 5 11903 169 52 27 chr9 653836 654280 -141617164 + L1MA6 LINE L1 5400 5831 -1171 2031 102 0 11 chr9 654280 654564 -141616880 - AluSx SINE Alu -31 281 1 11903 169 52 27 chr9 654564 655456 -141615988 + L1MA6 LINE L1 5831 7002 0 1322 150 184 83 chr9 655467 655874 -141615570 - LTR47A LTR ERVL 0 452 5 1170 228 64 10 chr9 655977 656288 -141615156 - L1MA6 LINE L1 -6 6294 5967 3393 168 66 138 chr9 656374 656757 -141614687 - MER21A LTR ERV1 -16 915 506 2219 102 0 7 chr9 656757 657062 -141614382 + AluSx SINE Alu 1 303 -9 3393 168 66 138 chr9 657062 657649 -141613795 - MER21A LTR ERV1 -425 506 15 227 326 54 86 chr9 657874 658187 -141613257 + MLT1I-int LTR MaLR 1039 1341 -30 1446 248 18 33 chr9 658232 658559 -141612885 + MLT1I LTR MaLR 9 330 -79 1308 206 44 24 chr9 658559 658855 -141612589 + AluSq SINE Alu 1 302 -1 1446 248 18 33 chr9 658855 658926 -141612518 + MLT1I LTR MaLR 330 401 -8 1598 174 32 76 chr9 659232 659456 -141611988 - MLT1B LTR MaLR 0 390 191 2001 109 24 0 chr9 659456 659749 -141611695 - AluSq SINE Alu -13 300 1 1598 174 32 76 chr9 659749 659932 -141611512 - MLT1B LTR MaLR -199 191 1 414 292 137 0 chr9 660528 660689 -141610755 + MIR SINE MIR 77 259 -3 198 274 55 14 chr9 660678 660751 -141610693 + L2 LINE L2 3238 3313 0 * 1896 136 18 0 chr9 661134 661420 -141610024 + AluSc SINE Alu 1 291 -18 1800 172 13 0 chr9 661428 661736 -141609708 + AluJb SINE Alu 1 312 0 1164 204 0 0 chr9 661736 661758 -141609686 + AluJo SINE Alu 1 330 0 1543 158 71 128 chr9 662021 662385 -141609059 - MLT1C LTR MaLR -2 465 135 1734 147 34 0 chr9 662385 662678 -141608766 - AluJb SINE Alu -9 303 1 1543 158 71 128 chr9 662678 662806 -141608638 - MLT1C LTR MaLR -332 135 1 436 252 72 14 chr9 662919 663058 -141608386 - MIR SINE MIR -18 244 98 2058 98 3 20 chr9 663268 663565 -141607879 - AluSx SINE Alu -20 292 1 2173 84 3 0 chr9 663994 664280 -141607164 - AluSg SINE Alu -23 287 1 277 292 68 114 chr9 664410 664718 -141606726 - L2 LINE L2 0 3272 2979 1423 147 9 0 chr9 665433 665651 -141605793 - AluJb SINE Alu -19 293 74 257 222 19 0 chr9 665652 665706 -141605738 + LTR67 LTR ERVL 495 549 -8 378 232 11 17 chr9 665811 665904 -141605540 - AluS SINE Alu -228 75 1 1143 166 5 0 chr9 666171 666358 -141605086 - MER5A DNA MER1_type 0 189 2 519 219 80 22 chr9 666403 666540 -141604904 + LTR67 LTR ERVL 405 549 -8 2187 104 0 16 chr9 667019 667335 -141604109 - AluSq SINE Alu -2 311 1 1755 100 108 0 chr9 667731 667990 -141603454 - AluSg SINE Alu -17 293 7 381 202 326 8 chr9 668159 668288 -141603156 + MER5B DNA MER1_type 5 174 -4 323 207 49 0 chr9 668296 668388 -141603056 - MIR SINE MIR -73 135 32 1080 186 0 69 chr9 668708 668892 -141602552 - AluJo SINE Alu -23 289 94 2263 88 0 0 chr9 668892 669187 -141602257 - AluSg SINE Alu -15 295 1 297 0 0 0 chr9 669187 669220 -141602224 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 1080 186 0 69 chr9 669220 669281 -141602163 - AluJo SINE Alu -216 96 60 1781 136 11 7 chr9 669410 669697 -141601747 + AluSg SINE Alu 1 288 -22 2466 51 0 10 chr9 669732 670046 -141601398 - AluY SINE Alu 0 311 1 418 247 155 12 chr9 670090 670284 -141601160 - L1MC4a LINE L1 -202 5919 5708 2138 112 3 0 chr9 670287 670591 -141600853 + AluSx SINE Alu 1 305 -7 2428 48 0 0 chr9 671031 671326 -141600118 - AluY SINE Alu -16 295 1 334 266 70 8 chr9 671377 671505 -141599939 + L1ME LINE L1 5548 5683 -438 637 309 85 0 chr9 671505 671728 -141599716 + MIR SINE MIR 20 261 -1 303 242 162 20 chr9 671815 671914 -141599530 + L1ME4a LINE L1 6004 6116 -5 1848 159 29 35 chr9 671952 672254 -141599190 - MER2 DNA MER2_type 0 344 43 2134 98 0 16 chr9 672254 672559 -141598885 + AluSx SINE Alu 1 300 -12 1848 159 29 35 chr9 672559 672602 -141598842 - MER2 DNA MER2_type -301 43 1 1648 144 4 4 chr9 673073 673337 -141598107 + AluSx SINE Alu 39 302 -10 1569 156 64 14 chr9 675428 675711 -141595733 - MLT1C LTR MaLR 0 467 171 2100 115 0 10 chr9 675723 676037 -141595407 - AluSx SINE Alu -1 311 1 276 254 56 16 chr9 676086 676212 -141595232 + L1ME LINE L1 5758 5888 -233 712 322 135 24 chr9 676287 676746 -141594698 + L2 LINE L2 2804 3313 0 2194 87 10 3 chr9 676756 677067 -141594377 + AluSq SINE Alu 1 313 0 946 156 12 0 chr9 677827 677987 -141593457 - AluSg/x SINE Alu -8 304 143 431 154 121 0 chr9 678096 678173 -141593271 + MLT1A1 LTR MaLR 1 92 -273 2129 109 0 7 chr9 678173 678475 -141592969 + AluSq SINE Alu 1 300 -13 431 154 121 0 chr9 678475 678488 -141592956 + MLT1A1 LTR MaLR 92 102 -263 366 127 18 0 chr9 678521 678576 -141592868 + MSTD LTR MaLR 341 396 0 217 173 19 0 chr9 678765 678817 -141592627 + A-rich Low_complexity Low_complexity 6 58 0 709 221 128 0 chr9 679256 679451 -141591993 - MIR SINE MIR -35 227 8 1402 278 57 15 chr9 679554 680026 -141591418 + LTR33 LTR ERVL 24 515 -6 514 260 117 0 chr9 680369 680523 -141590921 + MIR SINE MIR 49 220 -42 1376 102 13 35 chr9 680523 680749 -141590695 + AluSc SINE Alu 81 301 -8 991 10 59 22 chr9 680825 681250 -141590194 + (TG)n Simple_repeat Simple_repeat 1 440 0 607 198 27 0 chr9 681290 681401 -141590043 + MER106B DNA MER1_type 42 155 -904 21 36 0 0 chr9 681404 681432 -141590012 + AT_rich Low_complexity Low_complexity 1 28 0 358 179 0 0 chr9 681511 681567 -141589877 + MLT1A2 LTR MaLR 1 56 -318 2447 59 0 0 chr9 681568 681871 -141589573 + AluSg SINE Alu 1 303 -7 805 213 63 19 chr9 681871 682078 -141589366 + MLT1A2 LTR MaLR 159 374 0 1520 170 21 24 chr9 682171 682459 -141588985 + AluJo SINE Alu 11 297 -15 1866 143 3 19 chr9 683006 683313 -141588131 - AluSx SINE Alu -10 302 1 379 309 104 53 chr9 683532 683869 -141587575 + L2 LINE L2 2945 3298 -15 198 103 0 0 chr9 683985 684014 -141587430 + (A)n Simple_repeat Simple_repeat 1 29 0 1843 284 59 38 chr9 684516 685224 -141586220 + L1MEd LINE L1 1 723 -5396 2062 127 0 19 chr9 685316 685632 -141585812 + AluSx SINE Alu 1 310 -2 2064 119 3 3 chr9 685764 686074 -141585370 + AluSx SINE Alu 1 310 -2 478 291 179 14 chr9 686232 686455 -141584989 + MIR SINE MIR 3 262 0 1517 185 35 3 chr9 686587 686874 -141584570 + AluJo SINE Alu 2 297 -15 2296 183 71 54 chr9 686934 687080 -141584364 + L1MD1 LINE L1 5061 5203 -1039 1693 163 0 26 chr9 687080 687386 -141584058 + AluJo SINE Alu 1 298 -14 2296 183 71 54 chr9 687386 687465 -141583979 + L1MD1 LINE L1 5203 5279 -963 2082 121 0 16 chr9 687465 687778 -141583666 - AluSx SINE Alu -4 308 1 1876 132 10 3 chr9 687780 688069 -141583375 - AluJb SINE Alu -9 303 13 2296 183 71 54 chr9 688069 688375 -141583069 + L1MD1 LINE L1 5279 5578 -664 2236 109 0 0 chr9 688375 688688 -141582756 - AluSq SINE Alu 0 313 1 2296 183 71 54 chr9 688688 689119 -141582325 + L1MD1 LINE L1 5578 6070 -172 1158 243 28 12 chr9 688909 689234 -141582210 + L1MB8 LINE L1 5843 6172 -6 * 1505 178 7 17 chr9 689250 689537 -141581907 + AluJo SINE Alu 11 294 -18 2185 98 0 0 chr9 689537 689823 -141581621 + AluSg SINE Alu 1 286 -24 2187 76 26 7 chr9 689837 690128 -141581316 + AluSg1 SINE Alu 1 300 -9 270 115 0 0 chr9 690128 690180 -141581264 + (TA)n Simple_repeat Simple_repeat 2 53 0 2187 76 26 7 chr9 690180 690191 -141581253 + AluSg1 SINE Alu 300 309 0 263 286 118 17 chr9 690526 690645 -141580799 - L2 LINE L2 -21 3251 3121 482 250 24 18 chr9 691443 691588 -141579856 + L1ME3 LINE L1 5998 6146 -16 1848 116 61 0 chr9 691588 691865 -141579579 - AluSx SINE Alu -18 294 1 482 250 24 18 chr9 691865 691883 -141579561 + L1ME3 LINE L1 6146 6162 0 644 130 43 9 chr9 691894 692009 -141579435 + L1MB3 LINE L1 6063 6181 -2 910 174 6 6 chr9 692067 692228 -141579216 + AluJb SINE Alu 1 161 -151 207 0 0 0 chr9 692253 692276 -141579168 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 503 300 62 12 chr9 692665 692825 -141578619 - MIR3 SINE MIR -9 199 32 1915 148 7 0 chr9 692922 693232 -141578212 - AluJo SINE Alu 0 312 1 2252 69 0 0 chr9 693267 693580 -141577864 - AluY SINE Alu 0 313 1 1492 191 68 3 chr9 693585 693894 -141577550 - L1MB8 LINE L1 -11 6167 5839 273 228 0 0 chr9 693947 694026 -141577418 + GA-rich Low_complexity Low_complexity 3 81 0 335 307 114 55 chr9 694082 694284 -141577160 - MIR SINE MIR -29 233 20 628 243 80 57 chr9 694446 694747 -141576697 + L1MC4a LINE L1 5697 6004 -1804 1996 136 3 0 chr9 694757 695065 -141576379 + AluSx SINE Alu 1 309 -3 194 264 28 42 chr9 695065 695137 -141576307 - L2 LINE L2 -20 3252 3182 1040 146 6 0 chr9 695174 695339 -141576105 - FRAM SINE Alu -15 161 1 252 161 0 61 chr9 695714 695908 -141575536 + AluJo SINE Alu 38 300 -2 436 280 84 0 chr9 695913 696056 -141575388 + MIR SINE MIR 47 201 -61 1778 174 7 0 chr9 696086 696390 -141575054 + AluJb SINE Alu 1 306 -6 953 197 55 24 chr9 696938 697192 -141574252 - MER58B DNA MER1_type 0 341 80 1334 126 37 5 chr9 697193 697408 -141574036 + AluJb SINE Alu 79 300 -12 1319 191 20 20 chr9 697411 697715 -141573729 + AluJb SINE Alu 1 304 -8 754 166 45 85 chr9 697827 698050 -141573394 - AluJo SINE Alu -11 301 88 2124 95 10 3 chr9 698050 698356 -141573088 - AluSx SINE Alu -4 308 1 449 140 40 30 chr9 698415 698515 -141572929 + MER53 DNA DNA 1 101 -88 245 363 0 7 chr9 698577 698723 -141572721 + C-rich Low_complexity Low_complexity 2 146 0 1471 132 8 31 chr9 699699 699956 -141571488 + AluSx SINE Alu 32 282 -30 2208 97 0 0 chr9 700598 700897 -141570547 + AluSc SINE Alu 1 299 -10 2094 117 0 0 chr9 700905 701204 -141570240 + AluSx SINE Alu 1 299 -13 2015 117 0 3 chr9 701239 701544 -141569900 + AluSx SINE Alu 3 306 0 1277 156 5 9 chr9 701561 701785 -141569659 + AluJb SINE Alu 1 223 -89 1795 57 0 4 chr9 701787 702014 -141569430 - AluY SINE Alu -85 226 1 1898 121 47 13 chr9 702071 702236 -141569208 - AluSx SINE Alu 0 312 131 1911 101 21 21 chr9 702236 702548 -141568896 - AluSx SINE Alu 0 312 2 1898 121 47 13 chr9 702548 702680 -141568764 - AluSx SINE Alu -181 131 5 2059 93 4 0 chr9 702842 703158 -141568286 + AluSg SINE Alu 1 317 0 2240 80 7 7 chr9 703162 703463 -141567981 + AluSc SINE Alu 1 301 -8 2417 37 0 7 chr9 703651 703946 -141567498 + AluY SINE Alu 6 298 -13 2162 96 6 10 chr9 704414 704727 -141566717 + AluSp SINE Alu 1 312 -1 794 313 64 0 chr9 704750 704983 -141566461 - MIR SINE MIR 0 262 15 331 262 121 56 chr9 705382 705628 -141565816 + L2 LINE L2 2735 2998 -274 763 214 26 0 chr9 706130 706284 -141565160 - MIR SINE MIR -26 236 79 1693 97 0 4 chr9 706398 706636 -141564808 + AluSq SINE Alu 1 237 -76 834 141 0 15 chr9 706636 706765 -141564679 + AluSg/x SINE Alu 168 294 -18 3210 176 71 69 chr9 706937 707078 -141564366 - L1MB7 LINE L1 -5 6179 6040 309 26 0 0 chr9 707078 707116 -141564328 + (TTTA)n Simple_repeat Simple_repeat 1 38 0 2054 110 7 3 chr9 707119 707410 -141564034 - AluSc SINE Alu -17 292 1 1052 156 0 0 chr9 707413 707573 -141563871 - FRAM SINE Alu -6 160 1 3210 176 71 69 chr9 707573 707897 -141563547 - L1MB7 LINE L1 -146 6038 5716 2025 92 14 17 chr9 707897 708033 -141563411 + AluSq SINE Alu 1 136 -177 2244 94 3 0 chr9 708033 708332 -141563112 + AluSp SINE Alu 1 300 -13 2025 92 14 17 chr9 708332 708489 -141562955 + AluSq SINE Alu 136 293 -20 3210 176 71 69 chr9 708489 708810 -141562634 - L1MB7 LINE L1 -468 5716 5397 1712 159 28 0 chr9 708810 709099 -141562345 - AluJo SINE Alu -15 297 1 3210 176 71 69 chr9 709099 709260 -141562184 - L1MB7 LINE L1 -787 5397 5238 2090 125 3 0 chr9 709260 709572 -141561872 - AluSq SINE Alu 0 313 1 3210 176 71 69 chr9 709572 709663 -141561781 - L1MB7 LINE L1 -946 5238 5117 1918 136 3 3 chr9 709663 709965 -141561479 - AluSx SINE Alu -10 302 1 3210 176 71 69 chr9 709965 710010 -141561434 - L1MB7 LINE L1 -1067 5117 5074 2094 113 3 0 chr9 710210 710502 -141560942 - AluSx SINE Alu -17 295 3 2090 112 0 3 chr9 710504 710799 -141560645 - AluSg SINE Alu -16 294 1 2076 103 3 7 chr9 710801 711101 -141560343 - AluSq SINE Alu -14 299 1 1523 207 0 7 chr9 711412 711550 -141559894 + AluJo SINE Alu 1 138 -174 2300 74 0 0 chr9 711550 711846 -141559598 + AluY SINE Alu 1 296 -15 1523 207 0 7 chr9 711846 712011 -141559433 + AluJo SINE Alu 138 302 -10 396 0 0 0 chr9 712825 712869 -141558575 + (TG)n Simple_repeat Simple_repeat 2 45 0 405 139 93 0 chr9 712870 712956 -141558488 - L1ME2 LINE L1 -12 6152 6059 2365 69 0 3 chr9 714331 714635 -141556809 - AluSx SINE Alu -8 304 2 27 29 0 0 chr9 716651 716685 -141554759 + AT_rich Low_complexity Low_complexity 1 34 0 2355 80 0 6 chr9 716808 717122 -141554322 - AluSx SINE Alu 0 312 1 2006 124 7 0 chr9 717309 717608 -141553836 - AluSx SINE Alu -11 301 1 2041 113 7 10 chr9 718124 718433 -141553011 - AluSx SINE Alu -4 308 1 885 194 0 0 chr9 718680 718845 -141552599 - FRAM SINE Alu -11 165 1 332 224 116 68 chr9 718876 719023 -141552421 + MER5A DNA MER1_type 9 162 -27 183 237 17 51 chr9 719490 719549 -141551895 - MIR3 SINE MIR -18 190 134 795 234 66 5 chr9 719890 720087 -141551357 - MER3 DNA MER1_type 0 209 1 357 264 28 38 chr9 720318 720424 -141551020 + MIR3 SINE MIR 69 173 -35 2210 119 0 3 chr9 720644 720955 -141550489 - AluSx SINE Alu -2 310 1 493 289 76 25 chr9 721147 721344 -141550100 - MIR SINE MIR -54 208 2 2063 93 21 3 chr9 721930 722219 -141549225 - AluSp SINE Alu -19 294 1 2315 104 0 0 chr9 722847 723156 -141548288 + AluSx SINE Alu 1 309 -3 2082 128 3 0 chr9 723334 723638 -141547806 - AluSx SINE Alu -7 305 1 2051 100 17 0 chr9 724038 724337 -141547107 - AluSx SINE Alu -8 304 1 1681 153 23 17 chr9 725187 725487 -141545957 - L1MC1 LINE L1 -16 6317 6016 33 25 0 0 chr9 725536 725576 -141545868 + AT_rich Low_complexity Low_complexity 1 40 0 1454 140 21 103 chr9 725576 725905 -141545539 - AluYb8 SINE Alu -16 302 1 1484 154 3 55 chr9 725906 726198 -141545246 - AluJo SINE Alu -22 290 14 964 144 0 20 chr9 726213 726366 -141545078 - FRAM SINE Alu -11 165 16 1357 141 14 0 chr9 726390 726603 -141544841 - AluSg/x SINE Alu -15 295 80 2354 58 0 7 chr9 726873 727167 -141544277 - AluY SINE Alu -19 292 1 295 297 123 22 chr9 727454 727592 -141543852 + L2 LINE L2 3162 3313 0 1633 159 10 7 chr9 727724 728019 -141543425 - AluJo SINE Alu -16 296 1 2352 72 0 0 chr9 728025 728315 -141543129 - AluSx SINE Alu -20 292 3 2608 196 77 15 chr9 728365 728972 -141542472 - L1MB7 LINE L1 -20 6164 5520 1995 110 28 0 chr9 729133 729415 -141542029 + AluSx SINE Alu 1 290 -22 190 116 47 0 chr9 729415 729458 -141541986 + (TA)n Simple_repeat Simple_repeat 1 45 0 4109 31 0 0 chr9 729726 730205 -141541239 - L1PA4 LINE L1 0 6155 5677 23 33 0 0 chr9 730613 730643 -141540801 + AT_rich Low_complexity Low_complexity 1 30 0 963 147 47 47 chr9 730646 730692 -141540752 - L1MB4 LINE L1 0 6180 6135 2029 90 75 0 chr9 730692 730971 -141540473 + AluSq SINE Alu 1 300 -13 219 36 0 0 chr9 730971 730999 -141540445 + (TA)n Simple_repeat Simple_repeat 2 29 0 963 147 47 47 chr9 730999 731142 -141540302 - L1MB4 LINE L1 -43 6137 5990 2305 77 0 13 chr9 732119 732431 -141539013 + AluSx SINE Alu 5 312 0 1031 248 74 60 chr9 732588 733020 -141538424 - L2 LINE L2 -1 3312 2875 9401 57 12 81 chr9 733156 734603 -141536841 - SVA Other Other 0 1386 40 240 35 0 0 chr9 734612 734641 -141536803 + (AGGGGG)n Simple_repeat Simple_repeat 3 31 0 1900 221 72 70 chr9 734941 735135 -141536309 + MLT1E2 LTR MaLR 2 194 -432 1573 181 7 16 chr9 735135 735438 -141536006 + AluJo SINE Alu 3 302 -10 1900 221 72 70 chr9 735438 735867 -141535577 + MLT1E2 LTR MaLR 194 626 0 508 190 60 9 chr9 735871 735987 -141535457 - L1MB7 LINE L1 -2374 5434 5313 286 313 55 16 chr9 736072 736200 -141535244 - L2 LINE L2 -1099 2215 2083 1891 119 51 0 chr9 736298 736593 -141534851 - AluSx SINE Alu -2 310 1 2314 67 0 7 chr9 736600 736897 -141534547 - AluY SINE Alu -13 298 4 318 285 97 24 chr9 737352 737501 -141533943 + MIR SINE MIR 18 185 -64 2267 98 0 0 chr9 737982 738287 -141533157 + AluSx SINE Alu 1 305 -7 181 241 13 152 chr9 739094 739252 -141532192 + L3b LINE CR1 1103 1238 -345 549 286 92 54 chr9 739575 739816 -141531628 - MIR SINE MIR -12 250 2 1886 129 17 3 chr9 740083 740378 -141531066 - AluJb SINE Alu -13 299 1 196 316 158 11 chr9 740597 740692 -141530752 + MIR SINE MIR 29 137 -71 1776 175 0 3 chr9 740828 741137 -141530307 + AluJb SINE Alu 1 308 -4 2173 91 0 3 chr9 742217 742529 -141528915 + AluSq SINE Alu 2 312 0 1563 163 31 17 chr9 742810 743104 -141528340 - AluJb SINE Alu -10 302 5 1438 148 47 12 chr9 743158 743414 -141528030 - AluJb SINE Alu -34 278 14 2205 57 0 30 chr9 743439 743736 -141527708 - AluY SINE Alu -18 293 6 760 160 15 0 chr9 743743 743874 -141527570 - FLAM_C SINE Alu 0 133 1 2285 199 127 16 chr9 744119 744171 -141527273 - L1MB7 LINE L1 0 6184 6139 2182 79 0 3 chr9 744171 744461 -141526983 - AluSg SINE Alu -21 289 1 2285 199 127 16 chr9 744461 744990 -141526454 - L1MB7 LINE L1 -45 6139 5538 1054 157 47 5 chr9 745013 745204 -141526240 - MLT2B3 LTR ERVL -355 199 1 776 178 16 26 chr9 745204 745395 -141526049 - L1MB7 LINE L1 -717 5467 5279 2154 81 0 42 chr9 745411 745719 -141525725 - AluSq SINE Alu -18 295 1 245 299 123 13 chr9 746016 746170 -141525274 + L3b LINE CR1 1176 1346 -237 2308 81 0 10 chr9 746902 747210 -141524234 - AluY SINE Alu -6 305 1 250 140 53 0 chr9 747863 747920 -141523524 + (TATG)n Simple_repeat Simple_repeat 3 62 0 1592 184 7 3 chr9 748629 748928 -141522516 - AluJo SINE Alu -10 302 3 381 318 175 5 chr9 750850 751061 -141520383 - MIR SINE MIR 0 262 16 5047 201 61 77 chr9 751275 752545 -141518899 - Charlie1a DNA MER1_type -1311 1450 206 2211 110 7 0 chr9 752545 752854 -141518590 + AluSx SINE Alu 1 311 -1 5047 201 61 77 chr9 752854 753057 -141518387 - Charlie1a DNA MER1_type -2555 206 1 333 289 0 25 chr9 753135 753256 -141518188 - MER5B DNA MER1_type -60 118 1 2146 100 6 10 chr9 754861 755172 -141516272 - AluSq SINE Alu -3 310 1 1731 136 17 10 chr9 755612 755907 -141515537 + AluJo SINE Alu 3 299 -13 2152 93 3 13 chr9 756789 757089 -141514355 + AluSx SINE Alu 1 297 -15 4030 163 35 49 chr9 757130 757926 -141513518 - LTR1 LTR ERV1 0 785 1 1989 110 13 10 chr9 758347 758656 -141512788 - AluSx SINE Alu -2 310 1 24 32 0 0 chr9 758770 758801 -141512643 + AT_rich Low_complexity Low_complexity 1 31 0 1004 111 6 47 chr9 759141 759313 -141512131 + AluSq SINE Alu 133 297 -16 263 180 0 20 chr9 760181 760231 -141511213 + L2 LINE L2 3263 3311 -2 1728 143 27 7 chr9 760400 760700 -141510744 - AluJb SINE Alu -6 306 1 869 194 15 61 chr9 760908 760945 -141510499 - MER5A DNA MER1_type -2 187 150 892 133 0 15 chr9 760945 761080 -141510364 + FLAM_C SINE Alu 1 133 0 869 194 15 61 chr9 761080 761238 -141510206 - MER5A DNA MER1_type -39 150 1 829 138 57 13 chr9 762187 762346 -141509098 - FRAM SINE Alu 0 166 1 2117 107 0 49 chr9 762804 763131 -141508313 - AluSx SINE Alu -1 311 1 895 147 0 14 chr9 763158 763301 -141508143 + FLAM_C SINE Alu 1 141 -2 1660 134 0 16 chr9 763323 763576 -141507868 + AluJb SINE Alu 59 307 -5 2143 111 0 32 chr9 763609 763924 -141507520 - AluY SINE Alu -6 305 1 218 200 150 0 chr9 763994 764054 -141507390 - L2 LINE L2 -9 3263 3195 427 257 46 4 chr9 765360 765510 -141505934 + MER58A DNA MER1_type 1 216 -8 315 303 0 10 chr9 766340 766439 -141505005 + (CA)n Simple_repeat Simple_repeat 1 98 0 222 62 0 0 chr9 766887 766919 -141504525 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 2205 104 0 3 chr9 766927 767215 -141504229 - AluSx SINE Alu -25 287 1 216 268 94 71 chr9 767371 767498 -141503946 + L3 LINE CR1 1445 1574 -3 1649 137 13 48 chr9 767622 767902 -141503542 - L1MA9 LINE L1 -1 6311 6042 2395 83 0 0 chr9 767902 768203 -141503241 - AluSc SINE Alu -8 301 1 1649 137 13 48 chr9 768203 768237 -141503207 - L1MA9 LINE L1 -270 6042 6008 1189 102 60 0 chr9 768381 768547 -141502897 - AluSg/x SINE Alu -4 306 131 350 195 78 0 chr9 768547 768624 -141502820 - L1MA9 LINE L1 -296 6016 5934 2344 98 0 0 chr9 768633 768928 -141502516 + AluSg SINE Alu 1 295 -15 2020 88 0 22 chr9 769191 769501 -141501943 - AluSc SINE Alu 0 319 16 660 131 0 0 chr9 769611 769710 -141501734 + FRAM SINE Alu 66 164 -12 2211 118 3 13 chr9 770204 770519 -141500925 - AluSx SINE Alu 0 312 1 1372 133 90 8 chr9 770959 771215 -141500229 - L1 LINE L1 -1577 4569 4293 1648 161 20 43 chr9 772787 773092 -141498352 - AluJo SINE Alu -14 298 1 1860 165 3 19 chr9 773101 773417 -141498027 - AluJb SINE Alu -1 311 1 2440 84 0 0 chr9 773419 773727 -141497717 - AluSx SINE Alu -4 308 1 2391 75 10 0 chr9 774012 774305 -141497139 - AluSx SINE Alu -11 301 6 2175 121 0 7 chr9 774592 774889 -141496555 - AluSx SINE Alu -17 295 1 194 158 0 0 chr9 776664 776702 -141494742 - L2 LINE L2 -20 3252 3215 2321 84 10 0 chr9 776763 777059 -141494385 + AluSp SINE Alu 1 299 -14 543 247 102 24 chr9 777163 777329 -141494115 - MER97b DNA MER1_type? -874 179 1 327 25 0 0 chr9 777575 777615 -141493829 + (TG)n Simple_repeat Simple_repeat 1 40 0 256 283 34 0 chr9 777887 777995 -141493449 - MIR SINE MIR -62 146 31 294 50 0 0 chr9 778121 778161 -141493283 + (CA)n Simple_repeat Simple_repeat 2 41 0 388 256 62 74 chr9 779712 779888 -141491556 + MER112 DNA MER1_type 3 176 -84 261 0 0 0 chr9 779930 779959 -141491485 + (TG)n Simple_repeat Simple_repeat 2 30 0 1804 155 7 17 chr9 780271 780562 -141490882 + AluJo SINE Alu 1 288 -24 1734 180 7 7 chr9 781809 782114 -141489330 - AluJb SINE Alu -7 305 1 702 260 18 27 chr9 783195 783414 -141488030 - MER20 DNA MER1_type -2 217 1 2355 98 7 3 chr9 783581 783888 -141487556 - AluSx SINE Alu 0 312 5 1673 154 44 65 chr9 784054 784437 -141487007 - THE1C LTR MaLR 0 375 1 549 220 54 30 chr9 784863 785031 -141486413 + MER5B DNA MER1_type 1 172 -6 348 137 61 34 chr9 785047 785173 -141486271 + MER58 DNA MER1_type 169 2420 0 1894 135 11 0 chr9 785714 785996 -141485448 + AluSx SINE Alu 1 285 -27 2572 66 0 0 chr9 786393 786697 -141484747 + AluY SINE Alu 1 304 -7 27 29 0 0 chr9 787812 787846 -141483598 + AT_rich Low_complexity Low_complexity 1 34 0 2313 87 0 3 chr9 787846 788133 -141483311 - AluY SINE Alu -25 286 1 1762 178 0 17 chr9 788474 788772 -141482672 - AluJo SINE Alu -19 293 1 3233 245 52 51 chr9 791626 792918 -141478526 - L2 LINE L2 -457 2857 1565 354 220 220 0 chr9 792930 793103 -141478341 + MER5C DNA MER1_type 11 221 -103 3470 145 73 16 chr9 793108 793755 -141477689 - L1MB5 LINE L1 0 6174 5491 1147 130 52 42 chr9 793776 793968 -141477476 + AluJo SINE Alu 85 278 -34 1661 176 8 0 chr9 794012 794279 -141477165 - AluJb SINE Alu -43 269 1 421 195 0 76 chr9 794299 794417 -141477027 + MER5C DNA MER1_type 215 323 -1 220 190 103 0 chr9 794419 794477 -141476967 - L2 LINE L2 -1750 1564 1501 208 253 67 67 chr9 795252 795327 -141476117 - MIR3 SINE MIR -18 190 116 2202 120 0 0 chr9 796171 796472 -141474972 - AluSx SINE Alu -11 301 1 207 211 0 0 chr9 797740 797778 -141473666 + T-rich Low_complexity Low_complexity 3 40 0 284 198 233 0 chr9 797819 797905 -141473539 - MIR SINE MIR -47 215 110 279 0 0 0 chr9 798788 798819 -141472625 + (GA)n Simple_repeat Simple_repeat 2 32 0 558 166 103 34 chr9 800803 800929 -141470515 - MER53 DNA DNA -1 188 72 350 0 44 0 chr9 800929 800974 -141470470 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1873 134 0 4 chr9 800977 801239 -141470205 - AluSx SINE Alu -51 261 1 558 166 103 34 chr9 801239 801283 -141470161 - MER53 DNA DNA -118 71 2 602 134 0 10 chr9 801400 801497 -141469947 - FLAM_A SINE Alu -12 130 35 1386 153 27 135 chr9 802316 802517 -141468927 - AluJo SINE Alu -14 298 146 2437 69 10 0 chr9 802517 802808 -141468636 - AluY SINE Alu -17 294 1 1386 153 27 135 chr9 802808 802940 -141468504 - AluJo SINE Alu -166 146 1 2097 163 39 5 chr9 802949 803335 -141468109 - L1MB7 LINE L1 0 6184 5786 1293 166 101 93 chr9 803573 803958 -141467486 - MLT1B LTR MaLR -2 388 1 180 0 0 0 chr9 804267 804287 -141467157 + (CATTT)n Simple_repeat Simple_repeat 2 21 0 1268 217 50 34 chr9 804667 804989 -141466455 - MER21B LTR ERV1 -124 739 413 2304 94 0 13 chr9 805015 805313 -141466131 - AluSx SINE Alu -14 298 5 881 210 24 54 chr9 805316 805521 -141465923 - MER21B LTR ERV1 -664 199 1 711 235 96 0 chr9 805712 805899 -141465545 - MER3 DNA MER1_type 0 209 5 616 204 0 72 chr9 806301 806482 -141464962 - L1MB7 LINE L1 -893 5253 5086 1016 169 0 12 chr9 806484 806644 -141464800 + FRAM SINE Alu 1 157 -19 911 165 20 42 chr9 806663 806877 -141464567 - L1M4 LINE L1 -1055 5091 4867 2359 86 3 7 chr9 808570 808871 -141462573 + AluSq SINE Alu 1 300 -13 5211 189 57 13 chr9 808914 811001 -141460443 - L1MB4 LINE L1 0 6180 3989 2589 176 6 6 chr9 811978 812461 -141458983 + L1M3 LINE L1 5310 5792 -388 * 4276 165 55 37 chr9 812454 813826 -141457618 + L1MB3 LINE L1 4787 6183 0 574 305 43 31 chr9 813846 814282 -141457162 - L1MB4 LINE L1 -2203 3943 3491 1769 169 3 0 chr9 814371 814673 -141456771 - AluJb SINE Alu -9 303 1 518 297 54 54 chr9 816062 816321 -141455123 + MIR SINE MIR 2 260 -2 1966 120 0 14 chr9 817240 817556 -141453888 - AluSx SINE Alu 0 312 1 354 293 166 50 chr9 818022 818487 -141452957 - L1MC4a LINE L1 -1877 5931 5413 1471 122 32 5 chr9 819253 819474 -141451970 - MER30 DNA MER1_type 0 230 4 195 234 78 47 chr9 819655 819719 -141451725 - MIR3 SINE MIR -1 207 142 700 102 0 0 chr9 819720 819818 -141451626 - AluSg/x SINE Alu -8 302 205 320 54 161 18 chr9 819819 819875 -141451569 - MIR SINE MIR -55 153 90 1889 150 17 0 chr9 820879 821004 -141450440 + AluSx SINE Alu 6 127 -185 387 0 0 0 chr9 821004 821047 -141450397 + (TAA)n Simple_repeat Simple_repeat 2 44 0 1889 150 17 0 chr9 821047 821215 -141450229 + AluSx SINE Alu 127 304 -8 1226 155 163 26 chr9 821224 821488 -141449956 + AluJo SINE Alu 2 301 -1 3576 171 28 21 chr9 821493 822212 -141449232 - L1MA10 LINE L1 -7 6327 5604 501 254 191 11 chr9 822512 822701 -141448743 + MIR SINE MIR 40 262 0 33 25 0 0 chr9 823285 823325 -141448119 + AT_rich Low_complexity Low_complexity 1 40 0 530 309 124 5 chr9 824034 824244 -141447200 - MIR SINE MIR -8 254 20 394 272 54 0 chr9 824249 824341 -141447103 + L2 LINE L2 3168 3264 -8 302 339 16 16 chr9 825122 825243 -141446201 - L1MB4 LINE L1 -3380 2766 2646 2091 103 20 0 chr9 826739 827040 -141444404 - AluSg SINE Alu -3 307 1 230 299 31 10 chr9 827046 827143 -141444301 - L2 LINE L2 -1017 2297 2199 1625 166 14 7 chr9 827528 827811 -141443633 + AluJb SINE Alu 6 290 -22 3656 151 44 27 chr9 827839 828516 -141442928 + L1MB3 LINE L1 5450 6138 -45 1112 144 0 0 chr9 828518 828692 -141442752 + FRAM SINE Alu 1 174 -2 22 0 0 0 chr9 828820 828842 -141442602 + AT_rich Low_complexity Low_complexity 1 22 0 1237 127 84 14 chr9 829040 829253 -141442191 - L1PA16 LINE L1 0 6166 5939 1935 143 3 0 chr9 829828 830135 -141441309 + AluSx SINE Alu 1 308 -4 2015 122 0 3 chr9 830473 830768 -141440676 - AluSx SINE Alu -18 294 1 2055 126 3 0 chr9 831618 831928 -141439516 - AluSx SINE Alu -1 311 1 223 333 67 0 chr9 832034 832109 -141439335 - L2 LINE L2 -2 3270 3191 291 227 82 31 chr9 832599 832696 -141438748 - MIR SINE MIR -56 206 105 394 171 13 13 chr9 833147 833223 -141438221 - MIR SINE MIR -114 148 73 296 262 37 0 chr9 833983 834061 -141437383 - MIR SINE MIR -58 150 76 194 0 0 37 chr9 834646 834673 -141436771 + (GGGTG)n Simple_repeat Simple_repeat 5 30 0 465 324 62 6 chr9 836849 837025 -141434419 - L1ME LINE L1 -462 5659 5474 23 0 0 0 chr9 838443 838466 -141432978 + AT_rich Low_complexity Low_complexity 1 23 0 205 161 0 0 chr9 840040 840071 -141431373 + polypyrimidine Low_complexity Low_complexity 1 31 0 23 33 0 0 chr9 840616 840646 -141430798 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr9 842974 842995 -141428449 + GC_rich Low_complexity Low_complexity 1 21 0 1839 101 63 7 chr9 843253 843539 -141427905 + AluSx SINE Alu 3 304 -8 208 53 53 0 chr9 847584 847622 -141423822 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 201 288 18 45 chr9 848616 848727 -141422717 + G-rich Low_complexity Low_complexity 3 110 0 326 222 9 19 chr9 849389 849497 -141421947 + (CCG)n Simple_repeat Simple_repeat 3 109 0 238 152 0 0 chr9 852685 852731 -141418713 - LTR66 LTR ERVL -168 442 397 437 209 9 9 chr9 854134 854239 -141417205 + MER53 DNA DNA 84 188 -1 229 220 17 17 chr9 854908 854967 -141416477 + CT-rich Low_complexity Low_complexity 3 61 0 220 299 46 46 chr9 855638 855725 -141415719 + L2 LINE L2 3186 3272 0 2081 88 10 10 chr9 856560 856857 -141414587 - AluY SINE Alu -14 297 1 2153 105 0 0 chr9 858711 859006 -141412438 + AluSg SINE Alu 1 295 -15 2852 137 46 0 chr9 859134 859513 -141411931 - L1MB3 LINE L1 -1 6182 5775 405 0 0 0 chr9 859513 859558 -141411886 + (TG)n Simple_repeat Simple_repeat 2 46 0 2852 137 46 0 chr9 859558 859654 -141411790 - L1MB3 LINE L1 -408 5775 5685 319 214 0 0 chr9 864032 864088 -141407356 - L2 LINE L2 0 3272 3217 1760 182 34 0 chr9 864901 865192 -141406252 + AluJb SINE Alu 1 301 -11 2393 107 0 0 chr9 865654 865962 -141405482 + AluSx SINE Alu 1 308 -4 185 310 200 0 chr9 866493 866638 -141404806 + MER5A DNA MER1_type 10 183 -6 311 361 67 0 chr9 868309 868489 -141402955 + MER91A DNA MER1_type 4 195 -1 2394 102 0 0 chr9 868929 869233 -141402211 - AluSc SINE Alu -5 304 1 2215 96 7 0 chr9 869566 869901 -141401543 + AluSq SINE Alu 1 313 0 1638 156 23 0 chr9 869987 870243 -141401201 + AluJo SINE Alu 1 262 -50 484 201 195 0 chr9 870253 870412 -141401032 - MIR SINE MIR 0 262 73 201 149 0 64 chr9 872114 872161 -141399283 + (GGAGAA)n Simple_repeat Simple_repeat 4 47 0 376 200 44 0 chr9 872942 873032 -141398412 - MER53 DNA DNA -15 174 81 279 0 0 0 chr9 873040 873071 -141398373 + (TG)n Simple_repeat Simple_repeat 2 32 0 511 163 24 65 chr9 873172 873295 -141398149 - MER53 DNA DNA -71 118 1 506 260 46 35 chr9 873376 873549 -141397895 + Charlie8 DNA MER1_type 2 176 -2241 211 238 32 16 chr9 873805 873868 -141397576 + MIR SINE MIR 85 148 -60 618 158 10 0 chr9 873963 874064 -141397380 - U6 snRNA snRNA -5 102 1 321 174 58 0 chr9 874266 874335 -141397109 - MLT1I LTR MaLR -11 398 326 1882 124 34 4 chr9 874402 874669 -141396775 - AluSx SINE Alu -15 297 23 285 287 53 0 chr9 874766 874860 -141396584 - MLT1J2 LTR MaLR -306 144 46 2296 107 3 0 chr9 875092 875391 -141396053 - AluSq SINE Alu -13 300 1 231 254 0 0 chr9 875412 875471 -141395973 - MIR SINE MIR -58 204 146 1754 161 0 62 chr9 876215 876538 -141394906 - AluJb SINE Alu -9 303 1 811 266 71 77 chr9 876556 877165 -141394279 - L1MC4a LINE L1 -1845 5963 5359 1879 152 0 23 chr9 877600 877909 -141393535 + AluJb SINE Alu 1 302 -10 444 292 127 56 chr9 877910 878468 -141392976 - L1MC5 LINE L1 -38 7923 7326 235 184 28 47 chr9 878674 878717 -141392727 - L1MC4 LINE L1 -835 7207 7165 2313 87 13 10 chr9 878717 879026 -141392418 - AluSx SINE Alu -1 311 2 235 184 28 47 chr9 879026 879089 -141392355 - L1MC4 LINE L1 -877 7165 7082 550 284 153 5 chr9 879964 880179 -141391265 + MIR SINE MIR 3 249 -13 4964 121 16 15 chr9 880404 881199 -141390245 + L1MA4A LINE L1 5507 6302 -1 331 253 40 0 chr9 882034 882133 -141389311 + MER5A DNA MER1_type 13 115 -74 426 257 48 0 chr9 882192 882297 -141389147 + MER5B DNA MER1_type 1 110 -68 1606 187 3 20 chr9 882727 883026 -141388418 - AluJo SINE Alu -18 294 1 284 241 0 0 chr9 883034 883092 -141388352 + MER5A DNA MER1_type 132 189 0 2169 103 0 48 chr9 883493 883804 -141387640 - AluSx SINE Alu -16 296 1 502 237 8 38 chr9 884415 884546 -141386898 - Charlie8 DNA MER1_type -2203 214 88 192 77 0 0 chr9 884556 884582 -141386862 + (A)n Simple_repeat Simple_repeat 1 26 0 2359 85 3 0 chr9 884704 884997 -141386447 + AluSx SINE Alu 1 294 -18 524 251 71 51 chr9 885501 885812 -141385632 + HAL1b LINE L1 658 974 -374 3419 233 40 7 chr9 885935 886823 -141384621 - L1ME3A LINE L1 -18 6152 5237 2126 266 74 17 chr9 886885 887514 -141383930 - L1ME3A LINE L1 -1121 5025 4343 2181 128 0 0 chr9 887514 887812 -141383632 + AluJb SINE Alu 1 298 -14 2126 266 74 17 chr9 887812 887953 -141383491 - L1ME3A LINE L1 -1803 4343 4211 55 0 0 0 chr9 888287 888342 -141383102 + AT_rich Low_complexity Low_complexity 1 55 0 2143 112 3 3 chr9 888342 888636 -141382808 - AluSx SINE Alu -18 294 1 1991 150 0 0 chr9 888645 888932 -141382512 - AluSx SINE Alu -25 287 1 2216 178 22 10 chr9 888942 889504 -141381940 - L1M4 LINE L1 -704 5480 4911 457 303 198 17 chr9 890640 890802 -141380642 - L2 LINE L2 -1 3271 3140 1916 112 11 4 chr9 890802 891070 -141380374 + AluSq SINE Alu 1 270 -43 457 303 198 17 chr9 891070 891371 -141380073 - L2 LINE L2 -132 3140 2709 1809 159 18 0 chr9 892376 892659 -141378785 - AluJb SINE Alu -24 288 1 223 156 67 0 chr9 892831 892876 -141378568 - L2 LINE L2 -93 3220 3173 582 281 95 33 chr9 893738 893980 -141377464 + MIR SINE MIR 6 262 0 3051 201 60 31 chr9 894120 894282 -141377162 - L1ME1 LINE L1 -126 6040 5884 2260 122 0 0 chr9 894282 894577 -141376867 - AluSx SINE Alu -17 295 1 3051 201 60 31 chr9 894577 895229 -141376215 - L1ME1 LINE L1 -282 5884 5200 234 278 204 12 chr9 895905 896067 -141375377 - MIR SINE MIR -58 204 12 2073 140 3 0 chr9 896822 897114 -141374330 + AluSx SINE Alu 1 293 -19 222 80 60 0 chr9 897987 898037 -141373407 + CT-rich Low_complexity Low_complexity 1 53 0 1702 167 14 24 chr9 898037 898325 -141373119 - AluJb SINE Alu -27 285 1 398 279 84 19 chr9 898386 898540 -141372904 - L1ME LINE L1 -345 5776 5613 687 217 24 18 chr9 898545 898711 -141372733 + MIR SINE MIR 75 241 -21 2239 117 0 7 chr9 899333 899631 -141371813 - AluSx SINE Alu -16 296 1 658 291 78 21 chr9 899973 900419 -141371025 - L1MC/D LINE L1 -328 5793 5337 231 197 13 26 chr9 900498 900574 -141370870 + CT-rich Low_complexity Low_complexity 2 76 0 861 191 33 6 chr9 902351 902534 -141368910 + MER5A DNA MER1_type 2 189 0 1564 184 28 31 chr9 902601 902955 -141368489 - L1MA9 LINE L1 -2 6310 5958 186 287 223 0 chr9 902984 903078 -141368366 - MIR SINE MIR -121 141 27 1993 112 64 14 chr9 903101 903396 -141368048 + AluSx SINE Alu 1 310 -2 530 208 69 39 chr9 903485 903615 -141367829 - MER63A DNA MER1_type -1 209 76 292 175 15 153 chr9 904971 905050 -141366394 + L1ME2 LINE L1 6038 6092 -72 1574 194 17 10 chr9 905050 905343 -141366101 + AluJb SINE Alu 1 295 -17 292 175 15 153 chr9 905343 905400 -141366044 + L1ME2 LINE L1 6092 6155 -9 222 185 19 0 chr9 905950 906004 -141365440 + MIR3 SINE MIR 153 207 -1 1932 139 33 3 chr9 906907 907209 -141364235 - AluJb SINE Alu -1 311 1 368 231 108 0 chr9 907299 907429 -141364015 - MER117 DNA MER1_type -50 147 4 295 155 0 34 chr9 907789 907861 -141363583 + Alu SINE Alu 244 302 0 1738 172 37 3 chr9 908034 908330 -141363114 - AluJb SINE Alu -6 306 1 410 310 43 27 chr9 908648 908832 -141362612 + MIR SINE MIR 11 197 -65 256 86 0 0 chr9 908883 908918 -141362526 - U2 snRNA snRNA -153 35 1 521 278 98 8 chr9 909032 909296 -141362148 + L2 LINE L2 2719 3017 -296 37 62 0 0 chr9 909362 909427 -141362017 + AT_rich Low_complexity Low_complexity 1 65 0 1879 164 3 13 chr9 912623 912935 -141358509 - AluJb SINE Alu -3 309 1 291 268 0 0 chr9 913778 913849 -141357595 - MIR SINE MIR -110 152 82 200 216 134 82 chr9 915386 915483 -141355961 - MIR3 SINE MIR -54 154 53 258 290 11 32 chr9 916382 916475 -141354969 - MIR3 SINE MIR -35 173 83 22 0 0 0 chr9 916529 916551 -141354893 + GC_rich Low_complexity Low_complexity 1 22 0 2611 32 3 10 chr9 917257 917568 -141353876 - AluY SINE Alu -2 309 1 24 0 0 0 chr9 918568 918592 -141352852 + AT_rich Low_complexity Low_complexity 1 24 0 1567 130 0 20 chr9 918683 918937 -141352507 - AluJb SINE Alu -34 278 30 210 209 0 90 chr9 919017 919084 -141352360 + G-rich Low_complexity Low_complexity 6 66 0 268 180 107 41 chr9 919463 919585 -141351859 - MIR SINE MIR -98 164 35 211 280 97 21 chr9 920857 920950 -141350494 + MIR SINE MIR 108 207 -55 218 111 0 44 chr9 921386 921431 -141350013 - L2 LINE L2 -9 3304 3262 562 255 78 29 chr9 923594 923837 -141347607 + MER112 DNA MER1_type 1 255 -1 262 235 23 102 chr9 924488 924649 -141346795 + MIR SINE MIR 42 192 -63 188 209 115 135 chr9 927181 927291 -141344153 + MIR SINE MIR 2 110 -152 2121 102 3 24 chr9 927291 927586 -141343858 - AluSg SINE Alu -2 308 20 188 209 115 135 chr9 927586 927623 -141343821 + MIR SINE MIR 110 146 -116 186 269 77 0 chr9 927765 927817 -141343627 + L2 LINE L2 3258 3313 0 2073 132 0 13 chr9 928462 928765 -141342679 - AluJo SINE Alu -13 299 1 373 288 127 23 chr9 930041 930264 -141341180 + L1MC4a LINE L1 5576 5774 -390 1736 157 19 32 chr9 930264 930577 -141340867 + AluJo SINE Alu 1 309 -3 2338 87 3 10 chr9 930579 930889 -141340555 + AluSg SINE Alu 1 308 -2 373 288 127 23 chr9 930889 930962 -141340482 + L1MC4a LINE L1 5698 5762 -402 226 180 98 49 chr9 931376 931437 -141340007 + MLT1J LTR MaLR 111 174 -337 255 278 81 52 chr9 932237 932410 -141339034 + L2 LINE L2 3112 3289 -24 2201 227 39 20 chr9 933476 933965 -141337479 - MLT1D LTR MaLR -7 498 1 2202 76 31 24 chr9 933978 934269 -141337175 - AluSx SINE Alu -19 293 1 239 200 0 0 chr9 934836 934881 -141336563 - LTR33 LTR ERVL 0 521 477 314 318 228 5 chr9 935623 935834 -141335610 - MIR SINE MIR -2 260 3 933 275 152 7 chr9 935980 936395 -141335049 + L2 LINE L2 2190 2664 -650 451 288 29 79 chr9 936411 936727 -141334717 + L2 LINE L2 2563 2862 -452 23474 29 0 0 chr9 937085 940474 -141330970 + L1PA3 LINE L1 2639 6025 -130 568 292 32 55 chr9 941015 941327 -141330117 - L1ME LINE L1 -305 5816 5512 25 51 0 0 chr9 941383 941422 -141330022 + AT_rich Low_complexity Low_complexity 1 39 0 29 47 0 0 chr9 941731 941774 -141329670 + AT_rich Low_complexity Low_complexity 1 43 0 249 219 0 94 chr9 942328 942424 -141329020 + L2 LINE L2 3227 3313 0 26 64 0 0 chr9 944001 944048 -141327396 + GC_rich Low_complexity Low_complexity 1 47 0 233 270 0 0 chr9 944048 944122 -141327322 + (CGA)n Simple_repeat Simple_repeat 2 75 0 1030 133 0 0 chr9 944407 944550 -141326894 - AluSg SINE Alu -165 145 3 335 278 9 26 chr9 944748 944863 -141326581 - L1MC4a LINE L1 -1866 5942 5830 252 308 11 0 chr9 944903 944994 -141326450 - MIR3 SINE MIR -28 180 89 217 204 20 0 chr9 945168 945217 -141326227 - MIR SINE MIR -125 137 88 278 332 58 13 chr9 946470 946751 -141324693 + L3 LINE CR1 1075 1416 -161 193 296 74 25 chr9 946872 946953 -141324491 - MER5B DNA MER1_type -72 106 22 209 196 0 39 chr9 947369 947420 -141324024 - MIR3 SINE MIR -13 195 147 230 339 16 0 chr9 947425 947487 -141323957 - MIR SINE MIR -112 96 34 389 337 17 6 chr9 947972 948144 -141323300 - MER5A DNA MER1_type -9 180 7 6693 227 57 10 chr9 949121 950889 -141320555 + L1M4 LINE L1 3401 5252 -894 6310 88 15 11 chr9 950890 950950 -141320494 + L1PA8 LINE L1 5254 5312 -860 2279 102 7 0 chr9 950950 951253 -141320191 + AluSq SINE Alu 1 305 -8 6310 88 15 11 chr9 951253 952107 -141319337 + L1PA8 LINE L1 5312 6172 0 11056 158 16 19 chr9 952107 952765 -141318679 + L1P LINE L1 2828 3486 -2660 1101 63 0 7 chr9 952765 952907 -141318537 + L1PA5 LINE L1 6007 6147 -7 11056 158 16 19 chr9 952907 953124 -141318320 + L1P LINE L1 3486 3702 -2444 369 0 0 0 chr9 953124 953165 -141318279 + (CA)n Simple_repeat Simple_repeat 1 41 0 11056 158 16 19 chr9 953165 954317 -141317127 + L1P LINE L1 3702 4851 -1295 3111 94 0 5 chr9 954379 954785 -141316659 + MLT2A1 LTR ERVL 1 404 -40 302 253 101 0 chr9 954785 954884 -141316560 - L1MC4 LINE L1 -1351 6691 6583 439 201 22 39 chr9 954885 955064 -141316380 + (TA)n Simple_repeat Simple_repeat 1 176 0 186 43 0 0 chr9 955118 955141 -141316303 + (TA)n Simple_repeat Simple_repeat 2 24 0 183 42 0 0 chr9 955229 955253 -141316191 + (TA)n Simple_repeat Simple_repeat 1 24 0 439 37 0 0 chr9 955261 955315 -141316129 + MLT2A1 LTR ERVL 391 444 0 6590 86 3 3 chr9 955321 956620 -141314824 + L1PA13 LINE L1 4849 6144 -19 231 167 0 0 chr9 956646 956688 -141314756 + (TATG)n Simple_repeat Simple_repeat 2 43 0 180 0 0 0 chr9 957041 957061 -141314383 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 186 321 80 51 chr9 957693 957830 -141313614 + MIR3 SINE MIR 3 143 -65 897 219 11 0 chr9 958547 958730 -141312714 + MER5A DNA MER1_type 4 188 -1 353 270 122 15 chr9 960264 960414 -141311030 + MIR SINE MIR 20 186 -60 21 36 0 0 chr9 960480 960508 -141310936 + AT_rich Low_complexity Low_complexity 1 28 0 834 205 5 60 chr9 961654 961854 -141309590 + MER5A DNA MER1_type 1 189 0 1066 156 22 0 chr9 961864 962043 -141309401 - MER20 DNA MER1_type -4 215 33 253 184 88 79 chr9 962239 962353 -141309091 + L1ME4a LINE L1 6006 6120 -1 384 257 179 14 chr9 962792 962932 -141308512 + MER5A DNA MER1_type 27 189 0 324 143 0 0 chr9 963030 963079 -141308365 - MLT1D LTR MaLR 0 505 457 428 240 72 72 chr9 963080 963205 -141308239 - MLT1D LTR MaLR -380 125 1 241 231 58 133 chr9 964638 964811 -141306633 + MLT1L LTR MaLR 438 597 -18 21 0 0 0 chr9 965085 965106 -141306338 + AT_rich Low_complexity Low_complexity 1 21 0 776 230 75 0 chr9 965134 965308 -141306136 + MER5A DNA MER1_type 3 189 0 3401 145 31 22 chr9 965585 966241 -141305203 + L1MB3 LINE L1 5417 6119 -64 1564 146 4 15 chr9 966243 966504 -141304940 - Tigger2 DNA MER2_type 0 2718 2461 1163 119 0 0 chr9 966559 966727 -141304717 - Tigger2 DNA MER2_type -1974 744 577 1367 235 76 53 chr9 966735 967420 -141304024 + MER49 LTR ERV1 5 881 -41 2446 64 0 6 chr9 967420 967731 -141303713 + AluSg SINE Alu 2 310 0 2584 125 48 2 chr9 967739 968179 -141303265 - Tigger2 DNA MER2_type -2202 516 57 198 0 0 0 chr9 968593 968615 -141302829 + (A)n Simple_repeat Simple_repeat 1 22 0 290 127 0 0 chr9 969729 969784 -141301660 - L1MB8 LINE L1 -16 6162 6108 1257 199 39 51 chr9 969809 970165 -141301279 - L1MA10 LINE L1 -7 6327 5976 570 226 25 25 chr9 970159 970318 -141301126 - L1ME1 LINE L1 -70 6096 5938 * 276 276 142 0 chr9 970591 970816 -141300628 + L1MC4a LINE L1 5705 5961 -1847 2353 36 0 0 chr9 971910 972222 -141299222 + AluY SINE Alu 1 312 0 183 250 0 0 chr9 972603 972647 -141298797 - MER5A DNA MER1_type -145 44 1 2121 105 14 0 chr9 972776 973072 -141298372 - AluSq SINE Alu -13 300 1 1569 120 85 108 chr9 973214 973614 -141297830 - L1MB3 LINE L1 -2 6181 5791 180 179 0 0 chr9 973617 973656 -141297788 + (TG)n Simple_repeat Simple_repeat 2 40 0 276 235 11 49 chr9 973992 974175 -141297269 + (CATATA)n Simple_repeat Simple_repeat 3 178 0 587 238 0 2 chr9 974175 974331 -141297113 - L1MB3 LINE L1 -378 5796 5643 23 0 0 0 chr9 974904 974927 -141296517 + AT_rich Low_complexity Low_complexity 1 23 0 269 385 0 8 chr9 975461 975591 -141295853 + LTR16B LTR ERVL 102 230 -234 1524 330 123 29 chr9 976431 977418 -141294026 + L3 LINE CR1 355 1433 -144 2320 98 3 0 chr9 977737 978032 -141293412 - AluSp SINE Alu -17 296 1 1291 159 89 63 chr9 978039 978177 -141293267 - AluJo SINE Alu -16 296 163 195 0 27 54 chr9 978177 978214 -141293230 + (TTTTA)n Simple_repeat Simple_repeat 2 37 0 15724 91 5 11 chr9 978221 981107 -141290337 - L1PA7 LINE L1 -13 6141 3268 2151 134 0 0 chr9 981107 981414 -141290030 - AluSc SINE Alu -1 308 2 15724 91 5 11 chr9 981414 981582 -141289862 - L1PA7 LINE L1 -2886 3268 3100 1291 159 89 63 chr9 981582 981705 -141289739 - AluJo SINE Alu -154 158 20 2216 123 21 39 chr9 981724 982107 -141289337 - Tigger2a DNA MER2_type -58 376 1 1881 175 46 9 chr9 982152 982477 -141288967 - MER1B DNA MER1_type 0 337 1 191 265 15 44 chr9 983384 983452 -141287992 - L2 LINE L2 0 3313 3248 1249 199 0 5 chr9 983507 983718 -141287726 + AluJo SINE Alu 84 293 -19 729 261 97 39 chr9 983924 984307 -141287137 + MLT1J LTR MaLR 6 410 -101 2338 135 103 97 chr9 984358 985018 -141286426 - MER4A LTR ERV1 0 664 1 657 281 63 28 chr9 985572 985825 -141285619 - MIR SINE MIR 0 262 1 534 132 0 0 chr9 986367 986443 -141285001 - AluS SINE Alu -13 297 222 1030 120 7 0 chr9 986443 986593 -141284851 - AluJb SINE Alu -161 151 1 2330 78 17 0 chr9 986602 986895 -141284549 - AluY SINE Alu -13 298 1 2408 85 13 3 chr9 986910 987216 -141284228 - AluY SINE Alu 0 311 3 30 0 0 78 chr9 987645 987675 -141283769 + AT_rich Low_complexity Low_complexity 1 25 -34 1999 142 0 13 chr9 987675 987977 -141283467 - AluSx SINE Alu -14 298 1 30 0 0 78 chr9 987977 988010 -141283434 + AT_rich Low_complexity Low_complexity 25 59 0 2293 94 3 10 chr9 988081 988378 -141283066 - AluSg SINE Alu -15 295 1 720 217 39 10 chr9 990442 990649 -141280795 - L1MB3 LINE L1 -3 6180 5968 304 271 141 40 chr9 990814 990974 -141280470 - L1ME LINE L1 -545 5579 5397 237 322 22 11 chr9 990977 991157 -141280287 - L1ME LINE L1 -750 5396 5215 1884 149 4 0 chr9 991369 991650 -141279794 - AluJo SINE Alu -30 282 1 751 297 119 33 chr9 991650 992740 -141278704 - L1ME LINE L1 -1089 5057 3874 669 249 94 26 chr9 992996 993229 -141278215 - MIR SINE MIR -13 249 1 1209 211 39 24 chr9 993343 993680 -141277764 + L1MC4 LINE L1 6806 7147 -895 801 234 85 60 chr9 993832 994267 -141277177 + L1MC4 LINE L1 7587 8032 -10 1268 124 119 0 chr9 994328 994529 -141276915 + AluJo SINE Alu 87 311 -1 260 62 42 0 chr9 995113 995161 -141276283 - L1MB3 LINE L1 -7 6176 6127 894 188 42 16 chr9 995170 995362 -141276082 + Tigger2 DNA MER2_type 1 197 -2521 198 217 96 36 chr9 995802 995885 -141275559 - MIR3 SINE MIR -34 174 87 228 207 69 0 chr9 997166 997224 -141274220 + U6 snRNA snRNA 1 62 -45 180 77 0 0 chr9 997458 997484 -141273960 + (CAAAA)n Simple_repeat Simple_repeat 3 28 0 25 0 0 0 chr9 997915 997940 -141273504 + AT_rich Low_complexity Low_complexity 1 25 0 207 69 0 0 chr9 998731 998760 -141272684 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 227 255 0 64 chr9 998828 998922 -141272522 + T-rich Low_complexity Low_complexity 5 92 0 203 77 0 26 chr9 999174 999213 -141272231 + (CAA)n Simple_repeat Simple_repeat 2 39 0 679 167 0 24 chr9 1001544 1001670 -141269774 - AluJb SINE Alu -22 290 168 435 153 28 0 chr9 1051690 1051762 -141219682 - AluJ/FLAM SINE Alu -238 74 1 329 299 84 24 chr9 1051762 1051929 -141219515 + L2 LINE L2 1945 2121 -1193 202 191 44 103 chr9 1051919 1051987 -141219457 + MER5B DNA MER1_type 9 72 -106 * 319 296 87 0 chr9 1051975 1052090 -141219354 + L2 LINE L2 2250 2374 -940 3930 156 21 0 chr9 1052497 1053207 -141218237 - L1MA7 LINE L1 -10 6485 5761 1345 108 36 115 chr9 1053207 1053486 -141217958 - Tigger7 DNA MER2_type -1 2486 2230 11696 166 33 18 chr9 1053520 1053756 -141217688 - L1MA7 LINE L1 -728 5767 5536 212 77 26 0 chr9 1053756 1053795 -141217649 + (TTTTA)n Simple_repeat Simple_repeat 1 40 0 6528 34 12 1 chr9 1053796 1055322 -141216122 - L1PA5 LINE L1 -13 6141 4547 11696 166 33 18 chr9 1055322 1057572 -141213872 - L1MA7 LINE L1 -959 5536 3236 2535 11 0 0 chr9 1057572 1057848 -141213596 - AluYa5 SINE Alu 0 311 36 11696 166 33 18 chr9 1057848 1057955 -141213489 - L1MA7 LINE L1 -3259 3236 3132 3890 262 30 33 chr9 1058292 1059960 -141211484 - L1MA7 LINE L1 -3213 3137 1466 1789 176 7 0 chr9 1059960 1060255 -141211189 - AluSx SINE Alu -15 297 1 3890 262 30 33 chr9 1060255 1060835 -141210609 - L1MA7 LINE L1 -4884 1466 1329 2035 143 0 29 chr9 1060835 1061143 -141210301 - AluSx SINE Alu -11 301 3 3890 262 30 33 chr9 1061143 1061872 -141209572 - L1MA7 LINE L1 -5021 1329 599 3192 244 9 23 chr9 1061849 1061934 -141209510 - L1MA7 LINE L1 -5543 738 653 * 2422 70 0 19 chr9 1061934 1062246 -141209198 + AluY SINE Alu 1 306 -5 3192 244 9 23 chr9 1062246 1062907 -141208537 - L1MA7 LINE L1 -5628 653 2 200 205 0 0 chr9 1062977 1063016 -141208428 + (TG)n Simple_repeat Simple_repeat 2 40 0 241 204 0 20 chr9 1063017 1063066 -141208378 - L1MA7 LINE L1 -6091 190 143 764 309 148 26 chr9 1063095 1063623 -141207821 - L2 LINE L2 -949 2365 1774 314 309 71 52 chr9 1063677 1063887 -141207557 + L1ME LINE L1 51 264 -5855 1217 301 26 25 chr9 1064305 1065086 -141206358 + L1ME LINE L1 742 1564 -4746 3623 163 34 34 chr9 1065110 1065724 -141205720 - L1MB1 LINE L1 -225 5943 5330 2188 108 0 3 chr9 1065724 1066021 -141205423 - AluSg SINE Alu -14 296 1 3623 163 34 34 chr9 1066021 1066880 -141204564 - L1MB1 LINE L1 -838 5330 3734 20141 49 3 7 chr9 1067026 1067672 -141203772 + L1PA5 LINE L1 2562 3209 -2945 2377 81 0 0 chr9 1067672 1067968 -141203476 - AluY SINE Alu -15 296 1 20141 49 3 7 chr9 1067968 1070917 -141200527 + L1PA5 LINE L1 3209 6153 -1 254 274 67 12 chr9 1070972 1071136 -141200308 + L1M4 LINE L1 3284 3456 -2690 * 285 353 55 0 chr9 1071112 1071330 -141200114 + L1M4 LINE L1 3382 3611 -2535 1062 282 78 32 chr9 1073071 1073325 -141198119 + L1M4 LINE L1 3625 3866 -2280 2289 104 0 13 chr9 1073325 1073642 -141197802 + AluSq SINE Alu 1 313 0 1062 282 78 32 chr9 1073642 1074097 -141197347 + L1M4 LINE L1 3866 4366 -1780 428 238 37 18 chr9 1074203 1074367 -141197077 - L1M4 LINE L1 -2107 4039 3873 646 277 140 15 chr9 1074371 1074829 -141196615 + L1M4 LINE L1 4510 5024 -1122 1268 194 4 9 chr9 1075010 1075242 -141196202 + MER8 DNA MER2_type 1 231 -8 274 302 53 36 chr9 1075616 1075841 -141195603 - HAL1 LINE L1 -846 1661 1433 351 113 0 0 chr9 1076611 1076664 -141194780 + (CA)n Simple_repeat Simple_repeat 1 53 0 223 254 14 0 chr9 1077070 1077141 -141194303 + (CA)n Simple_repeat Simple_repeat 1 72 0 986 215 24 0 chr9 1077852 1078061 -141193383 - MER58A DNA MER1_type 0 224 11 354 45 0 0 chr9 1079653 1079697 -141191747 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 901 174 0 0 chr9 1079707 1079845 -141191599 - FRAM SINE Alu -38 138 1 419 292 65 53 chr9 1080946 1081343 -141190101 + MLT1J LTR MaLR 79 480 -31 388 223 10 29 chr9 1081375 1081478 -141189966 + MIR SINE MIR 86 186 -76 411 296 0 9 chr9 1081636 1081751 -141189693 + MER81 DNA DNA 1 114 0 242 310 0 0 chr9 1081759 1081830 -141189614 + MER81 DNA DNA 44 114 0 303 297 83 48 chr9 1083684 1083829 -141187615 + MIR SINE MIR 110 259 -3 234 375 75 25 chr9 1084359 1084519 -141186925 - L2 LINE L2 -222 3050 2883 306 182 0 0 chr9 1084653 1084719 -141186725 + CT-rich Low_complexity Low_complexity 1 66 0 695 162 7 0 chr9 1084884 1085026 -141186418 + CT-rich Low_complexity Low_complexity 2 144 0 300 333 8 33 chr9 1085548 1085668 -141185776 - MIR SINE MIR -134 128 12 1510 224 259 23 chr9 1085886 1086414 -141185030 + MER82 DNA MER2_type 1 653 0 392 246 272 15 chr9 1086417 1086612 -141184832 - MIR SINE MIR -10 252 8 223 332 82 0 chr9 1086617 1086718 -141184726 - MIR SINE MIR -77 131 22 309 200 66 0 chr9 1087246 1087335 -141184109 + L1MC/D LINE L1 5715 5808 -313 430 283 61 20 chr9 1087649 1087847 -141183597 - L1MDa LINE L1 -3949 2591 2386 744 261 106 11 chr9 1088032 1088381 -141183063 - L1MDa LINE L1 -4573 2148 1767 497 345 133 15 chr9 1088587 1088926 -141182518 + L1MEd LINE L1 472 850 -5269 204 202 0 36 chr9 1089628 1089712 -141181732 + GA-rich Low_complexity Low_complexity 1 81 0 270 303 18 36 chr9 1090064 1090229 -141181215 - L2 LINE L2 -224 3048 2887 282 29 0 0 chr9 1091984 1092019 -141179425 + (TG)n Simple_repeat Simple_repeat 1 35 0 272 145 290 0 chr9 1095189 1095251 -141176193 + MADE1 DNA Mariner 1 80 0 890 201 48 0 chr9 1095417 1095606 -141175838 + MER58 DNA MER1_type 4 201 -2219 2007 151 6 10 chr9 1095606 1095917 -141175527 + AluJb SINE Alu 1 310 -2 21 0 0 0 chr9 1096283 1096304 -141175140 + AT_rich Low_complexity Low_complexity 1 21 0 809 259 59 4 chr9 1096368 1096607 -141174837 - L1ME1 LINE L1 -8 6158 5907 21 0 0 0 chr9 1096823 1096844 -141174600 + AT_rich Low_complexity Low_complexity 1 21 0 4179 85 51 22 chr9 1098665 1099290 -141172154 + L1PA11 LINE L1 5529 6171 -3 216 0 0 0 chr9 1099880 1099904 -141171540 + (T)n Simple_repeat Simple_repeat 1 24 0 429 275 129 23 chr9 1100749 1100920 -141170524 - MER5A DNA MER1_type 0 189 1 323 246 32 24 chr9 1101129 1101255 -141170189 - L1ME4a LINE L1 -17 6104 5978 250 260 41 24 chr9 1101687 1101810 -141169634 - LTR67 LTR ERVL 0 557 433 635 243 55 141 chr9 1101946 1101986 -141169458 - L2 LINE L2 0 3313 3271 2477 146 50 2 chr9 1101986 1102405 -141169039 - L1PA16 LINE L1 -11 6155 5717 635 243 55 141 chr9 1102405 1102767 -141168677 - L2 LINE L2 -42 3271 2946 * 1191 223 208 29 chr9 1102754 1102798 -141168646 - L2 LINE L2 -581 2733 2698 2220 84 3 17 chr9 1102798 1103095 -141168349 + AluY SINE Alu 1 293 -18 1191 223 208 29 chr9 1103095 1103576 -141167868 - L2 LINE L2 -616 2698 2061 249 375 77 0 chr9 1103973 1104077 -141167367 + L2 LINE L2 3149 3260 -12 649 184 18 9 chr9 1104096 1104210 -141167234 - FLAM_A SINE Alu -17 116 2 1322 283 109 13 chr9 1104295 1104829 -141166615 - MLT1K LTR MaLR -2 586 2 22 35 0 0 chr9 1106308 1106337 -141165107 + AT_rich Low_complexity Low_complexity 1 29 0 359 155 0 28 chr9 1106337 1106408 -141165036 + Charlie5 DNA MER1_type 2233 2301 -311 672 142 9 9 chr9 1106417 1106530 -141164914 - L1MC1 LINE L1 -5 6328 6216 12333 95 10 10 chr9 1106530 1108375 -141163069 - L1P LINE L1 -4301 1845 1 2450 142 11 47 chr9 1108374 1108847 -141162597 - L1MC1 LINE L1 -104 6229 5774 * 267 322 47 53 chr9 1109099 1109270 -141162174 + MIR SINE MIR 20 189 -73 450 127 0 0 chr9 1109316 1109387 -141162057 + (TTCC)n Simple_repeat Simple_repeat 1 71 0 2009 138 17 0 chr9 1109387 1109678 -141161766 - AluSx SINE Alu -16 296 1 41119 46 3 3 chr9 1110439 1113387 -141158057 - L1PA4 LINE L1 -9 6146 3200 2371 86 3 0 chr9 1113387 1113688 -141157756 + AluY SINE Alu 1 302 -9 41119 46 3 3 chr9 1113688 1116881 -141154563 - L1PA4 LINE L1 -2955 3200 3 207 292 15 0 chr9 1116931 1116996 -141154448 + L2 LINE L2 3184 3249 -64 271 274 0 0 chr9 1117463 1117547 -141153897 + MER103 DNA DNA 80 163 -3 2287 95 0 25 chr9 1117750 1118066 -141153378 + AluSx SINE Alu 1 308 -4 608 278 99 9 chr9 1118585 1118797 -141152647 - MIR SINE MIR -18 244 14 198 103 0 0 chr9 1118817 1118846 -141152598 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 230 118 0 0 chr9 1119025 1119059 -141152385 + Charlie8 DNA MER1_type 2374 2407 -10 323 333 21 0 chr9 1119226 1119322 -141152122 - L3 LINE CR1 -54 1523 1426 300 376 68 14 chr9 1119553 1119774 -141151670 - L3 LINE CR1 -480 1097 865 687 256 23 6 chr9 1120880 1121056 -141150388 + MIR SINE MIR 13 191 -71 356 266 7 65 chr9 1122774 1122928 -141148516 + L1ME4a LINE L1 5571 5715 -406 237 75 25 25 chr9 1122991 1123031 -141148413 + L1ME4a LINE L1 5725 5764 -357 301 312 27 32 chr9 1123057 1123243 -141148201 + L1ME4a LINE L1 5861 6045 -76 368 314 50 0 chr9 1124746 1124867 -141146577 - MIR3 SINE MIR -41 167 41 1917 180 0 0 chr9 1125514 1125819 -141145625 - AluJo SINE Alu -7 305 1 313 234 49 12 chr9 1126213 1126318 -141145126 - MIR SINE MIR -79 129 20 1152 153 0 0 chr9 1126563 1126739 -141144705 + L1PA16 LINE L1 5980 6155 -11 486 259 94 18 chr9 1126764 1126934 -141144510 + MIR SINE MIR 59 241 -21 262 318 116 8 chr9 1127168 1127297 -141144147 - MIR SINE MIR -71 191 49 312 320 17 10 chr9 1128053 1128225 -141143219 + GA-rich Low_complexity Low_complexity 2 293 0 653 281 69 16 chr9 1129775 1130081 -141141363 - LTR33 LTR ERVL -20 501 180 754 22 0 0 chr9 1130081 1130172 -141141272 - L1PA5 LINE L1 -1322 4824 4734 7649 51 0 23 chr9 1130172 1131517 -141139927 + L1PA5 LINE L1 4831 6154 0 580 214 115 50 chr9 1131518 1131700 -141139744 - LTR33 LTR ERVL -327 194 1 882 133 0 8 chr9 1133375 1133503 -141137941 + AluJb SINE Alu 1 127 -185 293 296 125 6 chr9 1134520 1134696 -141136748 - L1ME LINE L1 -531 5590 5394 558 108 26 25 chr9 1134924 1135115 -141136329 - L1MA4A LINE L1 -24 6279 6028 288 277 40 0 chr9 1135348 1135449 -141135995 - LTR67 LTR ERVL -2 555 451 2742 146 5 34 chr9 1135835 1136279 -141135165 - Tigger2a DNA MER2_type -2 432 2 388 297 55 25 chr9 1136358 1136769 -141134675 - L1ME LINE L1 -1445 4701 4274 25 75 0 0 chr9 1138809 1138862 -141132582 + AT_rich Low_complexity Low_complexity 1 53 0 1227 269 63 41 chr9 1140041 1140361 -141131083 - LTR33 LTR ERVL -2 519 184 195 42 0 0 chr9 1140361 1140385 -141131059 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 1227 269 63 41 chr9 1140385 1140525 -141130919 - LTR33 LTR ERVL -337 184 49 1448 175 126 7 chr9 1141068 1141337 -141130107 - AluJo SINE Alu -1 301 1 477 321 134 13 chr9 1141472 1141696 -141129748 - MIR SINE MIR -1 261 11 22 0 0 0 chr9 1141807 1141829 -141129615 + AT_rich Low_complexity Low_complexity 1 22 0 1853 167 49 71 chr9 1142495 1142962 -141128482 - LTR16A1 LTR ERVL 0 457 1 1834 213 3 42 chr9 1142985 1143365 -141128079 + MLT1A1 LTR MaLR 1 365 0 227 269 30 15 chr9 1143465 1143532 -141127912 - MER112 DNA MER1_type -189 71 4 2024 123 0 7 chr9 1144228 1144544 -141126900 - AluSx SINE Alu 0 314 1 43715 34 23 1 chr9 1144594 1150615 -141120829 + L1PA2 LINE L1 1 6155 0 189 74 0 0 chr9 1150643 1150670 -141120774 + (A)n Simple_repeat Simple_repeat 1 27 0 734 279 169 24 chr9 1150673 1150804 -141120640 + L1ME3A LINE L1 4015 4126 -2020 210 91 0 0 chr9 1150804 1150837 -141120607 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 734 279 169 24 chr9 1150837 1151450 -141119994 + L1ME3A LINE L1 4126 4867 -1279 528 272 36 15 chr9 1151534 1151729 -141119715 + L1ME3A LINE L1 5749 5947 -223 273 249 85 58 chr9 1151802 1151991 -141119453 + L1ME3A LINE L1 5963 6156 -14 480 190 0 0 chr9 1154033 1154112 -141117332 - FLAM_A SINE Alu -43 99 21 658 276 117 26 chr9 1154194 1154545 -141116899 - L1ME4a LINE L1 -218 5903 5521 22 0 0 0 chr9 1154593 1154615 -141116829 + AT_rich Low_complexity Low_complexity 1 22 0 404 260 164 71 chr9 1154963 1155509 -141115935 - L1ME4a LINE L1 -34 6087 5462 1775 170 0 16 chr9 1155509 1155826 -141115618 - AluJb SINE Alu 0 312 1 404 260 164 71 chr9 1155826 1156001 -141115443 - L1ME4a LINE L1 -659 5462 5305 21 0 0 0 chr9 1156314 1156335 -141115109 + AT_rich Low_complexity Low_complexity 1 21 0 392 289 133 8 chr9 1156633 1156761 -141114683 + MLT1J LTR MaLR 9 152 -359 593 231 8 0 chr9 1156860 1156977 -141114467 + LTR16A1 LTR ERVL 3 120 -337 334 278 44 0 chr9 1157013 1157103 -141114341 + MLT1J LTR MaLR 292 385 -126 2591 187 18 66 chr9 1157374 1157533 -141113911 - LTR27 LTR ERV1 0 636 471 1961 168 60 26 chr9 1157533 1157884 -141113560 - THE1B LTR MaLR -1 363 1 2591 187 18 66 chr9 1157884 1158391 -141113053 - LTR27 LTR ERV1 -165 471 2 224 264 36 45 chr9 1158399 1158509 -141112935 + MIR SINE MIR 100 208 -54 409 296 41 21 chr9 1159004 1159208 -141112236 - ERVL LTR ERVL -1923 3562 3357 255 323 40 0 chr9 1159362 1159461 -141111983 - ERVL LTR ERVL -2584 3180 3078 1059 232 147 4 chr9 1159538 1159810 -141111634 + LTR16C LTR ERVL 79 389 -102 312 235 0 49 chr9 1159835 1159937 -141111507 - L1MC4a LINE L1 -1860 5948 5852 627 125 0 0 chr9 1159969 1160065 -141111379 - L1PA16 LINE L1 0 6166 6071 1018 166 11 6 chr9 1160130 1160311 -141111133 - L1PA15 LINE L1 -100 6065 5884 300 191 16 0 chr9 1160311 1160374 -141111070 + LTR16C LTR ERVL 428 491 0 987 310 82 43 chr9 1160390 1161566 -141109878 - ERVL LTR ERVL -2462 3023 1787 2011 136 10 3 chr9 1161641 1161935 -141109509 - AluSg SINE Alu -14 296 1 1309 180 18 9 chr9 1162623 1162845 -141108599 + MSTB1 LTR MaLR 5 228 -204 529 299 48 11 chr9 1162849 1163036 -141108408 - MIR SINE MIR -19 243 50 459 343 94 9 chr9 1163493 1163726 -141107718 + MIR SINE MIR 10 262 0 2083 130 10 0 chr9 1164627 1164926 -141106518 + AluSq SINE Alu 1 302 -11 24 32 0 0 chr9 1164989 1165020 -141106424 + AT_rich Low_complexity Low_complexity 1 31 0 2360 115 138 26 chr9 1165445 1165829 -141105615 + MSTC LTR MaLR 2 428 0 421 294 39 39 chr9 1165911 1166091 -141105353 + MLT1J LTR MaLR 1 180 -331 2850 49 0 0 chr9 1166143 1166508 -141104936 + L1PA5 LINE L1 5812 6176 0 276 202 83 58 chr9 1166598 1166751 -141104693 + MLT1J LTR MaLR 403 599 -16 2073 171 11 22 chr9 1166865 1167233 -141104211 + MLT1A1 LTR MaLR 1 364 -1 186 343 0 0 chr9 1168267 1168334 -141103110 + MIR SINE MIR 182 248 -14 365 278 28 0 chr9 1168566 1168674 -141102770 + MIR SINE MIR 3 113 -149 243 166 26 0 chr9 1168677 1168778 -141102666 - L1P5 LINE L1 -446 5705 5591 283 287 160 7 chr9 1168778 1168928 -141102516 + MIR SINE MIR 90 262 0 207 0 0 0 chr9 1169838 1169861 -141101583 + (TG)n Simple_repeat Simple_repeat 2 24 0 33 56 0 0 chr9 1169861 1169915 -141101529 + AT_rich Low_complexity Low_complexity 1 54 0 452 72 14 0 chr9 1169916 1169985 -141101459 + (TA)n Simple_repeat Simple_repeat 1 70 0 292 292 36 105 chr9 1171609 1171828 -141099616 + MIR SINE MIR 48 251 -11 391 326 62 26 chr9 1171841 1172068 -141099376 + MIR SINE MIR 18 252 -10 228 233 0 0 chr9 1172717 1172760 -141098684 + polypurine Low_complexity Low_complexity 2 44 0 485 267 2 42 chr9 1173415 1173558 -141097886 + MIR SINE MIR 53 190 -68 507 246 266 10 chr9 1175242 1175445 -141095999 + MIR SINE MIR 3 257 -5 864 221 57 12 chr9 1175815 1176059 -141095385 - L1ME2 LINE L1 -199 5965 5711 304 281 0 12 chr9 1176915 1176997 -141094447 + MER81 DNA DNA 17 97 -17 291 218 173 64 chr9 1177210 1177320 -141094124 - MIR3 SINE MIR -47 161 40 5428 142 30 25 chr9 1177392 1179088 -141092356 + L1MA4 LINE L1 4563 6281 -19 218 273 18 0 chr9 1179127 1179182 -141092262 - MER5A DNA MER1_type -98 91 36 301 275 171 31 chr9 1183356 1183510 -141087934 + MIR SINE MIR 5 193 -69 366 23 0 0 chr9 1183510 1183553 -141087891 + (TG)n Simple_repeat Simple_repeat 2 44 0 301 275 171 31 chr9 1183553 1183591 -141087853 + MIR SINE MIR 193 224 -38 241 122 24 0 chr9 1183637 1183678 -141087766 - L2 LINE L2 -4 3309 3268 425 264 86 6 chr9 1183679 1183842 -141087602 - L2 LINE L2 -1907 1407 1232 282 239 54 33 chr9 1184361 1184453 -141086991 - MLT1H LTR MaLR -16 533 433 383 311 146 0 chr9 1185237 1185388 -141086056 - L3 LINE CR1 -8 1569 1397 210 239 103 65 chr9 1186502 1186657 -141084787 - L3 LINE CR1 -381 1196 1036 296 24 0 24 chr9 1187733 1187775 -141083669 + (TA)n Simple_repeat Simple_repeat 2 42 0 764 332 118 13 chr9 1187778 1188488 -141082956 + ERVL LTR ERVL 3305 4089 -1675 283 341 90 20 chr9 1188517 1188860 -141082584 + ERVL LTR ERVL 4296 4662 -992 495 347 46 28 chr9 1188906 1189364 -141082080 + ERVL LTR ERVL 4770 5235 -529 841 251 132 30 chr9 1189667 1190070 -141081374 + LTR16A1 LTR ERVL 14 457 0 263 267 11 0 chr9 1190205 1190295 -141081149 - LTR16A1 LTR ERVL -339 118 28 257 233 0 12 chr9 1190743 1190829 -141080615 + CT-rich Low_complexity Low_complexity 2 86 0 368 300 130 34 chr9 1192610 1192838 -141078606 - MIR SINE MIR 0 262 3 2168 125 0 0 chr9 1192884 1193173 -141078271 - AluSx SINE Alu -23 289 1 224 402 39 0 chr9 1193325 1193427 -141078017 - L2 LINE L2 -16 3256 3151 215 100 0 25 chr9 1195261 1195301 -141076143 + (TTCA)n Simple_repeat Simple_repeat 1 39 0 4608 170 6 30 chr9 1195539 1196803 -141074641 + L1MB3 LINE L1 4903 6138 -45 1226 188 62 62 chr9 1196803 1196879 -141074565 + AluJo SINE Alu 44 119 -193 180 0 0 0 chr9 1196879 1196899 -141074545 + (TAAA)n Simple_repeat Simple_repeat 4 23 0 1226 188 62 62 chr9 1196899 1197078 -141074366 + AluJo SINE Alu 118 299 -13 331 131 0 0 chr9 1197078 1197139 -141074305 + L1MB2 LINE L1 6111 6171 0 1001 237 113 47 chr9 1197941 1198447 -141072997 - L1ME4a LINE L1 -17 6104 5566 317 289 26 46 chr9 1198621 1198773 -141072671 - L1ME4a LINE L1 -786 5360 5212 1169 167 8 71 chr9 1198848 1199100 -141072344 + MER46A DNA MER2_type 1 236 0 1233 160 60 14 chr9 1199240 1199299 -141072145 - L1MA7 LINE L1 -6 6285 6230 318 26 0 0 chr9 1199299 1199338 -141072106 + (CA)n Simple_repeat Simple_repeat 2 40 0 1233 160 60 14 chr9 1199338 1199559 -141071885 - L1MA7 LINE L1 -61 6230 5992 455 265 87 99 chr9 1199988 1200157 -141071287 - HAL1 LINE L1 -1 2506 2336 2447 45 0 19 chr9 1200157 1200466 -141070978 - AluY SINE Alu -8 303 1 455 265 87 99 chr9 1200466 1200700 -141070744 - HAL1 LINE L1 -171 2336 2108 1914 195 29 43 chr9 1200863 1201355 -141070089 - HAL1 LINE L1 -1959 548 64 26 30 0 0 chr9 1201566 1201599 -141069845 + AT_rich Low_complexity Low_complexity 1 33 0 2381 90 0 0 chr9 1202321 1202622 -141068822 - AluY SINE Alu -10 301 1 433 301 78 41 chr9 1202720 1202939 -141068505 - MIR SINE MIR -16 246 20 241 183 14 28 chr9 1203356 1203427 -141068017 + GA-rich Low_complexity Low_complexity 2 71 0 258 321 71 18 chr9 1203536 1203648 -141067796 + L2 LINE L2 3196 3313 0 208 121 0 0 chr9 1204604 1204637 -141066807 + (CA)n Simple_repeat Simple_repeat 2 34 0 343 96 0 0 chr9 1206932 1206984 -141064460 + L1 LINE L1 5197 5248 -898 996 127 6 11 chr9 1207652 1207833 -141063611 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 584 230 58 40 chr9 1208355 1208529 -141062915 + MER5B DNA MER1_type 2 178 0 261 268 16 71 chr9 1209114 1209241 -141062203 - MER5B DNA MER1_type 0 178 59 554 217 118 80 chr9 1209282 1209661 -141061783 + L1MC4a LINE L1 5523 5823 -298 243 309 18 36 chr9 1209681 1209791 -141061653 + (CATATA)n Simple_repeat Simple_repeat 3 110 0 1516 206 22 43 chr9 1210066 1210435 -141061009 + MLT1A1 LTR MaLR 3 363 -2 273 292 75 50 chr9 1210708 1210869 -141060575 + MIR SINE MIR 70 234 -28 29 78 0 0 chr9 1211502 1211566 -141059878 + AT_rich Low_complexity Low_complexity 1 64 0 1224 189 45 89 chr9 1212040 1212422 -141059022 - MLT1A1 LTR MaLR 0 365 1 694 300 27 5 chr9 1212595 1212815 -141058629 - MIR SINE MIR -13 249 25 1898 161 6 3 chr9 1212975 1213286 -141058158 - AluJb SINE Alu 0 312 1 234 237 34 0 chr9 1216015 1216074 -141055370 + MIR3 SINE MIR 97 157 -51 463 175 88 0 chr9 1216160 1216274 -141055170 - Charlie8 DNA MER1_type -2246 171 48 536 265 21 48 chr9 1216283 1216472 -141054972 + L1MEc LINE L1 36 219 -6177 1932 152 7 0 chr9 1216515 1216811 -141054633 + AluSx SINE Alu 1 298 -14 5646 147 27 6 chr9 1217012 1218910 -141052534 - L1MA8 LINE L1 -137 6154 4213 1171 280 71 32 chr9 1218985 1219581 -141051863 + L2 LINE L2 2694 3313 0 15356 51 2 1 chr9 1220444 1223156 -141048288 - L1PA8 LINE L1 -6 6166 3441 10780 83 21 1 chr9 1223156 1224746 -141046698 + L1P LINE L1 2856 4478 -1668 250 273 281 7 chr9 1224848 1224987 -141046457 - MIR SINE MIR -27 235 59 183 323 71 0 chr9 1225092 1225191 -141046253 - L3b LINE CR1 -242 1341 1236 227 299 0 52 chr9 1227330 1227407 -141044037 - L2 LINE L2 0 3313 3241 1803 150 58 0 chr9 1228985 1229278 -141042166 - AluSx SINE Alu -2 310 1 535 330 42 0 chr9 1229304 1229495 -141041949 - MIR SINE MIR -8 254 56 503 256 173 0 chr9 1230336 1230469 -141040975 + MER5A DNA MER1_type 32 187 -2 2133 127 0 0 chr9 1230944 1231227 -141040217 + AluSx SINE Alu 3 285 -27 270 308 175 21 chr9 1231569 1231712 -141039732 - MIR SINE MIR -17 245 81 432 308 83 0 chr9 1231748 1231868 -141039576 - MIR SINE MIR -62 146 17 302 325 25 44 chr9 1232880 1233040 -141038404 - MIR SINE MIR 0 262 106 487 210 70 38 chr9 1233238 1233395 -141038049 - MER112 DNA MER1_type -6 254 93 42 15 0 44 chr9 1233397 1233465 -141037979 + AT_rich Low_complexity Low_complexity 1 65 0 338 183 61 12 chr9 1233465 1233547 -141037897 - MER112 DNA MER1_type -174 86 1 272 314 97 57 chr9 1233663 1234035 -141037409 - L2 LINE L2 -412 2902 2516 470 276 37 22 chr9 1235814 1235948 -141035496 - L2 LINE L2 -1 3271 3136 195 316 76 59 chr9 1236236 1236473 -141034971 - L2 LINE L2 -485 2829 2589 259 266 141 0 chr9 1236481 1236609 -141034835 - MER117 DNA MER1_type -1 196 51 204 271 121 72 chr9 1236714 1236921 -141034523 - L2 LINE L2 -791 2523 2307 190 238 57 76 chr9 1237008 1237113 -141034331 - L2 LINE L2 -1017 2297 2195 478 206 46 69 chr9 1237984 1238523 -141032921 + L1ME1 LINE L1 5929 6099 -67 1929 148 107 3 chr9 1238137 1238502 -141032942 - MER57A LTR ERV1 0 403 1 319 152 22 196 chr9 1238502 1238619 -141032825 + L1MA10 LINE L1 6190 6326 -8 441 54 0 0 chr9 1238623 1238679 -141032765 + (CA)n Simple_repeat Simple_repeat 2 57 0 540 313 19 6 chr9 1240621 1240781 -141030663 - MIR SINE MIR -23 239 78 515 239 67 35 chr9 1240915 1241170 -141030274 + L1ME3A LINE L1 4774 5036 -1110 719 279 146 18 chr9 1241343 1241952 -141029492 + L1ME3A LINE L1 5258 5944 -226 312 304 87 36 chr9 1241997 1242135 -141029309 + L1ME3A LINE L1 5953 6097 -73 197 317 10 109 chr9 1243529 1243630 -141027814 - MIR SINE MIR -97 111 21 238 150 0 0 chr9 1243691 1243731 -141027713 - MLT1B LTR MaLR -2 388 349 889 178 28 134 chr9 1243757 1244224 -141027220 - MLT1B LTR MaLR -23 444 1 343 307 69 35 chr9 1244793 1245083 -141026361 + LTR16C LTR ERVL 192 491 0 335 302 86 17 chr9 1245170 1245286 -141026158 - L2 LINE L2 -8 3264 3141 979 248 94 46 chr9 1246488 1246923 -141024521 + MLT1C LTR MaLR 4 459 -8 400 168 0 161 chr9 1247738 1247756 -141023688 + L1M2 LINE L1 5407 5426 -865 2185 117 3 13 chr9 1247756 1248090 -141023354 + AluSx SINE Alu 1 312 0 400 168 0 161 chr9 1248090 1248116 -141023328 + L1M2 LINE L1 5426 5455 -836 1852 156 12 23 chr9 1248116 1248462 -141022982 + L1PB4 LINE L1 5815 6156 0 400 168 0 161 chr9 1248462 1248553 -141022891 + L1M2 LINE L1 5455 5521 -770 502 245 129 31 chr9 1248574 1248737 -141022707 - L2 LINE L2 0 3313 3135 191 382 83 0 chr9 1248881 1249025 -141022419 + MIR3 SINE MIR 38 193 -15 1566 228 52 29 chr9 1249183 1249668 -141021776 + MLT1D LTR MaLR 6 386 -4 303 212 71 12 chr9 1249670 1249755 -141021689 + MLT1I LTR MaLR 61 150 -259 2126 185 15 37 chr9 1249965 1250429 -141021015 - MLT2B1 LTR ERVL -64 456 3 248 281 53 35 chr9 1250434 1250548 -141020896 + MLT1I LTR MaLR 256 371 -38 248 288 91 23 chr9 1250750 1250882 -141020562 + MER103 DNA DNA 2 142 -24 891 250 29 16 chr9 1252918 1253162 -141018282 + MLT1H1 LTR MaLR 307 553 -2 192 167 0 0 chr9 1253399 1253429 -141018015 + L2 LINE L2 3233 3262 -51 731 272 83 48 chr9 1253438 1253896 -141017548 - L2 LINE L2 -117 3196 2719 673 167 233 17 chr9 1255963 1256143 -141015301 + MER20 DNA MER1_type 1 219 0 4391 155 37 34 chr9 1256144 1257034 -141014410 - MER54A LTR ERVL -1 900 8 243 61 0 0 chr9 1257091 1257124 -141014320 + (CAAAA)n Simple_repeat Simple_repeat 1 33 0 187 316 26 26 chr9 1257206 1257282 -141014162 + L2 LINE L2 2712 2787 -527 431 297 116 7 chr9 1257400 1257555 -141013889 + MIR SINE MIR 10 181 -81 182 301 86 49 chr9 1258188 1258351 -141013093 + L2 LINE L2 2841 3009 -263 247 286 163 7 chr9 1258838 1258985 -141012459 + MIR SINE MIR 93 262 0 479 307 49 13 chr9 1259742 1259967 -141011477 - Charlie8 DNA MER1_type -2184 233 1 2196 115 36 39 chr9 1260009 1260373 -141011071 + THE1B LTR MaLR 1 363 -1 274 284 7 97 chr9 1261010 1261165 -141010279 + MLT1J LTR MaLR 136 276 -235 2327 289 42 24 chr9 1261167 1262176 -141009268 - MER69B DNA AcHobo -199 1027 1 674 321 91 19 chr9 1262478 1262952 -141008492 - MLT1G1 LTR MaLR -13 582 75 196 244 0 0 chr9 1263059 1263100 -141008344 + MIR SINE MIR 216 256 -6 1761 179 3 38 chr9 1263192 1263511 -141007933 + AluJo SINE Alu 1 308 -4 264 261 43 54 chr9 1264573 1264665 -141006779 - L3 LINE CR1 -12 1565 1475 3550 265 106 35 chr9 1266713 1266877 -141004567 - L2 LINE L2 0 3313 3162 2149 163 89 0 chr9 1266877 1267095 -141004349 - MSTA LTR MaLR 0 428 231 273 57 0 0 chr9 1267095 1267130 -141004314 + (TGGGGG)n Simple_repeat Simple_repeat 5 39 0 2149 163 89 0 chr9 1267130 1267304 -141004140 - MSTA LTR MaLR -197 231 1 3550 265 106 35 chr9 1267304 1268807 -141002637 - L2 LINE L2 -151 3162 1518 222 37 0 0 chr9 1268854 1268881 -141002563 + (TG)n Simple_repeat Simple_repeat 2 28 0 221 344 122 28 chr9 1269246 1269638 -141001806 + L2 LINE L2 2829 3257 -15 425 263 73 39 chr9 1269655 1269860 -141001584 + HAL1 LINE L1 1 212 -2295 2314 261 141 52 chr9 1269928 1270151 -141001293 + HAL1 LINE L1 602 804 -1703 1457 170 7 7 chr9 1270151 1270421 -141001023 - L1PA16 LINE L1 0 6166 5897 2314 261 141 52 chr9 1270421 1271933 -140999511 + HAL1 LINE L1 804 2491 -16 324 272 120 27 chr9 1273184 1273321 -140998123 - MIR3 SINE MIR -23 185 33 1076 316 74 20 chr9 1273829 1274316 -140997128 - LTR33 LTR ERVL -8 513 1 1741 216 48 11 chr9 1274392 1274744 -140996700 + MLT1A1 LTR MaLR 1 365 0 4343 145 2 3 chr9 1275377 1276013 -140995431 - MER41B LTR ERV1 0 635 1 473 151 151 0 chr9 1276117 1276223 -140995221 - MIR SINE MIR -85 177 56 268 290 107 30 chr9 1276303 1276434 -140995010 + MIR SINE MIR 117 257 -5 * 630 256 113 10 chr9 1276424 1276619 -140994825 + MIR SINE MIR 11 225 -37 1039 313 35 28 chr9 1276856 1277256 -140994188 + LTR16A LTR ERVL 26 428 -22 5611 301 70 57 chr9 1277268 1278905 -140992539 + HERV16 LTR ERVL 1 1830 -3166 742 181 7 29 chr9 1278905 1279043 -140992401 + FLAM_A SINE Alu 8 142 0 5611 301 70 57 chr9 1279043 1280319 -140991125 + HERV16 LTR ERVL 1830 3089 -1907 858 286 107 39 chr9 1280467 1281156 -140990288 + HERV16 LTR ERVL 3328 4063 -1701 891 350 68 29 chr9 1281493 1282367 -140989077 + HERV16 LTR ERVL 4419 5326 -328 1031 324 58 15 chr9 1282534 1282944 -140988500 + LTR16A LTR ERVL 23 450 0 331 338 60 25 chr9 1283270 1283471 -140987973 - MIR SINE MIR -26 236 29 1218 231 86 52 chr9 1285067 1285452 -140985992 + MER93a LTR ERV1 1 398 -4 656 225 96 28 chr9 1286479 1286657 -140984787 + MER58C DNA MER1_type 26 215 0 487 281 97 17 chr9 1286660 1286898 -140984546 + MIR SINE MIR 5 261 -1 365 254 21 14 chr9 1286920 1287062 -140984382 + (TA)n Simple_repeat Simple_repeat 1 143 0 216 0 0 0 chr9 1287164 1287188 -140984256 + (TC)n Simple_repeat Simple_repeat 2 25 0 * 398 25 88 0 chr9 1287187 1287267 -140984177 + (TA)n Simple_repeat Simple_repeat 1 87 0 2460 76 0 0 chr9 1288673 1288975 -140982469 + AluSc SINE Alu 1 302 -7 3498 124 24 10 chr9 1288979 1289488 -140981956 - L1PA15 LINE L1 -13 6152 5637 4307 155 65 21 chr9 1289492 1290256 -140981188 - L1MA7 LINE L1 0 6291 5485 2106 122 10 0 chr9 1290256 1290551 -140980893 - AluSp SINE Alu -13 300 3 4307 155 65 21 chr9 1290551 1290629 -140980815 - L1MA7 LINE L1 -806 5485 5412 1350 152 5 9 chr9 1290700 1290910 -140980534 + AluJb SINE Alu 86 294 -18 22 0 0 0 chr9 1290915 1290937 -140980507 + AT_rich Low_complexity Low_complexity 1 22 0 243 205 0 121 chr9 1291214 1291297 -140980147 + LTR67 LTR ERVL 468 540 -17 206 268 56 28 chr9 1291835 1291906 -140979538 + L2 LINE L2 3183 3255 -17 26 0 0 0 chr9 1292660 1292686 -140978758 + AT_rich Low_complexity Low_complexity 1 26 0 30930 114 20 57 chr9 1292736 1299139 -140972305 + L1PA8 LINE L1 12 6166 -6 1551 191 150 24 chr9 1299669 1300082 -140971362 - MLT1C LTR MaLR 0 467 3 319 308 51 51 chr9 1300526 1300682 -140970762 + MER5A DNA MER1_type 33 188 -1 5549 195 38 1 chr9 1302111 1303114 -140968330 - MER45B DNA AcHobo 0 1040 1 227 313 88 0 chr9 1303232 1303312 -140968132 + L2 LINE L2 3006 3092 -221 686 211 0 0 chr9 1303358 1303481 -140967963 - MER5A DNA MER1_type -66 123 1 359 321 60 28 chr9 1303481 1303694 -140967750 + L2 LINE L2 3094 3313 0 1771 191 38 24 chr9 1304184 1304556 -140966888 - MLT1B LTR MaLR -6 384 8 204 314 0 29 chr9 1304562 1304632 -140966812 - MER5A DNA MER1_type -103 86 19 221 56 0 28 chr9 1306935 1306971 -140964473 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 16372 31 1 6 chr9 1306971 1307744 -140963700 - L1PA3 LINE L1 -24 6131 5356 2892 10 0 0 chr9 1307744 1308054 -140963390 - AluYa5 SINE Alu -1 310 1 16372 31 1 6 chr9 1308054 1309977 -140961467 - L1PA3 LINE L1 -799 5356 3441 4538 37 0 3 chr9 1309968 1310535 -140960909 + L1PA3 LINE L1 2848 3412 -2734 * 327 322 49 63 chr9 1310777 1310920 -140960524 - L2 LINE L2 -3 3269 3129 1213 122 0 0 chr9 1311922 1312086 -140959358 + AluSg/x SINE Alu 133 296 -16 250 200 57 43 chr9 1312303 1312373 -140959071 - MIR SINE MIR -9 253 183 236 237 158 26 chr9 1312471 1312585 -140958859 + LTR33 LTR ERVL 116 244 -277 775 259 138 50 chr9 1312756 1313076 -140958368 - MLT1J LTR MaLR -102 409 62 318 276 150 8 chr9 1313162 1313289 -140958155 - MIR SINE MIR -93 169 25 260 325 43 17 chr9 1313588 1313705 -140957739 + MIR SINE MIR 16 135 -73 221 286 25 99 chr9 1315642 1315803 -140955641 + L3 LINE CR1 1139 1287 -290 199 313 71 85 chr9 1315799 1316080 -140955364 + L2 LINE L2 3023 3299 -14 * 22 0 0 0 chr9 1318164 1318186 -140953258 + AT_rich Low_complexity Low_complexity 1 22 0 331 320 67 5 chr9 1319516 1319710 -140951734 - L1MEd LINE L1 -4915 1204 999 813 164 15 0 chr9 1319717 1319851 -140951593 - FRAM SINE Alu -3 173 38 284 352 141 12 chr9 1321002 1321258 -140950186 + L2 LINE L2 2982 3270 -2 7300 40 28 0 chr9 1321544 1322857 -140948587 - L1PA4 LINE L1 0 6155 4824 12067 72 15 0 chr9 1322857 1324493 -140946951 - L1P LINE L1 -4485 1661 1 338 245 71 0 chr9 1325245 1325343 -140946101 - MIR3 SINE MIR -6 202 98 43 47 0 0 chr9 1326486 1326550 -140944894 + AT_rich Low_complexity Low_complexity 1 64 0 327 270 155 34 chr9 1327022 1327170 -140944274 + MIR SINE MIR 90 255 -7 246 182 0 0 chr9 1328434 1328478 -140942966 - MER66B LTR ERV1 -142 344 301 1885 251 45 38 chr9 1329879 1330303 -140941141 - HsTC2a DNA Tc2 -1157 743 310 1668 187 33 3 chr9 1330303 1330603 -140940841 - AluJo SINE Alu -3 309 1 1885 251 45 38 chr9 1330603 1330890 -140940554 - HsTC2a DNA Tc2 -1590 310 27 262 299 46 0 chr9 1330931 1331018 -140940426 - L2 LINE L2 -231 3041 2951 326 340 70 22 chr9 1331703 1331888 -140939556 - L2 LINE L2 -406 2908 2715 2121 125 0 0 chr9 1332358 1332654 -140938790 + AluSx SINE Alu 1 296 -16 2110 126 3 0 chr9 1332865 1333166 -140938278 - AluSc SINE Alu -7 302 1 779 249 120 34 chr9 1333275 1333508 -140937936 - MIR SINE MIR -1 261 9 187 31 62 0 chr9 1335334 1335366 -140936078 + A-rich Low_complexity Low_complexity 2 35 0 495 311 119 11 chr9 1335476 1335653 -140935791 + MIR SINE MIR 23 218 -44 2085 128 0 13 chr9 1336463 1336767 -140934677 - AluSx SINE Alu -10 302 3 2364 101 3 0 chr9 1336908 1337216 -140934228 + AluSc SINE Alu 1 309 0 530 277 42 45 chr9 1337797 1338086 -140933358 + Charlie7 DNA MER1_type 1245 1532 -1080 1000 245 61 114 chr9 1338639 1338779 -140932665 - LTR16C LTR ERVL -2 489 343 2255 98 3 0 chr9 1338779 1339075 -140932369 + AluSx SINE Alu 1 297 -15 1000 245 61 114 chr9 1339075 1339423 -140932021 - LTR16C LTR ERVL -148 343 27 978 304 122 29 chr9 1339757 1340240 -140931204 + MLT1G1 LTR MaLR 1 528 -67 417 177 124 9 chr9 1340369 1340482 -140930962 + L1MD3 LINE L1 7670 7795 -200 413 352 82 15 chr9 1340720 1340916 -140930528 - MIR SINE MIR -52 210 2 225 224 40 7 chr9 1341104 1341259 -140930185 + (TA)n Simple_repeat Simple_repeat 1 160 0 2105 189 88 24 chr9 1341397 1341951 -140929493 - L1MD3 LINE L1 -10 7985 7396 409 189 14 0 chr9 1341951 1342025 -140929419 - MLT1F1 LTR MaLR -457 110 36 2009 138 3 3 chr9 1342391 1342688 -140928756 - AluJb SINE Alu -15 297 1 236 223 53 0 chr9 1342759 1342853 -140928591 + (TA)n Simple_repeat Simple_repeat 1 99 0 465 311 53 24 chr9 1342881 1343090 -140928354 - MIR SINE MIR -1 261 47 2705 94 13 5 chr9 1343390 1343762 -140927682 - THE1C LTR MaLR 0 375 1 465 62 0 0 chr9 1344020 1344085 -140927359 + (GA)n Simple_repeat Simple_repeat 2 66 0 224 364 91 8 chr9 1346038 1346170 -140925274 + MIR3 SINE MIR 60 202 -6 203 286 76 59 chr9 1347458 1347577 -140923867 - L3 LINE CR1 -31 1546 1426 432 274 35 30 chr9 1347604 1347805 -140923639 - Charlie8 DNA MER1_type -9 2408 2207 913 239 85 96 chr9 1347851 1348299 -140923145 - Charlie8 DNA MER1_type -1973 444 2 1181 206 0 26 chr9 1348309 1348537 -140922907 + MER58A DNA MER1_type 2 223 -1 262 267 13 13 chr9 1348573 1348648 -140922796 - L3 LINE CR1 -180 1397 1323 612 327 88 22 chr9 1349042 1349494 -140921950 + L2 LINE L2 2832 3313 0 351 277 119 0 chr9 1349850 1349951 -140921493 - MIR SINE MIR -62 146 34 6506 83 3 28 chr9 1350058 1350875 -140920569 - L1PA10 LINE L1 0 6168 5332 2274 103 0 3 chr9 1350875 1351175 -140920269 - AluY SINE Alu -12 299 1 6506 83 3 28 chr9 1351175 1352278 -140919166 - L1PA10 LINE L1 -836 5332 4284 1117 154 18 0 chr9 1352285 1352454 -140918990 + AluSg/x SINE Alu 132 303 -9 909 225 22 13 chr9 1352457 1352688 -140918756 + L1ME1 LINE L1 5891 6123 -43 202 319 26 73 chr9 1352757 1352949 -140918495 - MIR SINE MIR -57 205 19 741 273 80 8 chr9 1353060 1353298 -140918146 - MIR SINE MIR 0 262 8 831 249 131 24 chr9 1353999 1354328 -140917116 - L2 LINE L2 -1 3312 2949 650 378 114 0 chr9 1354475 1354869 -140916575 - L3 LINE CR1 -1104 473 35 332 285 115 6 chr9 1354953 1355118 -140916326 - L1ME4a LINE L1 -4 6117 5935 266 247 55 0 chr9 1356019 1356092 -140915352 + L2 LINE L2 3197 3273 -40 1038 315 57 25 chr9 1356136 1356612 -140914832 - L2 LINE L2 0 3313 2823 980 235 111 60 chr9 1356609 1357022 -140914422 - L2 LINE L2 -876 2438 2005 * 241 313 107 0 chr9 1357797 1357909 -140913535 - MIR SINE MIR -70 192 69 239 222 0 0 chr9 1358582 1358645 -140912799 - LTR66 LTR ERVL -149 461 399 186 43 0 0 chr9 1358653 1358676 -140912768 + (TCTA)n Simple_repeat Simple_repeat 4 26 0 27 29 0 0 chr9 1359407 1359441 -140912003 + AT_rich Low_complexity Low_complexity 1 34 0 351 362 74 23 chr9 1360262 1360746 -140910698 - L2 LINE L2 -914 2400 1892 204 367 22 11 chr9 1361081 1361171 -140910273 + L2 LINE L2 3168 3258 -14 260 333 55 56 chr9 1361211 1361412 -140910032 - MIR SINE MIR -5 203 1 468 286 64 71 chr9 1362105 1362388 -140909056 + L2 LINE L2 2992 3272 0 470 287 6 43 chr9 1362505 1362669 -140908775 - MIR SINE MIR -40 222 65 296 188 14 0 chr9 1362748 1362817 -140908627 + CT-rich Low_complexity Low_complexity 4 73 0 262 306 41 10 chr9 1362849 1362947 -140908497 + MIR SINE MIR 54 154 -108 424 137 1 35 chr9 1363035 1363124 -140908320 - L1MC3 LINE L1 -15 7770 6238 508 261 113 54 chr9 1363127 1363330 -140908114 - MIR SINE MIR -46 216 2 1577 201 35 32 chr9 1364537 1364910 -140906534 + MLT1A2 LTR MaLR 1 374 0 21 57 0 0 chr9 1366699 1366734 -140904710 + AT_rich Low_complexity Low_complexity 1 35 0 824 295 66 25 chr9 1366824 1367503 -140903941 + HAL1b LINE L1 89 795 -553 319 212 26 26 chr9 1367580 1367693 -140903751 - HAL1b LINE L1 -341 1007 895 1310 210 95 20 chr9 1367702 1368092 -140903352 - Charlie4a DNA MER1_type -63 445 27 1449 149 74 45 chr9 1370075 1370384 -140901060 + MLT2D LTR ERVL 73 534 -20 414 0 0 0 chr9 1370397 1370443 -140901001 + (CA)n Simple_repeat Simple_repeat 1 46 0 728 282 102 50 chr9 1370744 1371262 -140900182 + L2 LINE L2 527 1071 -2243 889 199 22 0 chr9 1371782 1371960 -140899484 - MER3 DNA MER1_type -19 190 9 767 196 136 11 chr9 1371960 1372144 -140899300 + MER58C DNA MER1_type 1 207 -8 213 379 70 9 chr9 1372516 1372730 -140898714 - L2 LINE L2 -234 3038 2812 201 39 0 0 chr9 1374795 1374821 -140896623 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 3071 166 35 35 chr9 1374822 1375448 -140895996 - MER73 LTR ERVL -18 626 1 3613 119 11 0 chr9 1375620 1376158 -140895286 - L1PA13 LINE L1 -56 6107 5564 2583 32 0 10 chr9 1376424 1376737 -140894707 + AluY SINE Alu 1 310 -1 303 272 174 0 chr9 1376827 1376919 -140894525 + MIR SINE MIR 126 233 -29 216 261 0 46 chr9 1377128 1377193 -140894251 + MIR SINE MIR 157 218 -44 10298 183 48 18 chr9 1377521 1380106 -140891338 - L1MA4A LINE L1 -5 6161 3654 1083 45 0 0 chr9 1380106 1380238 -140891206 - L1PA3 LINE L1 -3 6152 6021 10298 183 48 18 chr9 1380238 1380446 -140890998 - L1MA4A LINE L1 -2512 3654 3454 2006 118 37 0 chr9 1380446 1380742 -140890702 - AluSx SINE Alu -5 307 1 10298 183 48 18 chr9 1380742 1381153 -140890291 - L1MA4A LINE L1 -2712 3454 2849 2184 238 70 57 chr9 1381180 1382320 -140889124 - L1ME LINE L1 -369 5866 4676 279 100 0 0 chr9 1382320 1382360 -140889084 + U5 snRNA snRNA 3 42 -74 2184 238 70 57 chr9 1382360 1382595 -140888849 - L1ME LINE L1 -1559 4676 4446 4690 220 72 32 chr9 1382608 1384341 -140887103 - L1 LINE L1 -2659 4906 3100 2854 272 42 11 chr9 1384353 1385398 -140886046 - L1ME LINE L1 -1802 4413 3337 460 155 0 21 chr9 1386007 1386104 -140885340 - L1MA10 LINE L1 0 6334 6240 268 185 77 0 chr9 1386112 1386177 -140885267 - L1P LINE L1 -2890 3256 3187 1667 248 83 17 chr9 1386190 1386939 -140884505 - L1ME LINE L1 -3143 3072 2275 665 167 32 24 chr9 1386966 1387092 -140884352 + FLAM_C SINE Alu 10 136 -7 2285 94 0 0 chr9 1387094 1387380 -140884064 + AluSp SINE Alu 1 286 -27 1936 83 0 0 chr9 1387380 1387644 -140883800 - THE1B-int LTR MaLR -1316 264 1 2014 132 79 15 chr9 1387644 1387986 -140883458 - THE1B LTR MaLR 0 364 1 480 272 230 25 chr9 1388084 1388585 -140882859 - L1ME LINE L1 -4925 1471 1074 1912 137 20 3 chr9 1388585 1388877 -140882567 - AluSx SINE Alu -15 297 1 480 272 230 25 chr9 1388877 1389091 -140882353 - L1ME LINE L1 -5322 1074 609 1802 211 87 27 chr9 1389237 1389791 -140881653 + L1MC4 LINE L1 7443 8029 -13 346 299 35 62 chr9 1391245 1391389 -140880055 - MIR SINE MIR -108 154 15 721 330 83 29 chr9 1391460 1391942 -140879502 - L2 LINE L2 -2 3311 2804 239 211 0 19 chr9 1391991 1392043 -140879401 + L2 LINE L2 2715 2765 -549 253 364 76 0 chr9 1392616 1392734 -140878710 + L2 LINE L2 3184 3310 -3 199 234 0 117 chr9 1392743 1392820 -140878624 + MIR SINE MIR 58 125 -83 612 283 31 22 chr9 1392891 1393117 -140878327 - MIR SINE MIR -17 245 18 2226 90 6 40 chr9 1393169 1393531 -140877913 - AluY SINE Alu 0 351 1 4276 178 79 13 chr9 1393629 1394896 -140876548 - L1MA8 LINE L1 -4 6287 4936 2462 136 45 12 chr9 1395894 1396312 -140875132 + MSTB1 LTR MaLR 1 432 0 221 344 0 0 chr9 1396363 1396427 -140875017 - MIR SINE MIR -60 148 85 251 222 19 0 chr9 1396499 1396609 -140874835 + CT-rich Low_complexity Low_complexity 1 112 0 210 147 13 53 chr9 1396642 1396717 -140874727 + CT-rich Low_complexity Low_complexity 2 73 0 27 73 0 0 chr9 1396960 1397015 -140874429 + AT_rich Low_complexity Low_complexity 1 55 0 24 32 0 0 chr9 1397063 1397094 -140874350 + AT_rich Low_complexity Low_complexity 1 31 0 1253 124 21 5 chr9 1397297 1397491 -140873953 - L1PA13 LINE L1 -58 6105 5909 1386 247 92 13 chr9 1397535 1398135 -140873309 + MER114 LTR ERV 1 647 -1 598 229 52 60 chr9 1398426 1398675 -140872769 - L1MD2 LINE L1 -17 6342 6096 1196 221 56 21 chr9 1398676 1399007 -140872437 - Tigger7 DNA MER2_type 0 2491 2 1621 246 78 32 chr9 1399008 1399505 -140871939 - L1MD2 LINE L1 -263 6096 5577 1127 233 31 24 chr9 1399708 1399996 -140871448 - L1MD2 LINE L1 -651 5591 5302 2121 50 28 7 chr9 1399998 1400280 -140871164 - L1PA4 LINE L1 0 6155 5868 559 0 15 0 chr9 1400280 1400346 -140871098 + L1PA4 LINE L1 5797 5863 -291 1758 259 56 17 chr9 1400351 1401014 -140870430 - L1MD2 LINE L1 -842 5304 4616 3349 191 59 76 chr9 1401042 1402100 -140869344 - L1MB8 LINE L1 0 6178 5115 183 42 0 0 chr9 1402100 1402124 -140869320 + (TTG)n Simple_repeat Simple_repeat 3 26 0 3349 191 59 76 chr9 1402124 1402179 -140869265 - L1MB8 LINE L1 -1063 5115 5061 * 3382 200 35 15 chr9 1402175 1403364 -140868080 + L1MB5 LINE L1 4699 5953 -225 4357 152 53 13 chr9 1403364 1404158 -140867286 + LTR1B LTR ERV1 1 826 0 3382 200 35 15 chr9 1404158 1404370 -140867074 + L1MB5 LINE L1 5953 6159 -19 855 345 69 35 chr9 1405186 1405734 -140865710 - L3 LINE CR1 -1 1576 1010 386 325 24 16 chr9 1405756 1405879 -140865565 + L2 LINE L2 3141 3264 -8 181 347 0 14 chr9 1406392 1406464 -140864980 - MIR SINE MIR -118 90 20 1929 277 43 5 chr9 1408267 1408852 -140862592 - L1ME3A LINE L1 -23 6147 5541 1932 128 11 3 chr9 1409175 1409457 -140861987 + AluSx SINE Alu 4 287 -25 201 268 0 0 chr9 1409750 1409791 -140861653 - L2 LINE L2 -14 3258 3218 482 239 127 0 chr9 1411098 1411232 -140860212 + MER69 DNA AcHobo 6 156 -1070 1342 99 16 5 chr9 1411254 1411446 -140859998 - AluSc SINE Alu -12 297 104 230 304 64 60 chr9 1411480 1411730 -140859714 - L2 LINE L2 -205 3067 2817 950 88 22 15 chr9 1413331 1413468 -140857976 + MER85 DNA T2_type 1 138 -1 1726 168 42 3 chr9 1413496 1413782 -140857662 - MER50-int LTR ERV1 -6902 303 7 3891 129 32 71 chr9 1413782 1414533 -140856911 - MER50 LTR ERV1 -12 722 1 542 252 60 33 chr9 1414709 1414860 -140856584 + MIR SINE MIR 3 157 -105 21 36 0 0 chr9 1414928 1414956 -140856488 + AT_rich Low_complexity Low_complexity 1 28 0 775 195 15 135 chr9 1415021 1415355 -140856089 - TAR1 Satellite telomeric -1815 296 3 * 1459 186 49 34 chr9 1415150 1415500 -140855944 - LTR60 LTR ERV1 -3 583 229 709 169 83 156 chr9 1415500 1415801 -140855643 - LTR60 LTR ERV1 -307 279 1 792 142 0 8 chr9 1416466 1416586 -140854858 + THE1C LTR MaLR 1 119 -256 * 1049 82 0 0 chr9 1416581 1416715 -140854729 + THE1C LTR MaLR 242 375 0 1693 239 69 40 chr9 1418123 1418824 -140852620 - MER20B DNA MER1_type -12 771 24 1140 252 145 24 chr9 1418824 1419237 -140852207 - LTR16B LTR ERVL 0 464 2 3906 135 64 70 chr9 1420328 1421112 -140850332 + LTR1 LTR ERV1 7 785 0 332 234 58 88 chr9 1422465 1422602 -140848842 + L2 LINE L2 3122 3254 -18 650 329 82 47 chr9 1423031 1423390 -140848054 - MLT1K LTR MaLR -17 571 185 1548 155 59 98 chr9 1423390 1423796 -140847648 + MLT1B LTR MaLR 1 390 0 650 329 82 47 chr9 1423796 1423971 -140847473 - MLT1K LTR MaLR -403 185 18 2996 141 22 59 chr9 1424565 1424796 -140846648 + MER4B LTR ERV1 1 239 -371 1103 122 168 0 chr9 1424796 1424992 -140846452 + MER30 DNA MER1_type 1 229 -1 2996 141 22 59 chr9 1424992 1425356 -140846088 + MER4B LTR ERV1 239 574 -36 232 296 61 10 chr9 1425558 1425656 -140845788 + LTR33 LTR ERVL 112 214 -307 561 266 44 25 chr9 1425710 1425913 -140845531 + LTR33 LTR ERVL 308 514 -7 477 246 10 74 chr9 1426024 1426227 -140845217 + MIR SINE MIR 63 252 -10 938 303 92 10 chr9 1426273 1426673 -140844771 - LTR16A LTR ERVL 0 450 18 1702 310 63 31 chr9 1426992 1428029 -140843415 - HERV16 LTR ERVL -300 5026 4066 507 342 38 14 chr9 1428365 1428746 -140842698 - HERV16 LTR ERVL -2060 3704 3288 1096 172 5 15 chr9 1479486 1479689 -140791755 + ERVL-B2 LTR ERVL 4141 4341 -1423 308 102 0 17 chr9 1479687 1479746 -140791698 + ERVL-B2 LTR ERVL 5699 5756 -8 * 2277 198 4 26 chr9 1479746 1480215 -140791229 + MLT2B2 LTR ERVL 9 467 -48 244 182 18 36 chr9 1480215 1480270 -140791174 + (CCTA)n Simple_repeat Simple_repeat 4 57 0 4199 189 40 9 chr9 1480624 1481974 -140789470 - L1MB5 LINE L1 0 6174 4789 540 273 68 18 chr9 1483675 1483854 -140787590 + MIR SINE MIR 20 211 -51 28 48 0 0 chr9 1484303 1484345 -140787099 + AT_rich Low_complexity Low_complexity 1 42 0 23 0 0 0 chr9 1484474 1484497 -140786947 + AT_rich Low_complexity Low_complexity 1 23 0 197 211 18 0 chr9 1484658 1484715 -140786729 + (CA)n Simple_repeat Simple_repeat 2 59 0 215 227 0 0 chr9 1484732 1484776 -140786668 + (CATATA)n Simple_repeat Simple_repeat 2 45 0 898 226 19 33 chr9 1484776 1484988 -140786456 + MER63A DNA MER1_type 2 210 0 788 93 0 0 chr9 1485032 1485139 -140786305 - MER4E LTR ERV1 0 766 660 620 111 0 0 chr9 1485137 1485226 -140786218 - MER4E LTR ERV1 -562 217 129 809 233 38 38 chr9 1485226 1485518 -140785926 + LTR13 LTR ERVK 1 292 -715 495 245 1 2 chr9 1485523 1485667 -140785777 - L1MA10 LINE L1 -23 6143 6003 288 301 76 51 chr9 1486626 1486809 -140784635 - MIR SINE MIR -42 220 37 6364 168 27 7 chr9 1487870 1490068 -140781376 - L1PB3 LINE L1 -1 6153 3911 237 322 26 0 chr9 1490734 1490849 -140780595 + LTR40c LTR ERVL 171 288 -177 815 122 0 0 chr9 1490884 1491007 -140780437 - MLT2A2 LTR ERVL -30 423 301 41015 48 4 1 chr9 1491568 1497702 -140773742 + L1PA4 LINE L1 4 6155 0 302 300 100 19 chr9 1497849 1498009 -140773435 + L1ME4a LINE L1 5255 5427 -932 514 302 56 28 chr9 1498085 1498443 -140773001 + L1ME4a LINE L1 5566 5933 -188 759 195 7 7 chr9 1498797 1498946 -140772498 + MER106B DNA MER1_type 7 155 -904 4624 178 30 51 chr9 1498975 1499135 -140772309 - L1MA9 LINE L1 0 6548 6386 1720 99 114 33 chr9 1499135 1499408 -140772036 - AluSg SINE Alu -15 295 1 4624 178 30 51 chr9 1499408 1501420 -140770024 - L1MA9 LINE L1 -162 6386 4425 905 217 54 27 chr9 1501601 1502134 -140769310 - L1MA9 LINE L1 -4177 2206 1146 40511 38 21 1 chr9 1502152 1508181 -140763263 - L1PA3 LINE L1 -1 6154 3 2335 257 46 33 chr9 1508181 1509497 -140761947 - L1M3c LINE L1 -4739 2298 958 1359 193 0 7 chr9 1509497 1509771 -140761673 - L1M3c LINE L1 -6758 272 1 24 77 0 0 chr9 1509783 1509835 -140761609 + AT_rich Low_complexity Low_complexity 1 52 0 240 100 0 0 chr9 1510252 1510292 -140761152 + (CA)n Simple_repeat Simple_repeat 2 41 0 739 223 81 12 chr9 1511457 1511584 -140759860 - L1MD3 LINE L1 -2 7993 7876 2090 141 0 0 chr9 1511584 1511888 -140759556 + AluSx SINE Alu 1 304 -8 739 223 81 12 chr9 1511888 1512007 -140759437 - L1MD3 LINE L1 -119 7876 7730 462 303 8 8 chr9 1512306 1512428 -140759016 - MIR3 SINE MIR -29 179 58 236 170 19 0 chr9 1512491 1512544 -140758900 + (TA)n Simple_repeat Simple_repeat 2 55 0 314 341 8 38 chr9 1513432 1513564 -140757880 + MIR SINE MIR 8 135 -73 498 228 128 13 chr9 1513990 1514139 -140757305 + MLT1D LTR MaLR 1 166 -339 372 174 76 0 chr9 1514152 1514244 -140757200 + MLT1D LTR MaLR 407 505 0 325 325 118 14 chr9 1514549 1514761 -140756683 + MIR SINE MIR 14 247 -15 262 316 53 0 chr9 1514875 1514951 -140756493 - L2 LINE L2 -35 3278 3199 2276 101 29 9 chr9 1515681 1516029 -140755415 - L1PA7 LINE L1 -1 6153 5799 1157 266 91 54 chr9 1516072 1516587 -140754857 - L1M4 LINE L1 -5856 686 153 * 25930 50 15 1 chr9 1516585 1520843 -140750601 - L1PA5 LINE L1 0 6154 1834 349 205 13 0 chr9 1520943 1521021 -140750423 + L1 LINE L1 4138 4216 -1930 1324 183 9 68 chr9 1521044 1521367 -140750077 - MLT2A2 LTR ERVL -149 304 1 230 277 42 42 chr9 1521384 1521503 -140749941 + LTR40b LTR ERVL 305 423 -39 238 154 77 43 chr9 1522351 1522468 -140748976 + (TTAA)n Simple_repeat Simple_repeat 1 121 0 181 330 75 32 chr9 1522481 1522575 -140748869 - L2 LINE L2 -17 3255 3158 392 332 108 56 chr9 1522738 1523006 -140748438 + L2 LINE L2 2987 3268 -4 2480 211 46 48 chr9 1523104 1523938 -140747506 + L1ME1 LINE L1 5254 6243 -91 201 154 0 0 chr9 1523949 1523988 -140747456 + (TG)n Simple_repeat Simple_repeat 2 40 0 28 86 0 0 chr9 1524746 1524816 -140746628 + AT_rich Low_complexity Low_complexity 1 70 0 207 100 0 0 chr9 1525030 1525060 -140746384 + (TG)n Simple_repeat Simple_repeat 1 30 0 266 296 0 0 chr9 1525060 1525158 -140746286 + GA-rich Low_complexity Low_complexity 2 99 0 467 360 7 7 chr9 1525989 1526142 -140745302 + MIR SINE MIR 33 185 -77 1194 131 23 0 chr9 1526786 1527048 -140744396 - L1MA10 LINE L1 -568 5766 5420 2527 184 19 25 chr9 1527048 1527614 -140743830 + L1MA10 LINE L1 5762 6324 -10 224 240 53 27 chr9 1527814 1527889 -140743555 - MIR SINE MIR -30 232 156 433 336 159 17 chr9 1527950 1528366 -140743078 - L2 LINE L2 0 3313 2839 758 263 56 117 chr9 1529001 1529538 -140741906 + LTR33 LTR ERVL 3 506 -15 398 236 154 0 chr9 1529620 1529730 -140741714 - MIR SINE MIR -99 163 37 1917 275 91 15 chr9 1530515 1531433 -140740011 - L1ME3A LINE L1 -5 6165 5175 376 183 238 16 chr9 1531578 1531704 -140739740 + MER21B LTR ERV1 662 815 -48 560 186 180 0 chr9 1531766 1531927 -140739517 + L1MC5 LINE L1 7712 7901 -60 481 335 17 30 chr9 1531945 1532181 -140739263 - L2 LINE L2 -1480 1834 1602 732 292 83 74 chr9 1532207 1532490 -140738954 - L2 LINE L2 -340 2974 2695 417 20 0 0 chr9 1532490 1532540 -140738904 + (TG)n Simple_repeat Simple_repeat 2 51 0 732 292 83 74 chr9 1532540 1532666 -140738778 - L2 LINE L2 -619 2695 2558 1583 249 46 20 chr9 1532666 1533119 -140738325 + MLT1C LTR MaLR 1 465 -2 732 292 83 74 chr9 1533119 1533153 -140738291 - L2 LINE L2 -756 2558 2526 58 102 0 0 chr9 1533153 1533358 -140738086 + AT_rich Low_complexity Low_complexity 1 205 0 403 267 91 91 chr9 1533488 1533806 -140737638 + L1ME4a LINE L1 4669 4986 -1160 42951 48 4 1 chr9 1533912 1540046 -140731398 + L1PA4 LINE L1 4 6155 0 228 300 9 9 chr9 1540243 1540353 -140731091 + L1P LINE L1 5318 5427 -724 597 304 50 22 chr9 1540429 1540787 -140730657 + L1ME4a LINE L1 5566 5933 -188 810 195 7 7 chr9 1541141 1541290 -140730154 + MER106B DNA MER1_type 7 155 -904 4951 178 30 51 chr9 1541319 1541479 -140729965 - L1MA9 LINE L1 0 6548 6386 1704 99 114 33 chr9 1541479 1541752 -140729692 - AluSg SINE Alu -15 295 1 4951 178 30 51 chr9 1541752 1543764 -140727680 - L1MA9 LINE L1 -162 6386 4425 972 227 66 32 chr9 1543752 1544478 -140726966 - L1MA9 LINE L1 -4177 2206 1146 * 40220 63 12 5 chr9 1544496 1550595 -140720849 - L1PA2 LINE L1 -1 6154 11 490 256 17 59 chr9 1550615 1550848 -140720596 - L1ME LINE L1 -690 5480 5256 314 304 81 40 chr9 1550857 1551005 -140720439 + MLT1D LTR MaLR 3 156 -349 1441 240 58 0 chr9 1551033 1551467 -140719977 + L1MB5 LINE L1 4114 4572 -1574 4433 179 21 26 chr9 1551477 1552383 -140719061 + L1MB5 LINE L1 5254 6154 -20 478 285 60 35 chr9 1552446 1552646 -140718798 - MLT1J2 LTR MaLR -241 209 5 242 297 66 22 chr9 1552649 1552740 -140718704 + MER5A DNA MER1_type 93 187 -2 359 21 21 0 chr9 1553709 1553757 -140717687 + (CA)n Simple_repeat Simple_repeat 2 50 0 3611 208 49 76 chr9 1553804 1553896 -140717548 + L1MB8 LINE L1 4021 4114 -2032 3625 72 4 6 chr9 1553896 1554383 -140717061 - L1PA8 LINE L1 -3 6169 5684 3611 208 49 76 chr9 1554383 1555587 -140715857 + L1MB8 LINE L1 4114 5282 -864 23 78 0 0 chr9 1555588 1555639 -140715805 + AT_rich Low_complexity Low_complexity 1 51 0 3187 192 74 44 chr9 1555694 1556560 -140714884 + L1MB8 LINE L1 5285 6176 -2 243 0 0 0 chr9 1556683 1556710 -140714734 + (TG)n Simple_repeat Simple_repeat 2 28 0 1496 208 38 38 chr9 1557314 1557661 -140713783 - MLT1A1 LTR MaLR 0 365 19 418 296 13 72 chr9 1557726 1557878 -140713566 + MIR SINE MIR 76 218 -44 5417 128 20 9 chr9 1558047 1558938 -140712506 - L1PB3 LINE L1 0 6154 5254 338 336 41 0 chr9 1559010 1559132 -140712312 - MIR3 SINE MIR -21 187 61 184 156 47 94 chr9 1559786 1559850 -140711594 + MIR SINE MIR 70 130 -132 193 311 0 0 chr9 1560210 1560255 -140711189 + MIR SINE MIR 196 240 -22 * 209 308 0 0 chr9 1560221 1560273 -140711171 + L2 LINE L2 3252 3303 -10 1958 145 7 0 chr9 1562001 1562297 -140709147 + AluSx SINE Alu 1 298 -14 411 196 38 0 chr9 1562301 1562459 -140708985 + (TA)n Simple_repeat Simple_repeat 2 165 0 469 211 11 0 chr9 1562474 1562564 -140708880 - LTR16C LTR ERVL -2 489 399 495 235 38 0 chr9 1565192 1565324 -140706120 - Charlie4 DNA MER1_type -1 1960 1824 911 182 21 42 chr9 1566286 1566478 -140704966 - MER5A DNA MER1_type -1 188 1 192 200 0 0 chr9 1566675 1566720 -140704724 + T-rich Low_complexity Low_complexity 1 45 0 25 0 0 0 chr9 1569102 1569127 -140702317 + AT_rich Low_complexity Low_complexity 1 25 0 595 242 149 6 chr9 1570027 1570188 -140701256 - MER5A DNA MER1_type 0 189 6 26 0 0 0 chr9 1570784 1570810 -140700634 + AT_rich Low_complexity Low_complexity 1 26 0 649 87 39 0 chr9 1571113 1571217 -140700227 + L1MA3 LINE L1 6198 6305 0 636 235 15 0 chr9 1571337 1571469 -140699975 + MER94 DNA DNA 1 134 0 2155 101 0 10 chr9 1571514 1571812 -140699632 + AluSg SINE Alu 6 300 -10 211 268 106 101 chr9 1571833 1572031 -140699413 - L3 LINE CR1 -100 1477 1279 430 292 5 103 chr9 1572201 1572396 -140699048 - L3 LINE CR1 -30 1547 1372 293 340 64 32 chr9 1573111 1573299 -140698145 + MIR3 SINE MIR 10 203 -5 1796 166 7 3 chr9 1574023 1574319 -140697125 - AluJb SINE Alu -15 297 1 381 307 92 0 chr9 1574823 1574986 -140696458 + Charlie8 DNA MER1_type 96 273 -2144 315 295 150 52 chr9 1576487 1576680 -140694764 + MIR SINE MIR 46 257 -5 205 325 163 12 chr9 1577142 1577302 -140694142 + L2 LINE L2 2157 2340 -974 2478 174 8 32 chr9 1577356 1577828 -140693616 - MER70B LTR ERVL -117 461 1 395 366 31 26 chr9 1578174 1578541 -140692903 + L2 LINE L2 2693 3053 -219 228 241 48 24 chr9 1578585 1578668 -140692776 + MLT1I LTR MaLR 130 214 -195 268 385 117 6 chr9 1578845 1579024 -140692420 + L2 LINE L2 3070 3268 -4 629 302 155 22 chr9 1579231 1579632 -140691812 - LTR33 LTR ERVL -2 519 66 408 261 137 70 chr9 1579774 1580015 -140691429 + L2 LINE L2 2980 3236 -36 199 283 0 0 chr9 1580503 1580556 -140690888 + MIR SINE MIR 76 128 -80 198 0 0 0 chr9 1581633 1581655 -140689789 + (CAG)n Simple_repeat Simple_repeat 1 22 0 420 284 43 7 chr9 1582171 1582312 -140689132 - L2 LINE L2 0 3313 3168 434 345 40 22 chr9 1582642 1582685 -140688759 - L2 LINE L2 -543 2771 2730 477 277 9 0 chr9 1582685 1582797 -140688647 - MER81 DNA DNA -1 113 1 434 345 40 22 chr9 1582797 1582979 -140688465 - L2 LINE L2 -584 2730 2542 1743 168 58 28 chr9 1583032 1583396 -140688048 - THE1C LTR MaLR 0 375 1 5122 132 11 19 chr9 1583396 1584244 -140687200 - THE1C-int LTR MaLR 0 1580 740 1817 116 21 0 chr9 1584248 1584533 -140686911 - THE1C-int LTR MaLR -1184 396 106 5342 108 13 12 chr9 1584533 1585353 -140686091 + HERVL-B3 LTR ERVL 4834 5654 0 1931 215 50 59 chr9 1585353 1585912 -140685532 + MLT2B3 LTR ERVL 1 554 0 807 309 139 14 chr9 1585935 1586440 -140685004 - L2 LINE L2 -826 2488 1921 452 111 0 0 chr9 1586441 1586504 -140684940 + AluJ/FRAM SINE Alu 233 295 -17 201 375 60 39 chr9 1586512 1586744 -140684700 - L2 LINE L2 -1391 1923 1687 250 276 43 43 chr9 1586920 1587036 -140684408 + L2 LINE L2 2595 2710 -604 735 224 37 8 chr9 1587042 1587287 -140684157 + L1MD2 LINE L1 2346 2597 -3943 3408 213 42 21 chr9 1587292 1587492 -140683952 + L1MD2 LINE L1 5482 5676 -1077 2068 84 7 15 chr9 1587492 1587766 -140683678 + AluY SINE Alu 22 293 -18 3408 213 42 21 chr9 1587766 1588584 -140682860 + L1MD2 LINE L1 5676 6538 -215 346 224 10 0 chr9 1588573 1588671 -140682773 + L1MC1 LINE L1 5204 5302 -844 * 271 203 0 0 chr9 1588712 1588771 -140682673 + L1MC1 LINE L1 5292 5350 -983 1019 153 20 10 chr9 1588781 1588977 -140682467 + L1MC1 LINE L1 5571 5768 -565 3065 180 38 19 chr9 1588981 1589579 -140681865 + L1MC1 LINE L1 5356 5941 -301 6220 57 1 1 chr9 1589579 1590354 -140681090 + L1PA6 LINE L1 5367 6141 -13 3065 180 38 19 chr9 1590354 1590379 -140681065 + L1MC1 LINE L1 5941 5964 -278 1671 205 19 3 chr9 1590379 1590745 -140680699 + L1MC1 LINE L1 5962 6333 0 3065 180 38 19 chr9 1590745 1590995 -140680449 + L1MC1 LINE L1 5964 6242 0 654 329 111 23 chr9 1590997 1591111 -140680333 + L2 LINE L2 2708 2811 -502 186 43 0 0 chr9 1591111 1591134 -140680310 + (TC)n Simple_repeat Simple_repeat 2 24 0 654 329 111 23 chr9 1591134 1591572 -140679872 + L2 LINE L2 2811 3312 -1 1075 149 97 154 chr9 1592281 1592664 -140678780 - MLT1A2 LTR MaLR -12 362 2 2897 6 0 0 chr9 1592909 1593223 -140678221 - AluYb8 SINE Alu -4 314 1 1635 264 128 38 chr9 1593322 1594273 -140677171 + L2 LINE L2 2032 3120 -193 2245 162 26 33 chr9 1594273 1594693 -140676751 + MER47B DNA MER2_type 1 417 -1 1635 264 128 38 chr9 1594693 1594902 -140676542 + L2 LINE L2 3120 3309 -4 197 200 25 0 chr9 1594905 1594945 -140676499 - MIR SINE MIR -63 145 105 2016 107 13 3 chr9 1594997 1595314 -140676130 - L1PA15 LINE L1 -582 5583 5264 3417 130 23 5 chr9 1595314 1595875 -140675569 + L1PA15 LINE L1 5595 6165 0 394 325 12 35 chr9 1597372 1597541 -140673903 - MER5B DNA MER1_type 0 178 14 302 274 51 45 chr9 1597708 1597865 -140673579 + MIR SINE MIR 80 237 -25 502 289 151 0 chr9 1598256 1598408 -140673036 + MER5A DNA MER1_type 9 183 -6 407 267 223 5 chr9 1600090 1600292 -140671152 - MER112 DNA MER1_type -7 253 8 1123 127 16 37 chr9 1600484 1600673 -140670771 + MER5A DNA MER1_type 5 189 0 237 248 23 39 chr9 1601533 1601662 -140669782 + (CA)n Simple_repeat Simple_repeat 1 127 0 304 118 29 0 chr9 1601695 1601763 -140669681 + (CA)n Simple_repeat Simple_repeat 1 70 0 2417 69 0 3 chr9 1601923 1602227 -140669217 + AluY SINE Alu 1 303 -8 1924 169 0 3 chr9 1602351 1602647 -140668797 + AluJb SINE Alu 3 297 -15 260 280 107 39 chr9 1602665 1603001 -140668443 + L1M4 LINE L1 3587 3945 -2201 4021 211 34 36 chr9 1603012 1604137 -140667307 - L1MB3 LINE L1 -3 6163 5036 1780 188 26 0 chr9 1604137 1604441 -140667003 - AluJb SINE Alu 0 312 1 4021 211 34 36 chr9 1604441 1605415 -140666029 - L1MB3 LINE L1 -1130 5036 4062 2795 239 71 2 chr9 1605402 1606274 -140665170 - L1MB3 LINE L1 -2319 3810 2879 * 2414 62 0 28 chr9 1606491 1606811 -140664633 - AluY SINE Alu 0 311 1 396 73 0 0 chr9 1606816 1606871 -140664573 + L1PA6 LINE L1 6094 6148 -6 1899 222 103 2 chr9 1606980 1607435 -140664009 + MLT1D LTR MaLR 1 501 -4 898 274 114 76 chr9 1607504 1608453 -140662991 - L1MB3 LINE L1 -4862 1257 335 2566 114 5 11 chr9 1608453 1608830 -140662614 - THE1C LTR MaLR 0 375 1 898 274 114 76 chr9 1608830 1609168 -140662276 - L1MB3 LINE L1 -5784 335 11 991 208 97 143 chr9 1609174 1609760 -140661684 - MLT1F1 LTR MaLR 0 567 17 1999 191 12 10 chr9 1609784 1610193 -140661251 - L1PA16 LINE L1 0 6166 5757 894 245 100 121 chr9 1610243 1611076 -140660368 + L1ME4a LINE L1 5307 6121 0 413 331 22 43 chr9 1611378 1611562 -140659882 - MIR SINE MIR -50 212 33 184 395 47 12 chr9 1611596 1611682 -140659762 - L2 LINE L2 -28 3244 3156 417 86 0 0 chr9 1612466 1612524 -140658920 + (TAA)n Simple_repeat Simple_repeat 3 60 0 200 257 57 14 chr9 1612640 1612710 -140658734 + MIR SINE MIR 58 130 -78 567 228 78 71 chr9 1612779 1613034 -140658410 - MIR SINE MIR -1 261 5 485 361 50 4 chr9 1613608 1613846 -140657598 + MIR SINE MIR 8 256 -6 239 279 15 0 chr9 1615956 1616024 -140655420 + MIR SINE MIR 178 246 -16 8312 198 31 17 chr9 1616393 1619264 -140652180 - L1PA16 LINE L1 -9 6157 3311 671 245 14 0 chr9 1620143 1620290 -140651154 - MIR SINE MIR -111 151 3 24 0 0 0 chr9 1620820 1620844 -140650600 + AT_rich Low_complexity Low_complexity 1 24 0 266 260 0 26 chr9 1620995 1621072 -140650372 + CT-rich Low_complexity Low_complexity 2 76 0 516 222 71 142 chr9 1623013 1623337 -140648107 + MLT1J2 LTR MaLR 150 450 0 27 0 0 0 chr9 1623468 1623495 -140647949 + AT_rich Low_complexity Low_complexity 1 27 0 255 300 0 0 chr9 1623566 1623636 -140647808 - L2 LINE L2 0 3313 3244 240 345 36 9 chr9 1623749 1623859 -140647585 - L2 LINE L2 -91 3222 3110 34 24 0 0 chr9 1624578 1624619 -140646825 + AT_rich Low_complexity Low_complexity 1 41 0 625 245 19 26 chr9 1625011 1625220 -140646224 - MIR SINE MIR 0 262 8 181 303 110 58 chr9 1626023 1626178 -140645266 + L3b LINE CR1 1225 1387 -196 321 260 20 82 chr9 1626271 1626417 -140645027 - MIR SINE MIR -56 206 70 279 0 0 0 chr9 1626728 1626759 -140644685 + (A)n Simple_repeat Simple_repeat 1 31 0 630 175 0 0 chr9 1626834 1626948 -140644496 - L1MB8 LINE L1 -2 6176 6063 307 331 97 36 chr9 1627323 1627737 -140643707 + L2 LINE L2 2267 2705 -609 3377 111 4 14 chr9 1627737 1628242 -140643202 + Charlie3 DNA MER1_type 1 500 -2210 404 119 0 0 chr9 1628236 1628295 -140643149 + Charlie3 DNA MER1_type 2242 2300 -410 * 3024 97 2 50 chr9 1628298 1628782 -140642662 + Charlie3 DNA MER1_type 2245 2705 -5 180 356 20 89 chr9 1628784 1628986 -140642458 + L2 LINE L2 2699 2886 -428 2505 61 0 0 chr9 1629061 1629372 -140642072 - AluY SINE Alu 0 311 1 261 290 0 0 chr9 1629600 1629669 -140641775 + L2 LINE L2 3196 3264 -8 1993 196 70 32 chr9 1629755 1630286 -140641158 + L1MB3 LINE L1 5625 6175 -8 2351 148 0 3 chr9 1630286 1630652 -140640792 + MLT1A1 LTR MaLR 1 365 0 348 359 27 29 chr9 1630662 1630831 -140640613 + MIR3 SINE MIR 20 191 -17 328 296 49 0 chr9 1631072 1631153 -140640291 - L2 LINE L2 -2 3270 3186 231 200 0 0 chr9 1632182 1632222 -140639222 - L2 LINE L2 -12 3301 3262 200 313 138 12 chr9 1632315 1632395 -140639049 - MIR SINE MIR -53 209 120 * 231 344 56 11 chr9 1632378 1632468 -140638976 + MIR SINE MIR 28 121 -87 1353 190 26 95 chr9 1632561 1632983 -140638461 - MSTD LTR MaLR 0 396 4 5602 237 84 27 chr9 1633000 1634626 -140636818 - MSTD-int LTR MaLR -15 1720 2 979 172 59 25 chr9 1634628 1634832 -140636612 - MSTD LTR MaLR 0 396 186 2298 125 0 0 chr9 1635185 1635497 -140635947 - AluSx SINE Alu 0 312 1 349 293 96 19 chr9 1636763 1636920 -140634524 - MIR3 SINE MIR 0 208 40 367 277 85 57 chr9 1637544 1637721 -140633723 + MIR SINE MIR 35 216 -46 932 303 92 10 chr9 1637723 1638135 -140633309 - LTR16A LTR ERVL -4 446 1 358 350 12 8 chr9 1638276 1638558 -140632886 - ERVL LTR ERVL -327 5327 5046 563 356 35 23 chr9 1638592 1639106 -140632338 - ERVL LTR ERVL -754 4900 4436 633 315 36 47 chr9 1639228 1639730 -140631714 - ERVL LTR ERVL -2020 3634 3137 738 317 75 13 chr9 1639766 1640072 -140631372 - ERVL LTR ERVL -1912 3084 2760 3779 290 51 11 chr9 1640073 1641379 -140630065 - HERV16 LTR ERVL -3480 1516 158 420 364 65 16 chr9 1642633 1642817 -140628627 + MIR3 SINE MIR 1 193 -15 345 345 39 97 chr9 1642837 1643251 -140628193 - L2 LINE L2 0 3272 2883 540 286 120 36 chr9 1643704 1644797 -140626647 - L1MDb LINE L1 -3660 2555 1398 315 278 7 48 chr9 1644809 1645069 -140626375 - L1MDb LINE L1 -5097 1108 857 305 339 36 9 chr9 1645727 1645839 -140625605 - L1MDb LINE L1 -5953 252 138 253 254 0 0 chr9 1647864 1647927 -140623517 + GA-rich Low_complexity Low_complexity 2 64 0 954 188 18 61 chr9 1648236 1648428 -140623016 + MER20 DNA MER1_type 1 183 -36 2067 212 125 64 chr9 1648428 1649205 -140622239 - LTR1B LTR ERV1 0 826 3 954 188 18 61 chr9 1649205 1649241 -140622203 + MER20 DNA MER1_type 183 219 0 2015 137 3 3 chr9 1649381 1649680 -140621764 - AluSx SINE Alu -11 301 3 21 36 0 0 chr9 1649812 1649840 -140621604 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr9 1649933 1649968 -140621476 + AT_rich Low_complexity Low_complexity 1 35 0 311 269 50 55 chr9 1650205 1650406 -140621038 - HAL1 LINE L1 -10 2497 2298 1266 298 109 10 chr9 1650418 1650931 -140620513 + Zaphod DNA AcHobo 44 607 -3424 2668 177 23 86 chr9 1650937 1651667 -140619777 - L1MC2 LINE L1 -2 6342 5659 642 254 83 99 chr9 1651665 1652525 -140618919 - L1ME LINE L1 -4968 1088 272 * 438 320 59 51 chr9 1652656 1653065 -140618379 - L1ME LINE L1 -5610 460 49 9598 224 46 29 chr9 1653117 1653629 -140617815 + L1MB2 LINE L1 1964 2466 -3941 12873 30 5 0 chr9 1653629 1655943 -140615501 + L1PA3 LINE L1 3833 6152 -3 9598 224 46 29 chr9 1655943 1659782 -140611662 + L1MB2 LINE L1 2466 6400 -7 1851 276 105 63 chr9 1659794 1659945 -140611499 - HAL1 LINE L1 -542 1965 1822 2512 74 3 0 chr9 1659945 1660254 -140611190 - AluSp SINE Alu -3 310 1 1851 276 105 63 chr9 1660254 1661884 -140609560 - HAL1 LINE L1 -685 1822 110 1034 184 23 122 chr9 1662493 1662836 -140608608 + MLT1A1 LTR MaLR 1 309 -56 196 29 0 57 chr9 1663793 1663828 -140607616 + (TTG)n Simple_repeat Simple_repeat 3 35 0 267 114 0 0 chr9 1664701 1664745 -140606699 + (CA)n Simple_repeat Simple_repeat 2 45 0 194 315 0 0 chr9 1665337 1665391 -140606053 - L2 LINE L2 -5 3308 3255 22 35 0 0 chr9 1665829 1665858 -140605586 + AT_rich Low_complexity Low_complexity 1 29 0 198 100 50 25 chr9 1666198 1666238 -140605206 + MIR SINE MIR 101 141 -67 2402 44 14 14 chr9 1666277 1666573 -140604871 + AluY SINE Alu 1 296 -15 777 193 0 40 chr9 1666651 1666827 -140604617 + MER3 DNA MER1_type 4 125 -84 248 148 19 56 chr9 1667532 1667586 -140603858 - MIR SINE MIR -79 183 132 242 253 53 13 chr9 1667813 1667888 -140603556 + L2 LINE L2 3194 3271 -1 5291 94 8 7 chr9 1667908 1668673 -140602771 + MER4E LTR ERV1 1 766 0 637 224 109 0 chr9 1669201 1669375 -140602069 + L1MC1 LINE L1 6141 6333 0 223 312 56 56 chr9 1669600 1669725 -140601719 + L2 LINE L2 3134 3258 -14 1240 180 25 109 chr9 1669827 1670221 -140601223 + MLT1A1 LTR MaLR 1 361 -4 692 269 55 43 chr9 1673911 1674167 -140597277 + MIR SINE MIR 4 262 0 23 54 0 0 chr9 1674516 1674553 -140596891 + AT_rich Low_complexity Low_complexity 1 37 0 243 220 0 34 chr9 1675382 1675441 -140596003 + (CATA)n Simple_repeat Simple_repeat 3 59 0 285 183 21 0 chr9 1675571 1675639 -140595805 - MER5A DNA MER1_type -116 73 4 597 196 0 0 chr9 1675663 1675770 -140595674 - AluSx SINE Alu -20 292 186 846 86 0 0 chr9 1675770 1675875 -140595569 - AluSx SINE Alu -207 105 1 703 351 59 52 chr9 1675930 1676703 -140594741 + L2 LINE L2 2481 3271 -1 1796 111 4 8 chr9 1676762 1677014 -140594430 + AluSq SINE Alu 12 262 -51 882 107 8 0 chr9 1677003 1677134 -140594310 + AluSp/q SINE Alu 179 310 -3 355 314 20 10 chr9 1677599 1677701 -140593743 + LTR67 LTR ERVL 115 217 -340 1238 251 5 64 chr9 1677732 1678122 -140593322 - L2 LINE L2 0 3313 2947 436 210 87 118 chr9 1678247 1678442 -140593002 + LTR67 LTR ERVL 361 549 -8 230 267 68 93 chr9 1678854 1678882 -140592562 + MER104 DNA Tc2 2 29 -1869 1853 145 0 30 chr9 1678882 1679202 -140592242 - AluSx SINE Alu 0 312 2 230 267 68 93 chr9 1679202 1679334 -140592110 + MER104 DNA Tc2 29 158 -22 3276 169 58 2 chr9 1679878 1680462 -140590982 - MER73 LTR ERVL 0 644 28 385 291 78 47 chr9 1680989 1681247 -140590197 - MLT1H LTR MaLR -204 345 80 207 321 43 62 chr9 1681415 1681577 -140589867 - MIR SINE MIR -6 256 98 216 0 0 0 chr9 1682409 1682433 -140589011 + (TA)n Simple_repeat Simple_repeat 2 25 0 241 224 20 0 chr9 1683099 1683148 -140588296 + GA-rich Low_complexity Low_complexity 4 53 0 838 246 212 15 chr9 1683753 1684078 -140587366 - MLT1J2 LTR MaLR -18 432 44 331 273 91 10 chr9 1684105 1684204 -140587240 - MIR SINE MIR -65 143 37 308 314 86 14 chr9 1685555 1685695 -140585749 + L2 LINE L2 3121 3270 -2 1745 226 12 0 chr9 1685788 1686125 -140585319 - MER58B DNA MER1_type 0 341 1 27 29 0 0 chr9 1686629 1686663 -140584781 + AT_rich Low_complexity Low_complexity 1 34 0 2075 113 44 10 chr9 1686754 1687047 -140584397 + AluSx SINE Alu 1 303 -9 614 328 70 29 chr9 1687233 1687474 -140583970 + MIR SINE MIR 12 262 0 259 357 134 0 chr9 1688385 1688497 -140582947 + MIR3 SINE MIR 55 181 -27 326 320 107 46 chr9 1688879 1689272 -140582172 + L2 LINE L2 2620 3034 -238 417 349 178 25 chr9 1689644 1689959 -140581485 - L2 LINE L2 -371 2943 2581 * 857 111 16 148 chr9 1689949 1690138 -140581306 - MER5A DNA MER1_type -25 164 1 238 370 0 0 chr9 1690138 1690228 -140581216 - L2 LINE L2 -724 2590 2501 2208 176 57 20 chr9 1690883 1691321 -140580123 + MLT1C LTR MaLR 11 464 -3 204 295 143 27 chr9 1691525 1691637 -140579807 + L2 LINE L2 3146 3270 -2 1573 202 76 9 chr9 1692328 1692670 -140578774 - MLT1A1 LTR MaLR 0 365 1 278 282 68 10 chr9 1692670 1692773 -140578671 + MER94 DNA DNA 26 134 0 2376 65 0 10 chr9 1692988 1693282 -140578162 - AluY SINE Alu -20 291 1 491 318 77 14 chr9 1693504 1693724 -140577720 + MIR SINE MIR 29 262 0 2169 106 0 0 chr9 1694843 1695126 -140576318 + AluSg SINE Alu 6 288 -22 595 281 54 0 chr9 1696146 1696331 -140575113 - LTR16A LTR ERVL -235 215 21 397 257 67 0 chr9 1696330 1696435 -140575009 + MER94 DNA DNA 22 133 -1 * 232 312 52 0 chr9 1697170 1697247 -140574197 + L2 LINE L2 3231 3311 -2 1600 328 17 17 chr9 1698408 1698990 -140572454 - HERV16 LTR ERVL -2764 2232 1651 1051 235 101 35 chr9 1699025 1699391 -140572053 - LTR16A LTR ERVL -1 449 60 388 257 67 0 chr9 1699422 1699527 -140571917 + MER94 DNA DNA 22 133 -1 2001 139 3 19 chr9 1700321 1700637 -140570807 + AluJb SINE Alu 1 311 -1 281 191 96 53 chr9 1701207 1701301 -140570143 + L2 LINE L2 3211 3308 -5 470 252 22 0 chr9 1701807 1701942 -140569502 - L1M4 LINE L1 -1127 5019 4882 34 0 0 0 chr9 1702189 1702223 -140569221 + AT_rich Low_complexity Low_complexity 1 34 0 315 277 62 45 chr9 1702415 1702511 -140568933 + L1ME3 LINE L1 5747 5849 -313 2274 119 0 0 chr9 1702511 1702823 -140568621 - AluSx SINE Alu 0 312 1 315 277 62 45 chr9 1702823 1702903 -140568541 + L1ME3 LINE L1 5849 5926 -236 646 247 88 36 chr9 1703098 1703292 -140568152 - MLT1H LTR MaLR 0 549 364 646 233 124 71 chr9 1703313 1703579 -140567865 - MLT1H LTR MaLR -258 291 12 25 51 0 0 chr9 1703698 1703737 -140567707 + AT_rich Low_complexity Low_complexity 1 39 0 393 346 92 19 chr9 1707241 1707304 -140564140 - L3 LINE CR1 -31 1546 1489 2192 138 39 30 chr9 1707304 1707665 -140563779 + THE1B LTR MaLR 1 364 0 393 346 92 19 chr9 1707665 1707861 -140563583 - L3 LINE CR1 -88 1489 1268 354 228 184 56 chr9 1707888 1708208 -140563236 - L1ME4a LINE L1 -31 6090 5730 219 306 40 65 chr9 1708229 1708353 -140563091 - L2 LINE L2 0 3313 3193 279 278 38 45 chr9 1708511 1708644 -140562800 - L1ME4a LINE L1 -590 5531 5400 811 241 82 5 chr9 1709602 1709822 -140561622 - MIR SINE MIR 0 262 26 325 300 100 9 chr9 1709890 1710000 -140561444 - MIR3 SINE MIR -54 154 35 29 28 0 0 chr9 1710152 1710188 -140561256 + AT_rich Low_complexity Low_complexity 1 36 0 44120 44 6 3 chr9 1710925 1717054 -140554390 + L1PA3 LINE L1 8 6153 -2 222 118 0 0 chr9 1717147 1717181 -140554263 + (TC)n Simple_repeat Simple_repeat 2 35 0 902 358 47 12 chr9 1717522 1718094 -140553350 - L2 LINE L2 -1102 2212 1621 684 24 0 0 chr9 1718133 1718215 -140553229 + (TC)n Simple_repeat Simple_repeat 1 82 0 36850 54 9 6 chr9 1718681 1724192 -140547252 + L1PA4 LINE L1 628 6155 0 2786 16 0 0 chr9 1724195 1724500 -140546944 + AluYa5 SINE Alu 1 305 -6 29 0 0 0 chr9 1724670 1724699 -140546745 + AT_rich Low_complexity Low_complexity 1 29 0 3105 303 66 47 chr9 1725163 1726815 -140544629 + ERVL LTR ERVL 1012 2695 -3069 453 258 0 0 chr9 1726839 1726932 -140544512 + MER5A DNA MER1_type 9 101 -88 892 290 128 28 chr9 1726963 1727365 -140544079 + ERVL LTR ERVL 2675 3104 -2381 1253 127 0 0 chr9 1727482 1727655 -140543789 + AluJb SINE Alu 140 312 0 281 191 96 53 chr9 1728225 1728319 -140543125 + L2 LINE L2 3211 3308 -5 470 252 22 0 chr9 1728825 1728960 -140542484 - L1M4 LINE L1 -1127 5019 4882 34 0 0 0 chr9 1729207 1729241 -140542203 + AT_rich Low_complexity Low_complexity 1 34 0 294 212 63 0 chr9 1729433 1729504 -140541940 + L1ME LINE L1 5747 5813 -349 2818 19 0 0 chr9 1729529 1729840 -140541604 - AluYa5 SINE Alu 0 311 1 35584 41 3 2 chr9 1729843 1734913 -140536531 - L1PA4 LINE L1 0 6155 1081 622 178 0 0 chr9 1734881 1734982 -140536462 - L1P3 LINE L1 -6351 110 10 * 44 70 0 0 chr9 1735128 1735214 -140536230 + AT_rich Low_complexity Low_complexity 1 86 0 21 0 0 0 chr9 1735964 1735985 -140535459 + AT_rich Low_complexity Low_complexity 1 21 0 2642 287 119 14 chr9 1736240 1737485 -140533959 + L2 LINE L2 1378 2752 -562 232 273 130 63 chr9 1737485 1737723 -140533721 - LTR16A1 LTR ERVL -12 445 192 701 261 187 28 chr9 1737748 1738112 -140533332 + L2 LINE L2 2892 3313 0 1510 184 46 158 chr9 1739349 1739875 -140531569 - MLT1C LTR MaLR 0 467 1 512 321 29 24 chr9 1740592 1740838 -140530606 + MIR SINE MIR 2 248 -14 261 216 0 0 chr9 1741897 1741948 -140529496 - MADE1 DNA Mariner 0 80 30 2575 146 56 15 chr9 1742029 1742440 -140529004 + MSTA LTR MaLR 1 428 0 300 241 128 73 chr9 1742887 1743160 -140528284 + LTR16C LTR ERVL 163 483 -8 223 283 64 121 chr9 1743276 1743696 -140527748 + L2 LINE L2 2869 3264 -8 2089 110 40 3 chr9 1745009 1745308 -140526136 - AluSx SINE Alu -2 310 1 2459 161 32 19 chr9 1745324 1745795 -140525649 - L1MB7 LINE L1 -9 6175 5699 266 254 0 0 chr9 1748574 1748633 -140522811 + MIR SINE MIR 93 151 -111 313 282 10 58 chr9 1749558 1749661 -140521783 + MIR3 SINE MIR 90 187 -21 322 253 69 11 chr9 1750406 1750493 -140520951 - MIR SINE MIR -142 120 29 1139 226 11 90 chr9 1751563 1751940 -140519504 + MLT2B1 LTR ERVL 1 347 -173 1973 209 45 5 chr9 1751949 1752475 -140518969 + LTR69 LTR ERVL 1 588 0 659 176 0 135 chr9 1752475 1752668 -140518776 + MLT2B1 LTR ERVL 352 518 -2 579 245 108 44 chr9 1752805 1753009 -140518435 - MLT1C LTR MaLR 0 467 251 3700 198 32 26 chr9 1753014 1753816 -140517628 + L1MC3 LINE L1 5863 6669 -1116 743 198 32 0 chr9 1753973 1754099 -140517345 + FLAM_A SINE Alu 1 130 -3 536 165 157 58 chr9 1754524 1754645 -140516799 + FLAM_C SINE Alu 1 133 0 517 186 230 0 chr9 1755088 1755201 -140516243 - FLAM_C SINE Alu -2 141 3 24 53 0 0 chr9 1755846 1755884 -140515560 + AT_rich Low_complexity Low_complexity 1 38 0 851 192 47 5 chr9 1756190 1756383 -140515061 - L1MC4 LINE L1 -680 7362 7162 5365 133 23 52 chr9 1756533 1757397 -140514047 - L1MA9 LINE L1 0 6312 5481 2169 115 7 0 chr9 1757397 1757702 -140513742 - AluSx SINE Alu -5 307 1 5365 133 23 52 chr9 1757702 1757853 -140513591 - L1MA9 LINE L1 -831 5481 5327 258 32 0 0 chr9 1758811 1758842 -140512602 + (TAAAA)n Simple_repeat Simple_repeat 1 31 0 611 219 15 7 chr9 1759593 1759730 -140511714 - MSTD LTR MaLR -258 138 1 397 332 57 17 chr9 1760339 1760640 -140510804 + HAL1 LINE L1 110 422 -2085 403 302 132 16 chr9 1761277 1761466 -140509978 - MIR SINE MIR -39 223 13 243 0 0 0 chr9 1761550 1761577 -140509867 + (TAA)n Simple_repeat Simple_repeat 2 28 0 2076 112 0 10 chr9 1762864 1763178 -140508266 + AluY SINE Alu 1 311 0 7722 41 7 1 chr9 1764302 1765404 -140506040 + L1PA4 LINE L1 5037 6144 -11 222 118 0 0 chr9 1765508 1765542 -140505902 + (TC)n Simple_repeat Simple_repeat 2 35 0 871 356 47 14 chr9 1765884 1766457 -140504987 - L2 LINE L2 -1102 2212 1621 399 21 0 0 chr9 1766496 1766544 -140504900 + (TC)n Simple_repeat Simple_repeat 1 48 0 2007 206 104 50 chr9 1766832 1767406 -140504038 - MLT1E3 LTR MaLR 0 624 20 201 94 0 0 chr9 1767521 1767553 -140503891 + (TTGG)n Simple_repeat Simple_repeat 4 35 0 2317 98 0 0 chr9 1767557 1767853 -140503591 - AluY SINE Alu -15 296 1 854 78 0 0 chr9 1768092 1768194 -140503250 + L1PA8 LINE L1 6057 6158 -14 916 266 72 26 chr9 1768235 1768540 -140502904 + L1M4b LINE L1 1062 1380 -5479 502 264 119 6 chr9 1768838 1769191 -140502253 + MLT1H LTR MaLR 138 549 0 302 291 30 79 chr9 1769991 1770156 -140501288 + MIR SINE MIR 12 168 -94 417 259 118 30 chr9 1770255 1770390 -140501054 + MIR SINE MIR 14 160 -102 2090 56 0 0 chr9 1770399 1770650 -140500794 - L1PA2 LINE L1 -403 5752 5502 3836 21 0 0 chr9 1770650 1771068 -140500376 + L1PA2 LINE L1 5737 6155 0 2174 186 74 9 chr9 1771436 1771871 -140499573 - L1MB2 LINE L1 -23 6148 5686 359 292 62 9 chr9 1772508 1772621 -140498823 + L2 LINE L2 3179 3297 -16 1583 176 61 3 chr9 1773368 1773663 -140497781 + AluJb SINE Alu 1 312 0 3514 77 2 0 chr9 1773813 1774268 -140497176 - L1PA7 LINE L1 -785 5361 4903 6600 62 6 0 chr9 1774268 1775054 -140496390 + L1PA7 LINE L1 5363 6154 0 229 282 14 84 chr9 1775064 1775135 -140496309 - MIR SINE MIR -109 99 34 184 0 97 0 chr9 1777008 1777039 -140494405 + (TAAA)n Simple_repeat Simple_repeat 1 34 0 2373 221 46 15 chr9 1777390 1777916 -140493528 - MLT1F LTR MaLR 0 542 1 202 234 9 140 chr9 1778792 1778899 -140492545 - MER5B DNA MER1_type 0 178 86 265 275 63 21 chr9 1779965 1780107 -140491337 - ERVL LTR ERVL -8 5756 5609 27 49 0 0 chr9 1780265 1780306 -140491138 + AT_rich Low_complexity Low_complexity 1 41 0 1642 209 8 48 chr9 1780441 1780819 -140490625 - MLT1A1 LTR MaLR 0 365 3 7132 205 23 64 chr9 1780832 1782178 -140489266 - MLT1A1-int LTR MaLR -6 1729 425 356 43 0 0 chr9 1782178 1782225 -140489219 + MADE1 DNA Mariner 30 76 -4 7132 205 23 64 chr9 1782225 1782634 -140488810 - MLT1A1-int LTR MaLR -1310 425 1 1475 248 19 14 chr9 1782634 1782997 -140488447 - MLT1A1 LTR MaLR 0 365 1 4864 306 71 69 chr9 1783013 1785446 -140485998 - ERVL LTR ERVL -546 5218 2677 457 258 0 0 chr9 1785446 1785539 -140485905 - MER5A DNA MER1_type -88 101 9 4864 306 71 69 chr9 1785539 1787408 -140484036 - ERVL LTR ERVL -3087 2677 814 29 0 0 0 chr9 1787679 1787708 -140483736 + AT_rich Low_complexity Low_complexity 1 29 0 2749 16 0 0 chr9 1787878 1788183 -140483261 - AluYa5 SINE Alu -6 305 1 33215 41 3 2 chr9 1788186 1793256 -140478188 - L1PA4 LINE L1 0 6155 1081 578 178 0 0 chr9 1793224 1793325 -140478119 - L1P3 LINE L1 -6351 110 10 * 44 70 0 0 chr9 1793471 1793557 -140477887 + AT_rich Low_complexity Low_complexity 1 86 0 21 0 0 0 chr9 1794307 1794328 -140477116 + AT_rich Low_complexity Low_complexity 1 21 0 2661 286 120 15 chr9 1794583 1795828 -140475616 + L2 LINE L2 1378 2752 -562 698 270 177 32 chr9 1796048 1796455 -140474989 + L2 LINE L2 2848 3313 0 1307 184 46 158 chr9 1797692 1798218 -140473226 - MLT1C LTR MaLR 0 467 1 518 321 29 24 chr9 1798935 1799181 -140472263 + MIR SINE MIR 2 248 -14 236 178 0 0 chr9 1800246 1800291 -140471153 - MADE1 DNA Mariner -6 74 30 2385 146 56 15 chr9 1800372 1800783 -140470661 + MSTA LTR MaLR 1 428 0 231 236 131 75 chr9 1801230 1801496 -140469948 + LTR16C LTR ERVL 163 476 -15 230 309 52 109 chr9 1801619 1802039 -140469405 + L2 LINE L2 2869 3264 -8 2086 110 40 3 chr9 1803352 1803651 -140467793 - AluSx SINE Alu -2 310 1 2235 161 32 19 chr9 1803667 1804138 -140467306 - L1MB7 LINE L1 -9 6175 5699 270 254 0 0 chr9 1806917 1806976 -140464468 + MIR SINE MIR 93 151 -111 309 282 10 58 chr9 1807901 1808004 -140463440 + MIR3 SINE MIR 90 187 -21 321 253 69 11 chr9 1808749 1808836 -140462608 - MIR SINE MIR -142 120 29 1009 225 11 91 chr9 1809906 1810280 -140461164 + MLT2B1 LTR ERVL 1 344 -176 1811 209 45 5 chr9 1810292 1810818 -140460626 + LTR69 LTR ERVL 1 588 0 584 176 0 135 chr9 1810818 1811011 -140460433 + MLT2B1 LTR ERVL 352 518 -2 500 250 108 44 chr9 1811148 1811352 -140460092 - MLT1C LTR MaLR 0 467 251 5996 176 94 75 chr9 1811357 1812581 -140458863 + L1MC3 LINE L1 5863 7219 -566 230 264 33 33 chr9 1812581 1812672 -140458772 + MLT1F1 LTR MaLR 35 125 -442 5996 176 94 75 chr9 1812672 1813053 -140458391 + L1MC3 LINE L1 7219 7591 -194 862 174 60 0 chr9 1813056 1813240 -140458204 + L1MC2 LINE L1 6137 6331 -13 604 248 8 0 chr9 1814034 1814159 -140457285 + FLAM_A SINE Alu 1 126 -16 24 0 0 0 chr9 1814177 1814201 -140457243 + AT_rich Low_complexity Low_complexity 1 24 0 321 169 17 0 chr9 1814448 1814507 -140456937 - L1MB7 LINE L1 -445 5721 5662 669 70 85 4 chr9 1814507 1814779 -140456665 + (TA)n Simple_repeat Simple_repeat 1 293 0 206 108 92 15 chr9 1814780 1814845 -140456599 + (TTATA)n Simple_repeat Simple_repeat 2 71 0 627 96 39 34 chr9 1814849 1815027 -140456417 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 188 35 35 0 chr9 1815047 1815076 -140456368 + (TTATA)n Simple_repeat Simple_repeat 5 34 0 186 98 59 0 chr9 1815185 1815236 -140456208 + (TA)n Simple_repeat Simple_repeat 1 54 0 63 14 0 0 chr9 1815236 1815306 -140456138 + AT_rich Low_complexity Low_complexity 1 70 0 538 96 45 39 chr9 1815306 1815484 -140455960 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 352 184 42 24 chr9 1815484 1815652 -140455792 + (TTATA)n Simple_repeat Simple_repeat 2 172 0 5599 244 51 20 chr9 1815652 1815700 -140455744 - L1P3 LINE L1 -470 5702 5657 7290 36 0 0 chr9 1815700 1816661 -140454783 - L1PA5 LINE L1 -15 6139 5172 5599 244 51 20 chr9 1816661 1818959 -140452485 - L1P3 LINE L1 -515 5657 3269 2041 146 0 0 chr9 1819159 1819446 -140451998 + AluSx SINE Alu 1 287 -25 494 154 22 7 chr9 1819446 1819582 -140451862 + (TA)n Simple_repeat Simple_repeat 1 138 0 2739 3 0 3 chr9 1819638 1819940 -140451504 + AluYa5 SINE Alu 1 301 -10 2229 246 14 26 chr9 1820416 1820985 -140450459 - MLT1F1 LTR MaLR -2 565 4 1327 176 12 8 chr9 1821062 1821318 -140450126 - L1 LINE L1 -2316 3830 3574 1818 143 0 3 chr9 1821318 1821605 -140449839 + L1PA15 LINE L1 5876 6161 -4 647 317 45 8 chr9 1822165 1822408 -140449036 + MIR SINE MIR 8 259 -3 35 16 0 49 chr9 1823007 1823068 -140448376 + AT_rich Low_complexity Low_complexity 1 58 0 199 430 52 10 chr9 1823243 1823436 -140448008 - L2 LINE L2 -215 3057 2857 312 343 60 69 chr9 1824566 1824916 -140446528 + HAL1 LINE L1 1 347 -2160 588 271 43 31 chr9 1825202 1825553 -140445891 + HAL1 LINE L1 812 1166 -1341 300 280 8 64 chr9 1825564 1825689 -140445755 + HAL1 LINE L1 1227 1344 -1163 2333 88 0 35 chr9 1827418 1827737 -140443707 - AluSg SINE Alu -2 308 1 216 298 0 0 chr9 1828544 1828601 -140442843 + GA-rich Low_complexity Low_complexity 1 57 0 1957 157 15 3 chr9 1829084 1829422 -140442022 - MER2 DNA MER2_type 0 344 3 318 268 0 57 chr9 1829568 1829691 -140441753 - L3 LINE CR1 -300 1277 1162 503 246 56 56 chr9 1829708 1829850 -140441594 - MER5A DNA MER1_type -21 168 27 540 317 136 40 chr9 1829856 1830386 -140441058 - L3 LINE CR1 -402 1175 595 385 95 0 119 chr9 1830405 1830489 -140440955 - MLT1D LTR MaLR -2 503 430 8551 97 7 8 chr9 1830495 1832444 -140439000 - L1PA7 LINE L1 0 6154 4188 7640 92 12 4 chr9 1832444 1833527 -140437917 - L1PA7 LINE L1 -3413 2733 1642 1424 207 153 26 chr9 1833531 1833918 -140437526 - MLT1D LTR MaLR -69 436 1 302 343 50 34 chr9 1833968 1834159 -140437285 - MIR SINE MIR -50 212 20 486 315 144 5 chr9 1834159 1834381 -140437063 - L3 LINE CR1 -1029 548 296 266 294 102 37 chr9 1835086 1835273 -140436171 + L2 LINE L2 2069 2267 -1047 982 174 35 6 chr9 1835585 1835757 -140435687 - MER5B DNA MER1_type 0 178 2 565 317 66 21 chr9 1836168 1836411 -140435033 + MIR SINE MIR 6 259 -3 184 294 29 29 chr9 1836505 1836573 -140434871 + L2 LINE L2 3244 3311 -2 219 139 0 0 chr9 1837318 1837344 -140434100 + (CA)n Simple_repeat Simple_repeat 2 30 -14 1514 180 115 49 chr9 1837344 1837710 -140433734 + MLT1B LTR MaLR 1 390 0 219 139 0 0 chr9 1837710 1837726 -140433718 + (CA)n Simple_repeat Simple_repeat 29 44 0 2164 111 7 0 chr9 1837943 1838231 -140433213 + AluSx SINE Alu 1 290 -22 28 29 0 0 chr9 1838231 1838266 -140433178 + AT_rich Low_complexity Low_complexity 1 35 0 480 302 135 14 chr9 1838549 1838771 -140432673 - MIR SINE MIR -3 259 11 5011 158 66 33 chr9 1839166 1839321 -140432123 + L1MC3 LINE L1 6709 6857 -928 225 0 0 0 chr9 1839321 1839346 -140432098 + (CA)n Simple_repeat Simple_repeat 2 26 0 5011 158 66 33 chr9 1839346 1840232 -140431212 + L1MC3 LINE L1 6857 7785 0 872 296 51 12 chr9 1840737 1841161 -140430283 - LTR16B LTR ERVL 0 464 1 293 109 0 0 chr9 1841829 1841875 -140429569 + MADE1 DNA Mariner 1 46 -34 268 179 0 71 chr9 1844268 1844324 -140427120 + L3 LINE CR1 1524 1575 -2 2156 117 0 0 chr9 1844533 1844816 -140426628 + AluSx SINE Alu 1 283 -29 1031 294 40 62 chr9 1844955 1845377 -140426067 - MER115 DNA AcHobo -271 422 10 268 380 23 8 chr9 1845954 1846083 -140425361 - MIR SINE MIR -62 146 16 253 253 11 46 chr9 1846160 1846247 -140425197 + L2 LINE L2 3229 3312 -1 256 247 101 0 chr9 1846935 1847024 -140424420 - MER113 DNA MER1_type? -420 101 4 395 277 107 0 chr9 1847028 1847140 -140424304 - MIR3 SINE MIR -49 159 36 267 306 0 0 chr9 1847405 1847497 -140423947 - MIR SINE MIR -62 146 66 321 251 156 52 chr9 1848241 1848296 -140423148 - MIR SINE MIR -18 244 196 1774 171 72 93 chr9 1848296 1848771 -140422673 - MLT1C LTR MaLR 0 467 3 321 251 156 52 chr9 1848771 1848926 -140422518 - MIR SINE MIR -66 196 12 798 253 30 47 chr9 1849052 1849147 -140422297 - MIR SINE MIR -8 254 159 1929 113 49 7 chr9 1849147 1849431 -140422013 - AluSx SINE Alu -16 296 1 798 253 30 47 chr9 1849431 1849568 -140421876 - MIR SINE MIR -103 159 26 576 232 99 72 chr9 1850863 1851072 -140420372 - MER102b DNA MER1_type -1093 335 116 468 0 0 0 chr9 1851072 1851124 -140420320 + (TG)n Simple_repeat Simple_repeat 2 53 0 576 232 99 72 chr9 1851124 1851177 -140420267 - MER102b DNA MER1_type -1312 116 66 356 198 214 57 chr9 1851191 1851383 -140420061 - MLT1H LTR MaLR -7 548 327 427 164 0 0 chr9 1851757 1851830 -140419614 + AluS SINE Alu 2 74 -238 550 275 38 30 chr9 1851848 1852124 -140419320 - MLT1H LTR MaLR -292 257 10 794 269 34 8 chr9 1852193 1852427 -140419017 + MIR SINE MIR 7 246 -16 1834 151 12 107 chr9 1852439 1852870 -140418574 - MLT1B LTR MaLR 0 390 1 315 280 27 13 chr9 1852956 1853106 -140418338 + (TA)n Simple_repeat Simple_repeat 2 153 0 1811 203 29 29 chr9 1853927 1854301 -140417143 + MLT1A2 LTR MaLR 1 374 0 668 280 114 4 chr9 1854626 1854862 -140416582 + MIR SINE MIR 1 262 0 353 316 186 0 chr9 1856601 1856816 -140414628 + MLT1L LTR MaLR 90 344 -271 2260 122 21 24 chr9 1857174 1857510 -140413934 - MER1B DNA MER1_type 0 337 3 4186 69 19 4 chr9 1857798 1858321 -140413123 + L1PA7 LINE L1 5624 6154 0 507 191 9 45 chr9 1858604 1858714 -140412730 + MER97b DNA MER1_type? 74 179 -874 2245 110 0 7 chr9 1859143 1859444 -140412000 + AluSx SINE Alu 1 299 -13 643 286 44 15 chr9 1859446 1859649 -140411795 + MLT1L LTR MaLR 394 602 -13 202 235 12 141 chr9 1860094 1860179 -140411265 - L2 LINE L2 -3 3269 3196 23 0 0 0 chr9 1860959 1860982 -140410462 + AT_rich Low_complexity Low_complexity 1 23 0 614 147 7 73 chr9 1861051 1861187 -140410257 - L1MB1 LINE L1 -26 6163 6037 276 289 133 16 chr9 1861464 1861592 -140409852 - L3 LINE CR1 -1 1576 1434 2535 175 17 7 chr9 1861681 1862103 -140409341 + MSTB LTR MaLR 1 426 0 2306 83 0 51 chr9 1862118 1862430 -140409014 + AluSc SINE Alu 1 296 -13 8357 189 41 22 chr9 1862431 1864047 -140407397 + MSTB-int LTR MaLR 6 1651 0 2228 188 57 5 chr9 1864047 1864452 -140406992 + MSTB LTR MaLR 1 426 0 798 69 0 0 chr9 1864487 1864589 -140406855 - L1PB1 LINE L1 0 6151 6050 257 274 0 14 chr9 1864595 1864668 -140406776 - L3 LINE CR1 -292 1285 1214 293 269 146 23 chr9 1865285 1865415 -140406029 - L3 LINE CR1 -426 1151 1006 900 316 39 31 chr9 1866197 1866612 -140404832 - LTR16C LTR ERVL -1 490 73 724 284 91 12 chr9 1867100 1867343 -140404101 + MIR SINE MIR 1 262 0 6351 216 52 28 chr9 1867793 1869033 -140402411 + L1MA5 LINE L1 13 1222 -5986 2091 58 0 0 chr9 1869033 1869276 -140402168 - L1PA5 LINE L1 0 6154 5912 6351 216 52 28 chr9 1869276 1869421 -140402023 + L1MA5 LINE L1 1222 1362 -5846 276 30 0 0 chr9 1869421 1869454 -140401990 + (CA)n Simple_repeat Simple_repeat 2 34 0 6351 216 52 28 chr9 1869454 1869821 -140401623 + L1MA5 LINE L1 1362 1719 -5489 2240 120 0 3 chr9 1869821 1870130 -140401314 + AluSx SINE Alu 1 308 -4 6351 216 52 28 chr9 1870130 1871261 -140400183 + L1MA5 LINE L1 1719 3845 -3363 * 25807 74 12 2 chr9 1871253 1875494 -140395950 + L1PA6 LINE L1 1872 6154 0 234 308 77 19 chr9 1875522 1875678 -140395766 + L1ME4a LINE L1 5956 6120 -1 2418 190 57 17 chr9 1875743 1876217 -140395227 + MER68 LTR ERV1 1 493 -69 6997 176 54 25 chr9 1876217 1879594 -140391850 + L1MA5 LINE L1 3822 7357 -5 1955 143 0 22 chr9 1879618 1879932 -140391512 + AluSx SINE Alu 1 307 -5 211 289 19 39 chr9 1880907 1881011 -140390433 + MIR3 SINE MIR 99 200 -8 237 255 170 21 chr9 1881111 1881205 -140390239 - L2 LINE L2 -5 3267 3160 1075 216 51 51 chr9 1883369 1883613 -140387831 + L1ME1 LINE L1 5753 5999 -167 507 261 18 0 chr9 1883613 1883724 -140387720 - MER81 DNA DNA 0 114 2 1075 216 51 51 chr9 1883724 1883775 -140387669 + L1ME1 LINE L1 5998 6048 -118 303 121 0 52 chr9 1883791 1883849 -140387595 + L1MB7 LINE L1 6113 6167 -17 256 280 32 21 chr9 1883880 1883973 -140387471 + L2 LINE L2 3139 3232 -40 214 268 85 78 chr9 1884173 1884326 -140387118 - MER5A DNA MER1_type 0 189 36 * 269 379 7 7 chr9 1884192 1884337 -140387107 + MER5B DNA MER1_type 21 165 -13 280 193 72 60 chr9 1884712 1884795 -140386649 + MIR3 SINE MIR 118 201 -7 2054 129 0 10 chr9 1885190 1885493 -140385951 + AluSx SINE Alu 1 300 -12 2157 149 10 72 chr9 1885676 1886092 -140385352 - MLT1B LTR MaLR 0 390 1 226 258 161 32 chr9 1887243 1887367 -140384077 + MIR SINE MIR 122 261 -1 457 268 67 31 chr9 1887803 1887997 -140383447 - MIR SINE MIR -49 213 13 2288 107 0 3 chr9 1888614 1888914 -140382530 - AluSp SINE Alu -14 299 1 607 124 0 11 chr9 1888914 1889003 -140382441 - AluSc SINE Alu -5 304 217 293 370 62 7 chr9 1890293 1890439 -140381005 + L2 LINE L2 3117 3270 -2 717 309 34 27 chr9 1890576 1890838 -140380606 - LTR16A LTR ERVL -170 280 17 2181 271 79 49 chr9 1891004 1892097 -140379347 - L2 LINE L2 -4 3309 2175 212 204 0 37 chr9 1892334 1892388 -140379056 - L2 LINE L2 -1143 2171 2120 457 252 109 41 chr9 1892628 1892952 -140378492 + MLT1I LTR MaLR 53 542 0 291 395 7 7 chr9 1892975 1893122 -140378322 + MIR SINE MIR 111 257 -5 234 337 50 39 chr9 1894804 1895086 -140376358 - LTR16C LTR ERVL -3 488 204 2221 171 25 3 chr9 1895111 1895468 -140375976 + MLT1A1 LTR MaLR 1 365 0 21 57 0 0 chr9 1895897 1895932 -140375512 + AT_rich Low_complexity Low_complexity 1 35 0 228 189 57 19 chr9 1895990 1896096 -140375348 + (TA)n Simple_repeat Simple_repeat 1 110 0 204 188 0 0 chr9 1896186 1896218 -140375226 - L2 LINE L2 -71 3242 3211 314 248 165 34 chr9 1896237 1896443 -140375001 - MARNA DNA Mariner -149 437 205 306 293 40 0 chr9 1896979 1897054 -140374390 - MIR SINE MIR -61 147 70 236 160 0 40 chr9 1897506 1897556 -140373888 - L2 LINE L2 -8 3305 3258 257 325 26 0 chr9 1897563 1897677 -140373767 - L1ME LINE L1 -254 5867 5751 186 389 11 0 chr9 1897892 1897982 -140373462 - L2 LINE L2 -2 3270 3180 2434 192 56 29 chr9 1898153 1898675 -140372769 - MLT1F LTR MaLR 0 542 7 269 274 116 0 chr9 1899595 1899690 -140371754 + MLT1K LTR MaLR 373 478 -110 1880 156 158 24 chr9 1899899 1900309 -140371135 + MLT1C LTR MaLR 3 467 0 195 69 0 0 chr9 1900432 1900461 -140370983 + (CA)n Simple_repeat Simple_repeat 2 30 0 328 225 48 33 chr9 1900483 1900658 -140370786 - L1ME3A LINE L1 -231 5939 5764 588 276 133 56 chr9 1901337 1901728 -140369716 + MLT1L LTR MaLR 195 615 0 195 304 0 0 chr9 1901858 1901904 -140369540 - MIR SINE MIR -69 139 94 180 111 0 0 chr9 1902296 1902323 -140369121 + (T)n Simple_repeat Simple_repeat 1 27 0 180 279 58 35 chr9 1904208 1904294 -140367150 + MIR3 SINE MIR 111 198 -10 2131 128 0 19 chr9 1905390 1905703 -140365741 - AluSg SINE Alu -3 307 1 235 271 86 0 chr9 1906754 1906824 -140364620 - MIR3 SINE MIR -15 193 118 310 286 22 22 chr9 1907014 1907105 -140364339 - HAL1 LINE L1 -172 2335 2245 21 57 0 0 chr9 1907338 1907373 -140364071 + AT_rich Low_complexity Low_complexity 1 35 0 443 269 42 12 chr9 1907856 1908023 -140363421 - LTR33A LTR ERVL -2 521 350 247 309 41 10 chr9 1908193 1908290 -140363154 - LTR33A LTR ERVL -365 158 59 575 235 55 67 chr9 1908445 1908700 -140362744 - HAL1 LINE L1 -803 1704 1453 195 114 0 0 chr9 1908702 1908737 -140362707 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 506 289 29 46 chr9 1908752 1908991 -140362453 + L2 LINE L2 2521 2755 -559 350 253 84 0 chr9 1908991 1909074 -140362370 - MLT1H LTR MaLR 0 549 460 227 200 0 147 chr9 1909243 1909318 -140362126 - MLT1H LTR MaLR -288 261 198 321 284 91 57 chr9 1909661 1909957 -140361487 + HAL1b LINE L1 219 524 -824 8605 221 20 16 chr9 1910138 1910574 -140360870 + L1 LINE L1 2605 3038 -3108 2370 86 3 0 chr9 1910574 1910876 -140360568 + AluY SINE Alu 1 303 -8 8605 221 20 16 chr9 1910876 1912521 -140358923 + L1 LINE L1 3038 4693 -1453 5277 149 50 3 chr9 1912521 1913520 -140357924 + L1PA16 LINE L1 5116 6157 -9 21 36 0 0 chr9 1913520 1913548 -140357896 + AT_rich Low_complexity Low_complexity 1 28 0 2003 173 17 11 chr9 1913697 1914049 -140357395 + THE1A LTR MaLR 2 355 0 12165 101 14 0 chr9 1914049 1915607 -140355837 + THE1A-int LTR MaLR 1 1580 0 2203 153 14 11 chr9 1915607 1915961 -140355483 + THE1A LTR MaLR 1 355 0 2068 133 0 0 chr9 1915998 1916306 -140355138 - AluSc SINE Alu 0 308 1 195 114 0 0 chr9 1916451 1916486 -140354958 + (TTCA)n Simple_repeat Simple_repeat 4 38 0 257 315 14 0 chr9 1916492 1916565 -140354879 - L2 LINE L2 -4 3309 3236 321 26 0 0 chr9 1916710 1916749 -140354695 + U5 snRNA snRNA 6 44 -72 1000 270 90 31 chr9 1917009 1917431 -140354013 - MLT1J2 LTR MaLR 0 450 4 2118 143 71 13 chr9 1918574 1918953 -140352491 - L1MB3 LINE L1 -8 6175 5775 1671 56 0 0 chr9 1919039 1919234 -140352210 + L1PA11 LINE L1 5980 6174 0 656 297 78 47 chr9 1919279 1919687 -140351757 - LTR16C LTR ERVL -10 481 61 880 291 80 40 chr9 1919804 1920179 -140351265 - MLT1J2 LTR MaLR -57 393 4 484 251 64 35 chr9 1920739 1920811 -140350633 + L1ME LINE L1 5579 5647 -474 940 284 219 7 chr9 1920811 1921241 -140350203 + LTR33 LTR ERVL 1 521 0 484 251 64 35 chr9 1921241 1921339 -140350105 + L1ME LINE L1 5647 5754 -367 183 129 0 0 chr9 1921637 1921668 -140349776 + (A)n Simple_repeat Simple_repeat 1 31 0 240 281 231 0 chr9 1921811 1921932 -140349512 - MIR SINE MIR -8 254 106 669 283 197 49 chr9 1922160 1922726 -140348718 - L2 LINE L2 -4 3309 2669 189 0 0 0 chr9 1922813 1922834 -140348610 + (A)n Simple_repeat Simple_repeat 1 21 0 1397 224 131 57 chr9 1922861 1923366 -140348078 - MLT1F LTR MaLR 0 542 1 2593 102 5 8 chr9 2025887 2026261 -140245183 + THE1C LTR MaLR 3 375 0 413 267 10 0 chr9 2027580 2027681 -140243763 + MLT1E2 LTR MaLR 518 619 -7 2200 122 0 10 chr9 2028238 2028542 -140242902 + AluSx SINE Alu 2 302 -10 220 158 35 35 chr9 2030704 2030761 -140240683 + A-rich Low_complexity Low_complexity 2 58 0 875 315 99 19 chr9 2031974 2032396 -140239048 - L2 LINE L2 0 3313 2858 241 338 151 0 chr9 2033851 2033990 -140237454 + MER91A DNA MER1_type 3 162 -34 701 307 48 35 chr9 2035934 2036331 -140235113 - L1MC5 LINE L1 -531 7430 7029 2258 91 35 0 chr9 2036546 2036832 -140234612 - AluSq SINE Alu -17 296 1 315 181 145 12 chr9 2036995 2037078 -140234366 - L1MC4 LINE L1 -136 7906 7813 498 327 77 4 chr9 2039775 2040017 -140231427 + MIR SINE MIR 3 261 -1 2182 128 3 3 chr9 2040152 2040458 -140230986 - AluSx SINE Alu -6 306 1 670 261 44 32 chr9 2041412 2041661 -140229783 + MIR SINE MIR 6 257 -5 204 329 92 40 chr9 2041668 2041820 -140229624 - L2 LINE L2 -8 3264 3105 2858 13 0 3 chr9 2042128 2042440 -140229004 - AluYa5 SINE Alu 0 311 1 264 281 135 52 chr9 2042452 2042703 -140228741 - L2 LINE L2 -248 3024 2753 248 137 0 20 chr9 2043219 2043270 -140228174 + LTR33A LTR ERVL 4 53 -470 22 0 0 0 chr9 2043290 2043312 -140228132 + AT_rich Low_complexity Low_complexity 1 22 0 559 301 56 10 chr9 2043313 2043509 -140227935 - MIR SINE MIR -56 206 2 270 344 11 11 chr9 2043990 2044083 -140227361 + MIR3 SINE MIR 67 159 -49 213 39 0 0 chr9 2044246 2044272 -140227172 + (TG)n Simple_repeat Simple_repeat 1 26 0 403 326 7 14 chr9 2044283 2044421 -140227023 - MIR SINE MIR -98 164 28 209 188 0 75 chr9 2045078 2045158 -140226286 + (TATATG)n Simple_repeat Simple_repeat 5 78 0 1588 175 58 7 chr9 2045192 2045483 -140225961 - AluJo SINE Alu -1 311 6 2446 74 0 3 chr9 2045579 2045875 -140225569 - AluY SINE Alu -16 295 1 686 301 122 34 chr9 2046143 2046611 -140224833 - LTR33A LTR ERVL -9 514 6 3585 39 15 2 chr9 2046671 2047130 -140224314 + L1PA5 LINE L1 5686 6150 -4 251 188 42 0 chr9 2047398 2047446 -140223998 + MIR SINE MIR 94 143 -119 869 237 54 0 chr9 2051060 2051246 -140220198 + Tigger7 DNA MER2_type 7 202 -2285 1430 216 96 35 chr9 2053285 2053775 -140217669 - MLT2B1 LTR ERVL 0 520 1 261 338 42 0 chr9 2054253 2054395 -140217049 + MER5A DNA MER1_type 40 187 -2 306 73 0 0 chr9 2054409 2054450 -140216994 + (TCCA)n Simple_repeat Simple_repeat 3 43 0 340 327 7 4 chr9 2055221 2055510 -140215934 + (CA)n Simple_repeat Simple_repeat 1 290 0 238 216 98 49 chr9 2056294 2056396 -140215048 + LTR16C LTR ERVL 385 491 0 247 286 36 0 chr9 2056982 2057066 -140214378 - MIR SINE MIR -70 138 52 376 321 47 21 chr9 2058552 2058745 -140212699 - L1MEd LINE L1 -5920 199 2 239 312 128 0 chr9 2058863 2058988 -140212456 - L1M4 LINE L1 -1988 4158 4018 7596 17 0 0 chr9 2058994 2060329 -140211115 - L1PA3 LINE L1 0 6155 4821 6117 38 3 0 chr9 2060329 2061103 -140210341 + L1P LINE L1 3790 4565 -1581 220 320 70 55 chr9 2062485 2062613 -140208831 - L2 LINE L2 -1 3271 3142 1184 282 73 18 chr9 2063579 2064072 -140207372 - LTR33 LTR ERVL 0 521 2 391 252 137 33 chr9 2065145 2065374 -140206070 - MLT1G3 LTR MaLR -171 371 135 276 313 172 0 chr9 2066036 2066164 -140205280 + MIR SINE MIR 57 206 -56 583 203 0 34 chr9 2066226 2066344 -140205100 - MER58B DNA MER1_type -1 340 227 249 366 16 52 chr9 2067672 2067866 -140203578 + MIR SINE MIR 6 192 -70 930 247 113 53 chr9 2068145 2068367 -140203077 + MLT1L LTR MaLR 1 208 -303 850 252 61 0 chr9 2068367 2068613 -140202831 - MIR SINE MIR 0 262 2 930 247 113 53 chr9 2068613 2068946 -140202498 + MLT1L LTR MaLR 208 507 -4 204 313 38 12 chr9 2069039 2069119 -140202325 + L3 LINE CR1 1480 1561 -16 961 135 7 0 chr9 2069461 2069609 -140201835 + THE1B LTR MaLR 216 364 0 10081 98 37 40 chr9 2069609 2071194 -140200250 + THE1B-int LTR MaLR 1 1580 0 2616 110 0 0 chr9 2071194 2071558 -140199886 + THE1B LTR MaLR 1 364 0 303 378 58 29 chr9 2071568 2071809 -140199635 + L1 LINE L1 4531 4778 -1368 2550 66 0 3 chr9 2071996 2072297 -140199147 + AluY SINE Alu 2 301 -10 431 241 186 0 chr9 2072458 2072603 -140198841 + MER5A DNA MER1_type 10 181 -8 2316 235 51 46 chr9 2072840 2073594 -140197850 - L1M4 LINE L1 -1778 4368 3608 1366 171 98 29 chr9 2073594 2073869 -140197575 - AluJb SINE Alu -18 294 1 2316 235 51 46 chr9 2073869 2073880 -140197564 - L1M4 LINE L1 -2538 3608 3599 673 249 80 20 chr9 2073875 2074076 -140197368 - L1MD2 LINE L1 -16 6343 6131 * 255 197 237 0 chr9 2074318 2074394 -140197050 - L1MD2 LINE L1 -543 5699 5606 * 478 242 113 36 chr9 2074393 2074587 -140196857 - L1M4 LINE L1 -2523 3623 3415 504 336 195 23 chr9 2075205 2076039 -140195405 + L2 LINE L2 1167 2144 -1170 5256 88 11 49 chr9 2076096 2077128 -140194316 + L1MA3 LINE L1 4182 6287 -18 5256 102 13 45 chr9 2077128 2077857 -140193587 + L1MA3 LINE L1 5423 6119 -186 2618 64 0 10 chr9 2077857 2078171 -140193273 + AluY SINE Alu 1 311 0 5256 102 13 45 chr9 2078171 2078352 -140193092 + L1MA3 LINE L1 6119 6304 -1 5256 88 11 49 chr9 2078352 2078370 -140193074 + L1MA3 LINE L1 6287 6304 -1 25 0 0 0 chr9 2078392 2078417 -140193027 + AT_rich Low_complexity Low_complexity 1 25 0 25 0 0 0 chr9 2078583 2078608 -140192836 + AT_rich Low_complexity Low_complexity 1 25 0 1020 160 0 0 chr9 2078608 2078752 -140192692 - AluSg/x SINE Alu -23 287 144 2507 79 0 3 chr9 2081334 2081638 -140189806 + AluY SINE Alu 1 303 -8 1135 146 0 6 chr9 2081638 2081809 -140189635 + AluSp SINE Alu 134 303 -10 276 165 21 62 chr9 2082260 2082357 -140189087 + (CAGAGA)n Simple_repeat Simple_repeat 6 98 0 2383 88 0 0 chr9 2091066 2091363 -140180081 + AluSg SINE Alu 1 297 -13 23 54 0 0 chr9 2091379 2091416 -140180028 + AT_rich Low_complexity Low_complexity 1 37 0 1974 141 39 33 chr9 2091440 2091802 -140179642 - THE1B LTR MaLR 0 364 1 311 0 26 0 chr9 2092773 2092812 -140178632 + (TG)n Simple_repeat Simple_repeat 2 41 0 604 292 23 88 chr9 2093364 2093795 -140177649 + L2 LINE L2 2649 3054 -218 940 215 21 0 chr9 2093804 2093990 -140177454 - MER58A DNA MER1_type 0 224 35 295 241 38 13 chr9 2094119 2094198 -140177246 + L2 LINE L2 3225 3305 -8 237 65 0 0 chr9 2094273 2094304 -140177140 + (TG)n Simple_repeat Simple_repeat 1 31 0 227 79 26 0 chr9 2094304 2094342 -140177102 + (GA)n Simple_repeat Simple_repeat 2 40 0 1869 203 29 61 chr9 2094468 2094738 -140176706 + L1MA9 LINE L1 5832 6109 -203 2632 49 0 3 chr9 2094738 2095042 -140176402 + AluY SINE Alu 1 303 -8 1869 203 29 61 chr9 2095042 2095217 -140176227 + L1MA9 LINE L1 6109 6262 -50 1854 166 0 7 chr9 2095217 2095506 -140175938 - AluJo SINE Alu -25 287 1 1869 203 29 61 chr9 2095506 2095551 -140175893 + L1MA9 LINE L1 6262 6307 -5 21 36 0 0 chr9 2095560 2095588 -140175856 + AT_rich Low_complexity Low_complexity 1 28 0 456 312 133 48 chr9 2095697 2096072 -140175372 - MLT1K LTR MaLR -33 555 149 245 279 58 0 chr9 2099271 2099375 -140172069 + MIR SINE MIR 29 138 -124 185 189 0 0 chr9 2099376 2099413 -140172031 + L2 LINE L2 3213 3249 -23 236 241 69 103 chr9 2100072 2100127 -140171317 - MLT1C LTR MaLR -15 452 397 1961 66 0 0 chr9 2100127 2100383 -140171061 + L1PA5 LINE L1 5898 6153 -1 236 241 69 103 chr9 2100383 2100501 -140170943 - MLT1C LTR MaLR -70 397 285 231 235 69 39 chr9 2100548 2100650 -140170794 - MLT1C LTR MaLR -273 194 90 1068 222 28 131 chr9 2101585 2102044 -140169400 - MLT2D LTR ERVL 0 414 3 538 26 26 93 chr9 2102166 2102359 -140169085 + (TA)n Simple_repeat Simple_repeat 1 180 0 324 252 52 102 chr9 2102363 2102736 -140168708 - L1MC5 LINE L1 -204 8037 1980 440 169 0 0 chr9 2103300 2103377 -140168067 + MLT1F1 LTR MaLR 491 567 0 2235 78 58 3 chr9 2104826 2105121 -140166323 + AluY SINE Alu 1 311 0 314 251 115 20 chr9 2105275 2105393 -140166051 - MIR SINE MIR -46 162 33 2206 246 46 26 chr9 2107345 2107477 -140163967 + MER67C LTR ERV1 1 129 -581 2179 103 13 3 chr9 2107477 2107779 -140163665 - AluSc SINE Alu -4 305 1 2206 246 46 26 chr9 2107779 2108342 -140163102 + MER67C LTR ERV1 129 710 0 668 195 157 5 chr9 2109389 2109599 -140161845 + MLT1D LTR MaLR 107 348 -157 234 245 28 56 chr9 2111826 2111969 -140159475 + CT-rich Low_complexity Low_complexity 3 141 0 208 239 15 15 chr9 2113281 2113348 -140158096 + CT-rich Low_complexity Low_complexity 1 67 0 2274 116 7 3 chr9 2113722 2114137 -140157307 + AluSq SINE Alu 1 416 0 1072 101 12 0 chr9 2114150 2114319 -140157125 + (GAAA)n Simple_repeat Simple_repeat 1 171 0 288 0 0 0 chr9 2114323 2114355 -140157089 + (GGAA)n Simple_repeat Simple_repeat 2 33 0 603 315 0 28 chr9 2115445 2115623 -140155821 + MLT1G1 LTR MaLR 1 173 -422 744 269 14 5 chr9 2115768 2115980 -140155464 + MLT1G1 LTR MaLR 176 389 -206 2397 261 92 8 chr9 2119978 2120730 -140150714 - MER21B LTR ERV1 0 863 49 292 294 0 0 chr9 2120741 2120809 -140150635 - MER21B LTR ERV1 -777 86 19 317 244 37 0 chr9 2120922 2121004 -140150440 + MLT1E2 LTR MaLR 124 208 -418 261 259 0 0 chr9 2121326 2121384 -140150060 + MARNA DNA Mariner 436 493 -93 351 0 0 0 chr9 2123025 2123064 -140148380 + (TTA)n Simple_repeat Simple_repeat 2 40 0 412 234 43 0 chr9 2123189 2123283 -140148161 + MIR SINE MIR 87 184 -78 663 241 0 0 chr9 2123301 2123438 -140148006 + L1MD1 LINE L1 5599 5735 -507 1702 221 48 0 chr9 2123441 2123792 -140147652 - MER74A LTR ERVL 0 558 191 3370 137 101 51 chr9 2123792 2124594 -140146850 + MER21A LTR ERV1 1 915 -16 738 184 61 31 chr9 2124635 2124798 -140146646 - MER74A LTR ERVL -390 168 1 507 138 43 11 chr9 2124802 2124896 -140146548 + L1MD1 LINE L1 5764 5860 -499 471 233 153 25 chr9 2124907 2125070 -140146374 + L1MD1 LINE L1 5992 6175 -67 5221 167 58 28 chr9 2125175 2125627 -140145817 - L1M2 LINE L1 -819 5493 5056 1705 27 0 0 chr9 2125627 2125811 -140145633 - AluY SINE Alu -127 184 1 5221 167 58 28 chr9 2125811 2125901 -140145543 - L1M2 LINE L1 -1256 5056 4970 2281 171 17 2 chr9 2125901 2126323 -140145121 - MSTC LTR MaLR 0 428 1 5221 167 58 28 chr9 2126323 2126775 -140144669 - L1M2 LINE L1 -1342 4970 4533 2246 113 7 0 chr9 2126775 2127076 -140144368 - AluSq SINE Alu -10 303 1 5221 167 58 28 chr9 2127076 2127452 -140143992 - L1M2 LINE L1 -1779 4533 3998 310 275 50 33 chr9 2127606 2127726 -140143718 - L1MEd LINE L1 -5298 821 700 33637 52 6 3 chr9 2127902 2132305 -140139139 - L1P LINE L1 -1316 4830 414 198 24 24 49 chr9 2132379 2132420 -140139024 + (TA)n Simple_repeat Simple_repeat 1 40 0 440 302 9 0 chr9 2132553 2132659 -140138785 + MIR SINE MIR 45 151 -111 461 233 74 5 chr9 2132660 2132823 -140138621 + MER63 DNA MER1_type 1 1656 -32 387 282 0 27 chr9 2132825 2132935 -140138509 + MIR SINE MIR 156 262 0 231 190 0 0 chr9 2133091 2133149 -140138295 + T-rich Low_complexity Low_complexity 1 58 0 2815 169 5 46 chr9 2134026 2134616 -140136828 - L1MB3 LINE L1 -177 6006 5441 240 111 0 0 chr9 2138348 2138384 -140133060 + (A)n Simple_repeat Simple_repeat 1 36 0 667 270 61 22 chr9 2139384 2139614 -140131830 - MIR SINE MIR -16 246 8 241 322 34 93 chr9 2142509 2142832 -140128612 - L2 LINE L2 -7 3265 2962 487 264 31 8 chr9 2143899 2144028 -140127416 + MLT1I LTR MaLR 104 235 -174 288 0 0 0 chr9 2144405 2144437 -140127007 + (A)n Simple_repeat Simple_repeat 1 32 0 332 358 129 29 chr9 2144691 2144970 -140126474 + L2 LINE L2 2966 3272 0 435 331 121 30 chr9 2145333 2145839 -140125605 + L1ME3 LINE L1 5341 5915 -255 2426 78 0 0 chr9 2145858 2146152 -140125292 - AluSg SINE Alu -15 295 2 200 216 59 0 chr9 2146584 2146635 -140124809 - L2 LINE L2 -2 3311 3258 189 300 133 11 chr9 2146836 2146926 -140124518 - MIR SINE MIR -25 237 137 430 298 34 0 chr9 2147053 2147209 -140124235 - MER20B DNA MER1_type -23 196 30 199 290 93 65 chr9 2150247 2150354 -140121090 - L2 LINE L2 -4 3309 3200 1950 166 132 3 chr9 2150453 2150832 -140120612 + MSTA LTR MaLR 1 428 0 253 363 98 0 chr9 2150966 2151068 -140120376 - MIR3 SINE MIR -3 205 94 520 216 11 58 chr9 2151788 2151978 -140119466 - L1MDb LINE L1 -2125 3955 3775 483 167 79 18 chr9 2151975 2152089 -140119355 - L1MB3 LINE L1 -2 6181 6061 * 999 156 6 6 chr9 2152129 2152309 -140119135 - L1MB3 LINE L1 -89 6094 5915 3652 239 60 19 chr9 2152310 2152656 -140118788 - L1MDb LINE L1 -2292 3788 3458 2072 134 0 0 chr9 2152656 2152946 -140118498 + AluSx SINE Alu 3 292 -20 3652 239 60 19 chr9 2152946 2153790 -140117654 - L1MDb LINE L1 -2622 3458 2549 576 268 40 30 chr9 2153772 2154192 -140117252 - L1MDb LINE L1 -5178 892 463 * 250 277 89 9 chr9 2154332 2154444 -140117000 - L1MDb LINE L1 -5683 387 267 2549 44 0 3 chr9 2155236 2155529 -140115915 - AluY SINE Alu -15 296 5 202 333 50 20 chr9 2155666 2155867 -140115577 - L3 LINE CR1 -60 1517 1311 552 260 40 0 chr9 2155920 2156093 -140115351 + MER68 LTR ERV1 1 180 -382 405 200 124 119 chr9 2156128 2156338 -140115106 + MER68 LTR ERV1 351 603 -2 3288 200 64 9 chr9 2157300 2158228 -140113216 + L1M3 LINE L1 4509 5485 -698 186 229 180 16 chr9 2158644 2158766 -140112678 + L2 LINE L2 2910 3051 -262 330 196 0 0 chr9 2158998 2159090 -140112354 + (TGGA)n Simple_repeat Simple_repeat 1 92 0 578 260 25 51 chr9 2160033 2160229 -140111215 + MIR3 SINE MIR 14 204 -4 2430 93 3 6 chr9 2161980 2162292 -140109152 - AluSp SINE Alu -2 311 1 231 36 0 0 chr9 2162355 2162383 -140109061 + (CA)n Simple_repeat Simple_repeat 2 29 0 282 273 52 0 chr9 2162898 2162975 -140108469 + MER5A DNA MER1_type 5 85 -104 232 277 9 9 chr9 2163053 2163165 -140108279 + (CA)n Simple_repeat Simple_repeat 2 113 0 1410 189 0 26 chr9 2163482 2163772 -140107672 + AluJo SINE Alu 25 307 0 262 302 148 16 chr9 2163910 2164099 -140107345 - MIR SINE MIR -26 236 23 663 262 102 44 chr9 2166445 2166789 -140104655 + MLT1B LTR MaLR 1 364 -26 617 264 39 14 chr9 2167227 2167435 -140104009 + MLT1A1 LTR MaLR 153 365 0 237 209 75 0 chr9 2167697 2167764 -140103680 - MLT1J LTR MaLR -341 170 99 27 29 0 0 chr9 2170651 2170685 -140100759 + AT_rich Low_complexity Low_complexity 1 34 0 71 106 0 0 chr9 2170767 2170908 -140100536 + AT_rich Low_complexity Low_complexity 1 141 0 319 258 57 69 chr9 2173939 2174098 -140097346 + MIR SINE MIR 98 254 -8 449 141 0 0 chr9 2174197 2174268 -140097176 - THE1B LTR MaLR 0 375 305 7250 52 2 1 chr9 2174269 2175280 -140096164 + L1PA5 LINE L1 5132 6148 -6 26 0 0 0 chr9 2175514 2175540 -140095904 + AT_rich Low_complexity Low_complexity 1 26 0 1895 117 9 37 chr9 2175540 2175864 -140095580 - THE1B LTR MaLR -49 315 1 314 344 0 0 chr9 2176044 2176134 -140095310 + L1MC4 LINE L1 6614 6703 -1339 306 352 0 0 chr9 2176066 2176154 -140095290 - L1MC4 LINE L1 -1339 6703 6616 * 210 246 0 0 chr9 2176166 2176227 -140095217 + (TA)n Simple_repeat Simple_repeat 1 61 0 353 39 19 0 chr9 2176228 2176280 -140095164 - MLT2A1 LTR ERVL -391 53 1 3054 74 0 7 chr9 2176345 2176358 -140095086 - MLT2A1 LTR ERVL -40 404 392 336 102 0 0 chr9 2176358 2176407 -140095037 + (TG)n Simple_repeat Simple_repeat 2 50 0 3054 74 0 7 chr9 2176407 2176800 -140094644 - MLT2A1 LTR ERVL -52 392 1 1953 159 49 138 chr9 2176800 2177459 -140093985 + LTR8A LTR ERV1 128 727 0 688 231 30 12 chr9 2177736 2177905 -140093539 + MER69A DNA AcHobo 3 174 -3 288 340 50 70 chr9 2178143 2178402 -140093042 + MIR SINE MIR 3 256 -6 387 351 57 19 chr9 2178550 2178812 -140092632 + MLT1J LTR MaLR 153 424 -87 835 191 26 0 chr9 2178825 2178977 -140092467 - MER5A DNA MER1_type -30 159 4 290 205 12 12 chr9 2178980 2179063 -140092381 + MLT1J LTR MaLR 416 498 -13 269 188 0 0 chr9 2179159 2179207 -140092237 - L2 LINE L2 -3 3310 3263 808 176 79 0 chr9 2179394 2179559 -140091885 - MER5B DNA MER1_type 0 178 1 204 210 222 12 chr9 2179570 2179651 -140091793 - MIR SINE MIR -90 118 21 355 292 136 33 chr9 2180046 2180289 -140091155 - L3 LINE CR1 -2 1575 1308 1386 271 61 67 chr9 2180941 2181661 -140089783 - MER21B LTR ERV1 -124 739 24 871 302 120 35 chr9 2182099 2182592 -140088852 - L3 LINE CR1 -78 1499 965 322 242 65 81 chr9 2182878 2183002 -140088442 + MLT1K LTR MaLR 380 501 -87 876 296 95 5 chr9 2183002 2183381 -140088063 - MER95 LTR ERV 0 431 19 581 290 54 67 chr9 2183389 2183720 -140087724 - MER89-int LTR ERV1 -479 7337 7011 404 190 13 0 chr9 2183925 2184004 -140087440 + Tigger5 DNA MER2_type 1 80 -2243 320 217 43 0 chr9 2184004 2184073 -140087371 - Tigger5 DNA MER2_type -5 2318 2247 284 262 0 36 chr9 2184069 2184153 -140087291 + Tigger5 DNA MER2_type 2243 2323 0 * 297 0 0 0 chr9 2185220 2185253 -140086191 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1501 162 68 54 chr9 2185258 2185536 -140085908 - AluJo SINE Alu -30 282 1 846 299 39 82 chr9 2185780 2187157 -140084287 - MER89-int LTR ERV1 -1390 6147 2017 276 225 87 69 chr9 2187280 2187453 -140083991 - MER89-int LTR ERV1 -1799 3155 2980 2648 138 74 5 chr9 2187495 2187915 -140083529 - LTR47A LTR ERVL 0 452 4 233 69 0 0 chr9 2187915 2187944 -140083500 - LTR47A LTR ERVL -421 31 3 2502 68 3 3 chr9 2189116 2189426 -140082018 - AluY SINE Alu -1 310 1 408 316 13 19 chr9 2189608 2189763 -140081681 - MER89-int LTR ERV1 -5429 1372 1219 5797 141 21 25 chr9 2190056 2190813 -140080631 - L1PA15 LINE L1 -1 6164 5425 1911 149 0 17 chr9 2190813 2191141 -140080303 - AluSg SINE Alu 0 310 1 5797 141 21 25 chr9 2191141 2191549 -140079895 - L1PA15 LINE L1 -740 5425 5017 16585 143 11 26 chr9 2191557 2192802 -140078642 - L1PA10 LINE L1 0 6168 4906 2203 128 0 0 chr9 2192802 2193100 -140078344 + AluSx SINE Alu 1 298 -14 16585 143 11 26 chr9 2193100 2195434 -140076010 - L1PA10 LINE L1 -1262 4906 2640 722 192 0 8 chr9 2195435 2195555 -140075889 - THE1B LTR MaLR -7 357 239 856 314 116 16 chr9 2195586 2196019 -140075425 - L3 LINE CR1 -901 676 201 294 347 5 24 chr9 2196990 2197175 -140074269 + MIR SINE MIR 36 212 -50 1443 179 40 27 chr9 2197794 2198095 -140073349 + AluSx SINE Alu 1 305 -7 3702 147 47 66 chr9 2198309 2198881 -140072563 + LTR8A LTR ERV1 1 557 -170 1687 194 7 13 chr9 2198881 2199191 -140072253 + AluJb SINE Alu 1 308 -4 3702 147 47 66 chr9 2199191 2199359 -140072085 + LTR8A LTR ERV1 557 727 0 1103 228 72 79 chr9 2199663 2200082 -140071362 + L2 LINE L2 2636 3054 -259 1747 219 36 11 chr9 2200082 2200447 -140070997 + MLT1A2 LTR MaLR 1 374 0 1103 228 72 79 chr9 2200447 2200696 -140070748 + L2 LINE L2 3054 3303 -10 504 315 56 41 chr9 2200696 2200862 -140070582 - L1ME LINE L1 -404 5717 5555 1818 179 7 0 chr9 2200862 2201164 -140070280 + AluJb SINE Alu 1 304 -8 504 315 56 41 chr9 2201164 2201510 -140069934 - L1ME LINE L1 -566 5555 5200 289 319 40 36 chr9 2201670 2201918 -140069526 - L1ME LINE L1 -1124 5022 4774 2124 144 0 0 chr9 2202292 2202604 -140068840 - AluSx SINE Alu 0 312 1 2136 188 86 46 chr9 2202793 2202897 -140068547 - LTR49 LTR ERV1 0 595 497 2824 128 36 5 chr9 2202897 2203312 -140068132 + MSTA LTR MaLR 1 428 0 2136 188 86 46 chr9 2203312 2203767 -140067677 - LTR49 LTR ERV1 -98 497 14 2040 127 0 0 chr9 2203767 2204082 -140067362 - AluSx SINE Alu 0 315 1 1990 146 33 0 chr9 2204511 2204813 -140066631 - AluSx SINE Alu 0 312 1 187 41 41 122 chr9 2205140 2205189 -140066255 - MIR3 SINE MIR -32 176 132 2850 198 53 52 chr9 2205218 2205911 -140065533 + LTR8A LTR ERV1 34 727 0 308 236 28 47 chr9 2205950 2206056 -140065388 + L1MC4 LINE L1 7899 8002 -40 1304 171 19 27 chr9 2206199 2206321 -140065123 + MER34B LTR ERV1 1 122 -443 2734 152 130 11 chr9 2206321 2206529 -140064915 + LTR49 LTR ERV1 1 183 -412 249 33 0 0 chr9 2206529 2206559 -140064885 + (CA)n Simple_repeat Simple_repeat 2 31 0 2734 152 130 11 chr9 2206559 2206882 -140064562 + LTR49 LTR ERV1 183 595 0 1304 171 19 27 chr9 2206882 2207016 -140064428 + MER34B LTR ERV1 122 255 -310 2395 151 26 3 chr9 2207018 2207402 -140064042 - MER57A LTR ERV1 -3 400 8 289 91 23 0 chr9 2207403 2207447 -140063997 + MER34B LTR ERV1 251 295 -270 2684 179 33 81 chr9 2207581 2208224 -140063220 - LTR9 LTR ERV1 0 612 1 1537 170 44 11 chr9 2208224 2208494 -140062950 - AluJo SINE Alu -33 279 1 1434 124 21 8 chr9 2208966 2209196 -140062248 + MER34B LTR ERV1 303 535 -30 1438 194 112 57 chr9 2209196 2209635 -140061809 + LTR56 LTR ERV1 1 437 0 2266 191 91 117 chr9 2209782 2210527 -140060917 + LTR8A LTR ERV1 2 727 0 2984 142 47 40 chr9 2210975 2211560 -140059884 - LTR49 LTR ERV1 -3 650 1 2825 159 37 12 chr9 2211560 2212070 -140059374 - MER34C LTR ERV1 -24 561 39 2742 100 47 10 chr9 2212159 2212607 -140058837 + LTR56 LTR ERV1 6 437 0 2187 122 0 3 chr9 2212787 2213091 -140058353 - AluSg SINE Alu -7 303 1 848 229 92 42 chr9 2213185 2213425 -140058019 + MLT1B LTR MaLR 3 254 -136 9677 202 15 18 chr9 2213436 2215886 -140055558 - L1P4 LINE L1 -588 5578 3141 901 261 35 0 chr9 2216029 2216286 -140055158 + Charlie5 DNA MER1_type 2 267 -2345 197 65 32 0 chr9 2216287 2216318 -140055126 + (TTTTA)n Simple_repeat Simple_repeat 4 35 0 683 176 8 25 chr9 2216321 2216440 -140055004 - AluJb SINE Alu -194 118 2 1245 239 25 28 chr9 2216445 2216614 -140054830 + Charlie5 DNA MER1_type 256 425 -2199 1668 150 221 11 chr9 2216614 2216782 -140054662 - MSTA LTR MaLR 0 428 297 186 43 0 0 chr9 2216782 2216805 -140054639 + (GA)n Simple_repeat Simple_repeat 1 23 0 1668 150 221 11 chr9 2216805 2216989 -140054455 - MSTA LTR MaLR -131 297 2 1245 239 25 28 chr9 2216989 2217146 -140054298 + Charlie5 DNA MER1_type 425 581 -2043 1924 181 111 2 chr9 2217342 2217811 -140053633 + Charlie5 DNA MER1_type 924 1443 -1169 276 222 50 119 chr9 2218054 2218306 -140053138 - LTR37A LTR ERV1 -165 261 26 2449 124 55 6 chr9 2218306 2218653 -140052791 - THE1B LTR MaLR 0 364 1 2673 156 27 9 chr9 2218862 2219312 -140052132 - MER65C LTR ERV1 -2 459 2 2371 86 0 7 chr9 2219759 2220062 -140051382 + AluY SINE Alu 2 302 -9 268 167 21 0 chr9 2220108 2220156 -140051288 + MLT1E2 LTR MaLR 2 50 -604 2104 161 76 55 chr9 2220183 2220501 -140050943 + MER31A LTR ERV1 1 334 -151 2584 39 6 6 chr9 2220501 2220812 -140050632 - AluY SINE Alu 0 311 1 2104 161 76 55 chr9 2220812 2220965 -140050479 + MER31A LTR ERV1 334 482 -3 1569 214 122 57 chr9 2220974 2221450 -140049994 + MLT1E2 LTR MaLR 120 626 0 3836 110 15 19 chr9 2221547 2222073 -140049371 - MER1A DNA MER1_type -3 524 1 274 257 112 62 chr9 2222135 2222314 -140049130 - MIR SINE MIR -15 247 60 2052 175 77 44 chr9 2222370 2222822 -140048622 - MLT1C LTR MaLR 0 467 1 203 365 0 0 chr9 2223330 2223415 -140048029 - MIR SINE MIR -8 254 170 2429 86 0 0 chr9 2223632 2223933 -140047511 - AluSp SINE Alu -12 301 1 537 280 33 22 chr9 2224212 2224394 -140047050 - MIR SINE MIR -51 211 28 1906 249 50 21 chr9 2224503 2225024 -140046420 - MLT1F LTR MaLR 0 542 7 3843 131 24 15 chr9 2225026 2225615 -140045829 + LTR49 LTR ERV1 1 594 -1 267 208 10 146 chr9 2225872 2225968 -140045476 + MIR3 SINE MIR 96 178 -30 3349 130 45 2 chr9 2226049 2226540 -140044904 + MER41E LTR ERV1 1 512 0 211 321 38 38 chr9 2226576 2226707 -140044737 - MIR SINE MIR -58 150 20 232 250 17 0 chr9 2226785 2226845 -140044599 + (CTA)n Simple_repeat Simple_repeat 2 62 0 201 282 97 65 chr9 2226897 2227021 -140044423 - MIR SINE MIR -82 180 53 523 283 19 47 chr9 2227767 2227957 -140043487 - MIR SINE MIR -51 211 27 466 241 62 53 chr9 2227970 2228164 -140043280 - MIR SINE MIR -19 243 49 1461 231 89 100 chr9 2228234 2228533 -140042911 + L2 LINE L2 346 647 -2666 3643 158 82 32 chr9 2228533 2229225 -140042219 + LTR8A LTR ERV1 1 727 0 1461 231 89 100 chr9 2229225 2230004 -140041440 + L2 LINE L2 647 3308 -5 245 106 0 43 chr9 2230309 2230356 -140041088 + (CATA)n Simple_repeat Simple_repeat 1 45 0 243 216 0 54 chr9 2230357 2230407 -140041037 - L1MC4 LINE L1 -1342 6700 6654 1901 152 0 16 chr9 2230407 2230710 -140040734 - AluJo SINE Alu -6 306 9 243 216 0 54 chr9 2230710 2230733 -140040711 - L1MC4 LINE L1 -1388 6654 6631 605 292 11 11 chr9 2231402 2231580 -140039864 + MIR SINE MIR 8 185 -77 631 291 80 37 chr9 2231885 2232235 -140039209 - MLT1I LTR MaLR -38 371 7 268 326 121 7 chr9 2232304 2232445 -140038999 - MIR SINE MIR 0 262 106 1841 142 6 49 chr9 2232450 2232775 -140038669 + AluJb SINE Alu 1 311 -1 361 273 175 0 chr9 2232950 2233093 -140038351 + MER117 DNA MER1_type 4 171 -26 192 298 0 0 chr9 2233109 2233166 -140038278 + MIR SINE MIR 90 146 -62 2302 109 0 6 chr9 2233483 2233794 -140037650 - AluSx SINE Alu 0 312 4 801 302 67 27 chr9 2233935 2234263 -140037181 - LTR33 LTR ERVL -8 513 173 923 215 24 29 chr9 2235077 2235282 -140036162 - MER3 DNA MER1_type 0 209 6 413 294 123 0 chr9 2235446 2235616 -140035828 - MIR SINE MIR 0 262 72 232 234 62 0 chr9 2235620 2235684 -140035760 + MER116 DNA Mariner 11 78 -2 208 174 196 0 chr9 2235686 2235732 -140035712 - MIR SINE MIR -183 79 25 195 256 171 0 chr9 2235775 2235857 -140035587 + MIR SINE MIR 157 252 -10 761 111 151 58 chr9 2236459 2236599 -140034845 + MER53 DNA DNA 1 161 -28 1010 230 56 90 chr9 2236599 2236977 -140034467 + MLT1A1 LTR MaLR 1 365 0 761 111 151 58 chr9 2236977 2237008 -140034436 + MER53 DNA DNA 161 188 -1 753 212 35 6 chr9 2237174 2237344 -140034100 + MER5A DNA MER1_type 4 178 -11 413 306 50 25 chr9 2237354 2237514 -140033930 + MIR SINE MIR 25 188 -74 1042 204 37 28 chr9 2238049 2238265 -140033179 - MER20 DNA MER1_type -1 218 1 1026 203 20 15 chr9 2238375 2238603 -140032841 - AluJo SINE Alu 0 313 85 424 275 67 17 chr9 2238612 2238732 -140032712 - MIR SINE MIR -111 151 26 460 287 28 58 chr9 2239841 2240075 -140031369 + MIR SINE MIR 20 238 -24 221 311 59 42 chr9 2240079 2240198 -140031246 + MIR SINE MIR 106 226 -36 318 311 120 18 chr9 2240488 2240655 -140030789 + MER91B DNA MER1_type 1 184 -6 432 269 168 0 chr9 2240946 2241095 -140030349 + MIR SINE MIR 20 193 -69 22 0 0 0 chr9 2241117 2241139 -140030305 + AT_rich Low_complexity Low_complexity 1 22 0 1591 51 51 0 chr9 2241419 2241616 -140029828 - L1PA4 LINE L1 -2 6153 5947 2064 162 3 26 chr9 2241817 2242162 -140029282 - MER1B DNA MER1_type 0 337 1 327 257 95 19 chr9 2243210 2243315 -140028129 + MARNA DNA Mariner 66 178 -408 499 307 70 23 chr9 2243400 2243615 -140027829 + MARNA DNA Mariner 313 537 -49 423 264 75 87 chr9 2243943 2244498 -140026946 + LTR50 LTR ERVL 1 520 -3 351 221 75 29 chr9 2245738 2245895 -140025549 + MLT1H LTR MaLR 12 177 -334 385 245 47 63 chr9 2246004 2246190 -140025254 + MLT1H LTR MaLR 333 530 -19 125 81 0 0 chr9 2246216 2246546 -140024898 + AT_rich Low_complexity Low_complexity 1 300 0 111 89 0 0 chr9 2246550 2246843 -140024601 + AT_rich Low_complexity Low_complexity 1 293 0 566 277 135 31 chr9 2246987 2247276 -140024168 + L2 LINE L2 2995 3313 0 23 0 0 0 chr9 2247989 2248012 -140023432 + AT_rich Low_complexity Low_complexity 1 23 0 286 244 47 110 chr9 2248490 2248617 -140022827 - MIR3 SINE MIR -53 155 37 461 239 92 8 chr9 2249047 2249177 -140022267 + MIR SINE MIR 14 154 -108 215 326 76 22 chr9 2252073 2252165 -140019279 - L2 LINE L2 -44 3228 3132 819 284 47 0 chr9 2252589 2252825 -140018619 - L1MC/D LINE L1 -2045 5763 5517 496 263 56 15 chr9 2252828 2253074 -140018370 - L1MC/D LINE L1 -748 5398 5220 330 213 118 66 chr9 2253201 2253337 -140018107 - L1MC/D LINE L1 -1156 4990 4848 2085 142 0 16 chr9 2253675 2253985 -140017459 + AluSx SINE Alu 1 305 -7 2288 114 0 0 chr9 2254040 2254339 -140017105 - AluSx SINE Alu -13 299 1 264 299 123 75 chr9 2254577 2254634 -140016810 + L3 LINE CR1 1380 1433 -144 2899 89 5 5 chr9 2254634 2255014 -140016430 - L1PA8 LINE L1 -1 6171 5792 264 299 123 75 chr9 2255014 2255143 -140016301 + L3 LINE CR1 1433 1575 -2 301 211 132 0 chr9 2255488 2255564 -140015880 - MIR SINE MIR -75 187 102 189 74 0 0 chr9 2255595 2255622 -140015822 + (TTA)n Simple_repeat Simple_repeat 2 28 0 202 286 179 9 chr9 2255670 2255782 -140015662 + L2 LINE L2 3151 3281 -32 404 211 0 0 chr9 2255799 2255875 -140015569 + L1MD1 LINE L1 6156 6231 -11 262 177 39 21 chr9 2256065 2256138 -140015306 + MIR SINE MIR 91 169 -39 335 164 0 14 chr9 2256421 2256494 -140014950 + MER3 DNA MER1_type 96 167 -42 31 0 0 0 chr9 2256502 2256533 -140014911 + AT_rich Low_complexity Low_complexity 1 31 0 1549 188 7 24 chr9 2256533 2256825 -140014619 - AluJb SINE Alu -25 287 1 417 104 60 0 chr9 2256825 2256892 -140014552 + MER3 DNA MER1_type 139 209 0 191 319 149 11 chr9 2257772 2257866 -140013578 - MIR3 SINE MIR -47 161 55 395 269 41 58 chr9 2258172 2258343 -140013101 - MIR3 SINE MIR -25 183 16 24 0 0 0 chr9 2259463 2259487 -140011957 + AT_rich Low_complexity Low_complexity 1 24 0 628 284 38 38 chr9 2259892 2260156 -140011288 - MLT1J LTR MaLR -8 503 240 864 233 10 26 chr9 2260157 2260350 -140011094 + AluJo SINE Alu 122 311 -1 310 258 47 74 chr9 2260835 2261025 -140010419 - L1ME4a LINE L1 -2 6119 5935 3042 60 19 0 chr9 2261066 2261434 -140010010 - L1PA8 LINE L1 -7 6165 5791 564 283 30 18 chr9 2261805 2261971 -140009473 + MIR3 SINE MIR 34 201 -7 229 189 75 0 chr9 2262047 2262100 -140009344 + L2 LINE L2 3257 3313 0 322 292 62 59 chr9 2262208 2262356 -140009088 - L1M4 LINE L1 -1630 4516 4370 2028 138 0 10 chr9 2262356 2262654 -140008790 - AluSx SINE Alu -17 295 1 322 292 62 59 chr9 2262654 2262909 -140008535 - L1M4 LINE L1 -1776 4370 4112 869 265 73 83 chr9 2262914 2263441 -140008003 - L1M4 LINE L1 -996 5150 4632 1381 170 134 0 chr9 2263441 2263694 -140007750 - AluSx SINE Alu -25 287 1 869 265 73 83 chr9 2263694 2263948 -140007496 - L1M4 LINE L1 -1514 4632 4377 294 214 0 0 chr9 2263950 2264006 -140007438 + MLT1F1 LTR MaLR 3 58 -509 867 248 63 38 chr9 2264047 2264285 -140007159 + MLT1F1 LTR MaLR 50 293 -274 366 315 81 35 chr9 2264363 2264769 -140006675 - L1M4 LINE L1 -1757 4389 3965 411 21 0 0 chr9 2264783 2264831 -140006613 + (CA)n Simple_repeat Simple_repeat 2 49 0 308 313 15 37 chr9 2264839 2265002 -140006442 - L1ME4a LINE L1 -487 5634 5495 974 243 21 0 chr9 2265038 2265273 -140006171 - MIR SINE MIR 0 262 23 1438 195 47 0 chr9 2265275 2265552 -140005892 - AluJo SINE Alu -14 298 9 191 269 247 0 chr9 2265617 2265710 -140005734 - MIR SINE MIR -4 258 143 994 167 6 36 chr9 2265928 2266096 -140005348 - FRAM SINE Alu -3 163 1 500 307 98 19 chr9 2266158 2266373 -140005071 + MIR SINE MIR 20 251 -11 765 268 9 28 chr9 2266548 2266761 -140004683 - MIR SINE MIR -25 237 29 640 280 69 0 chr9 2267009 2267227 -140004217 + MIR SINE MIR 29 261 -1 258 244 144 11 chr9 2267793 2267883 -140003561 - MER5B DNA MER1_type -51 127 26 1047 171 15 20 chr9 2268563 2268762 -140002682 - AluJo SINE Alu -21 291 94 313 221 158 11 chr9 2268801 2268896 -140002548 + MIR3 SINE MIR 47 155 -53 255 297 30 20 chr9 2269700 2269801 -140001643 - MIR SINE MIR -50 212 111 34 0 0 0 chr9 2269990 2270024 -140001420 + AT_rich Low_complexity Low_complexity 1 34 0 1705 181 7 19 chr9 2270057 2270367 -140001077 - AluJo SINE Alu -6 306 1 200 244 22 0 chr9 2270375 2270420 -140001024 - MER5A DNA MER1_type -79 110 65 611 111 202 0 chr9 2270965 2271064 -140000380 + AluJb SINE Alu 182 300 -12 243 225 56 28 chr9 2271070 2271141 -140000303 + MER5A DNA MER1_type 117 189 0 1384 160 36 4 chr9 2272335 2272560 -139998884 - MER46A DNA MER2_type 0 236 5 321 276 43 9 chr9 2272766 2272882 -139998562 - MIR SINE MIR -48 214 95 800 219 48 28 chr9 2272905 2272979 -139998465 - L1MB4 LINE L1 -23 6157 6086 1487 122 5 0 chr9 2272979 2273184 -139998260 + AluSx SINE Alu 1 206 -106 800 219 48 28 chr9 2273184 2273396 -139998048 - L1MB4 LINE L1 -94 6086 5950 2701 23 0 0 chr9 2273706 2274005 -139997439 + AluY SINE Alu 3 301 -10 1858 130 38 17 chr9 2274103 2274395 -139997049 - AluJb SINE Alu -14 298 1 327 49 0 0 chr9 2274427 2274468 -139996976 + (CA)n Simple_repeat Simple_repeat 2 42 0 308 267 10 20 chr9 2274949 2275050 -139996394 + MIR SINE MIR 150 249 -13 370 237 51 70 chr9 2275141 2275171 -139996273 - MIR SINE MIR -102 160 131 333 0 0 0 chr9 2275171 2275208 -139996236 + (TG)n Simple_repeat Simple_repeat 2 38 0 370 237 51 70 chr9 2275208 2275333 -139996111 - MIR SINE MIR -131 131 8 2143 132 0 0 chr9 2275886 2276181 -139995263 + AluSx SINE Alu 1 295 -17 2381 164 10 10 chr9 2277794 2278183 -139993261 + MLT1B LTR MaLR 1 389 -1 2219 125 3 0 chr9 2279250 2279554 -139991890 + AluSp SINE Alu 1 305 -8 1753 246 87 24 chr9 2279579 2280120 -139991324 - MER90 LTR ERV1 0 575 1 213 167 42 0 chr9 2281137 2281185 -139990259 + CT-rich Low_complexity Low_complexity 3 52 0 180 77 0 0 chr9 2281430 2281456 -139989988 + (T)n Simple_repeat Simple_repeat 1 26 0 2086 121 20 0 chr9 2282457 2282755 -139988689 + AluSx SINE Alu 1 304 -8 327 203 0 0 chr9 2282755 2282824 -139988620 + (TA)n Simple_repeat Simple_repeat 2 70 0 276 30 0 0 chr9 2282824 2282857 -139988587 + (CA)n Simple_repeat Simple_repeat 2 34 0 492 260 0 0 chr9 2282965 2283065 -139988379 - MER58B DNA MER1_type 0 341 242 472 153 0 14 chr9 2283111 2283183 -139988261 + AluSg/x SINE Alu 86 156 -154 532 160 180 82 chr9 2283194 2283388 -139988056 - MER58B DNA MER1_type -128 213 1 315 313 53 33 chr9 2283421 2283571 -139987873 - L1MC4a LINE L1 -1845 5963 5811 915 197 0 38 chr9 2283643 2283826 -139987618 - AluJb SINE Alu -3 309 134 1969 130 3 10 chr9 2283826 2284127 -139987317 - AluSx SINE Alu -13 299 1 274 351 0 0 chr9 2284129 2284243 -139987201 - L1MC4a LINE L1 -379 5742 5629 336 278 41 0 chr9 2284899 2284996 -139986448 + MIR3 SINE MIR 96 196 -12 238 292 29 109 chr9 2285020 2285107 -139986337 + L2 LINE L2 3146 3220 -52 1638 169 14 27 chr9 2285107 2285402 -139986042 + AluJo SINE Alu 1 291 -21 238 292 29 109 chr9 2285402 2285451 -139985993 + L2 LINE L2 3220 3271 -1 722 285 94 84 chr9 2285500 2286083 -139985361 + MLT1L LTR MaLR 19 607 -8 2388 83 0 0 chr9 2287052 2287354 -139984090 + AluY SINE Alu 1 302 -9 302 291 127 63 chr9 2287821 2287979 -139983465 + MIR SINE MIR 20 187 -75 563 323 96 27 chr9 2288004 2288084 -139983360 - L2 LINE L2 0 3272 3199 1973 159 0 3 chr9 2288084 2288386 -139983058 + AluSx SINE Alu 1 301 -11 563 323 96 27 chr9 2288386 2288711 -139982733 - L2 LINE L2 -73 3199 2839 2446 89 0 0 chr9 2288733 2289035 -139982409 + AluSc SINE Alu 1 302 -7 183 330 8 93 chr9 2289047 2289165 -139982279 - MIR SINE MIR -126 136 29 298 263 61 35 chr9 2291192 2291306 -139980138 + L2 LINE L2 3197 3313 0 2697 145 20 57 chr9 2291523 2292068 -139979376 + L1MB4 LINE L1 5655 6179 -1 506 338 32 18 chr9 2292160 2292379 -139979065 + MIR SINE MIR 29 250 -12 2815 110 0 3 chr9 2292495 2292860 -139978584 - THE1B LTR MaLR 0 364 1 503 231 59 117 chr9 2293201 2293673 -139977771 - HAL1 LINE L1 -32 2475 2031 2313 250 80 57 chr9 2293678 2294792 -139976652 - HAL1 LINE L1 -838 1669 530 313 298 43 27 chr9 2294942 2295130 -139976314 + L1ME4a LINE L1 5725 5915 -206 2267 108 3 0 chr9 2295576 2295873 -139975571 - AluY SINE Alu -13 298 1 509 317 54 32 chr9 2295881 2296253 -139975191 - L1M4 LINE L1 -2055 4091 3712 3797 152 17 2 chr9 2296355 2296934 -139974510 - L1PA15 LINE L1 0 6165 5578 977 233 49 0 chr9 2296962 2297207 -139974237 + L1M4 LINE L1 2476 2732 -3414 3224 245 33 16 chr9 2297210 2298129 -139973315 - L1M4 LINE L1 -1694 4452 3519 2211 107 3 7 chr9 2298644 2298944 -139972500 + AluSg SINE Alu 1 299 -11 437 341 29 39 chr9 2299625 2299830 -139971614 - MIR SINE MIR -58 204 2 2312 109 69 29 chr9 2300801 2301151 -139970293 - THE1B LTR MaLR 0 364 1 11275 102 2 81 chr9 2301151 2302865 -139968579 - THE1B-int LTR MaLR 0 1580 1 2380 125 43 14 chr9 2302867 2303219 -139968225 - THE1B LTR MaLR -2 362 1 375 247 58 39 chr9 2303808 2303962 -139967482 - L2 LINE L2 -202 3070 2914 221 114 45 0 chr9 2305433 2305477 -139965967 + T-rich Low_complexity Low_complexity 2 47 0 207 265 20 0 chr9 2305646 2305695 -139965749 + L3 LINE CR1 1526 1575 -2 905 289 141 18 chr9 2306307 2306977 -139964467 + L2 LINE L2 2563 3308 -5 180 0 0 0 chr9 2307880 2307900 -139963544 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 187 297 164 16 chr9 2307937 2308065 -139963379 - MIR SINE MIR -50 212 66 236 273 141 41 chr9 2309648 2309769 -139961675 + MIR SINE MIR 112 244 -18 289 289 193 15 chr9 2310134 2310269 -139961175 - MIR SINE MIR -22 240 82 252 0 0 0 chr9 2311884 2311912 -139959532 + (T)n Simple_repeat Simple_repeat 1 28 0 1027 84 30 0 chr9 2312412 2312543 -139958901 - AluJb SINE Alu -177 135 1 934 192 34 0 chr9 2313709 2313886 -139957558 - MER5A DNA MER1_type 0 189 7 213 290 68 91 chr9 2318911 2319012 -139952432 - L2 LINE L2 -554 2760 2663 1750 165 42 93 chr9 2319012 2319177 -139952267 + MLT1B LTR MaLR 1 173 -217 2136 117 0 0 chr9 2319177 2319468 -139951976 + AluSx SINE Alu 15 305 -7 1750 165 42 93 chr9 2319468 2319709 -139951735 + MLT1B LTR MaLR 173 386 -4 213 290 68 91 chr9 2319709 2319783 -139951661 - L2 LINE L2 -651 2663 2589 2475 65 6 37 chr9 2324386 2324709 -139946735 + AluSq SINE Alu 1 313 0 1757 188 36 36 chr9 2329401 2329762 -139941682 + MLT1A1 LTR MaLR 1 361 -4 524 221 44 0 chr9 2330111 2330224 -139941220 + MER94 DNA DNA 1 118 -16 189 0 0 0 chr9 2330865 2330886 -139940558 + (ATTG)n Simple_repeat Simple_repeat 2 22 0 2455 71 0 7 chr9 2330886 2331195 -139940249 - AluY SINE Alu -4 307 1 757 304 24 0 chr9 2333571 2333778 -139937666 + MLT1J LTR MaLR 70 281 -230 333 0 0 0 chr9 2335766 2335803 -139935641 + (CA)n Simple_repeat Simple_repeat 1 37 0 189 0 0 0 chr9 2335802 2335823 -139935621 + (TC)n Simple_repeat Simple_repeat 1 21 0 * 4601 157 29 8 chr9 2336993 2338106 -139933338 - L1MA4A LINE L1 -6 6150 5062 2120 133 10 0 chr9 2338761 2339070 -139932374 + AluSq SINE Alu 1 312 -1 529 272 108 15 chr9 2339233 2339428 -139932016 - MIR SINE MIR -35 227 15 787 181 29 103 chr9 2339634 2339838 -139931606 - MER5A DNA MER1_type 0 189 1 2308 87 0 7 chr9 2340972 2341272 -139930172 - AluSg SINE Alu -12 298 1 273 339 111 35 chr9 2341686 2341857 -139929587 + L2 LINE L2 3082 3265 -7 2207 134 61 9 chr9 2342405 2342748 -139928696 + MER46B DNA MER2_type 1 236 0 198 355 16 0 chr9 2343825 2343887 -139927557 - L3 LINE CR1 -1460 117 55 225 0 0 0 chr9 2346677 2346702 -139924742 + (CCG)n Simple_repeat Simple_repeat 1 25 0 307 286 24 0 chr9 2346739 2346823 -139924621 + G-rich Low_complexity Low_complexity 2 87 0 205 122 0 41 chr9 2346935 2346984 -139924460 + (GGGGA)n Simple_repeat Simple_repeat 5 51 0 23 33 0 0 chr9 2347103 2347133 -139924311 + GC_rich Low_complexity Low_complexity 1 30 0 251 366 24 0 chr9 2349098 2349180 -139922264 + MIR SINE MIR 65 148 -60 194 336 181 0 chr9 2349491 2349607 -139921837 - L2 LINE L2 0 3272 3136 708 265 45 9 chr9 2349782 2350005 -139921439 + MLT1I LTR MaLR 39 269 -140 791 255 82 0 chr9 2350079 2350263 -139921181 + MER58C DNA MER1_type 2 200 -15 351 193 121 12 chr9 2350304 2350387 -139921057 + MLT1I LTR MaLR 318 409 0 1610 161 23 33 chr9 2350771 2351076 -139920368 + AluJb SINE Alu 1 302 -10 342 339 3 7 chr9 2351214 2351348 -139920096 - MER5A DNA MER1_type -43 146 1 1123 159 74 0 chr9 2351774 2351950 -139919494 - MER5A DNA MER1_type 0 189 1 454 342 79 33 chr9 2352002 2352394 -139919050 + MLT1K LTR MaLR 162 571 -17 920 232 32 41 chr9 2352763 2352983 -139918461 + MER20B DNA MER1_type 2 219 0 845 249 92 9 chr9 2354201 2354418 -139917026 + MIR SINE MIR 2 236 -26 565 247 45 32 chr9 2354486 2354640 -139916804 + MER5B DNA MER1_type 3 158 -20 2405 97 3 0 chr9 2355499 2355809 -139915635 + AluSx SINE Alu 1 311 -1 5246 139 19 1 chr9 2356695 2357493 -139913951 + L1MA4A LINE L1 5486 6297 -6 1445 161 24 69 chr9 2358749 2359084 -139912360 - L1MA7 LINE L1 -2 6289 5970 2209 93 0 42 chr9 2359089 2359401 -139912043 - AluSx SINE Alu -13 299 1 367 303 8 8 chr9 2361324 2361443 -139910001 + MIR SINE MIR 32 150 -112 1564 233 81 40 chr9 2362026 2362558 -139908886 - MER20B DNA MER1_type -1 782 229 1289 172 19 34 chr9 2362612 2362880 -139908564 - AluJo SINE Alu -7 305 42 415 225 78 56 chr9 2362884 2363026 -139908418 - MER20B DNA MER1_type -608 175 31 473 294 73 14 chr9 2363417 2363547 -139907897 + MIR SINE MIR 18 168 -94 1572 213 96 0 chr9 2363547 2363880 -139907564 - MLT1A1 LTR MaLR 0 365 1 473 294 73 14 chr9 2363880 2363967 -139907477 + MIR SINE MIR 168 248 -14 5065 105 1 7 chr9 2364029 2364716 -139906728 - L1PA13 LINE L1 -13 6150 5468 280 295 18 18 chr9 2366198 2366310 -139905134 - L1ME4a LINE L1 -48 6073 5962 836 193 0 0 chr9 2366351 2366491 -139904953 + FRAM SINE Alu 1 140 -36 2192 106 0 3 chr9 2367124 2367416 -139904028 - AluSx SINE Alu -21 291 1 189 154 51 0 chr9 2367585 2367624 -139903820 + L2 LINE L2 184 224 -3090 300 234 0 64 chr9 2368823 2368917 -139902527 + CT-rich Low_complexity Low_complexity 1 88 0 306 125 0 0 chr9 2370054 2370102 -139901342 + (TCC)n Simple_repeat Simple_repeat 1 48 0 1923 173 3 0 chr9 2370102 2370408 -139901036 - AluJb SINE Alu -5 307 1 316 274 121 40 chr9 2371083 2371245 -139900199 + MIR SINE MIR 16 179 -56 209 312 184 32 chr9 2371354 2371572 -139899872 + MIR SINE MIR 11 261 -1 28 0 0 0 chr9 2373103 2373131 -139898313 + AT_rich Low_complexity Low_complexity 1 28 0 260 235 176 15 chr9 2373349 2373553 -139897891 - L1ME4a LINE L1 -4 6117 5881 235 332 161 10 chr9 2373699 2373868 -139897576 - L1ME4a LINE L1 -452 5669 5466 507 253 11 79 chr9 2373868 2374058 -139897386 + MER5B DNA MER1_type 1 177 -1 235 332 161 10 chr9 2374058 2374081 -139897363 - L1ME4a LINE L1 -655 5466 5448 470 305 78 38 chr9 2374902 2375272 -139896172 + MLT1J LTR MaLR 108 492 -19 2036 171 28 104 chr9 2375516 2375979 -139895465 + MSTB1 LTR MaLR 1 428 -4 9590 173 40 7 chr9 2375983 2377581 -139893863 + MSTB-int LTR MaLR 1 1651 0 2286 188 39 12 chr9 2377581 2377996 -139893448 + MSTB LTR MaLR 1 426 0 2236 153 5 16 chr9 2379184 2379556 -139891888 - L1PB1 LINE L1 -2 6149 5782 463 174 23 0 chr9 2379556 2379642 -139891802 + L1PB1 LINE L1 5777 5864 -287 305 151 0 0 chr9 2379655 2379708 -139891736 - L1PB1 LINE L1 -595 5556 5504 556 143 0 17 chr9 2379708 2379827 -139891617 + (TA)n Simple_repeat Simple_repeat 1 117 0 15366 193 27 7 chr9 2379827 2382452 -139888992 - L1P5 LINE L1 -360 6507 3936 207 0 0 0 chr9 2382452 2382475 -139888969 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 15366 193 27 7 chr9 2382475 2385443 -139886001 - L1P5 LINE L1 -2931 3936 653 259 184 126 23 chr9 2385584 2385671 -139885773 + MLT1A2 LTR MaLR 1 96 -278 402 21 0 0 chr9 2386014 2386061 -139885383 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 356 250 156 19 chr9 2387303 2387463 -139883981 - L1ME3A LINE L1 0 6170 5989 370 278 42 75 chr9 2387523 2387567 -139883877 - L1MEc LINE L1 -4869 1393 1349 3098 80 22 59 chr9 2387567 2388028 -139883416 - MLT2A1 LTR ERVL 0 444 1 370 278 42 75 chr9 2388028 2388518 -139882926 - L1MEc LINE L1 -4913 1349 928 2440 69 0 0 chr9 2388470 2388830 -139882614 - AluY SINE Alu -5 306 1 342 184 51 20 chr9 2389111 2389209 -139882235 - L1MC5 LINE L1 -30 7931 7831 389 351 121 4 chr9 2389221 2389469 -139881975 - L1MEc LINE L1 -5292 827 551 762 282 194 5 chr9 2390050 2390462 -139880982 + LTR33A LTR ERVL 5 494 -29 429 301 21 43 chr9 2391527 2391713 -139879731 + MIR SINE MIR 11 192 -70 1456 204 29 50 chr9 2393092 2393474 -139877970 - MLT1A2 LTR MaLR 0 374 1 635 178 0 75 chr9 2393556 2393702 -139877742 - AluJo/FRAM SINE Alu -3 309 175 317 183 56 14 chr9 2393702 2393773 -139877671 - Alu SINE Alu -251 52 2 507 279 161 43 chr9 2394229 2394576 -139876868 + L2 LINE L2 2924 3311 -2 224 266 164 31 chr9 2394588 2394716 -139876728 - MIR SINE MIR -66 196 52 2242 120 0 7 chr9 2394982 2395281 -139876163 - AluSx SINE Alu -15 297 1 2094 131 108 10 chr9 2396264 2396652 -139874792 + MSTB LTR MaLR 1 426 0 1879 199 14 0 chr9 2396913 2397284 -139874160 + MLT1B LTR MaLR 15 390 0 264 276 0 0 chr9 2397483 2397541 -139873903 - L2 LINE L2 -2 3270 3213 381 22 0 0 chr9 2398309 2398355 -139873089 - MLT2C1 LTR ERVL 0 515 470 1158 122 0 0 chr9 2398356 2398536 -139872908 + (TA)n Simple_repeat Simple_repeat 1 180 0 374 258 0 43 chr9 2398546 2398732 -139872712 + (CATATA)n Simple_repeat Simple_repeat 3 180 0 405 0 0 0 chr9 2398733 2398778 -139872666 + (TG)n Simple_repeat Simple_repeat 1 45 0 1665 193 15 9 chr9 2398816 2399153 -139872291 - MLT2C1 LTR ERVL -58 339 1 405 309 11 56 chr9 2399245 2399423 -139872021 - L3 LINE CR1 -112 1465 1296 229 135 0 0 chr9 2399523 2399560 -139871884 - MER103 DNA DNA -1 165 129 939 249 111 47 chr9 2399748 2400153 -139871291 - MLT1H LTR MaLR 0 549 119 242 313 117 31 chr9 2400263 2400426 -139871018 - MER5B DNA MER1_type -1 177 1 1677 165 47 52 chr9 2401139 2401521 -139869923 - MLT1B LTR MaLR -10 380 1 854 236 64 40 chr9 2402054 2402086 -139869358 + MIR SINE MIR 7 37 -225 1107 202 52 0 chr9 2402086 2402299 -139869145 + MER58A DNA MER1_type 1 224 0 854 236 64 40 chr9 2402299 2402516 -139868928 + MIR SINE MIR 37 262 0 1764 167 20 0 chr9 2403410 2403703 -139867741 + AluJo SINE Alu 1 299 -13 3038 81 26 2 chr9 2403884 2404305 -139867139 + MLT2A2 LTR ERVL 23 453 0 5250 141 47 1 chr9 2404349 2405314 -139866130 - L1MC1 LINE L1 -1 6612 5604 2240 105 10 0 chr9 2405314 2405610 -139865834 - AluSp SINE Alu -14 299 1 4288 111 28 7 chr9 2405628 2406315 -139865129 - L1MA3 LINE L1 0 6305 5605 210 71 0 0 chr9 2406315 2406343 -139865101 + (TTTAA)n Simple_repeat Simple_repeat 3 30 0 998 148 0 0 chr9 2406344 2406506 -139864938 - L1PA15 LINE L1 -31 6134 5973 19445 134 29 10 chr9 2406515 2409743 -139861701 - L1M1 LINE L1 -4262 3303 14 1309 229 61 11 chr9 2409748 2410108 -139861336 - L1MC1 LINE L1 -823 5603 5216 201 39 0 0 chr9 2410108 2410134 -139861310 + (TTTTG)n Simple_repeat Simple_repeat 1 26 0 1309 229 61 11 chr9 2410134 2410213 -139861231 - L1MC1 LINE L1 -1210 5216 5142 * 1603 267 6 0 chr9 2410212 2410702 -139860742 - L1MC1 LINE L1 -3420 3006 2514 2521 179 53 2 chr9 2410702 2411287 -139860157 + L1PBa LINE L1 1758 2372 -4491 5964 92 14 22 chr9 2411287 2412208 -139859236 - L1PA12 LINE L1 -4 6164 5236 4272 76 43 3 chr9 2412208 2412790 -139858654 + LTR14B LTR ERVK 4 608 0 5964 92 14 22 chr9 2412790 2413399 -139858045 - L1PA12 LINE L1 -932 5236 4638 2200 132 0 0 chr9 2413399 2413695 -139857749 + AluSx SINE Alu 1 296 -16 5964 92 14 22 chr9 2413695 2413947 -139857497 - L1PA12 LINE L1 -1530 4638 4385 559 239 22 0 chr9 2413948 2414082 -139857362 - L1MC1 LINE L1 -6284 142 6 447 246 44 11 chr9 2414509 2414692 -139856752 - L1ME4a LINE L1 -2 6119 5931 378 323 62 0 chr9 2414716 2414877 -139856567 - MIR SINE MIR -2 260 90 21 71 0 0 chr9 2414938 2414980 -139856464 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr9 2415057 2415078 -139856366 + AT_rich Low_complexity Low_complexity 1 21 0 2447 63 0 3 chr9 2415724 2416025 -139855419 - AluY SINE Alu -11 300 1 338 216 129 52 chr9 2416292 2416408 -139855036 - MIR3 SINE MIR -6 202 78 1565 268 26 35 chr9 2416640 2417210 -139854234 - L1MD3 LINE L1 -18 7977 7413 476 202 0 23 chr9 2417212 2417341 -139854103 + L1MD3 LINE L1 6938 7063 -932 3145 207 32 2 chr9 2417348 2417975 -139853469 + MER82 DNA MER2_type 8 653 0 725 214 61 31 chr9 2417980 2418209 -139853235 + L1MC4a LINE L1 7015 7250 -558 24 0 0 0 chr9 2418342 2418366 -139853078 + AT_rich Low_complexity Low_complexity 1 24 0 333 282 137 8 chr9 2418575 2418706 -139852738 + L2 LINE L2 3122 3269 -3 813 262 187 18 chr9 2419133 2419518 -139851926 - MLT1J2 LTR MaLR 0 450 1 226 301 70 24 chr9 2420211 2420424 -139851020 - L1ME4a LINE L1 -4 6117 5895 599 208 214 0 chr9 2420644 2420812 -139850632 + MIR SINE MIR 58 261 -1 952 173 9 61 chr9 2420866 2421097 -139850347 + MER20 DNA MER1_type 1 219 0 706 216 29 39 chr9 2421325 2421533 -139849911 - MER106A DNA MER1_type -2 234 29 205 347 95 11 chr9 2422494 2422589 -139848855 + L2 LINE L2 3161 3263 -9 1554 201 7 26 chr9 2423777 2424080 -139847364 - AluJb SINE Alu -15 297 1 464 295 70 8 chr9 2424300 2424429 -139847015 + L2 LINE L2 3136 3272 0 5846 83 30 52 chr9 2425024 2426637 -139844807 + L1PA10 LINE L1 4558 6152 -16 2242 117 0 13 chr9 2427304 2427621 -139843823 + AluSq SINE Alu 1 313 0 22 0 0 0 chr9 2428381 2428403 -139843041 + AT_rich Low_complexity Low_complexity 1 22 0 189 0 0 0 chr9 2429249 2429270 -139842174 + (T)n Simple_repeat Simple_repeat 1 21 0 29 0 0 0 chr9 2429886 2429915 -139841529 + AT_rich Low_complexity Low_complexity 1 29 0 215 274 0 0 chr9 2430192 2430243 -139841201 + G-rich Low_complexity Low_complexity 6 56 0 340 263 53 45 chr9 2431139 2431272 -139840172 - MIR SINE MIR -18 244 111 580 261 141 5 chr9 2432109 2432308 -139839136 + MIR SINE MIR 29 254 -8 823 243 79 69 chr9 2433817 2434224 -139837220 + HsTC2a DNA Tc2 94 504 -240 455 156 22 11 chr9 2434225 2434315 -139837129 + HsTC2a DNA Tc2 651 741 -1 250 292 83 0 chr9 2434931 2435051 -139836393 - L3b LINE CR1 -351 1232 1103 258 225 56 11 chr9 2435063 2435152 -139836292 - MER94 DNA DNA -9 125 33 863 274 155 44 chr9 2435190 2435602 -139835842 - L3 LINE CR1 -492 1085 615 2203 92 0 3 chr9 2435602 2435924 -139835520 + AluSg SINE Alu 1 321 0 863 274 155 44 chr9 2435924 2435967 -139835477 - L3 LINE CR1 -962 615 578 1144 199 85 99 chr9 2435969 2436462 -139834982 - LTR29 LTR ERV1 0 622 137 276 283 23 48 chr9 2436437 2436584 -139834860 - MER34 LTR ERV1 -409 133 1 * 182 329 25 63 chr9 2436605 2436763 -139834681 - L3 LINE CR1 -1055 522 371 180 143 0 122 chr9 2436844 2436893 -139834551 + L2 LINE L2 3261 3303 -10 2182 111 20 3 chr9 2438061 2438359 -139833085 + AluSx SINE Alu 1 303 -9 603 293 102 5 chr9 2438364 2438569 -139832875 + MIR SINE MIR 28 252 -10 547 281 207 5 chr9 2438766 2438969 -139832475 + MIR SINE MIR 2 245 -17 396 312 28 7 chr9 2439232 2439373 -139832071 - MER117 DNA MER1_type -53 144 1 2234 116 0 13 chr9 2439469 2439780 -139831664 - AluSx SINE Alu -5 307 1 1944 130 14 0 chr9 2440170 2440455 -139830989 - AluSq SINE Alu -7 306 18 665 302 33 13 chr9 2440606 2440915 -139830529 + L1ME LINE L1 5316 5558 -604 2822 82 3 72 chr9 2440946 2441337 -139830107 - THE1B LTR MaLR 0 364 1 523 220 20 0 chr9 2441376 2441476 -139829968 - MER94 DNA DNA 0 134 33 25 0 0 0 chr9 2441888 2441913 -139829531 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr9 2441965 2441989 -139829455 + AT_rich Low_complexity Low_complexity 1 24 0 240 86 0 0 chr9 2442847 2442882 -139828562 + (TG)n Simple_repeat Simple_repeat 1 35 0 264 59 0 0 chr9 2442882 2442916 -139828528 + (GA)n Simple_repeat Simple_repeat 2 35 0 902 180 33 27 chr9 2443086 2443260 -139828184 + MLT1H LTR MaLR 1 175 -374 3462 138 66 22 chr9 2443260 2443849 -139827595 - MER41B LTR ERV1 0 635 21 245 91 0 0 chr9 2443846 2443879 -139827565 - MER41A LTR ERV1 -496 58 26 * 590 235 103 135 chr9 2443887 2444236 -139827208 + MLT1H LTR MaLR 173 510 -39 827 133 103 42 chr9 2445333 2445498 -139825946 + L1PA16 LINE L1 5992 6166 0 21 57 0 0 chr9 2445607 2445642 -139825802 + AT_rich Low_complexity Low_complexity 1 35 0 216 299 219 12 chr9 2445773 2445937 -139825507 + MIR SINE MIR 59 256 -6 348 217 29 0 chr9 2446813 2446882 -139824562 - MER5B DNA MER1_type 0 178 108 12394 118 32 81 chr9 2446886 2453214 -139818230 + L1PA8 LINE L1 12 6172 0 371 197 21 3 chr9 2453214 2453302 -139818142 + L1M4 LINE L1 4657 4751 -1395 393 22 0 0 chr9 2453304 2453349 -139818095 - LTR7 LTR ERV1 -405 45 1 3529 107 6 28 chr9 2453349 2453882 -139817562 - HERVH LTR ERV1 0 7713 7193 3118 234 4 4 chr9 2453871 2454572 -139816872 - HERVH LTR ERV1 -2699 5014 4314 * 17139 185 21 36 chr9 2454636 2458728 -139812716 - HERVH LTR ERV1 -2297 4232 1 2083 162 60 21 chr9 2458728 2459161 -139812283 - LTR7 LTR ERV1 0 450 1 9999 147 57 82 chr9 2459215 2460719 -139810725 + L1MC3 LINE L1 5653 7194 -591 277 294 11 22 chr9 2460719 2460811 -139810633 + MLT1F1 LTR MaLR 35 125 -442 9999 147 57 82 chr9 2460811 2461383 -139810061 + L1MC3 LINE L1 7194 7766 -19 2697 20 0 0 chr9 2461383 2461683 -139809761 - AluY SINE Alu -11 300 1 9999 147 57 82 chr9 2461683 2461703 -139809741 + L1MC3 LINE L1 7766 7785 0 505 233 15 3 chr9 2461707 2461826 -139809618 - MER5B DNA MER1_type -57 126 12 255 240 10 80 chr9 2462755 2462855 -139808589 - L2 LINE L2 0 3313 3221 1185 202 5 14 chr9 2462934 2463152 -139808292 + MER20 DNA MER1_type 1 216 -3 1079 181 62 0 chr9 2463654 2463847 -139807597 - MER3 DNA MER1_type -4 205 1 2393 249 34 39 chr9 2465836 2466562 -139804882 + MER21B LTR ERV1 13 735 -128 2573 94 71 0 chr9 2466572 2466922 -139804522 + MER51B LTR ERV1 3 377 0 228 236 55 18 chr9 2466959 2467014 -139804430 - L2 LINE L2 -60 3212 3156 513 287 123 20 chr9 2467051 2467246 -139804198 + LTR33 LTR ERVL 1 215 -306 305 246 106 65 chr9 2467311 2467510 -139803934 + LTR33 LTR ERVL 315 521 0 391 319 60 44 chr9 2468446 2468545 -139802899 - MIR3 SINE MIR -21 187 82 2284 140 10 75 chr9 2468545 2468960 -139802484 - MLT1B LTR MaLR 0 390 3 391 319 60 44 chr9 2468960 2469042 -139802402 - MIR3 SINE MIR -126 82 3 199 306 32 0 chr9 2469829 2469891 -139801553 - MIR SINE MIR -63 145 82 545 291 14 0 chr9 2470180 2470328 -139801116 - MER103 DNA DNA -7 159 10 1082 252 70 83 chr9 2471355 2471954 -139799490 + MLT1L LTR MaLR 21 611 -4 627 322 153 8 chr9 2472185 2472539 -139798905 - L2 LINE L2 -8 3305 2901 250 297 168 0 chr9 2473444 2473545 -139797899 - MIR3 SINE MIR -4 204 87 374 243 168 34 chr9 2473671 2473846 -139797598 - MIR SINE MIR -30 232 31 482 314 168 9 chr9 2474155 2474375 -139797069 + MIR SINE MIR 2 256 -6 2267 97 3 3 chr9 2474527 2474825 -139796619 - AluSp SINE Alu -15 298 1 463 278 133 17 chr9 2476081 2476322 -139795122 - L1ME3 LINE L1 -215 5947 5679 2127 124 0 0 chr9 2476495 2476825 -139794619 - AluSx SINE Alu 0 330 1 1590 170 0 56 chr9 2476831 2477137 -139794307 - AluJb SINE Alu -17 295 7 371 187 131 9 chr9 2477318 2477425 -139794019 - L1MEd LINE L1 -5998 121 2 209 315 46 39 chr9 2478517 2478647 -139792797 + L2 LINE L2 2716 2846 -468 243 0 0 0 chr9 2478704 2478731 -139792713 + (A)n Simple_repeat Simple_repeat 1 27 0 358 256 183 0 chr9 2479273 2479410 -139792034 + MIR SINE MIR 57 218 -44 205 319 109 34 chr9 2479538 2479657 -139791787 - L2 LINE L2 -9 3263 3136 848 215 17 52 chr9 2479684 2479917 -139791527 + MER33 DNA MER1_type 1 225 -99 1045 61 0 0 chr9 2479917 2480048 -139791396 + AluY SINE Alu 181 311 0 252 0 0 0 chr9 2480052 2480080 -139791364 + (TA)n Simple_repeat Simple_repeat 2 29 0 408 112 45 34 chr9 2480087 2480176 -139791268 + MER33 DNA MER1_type 220 309 -15 1837 130 22 7 chr9 2480181 2480458 -139790986 - AluSq SINE Alu -19 294 14 264 300 148 51 chr9 2480522 2480779 -139790665 - L2 LINE L2 -167 3105 2824 225 158 329 13 chr9 2481452 2481528 -139789916 + MER5A DNA MER1_type 59 158 -31 * 445 212 30 10 chr9 2481462 2481561 -139789883 - MER5A DNA MER1_type -80 109 9 * 653 319 152 27 chr9 2481554 2482194 -139789250 - L3 LINE CR1 -16 1561 842 726 288 83 47 chr9 2482373 2482845 -139788599 - L1ME4a LINE L1 -280 5841 5353 2709 100 3 11 chr9 2483041 2483422 -139788022 - L1MA2 LINE L1 0 6304 5927 302 91 121 76 chr9 2483516 2483582 -139787862 + MADE1 DNA Mariner 12 80 0 461 281 39 54 chr9 2483647 2483661 -139787783 - L1ME4a LINE L1 -1968 4178 4165 2281 95 0 10 chr9 2483661 2483966 -139787478 - AluY SINE Alu -9 302 1 461 281 39 54 chr9 2483966 2484268 -139787176 - L1ME4a LINE L1 -1981 4165 3869 839 248 8 33 chr9 2484359 2484601 -139786843 + L1MB7 LINE L1 5948 6183 -1 1416 246 38 32 chr9 2484603 2485628 -139785816 - L1MC4 LINE L1 -384 7658 6462 21 36 0 0 chr9 2486841 2486869 -139784575 + AT_rich Low_complexity Low_complexity 1 28 0 343 316 0 10 chr9 2487364 2487462 -139783982 - L2 LINE L2 0 3313 3217 763 226 97 11 chr9 2487463 2487649 -139783795 + MER63A DNA MER1_type 9 210 0 208 283 0 0 chr9 2487649 2487695 -139783749 - L2 LINE L2 -93 3179 3134 1104 329 70 23 chr9 2487792 2488616 -139782828 - L2 LINE L2 -203 3069 2204 252 294 0 0 chr9 2488821 2488889 -139782555 + MIR SINE MIR 183 250 -12 338 157 12 0 chr9 2488891 2488974 -139782470 + CT-rich Low_complexity Low_complexity 2 85 0 222 125 25 0 chr9 2489087 2489127 -139782317 + (TG)n Simple_repeat Simple_repeat 1 41 0 1656 249 98 52 chr9 2489534 2489873 -139781571 - MLT1G1 LTR MaLR -15 580 258 1832 146 27 7 chr9 2489873 2490174 -139781270 - AluSx SINE Alu -5 307 1 790 282 28 5 chr9 2490089 2490180 -139781264 - AluJo SINE Alu -92 220 3 * 682 246 0 0 chr9 2490180 2490302 -139781142 - FLAM_A SINE Alu -10 123 2 1656 249 98 52 chr9 2490302 2490508 -139780936 - MLT1G1 LTR MaLR -341 254 3 2537 53 3 0 chr9 2491914 2492218 -139779226 + AluYa5 SINE Alu 2 306 -5 31 68 0 0 chr9 2492617 2492676 -139778768 + AT_rich Low_complexity Low_complexity 1 59 0 237 276 150 0 chr9 2493046 2493173 -139778271 + MER117 DNA MER1_type 51 196 -1 372 270 63 9 chr9 2494717 2494828 -139776616 + MIR SINE MIR 8 124 -138 385 273 113 92 chr9 2494833 2495126 -139776318 - L2 LINE L2 0 3272 2974 245 281 177 0 chr9 2495123 2495219 -139776225 + MIR SINE MIR 115 227 -35 * 1317 278 55 26 chr9 2495503 2495957 -139775487 + LTR16C LTR ERVL 1 467 -24 970 294 71 34 chr9 2495967 2496474 -139774970 + LTR67 LTR ERVL 23 548 -9 601 270 82 0 chr9 2496480 2496713 -139774731 - LTR33A LTR ERVL 0 523 272 204 315 121 60 chr9 2496775 2496924 -139774520 - L2 LINE L2 -1141 2173 2016 3057 161 21 3 chr9 2497468 2498047 -139773397 - L1MA8 LINE L1 -22 6269 5681 320 327 69 25 chr9 2498052 2498211 -139773233 + MIR SINE MIR 20 185 -77 186 43 0 0 chr9 2498324 2498347 -139773097 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 21 0 0 0 chr9 2499400 2499421 -139772023 + AT_rich Low_complexity Low_complexity 1 21 0 396 255 102 10 chr9 2499916 2500112 -139771332 - HAL1 LINE L1 -296 2211 1998 749 243 78 19 chr9 2500138 2500344 -139771100 - MIR SINE MIR -31 231 14 615 265 90 13 chr9 2500460 2500694 -139770750 - HAL1 LINE L1 -636 1871 1620 1155 248 110 63 chr9 2500713 2501486 -139769958 - HAL1 LINE L1 -1009 1498 690 349 391 14 0 chr9 2502408 2502546 -139768898 - MIR SINE MIR -98 164 25 435 309 33 48 chr9 2502723 2502933 -139768511 + L1MEd LINE L1 122 328 -5791 741 182 0 0 chr9 2503063 2503184 -139768260 + AluJo/FLAM SINE Alu 1 121 -191 1431 186 11 22 chr9 2503184 2503453 -139767991 + AluJo SINE Alu 27 292 -20 932 279 36 68 chr9 2503464 2504203 -139767241 + L1MEd LINE L1 494 1209 -4910 427 292 64 68 chr9 2504219 2504438 -139767006 + HAL1 LINE L1 1301 1518 -989 231 279 31 54 chr9 2505074 2505203 -139766241 + L1ME LINE L1 5610 5735 -386 417 281 136 28 chr9 2505389 2505685 -139765759 + L1ME4a LINE L1 5335 5689 -432 201 74 0 0 chr9 2505685 2505712 -139765732 + (TG)n Simple_repeat Simple_repeat 2 28 0 417 281 136 28 chr9 2505712 2505839 -139765605 + L1ME4a LINE L1 5689 5801 -320 30 59 0 0 chr9 2505869 2505920 -139765524 + AT_rich Low_complexity Low_complexity 1 51 0 243 225 78 47 chr9 2505946 2506075 -139765369 + L1ME4a LINE L1 5977 6109 -12 218 175 0 18 chr9 2506189 2506246 -139765198 + GA-rich Low_complexity Low_complexity 2 57 0 24 77 0 0 chr9 2506353 2506405 -139765039 + AT_rich Low_complexity Low_complexity 1 52 0 430 308 127 60 chr9 2507235 2507651 -139763793 + L2 LINE L2 2804 3247 -25 1719 243 94 8 chr9 2507653 2508164 -139763280 + L1ME3A LINE L1 5613 6167 -3 211 338 12 12 chr9 2509399 2509479 -139761965 + L2 LINE L2 2970 3049 -223 647 203 49 7 chr9 2509594 2509737 -139761707 - MIR SINE MIR -3 259 111 273 348 71 7 chr9 2511116 2511257 -139760187 + L2 LINE L2 3116 3265 -7 5214 175 17 6 chr9 2512332 2513395 -139758049 - L1 LINE L1 -1894 4252 3178 305 291 101 20 chr9 2513396 2513544 -139757900 - L2 LINE L2 -274 2998 2839 1810 101 42 32 chr9 2513597 2513905 -139757539 + L1MA3 LINE L1 5994 6304 -1 269 284 216 61 chr9 2513929 2514207 -139757237 + L2 LINE L2 2988 3308 -5 2212 90 0 0 chr9 2514226 2514527 -139756917 + L1PB1 LINE L1 5851 6151 0 427 286 138 22 chr9 2515741 2515972 -139755472 - MIR SINE MIR 0 262 5 847 140 25 13 chr9 2517648 2517805 -139753639 + L1M4b LINE L1 11 169 -6690 1365 216 28 21 chr9 2517810 2518199 -139753245 + L1 LINE L1 4848 5239 -907 297 54 0 0 chr9 2518200 2518237 -139753207 - MER61A LTR ERV1 0 343 307 337 57 0 38 chr9 2518237 2518290 -139753154 - MLT2A2 LTR ERVL 0 453 403 375 270 0 0 chr9 2518318 2518407 -139753037 - L1MC4 LINE L1 -1340 6702 6614 350 240 0 62 chr9 2518399 2518495 -139752949 + L1MC4 LINE L1 6614 6703 -1339 * 302 322 0 0 chr9 2518421 2518511 -139752933 - L1MC4 LINE L1 -1339 6703 6614 * 2970 77 0 5 chr9 2518513 2518915 -139752529 - MLT2A1 LTR ERVL -44 400 1 1531 140 29 57 chr9 2519005 2519355 -139752089 + L1MA9 LINE L1 5738 6077 -235 528 214 14 4 chr9 2519361 2519494 -139751950 + L1MA9 LINE L1 6180 6334 0 4612 239 52 11 chr9 2519502 2520646 -139750798 + L1M4b LINE L1 -372 818 -5510 281 230 63 0 chr9 2520654 2520771 -139750673 + L1M4b LINE L1 1806 1886 -4540 21379 37 12 10 chr9 2521036 2524519 -139746925 - L1PA4 LINE L1 0 6155 2667 5559 109 6 13 chr9 2524582 2525442 -139746002 + L1PA10 LINE L1 5305 6158 -10 271 173 245 43 chr9 2525465 2525481 -139745963 + L1MB8 LINE L1 5179 5190 -956 1900 181 33 33 chr9 2525481 2525845 -139745599 - THE1B LTR MaLR 0 364 1 271 173 245 43 chr9 2525845 2525967 -139745477 + L1MB8 LINE L1 5190 5345 -801 * 13454 147 37 21 chr9 2525966 2526315 -139745129 + L1PBa LINE L1 3 345 -6518 1800 94 4 33 chr9 2526315 2526560 -139744884 + AluSx SINE Alu 50 287 -25 203 0 0 36 chr9 2526564 2526592 -139744852 + (TAAAA)n Simple_repeat Simple_repeat 4 30 0 13454 147 37 21 chr9 2526592 2528749 -139742695 + L1PBa LINE L1 347 2552 -4311 12078 186 49 14 chr9 2528761 2535171 -139736273 + L1PB1 LINE L1 1 6864 -3 25 0 0 0 chr9 2535171 2535196 -139736248 + AT_rich Low_complexity Low_complexity 1 25 0 3619 179 28 43 chr9 2535203 2535348 -139736096 + L1MB8 LINE L1 5338 5484 -694 2166 122 0 3 chr9 2535348 2535642 -139735802 - AluSx SINE Alu -19 293 1 3619 179 28 43 chr9 2535642 2536347 -139735097 + L1MB8 LINE L1 5484 6175 -3 5862 49 3 0 chr9 2536567 2537284 -139734160 + L1PA7 LINE L1 5435 6153 -1 830 356 30 8 chr9 2537452 2537823 -139733621 - LTR16C LTR ERVL -11 480 102 340 236 62 35 chr9 2538543 2538687 -139732757 + MER103 DNA DNA 17 164 -2 538 281 43 0 chr9 2538752 2538891 -139732553 - MIR3 SINE MIR -51 157 13 391 239 141 33 chr9 2539252 2539436 -139732008 + MLT1J2 LTR MaLR 244 447 -3 563 337 80 52 chr9 2539697 2540391 -139731053 + L2 LINE L2 2550 3250 -22 210 118 0 0 chr9 2540623 2540657 -139730787 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 277 323 42 0 chr9 2540756 2540852 -139730592 + MIR SINE MIR 16 115 -147 435 286 28 45 chr9 2541035 2541213 -139730231 - MIR SINE MIR -84 178 4 274 351 105 12 chr9 2541676 2541847 -139729597 - MIR3 SINE MIR -3 205 19 196 286 44 33 chr9 2543329 2543420 -139728024 + MIR SINE MIR 2 93 -169 182 150 25 0 chr9 2543568 2543608 -139727836 + (CATAT)n Simple_repeat Simple_repeat 3 43 0 1130 284 94 23 chr9 2544283 2544857 -139726587 + MLT1L LTR MaLR 1 615 0 224 345 12 12 chr9 2544901 2544985 -139726459 + L2 LINE L2 3180 3263 -9 392 355 26 19 chr9 2545324 2545479 -139725965 - L2 LINE L2 -1 3271 3116 2020 142 10 0 chr9 2545867 2546169 -139725275 + AluSx SINE Alu 1 305 -7 370 291 82 0 chr9 2546514 2546624 -139724820 + MIR SINE MIR 29 147 -115 1913 163 29 27 chr9 2546649 2547023 -139724421 + THE1C LTR MaLR 1 375 0 320 202 24 12 chr9 2547168 2547252 -139724192 + L1ME3A LINE L1 6077 6161 -9 23 0 0 0 chr9 2547397 2547420 -139724024 + AT_rich Low_complexity Low_complexity 1 23 0 340 264 90 0 chr9 2547548 2547692 -139723752 - L1ME4a LINE L1 -289 5832 5676 369 0 0 0 chr9 2548548 2548589 -139722855 + (CA)n Simple_repeat Simple_repeat 1 41 0 265 330 92 63 chr9 2550160 2550508 -139720936 + L2 LINE L2 2362 2719 -595 1489 217 28 12 chr9 2550821 2551180 -139720264 + MLT1A1 LTR MaLR 1 365 0 367 115 297 40 chr9 2551181 2551329 -139720115 - MER53 DNA DNA -2 187 2 384 283 83 49 chr9 2551425 2551630 -139719814 + HAL1 LINE L1 1 212 -2295 246 332 50 50 chr9 2551750 2551970 -139719474 + HAL1 LINE L1 410 629 -1878 834 250 126 57 chr9 2552045 2552588 -139718856 + HAL1 LINE L1 780 1381 -1126 537 135 21 0 chr9 2552588 2552684 -139718760 + L1MB3 LINE L1 6083 6180 -3 834 250 126 57 chr9 2552684 2552821 -139718623 + HAL1 LINE L1 1381 1507 -1000 456 175 0 0 chr9 2552838 2552918 -139718526 + MADE1 DNA Mariner 1 80 0 1872 146 24 3 chr9 2552959 2553254 -139718190 + AluSx SINE Alu 3 303 -9 196 269 115 0 chr9 2553524 2553576 -139717868 - L2 LINE L2 -1 3271 3214 2128 152 0 15 chr9 2553584 2553926 -139717518 + MER1B DNA MER1_type 1 337 0 203 325 77 41 chr9 2554069 2554263 -139717181 - L2 LINE L2 -162 3110 2910 207 384 139 17 chr9 2554459 2554631 -139716813 + L2 LINE L2 3076 3268 -4 216 274 96 14 chr9 2556920 2556993 -139714451 - L2 LINE L2 -5 3267 3189 950 307 56 14 chr9 2557009 2557364 -139714080 - MLT1I LTR MaLR 0 409 40 22 0 0 0 chr9 2557799 2557821 -139713623 + AT_rich Low_complexity Low_complexity 1 22 0 311 299 0 21 chr9 2557874 2557971 -139713473 + L1MDa LINE L1 2459 2553 -3987 840 163 0 7 chr9 2557972 2558107 -139713337 + AluJo SINE Alu 1 134 -178 536 225 45 64 chr9 2558178 2558405 -139713039 + L1MDa LINE L1 2637 2860 -3680 2222 91 3 0 chr9 2558405 2558692 -139712752 + AluSp SINE Alu 1 288 -25 536 225 45 64 chr9 2558692 2558731 -139712713 + L1MDa LINE L1 2860 2898 -3642 3001 144 44 94 chr9 2558734 2559490 -139711954 + L1MB2 LINE L1 5449 6166 -5 834 272 121 49 chr9 2559549 2560083 -139711361 - MLT1F1 LTR MaLR -1 566 1 705 266 77 29 chr9 2560085 2560473 -139710971 + L1MDa LINE L1 2952 3363 -3177 2121 88 4 0 chr9 2560473 2560746 -139710698 + AluY SINE Alu 34 307 -4 705 266 77 29 chr9 2560746 2560774 -139710670 + L1MDa LINE L1 3363 3388 -3152 5644 180 161 28 chr9 2560995 2562559 -139708885 - MER52A LTR ERV1 0 1755 6 2879 249 58 43 chr9 2562853 2565138 -139706306 - L1 LINE L1 -3534 2816 830 1999 150 10 0 chr9 2565161 2565455 -139705989 + AluSx SINE Alu 1 297 -15 28408 107 13 10 chr9 2565457 2571122 -139700322 + L1PA7 LINE L1 748 6469 0 931 278 116 10 chr9 2571350 2571746 -139699698 + HAL1 LINE L1 1530 1967 -540 1101 284 149 15 chr9 2572437 2572973 -139698471 - L1 LINE L1 -5672 609 2 467 269 52 84 chr9 2573222 2574202 -139697242 + L1MEd LINE L1 648 1692 -884 893 241 67 15 chr9 2574416 2574818 -139696626 - L1M4 LINE L1 -2751 3395 2973 600 263 32 21 chr9 2575291 2575650 -139695794 + L1MEd LINE L1 2113 2437 -3778 3153 100 0 4 chr9 2575661 2576113 -139695331 - MER9 LTR ERVK -61 450 1 1542 246 66 26 chr9 2576274 2577013 -139694431 + L1MEd LINE L1 2704 3472 -2743 192 304 18 0 chr9 2577355 2577411 -139694033 + L2 LINE L2 3214 3270 -2 1349 214 121 6 chr9 2577518 2577873 -139693571 + MSTD LTR MaLR 1 396 0 2402 124 5 22 chr9 2579930 2580300 -139691144 + THE1B LTR MaLR 1 364 0 230 356 0 26 chr9 2580943 2581058 -139690386 - L2 LINE L2 -179 3093 2982 2276 94 0 0 chr9 2582476 2582764 -139688680 - AluSg SINE Alu -22 288 1 218 319 56 14 chr9 2582847 2582919 -139688525 - L2 LINE L2 -44 3228 3154 189 292 157 0 chr9 2582948 2583037 -139688407 + L2 LINE L2 3200 3302 -11 426 238 65 38 chr9 2583548 2583733 -139687711 + L1ME4a LINE L1 5929 6118 -3 299 222 52 30 chr9 2584296 2584431 -139687013 + L1ME4a LINE L1 5984 6121 0 2353 137 72 10 chr9 2585163 2585566 -139685878 + MSTA LTR MaLR 1 428 0 224 234 0 0 chr9 2585863 2585910 -139685534 + MER91A DNA MER1_type 2 48 -148 1741 194 85 8 chr9 2586004 2586405 -139685039 + MLT1C LTR MaLR 34 465 -2 225 224 0 52 chr9 2587729 2587787 -139683657 + MIR SINE MIR 99 153 -55 199 54 54 0 chr9 2587927 2587964 -139683480 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 517 197 230 0 chr9 2587968 2588120 -139683324 + MER5A DNA MER1_type 3 189 0 706 226 65 0 chr9 2588624 2588792 -139682652 - MER20 DNA MER1_type 0 219 41 2576 134 25 2 chr9 2588797 2589212 -139682232 - MSTB LTR MaLR 0 414 2 1479 221 25 43 chr9 2589518 2589962 -139681482 - LTR40b LTR ERVL 0 462 27 211 336 159 0 chr9 2589973 2590080 -139681364 + L2 LINE L2 3186 3309 -4 2142 195 86 13 chr9 2590162 2590629 -139680815 - MLT1D LTR MaLR -2 503 3 232 322 226 0 chr9 2591052 2591229 -139680215 - MIR SINE MIR -18 244 28 998 235 9 0 chr9 2591338 2591555 -139679889 + MER58A DNA MER1_type 1 219 -5 2016 183 113 33 chr9 2591555 2591995 -139679449 + MLT2B1 LTR ERVL 1 484 -36 419 35 18 0 chr9 2591995 2592052 -139679392 + (TAGA)n Simple_repeat Simple_repeat 1 58 0 2016 183 113 33 chr9 2592052 2592091 -139679353 + MLT2B1 LTR ERVL 484 518 -2 315 303 0 55 chr9 2592102 2592211 -139679233 - L1ME3A LINE L1 -105 6065 5963 395 260 1 9 chr9 2592308 2592441 -139679003 - L1ME3A LINE L1 -469 5693 5561 255 103 0 0 chr9 2592441 2592480 -139678964 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 5236 154 31 23 chr9 2592480 2592729 -139678715 - L1MA5A LINE L1 -9 6288 6042 2034 151 15 0 chr9 2592729 2593060 -139678384 + MER1B DNA MER1_type 2 337 0 5236 154 31 23 chr9 2593060 2594607 -139676837 - L1MA5A LINE L1 -255 6042 4474 23 0 0 0 chr9 2594607 2594630 -139676814 + AT_rich Low_complexity Low_complexity 1 23 0 4554 144 5 1 chr9 2594630 2595398 -139676046 - L1PA13 LINE L1 -6 6157 5387 * 5751 169 8 6 chr9 2595392 2596476 -139674968 - L1PA13 LINE L1 -1315 4831 3745 9179 223 26 13 chr9 2596476 2599279 -139672165 - L1 LINE L1 -1643 5145 2349 24 32 0 0 chr9 2599285 2599316 -139672128 + AT_rich Low_complexity Low_complexity 1 31 0 10530 193 28 52 chr9 2599332 2601660 -139669784 - L1 LINE L1 -4514 2275 3 1842 257 120 45 chr9 2601700 2603482 -139667962 - L1MC/D LINE L1 -707 5444 3632 21 36 0 0 chr9 2603783 2603811 -139667633 + AT_rich Low_complexity Low_complexity 1 28 0 802 263 64 57 chr9 2603837 2604575 -139666869 - L1MC/D LINE L1 -2630 3516 2774 24 32 0 0 chr9 2604653 2604684 -139666760 + AT_rich Low_complexity Low_complexity 1 31 0 212 143 48 0 chr9 2604738 2604780 -139666664 + (TATG)n Simple_repeat Simple_repeat 4 47 0 312 304 7 22 chr9 2605633 2605771 -139665673 + CT-rich Low_complexity Low_complexity 3 138 0 583 226 0 51 chr9 2606201 2606338 -139665106 - FLAM_C SINE Alu -3 130 1 2297 116 0 3 chr9 2606656 2606959 -139664485 - AluSq SINE Alu -11 302 1 658 282 39 83 chr9 2607227 2607710 -139663734 + MLT1J LTR MaLR 23 484 -27 705 243 53 37 chr9 2607746 2607989 -139663455 + MIR SINE MIR 14 260 -2 207 0 0 0 chr9 2609263 2609286 -139662158 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1069 152 0 6 chr9 2610204 2610369 -139661075 + AluSg/x SINE Alu 125 288 -24 1376 238 42 118 chr9 2611593 2611767 -139659677 + MLT1E LTR MaLR 5 191 -402 2408 98 3 0 chr9 2611767 2612074 -139659370 + AluSg SINE Alu 1 308 -2 1376 238 42 118 chr9 2612074 2612524 -139658920 + MLT1E LTR MaLR 191 581 -12 802 147 84 101 chr9 2614933 2615171 -139656273 + MLT1B LTR MaLR 22 255 -135 2474 180 30 8 chr9 2615559 2616053 -139655391 + MLT1D LTR MaLR 1 505 0 734 133 0 8 chr9 2616063 2616191 -139655253 + (TCCCC)n Simple_repeat Simple_repeat 3 129 0 370 308 0 0 chr9 2616584 2616675 -139654769 - MIR SINE MIR -88 174 84 310 232 62 40 chr9 2616950 2617176 -139654268 + L1MC/D LINE L1 5600 5829 -303 471 306 100 58 chr9 2617337 2617736 -139653708 + L1MC/D LINE L1 3925 4340 -1806 42 57 0 0 chr9 2617826 2617896 -139653548 + AT_rich Low_complexity Low_complexity 1 70 0 249 316 40 40 chr9 2617983 2618280 -139653164 + L1MC/D LINE L1 4549 4845 -1301 359 331 45 45 chr9 2618346 2618721 -139652723 + L1MC/D LINE L1 4903 5277 -869 956 283 73 25 chr9 2618780 2619179 -139652265 + L1MC/D LINE L1 5360 5777 -2031 22 35 0 0 chr9 2619179 2619208 -139652236 + AT_rich Low_complexity Low_complexity 1 29 0 901 193 0 0 chr9 2619209 2619370 -139652074 + MSTB LTR MaLR 1 161 -265 * 2179 184 92 2 chr9 2619361 2619797 -139651647 - LTR36 LTR ERV1 -40 571 97 4512 152 38 7 chr9 2619814 2620621 -139650823 - MSTA-int LTR MaLR -819 832 1 2250 174 48 17 chr9 2620621 2621036 -139650408 - MSTA LTR MaLR 0 428 1 313 111 122 11 chr9 2621037 2621127 -139650317 - LTR36 LTR ERV1 -511 100 1 831 167 0 0 chr9 2621127 2621265 -139650179 + MSTB LTR MaLR 287 424 -2 4343 204 47 6 chr9 2621276 2622220 -139649224 + MSTB-int LTR MaLR 5 986 -665 200 325 84 0 chr9 2622855 2622938 -139648506 - L2 LINE L2 0 3272 3183 342 307 134 22 chr9 2624365 2624544 -139646900 + L1ME LINE L1 257 455 -5615 341 177 52 21 chr9 2624737 2624833 -139646611 + L1ME LINE L1 542 640 -5440 1409 130 5 0 chr9 2624862 2625062 -139646382 + AluSx SINE Alu 1 201 -111 820 256 0 0 chr9 2625070 2625242 -139646202 - MER58A DNA MER1_type -52 172 1 1867 355 54 23 chr9 2625296 2627360 -139644084 - ERVL LTR ERVL -1151 4613 2453 315 331 14 52 chr9 2627535 2627822 -139643622 - ERVL LTR ERVL -4653 1111 836 192 345 136 9 chr9 2628926 2629036 -139642408 - L2 LINE L2 -20 3293 3170 2446 173 22 7 chr9 2629127 2629573 -139641871 + LTR32 LTR ERVL 19 471 0 612 296 36 18 chr9 2629840 2630199 -139641245 - MLT1I LTR MaLR 0 409 2 476 285 36 112 chr9 2630222 2630527 -139640917 + L2 LINE L2 2990 3271 -1 511 231 134 11 chr9 2631269 2631432 -139640012 + MER5A DNA MER1_type 4 189 0 253 277 47 27 chr9 2632293 2632441 -139639003 + L2 LINE L2 1597 1747 -1567 221 364 119 36 chr9 2632655 2633067 -139638377 + L2 LINE L2 2822 3267 -5 1930 135 0 14 chr9 2634143 2634457 -139636987 - AluSx SINE Alu 0 310 1 21 82 0 0 chr9 2635172 2635221 -139636223 + AT_rich Low_complexity Low_complexity 1 49 0 27 49 0 0 chr9 2635257 2635298 -139636146 + AT_rich Low_complexity Low_complexity 1 41 0 23 33 0 0 chr9 2635571 2635601 -139635843 + AT_rich Low_complexity Low_complexity 1 30 0 314 253 35 53 chr9 2636295 2636422 -139635022 - MIR SINE MIR -83 125 3 * 480 195 146 8 chr9 2636422 2636538 -139634906 - MER5A DNA MER1_type -15 174 42 2233 91 20 14 chr9 2636788 2637085 -139634359 - AluSq SINE Alu -14 299 1 4337 208 49 11 chr9 2637144 2637343 -139634101 - MER45B DNA AcHobo -548 1033 843 2326 88 0 0 chr9 2637343 2637638 -139633806 - AluY SINE Alu -16 295 1 4337 208 49 11 chr9 2637638 2638430 -139633014 - MER45B DNA AcHobo -738 843 4 2943 96 22 0 chr9 2638557 2638964 -139632480 + L1PA10 LINE L1 5749 6164 -4 2152 133 0 0 chr9 2640149 2640443 -139631001 - AluSg SINE Alu -16 294 1 384 310 62 31 chr9 2640487 2640713 -139630731 - L1MC/D LINE L1 -2034 5774 5542 2044 181 0 3 chr9 2640936 2641301 -139630143 + MLT2D LTR ERVL 1 364 -50 597 177 0 0 chr9 2641301 2641414 -139630030 + (TCCA)n Simple_repeat Simple_repeat 1 113 0 265 87 0 68 chr9 2641414 2641478 -139629966 + MLT2C1 LTR ERVL 355 397 0 272 273 58 65 chr9 2641519 2641794 -139629650 + L1M4 LINE L1 3951 4223 -1923 254 311 56 11 chr9 2642161 2642251 -139629193 - MIR SINE MIR -95 113 20 971 251 4 30 chr9 2642275 2642506 -139628938 - MIR SINE MIR -1 261 37 21 0 0 0 chr9 2642587 2642608 -139628836 + AT_rich Low_complexity Low_complexity 1 21 0 2327 78 0 0 chr9 2642608 2642891 -139628553 + AluY SINE Alu 1 283 -28 208 0 0 0 chr9 2642891 2642914 -139628530 + (TAAA)n Simple_repeat Simple_repeat 2 112 0 228 288 45 15 chr9 2643120 2643186 -139628258 + MIR SINE MIR 20 87 -175 662 265 26 48 chr9 2643310 2643540 -139627904 + MIR SINE MIR 36 260 -2 210 71 0 0 chr9 2644384 2644412 -139627032 + (TG)n Simple_repeat Simple_repeat 1 28 0 611 274 61 71 chr9 2644722 2645454 -139625990 + L1MC4a LINE L1 5148 5819 -302 1390 205 4 4 chr9 2645462 2645725 -139625719 + AluJo SINE Alu 32 294 -18 392 151 27 0 chr9 2645830 2645903 -139625541 + MER116 DNA Mariner 1 75 -5 21 0 0 0 chr9 2645904 2645925 -139625519 + AT_rich Low_complexity Low_complexity 1 21 0 359 265 71 109 chr9 2646193 2646431 -139625013 - MIR SINE MIR -25 237 9 776 279 59 41 chr9 2646730 2646806 -139624638 - LTR33 LTR ERVL -28 493 420 1212 162 69 0 chr9 2646806 2647010 -139624434 + MER20 DNA MER1_type 2 219 0 776 279 59 41 chr9 2647010 2647274 -139624170 - LTR33 LTR ERVL -101 420 147 612 159 102 64 chr9 2647444 2647601 -139623843 + MLT1A2 LTR MaLR 1 163 -211 193 204 0 56 chr9 2647663 2647771 -139623673 + CT-rich Low_complexity Low_complexity 6 107 0 911 184 61 31 chr9 2647771 2647967 -139623477 + MLT1A2 LTR MaLR 173 374 0 312 268 274 6 chr9 2648850 2649018 -139622426 + MIR SINE MIR 2 214 -48 366 237 140 77 chr9 2649556 2649684 -139621760 - MIR SINE MIR -9 253 106 2450 72 7 7 chr9 2649684 2649991 -139621453 + AluSc SINE Alu 1 307 -2 366 237 140 77 chr9 2649991 2650069 -139621375 - MIR SINE MIR -156 106 34 4724 157 37 21 chr9 2650621 2652532 -139618912 + L1MA2 LINE L1 15 1895 -5828 2311 113 0 0 chr9 2652532 2652833 -139618611 - AluSg SINE Alu -9 301 1 4724 157 37 21 chr9 2652833 2653861 -139617583 + L1MA2 LINE L1 1895 2906 -4817 2701 100 11 0 chr9 2653861 2654231 -139617213 - THE1C LTR MaLR -1 374 1 10400 123 14 30 chr9 2654231 2655837 -139615607 - THE1C-int LTR MaLR 0 1580 1 2188 131 50 8 chr9 2655837 2656197 -139615247 - THE1C LTR MaLR 0 375 1 4724 157 37 21 chr9 2656197 2657466 -139613978 + L1MA2 LINE L1 2906 4154 -3569 926 62 86 0 chr9 2657466 2657594 -139613850 + MER85 DNA T2_type 1 139 0 4724 157 37 21 chr9 2657594 2660807 -139610637 + L1MA2 LINE L1 4154 7723 0 467 309 186 14 chr9 2660851 2661136 -139610308 - MLT1I LTR MaLR -7 402 69 25 65 0 0 chr9 2661403 2661449 -139609995 + AT_rich Low_complexity Low_complexity 1 46 0 2244 103 3 7 chr9 2661449 2661749 -139609695 - AluSx SINE Alu -13 299 1 244 324 72 0 chr9 2663013 2663124 -139608320 + MIR SINE MIR 71 189 -73 347 241 23 0 chr9 2663580 2663667 -139607777 - MER96 DNA MER1_type? -81 94 6 285 231 0 26 chr9 2663959 2664037 -139607407 + L1MC5 LINE L1 7836 7911 -50 21 0 0 0 chr9 2664228 2664249 -139607195 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 2665377 2665398 -139606046 + AT_rich Low_complexity Low_complexity 1 21 0 2488 129 3 3 chr9 2665533 2665897 -139605547 + THE1B LTR MaLR 1 364 0 2066 192 117 16 chr9 2666701 2667154 -139604290 + MLT1D LTR MaLR 1 499 -6 2050 102 77 112 chr9 2667383 2667822 -139603622 + MSTA LTR MaLR 1 424 -4 304 147 147 42 chr9 2668070 2668165 -139603279 + MIR3 SINE MIR 98 202 -6 275 235 0 29 chr9 2668326 2668394 -139603050 - L2 LINE L2 0 3272 3207 768 224 12 0 chr9 2669721 2669882 -139601562 + MER69A DNA AcHobo 1 163 -14 888 158 184 11 chr9 2670144 2670334 -139601110 + MER58A DNA MER1_type 2 224 0 295 296 82 47 chr9 2670546 2670779 -139600665 + L2 LINE L2 3073 3313 0 1862 119 59 54 chr9 2670946 2671317 -139600127 + THE1C LTR MaLR 1 373 -2 885 271 54 7 chr9 2671898 2672228 -139599216 - MLT1H1 LTR MaLR -4 551 171 235 263 0 18 chr9 2675080 2675137 -139596307 - MIR3 SINE MIR -42 166 111 278 216 0 0 chr9 2677471 2677522 -139593922 + L2 LINE L2 3252 3302 -11 410 302 26 0 chr9 2677760 2677876 -139593568 + MIR SINE MIR 64 182 -80 288 239 0 14 chr9 2677925 2677996 -139593448 + HsTC2 DNA Tc2 1827 1896 -2 382 276 178 36 chr9 2678618 2678955 -139592489 + L1MC4a LINE L1 5527 5911 -1897 21 0 0 0 chr9 2678955 2678976 -139592468 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr9 2679142 2679178 -139592266 + AT_rich Low_complexity Low_complexity 1 36 0 3925 172 80 13 chr9 2680280 2681054 -139590390 - LTR1B LTR ERV1 0 826 1 25 0 0 0 chr9 2681350 2681375 -139590069 + AT_rich Low_complexity Low_complexity 1 25 0 2376 172 63 27 chr9 2681885 2682326 -139589118 - LTR32 LTR ERVL 0 471 15 209 291 186 0 chr9 2682374 2682460 -139588984 + MIR SINE MIR 53 154 -108 1994 114 61 10 chr9 2682467 2682764 -139588680 + AluSx SINE Alu 1 312 0 676 287 137 20 chr9 2683517 2684007 -139587437 - L2 LINE L2 -1 3312 2767 329 219 13 42 chr9 2684022 2684124 -139587320 + LTR16A LTR ERVL 358 457 0 832 153 200 12 chr9 2684456 2684626 -139586818 + AluSg/x SINE Alu 71 272 -37 3171 111 12 10 chr9 2684913 2685332 -139586112 + MER4E LTR ERV1 1 503 -263 1907 141 0 0 chr9 2685332 2685608 -139585836 + AluSx SINE Alu 37 312 0 3171 111 12 10 chr9 2685608 2685871 -139585573 + MER4E LTR ERV1 503 764 -2 649 196 14 7 chr9 2686111 2686254 -139585190 - MER5A DNA MER1_type -45 144 1 305 266 124 80 chr9 2686258 2686484 -139584960 + MLT1J LTR MaLR 274 509 -2 2968 71 2 117 chr9 2687323 2687829 -139583615 - LTR7 LTR ERV1 -2 448 1 2300 102 59 13 chr9 2687829 2688202 -139583242 - HERVH LTR ERV1 0 7713 7324 1383 129 18 5 chr9 2688202 2688419 -139583025 - HERVH LTR ERV1 -1894 5819 5600 3116 127 3 2 chr9 2688420 2689040 -139582404 - HERVH LTR ERV1 -2564 5149 4481 * 6013 97 5 2 chr9 2689037 2689889 -139581555 - HERVH LTR ERV1 -3720 3993 3140 * 15343 113 23 27 chr9 2689868 2692740 -139578704 - HERVH LTR ERV1 -4718 2995 1 2826 70 123 2 chr9 2692742 2693142 -139578302 - LTR7 LTR ERV1 -2 448 1 220 310 0 23 chr9 2695443 2695530 -139575914 + GA-rich Low_complexity Low_complexity 3 87 0 2641 35 0 16 chr9 2696584 2696900 -139574544 + AluY SINE Alu 1 311 0 21 0 0 0 chr9 2696900 2696921 -139574523 + AT_rich Low_complexity Low_complexity 1 21 0 670 258 32 26 chr9 2697826 2698016 -139573428 + MIR SINE MIR 13 203 -59 773 198 48 39 chr9 2699118 2699325 -139572119 + L2 LINE L2 3104 3312 -1 282 255 97 41 chr9 2699867 2700012 -139571432 + MER103 DNA DNA 11 163 -3 1132 291 78 18 chr9 2700464 2700901 -139570543 - LTR16B LTR ERVL 0 464 2 460 186 41 105 chr9 2701067 2701260 -139570184 - MER69A DNA AcHobo 0 177 1 299 261 9 36 chr9 2701822 2701933 -139569511 + GA-rich Low_complexity Low_complexity 4 111 0 191 341 12 12 chr9 2702484 2702566 -139568878 + L2 LINE L2 3232 3313 0 652 296 105 35 chr9 2703649 2703856 -139567588 + L1MEd LINE L1 919 1110 -5200 5945 88 21 3 chr9 2703856 2704622 -139566822 + LTR17 LTR ERV1 1 780 0 652 296 105 35 chr9 2704622 2705251 -139566193 + L1MEd LINE L1 1110 1855 -4455 368 309 38 51 chr9 2706286 2706442 -139565002 + MIR SINE MIR 9 161 -69 373 213 0 13 chr9 2706616 2706691 -139564753 - MIR3 SINE MIR -15 193 120 278 253 20 40 chr9 2706878 2706977 -139564467 + MER113 DNA MER1_type? 310 406 -115 186 275 0 0 chr9 2708480 2708549 -139562895 + (CATA)n Simple_repeat Simple_repeat 4 72 0 199 333 0 31 chr9 2709030 2709126 -139562318 - L2 LINE L2 -606 2708 2616 403 269 135 55 chr9 2709298 2709581 -139561863 - MLT1I LTR MaLR -39 370 85 268 324 65 36 chr9 2710702 2710841 -139560603 - MIR3 SINE MIR -7 201 59 365 241 15 131 chr9 2711496 2711633 -139559811 + MIR3 SINE MIR 85 205 -3 21 36 0 0 chr9 2711921 2711949 -139559495 + AT_rich Low_complexity Low_complexity 1 28 0 1597 123 0 0 chr9 2711963 2712183 -139559261 - AluSq SINE Alu -93 220 1 731 273 157 37 chr9 2712885 2713350 -139558094 + LTR33 LTR ERVL 1 521 0 485 283 40 7 chr9 2713697 2713849 -139557595 + LTR33A LTR ERVL 367 523 0 456 277 117 26 chr9 2713976 2714207 -139557237 + MIR SINE MIR 11 262 0 1544 241 56 53 chr9 2715499 2715878 -139555566 + MLT1H LTR MaLR 1 427 -122 2583 89 60 20 chr9 2715878 2716228 -139555216 - THE1B LTR MaLR 0 364 1 1544 241 56 53 chr9 2716228 2716347 -139555097 + MLT1H LTR MaLR 427 544 -5 1745 227 33 85 chr9 2716750 2717318 -139554126 + MER77 LTR ERV1 85 601 -4 194 327 59 30 chr9 2717335 2717436 -139554008 + L2 LINE L2 2966 3069 -244 400 257 125 56 chr9 2717739 2717763 -139553681 - L2 LINE L2 -2 3311 3290 2332 115 0 0 chr9 2717763 2718067 -139553377 + AluSx SINE Alu 1 304 -8 400 257 125 56 chr9 2718067 2718186 -139553258 - L2 LINE L2 -23 3290 3158 1225 151 14 9 chr9 2718188 2718400 -139553044 - AluJo SINE Alu -14 298 86 558 317 42 0 chr9 2718409 2718576 -139552868 - L2 LINE L2 -160 3153 2980 2256 98 10 0 chr9 2719267 2719564 -139551880 + AluSx SINE Alu 1 300 -12 3051 197 5 17 chr9 2721001 2721590 -139549854 + L1MB7 LINE L1 5594 6175 -9 233 181 58 69 chr9 2721907 2721929 -139549515 - L1MD3 LINE L1 0 8039 8018 2235 116 7 0 chr9 2721929 2722231 -139549213 + AluSp SINE Alu 1 304 -9 233 181 58 69 chr9 2722231 2722337 -139549107 - L1MD3 LINE L1 -21 8018 7922 254 295 13 13 chr9 2722347 2722425 -139549019 + CT-rich Low_complexity Low_complexity 2 79 0 200 229 0 16 chr9 2722425 2722486 -139548958 + (TA)n Simple_repeat Simple_repeat 1 60 0 443 198 32 76 chr9 2722508 2722665 -139548779 - L1MC4 LINE L1 -156 7886 7737 1667 238 100 40 chr9 2722697 2723226 -139548218 - MLT1F1 LTR MaLR 0 567 3 3402 257 85 67 chr9 2723230 2723768 -139547676 - L1MC4a LINE L1 -195 7613 7086 1809 188 50 19 chr9 2723768 2724146 -139547298 - MLT1B LTR MaLR 0 390 1 3402 257 85 67 chr9 2724146 2724405 -139547039 - L1MC4a LINE L1 -722 7086 6833 713 136 18 0 chr9 2724405 2724515 -139546929 + L1MB5 LINE L1 6063 6174 0 3402 257 85 67 chr9 2724515 2725410 -139546034 - L1MC4a LINE L1 -975 6833 5889 195 42 0 0 chr9 2725868 2725892 -139545552 + (TC)n Simple_repeat Simple_repeat 1 24 0 189 74 0 0 chr9 2725907 2725934 -139545510 + (CA)n Simple_repeat Simple_repeat 1 27 0 2386 84 0 0 chr9 2727904 2728203 -139543241 + AluSx SINE Alu 1 299 -13 1470 250 97 24 chr9 2729638 2730186 -139541258 - L1ME3A LINE L1 -219 5951 5364 246 62 0 0 chr9 2730207 2730239 -139541205 + (TC)n Simple_repeat Simple_repeat 1 32 0 370 291 158 0 chr9 2730962 2731089 -139540355 + MER117 DNA MER1_type 1 147 -50 734 198 23 29 chr9 2731124 2731296 -139540148 + MER5B DNA MER1_type 1 171 -7 771 130 39 137 chr9 2731311 2731575 -139539869 - MER106B DNA MER1_type 0 1059 1 30 45 0 0 chr9 2731913 2731957 -139539487 + AT_rich Low_complexity Low_complexity 1 44 0 2034 158 0 0 chr9 2732098 2732408 -139539036 - AluSx SINE Alu -2 310 1 347 321 22 0 chr9 2732571 2732705 -139538739 + MIR SINE MIR 51 187 -75 1770 152 3 42 chr9 2732724 2733034 -139538410 + AluJo SINE Alu 1 298 -14 513 252 65 7 chr9 2735483 2735638 -139535806 - MER103 DNA DNA -1 165 2 563 228 55 118 chr9 2735802 2735968 -139535476 - MIR SINE MIR -10 252 77 191 59 0 29 chr9 2735968 2736002 -139535442 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 2287 87 3 0 chr9 2736005 2736292 -139535152 - AluSp SINE Alu -25 288 1 563 228 55 118 chr9 2736292 2736375 -139535069 - MIR SINE MIR -187 75 15 935 235 11 0 chr9 2736754 2736941 -139534503 + MER5A DNA MER1_type 1 189 0 225 374 24 0 chr9 2736960 2737043 -139534401 - MIR SINE MIR -118 144 60 897 304 30 49 chr9 2737047 2737376 -139534068 + MLT1K LTR MaLR 2 324 -264 256 253 99 11 chr9 2737961 2738052 -139533392 - MIR SINE MIR -2 260 162 181 329 73 0 chr9 2738161 2738243 -139533201 - MIR SINE MIR -172 90 3 1969 155 3 0 chr9 2739606 2739903 -139531541 + AluJb SINE Alu 1 298 -14 271 252 225 0 chr9 2740748 2740859 -139530585 + MIR SINE MIR 57 192 -70 644 262 36 6 chr9 2741647 2741815 -139529629 - MIR3 SINE MIR -2 206 34 235 281 0 0 chr9 2742133 2742190 -139529254 + L2 LINE L2 3166 3222 -50 318 226 263 27 chr9 2742457 2742643 -139528801 + L1ME3A LINE L1 5931 6160 -10 22 70 0 0 chr9 2742667 2742710 -139528734 + AT_rich Low_complexity Low_complexity 1 43 0 4960 234 21 37 chr9 2742710 2743853 -139527591 + L1MC1 LINE L1 2115 3275 -3151 2761 23 0 0 chr9 2743853 2744155 -139527289 - AluY SINE Alu -9 302 1 4960 234 21 37 chr9 2744155 2744306 -139527138 + L1MC1 LINE L1 3275 3427 -2999 1809 133 33 0 chr9 2744306 2744576 -139526868 + AluJb SINE Alu 9 287 -25 4960 234 21 37 chr9 2744576 2745451 -139525993 + L1MC1 LINE L1 3427 4247 -2179 2845 108 13 5 chr9 2745453 2745850 -139525594 + MSTA LTR MaLR 1 400 -28 8051 31 0 0 chr9 2745850 2747452 -139523992 - L1PA4 LINE L1 0 6155 4553 6401 156 29 17 chr9 2747465 2748790 -139522654 + L1MC1 LINE L1 5272 6613 0 1504 140 42 45 chr9 2748853 2749117 -139522327 + L1PA15 LINE L1 5889 6151 -14 211 64 21 43 chr9 2749946 2749993 -139521451 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 1335 272 60 8 chr9 2751197 2751561 -139519883 + LTR16C LTR ERVL 99 481 -10 378 222 0 0 chr9 2751628 2751709 -139519735 - MER57A LTR ERV1 0 403 323 406 274 41 45 chr9 2751871 2752134 -139519310 - MER57B LTR ERV1 -80 322 67 4766 133 32 1 chr9 2752228 2752948 -139518496 + Tigger2 DNA MER2_type 3 744 -1974 1401 152 19 60 chr9 2753014 2753049 -139518395 + Tigger2 DNA MER2_type 2461 2496 -222 2223 117 0 0 chr9 2753049 2753349 -139518095 - AluSx SINE Alu -12 300 1 1401 152 19 60 chr9 2753349 2753582 -139517862 + Tigger2 DNA MER2_type 2496 2718 0 643 234 102 24 chr9 2753931 2754136 -139517308 + MIR SINE MIR 10 230 -32 372 222 40 20 chr9 2755763 2755862 -139515582 - MIR3 SINE MIR 0 208 108 709 244 84 121 chr9 2756752 2757157 -139514287 - L2 LINE L2 0 3272 2883 2545 32 0 23 chr9 2757259 2757568 -139513876 + AluY SINE Alu 2 303 -8 537 330 45 5 chr9 2757568 2757789 -139513655 - Charlie8 DNA MER1_type -2187 230 1 1021 181 33 0 chr9 2757797 2757979 -139513465 + MER5A DNA MER1_type 1 188 -1 1291 200 77 0 chr9 2757989 2758289 -139513155 + MER33 DNA MER1_type 1 323 -1 182 335 88 59 chr9 2758306 2758545 -139512899 - L2 LINE L2 -486 2828 2583 816 273 0 6 chr9 2758704 2758887 -139512557 + MIR SINE MIR 12 193 -69 522 223 32 38 chr9 2759689 2759846 -139511598 + L1MC4a LINE L1 5784 5939 -1869 440 177 54 39 chr9 2759851 2759981 -139511463 - MER104 DNA Tc2 -13 167 36 1642 163 20 27 chr9 2760453 2760754 -139510690 + AluJo SINE Alu 1 299 -13 2190 120 10 0 chr9 2761076 2761376 -139510068 + AluSx SINE Alu 1 303 -9 2187 132 0 0 chr9 2762379 2762689 -139508755 + AluSx SINE Alu 1 310 -2 265 245 7 24 chr9 2762766 2762903 -139508541 + L1P3 LINE L1 5706 5833 -288 * 1740 216 41 19 chr9 2762895 2763535 -139507909 - L1ME LINE L1 -596 5570 4921 1284 201 108 2 chr9 2763539 2763998 -139507446 + L1ME1 LINE L1 5589 6164 -20 4082 233 56 43 chr9 2764039 2764348 -139507096 - L1MCb LINE L1 -3692 2872 2568 1819 172 0 10 chr9 2764348 2764650 -139506794 + AluJo SINE Alu 7 305 -7 4082 233 56 43 chr9 2764650 2766876 -139504568 - L1MCb LINE L1 -3996 2568 371 2220 139 150 5 chr9 2766876 2767250 -139504194 + MSTA LTR MaLR 1 428 0 8177 153 76 51 chr9 2767252 2767455 -139503989 + MSTA-int LTR MaLR 3 199 -1381 2279 110 0 0 chr9 2767455 2767765 -139503679 + AluY SINE Alu 2 311 0 8177 153 76 51 chr9 2767765 2769099 -139502345 + MSTA-int LTR MaLR 199 1579 -1 1934 168 129 31 chr9 2769102 2769490 -139501954 + MSTA LTR MaLR 3 428 0 4082 233 56 43 chr9 2769490 2769643 -139501801 - L1MCb LINE L1 -6194 370 6 254 174 221 0 chr9 2769764 2769850 -139501594 + L1ME4a LINE L1 6012 6116 -5 236 304 0 22 chr9 2769880 2769972 -139501472 + L1MC/D LINE L1 5813 5902 -1906 554 182 73 0 chr9 2770019 2770129 -139501315 + MER110A LTR ERV1 1 118 -350 470 174 55 9 chr9 2770222 2770331 -139501113 + MER110A LTR ERV1 355 468 0 2062 132 0 3 chr9 2770350 2770639 -139500805 - AluSx SINE Alu -19 293 6 1102 168 50 0 chr9 2771794 2771973 -139499471 - MER5A DNA MER1_type -1 188 1 198 292 101 11 chr9 2773189 2773278 -139498166 + MIR SINE MIR 104 200 -62 2281 69 7 36 chr9 2774181 2774487 -139496957 + AluY SINE Alu 1 297 -14 305 258 100 74 chr9 2774519 2774937 -139496507 + L1MC4 LINE L1 7611 8042 0 359 244 34 34 chr9 2777681 2777800 -139493644 - MER94 DNA DNA -15 119 1 435 236 47 66 chr9 2778394 2778606 -139492838 - L1MC4a LINE L1 -1971 5837 5630 1903 231 120 33 chr9 2779640 2780216 -139491228 + MLT1E2 LTR MaLR 1 626 0 653 190 0 0 chr9 2780952 2781052 -139490392 - AluS SINE Alu -212 100 1 33 25 0 0 chr9 2781123 2781163 -139490281 + AT_rich Low_complexity Low_complexity 1 40 0 1703 172 3 21 chr9 2781163 2781454 -139489990 - AluJo SINE Alu -21 291 6 632 209 98 33 chr9 2781519 2781734 -139489710 - MER96B DNA MER1_type? 0 417 189 550 217 9 0 chr9 2781784 2781890 -139489554 + MER5A DNA MER1_type 3 109 -80 2062 116 0 80 chr9 2782023 2782359 -139489085 + AluSx SINE Alu 1 309 -3 269 346 13 26 chr9 2782407 2782560 -139488884 - MIR SINE MIR -102 160 10 227 276 0 0 chr9 2782634 2782692 -139488752 + CT-rich Low_complexity Low_complexity 2 59 0 3001 138 72 23 chr9 2783271 2783827 -139487617 + L1MB2 LINE L1 5587 6169 -2 631 169 36 90 chr9 2784149 2784197 -139487247 + L1MD2 LINE L1 6186 6235 -124 2207 104 7 10 chr9 2784197 2784495 -139486949 + AluSg SINE Alu 1 297 -13 631 169 36 90 chr9 2784495 2784612 -139486832 + L1MD2 LINE L1 6235 6342 -17 2202 92 28 0 chr9 2785758 2786042 -139485402 + AluSx SINE Alu 1 292 -20 2247 106 10 3 chr9 2786054 2786365 -139485079 + AluSq SINE Alu 1 313 0 302 290 0 40 chr9 2787625 2787725 -139483719 - L1MC4 LINE L1 -1339 6703 6608 2414 71 3 0 chr9 2790997 2791294 -139480150 + AluSp SINE Alu 1 298 -15 1576 159 0 22 chr9 2791995 2792266 -139479178 + AluJb SINE Alu 5 269 -43 189 0 0 0 chr9 2792645 2792666 -139478778 + (A)n Simple_repeat Simple_repeat 1 21 0 2366 100 0 3 chr9 2792668 2792979 -139478465 + AluSp SINE Alu 1 310 -3 1930 143 3 19 chr9 2793896 2794211 -139477233 - AluJb SINE Alu -2 310 1 550 157 102 0 chr9 2795037 2795145 -139476299 + MER103 DNA DNA 2 120 -46 214 194 0 0 chr9 2795630 2795683 -139475761 + (CATA)n Simple_repeat Simple_repeat 1 53 0 221 371 124 12 chr9 2795689 2795948 -139475496 + L2 LINE L2 2384 2671 -643 271 239 65 43 chr9 2798432 2798524 -139472920 + MIR3 SINE MIR 9 102 -106 331 244 138 50 chr9 2798739 2798899 -139472545 + MIR SINE MIR 69 242 -20 2016 93 76 0 chr9 2800539 2800829 -139470615 + AluSq SINE Alu 2 313 0 190 324 121 44 chr9 2800930 2801112 -139470332 + L2 LINE L2 3077 3272 0 1196 311 153 46 chr9 2801778 2802991 -139468453 + L3 LINE CR1 213 1555 -22 577 282 4 73 chr9 2804306 2804540 -139466904 - MIR SINE MIR -42 220 3 300 206 41 14 chr9 2804627 2804700 -139466744 - Charlie8 DNA MER1_type 0 2417 2343 294 306 32 16 chr9 2804753 2804877 -139466567 - Charlie8 DNA MER1_type -2155 262 137 21 0 0 0 chr9 2805748 2805769 -139465675 + AT_rich Low_complexity Low_complexity 1 21 0 1374 103 5 5 chr9 2805898 2806082 -139465362 + U2 snRNA snRNA 4 187 -1 28 29 0 0 chr9 2809319 2809354 -139462090 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr9 2810111 2810133 -139461311 + AT_rich Low_complexity Low_complexity 1 22 0 216 0 0 0 chr9 2810664 2810688 -139460756 + (T)n Simple_repeat Simple_repeat 1 24 0 1115 156 145 46 chr9 2811884 2812118 -139459326 + L1MB3 LINE L1 5874 6142 -41 2305 105 3 6 chr9 2812118 2812432 -139459012 + AluSp SINE Alu 1 313 0 1115 156 145 46 chr9 2812432 2812479 -139458965 + L1MB3 LINE L1 6142 6183 0 342 0 0 0 chr9 2813090 2813128 -139458316 + (A)n Simple_repeat Simple_repeat 1 38 0 2438 71 0 0 chr9 2813274 2813570 -139457874 + AluSg SINE Alu 7 302 -8 224 229 0 0 chr9 2814523 2814571 -139456873 + (CTA)n Simple_repeat Simple_repeat 2 49 0 820 264 37 16 chr9 2814591 2814837 -139456607 - MIR SINE MIR -9 253 3 6396 163 53 103 chr9 2815038 2815314 -139456130 - Tigger6b DNA MER2_type -12 1585 1297 1538 182 18 14 chr9 2815314 2815594 -139455850 - AluJo SINE Alu -31 281 1 6396 163 53 103 chr9 2815594 2815960 -139455484 - Tigger6b DNA MER2_type -300 1297 914 2094 122 6 28 chr9 2815960 2816279 -139455165 - AluSx SINE Alu 0 312 1 1830 121 27 40 chr9 2816282 2816579 -139454865 - AluSx SINE Alu -19 293 1 6396 163 53 103 chr9 2816579 2817100 -139454344 - Tigger6b DNA MER2_type -685 912 366 2031 141 3 7 chr9 2817100 2817399 -139454045 - AluSx SINE Alu -14 298 1 6396 163 53 103 chr9 2817399 2817801 -139453643 - Tigger6b DNA MER2_type -1231 366 100 2052 184 71 0 chr9 2817801 2818165 -139453279 + MLT1B LTR MaLR 1 390 0 6396 163 53 103 chr9 2818165 2818258 -139453186 - Tigger6b DNA MER2_type -1497 100 4 180 245 0 0 chr9 2818788 2818841 -139452603 + (CATATA)n Simple_repeat Simple_repeat 1 53 0 2583 102 8 25 chr9 2819130 2819307 -139452137 + THE1A LTR MaLR 1 170 -185 2080 121 13 10 chr9 2819307 2819613 -139451831 - AluSx SINE Alu -5 307 1 2583 102 8 25 chr9 2819613 2819796 -139451648 + THE1A LTR MaLR 170 355 0 1042 173 6 0 chr9 2820040 2820208 -139451236 + AluJb SINE Alu 1 169 -143 1080 32 0 0 chr9 2820231 2820355 -139451089 + L1PA4 LINE L1 6029 6152 -3 724 183 8 38 chr9 2820851 2820982 -139450462 + FRAM SINE Alu 1 127 -49 2233 89 0 7 chr9 2820990 2821283 -139450161 - AluSx SINE Alu -19 293 3 4295 103 2 0 chr9 2821788 2822341 -139449103 + MER41A LTR ERV1 1 554 0 1930 131 147 6 chr9 2822483 2822803 -139448641 + MLT1A1 LTR MaLR 1 365 0 21 0 0 0 chr9 2823380 2823401 -139448043 + AT_rich Low_complexity Low_complexity 1 21 0 2125 109 3 20 chr9 2823519 2823821 -139447623 - AluSx SINE Alu -5 307 11 1709 194 118 78 chr9 2824357 2824976 -139446468 + LTR48B LTR ERV1 1 644 0 1460 126 141 27 chr9 2826245 2826629 -139444815 + LTR54 LTR ERV1 1 510 0 192 211 70 35 chr9 2827511 2827568 -139443876 + MIR SINE MIR 108 166 -96 2057 158 12 48 chr9 2828789 2829188 -139442256 + LTR8A LTR ERV1 35 419 -308 1371 171 62 43 chr9 2829404 2829708 -139441736 + LTR8A LTR ERV1 418 727 0 419 286 8 25 chr9 2830119 2830238 -139441206 - MIR SINE MIR -70 138 22 636 289 169 16 chr9 2831055 2831363 -139440081 - L2 LINE L2 0 3313 2959 2150 132 3 0 chr9 2832362 2832665 -139438779 + AluSx SINE Alu 1 304 -8 2226 116 0 0 chr9 2832710 2833004 -139438440 + AluSg SINE Alu 2 295 -15 1858 123 0 4 chr9 2833007 2833260 -139438184 + AluSx SINE Alu 2 253 -59 299 140 80 0 chr9 2833345 2833394 -139438050 - MLT1A1 LTR MaLR 0 365 313 2934 162 30 16 chr9 2833394 2833894 -139437550 + MLT2B2 LTR ERVL 1 507 -8 1193 208 96 7 chr9 2833896 2834189 -139437255 - MLT1A1 LTR MaLR -46 319 1 320 308 10 29 chr9 2834190 2834294 -139437150 - MIR SINE MIR -90 118 17 571 277 126 26 chr9 2834762 2834993 -139436451 - MIR SINE MIR -2 260 7 1491 178 87 11 chr9 2835266 2835553 -139435891 + AluJo SINE Alu 1 309 -3 22 70 0 0 chr9 2835989 2836032 -139435412 + AT_rich Low_complexity Low_complexity 1 43 0 1582 102 5 0 chr9 2836885 2837100 -139434344 - AluSc SINE Alu -4 305 90 424 41 0 0 chr9 2837100 2837149 -139434295 - AluSc SINE Alu -261 50 2 234 176 0 0 chr9 2838105 2838156 -139433288 + L1MC4 LINE L1 6653 6703 -1339 255 81 27 0 chr9 2838460 2838497 -139432947 - tRNA-Ser-TCC tRNA tRNA -44 41 4 1843 181 0 0 chr9 2838695 2838988 -139432456 + AluJb SINE Alu 1 293 -19 1376 286 46 52 chr9 2838990 2839424 -139432020 + MER21B LTR ERV1 20 450 -413 2183 97 0 0 chr9 2839424 2839712 -139431732 - AluY SINE Alu -23 288 1 1376 286 46 52 chr9 2839712 2839976 -139431468 + MER21B LTR ERV1 450 714 -149 689 218 20 27 chr9 2840078 2840225 -139431219 + MER69 DNA AcHobo 2 147 -1079 735 249 150 48 chr9 2841098 2841492 -139429952 + MLT1J1 LTR MaLR 1 434 -12 312 320 126 48 chr9 2841823 2842132 -139429312 + L3 LINE CR1 1237 1569 -8 274 205 96 36 chr9 2842790 2842873 -139428571 - L2 LINE L2 -1 3271 3184 2289 107 0 0 chr9 2843059 2843359 -139428085 + AluSx SINE Alu 1 300 -12 379 175 164 22 chr9 2844297 2844423 -139427021 + MIR3 SINE MIR 61 202 -6 200 213 33 49 chr9 2844505 2844566 -139426878 + MIR3 SINE MIR 134 193 -15 501 269 143 45 chr9 2848273 2848581 -139422863 + MER102b DNA MER1_type 3 340 -1 844 248 71 65 chr9 2848863 2849186 -139422258 - MER102a DNA MER1_type -5 325 1 274 309 148 27 chr9 2849626 2849775 -139421669 + MIR SINE MIR 47 213 -49 23 33 0 0 chr9 2850014 2850044 -139421400 + AT_rich Low_complexity Low_complexity 1 30 0 408 200 0 12 chr9 2851662 2851742 -139419702 + Tigger5 DNA MER2_type 1 79 -2244 389 143 0 0 chr9 2851773 2851836 -139419608 + Tigger5 DNA MER2_type 2261 2323 0 186 43 0 0 chr9 2853495 2853518 -139417926 + (CA)n Simple_repeat Simple_repeat 1 23 0 453 235 71 77 chr9 2853593 2853916 -139417528 + L1ME4a LINE L1 5531 5851 -270 229 317 158 17 chr9 2854267 2854387 -139417057 + L2 LINE L2 3119 3255 -17 364 250 22 0 chr9 2854926 2855018 -139416426 - MER58 DNA MER1_type -2326 94 1 321 262 24 0 chr9 2856646 2856730 -139414714 + L2 LINE L2 3183 3268 -4 184 313 78 55 chr9 2857036 2857164 -139414280 + MER5B DNA MER1_type 27 157 -21 1990 150 0 16 chr9 2857327 2857641 -139413803 - AluJb SINE Alu 0 312 4 417 281 128 18 chr9 2857943 2858107 -139413337 + MIR SINE MIR 81 262 0 3873 141 15 3 chr9 2860439 2861051 -139410393 + LTR31 LTR ERV1 1 619 0 2028 103 33 0 chr9 2861231 2861535 -139409909 + AluSx SINE Alu 1 313 0 38 61 0 0 chr9 2861698 2861764 -139409680 + AT_rich Low_complexity Low_complexity 1 66 0 220 372 12 12 chr9 2862399 2862485 -139408959 + L2 LINE L2 3129 3214 -58 289 283 31 101 chr9 2862659 2862818 -139408626 + MIR SINE MIR 114 261 -1 2197 99 0 26 chr9 2863311 2863615 -139407829 + AluSx SINE Alu 17 312 0 32 26 0 0 chr9 2864394 2864433 -139407011 + AT_rich Low_complexity Low_complexity 1 39 0 203 302 0 0 chr9 2864927 2864980 -139406464 + L2 LINE L2 3261 3313 0 227 79 26 0 chr9 2865148 2865186 -139406258 + (TC)n Simple_repeat Simple_repeat 2 40 0 237 65 0 0 chr9 2865186 2865217 -139406227 + (CA)n Simple_repeat Simple_repeat 1 31 0 319 241 38 13 chr9 2865292 2865371 -139406073 - L2 LINE L2 -8 3305 3225 893 215 21 0 chr9 2865500 2865686 -139405758 + MER58A DNA MER1_type 35 224 0 667 292 23 88 chr9 2865695 2866126 -139405318 - L2 LINE L2 -218 3054 2649 311 0 26 0 chr9 2866677 2866716 -139404728 + (CA)n Simple_repeat Simple_repeat 2 41 0 2021 141 39 33 chr9 2867688 2868050 -139403394 + THE1B LTR MaLR 1 364 0 23 54 0 0 chr9 2868074 2868111 -139403333 + AT_rich Low_complexity Low_complexity 1 37 0 1965 147 7 7 chr9 2868128 2868428 -139403016 - AluSx SINE Alu -12 300 1 254 330 48 10 chr9 2869734 2869837 -139401607 - MIR SINE MIR -107 155 49 1970 100 30 40 chr9 2869886 2870187 -139401257 - AluSq SINE Alu -15 298 1 2333 88 0 0 chr9 2873465 2873760 -139397684 + AluSg SINE Alu 1 295 -15 383 122 22 33 chr9 2873817 2873907 -139397537 - L1MA9 LINE L1 -17 6295 6207 481 328 20 10 chr9 2874018 2874219 -139397225 - MIR SINE MIR -7 255 53 458 233 112 99 chr9 2875094 2875567 -139395877 - Charlie7 DNA MER1_type -2086 526 48 2399 238 40 42 chr9 2876971 2877749 -139393695 + L1ME1 LINE L1 5374 6149 -17 534 285 95 18 chr9 2878229 2878450 -139392994 - MIR SINE MIR -12 250 13 28 29 0 0 chr9 2879948 2879983 -139391461 + AT_rich Low_complexity Low_complexity 1 35 0 244 298 21 21 chr9 2882197 2882291 -139389153 - MIR3 SINE MIR -2 206 113 258 274 71 0 chr9 2882547 2882660 -139388784 + Charlie8 DNA MER1_type 44 164 -2253 23 0 0 0 chr9 2883314 2883337 -139388107 + AT_rich Low_complexity Low_complexity 1 23 0 423 0 0 0 chr9 2884431 2884478 -139386966 + (CA)n Simple_repeat Simple_repeat 2 48 0 405 0 0 0 chr9 2886497 2886542 -139384902 + (CA)n Simple_repeat Simple_repeat 1 45 0 218 348 59 30 chr9 2887857 2887992 -139383452 - L2 LINE L2 0 3313 3175 1039 228 39 4 chr9 2889195 2889427 -139382017 + Charlie1a DNA MER1_type 1 240 -1215 255 222 0 0 chr9 2889558 2889621 -139381823 + MER103 DNA DNA 8 70 -96 249 250 113 40 chr9 2889709 2889833 -139381611 - MER94 DNA DNA -1 133 1 2290 103 3 3 chr9 2889875 2890186 -139381258 - AluY SINE Alu 0 311 1 2211 128 0 3 chr9 2890353 2890659 -139380785 - AluSx SINE Alu -7 305 1 395 297 39 39 chr9 2891375 2891530 -139379914 - MIR SINE MIR -76 186 32 197 160 0 40 chr9 2892281 2892331 -139379113 + GA-rich Low_complexity Low_complexity 3 50 0 1218 124 0 0 chr9 2893027 2893204 -139378240 + AluSq SINE Alu 137 313 0 1906 147 7 0 chr9 2893985 2894264 -139377180 - AluJb SINE Alu -31 281 1 636 273 164 49 chr9 2895697 2896185 -139375259 + LTR67 LTR ERVL 3 546 -11 22 35 0 0 chr9 2897983 2898012 -139373432 + AT_rich Low_complexity Low_complexity 1 29 0 1260 133 10 0 chr9 2898870 2899073 -139372371 + L1PA16 LINE L1 5962 6166 0 2110 46 0 11 chr9 2899272 2899535 -139371909 - AluY SINE Alu -12 299 40 2385 77 0 0 chr9 2899782 2900079 -139371365 + AluY SINE Alu 1 297 -14 379 275 23 105 chr9 2901261 2901432 -139370012 + MIR SINE MIR 29 185 -77 523 202 9 9 chr9 2901593 2901702 -139369742 + L2 LINE L2 3205 3313 0 2362 68 0 3 chr9 2903803 2904095 -139367349 - AluY SINE Alu -20 291 1 523 303 0 0 chr9 2904536 2904678 -139366766 - MIR SINE MIR -6 256 115 318 268 94 79 chr9 2906190 2906317 -139365127 + L2 LINE L2 3137 3265 -7 23 0 0 0 chr9 2906761 2906784 -139364660 + AT_rich Low_complexity Low_complexity 1 23 0 310 185 0 0 chr9 2906800 2906865 -139364579 - L1MB3 LINE L1 -28 6155 6091 203 182 0 0 chr9 2908011 2908044 -139363400 + polypyrimidine Low_complexity Low_complexity 2 34 0 394 258 61 25 chr9 2908549 2908747 -139362697 - L1MC5 LINE L1 -54 7907 7703 288 0 0 0 chr9 2908847 2908879 -139362565 + (T)n Simple_repeat Simple_repeat 1 32 0 1862 194 11 14 chr9 2911541 2911907 -139359537 + MLT1A1 LTR MaLR 1 365 0 344 302 31 16 chr9 2911910 2912039 -139359405 + MIR3 SINE MIR 56 186 -22 260 280 93 104 chr9 2915385 2915578 -139355866 - MIR SINE MIR -48 214 24 2282 111 11 3 chr9 2915672 2916022 -139355422 + L1PA16 LINE L1 5805 6157 -9 2257 93 0 7 chr9 2916504 2916806 -139354638 - AluSx SINE Alu -12 300 1 192 77 0 0 chr9 2918649 2918675 -139352769 + (A)n Simple_repeat Simple_repeat 1 26 0 290 282 174 0 chr9 2920572 2920721 -139350723 - MIR SINE MIR -71 191 17 865 172 96 24 chr9 2920784 2920993 -139350451 + MER58A DNA MER1_type 1 224 0 42 48 0 0 chr9 2921657 2921720 -139349724 + GC_rich Low_complexity Low_complexity 1 63 0 29 70 0 0 chr9 2921797 2921854 -139349590 + GC_rich Low_complexity Low_complexity 1 57 0 329 297 39 8 chr9 2921890 2922018 -139349426 + GA-rich Low_complexity Low_complexity 4 135 0 189 307 136 0 chr9 2923024 2923112 -139348332 + L3b LINE CR1 1327 1426 -157 353 69 0 17 chr9 2923118 2923176 -139348268 + (TG)n Simple_repeat Simple_repeat 1 57 0 335 362 98 11 chr9 2923497 2923671 -139347773 + L3b LINE CR1 1392 1580 -3 662 239 0 7 chr9 2924283 2924425 -139347019 + MIR SINE MIR 58 198 -64 389 256 23 0 chr9 2926977 2927063 -139344381 + MIR SINE MIR 2 89 -173 2122 167 6 8 chr9 2927379 2927745 -139343699 + MLT1A1 LTR MaLR 1 365 0 657 129 0 0 chr9 2929127 2929243 -139342201 + (CTG)n Simple_repeat Simple_repeat 3 118 0 1105 150 59 24 chr9 2929706 2929960 -139341484 - MER33 DNA MER1_type -32 292 30 181 238 24 0 chr9 2930140 2930182 -139341262 - L2 LINE L2 -21 3292 3250 790 302 21 11 chr9 2930203 2930488 -139340956 - LTR16C LTR ERVL -9 482 195 489 303 45 11 chr9 2930661 2930839 -139340605 - MIR SINE MIR -59 203 20 303 71 0 0 chr9 2932778 2932820 -139338624 + (CA)n Simple_repeat Simple_repeat 2 43 0 2215 97 0 3 chr9 2933655 2933989 -139337455 + AluSx SINE Alu 1 333 0 1651 190 72 43 chr9 2934643 2934731 -139336713 + MLT1C LTR MaLR 1 85 -382 2355 86 3 0 chr9 2934731 2935033 -139336411 - AluSc SINE Alu -6 303 1 1651 190 72 43 chr9 2935033 2935386 -139336058 + MLT1C LTR MaLR 85 455 -12 322 351 73 26 chr9 2935508 2935699 -139335745 + MIR SINE MIR 35 234 -28 278 26 26 0 chr9 2936246 2936285 -139335159 + (TTTG)n Simple_repeat Simple_repeat 4 43 0 331 316 35 29 chr9 2937761 2937932 -139333512 + L1MC4a LINE L1 5802 5973 -1835 2045 142 18 161 chr9 2938243 2938850 -139332594 + MLT2B1 LTR ERVL 1 520 0 233 283 123 9 chr9 2941371 2941477 -139329967 + L2 LINE L2 3191 3308 -5 1767 151 16 16 chr9 2941533 2941838 -139329606 - AluJo SINE Alu -7 305 1 310 304 126 0 chr9 2942845 2942980 -139328464 + MIR3 SINE MIR 32 183 -25 184 311 59 37 chr9 2944117 2944252 -139327192 - MIR3 SINE MIR -41 167 30 256 254 0 17 chr9 2946582 2946641 -139324803 + MIR SINE MIR 98 155 -107 23 0 0 0 chr9 2951308 2951331 -139320113 + GC_rich Low_complexity Low_complexity 1 23 0 189 0 0 0 chr9 2955873 2955894 -139315550 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 2146 125 0 0 chr9 2956917 2957220 -139314224 - AluSx SINE Alu -9 303 1 237 33 0 0 chr9 2957968 2957998 -139313446 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 355 225 163 31 chr9 2958177 2958306 -139313138 - MIR SINE MIR -28 234 89 1180 250 72 88 chr9 2958306 2958684 -139312760 + Charlie7 DNA MER1_type 1 384 -2228 2509 55 3 0 chr9 2958684 2958992 -139312452 - AluY SINE Alu -2 309 1 1180 250 72 88 chr9 2958992 2959198 -139312246 + Charlie7 DNA MER1_type 384 573 -2039 2228 105 3 16 chr9 2959198 2959512 -139311932 + AluSq SINE Alu 1 310 -3 1180 250 72 88 chr9 2959512 2959661 -139311783 + Charlie7 DNA MER1_type 573 723 -1889 402 153 137 8 chr9 2959659 2959783 -139311661 + Charlie7 DNA MER1_type 2432 2571 -41 * 225 65 0 0 chr9 2959783 2959814 -139311630 + (T)n Simple_repeat Simple_repeat 1 31 0 2289 88 3 0 chr9 2962319 2962614 -139308830 + AluSg SINE Alu 1 296 -14 333 0 0 0 chr9 2964017 2964054 -139307390 + (CCCTAA)n Simple_repeat Simple_repeat 5 41 0 22 0 0 0 chr9 2964177 2964199 -139307245 + AT_rich Low_complexity Low_complexity 1 22 0 248 200 0 27 chr9 2964346 2964421 -139307023 - L1ME4a LINE L1 -2 6119 6047 24 0 0 0 chr9 2965520 2965544 -139305900 + AT_rich Low_complexity Low_complexity 1 24 0 768 204 250 24 chr9 2965654 2965982 -139305462 - L1M4 LINE L1 -3248 2898 2497 1183 286 66 29 chr9 2966072 2966632 -139304812 - L1MC4a LINE L1 -1899 5909 5324 2453 76 0 0 chr9 2966632 2966935 -139304509 - AluY SINE Alu -8 303 1 1183 286 66 29 chr9 2966935 2966965 -139304479 - L1MC4a LINE L1 -2484 5324 5297 413 239 77 26 chr9 2967063 2967180 -139304264 + MARNA DNA Mariner 286 408 -178 206 261 31 0 chr9 2967524 2967589 -139303855 + (TATG)n Simple_repeat Simple_repeat 4 70 0 398 274 98 72 chr9 2970510 2970605 -139300839 - L1ME4a LINE L1 -223 5947 5856 931 240 34 5 chr9 2970605 2970813 -139300631 - MER58C DNA MER1_type 0 215 2 398 274 98 72 chr9 2970813 2971035 -139300409 - L1ME4a LINE L1 -314 5856 5622 266 222 111 127 chr9 2971368 2971557 -139299887 - MER102a DNA MER1_type 0 330 145 683 189 47 30 chr9 2971561 2971730 -139299714 - L1MB2 LINE L1 0 6171 6000 296 339 18 0 chr9 2972479 2972591 -139298853 - MIR SINE MIR -70 192 79 252 0 0 0 chr9 2973358 2973386 -139298058 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 2191 118 3 0 chr9 2973587 2973883 -139297561 + AluSx SINE Alu 1 297 -15 242 329 24 0 chr9 2974173 2974255 -139297189 + MIR SINE MIR 179 262 0 222 329 200 0 chr9 2974538 2974678 -139296766 + MIR3 SINE MIR 20 187 -21 246 94 0 0 chr9 2975581 2975613 -139295831 + U6 snRNA snRNA 1 32 -75 753 212 35 6 chr9 2975894 2976064 -139295380 - MER5A DNA MER1_type -11 178 4 189 148 0 0 chr9 2976250 2976277 -139295167 + L2 LINE L2 3263 3289 -24 210 143 0 0 chr9 2976450 2976485 -139294959 - MIR SINE MIR -14 248 214 1291 267 122 13 chr9 2979176 2979554 -139291890 - MLT1G1 LTR MaLR -176 419 1 1822 161 10 22 chr9 2980643 2980954 -139290490 - AluJo SINE Alu -5 307 1 2363 82 0 0 chr9 2981049 2981342 -139290102 - AluY SINE Alu -18 293 1 487 110 0 0 chr9 2982097 2982170 -139289274 + Alu SINE Alu 235 307 -3 501 224 179 0 chr9 2982922 2983078 -139288366 - MIR SINE MIR -76 186 3 452 219 67 37 chr9 2983265 2983444 -139288000 - MER104 DNA Tc2 -3 177 1 2462 57 7 0 chr9 2983657 2983958 -139287486 + AluY SINE Alu 1 303 -8 240 221 0 73 chr9 2983961 2983997 -139287447 + Tigger5 DNA MER2_type 1 31 -335 2023 141 0 0 chr9 2983997 2984281 -139287163 - AluSx SINE Alu -16 296 13 240 221 0 73 chr9 2984281 2984312 -139287132 + Tigger5 DNA MER2_type 31 63 -303 2315 56 10 3 chr9 2985338 2985626 -139285818 + AluY SINE Alu 1 290 -21 284 284 210 62 chr9 2986279 2986779 -139284665 + HAL1 LINE L1 1 574 -1933 291 274 146 46 chr9 2986802 2987152 -139284292 + HAL1 LINE L1 654 1038 -1469 1118 209 25 4 chr9 2987173 2987408 -139284036 + AluJb SINE Alu 68 307 -5 1389 250 113 53 chr9 2987411 2988094 -139283350 + HAL1 LINE L1 1095 1818 -689 814 190 42 60 chr9 2988211 2988427 -139283017 - MLT1L LTR MaLR -7 608 397 644 256 207 33 chr9 2988851 2989301 -139282143 + HAL1 LINE L1 1956 2483 -24 192 287 35 46 chr9 2990228 2990315 -139281129 + L2 LINE L2 3019 3104 -168 188 178 67 67 chr9 2991063 2991108 -139280336 + L2 LINE L2 3142 3186 -86 728 266 13 42 chr9 2991269 2991506 -139279938 + MIR SINE MIR 30 259 -3 488 320 136 19 chr9 2991963 2992169 -139279275 - MIR SINE MIR -15 247 18 281 33 101 0 chr9 2992548 2992592 -139278852 + MLT2A1 LTR ERVL 402 444 0 * 419 205 68 43 chr9 2992592 2992708 -139278736 - LTR8 LTR ERV1 -572 119 1 388 300 7 57 chr9 2992738 2992878 -139278566 - MIR3 SINE MIR -31 177 45 2234 117 45 48 chr9 2994000 2994376 -139277068 - THE1C LTR MaLR 0 375 1 988 198 82 97 chr9 2994449 2994903 -139276541 - LTR37B LTR ERV1 -16 452 6 313 338 76 6 chr9 2995049 2995206 -139276238 - MIR SINE MIR -55 207 40 2213 92 0 0 chr9 2995295 2995577 -139275867 + AluY SINE Alu 1 282 -29 210 143 0 0 chr9 3097061 3097096 -139174348 + MIR SINE MIR 214 248 -14 188 148 0 0 chr9 3097269 3097296 -139174148 - L2 LINE L2 -24 3289 3263 229 94 0 0 chr9 3097763 3097795 -139173649 - U6 snRNA snRNA -75 32 1 216 329 200 0 chr9 3098698 3098838 -139172606 - MIR3 SINE MIR -21 187 20 243 329 24 0 chr9 3099121 3099203 -139172241 - MIR SINE MIR 0 262 179 2195 118 3 0 chr9 3099493 3099789 -139171655 - AluSx SINE Alu -15 297 1 252 0 0 0 chr9 3099990 3100018 -139171426 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 307 339 18 0 chr9 3100785 3100897 -139170547 + MIR SINE MIR 79 192 -70 588 138 62 8 chr9 3101683 3101813 -139169631 + L1MB2 LINE L1 6033 6169 -2 312 298 93 15 chr9 3102453 3102562 -139168882 + L1ME3A LINE L1 5727 5826 -344 843 240 34 5 chr9 3102562 3102770 -139168674 + MER58C DNA MER1_type 2 215 0 312 298 93 15 chr9 3102770 3102865 -139168579 + L1ME3A LINE L1 5826 5947 -223 206 261 31 0 chr9 3105786 3105851 -139165593 + (CATA)n Simple_repeat Simple_repeat 4 70 0 366 239 77 26 chr9 3106195 3106312 -139165132 - MARNA DNA Mariner -178 408 286 961 289 66 29 chr9 3106410 3106440 -139165004 + L1MC4a LINE L1 5297 5324 -2484 2382 82 0 0 chr9 3106440 3106743 -139164701 + AluY SINE Alu 1 303 -8 961 289 66 29 chr9 3106743 3107303 -139164141 + L1MC4a LINE L1 5324 5909 -1899 671 236 94 29 chr9 3107393 3107669 -139163775 + L1M4 LINE L1 2497 2790 -3356 24 0 0 0 chr9 3107831 3107855 -139163589 + AT_rich Low_complexity Low_complexity 1 24 0 262 143 14 100 chr9 3107959 3108099 -139163345 + (TTATA)n Simple_repeat Simple_repeat 1 128 0 22 0 0 0 chr9 3109177 3109199 -139162245 + AT_rich Low_complexity Low_complexity 1 22 0 333 0 0 0 chr9 3109322 3109359 -139162085 + (TTAGGG)n Simple_repeat Simple_repeat 5 41 0 2277 88 3 0 chr9 3110761 3111056 -139160388 - AluSg SINE Alu -14 296 1 22 35 0 0 chr9 3112106 3112135 -139159309 + AT_rich Low_complexity Low_complexity 1 29 0 902 197 53 61 chr9 3113028 3113256 -139158188 - MIR SINE MIR -30 232 7 1698 188 7 16 chr9 3113309 3113617 -139157827 - AluJo SINE Alu -7 305 1 301 215 89 13 chr9 3115332 3115411 -139156033 + MIR SINE MIR 178 262 0 321 272 88 24 chr9 3117483 3117608 -139153836 - MIR SINE MIR -12 250 118 192 284 68 14 chr9 3117707 3117781 -139153663 + MIR SINE MIR 185 262 0 593 296 35 6 chr9 3119852 3120021 -139151423 - MIR SINE MIR -41 221 48 192 77 0 0 chr9 3120290 3120316 -139151128 + (A)n Simple_repeat Simple_repeat 1 26 0 1868 151 13 23 chr9 3120407 3120706 -139150738 + AluJb SINE Alu 1 296 -16 264 264 103 35 chr9 3121922 3122009 -139149435 + L2 LINE L2 3149 3241 -31 222 37 0 0 chr9 3122076 3122103 -139149341 + (TG)n Simple_repeat Simple_repeat 2 28 0 501 134 47 12 chr9 3125114 3125284 -139146160 - L1MD3 LINE L1 -13 7982 7755 2992 204 58 133 chr9 3125311 3125545 -139145899 - L1MD3 LINE L1 -346 7462 7212 331 269 65 0 chr9 3125545 3125653 -139145791 - MLT1F1 LTR MaLR -452 115 1 2992 204 58 133 chr9 3125653 3126577 -139144867 - L1MD3 LINE L1 -596 7212 6291 1776 133 68 11 chr9 3126583 3126847 -139144597 + AluSx SINE Alu 7 285 -27 494 284 14 14 chr9 3126847 3126988 -139144456 - L1MD3 LINE L1 -701 7294 7154 993 260 66 27 chr9 3127004 3127411 -139144033 - L1MC3 LINE L1 -1500 6285 5863 802 264 60 87 chr9 3127840 3128276 -139143168 + L2 LINE L2 2105 2528 -786 252 333 49 24 chr9 3128423 3128546 -139142898 + L2 LINE L2 2746 2871 -443 2682 36 0 0 chr9 3128847 3129154 -139142290 - AluY SINE Alu -4 307 1 391 288 106 7 chr9 3129760 3129962 -139141482 + MIR SINE MIR 2 262 0 191 77 0 0 chr9 3130038 3130064 -139141380 - MIR SINE MIR -117 145 120 968 226 102 37 chr9 3130065 3130468 -139140976 - MLT1C LTR MaLR -33 434 6 180 247 173 12 chr9 3130692 3130773 -139140671 - MIR SINE MIR -42 220 127 461 264 39 0 chr9 3131544 3131673 -139139771 + MIR SINE MIR 81 214 -48 2134 118 7 3 chr9 3131742 3132047 -139139397 + AluSx SINE Alu 1 306 -6 370 294 115 23 chr9 3132051 3132269 -139139175 - MLT1L LTR MaLR -18 597 360 509 283 88 0 chr9 3132606 3132765 -139138679 - MER5B DNA MER1_type -2 176 4 2066 108 35 0 chr9 3132789 3133077 -139138367 - AluSx SINE Alu -14 298 1 5775 53 10 3 chr9 3134222 3134951 -139136493 + L1PA5 LINE L1 5420 6153 -1 786 156 7 22 chr9 3135071 3135206 -139136238 - FLAM_C SINE Alu 0 133 1 762 364 24 12 chr9 3135259 3135685 -139135759 - LTR16B LTR ERVL 0 464 34 1763 349 31 35 chr9 3135750 3137179 -139134265 - ERVL LTR ERVL -17 5317 3979 689 287 7 6 chr9 3137208 3137495 -139133949 - ERVL LTR ERVL -2852 2912 2565 1082 270 59 23 chr9 3137515 3137956 -139133488 - HERV16 LTR ERVL -3855 1141 685 1246 276 53 29 chr9 3137983 3138436 -139133008 - LTR16C LTR ERVL -27 464 1 3351 153 23 22 chr9 3138759 3139296 -139132148 + MER7C DNA MER2_type 1 541 -2487 2571 58 0 0 chr9 3139296 3139604 -139131840 - AluY SINE Alu -3 308 1 3351 153 23 22 chr9 3139604 3139667 -139131777 + MER7C DNA MER2_type 541 602 0 317 284 30 8 chr9 3140778 3140912 -139130532 + GA-rich Low_complexity Low_complexity 5 141 0 1761 162 10 23 chr9 3140915 3141217 -139130227 + AluJo SINE Alu 1 298 -14 337 174 0 23 chr9 3141217 3141303 -139130141 + GA-rich Low_complexity Low_complexity 2 85 0 1353 267 144 11 chr9 3141840 3142501 -139128943 - L2 LINE L2 -2 3311 2549 1115 242 11 0 chr9 3143323 3143596 -139127848 - Charlie4a DNA MER1_type -32 476 201 21 82 0 0 chr9 3143613 3143662 -139127782 + AT_rich Low_complexity Low_complexity 1 49 0 200 315 0 0 chr9 3143668 3143722 -139127722 + T-rich Low_complexity Low_complexity 2 55 0 2211 119 3 3 chr9 3143738 3144050 -139127394 + AluSq SINE Alu 1 312 -1 39 22 0 0 chr9 3144061 3144107 -139127337 + AT_rich Low_complexity Low_complexity 1 46 0 258 56 0 0 chr9 3144109 3144145 -139127299 + (TA)n Simple_repeat Simple_repeat 2 37 0 1739 187 0 13 chr9 3144370 3144670 -139126774 + AluJo SINE Alu 4 299 -13 213 163 0 0 chr9 3144766 3144815 -139126629 + (TA)n Simple_repeat Simple_repeat 2 50 0 23 0 0 0 chr9 3144843 3144866 -139126578 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr9 3144916 3144946 -139126498 + AT_rich Low_complexity Low_complexity 1 30 0 342 354 161 32 chr9 3144975 3145447 -139125997 + L3 LINE CR1 1 533 -1044 466 350 75 52 chr9 3145606 3146141 -139125303 + L3 LINE CR1 980 1526 -51 2287 94 0 3 chr9 3146213 3146510 -139124934 + AluSq SINE Alu 6 301 -12 29 60 0 0 chr9 3146746 3146796 -139124648 + AT_rich Low_complexity Low_complexity 1 50 0 180 262 24 0 chr9 3146811 3146853 -139124591 + L3 LINE CR1 1533 1575 -2 257 172 151 0 chr9 3147188 3147281 -139124163 - L1ME LINE L1 -374 5788 5682 21 0 0 0 chr9 3147315 3147336 -139124108 + AT_rich Low_complexity Low_complexity 1 21 0 252 311 67 17 chr9 3147618 3147737 -139123707 - L1ME3A LINE L1 -28 6142 6018 2495 152 16 28 chr9 3148735 3149168 -139122276 + MSTA LTR MaLR 1 428 0 2654 92 20 8 chr9 3149232 3149625 -139121819 + L1PA13 LINE L1 5764 6161 -2 248 267 187 0 chr9 3150751 3150826 -139120618 - L1ME LINE L1 -521 5600 5512 2137 91 0 70 chr9 3151419 3151604 -139119840 - AluSg SINE Alu -4 306 152 207 0 0 0 chr9 3151604 3151627 -139119817 + (TA)n Simple_repeat Simple_repeat 2 24 0 2137 91 0 70 chr9 3151627 3151770 -139119674 - AluSg SINE Alu -158 152 1 1899 176 47 29 chr9 3152594 3153002 -139118442 - MLT1C LTR MaLR -2 465 51 180 0 0 0 chr9 3153020 3153040 -139118404 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 2269 87 10 10 chr9 3153047 3153347 -139118097 - AluSc SINE Alu -9 300 1 1910 100 46 0 chr9 3153347 3153608 -139117836 - L1PA15 LINE L1 -12 6153 5881 340 323 43 18 chr9 3156161 3156244 -139115200 - MIR SINE MIR -32 230 151 1585 140 23 57 chr9 3156244 3156544 -139114900 - AluJo SINE Alu -10 302 13 340 323 43 18 chr9 3156544 3156624 -139114820 - MIR SINE MIR -111 151 63 368 314 36 6 chr9 3157096 3157267 -139114177 + MIR SINE MIR 40 213 -49 189 273 23 0 chr9 3157326 3157370 -139114074 - L2 LINE L2 -86 3186 3142 302 361 87 21 chr9 3157458 3157699 -139113745 + L3 LINE CR1 1273 1529 -48 287 310 120 6 chr9 3157799 3157957 -139113487 + L2 LINE L2 2222 2397 -917 204 239 0 22 chr9 3158680 3158726 -139112718 + (TAGG)n Simple_repeat Simple_repeat 2 46 0 194 62 31 0 chr9 3159303 3159335 -139112109 + (CA)n Simple_repeat Simple_repeat 1 33 0 267 336 9 0 chr9 3161523 3161633 -139109811 + CT-rich Low_complexity Low_complexity 4 114 0 1730 298 132 24 chr9 3163263 3164130 -139107314 + L2 LINE L2 1735 2694 -620 395 276 124 39 chr9 3164153 3164410 -139107034 + L2 LINE L2 2923 3201 -112 1080 279 19 52 chr9 3164433 3164856 -139106588 - MLT1I LTR MaLR 0 409 1 186 239 43 0 chr9 3164857 3164903 -139106541 + L2 LINE L2 3265 3312 -1 322 260 67 0 chr9 3165472 3165576 -139105868 - MIR SINE MIR -48 214 104 634 197 170 0 chr9 3165974 3166121 -139105323 + MER5A DNA MER1_type 9 180 -9 193 260 13 65 chr9 3166066 3166143 -139105301 - MER5A DNA MER1_type -114 75 3 * 201 147 0 0 chr9 3166740 3166774 -139104670 + (TGAA)n Simple_repeat Simple_repeat 2 35 0 510 343 59 9 chr9 3167167 3167386 -139104058 - MIR SINE MIR -31 231 2 536 113 0 0 chr9 3167521 3167592 -139103852 + AluY SINE Alu 13 83 -227 374 319 125 7 chr9 3167592 3167736 -139103708 + MER45C DNA AcHobo 440 600 -353 1453 72 88 5 chr9 3167796 3167989 -139103455 + AluSc SINE Alu 85 293 -16 1160 163 59 0 chr9 3168226 3168447 -139102997 - L1MA4 LINE L1 -5 6295 6062 3070 90 10 15 chr9 3168476 3168887 -139102557 - L1PA10 LINE L1 -5 6163 5755 1687 292 102 30 chr9 3169084 3169660 -139101784 + MER45C DNA AcHobo 16 633 -320 270 254 0 0 chr9 3169655 3169710 -139101734 + MER45C DNA AcHobo 899 953 0 * 230 271 0 29 chr9 3170014 3170084 -139101360 - L2 LINE L2 0 3313 3246 546 284 82 16 chr9 3170252 3170509 -139100935 + MLT1L LTR MaLR 3 276 -339 669 228 64 0 chr9 3170529 3170700 -139100744 + MIR SINE MIR 17 198 -64 14342 230 48 7 chr9 3170703 3174587 -139096857 + L1PA16 LINE L1 1485 5525 -641 2645 136 18 0 chr9 3174587 3174974 -139096470 + L1PA16 LINE L1 5760 6157 -9 1461 178 73 0 chr9 3174997 3175272 -139096172 - AluJo SINE Alu -17 295 1 237 237 17 0 chr9 3175395 3175454 -139095990 + MIR SINE MIR 186 245 -17 611 235 72 21 chr9 3175570 3175789 -139095655 + MLT1L LTR MaLR 266 601 -14 310 106 43 0 chr9 3176053 3176100 -139095344 - MLT2C2 LTR ERVL 0 464 416 240 200 0 0 chr9 3176144 3176199 -139095245 + (TA)n Simple_repeat Simple_repeat 2 56 0 2024 169 118 25 chr9 3176199 3176638 -139094806 - MLT2B1 LTR ERVL -40 480 1 419 271 66 12 chr9 3177101 3177267 -139094177 + MER117 DNA MER1_type 13 187 -10 426 312 35 70 chr9 3177364 3177733 -139093711 - L2 LINE L2 0 3272 2917 44270 43 3 11 chr9 3178284 3182572 -139088872 - L1PA4 LINE L1 0 6155 1928 7929 36 1 0 chr9 3182572 3183591 -139087853 + L1PA3 LINE L1 5132 6152 -3 44270 43 3 11 chr9 3183591 3185504 -139085940 - L1PA4 LINE L1 -4227 1928 3 21 0 0 0 chr9 3185525 3185546 -139085898 + AT_rich Low_complexity Low_complexity 1 21 0 202 328 15 0 chr9 3186533 3186600 -139084844 + CT-rich Low_complexity Low_complexity 5 72 0 289 322 76 18 chr9 3186755 3186926 -139084518 + L2 LINE L2 2881 3061 -252 638 189 39 71 chr9 3186966 3187206 -139084238 - L1MC4 LINE L1 -18 6148 5979 1244 184 0 0 chr9 3187213 3187419 -139084025 - AluJb SINE Alu -15 297 92 2651 220 50 54 chr9 3187419 3188640 -139082804 - L1ME1 LINE L1 -199 5967 4724 1792 155 6 43 chr9 3188703 3189026 -139082418 - AluJb SINE Alu -1 311 1 397 262 28 19 chr9 3189080 3189187 -139082257 + L2 LINE L2 3205 3312 -1 270 362 28 28 chr9 3189822 3189999 -139081445 + L2 LINE L2 3099 3275 -38 211 203 188 16 chr9 3190517 3190581 -139080863 - MIR SINE MIR -10 252 178 391 236 112 45 chr9 3191106 3191284 -139080160 - MIR SINE MIR -6 256 67 373 280 61 23 chr9 3191944 3192076 -139079368 - MIR3 SINE MIR -22 186 50 387 279 111 68 chr9 3193015 3193591 -139077853 - L1ME4a LINE L1 -2 6119 5519 1370 216 17 11 chr9 3193593 3193880 -139077564 - AluJo SINE Alu -20 292 4 230 208 132 0 chr9 3194038 3194091 -139077353 + L1MC3 LINE L1 7481 7540 -245 244 261 34 11 chr9 3195481 3195569 -139075875 + Charlie7 DNA MER1_type 1 90 -2522 1207 256 62 9 chr9 3195591 3195931 -139075513 + MLT1C LTR MaLR 6 363 -104 22 56 0 0 chr9 3195957 3195993 -139075451 + AT_rich Low_complexity Low_complexity 1 36 0 321 283 9 9 chr9 3196778 3196884 -139074560 + (TATATG)n Simple_repeat Simple_repeat 2 107 0 459 0 0 0 chr9 3196887 3196938 -139074506 + (TG)n Simple_repeat Simple_repeat 2 52 0 311 248 8 34 chr9 3196974 3197091 -139074353 + Charlie7 DNA MER1_type 2498 2611 -1 255 288 32 64 chr9 3197636 3197761 -139073683 - MIR SINE MIR -128 134 14 207 100 0 0 chr9 3198353 3198383 -139073061 + (T)n Simple_repeat Simple_repeat 1 30 0 223 286 0 0 chr9 3198383 3198439 -139073005 + L3 LINE CR1 256 311 -1266 244 273 36 95 chr9 3199216 3199469 -139071975 + L1MC4a LINE L1 5802 6039 -1769 1035 350 119 25 chr9 3199485 3200504 -139070940 + L3 LINE CR1 298 1411 -166 748 324 68 39 chr9 3200523 3201036 -139070408 + L1MC4a LINE L1 5377 5904 -1904 324 209 30 0 chr9 3201229 3201296 -139070148 + L3 LINE CR1 1399 1467 -110 2105 117 3 7 chr9 3202250 3202548 -139068896 + AluSg SINE Alu 1 297 -13 268 318 26 3 chr9 3202548 3202703 -139068741 - MIR SINE MIR -15 247 49 796 158 8 24 chr9 3203292 3203419 -139068025 - AluJo SINE Alu -105 207 83 22 35 0 0 chr9 3203422 3203451 -139067993 + AT_rich Low_complexity Low_complexity 1 29 0 295 273 39 47 chr9 3205199 3205327 -139066117 + MIR SINE MIR 78 204 -58 399 338 25 25 chr9 3205589 3205749 -139065695 + L2 LINE L2 3110 3269 -3 951 332 47 3 chr9 3205875 3206258 -139065186 + MLT1I LTR MaLR 3 402 -7 225 303 30 0 chr9 3206588 3206654 -139064790 + MIR SINE MIR 186 253 -9 479 261 49 35 chr9 3206729 3206871 -139064573 + MIR SINE MIR 8 151 -111 184 217 150 0 chr9 3207289 3207349 -139064095 - MIR SINE MIR 0 262 194 306 0 0 0 chr9 3207418 3207452 -139063992 + (TG)n Simple_repeat Simple_repeat 2 35 0 943 313 40 52 chr9 3207484 3207989 -139063455 + MLT1K LTR MaLR 77 575 -13 200 211 0 0 chr9 3208392 3208430 -139063014 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 1865 141 0 0 chr9 3208797 3209090 -139062354 + AluJb SINE Alu 14 306 0 378 257 6 26 chr9 3209413 3209587 -139061857 - MER63A DNA MER1_type -2 208 1 655 75 0 0 chr9 3209598 3209678 -139061766 - MADE1 DNA Mariner 0 80 1 765 280 20 0 chr9 3209790 3209990 -139061454 + MIR SINE MIR 58 261 -1 218 272 25 49 chr9 3210033 3210114 -139061330 + MER5B DNA MER1_type 2 80 -98 3234 83 30 0 chr9 3210607 3211039 -139060405 - L1PA7 LINE L1 -1778 4368 3924 7817 82 6 2 chr9 3211039 3212813 -139058631 + L1PA7 LINE L1 4376 6154 0 295 116 0 0 chr9 3213353 3213396 -139058048 + MADE1 DNA Mariner 1 43 -37 218 236 0 14 chr9 3213413 3213485 -139057959 + GA-rich Low_complexity Low_complexity 3 73 0 274 321 102 15 chr9 3213528 3213665 -139057779 - MER5B DNA MER1_type -26 152 4 210 240 0 20 chr9 3214457 3214507 -139056937 + GA-rich Low_complexity Low_complexity 2 50 0 1817 183 37 0 chr9 3214878 3215200 -139056244 - L1MB1 LINE L1 -5 6163 5830 3402 190 25 40 chr9 3215261 3216009 -139055435 - L1PA14 LINE L1 -3 6158 5422 578 325 104 21 chr9 3216450 3216924 -139054520 + MLT1K LTR MaLR 52 584 -4 314 158 0 0 chr9 3218374 3218431 -139053013 + MER52A LTR ERV1 2 58 -1697 6543 180 130 8 chr9 3219173 3220615 -139050829 + MER52A LTR ERV1 46 1753 -2 1749 107 51 4 chr9 3220741 3220994 -139050450 - AluSq SINE Alu -48 265 1 268 393 51 9 chr9 3221940 3222276 -139049168 + HERV16 LTR ERVL 1023 1372 -3624 1081 337 80 18 chr9 3222341 3223020 -139048424 + HERV16 LTR ERVL 1512 2232 -3422 454 271 24 59 chr9 3223041 3223211 -139048233 - MIR SINE MIR -98 164 1 1541 240 272 25 chr9 3223965 3225055 -139046389 - L2 LINE L2 -10 3303 1927 23 0 0 0 chr9 3225323 3225346 -139046098 + AT_rich Low_complexity Low_complexity 1 23 0 908 274 42 33 chr9 3225359 3225695 -139045749 + L1ME LINE L1 5384 5722 -399 180 0 0 0 chr9 3225913 3225933 -139045511 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 2227 267 192 39 chr9 3226050 3227501 -139043943 - L2 LINE L2 -1 3312 1649 857 139 46 13 chr9 3228565 3228716 -139042728 + MER20 DNA MER1_type 2 157 -62 531 281 108 25 chr9 3229717 3229920 -139041524 - MIR SINE MIR 0 262 43 843 249 182 44 chr9 3230218 3230675 -139040769 + HAL1 LINE L1 1230 1749 -758 1122 224 102 63 chr9 3230838 3231033 -139040411 + HAL1 LINE L1 1996 2182 -325 1347 197 66 16 chr9 3231033 3231353 -139040091 + MER46C DNA MER2_type 2 337 -1 1122 224 102 63 chr9 3231353 3231649 -139039795 + HAL1 LINE L1 2182 2506 -1 333 321 15 22 chr9 3232418 3232555 -139038889 + MIR SINE MIR 17 152 -110 933 135 47 57 chr9 3232574 3232766 -139038678 - MER20 DNA MER1_type -7 212 23 358 299 43 37 chr9 3232999 3233163 -139038281 - MIR3 SINE MIR -9 199 35 203 319 14 0 chr9 3233845 3233914 -139037530 + (TATG)n Simple_repeat Simple_repeat 2 71 0 910 189 0 12 chr9 3234020 3234184 -139037260 - AluJb SINE Alu -9 303 142 23 0 0 0 chr9 3234312 3234335 -139037109 + AT_rich Low_complexity Low_complexity 1 23 0 30 27 0 0 chr9 3235498 3235535 -139035909 + AT_rich Low_complexity Low_complexity 1 37 0 1865 147 17 10 chr9 3235540 3235833 -139035611 + AluSx SINE Alu 1 295 -17 289 294 85 7 chr9 3236237 3236390 -139035054 - L1ME LINE L1 -304 5817 5653 266 271 0 0 chr9 3236394 3236464 -139034980 - L1ME LINE L1 -499 5622 5553 451 373 12 12 chr9 3236912 3237081 -139034363 + MIR3 SINE MIR 31 199 -9 419 250 61 14 chr9 3237133 3237281 -139034163 - MER103 DNA DNA -1 165 11 277 211 0 79 chr9 3237892 3237968 -139033476 - MER4-int LTR ERV1 -5431 1167 1098 471 311 24 6 chr9 3238197 3238361 -139033083 + MIR SINE MIR 23 189 -73 256 242 32 0 chr9 3238694 3238789 -139032655 + L1ME LINE L1 5708 5805 -316 811 132 0 41 chr9 3238797 3238918 -139032526 - FLAM_C SINE Alu -16 127 12 1963 254 175 37 chr9 3239422 3240518 -139030926 + HAL1b LINE L1 102 1348 0 679 289 55 42 chr9 3241249 3241629 -139029815 + HAL1 LINE L1 1283 1667 -840 2148 112 14 0 chr9 3241775 3242070 -139029374 - AluSx SINE Alu -13 299 1 231 163 0 0 chr9 3242265 3242308 -139029136 + HAL1b LINE L1 781 823 -525 269 357 31 0 chr9 3242741 3242870 -139028574 - MIR3 SINE MIR -13 195 63 261 0 0 0 chr9 3243199 3243228 -139028216 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 239 383 150 0 chr9 3243746 3243866 -139027578 + L2 LINE L2 3125 3262 -10 1003 210 110 0 chr9 3244219 3244509 -139026935 + LTR37A LTR ERV1 105 426 0 207 0 0 0 chr9 3244596 3244619 -139026825 + (TG)n Simple_repeat Simple_repeat 2 24 0 732 284 48 8 chr9 3244619 3244869 -139026575 + MIR SINE MIR 1 260 -2 928 281 53 81 chr9 3245036 3245544 -139025900 + MLT1J LTR MaLR 1 494 -17 1922 149 0 7 chr9 3245648 3245944 -139025500 - AluJo SINE Alu -12 300 7 244 325 36 0 chr9 3246424 3246507 -139024937 - MIR SINE MIR -65 197 112 228 232 10 81 chr9 3248210 3248309 -139023135 - MIR3 SINE MIR -11 197 106 228 360 126 18 chr9 3249201 3249312 -139022132 - L2 LINE L2 -23 3249 3127 671 289 64 40 chr9 3249317 3249482 -139021962 - MIR SINE MIR 0 262 88 2603 178 26 2 chr9 3249482 3249936 -139021508 + MLT1C LTR MaLR 2 466 -1 671 289 64 40 chr9 3249936 3250019 -139021425 - MIR SINE MIR -174 88 8 1373 165 9 0 chr9 3250486 3250710 -139020734 - L1PA15 LINE L1 -13 6152 5927 2582 130 16 3 chr9 3251072 3251450 -139019994 + MLT1B LTR MaLR 4 386 -4 230 300 0 0 chr9 3252024 3252084 -139019360 + (TG)n Simple_repeat Simple_repeat 2 61 0 245 378 90 27 chr9 3253106 3253294 -139018150 + MLT1K LTR MaLR 126 325 -263 478 241 24 60 chr9 3253550 3253716 -139017728 + LTR45 LTR ERV1 366 525 0 412 319 8 0 chr9 3254386 3254505 -139016939 + L2 LINE L2 3187 3306 -7 259 292 177 0 chr9 3254567 3254663 -139016781 - L2 LINE L2 0 3313 3201 663 215 115 68 chr9 3254684 3254875 -139016569 - MER20 DNA MER1_type -19 200 1 1410 291 76 10 chr9 3254877 3255571 -139015873 - L2 LINE L2 -119 3194 2458 423 292 146 0 chr9 3255575 3255712 -139015732 - MIR SINE MIR -104 158 2 1871 253 144 16 chr9 3255840 3256751 -139014693 + Charlie7 DNA MER1_type 436 1462 -1150 7676 185 83 22 chr9 3256755 3258064 -139013380 + L1M4c LINE L1 19 1246 -5138 1358 183 147 0 chr9 3258064 3258316 -139013128 - AluJb SINE Alu -13 289 1 7676 185 83 22 chr9 3258316 3258350 -139013094 + L1M4c LINE L1 1246 1276 -5108 2078 138 0 0 chr9 3258350 3258679 -139012765 + AluSx SINE Alu 4 312 0 7676 185 83 22 chr9 3258679 3259130 -139012314 + L1M4c LINE L1 1276 1924 -4460 2044 152 0 0 chr9 3259132 3259434 -139012010 - AluSx SINE Alu -10 302 1 572 185 8 0 chr9 3259515 3259634 -139011810 - L1MA9 LINE L1 -4 6308 6189 225 206 0 32 chr9 3259636 3259699 -139011745 + L1M4c LINE L1 2041 2101 -4283 * 1539 236 29 28 chr9 3259688 3260340 -139011104 + L1M4c LINE L1 2835 3487 -2895 501 134 0 0 chr9 3260359 3260441 -139011003 + L1MB3 LINE L1 1386 1467 -4917 317 146 0 0 chr9 3260443 3260491 -139010953 - Alu SINE Alu -15 287 240 2056 147 55 30 chr9 3260503 3261007 -139010437 - MLT2A2 LTR ERVL -22 532 2 3503 219 39 28 chr9 3261010 3262046 -139009398 + L1MB3 LINE L1 3481 4527 -1855 1934 153 88 5 chr9 3262045 3262430 -139009014 + L1MB3 LINE L1 5561 5977 -442 * 893 189 91 103 chr9 3262430 3262788 -139008656 + MLT1A1 LTR MaLR 1 428 -4 2301 161 33 5 chr9 3262788 3263218 -139008226 + L1MB3 LINE L1 5969 6410 -9 2112 234 90 17 chr9 3263229 3263997 -139007447 + Charlie7 DNA MER1_type 1462 2285 -327 294 253 49 31 chr9 3264201 3264220 -139007224 - L1MA10 LINE L1 0 6334 6316 2212 202 102 40 chr9 3264220 3264894 -139006550 - L1ME2 LINE L1 -11 6153 5438 21 0 0 0 chr9 3265138 3265159 -139006285 + AT_rich Low_complexity Low_complexity 1 21 0 2779 185 42 24 chr9 3266163 3266790 -139004654 + LTR9B LTR ERV1 7 644 0 722 206 101 42 chr9 3267204 3267599 -139003845 - MLT1A1 LTR MaLR 0 365 24 219 269 164 0 chr9 3267622 3267689 -139003755 + MIR SINE MIR 76 153 -55 642 198 161 0 chr9 3267940 3268102 -139003342 + MER5A DNA MER1_type 2 189 0 625 285 34 34 chr9 3268570 3268698 -139002746 - MIR SINE MIR -34 228 98 2252 186 83 2 chr9 3268698 3269165 -139002279 + MLT1D LTR MaLR 1 505 0 625 285 34 34 chr9 3269165 3269243 -139002201 - MIR SINE MIR -163 99 22 919 298 75 11 chr9 3270767 3271139 -139000305 + LTR16A LTR ERVL 55 450 0 871 190 34 34 chr9 3271326 3271450 -138999994 + MER3 DNA MER1_type 5 131 -78 1790 177 23 7 chr9 3271450 3271619 -138999825 - AluSx SINE Alu -2 310 132 1689 139 4 4 chr9 3271619 3271864 -138999580 - AluSx SINE Alu -15 297 53 1790 177 23 7 chr9 3271864 3271999 -138999445 - AluSx SINE Alu -180 132 1 871 190 34 34 chr9 3271999 3272079 -138999365 + MER3 DNA MER1_type 130 209 0 809 111 0 0 chr9 3273630 3273738 -138997706 + AluSg/x SINE Alu 175 282 -30 345 216 0 0 chr9 3273946 3274020 -138997424 + L1MC4 LINE L1 7785 7858 -184 427 324 0 16 chr9 3274081 3274263 -138997181 + (TA)n Simple_repeat Simple_repeat 1 179 0 235 247 0 0 chr9 3274317 3274390 -138997054 + L1MC4 LINE L1 7925 7997 -45 424 211 0 21 chr9 3274390 3274485 -138996959 - FAM SINE Alu -5 180 88 1228 278 75 20 chr9 3275031 3275745 -138995699 + L1ME3A LINE L1 5183 5934 -236 21 0 0 0 chr9 3276816 3276837 -138994607 + AT_rich Low_complexity Low_complexity 1 21 0 2090 148 33 25 chr9 3276912 3277271 -138994173 - THE1B LTR MaLR -2 362 1 2402 66 0 38 chr9 3277383 3277700 -138993744 + AluY SINE Alu 1 305 -6 380 312 102 16 chr9 3277942 3278128 -138993316 + MIR SINE MIR 61 262 0 242 389 18 42 chr9 3278667 3278834 -138992610 - MIR SINE MIR -79 183 21 225 0 0 0 chr9 3279012 3279037 -138992407 + (TG)n Simple_repeat Simple_repeat 1 25 0 328 268 120 11 chr9 3280524 3280671 -138990773 - MIR SINE MIR -33 175 19 546 239 103 0 chr9 3281133 3281288 -138990156 + MLT1J2 LTR MaLR 280 450 0 300 339 112 52 chr9 3281306 3281592 -138989852 + L2 LINE L2 2967 3269 -3 263 247 108 32 chr9 3281957 3282050 -138989394 + L2 LINE L2 2874 2973 -341 1160 292 78 19 chr9 3282108 3282551 -138988893 + LTR33 LTR ERVL 1 477 -44 2744 106 39 14 chr9 3282551 3282929 -138988515 + MLT2A1 LTR ERVL 1 393 -51 308 102 0 17 chr9 3282929 3282988 -138988456 + (TAGA)n Simple_repeat Simple_repeat 1 58 0 2744 106 39 14 chr9 3282988 3283042 -138988402 + MLT2A1 LTR ERVL 393 444 0 1160 292 78 19 chr9 3283042 3283085 -138988359 + LTR33 LTR ERVL 477 516 -5 2509 0 0 0 chr9 3283200 3283468 -138987976 - AluYa5 SINE Alu -6 305 38 323 351 46 23 chr9 3283682 3283813 -138987631 + L2 LINE L2 3134 3267 -5 1821 163 15 18 chr9 3284463 3284800 -138986644 + MER2 DNA MER2_type 1 336 -9 277 303 125 20 chr9 3284824 3284976 -138986468 - MIR SINE MIR -5 257 90 3305 45 0 0 chr9 3285029 3285430 -138986014 - L1PA4 LINE L1 -3 6152 5752 225 262 131 0 chr9 3286405 3286466 -138984978 - L2 LINE L2 -19 3294 3226 520 260 172 21 chr9 3287041 3287326 -138984118 + MLT1L LTR MaLR 38 365 -250 272 383 104 0 chr9 3287460 3287661 -138983783 - L2 LINE L2 -663 2651 2430 252 59 0 0 chr9 3287776 3287810 -138983634 + (CTG)n Simple_repeat Simple_repeat 2 35 0 295 353 24 50 chr9 3287995 3288335 -138983109 + LTR16C LTR ERVL 159 489 -2 967 194 122 56 chr9 3288569 3288889 -138982555 - MER2 DNA MER2_type 0 344 4 1066 261 12 4 chr9 3289339 3289674 -138981770 + MLT1I LTR MaLR 13 388 -21 1868 199 39 18 chr9 3290345 3290787 -138980657 + MLT1C LTR MaLR 11 461 -6 27 0 0 0 chr9 3290815 3290842 -138980602 + AT_rich Low_complexity Low_complexity 1 27 0 324 333 33 13 chr9 3290972 3291125 -138980319 + MIR SINE MIR 23 178 -84 396 151 0 0 chr9 3291133 3291206 -138980238 + LTR67 LTR ERVL 2 74 -483 495 299 139 43 chr9 3291261 3291635 -138979809 + LTR67 LTR ERVL 148 557 0 314 268 6 159 chr9 3292610 3292841 -138978603 - MIR SINE MIR -3 205 9 790 328 16 4 chr9 3292967 3293214 -138978230 + MIR SINE MIR 13 262 0 367 228 0 13 chr9 3294061 3294140 -138977304 - MIR3 SINE MIR -6 202 125 522 46 0 0 chr9 3294772 3294837 -138976607 + (TC)n Simple_repeat Simple_repeat 1 65 0 264 256 0 0 chr9 3294847 3294925 -138976519 + L1ME LINE L1 58 135 -5935 2772 94 5 0 chr9 3294933 3295306 -138976138 - THE1C LTR MaLR 0 375 1 253 338 0 0 chr9 3295508 3295579 -138975865 + C-rich Low_complexity Low_complexity 1 71 0 927 251 7 10 chr9 3295916 3296386 -138975058 + L1ME LINE L1 364 940 -5143 879 287 75 41 chr9 3296591 3297083 -138974361 - MLT1H LTR MaLR -40 509 1 282 307 0 13 chr9 3297156 3297231 -138974213 - MIR SINE MIR -85 123 50 2464 182 22 55 chr9 3297543 3298121 -138973323 - L1MB5 LINE L1 -10 6164 5606 234 388 10 0 chr9 3298404 3298507 -138972937 - MIR SINE MIR -67 141 38 813 159 28 14 chr9 3298626 3298771 -138972673 + FRAM SINE Alu 19 165 -11 614 251 94 30 chr9 3298993 3299196 -138972248 - MIR SINE MIR -2 260 45 327 157 0 0 chr9 3299189 3299240 -138972204 - MER5A DNA MER1_type -138 51 1 * 216 250 29 0 chr9 3299808 3299876 -138971568 + (TA)n Simple_repeat Simple_repeat 2 71 0 414 305 11 29 chr9 3300573 3300747 -138970697 + MER5B DNA MER1_type 2 172 -6 1403 202 112 30 chr9 3300871 3301157 -138970287 - MSTD LTR MaLR 0 396 72 2141 131 3 7 chr9 3301157 3301462 -138969982 - AluSq SINE Alu -9 304 1 1403 202 112 30 chr9 3301462 3301541 -138969903 - MSTD LTR MaLR -324 72 1 316 298 106 13 chr9 3302244 3302395 -138969049 - L1ME4a LINE L1 -202 5919 5755 239 294 228 0 chr9 3302399 3302491 -138968953 + MER5A DNA MER1_type 69 181 -8 2277 123 0 3 chr9 3302647 3302955 -138968489 - AluSx SINE Alu -5 307 1 261 222 193 19 chr9 3303002 3303209 -138968235 - L1ME4a LINE L1 -36 6085 5843 202 373 27 0 chr9 3303244 3303319 -138968125 - L3 LINE CR1 -1043 534 458 353 404 13 30 chr9 3303390 3303620 -138967824 - L3 LINE CR1 -1309 268 43 613 317 69 29 chr9 3303644 3303991 -138967453 - MARNA DNA Mariner -201 385 25 1462 219 38 27 chr9 3303999 3304365 -138967079 - MLT1A2 LTR MaLR -4 370 1 216 0 0 0 chr9 3304556 3304580 -138966864 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 23 0 0 0 chr9 3304672 3304695 -138966749 + AT_rich Low_complexity Low_complexity 1 23 0 195 42 0 0 chr9 3304907 3304931 -138966513 + (T)n Simple_repeat Simple_repeat 1 24 0 1924 68 0 16 chr9 3306078 3306326 -138965118 - AluY SINE Alu -5 306 63 259 331 58 32 chr9 3306461 3306615 -138964829 + L2 LINE L2 3149 3306 -7 549 203 25 20 chr9 3306645 3306893 -138964551 + CT-rich Low_complexity Low_complexity 1 249 0 573 315 91 4 chr9 3308460 3308701 -138962743 - MLT1K LTR MaLR -172 416 155 434 292 8 8 chr9 3309271 3309401 -138962043 - MER94 DNA DNA -3 131 2 23 68 0 0 chr9 3309717 3309761 -138961683 + AT_rich Low_complexity Low_complexity 1 44 0 413 270 50 87 chr9 3310918 3311159 -138960285 + MER102b DNA MER1_type 103 334 -7 294 125 0 0 chr9 3312392 3312440 -138959004 + (TGGA)n Simple_repeat Simple_repeat 3 50 0 182 150 25 0 chr9 3313446 3313486 -138957958 + (CA)n Simple_repeat Simple_repeat 2 42 0 203 292 21 31 chr9 3313598 3313694 -138957750 + (CATA)n Simple_repeat Simple_repeat 4 98 0 217 218 109 0 chr9 3314000 3314055 -138957389 - L2 LINE L2 -15 3257 3197 224 30 30 0 chr9 3314111 3314144 -138957300 + (GA)n Simple_repeat Simple_repeat 1 34 0 188 304 0 36 chr9 3314641 3314697 -138956747 + L2 LINE L2 3148 3201 -71 1779 156 3 33 chr9 3314783 3315084 -138956360 - AluJb SINE Alu -20 292 1 1886 176 76 23 chr9 3315113 3315644 -138955800 - MLT2A2 LTR ERVL 0 554 1 202 233 0 0 chr9 3315649 3315692 -138955752 + MIR SINE MIR 196 238 -24 237 65 0 0 chr9 3315733 3315764 -138955680 + (TCC)n Simple_repeat Simple_repeat 3 33 0 321 343 56 0 chr9 3315838 3315946 -138955498 + MER91C DNA MER1_type 1 114 -26 868 107 0 0 chr9 3317410 3317532 -138953912 - FRAM SINE Alu -1 175 54 351 320 109 6 chr9 3317540 3317715 -138953729 - MIR SINE MIR -62 200 8 1769 184 27 15 chr9 3317730 3318067 -138953377 + MER58B DNA MER1_type 1 341 0 298 378 6 47 chr9 3318945 3319117 -138952327 + MIR3 SINE MIR 1 145 -63 594 251 118 102 chr9 3319171 3319673 -138951771 - MLT1J LTR MaLR 0 511 2 1056 224 29 22 chr9 3319982 3320295 -138951149 + MER33 DNA MER1_type 1 315 -9 219 311 68 0 chr9 3320296 3320370 -138951074 + L2 LINE L2 3192 3270 -43 434 365 36 12 chr9 3320541 3320793 -138950651 + MIR SINE MIR 5 262 0 984 273 90 19 chr9 3321126 3321504 -138949940 - MLT1I LTR MaLR -3 406 2 456 266 87 100 chr9 3321689 3322219 -138949225 + L1ME4a LINE L1 5485 6007 -114 181 240 40 0 chr9 3322384 3322434 -138949010 + L2 LINE L2 3261 3312 -1 512 176 84 59 chr9 3322981 3323100 -138948344 + MER91B DNA MER1_type 1 122 -68 310 245 20 69 chr9 3323124 3323226 -138948218 + MER91B DNA MER1_type 93 189 -1 216 272 0 99 chr9 3323708 3323789 -138947655 + L2 LINE L2 3239 3311 -2 1060 168 10 15 chr9 3323819 3324021 -138947423 + MER41B LTR ERV1 349 549 -86 357 263 36 15 chr9 3324104 3324241 -138947203 - L1MC/D LINE L1 -2043 5765 5626 414 100 0 0 chr9 3324249 3324309 -138947135 + (TA)n Simple_repeat Simple_repeat 2 61 0 23 33 0 0 chr9 3324309 3324339 -138947105 + AT_rich Low_complexity Low_complexity 1 30 0 1909 139 4 4 chr9 3324342 3324622 -138946822 + AluSx SINE Alu 1 280 -32 336 111 0 0 chr9 3324622 3324685 -138946759 + (TCTG)n Simple_repeat Simple_repeat 2 64 0 21 36 0 0 chr9 3324685 3324713 -138946731 + AT_rich Low_complexity Low_complexity 1 28 0 376 106 106 0 chr9 3324755 3324916 -138946528 + (TA)n Simple_repeat Simple_repeat 1 178 0 29 60 0 0 chr9 3324916 3324966 -138946478 + AT_rich Low_complexity Low_complexity 1 50 0 368 96 117 0 chr9 3324968 3325525 -138945919 + (TA)n Simple_repeat Simple_repeat 1 622 0 734 202 12 40 chr9 3325526 3325699 -138945745 - AluJo SINE Alu -144 168 1 294 151 0 0 chr9 3326264 3326317 -138945127 - L1MC5 LINE L1 -185 7776 7724 2019 244 61 23 chr9 3326599 3327338 -138944106 + L1M4 LINE L1 2505 3271 -2875 2028 221 94 52 chr9 3327368 3328142 -138943302 + L1M4 LINE L1 3565 4371 -1775 * 2326 234 41 53 chr9 3328121 3328952 -138942492 + L1MC4 LINE L1 7215 8035 -7 389 220 28 28 chr9 3329185 3329294 -138942150 + MIR SINE MIR 84 192 -70 919 303 149 9 chr9 3329345 3329880 -138941564 + L2 LINE L2 2713 3313 0 27 49 0 0 chr9 3329962 3330003 -138941441 + AT_rich Low_complexity Low_complexity 1 41 0 1956 134 4 0 chr9 3330010 3330285 -138941159 + AluSx SINE Alu 1 276 -36 23 0 0 0 chr9 3330340 3330363 -138941081 + AT_rich Low_complexity Low_complexity 1 23 0 1678 253 31 13 chr9 3331721 3332171 -138939273 + LTR40c LTR ERVL 1 458 -7 625 338 30 72 chr9 3332644 3333380 -138938064 + L1ME2 LINE L1 110 814 -5582 * 1867 264 49 3 chr9 3333366 3334105 -138937339 + L1ME2 LINE L1 2888 3660 -2555 548 284 34 0 chr9 3334140 3334344 -138937100 + L1ME2 LINE L1 3959 4169 -2046 1409 239 164 13 chr9 3334373 3335072 -138936372 + L1ME2 LINE L1 4605 5409 -806 2280 200 91 35 chr9 3335074 3335704 -138935740 + L1ME2 LINE L1 5444 6108 -125 277 403 8 0 chr9 3336016 3336145 -138935299 + MER89-int LTR ERV1 6334 6463 -338 10352 25 19 2 chr9 3336479 3338466 -138932978 + L1PA4 LINE L1 4170 6155 0 207 0 0 0 chr9 3338818 3338841 -138932603 + (A)n Simple_repeat Simple_repeat 1 23 0 317 181 97 42 chr9 3339248 3339320 -138932124 - MIR SINE MIR -142 120 45 1833 199 50 13 chr9 3339321 3339703 -138931741 - MER57A LTR ERV1 0 403 8 218 260 87 39 chr9 3339897 3340001 -138931443 + MIR SINE MIR 98 206 -56 2374 95 0 7 chr9 3340066 3340371 -138931073 - AluSp SINE Alu -10 303 1 192 182 250 0 chr9 3341028 3341072 -138930372 + L2 LINE L2 3217 3271 -1 25 51 0 0 chr9 3341361 3341400 -138930044 + AT_rich Low_complexity Low_complexity 1 39 0 1573 166 76 3 chr9 3341531 3341821 -138929623 + AluJb SINE Alu 1 311 -1 23 86 0 0 chr9 3341886 3341944 -138929500 + AT_rich Low_complexity Low_complexity 1 58 0 230 310 99 0 chr9 3341944 3342086 -138929358 + L1ME4a LINE L1 5482 5637 -484 2161 106 6 13 chr9 3342310 3342622 -138928822 + AluSx SINE Alu 1 310 -2 1788 68 8 0 chr9 3342638 3342875 -138928569 + L1PA7 LINE L1 5916 6154 0 393 236 55 0 chr9 3342884 3343011 -138928433 + L1ME4a LINE L1 5988 6121 0 1277 165 11 56 chr9 3343180 3343446 -138927998 - AluJb SINE Alu -58 254 1 1565 239 45 19 chr9 3345247 3345709 -138925735 + MLT1E2 LTR MaLR 156 626 0 1536 266 55 82 chr9 3345721 3346713 -138924731 + HAL1 LINE L1 739 1704 -803 583 283 97 39 chr9 3346910 3347221 -138924223 + HAL1 LINE L1 2168 2496 -11 631 298 50 17 chr9 3347237 3347475 -138923969 - MIR SINE MIR 0 262 17 1557 192 76 21 chr9 3347888 3348269 -138923175 + LTR52 LTR ERVL 18 419 -2 260 257 76 29 chr9 3348708 3348813 -138922631 - MIR SINE MIR -94 168 59 344 259 108 76 chr9 3349159 3349344 -138922100 - MIR3 SINE MIR -10 198 8 4841 197 23 34 chr9 3349511 3350790 -138920654 - L1MD2 LINE L1 -24 6335 5074 28 0 0 0 chr9 3351698 3351726 -138919718 + AT_rich Low_complexity Low_complexity 1 28 0 424 109 0 0 chr9 3351726 3351781 -138919663 + LOR1-int LTR ERV1 3813 3867 -4253 1308 134 0 0 chr9 3351808 3352017 -138919427 - L1MA2 LINE L1 -4 6300 6092 325 347 172 24 chr9 3352956 3353247 -138918197 - L2 LINE L2 -7 3265 2932 276 287 43 17 chr9 3353479 3353594 -138917850 - MIR SINE MIR -43 219 102 210 37 0 0 chr9 3353678 3353705 -138917739 + (TAAAAA)n Simple_repeat Simple_repeat 4 30 0 337 340 51 9 chr9 3354161 3354376 -138917068 + L1P LINE L1 3509 3732 -2414 201 412 0 8 chr9 3354379 3354498 -138916946 + MIR SINE MIR 41 158 -104 779 216 59 54 chr9 3354560 3354727 -138916717 - MIR SINE MIR -23 239 69 1818 189 55 3 chr9 3354727 3355070 -138916374 + MLT1A1 LTR MaLR 1 361 -4 779 216 59 54 chr9 3355070 3355124 -138916320 - MIR SINE MIR -193 69 17 326 298 127 72 chr9 3355151 3355464 -138915980 + L1ME LINE L1 3862 4156 -1990 2136 174 61 2 chr9 3355464 3355872 -138915572 - MSTB1 LTR MaLR 0 432 1 326 298 127 72 chr9 3355872 3356173 -138915271 + L1ME LINE L1 4156 4510 -1636 21 36 0 0 chr9 3356496 3356524 -138914920 + AT_rich Low_complexity Low_complexity 1 28 0 574 279 60 60 chr9 3356538 3356853 -138914591 + MLT1J LTR MaLR 197 511 0 5092 73 16 0 chr9 3357226 3357913 -138913531 - L1PA10 LINE L1 -186 5982 5285 490 304 68 34 chr9 3357931 3358257 -138913187 + L1ME LINE L1 5484 5820 -301 3278 146 8 42 chr9 3358738 3359354 -138912090 + L1MA10 LINE L1 5740 6334 0 208 311 39 0 chr9 3360058 3360161 -138911283 + L2 LINE L2 2549 2655 -659 303 339 99 9 chr9 3360219 3360440 -138911004 + MIR SINE MIR 6 246 -16 246 207 37 37 chr9 3360524 3360606 -138910838 - MER103 DNA DNA -82 84 3 1788 188 28 6 chr9 3361226 3361583 -138909861 - MLT1A1 LTR MaLR 0 365 1 24 0 0 0 chr9 3361594 3361618 -138909826 + AT_rich Low_complexity Low_complexity 1 24 0 548 326 82 10 chr9 3362228 3362424 -138909020 - MIR SINE MIR -33 229 20 186 327 140 47 chr9 3362497 3362604 -138908840 - L2 LINE L2 -17 3255 3139 1258 113 21 0 chr9 3363282 3363476 -138907968 - L1PB3 LINE L1 0 6154 5957 2869 9 0 0 chr9 3363860 3364175 -138907269 + AluYb8 SINE Alu 1 315 -3 426 253 7 20 chr9 3364187 3364333 -138907111 - L1MC4a LINE L1 -1913 5895 5752 433 280 19 32 chr9 3364406 3364684 -138906760 - L1MEd LINE L1 -4862 1257 1069 455 297 57 29 chr9 3364779 3365025 -138906419 + L1MEd LINE L1 971 1223 -4896 2201 114 0 7 chr9 3365353 3365659 -138905785 - AluSx SINE Alu -8 304 1 397 333 56 12 chr9 3365689 3365851 -138905593 - MIR3 SINE MIR -4 204 36 414 183 65 11 chr9 3366468 3366561 -138904883 + MER5A DNA MER1_type 9 106 -83 796 327 28 6 chr9 3367900 3368261 -138903183 + L1ME LINE L1 5452 5820 -301 1480 148 60 27 chr9 3369064 3369396 -138902048 - L1MA8 LINE L1 0 6291 5949 511 118 0 24 chr9 3370390 3370475 -138900969 - AluSc SINE Alu -226 83 1 3281 164 11 9 chr9 3370476 3371000 -138900444 + HUERS-P3 LTR ERV1 6198 6722 -2197 13005 119 27 45 chr9 3371000 3372169 -138899275 + HUERS-P3 LTR ERV1 6863 8051 -868 209 271 0 68 chr9 3372169 3372228 -138899216 + MER5A DNA MER1_type 1 55 -134 13005 119 27 45 chr9 3372228 3372245 -138899199 + HUERS-P3 LTR ERV1 8051 8067 -852 2225 114 0 7 chr9 3372245 3372553 -138898891 - AluSg SINE Alu -4 306 1 13005 119 27 45 chr9 3372553 3373401 -138898043 + HUERS-P3 LTR ERV1 8067 8919 0 2580 186 19 68 chr9 3373401 3374045 -138897399 + LTR9 LTR ERV1 1 612 0 1835 214 53 22 chr9 3374045 3374862 -138896582 - L1MC4a LINE L1 -477 5707 4917 252 0 0 0 chr9 3374862 3374890 -138896554 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1835 214 53 22 chr9 3374890 3375550 -138895894 - L1MC4a LINE L1 -1267 4917 4020 198 182 0 23 chr9 3375561 3375605 -138895839 - L2 LINE L2 -637 2677 2635 2029 125 3 28 chr9 3376150 3376471 -138894973 - AluSq SINE Alu 0 313 1 335 307 92 33 chr9 3376653 3376806 -138894638 + L2 LINE L2 2988 3149 -164 22 0 0 0 chr9 3376992 3377014 -138894430 + AT_rich Low_complexity Low_complexity 1 22 0 6203 132 52 9 chr9 3377518 3378599 -138892845 + L1MC1 LINE L1 5188 6317 -16 2542 75 80 3 chr9 3378627 3379002 -138892442 - L1PA13 LINE L1 -5 6158 5755 2599 89 3 3 chr9 3379003 3379361 -138892083 - L1PA12 LINE L1 -329 5839 5482 2388 4 0 0 chr9 3381329 3381584 -138889860 + AluYa5 SINE Alu 39 293 -18 204 381 16 8 chr9 3382006 3382132 -138889312 + L2 LINE L2 2629 2755 -559 526 274 91 43 chr9 3382211 3382407 -138889037 + MIR SINE MIR 20 225 -37 209 194 0 0 chr9 3382877 3382913 -138888531 + (TGAA)n Simple_repeat Simple_repeat 4 39 0 186 133 0 0 chr9 3383634 3383664 -138887780 + (GAAA)n Simple_repeat Simple_repeat 1 30 0 1099 256 62 6 chr9 3384089 3384451 -138886993 - L1ME LINE L1 -552 5618 5237 826 333 89 24 chr9 3384563 3384935 -138886509 + LTR16C LTR ERVL 90 485 -6 242 270 79 0 chr9 3385782 3385871 -138885573 + L2 LINE L2 3218 3313 0 1858 155 0 7 chr9 3386012 3386309 -138885135 - AluJb SINE Alu -17 295 1 276 333 0 0 chr9 3386506 3386593 -138884851 - L2 LINE L2 -4 3268 3182 257 303 40 30 chr9 3386737 3386836 -138884608 - L2 LINE L2 -11 3302 3203 501 248 272 5 chr9 3386920 3387122 -138884322 + MIR SINE MIR 7 262 0 1535 271 126 46 chr9 3387726 3389649 -138881795 + L1ME2 LINE L1 187 1954 -4126 297 51 0 0 chr9 3389649 3389688 -138881756 + (CA)n Simple_repeat Simple_repeat 2 40 0 * 684 67 0 0 chr9 3389687 3389777 -138881667 + (TA)n Simple_repeat Simple_repeat 2 91 0 1535 271 126 46 chr9 3389688 3390268 -138881176 + L1ME2 LINE L1 1954 2790 -3290 1784 242 55 32 chr9 3390279 3390931 -138880513 + L1ME2 LINE L1 3317 3983 -2097 426 215 56 21 chr9 3390926 3391070 -138880374 + L1ME2 LINE L1 5124 5272 -808 * 2223 98 0 0 chr9 3391117 3391403 -138880041 + AluSp SINE Alu 4 289 -24 21 0 0 0 chr9 3391405 3391426 -138880018 + AT_rich Low_complexity Low_complexity 1 21 0 2127 91 30 14 chr9 3391448 3391745 -138879699 + AluSc SINE Alu 6 307 -2 1779 257 25 17 chr9 3391748 3392278 -138879166 + L1ME2 LINE L1 5302 5835 -263 460 35 0 0 chr9 3392270 3392327 -138879117 - L1P LINE L1 -5916 230 174 * 36900 54 1 2 chr9 3392331 3395717 -138875727 + L1PA5 LINE L1 674 4060 -2094 7618 39 1 1 chr9 3395717 3396614 -138874830 - MER11D LTR ERVK 0 897 1 36900 54 1 2 chr9 3396614 3398693 -138872751 + L1PA5 LINE L1 4060 6138 -16 583 268 86 8 chr9 3398741 3398984 -138872460 + L1ME2 LINE L1 5813 6074 -24 12453 204 41 13 chr9 3400419 3400459 -138870985 - L1MB1 LINE L1 -209 6195 6158 624 193 0 0 chr9 3400459 3400594 -138870850 - L1MB1 LINE L1 -1 6167 6033 12453 204 41 13 chr9 3400594 3404440 -138867004 - L1MB1 LINE L1 -246 6158 2190 197 284 116 0 chr9 3405091 3405180 -138866264 + MIR SINE MIR 52 148 -62 21 36 0 0 chr9 3406188 3406216 -138865228 + AT_rich Low_complexity Low_complexity 1 28 0 2710 61 3 0 chr9 3406259 3406603 -138864841 - L1PA7 LINE L1 0 6154 5810 1932 58 0 0 chr9 3406603 3406845 -138864599 + L1PA7 LINE L1 5572 5813 -341 336 306 27 20 chr9 3408144 3408291 -138863153 + L1ME4a LINE L1 5965 6112 -9 185 0 0 39 chr9 3408618 3408644 -138862800 + (TTA)n Simple_repeat Simple_repeat 3 27 0 517 324 117 28 chr9 3408990 3409450 -138861994 - L1M4 LINE L1 -1586 4560 4060 23 54 0 0 chr9 3410114 3410151 -138861293 + AT_rich Low_complexity Low_complexity 1 37 0 340 238 105 70 chr9 3411089 3411158 -138860286 + MIR SINE MIR 76 141 -121 339 25 0 0 chr9 3411158 3411198 -138860246 + (ATG)n Simple_repeat Simple_repeat 3 42 0 340 238 105 70 chr9 3411198 3411271 -138860173 + MIR SINE MIR 141 223 -39 284 315 15 54 chr9 3412183 3412313 -138859131 - MIR3 SINE MIR -11 197 73 503 130 0 0 chr9 3412448 3412525 -138858919 - MADE1 DNA Mariner -3 77 1 561 282 17 35 chr9 3413453 3413627 -138857817 - MER20B DNA MER1_type -609 174 4 621 293 25 20 chr9 3414445 3414643 -138856801 - MIR SINE MIR -56 206 8 219 262 33 16 chr9 3414775 3414836 -138856608 - MIR SINE MIR -115 147 86 29 0 0 0 chr9 3414917 3414946 -138856498 + AT_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr9 3415116 3415136 -138856308 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 345 140 0 0 chr9 3416286 3416343 -138855101 + (CA)n Simple_repeat Simple_repeat 2 58 0 716 239 177 5 chr9 3416377 3416586 -138854858 - MIR SINE MIR 0 262 18 337 300 134 89 chr9 3416583 3417052 -138854392 + L2 LINE L2 2770 3255 -17 * 336 281 22 11 chr9 3418306 3418395 -138853049 + MER91A DNA MER1_type 2 91 -105 2102 177 28 23 chr9 3419095 3420680 -138850764 + L1MC3 LINE L1 4731 7765 -20 1957 119 0 41 chr9 3420680 3421001 -138850443 - AluSx SINE Alu 0 309 1 2102 177 28 23 chr9 3421001 3421023 -138850421 + L1MC3 LINE L1 7765 7785 0 525 267 99 15 chr9 3421225 3421487 -138849957 + HAL1 LINE L1 1398 1681 -826 35 0 0 0 chr9 3421637 3421672 -138849772 + AT_rich Low_complexity Low_complexity 1 35 0 1325 178 114 11 chr9 3423280 3423561 -138847883 + AluSx SINE Alu 2 311 -1 1003 289 16 9 chr9 3425017 3425339 -138846105 + L1MCc LINE L1 130 453 -5970 388 246 48 60 chr9 3425821 3425988 -138845456 + L1MCc LINE L1 795 959 -5464 1060 279 73 26 chr9 3426052 3426540 -138844904 + L1MCc LINE L1 1339 1803 -5319 2172 86 58 0 chr9 3426540 3426831 -138844613 + AluSg SINE Alu 1 308 -2 1060 279 73 26 chr9 3426831 3427287 -138844157 + L1MCc LINE L1 1803 2518 -4604 28895 102 13 3 chr9 3427337 3432470 -138838974 - L1PA7 LINE L1 0 6469 1288 4747 17 0 0 chr9 3432474 3433016 -138838428 - L1PA2 LINE L1 0 6155 5614 4669 34 2 0 chr9 3433016 3433583 -138837861 + L1P LINE L1 4686 5253 -893 * 9008 98 32 5 chr9 3433576 3434840 -138836604 - L1PA7 LINE L1 -5161 1300 2 1819 169 0 19 chr9 3435022 3435330 -138836114 - AluJo SINE Alu -10 302 1 2893 236 64 26 chr9 3435374 3436244 -138835200 + L1MEc LINE L1 40 942 -5454 701 318 32 53 chr9 3436279 3436657 -138834787 - MLT1L LTR MaLR -123 492 123 2533 239 28 11 chr9 3436756 3437299 -138834145 + REP3 LTR ERV 11 562 0 644 264 70 0 chr9 3437426 3437627 -138833817 + MER58C DNA MER1_type 1 215 0 231 361 139 0 chr9 3437697 3437805 -138833639 - MIR SINE MIR -112 150 28 252 59 0 0 chr9 3437976 3438010 -138833434 + (GAAAA)n Simple_repeat Simple_repeat 1 34 0 211 245 75 0 chr9 3438240 3438293 -138833151 - L2 LINE L2 -4 3268 3212 320 268 145 41 chr9 3438429 3438698 -138832746 - MER102a DNA MER1_type 0 330 34 729 117 0 83 chr9 3438838 3438983 -138832461 - L1MD1 LINE L1 -14 6228 6096 213 227 0 0 chr9 3439121 3439165 -138832279 + (TATATG)n Simple_repeat Simple_repeat 6 49 0 606 228 42 5 chr9 3439176 3439365 -138832079 - L1MD1 LINE L1 -1985 5823 5628 874 298 80 35 chr9 3439380 3440172 -138831272 - L1MD1 LINE L1 -748 5398 4686 183 80 0 0 chr9 3440172 3440197 -138831247 + (CCCCCA)n Simple_repeat Simple_repeat 4 28 0 874 298 80 35 chr9 3440197 3440589 -138830855 - L1MD1 LINE L1 -1460 4686 4313 3577 126 24 0 chr9 3440601 3441179 -138830265 - L1MA5A LINE L1 -3 6294 5703 1522 196 37 0 chr9 3441179 3441470 -138829974 + L1PB4 LINE L1 5837 6143 -13 2967 149 18 9 chr9 3441486 3442041 -138829403 - L1MA5A LINE L1 -587 5710 5144 4076 129 25 71 chr9 3442041 3442863 -138828581 - LTR1 LTR ERV1 0 785 1 2967 149 18 9 chr9 3442863 3443238 -138828206 - L1MA5A LINE L1 -1153 5144 4774 327 297 25 0 chr9 3443391 3443509 -138827935 - L1MD1 LINE L1 -1987 4159 4039 1785 189 88 43 chr9 3443931 3444226 -138827218 - Charlie4a DNA MER1_type -1453 508 183 3827 14 0 0 chr9 3444226 3444665 -138826779 + L1PA2 LINE L1 5717 6155 0 1785 189 88 43 chr9 3444665 3444835 -138826609 - Charlie4a DNA MER1_type -1778 183 22 1769 163 3 3 chr9 3446054 3446379 -138825065 - AluSx SINE Alu 0 325 1 1068 202 79 128 chr9 3446775 3446843 -138824601 - MLT1D LTR MaLR -1 504 434 2354 104 0 0 chr9 3446843 3447150 -138824294 + AluSg SINE Alu 3 309 -1 1068 202 79 128 chr9 3447150 3447611 -138823833 - MLT1D LTR MaLR -71 434 1 2977 278 109 28 chr9 3448533 3450647 -138820797 - L1MC4a LINE L1 -758 5388 3850 311 88 0 18 chr9 3450647 3450704 -138820740 + (TA)n Simple_repeat Simple_repeat 1 56 0 2977 278 109 28 chr9 3450704 3451553 -138819891 - L1MC4a LINE L1 -2296 3850 3071 399 21 0 0 chr9 3451777 3451825 -138819619 + (CA)n Simple_repeat Simple_repeat 2 49 0 267 293 75 43 chr9 3451891 3452079 -138819365 - HAL1b LINE L1 -929 419 226 26 30 0 0 chr9 3452202 3452235 -138819209 + AT_rich Low_complexity Low_complexity 1 33 0 216 67 0 0 chr9 3452719 3452749 -138818695 + (TTG)n Simple_repeat Simple_repeat 2 31 0 237 385 54 0 chr9 3455021 3455151 -138816293 + MIR3 SINE MIR 2 138 -70 194 276 163 0 chr9 3455413 3455511 -138815933 + MIR SINE MIR 8 121 -141 307 179 0 24 chr9 3455917 3456001 -138815443 + CT-rich Low_complexity Low_complexity 4 85 0 468 231 23 62 chr9 3456611 3456664 -138814780 + L2 LINE L2 3189 3242 -71 1378 250 82 52 chr9 3456664 3457188 -138814256 + MLT1F LTR MaLR 3 542 0 468 231 23 62 chr9 3457188 3457264 -138814180 + L2 LINE L2 3242 3313 0 23 0 0 0 chr9 3457827 3457850 -138813594 + AT_rich Low_complexity Low_complexity 1 23 0 243 266 78 101 chr9 3457866 3458084 -138813360 - L2 LINE L2 -174 3139 2927 345 24 0 0 chr9 3458162 3458204 -138813240 + (CA)n Simple_repeat Simple_repeat 1 42 0 224 228 0 0 chr9 3458372 3458429 -138813015 + T-rich Low_complexity Low_complexity 1 57 0 290 293 81 10 chr9 3458431 3458530 -138812914 - MIR SINE MIR -87 175 70 1123 176 27 5 chr9 3459486 3459708 -138811736 + L1MA9 LINE L1 6049 6275 -37 2128 99 3 11 chr9 3460023 3460334 -138811110 - AluSq SINE Alu 0 311 3 304 232 141 40 chr9 3460973 3461072 -138810372 + MER20B DNA MER1_type 70 178 -605 641 190 25 0 chr9 3461374 3461495 -138809949 - MLT2D LTR ERVL -274 140 17 882 220 70 0 chr9 3461522 3461722 -138809722 + MLT1H1 LTR MaLR 342 555 0 966 305 90 11 chr9 3461733 3462166 -138809278 + L2 LINE L2 2842 3308 -5 3258 151 36 31 chr9 3462817 3463372 -138808072 + MER74A LTR ERVL 1 558 0 304 281 12 0 chr9 3463496 3463578 -138807866 - L2 LINE L2 -4 3268 3186 1583 213 0 3 chr9 3463960 3464247 -138807197 + AluJo SINE Alu 1 286 -26 659 315 84 4 chr9 3464251 3464489 -138806955 - MIR SINE MIR 0 262 6 339 213 0 50 chr9 3465464 3465544 -138805900 - L2 LINE L2 -5 3308 3233 223 311 25 8 chr9 3466460 3466579 -138804865 + (CACG)n Simple_repeat Simple_repeat 1 121 0 425 193 211 18 chr9 3468282 3468396 -138803048 - MER82 DNA MER2_type -504 149 14 1140 244 136 40 chr9 3468923 3469373 -138802071 - MLT1D LTR MaLR 0 505 13 2245 109 0 10 chr9 3469669 3469981 -138801463 - AluY SINE Alu 0 311 3 249 146 0 0 chr9 3470048 3470096 -138801348 + (GA)n Simple_repeat Simple_repeat 1 48 0 509 254 204 33 chr9 3470127 3470402 -138801042 + Charlie2 DNA MER1_type 1 322 -2540 611 199 121 0 chr9 3470409 3470550 -138800894 + Charlie2 DNA MER1_type 1858 2015 -847 743 244 120 14 chr9 3470637 3471055 -138800389 + Charlie2 DNA MER1_type 2334 2795 -67 2244 116 6 30 chr9 3471082 3471443 -138800001 + MER50 LTR ERV1 1 352 -382 518 264 156 64 chr9 3471455 3471781 -138799663 - LTR18A LTR ERVL -1 356 1 1840 143 39 34 chr9 3471781 3472138 -138799306 + MER50 LTR ERV1 347 705 -29 749 233 25 6 chr9 3474094 3474253 -138797191 - MER5A DNA MER1_type -3 186 25 1450 172 31 151 chr9 3474383 3474808 -138796636 + MLT1A2 LTR MaLR 1 374 0 185 359 39 19 chr9 3475075 3475178 -138796266 + MIR SINE MIR 104 208 -54 321 301 141 47 chr9 3475185 3475441 -138796003 + L2 LINE L2 3032 3311 -2 2056 107 0 14 chr9 3475762 3476052 -138795392 + AluSc SINE Alu 1 286 -23 243 217 36 48 chr9 3476902 3476985 -138794459 + MIR SINE MIR 104 185 -77 240 231 19 0 chr9 3477719 3477771 -138793673 + (TATATG)n Simple_repeat Simple_repeat 5 57 0 253 298 118 8 chr9 3477776 3478003 -138793441 + L1MC4a LINE L1 5389 5640 -522 505 195 190 36 chr9 3478508 3478703 -138792741 + L1MC4a LINE L1 5674 5898 -1910 386 171 0 85 chr9 3478883 3478965 -138792479 - MER5B DNA MER1_type 0 178 104 249 290 176 51 chr9 3479174 3479350 -138792094 - MIR SINE MIR -45 217 20 337 261 76 8 chr9 3480288 3480407 -138791037 - L1ME4a LINE L1 -53 6068 5942 2585 36 3 7 chr9 3480412 3480717 -138790727 + AluY SINE Alu 1 304 -7 181 292 77 15 chr9 3481087 3481152 -138790292 - L3 LINE CR1 -1297 280 212 756 278 106 16 chr9 3481479 3481799 -138789645 - L2 LINE L2 -7 3306 2958 1504 215 7 7 chr9 3482024 3482312 -138789132 + AluJo SINE Alu 3 290 -22 264 30 0 0 chr9 3482485 3482518 -138788926 + (TG)n Simple_repeat Simple_repeat 2 34 0 715 236 0 8 chr9 3482717 3482844 -138788600 + FLAM_A SINE Alu 3 128 -5 2264 134 85 15 chr9 3484550 3485104 -138786340 - MER39 LTR ERV1 0 707 32 398 284 113 0 chr9 3485150 3485291 -138786153 - MIR SINE MIR -48 214 58 286 214 14 14 chr9 3485602 3485672 -138785772 + MIR SINE MIR 129 198 -64 544 276 46 46 chr9 3486971 3487014 -138784430 - MIR SINE MIR -64 198 156 1541 171 100 10 chr9 3487014 3487324 -138784120 - MER44D DNA MER2_type 0 609 2 544 276 46 46 chr9 3487324 3487476 -138783968 - MIR SINE MIR -105 157 3 211 182 0 0 chr9 3487524 3487557 -138783887 + polypurine Low_complexity Low_complexity 4 36 0 242 262 56 19 chr9 3487926 3488033 -138783411 + L1ME LINE L1 5314 5424 -2384 1301 211 57 82 chr9 3488037 3488285 -138783159 - MLT1C LTR MaLR -5 462 230 378 0 0 0 chr9 3488285 3488327 -138783117 + (TG)n Simple_repeat Simple_repeat 2 43 0 1301 211 57 82 chr9 3488327 3488552 -138782892 - MLT1C LTR MaLR -237 230 1 2313 118 0 0 chr9 3488825 3489130 -138782314 + AluSq SINE Alu 1 305 -8 21 0 0 0 chr9 3489320 3489341 -138782103 + AT_rich Low_complexity Low_complexity 1 21 0 1942 167 139 54 chr9 3489633 3489861 -138781583 + MER39 LTR ERV1 4 211 -496 2281 169 39 10 chr9 3489861 3490246 -138781198 + MSTD LTR MaLR 1 396 0 1942 167 139 54 chr9 3490246 3490633 -138780811 + MER39 LTR ERV1 211 707 0 829 288 99 20 chr9 3491799 3492153 -138779291 - L1ME3A LINE L1 -60 6110 5729 246 291 55 18 chr9 3492617 3492727 -138778717 + L1ME LINE L1 5532 5645 -476 243 374 61 8 chr9 3492821 3492952 -138778492 - L2 LINE L2 -1 3271 3134 1516 185 10 17 chr9 3493034 3493326 -138778118 - AluJo SINE Alu -18 294 5 368 40 20 0 chr9 3493329 3493379 -138778065 + (TTTA)n Simple_repeat Simple_repeat 1 51 0 524 117 0 0 chr9 3493479 3493556 -138777888 - L1M4 LINE L1 -863 5283 5207 1527 276 29 40 chr9 3493556 3494074 -138777370 - LTR40a LTR ERVL 0 519 8 371 242 32 24 chr9 3494084 3494208 -138777236 - L1ME3A LINE L1 -940 5206 5082 2734 193 46 48 chr9 3494212 3494232 -138777212 - L1ME3A LINE L1 -1022 5124 5105 2341 97 3 0 chr9 3494232 3494531 -138776913 - AluSp SINE Alu -13 300 1 2734 193 46 48 chr9 3494531 3495247 -138776197 - L1ME3A LINE L1 -1041 5105 4389 317 194 216 37 chr9 3495249 3495383 -138776061 - L1ME3A LINE L1 -3851 2295 2138 2061 128 7 3 chr9 3495865 3496170 -138775274 - AluSx SINE Alu -6 306 1 3985 129 48 12 chr9 3497478 3497953 -138773491 + L1MA6 LINE L1 5633 6138 -162 2631 168 12 16 chr9 3497953 3498381 -138773063 + MSTB LTR MaLR 1 426 0 3985 129 48 12 chr9 3498381 3498550 -138772894 + L1MA6 LINE L1 6138 6300 0 346 220 119 90 chr9 3498635 3498812 -138772632 - Charlie8 DNA MER1_type -2164 253 72 2259 99 3 0 chr9 3498962 3499256 -138772188 + AluSx SINE Alu 1 295 -17 324 284 10 49 chr9 3499883 3499985 -138771459 - MIR SINE MIR -161 101 4 244 322 8 50 chr9 3500017 3500138 -138771306 - MIR SINE MIR -63 145 30 986 291 76 46 chr9 3500241 3501188 -138770256 + MERVL LTR ERVL 4156 5209 -555 272 241 76 0 chr9 3501451 3501530 -138769914 + LTR33 LTR ERVL 419 503 -18 2193 113 10 0 chr9 3502658 3502960 -138768484 - AluSg SINE Alu -4 306 2 333 0 0 0 chr9 3503100 3503137 -138768307 + (TA)n Simple_repeat Simple_repeat 2 38 0 448 195 98 32 chr9 3503159 3503282 -138768162 + L1ME1 LINE L1 6036 6166 0 27 0 0 0 chr9 3503855 3503882 -138767562 + AT_rich Low_complexity Low_complexity 1 27 0 23 0 0 0 chr9 3504834 3504857 -138766587 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr9 3511233 3511259 -138760185 + AT_rich Low_complexity Low_complexity 1 26 0 480 273 101 38 chr9 3515242 3515451 -138755993 + MARNA DNA Mariner 11 232 -354 509 296 94 31 chr9 3515525 3515748 -138755696 + MARNA DNA Mariner 328 564 -22 316 122 0 0 chr9 3515760 3515809 -138755635 - MADE1 DNA Mariner -31 49 1 298 241 0 0 chr9 3516800 3516858 -138754586 - L2 LINE L2 0 3313 3256 1722 100 120 12 chr9 3517177 3517431 -138754013 + AluSg SINE Alu 1 283 -23 294 95 0 0 chr9 3517431 3517473 -138753971 + (CAAG)n Simple_repeat Simple_repeat 2 43 0 468 321 92 22 chr9 3517725 3517996 -138753448 + L2 LINE L2 3024 3313 0 254 190 10 30 chr9 3518163 3518263 -138753181 + GA-rich Low_complexity Low_complexity 1 98 0 263 233 0 17 chr9 3519196 3519256 -138752188 + MIR SINE MIR 203 261 -1 811 238 23 0 chr9 3519573 3519745 -138751699 - MER58A DNA MER1_type -1 223 48 1762 152 11 11 chr9 3519746 3520057 -138751387 + AluJb SINE Alu 1 311 0 330 261 0 0 chr9 3520086 3520151 -138751293 - MER58A DNA MER1_type -42 65 1 1599 188 84 81 chr9 3520835 3521343 -138750101 - MLT1D LTR MaLR 0 549 1 358 321 38 47 chr9 3522982 3523194 -138748250 - MIR SINE MIR -6 256 47 234 143 0 24 chr9 3523229 3523271 -138748173 + MIR SINE MIR 34 74 -188 822 95 0 0 chr9 3523277 3523382 -138748062 + AluJb SINE Alu 197 301 -11 1875 75 8 38 chr9 3524139 3524405 -138747039 + AluSp SINE Alu 44 301 -12 1680 258 131 28 chr9 3525075 3525698 -138745746 + MER115 DNA AcHobo 5 4029 -2 379 342 114 5 chr9 3527492 3527685 -138743759 + MIR SINE MIR 32 245 -17 29 78 0 0 chr9 3528291 3528355 -138743089 + AT_rich Low_complexity Low_complexity 1 64 0 39 22 0 0 chr9 3528639 3528685 -138742759 + AT_rich Low_complexity Low_complexity 1 46 0 737 253 43 74 chr9 3529254 3529382 -138742062 + MIR SINE MIR 8 126 -136 2286 98 0 13 chr9 3529382 3529698 -138741746 - AluSx SINE Alu 0 312 1 737 253 43 74 chr9 3529698 3529826 -138741618 + MIR SINE MIR 126 256 -6 603 268 41 130 chr9 3529952 3530344 -138741100 + L2 LINE L2 2914 3270 -2 319 324 36 18 chr9 3530351 3530462 -138740982 - MIR SINE MIR -66 142 30 381 316 85 32 chr9 3530583 3530920 -138740524 - L2 LINE L2 -225 3047 2682 248 314 25 17 chr9 3530938 3531056 -138740388 - L2 LINE L2 -797 2517 2399 641 239 97 85 chr9 3532735 3532982 -138738462 + MIR SINE MIR 12 261 -1 23 68 0 0 chr9 3534277 3534321 -138737123 + AT_rich Low_complexity Low_complexity 1 44 0 225 65 0 0 chr9 3534422 3534453 -138736991 + (TG)n Simple_repeat Simple_repeat 2 32 0 188 353 77 47 chr9 3534718 3534888 -138736556 + MIR SINE MIR 32 206 -56 24 0 0 0 chr9 3535332 3535356 -138736088 + AT_rich Low_complexity Low_complexity 1 24 0 25 31 0 0 chr9 3535701 3535733 -138735711 + AT_rich Low_complexity Low_complexity 1 32 0 644 265 127 38 chr9 3535740 3536229 -138735215 + L1ME4a LINE L1 5361 5894 -227 508 235 23 65 chr9 3536383 3536600 -138734844 + L1ME4a LINE L1 5676 5883 -238 1413 174 57 14 chr9 3536746 3537028 -138734416 - AluJo SINE Alu -18 294 1 24 0 0 0 chr9 3537069 3537093 -138734351 + AT_rich Low_complexity Low_complexity 1 24 0 2081 82 4 0 chr9 3537233 3537500 -138733944 - AluSp SINE Alu -4 309 42 917 309 91 9 chr9 3537613 3538133 -138733311 - L2 LINE L2 -3 3310 2738 1212 106 0 0 chr9 3539935 3540096 -138731348 - AluY SINE Alu -16 295 135 210 73 0 98 chr9 3541295 3541336 -138730108 + MER5B DNA MER1_type 25 61 -117 2296 74 0 13 chr9 3541365 3541663 -138729781 - AluY SINE Alu -17 294 1 222 304 20 29 chr9 3541681 3541783 -138729661 - MER5B DNA MER1_type -72 106 6 846 260 0 6 chr9 3541823 3541996 -138729448 - MER5A DNA MER1_type -16 173 2 213 336 136 9 chr9 3543467 3543577 -138727867 + MIR3 SINE MIR 31 154 -54 250 296 178 46 chr9 3543794 3543946 -138727498 + L2 LINE L2 2247 2418 -896 286 205 47 24 chr9 3544164 3544291 -138727153 + (TA)n Simple_repeat Simple_repeat 2 131 0 321 272 73 32 chr9 3544294 3544540 -138726904 - L1ME4a LINE L1 -161 5960 5705 201 171 0 0 chr9 3545835 3545870 -138725574 + (TA)n Simple_repeat Simple_repeat 2 36 0 256 191 43 0 chr9 3546231 3546325 -138725119 + (TA)n Simple_repeat Simple_repeat 2 99 0 4580 189 18 9 chr9 3546515 3547590 -138723854 - L1MB8 LINE L1 0 6178 5102 379 303 45 30 chr9 3547957 3548089 -138723355 - MIR SINE MIR -128 134 1 1204 282 80 16 chr9 3549082 3549568 -138721876 + LTR33 LTR ERVL 1 517 -4 26 30 0 0 chr9 3549673 3549706 -138721738 + AT_rich Low_complexity Low_complexity 1 33 0 412 289 0 0 chr9 3549914 3550018 -138721426 - MIR SINE MIR -11 251 148 256 196 0 0 chr9 3550432 3550483 -138720961 + MER3 DNA MER1_type 1 51 -158 * 803 237 41 0 chr9 3550480 3550674 -138720770 + MER3 DNA MER1_type 7 208 -1 22 35 0 0 chr9 3553333 3553362 -138718082 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr9 3553694 3553715 -138717729 + AT_rich Low_complexity Low_complexity 1 21 0 767 57 33 8 chr9 3555445 3555567 -138715877 + (GAAA)n Simple_repeat Simple_repeat 2 126 0 584 171 13 26 chr9 3556812 3556964 -138714480 + CT-rich Low_complexity Low_complexity 3 152 0 2264 101 0 3 chr9 3558967 3559264 -138712180 + AluSx SINE Alu 5 300 -12 249 167 0 0 chr9 3560219 3560273 -138711171 + (TA)n Simple_repeat Simple_repeat 2 55 0 587 285 54 51 chr9 3560292 3560643 -138710801 - L1MC4a LINE L1 -157 5964 5610 210 150 0 0 chr9 3562035 3562075 -138709369 + (CA)n Simple_repeat Simple_repeat 1 40 0 30 59 0 0 chr9 3562289 3562340 -138709104 + AT_rich Low_complexity Low_complexity 1 51 0 275 246 85 0 chr9 3563713 3563831 -138707613 - L1ME4a LINE L1 -30 6091 5964 329 349 48 27 chr9 3566041 3566187 -138705257 + MER5B DNA MER1_type 1 149 -29 215 150 50 100 chr9 3566439 3566499 -138704945 - L2 LINE L2 -8 3305 3249 465 287 0 9 chr9 3567898 3568013 -138703431 - L2 LINE L2 0 3272 3159 392 252 29 10 chr9 3568720 3568823 -138702621 - MIR SINE MIR -56 206 102 504 244 78 0 chr9 3569319 3569434 -138702010 + MIR3 SINE MIR 81 204 -4 24 0 0 0 chr9 3571710 3571734 -138699710 + AT_rich Low_complexity Low_complexity 1 24 0 227 224 86 0 chr9 3572821 3572879 -138698565 + MIR SINE MIR 61 123 -85 356 125 16 0 chr9 3572971 3573035 -138698409 + (TCCA)n Simple_repeat Simple_repeat 4 68 0 23 0 0 0 chr9 3574582 3574605 -138696839 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr9 3574670 3574698 -138696746 + AT_rich Low_complexity Low_complexity 1 28 0 263 200 20 0 chr9 3576204 3576254 -138695190 + MER34 LTR ERV1 1 51 -491 1491 175 69 102 chr9 3576265 3576464 -138694980 + MER39 LTR ERV1 232 436 -271 1972 107 0 24 chr9 3576464 3576818 -138694626 + AluSx SINE Alu 1 347 0 1491 175 69 102 chr9 3576818 3577109 -138694335 + MER39 LTR ERV1 436 707 0 1949 101 14 22 chr9 3577196 3577473 -138693971 + AluSc SINE Alu 35 309 0 222 91 0 0 chr9 3578124 3578157 -138693287 + (TG)n Simple_repeat Simple_repeat 2 34 0 304 341 30 22 chr9 3579785 3579920 -138691524 - L2 LINE L2 -19 3294 3159 24 32 0 0 chr9 3579986 3580017 -138691427 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr9 3581292 3581314 -138690130 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr9 3581550 3581579 -138689865 + AT_rich Low_complexity Low_complexity 1 29 0 207 139 0 0 chr9 3581919 3581955 -138689489 + (TA)n Simple_repeat Simple_repeat 1 36 0 33 43 0 0 chr9 3583452 3583499 -138687945 + AT_rich Low_complexity Low_complexity 1 47 0 665 195 0 9 chr9 3583855 3583968 -138687476 - L2 LINE L2 -1 3312 3201 21 36 0 0 chr9 3585833 3585861 -138685583 + AT_rich Low_complexity Low_complexity 1 28 0 186 43 0 0 chr9 3586831 3586854 -138684590 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 21 57 0 0 chr9 3588353 3588388 -138683056 + AT_rich Low_complexity Low_complexity 1 35 0 23 33 0 0 chr9 3589611 3589641 -138681803 + AT_rich Low_complexity Low_complexity 1 30 0 2156 106 43 37 chr9 3589874 3590224 -138681220 + THE1B LTR MaLR 11 362 -2 1632 29 0 10 chr9 3591943 3592147 -138679297 + L1PA4 LINE L1 5954 6155 0 2069 138 19 32 chr9 3592261 3592630 -138678814 + THE1B LTR MaLR 1 364 0 197 337 124 72 chr9 3592714 3592907 -138678537 - L2 LINE L2 -555 2759 2557 282 204 0 97 chr9 3595981 3596074 -138675370 - MIR SINE MIR -62 200 117 359 182 15 15 chr9 3596911 3596977 -138674467 + MER5A DNA MER1_type 3 68 -121 1948 119 7 4 chr9 3596986 3597263 -138674181 + AluSx SINE Alu 3 280 -32 667 251 44 35 chr9 3597381 3597584 -138673860 - MER112 DNA MER1_type 0 260 56 240 200 15 62 chr9 3597614 3597679 -138673765 - MER112 DNA MER1_type -175 85 24 630 85 0 30 chr9 3597974 3598075 -138673369 + L1PA5 LINE L1 10 398 -6063 * 38595 68 3 3 chr9 3598060 3603916 -138667528 + L1PA5 LINE L1 612 6469 0 28 0 0 0 chr9 3603916 3603944 -138667500 + AT_rich Low_complexity Low_complexity 1 28 0 658 217 90 6 chr9 3604551 3604717 -138666727 + MER5A DNA MER1_type 5 184 -5 203 371 21 50 chr9 3605079 3605219 -138666225 + L2 LINE L2 3123 3258 -14 1869 138 6 22 chr9 3605652 3605963 -138665481 + AluSx SINE Alu 1 306 -6 244 254 0 0 chr9 3606073 3606128 -138665316 - L1MC4 LINE L1 -1339 6703 6649 387 0 0 0 chr9 3606150 3606193 -138665251 + (TA)n Simple_repeat Simple_repeat 2 44 0 717 299 56 43 chr9 3606209 3606293 -138665151 - L1MC4 LINE L1 -2000 5808 5727 2030 113 14 7 chr9 3606293 3606585 -138664859 - AluSx SINE Alu -18 294 1 717 299 56 43 chr9 3606585 3606895 -138664549 - L1MC4 LINE L1 -2081 5727 5409 303 298 53 40 chr9 3606904 3607132 -138664312 - L1MC4 LINE L1 -818 5328 5098 455 280 98 43 chr9 3607231 3607831 -138663613 - L1MC4 LINE L1 -1207 4939 4284 2173 118 0 3 chr9 3607831 3608128 -138663316 + AluSx SINE Alu 1 296 -16 455 280 98 43 chr9 3608128 3608282 -138663162 - L1MC4 LINE L1 -1862 4284 4140 21 36 0 0 chr9 3609089 3609117 -138662327 + AT_rich Low_complexity Low_complexity 1 28 0 344 226 89 96 chr9 3609868 3610014 -138661430 + L1MC4a LINE L1 5820 5964 -1844 2179 105 0 10 chr9 3610062 3610376 -138661068 + AluSx SINE Alu 1 311 -1 28 0 0 0 chr9 3610769 3610797 -138660647 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr9 3611003 3611032 -138660412 + AT_rich Low_complexity Low_complexity 1 29 0 180 238 0 0 chr9 3611505 3611568 -138659876 + (TA)n Simple_repeat Simple_repeat 1 63 0 2967 84 10 0 chr9 3611714 3612119 -138659325 - L1PA12 LINE L1 -7 6161 5753 375 262 0 36 chr9 3613740 3613824 -138657620 - MIR3 SINE MIR -19 189 109 2227 112 0 10 chr9 3614504 3614817 -138656627 + AluSx SINE Alu 1 310 -2 305 176 15 0 chr9 3615087 3615155 -138656289 - MER113 DNA MER1_type? -408 113 45 459 282 107 38 chr9 3616417 3616679 -138654765 + L2 LINE L2 1709 1988 -1326 1788 151 71 0 chr9 3617549 3617886 -138653558 - MER46B DNA MER2_type 0 236 1 208 354 89 54 chr9 3617887 3618492 -138652952 + L2 LINE L2 2619 3244 -28 24 32 0 0 chr9 3618918 3618949 -138652495 + AT_rich Low_complexity Low_complexity 1 31 0 636 282 14 53 chr9 3619234 3619443 -138652001 - MIR SINE MIR -4 258 58 2065 98 14 11 chr9 3620219 3620534 -138650910 + AluSx SINE Alu 1 316 0 23 33 0 0 chr9 3620674 3620704 -138650740 + AT_rich Low_complexity Low_complexity 1 30 0 219 390 83 38 chr9 3621614 3622083 -138649361 - L2 LINE L2 0 3313 2824 495 268 52 7 chr9 3622111 3622264 -138649180 - MER112 DNA MER1_type -11 249 90 242 244 12 93 chr9 3622313 3622399 -138649045 - MER112 DNA MER1_type -181 79 1 780 274 98 57 chr9 3622794 3623235 -138648209 + LTR67 LTR ERVL 99 557 0 940 226 0 5 chr9 3623922 3624112 -138647332 - MER5A DNA MER1_type 0 189 1 2164 105 0 3 chr9 3624188 3624484 -138646960 + AluSg SINE Alu 1 295 -15 562 222 40 0 chr9 3624964 3625090 -138646354 - L2 LINE L2 -1 3312 3182 7570 35 0 0 chr9 3625119 3626795 -138644649 + L1PA4 LINE L1 4477 6152 -3 300 289 22 0 chr9 3626808 3626898 -138644546 - L2 LINE L2 -1393 1921 1830 273 282 56 0 chr9 3627005 3627076 -138644368 - L2 LINE L2 -1 3312 3238 21 36 0 0 chr9 3628032 3628060 -138643384 + AT_rich Low_complexity Low_complexity 1 28 0 1263 164 5 14 chr9 3629642 3629861 -138641583 - MER46A DNA MER2_type 0 236 20 281 356 25 19 chr9 3630912 3631072 -138640372 - MIR SINE MIR -27 235 75 297 231 26 39 chr9 3631135 3631213 -138640231 - L2 LINE L2 -40 3273 3197 24 32 0 0 chr9 3631492 3631523 -138639921 + AT_rich Low_complexity Low_complexity 1 31 0 2060 131 3 3 chr9 3632419 3632717 -138638727 + AluSx SINE Alu 1 298 -14 1972 248 66 106 chr9 3632879 3632922 -138638522 - L1MC5 LINE L1 -164 7797 7754 2051 125 3 10 chr9 3632922 3633218 -138638226 + AluSq SINE Alu 1 294 -19 1972 248 66 106 chr9 3633218 3635196 -138636248 - L1MC5 LINE L1 -207 7754 5848 5325 170 55 28 chr9 3635403 3636650 -138634794 + L1MC1 LINE L1 5042 6322 -11 22 0 0 0 chr9 3636724 3636746 -138634698 + AT_rich Low_complexity Low_complexity 1 22 0 207 0 0 0 chr9 3636853 3636876 -138634568 + (CAA)n Simple_repeat Simple_repeat 2 24 0 399 312 104 21 chr9 3636967 3637246 -138634198 + L1ME4a LINE L1 5257 5558 -612 237 243 40 59 chr9 3637428 3637580 -138633864 + L1ME4a LINE L1 5777 5925 -1883 210 284 15 0 chr9 3637587 3637654 -138633790 + (TA)n Simple_repeat Simple_repeat 2 69 0 234 225 0 67 chr9 3637657 3637746 -138633698 + L1ME4a LINE L1 5937 6019 -102 23 78 0 0 chr9 3637826 3637877 -138633567 + AT_rich Low_complexity Low_complexity 1 51 0 4144 264 113 50 chr9 3637977 3638259 -138633185 + L1MEc LINE L1 31 294 -5921 4089 27 0 0 chr9 3638259 3638738 -138632706 + L1PA3 LINE L1 5674 6152 -3 4144 264 113 50 chr9 3638738 3639683 -138631761 + L1MEc LINE L1 294 1178 -5037 334 265 0 0 chr9 3639683 3639766 -138631678 + FLAM SINE Alu 43 125 -8 4144 264 113 50 chr9 3639766 3641536 -138629908 + L1MEc LINE L1 1178 2836 -3379 471 35 0 0 chr9 3641536 3641593 -138629851 + (GGAA)n Simple_repeat Simple_repeat 1 57 0 4144 264 113 50 chr9 3641593 3642321 -138629123 + L1MEc LINE L1 2836 4042 -2173 438 69 0 0 chr9 3642321 3642379 -138629065 + (CA)n Simple_repeat Simple_repeat 2 59 0 4144 264 113 50 chr9 3642379 3642467 -138628977 + L1MEc LINE L1 4042 4123 -2092 26 30 0 0 chr9 3642785 3642818 -138628626 + AT_rich Low_complexity Low_complexity 1 33 0 465 174 58 0 chr9 3642826 3642947 -138628497 + L1M4 LINE L1 2904 3031 -3115 1735 145 20 3 chr9 3642956 3643259 -138628185 + L1MA4 LINE L1 5978 6285 -15 182 329 34 67 chr9 3643496 3643645 -138627799 + MIR SINE MIR 107 250 -12 2316 110 27 19 chr9 3644054 3644426 -138627018 - THE1C LTR MaLR 0 375 1 22 56 0 0 chr9 3645111 3645147 -138626297 + AT_rich Low_complexity Low_complexity 1 36 0 713 138 0 17 chr9 3646948 3647064 -138624380 + FLAM_C SINE Alu 28 141 -2 1616 160 4 0 chr9 3647079 3647356 -138624088 + AluJb SINE Alu 33 310 0 228 266 31 94 chr9 3648961 3649089 -138622355 - MIR SINE MIR -33 229 110 388 200 166 35 chr9 3649173 3649265 -138622179 - MER113 DNA MER1_type? 0 521 442 1997 131 0 7 chr9 3649265 3649556 -138621888 - AluSc SINE Alu -20 289 1 388 200 166 35 chr9 3649556 3649608 -138621836 - MER113 DNA MER1_type? -79 442 358 2214 81 14 3 chr9 3650402 3650697 -138620747 + AluSc SINE Alu 1 298 -11 298 314 62 67 chr9 3651382 3651592 -138619852 - MLT1I LTR MaLR -119 290 82 812 54 8 31 chr9 3652006 3652136 -138619308 + (TTTC)n Simple_repeat Simple_repeat 2 128 0 1430 251 115 6 chr9 3652472 3652971 -138618473 + MLT1E2 LTR MaLR 92 626 0 23 68 0 0 chr9 3653612 3653656 -138617788 + AT_rich Low_complexity Low_complexity 1 44 0 251 305 76 19 chr9 3654301 3654406 -138617038 + L2 LINE L2 3198 3308 -5 1722 185 55 9 chr9 3654528 3654874 -138616570 - MLT1A1 LTR MaLR -1 364 3 205 26 53 26 chr9 3655195 3655233 -138616211 + (TTTG)n Simple_repeat Simple_repeat 1 39 0 2133 41 3 45 chr9 3655235 3655525 -138615919 - AluY SINE Alu -33 278 1 30 0 0 0 chr9 3655563 3655593 -138615851 + AT_rich Low_complexity Low_complexity 1 30 0 42 20 0 0 chr9 3655847 3655896 -138615548 + AT_rich Low_complexity Low_complexity 1 49 0 497 218 80 80 chr9 3655901 3656089 -138615355 + L1ME2 LINE L1 5966 6153 -11 28 48 0 0 chr9 3656396 3656438 -138615006 + AT_rich Low_complexity Low_complexity 1 42 0 366 355 86 19 chr9 3657030 3657298 -138614146 + L3b LINE CR1 1105 1390 -193 1238 288 49 14 chr9 3657442 3657872 -138613572 + LTR16C LTR ERVL 43 487 -4 1832 109 0 117 chr9 3657920 3658270 -138613174 - AluSg1 SINE Alu 0 309 1 350 280 56 0 chr9 3658516 3658641 -138612803 + MER113 DNA MER1_type? 309 440 -81 289 255 143 0 chr9 3658880 3658978 -138612466 + MIR3 SINE MIR 74 185 -23 223 263 13 26 chr9 3659085 3659161 -138612283 + GA-rich Low_complexity Low_complexity 3 77 0 2062 111 0 0 chr9 3659181 3659461 -138611983 + AluY SINE Alu 1 280 -31 297 75 0 0 chr9 3659461 3659501 -138611943 + (CA)n Simple_repeat Simple_repeat 1 40 0 3729 126 52 56 chr9 3659505 3660237 -138611207 + L1MB2 LINE L1 5432 6164 -7 181 339 18 0 chr9 3660252 3660308 -138611136 + MIR3 SINE MIR 137 193 -15 2197 105 0 0 chr9 3661064 3661358 -138610086 + AluY SINE Alu 1 294 -17 2968 215 59 48 chr9 3661391 3661956 -138609488 + L1ME1 LINE L1 5318 5887 -279 7454 31 7 0 chr9 3661956 3662984 -138608460 + L1PA5 LINE L1 5119 6152 -2 2968 215 59 48 chr9 3662984 3663256 -138608188 + L1ME1 LINE L1 5887 6154 -12 297 179 38 19 chr9 3663315 3663421 -138608023 - Charlie7 DNA MER1_type -74 2538 2431 672 282 143 27 chr9 3663421 3663793 -138607651 - Charlie7 DNA MER1_type -1892 720 306 2163 131 3 0 chr9 3663929 3664241 -138607203 - AluSq SINE Alu 0 313 1 451 302 93 22 chr9 3664440 3664708 -138606736 - L2 LINE L2 0 3313 3027 411 21 0 0 chr9 3665265 3665313 -138606131 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 2083 108 10 7 chr9 3665316 3665612 -138605832 - AluSq SINE Alu -16 297 1 182 313 0 0 chr9 3665837 3665885 -138605559 + L2 LINE L2 3209 3256 -16 299 271 0 14 chr9 3665889 3665968 -138605476 - MIR SINE MIR -81 127 49 21 71 0 0 chr9 3666389 3666431 -138605013 + AT_rich Low_complexity Low_complexity 1 42 0 213 39 0 0 chr9 3667308 3667334 -138604110 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 22 0 0 0 chr9 3667381 3667403 -138604041 + AT_rich Low_complexity Low_complexity 1 22 0 712 186 23 8 chr9 3667450 3667579 -138603865 - FRAM SINE Alu -45 131 1 390 246 79 0 chr9 3668427 3668541 -138602903 - L1MC4 LINE L1 0 8042 7920 195 42 0 0 chr9 3669126 3669150 -138602294 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 345 289 96 26 chr9 3669839 3669995 -138601449 + MIR SINE MIR 96 262 0 208 348 79 22 chr9 3670159 3670386 -138601058 + L2 LINE L2 2835 3074 -239 1851 135 83 0 chr9 3670812 3671101 -138600343 + AluSp SINE Alu 1 313 0 200 213 0 0 chr9 3671670 3671717 -138599727 + (TAA)n Simple_repeat Simple_repeat 1 47 0 445 353 54 5 chr9 3671717 3671941 -138599503 - MIR SINE MIR 0 262 28 208 376 21 0 chr9 3672433 3672526 -138598918 + L2 LINE L2 2941 3035 -237 201 167 0 0 chr9 3672670 3672700 -138598744 + L2 LINE L2 3206 3235 -37 * 221 300 0 0 chr9 3672699 3672749 -138598695 - L3 LINE CR1 -469 1108 1059 23 0 0 0 chr9 3672749 3672772 -138598672 + AT_rich Low_complexity Low_complexity 1 23 0 1587 179 100 3 chr9 3674940 3675269 -138596175 + MER46B DNA MER2_type 1 236 0 742 124 0 18 chr9 3675505 3675618 -138595826 + THE1B LTR MaLR 1 111 -253 1678 93 0 72 chr9 3675622 3675900 -138595544 + THE1-int LTR MaLR 1 258 -1322 2179 133 8 31 chr9 3675913 3676273 -138595171 + THE1B LTR MaLR 13 364 0 368 17 317 0 chr9 3676290 3676350 -138595094 - MADE1 DNA Mariner 0 80 2 338 238 20 0 chr9 3677076 3677177 -138594267 - MER113 DNA MER1_type? -323 198 96 757 258 104 43 chr9 3677185 3678197 -138593247 + HAL1 LINE L1 380 1534 -973 488 244 18 18 chr9 3678184 3678348 -138593096 + HAL1 LINE L1 2022 2185 -322 * 186 43 0 0 chr9 3678431 3678454 -138592990 + (TGGG)n Simple_repeat Simple_repeat 1 23 0 446 291 20 45 chr9 3678514 3678713 -138592731 + HAL1 LINE L1 2285 2478 -29 21 36 0 0 chr9 3679104 3679132 -138592312 + AT_rich Low_complexity Low_complexity 1 28 0 1086 212 4 4 chr9 3679143 3679374 -138592070 + L1PB4 LINE L1 5925 6155 -1 21 36 0 0 chr9 3679530 3679558 -138591886 + AT_rich Low_complexity Low_complexity 1 28 0 2287 77 7 3 chr9 3679566 3679866 -138591578 + AluY SINE Alu 1 301 -10 204 312 205 9 chr9 3680365 3680580 -138590864 - L2 LINE L2 -5 3308 3052 328 217 0 72 chr9 3680647 3680730 -138590714 + L2 LINE L2 3232 3308 -5 6534 37 2 1 chr9 3681425 3682218 -138589226 - L1PA4 LINE L1 0 6155 5362 201 256 0 0 chr9 3682219 3682258 -138589186 + L3 LINE CR1 1526 1564 -13 410 296 140 34 chr9 3682885 3683064 -138588380 - MIR3 SINE MIR -9 199 2 457 297 30 30 chr9 3683156 3683321 -138588123 - MIR SINE MIR 0 262 98 352 254 164 0 chr9 3683370 3683480 -138587964 - Charlie8 DNA MER1_type -2190 227 100 632 0 0 0 chr9 3684236 3684312 -138587132 + L1HS LINE L1 6080 6155 0 312 282 55 55 chr9 3684407 3684537 -138586907 + Charlie8 DNA MER1_type 7 139 -202 2002 135 0 28 chr9 3684537 3684855 -138586589 + AluSq SINE Alu 1 309 -4 312 282 55 55 chr9 3684855 3684887 -138586557 + Charlie8 DNA MER1_type 138 169 -172 2168 111 3 0 chr9 3685054 3685352 -138586092 + AluSg SINE Alu 1 299 -11 380 211 0 0 chr9 3685500 3685576 -138585868 - MIR SINE MIR -106 156 81 850 258 41 9 chr9 3686134 3686355 -138585089 - MIR SINE MIR -33 229 2 32 26 0 0 chr9 3688035 3688074 -138583370 + AT_rich Low_complexity Low_complexity 1 39 0 446 295 54 63 chr9 3690235 3690550 -138580894 + L2 LINE L2 1762 2073 -1241 201 158 0 0 chr9 3690582 3690620 -138580824 + A-rich Low_complexity Low_complexity 5 42 0 216 367 0 46 chr9 3690700 3690809 -138580635 + L2 LINE L2 2207 2310 -1004 418 325 61 99 chr9 3691249 3691331 -138580113 + L2 LINE L2 2842 2926 -346 1695 165 3 25 chr9 3691331 3691646 -138579798 - AluJb SINE Alu -4 308 1 418 325 61 99 chr9 3691646 3692006 -138579438 + L2 LINE L2 2926 3267 -5 406 198 113 19 chr9 3692695 3692801 -138578643 - MIR SINE MIR -49 213 98 23 0 0 0 chr9 3692801 3692824 -138578620 + AT_rich Low_complexity Low_complexity 1 23 0 222 62 0 0 chr9 3693966 3693998 -138577446 + (TC)n Simple_repeat Simple_repeat 1 32 0 * 285 135 0 0 chr9 3693997 3694049 -138577395 + (CA)n Simple_repeat Simple_repeat 1 52 0 290 315 170 6 chr9 3695170 3695335 -138576109 - MIR3 SINE MIR -7 201 10 558 0 0 0 chr9 3695546 3695608 -138575836 + (TG)n Simple_repeat Simple_repeat 1 62 0 1472 175 77 0 chr9 3696754 3697039 -138574405 - AluJb SINE Alu -5 307 1 923 103 0 0 chr9 3697057 3697183 -138574261 - AluSq/x SINE Alu -180 132 7 298 370 82 32 chr9 3699406 3699625 -138571819 - MIR SINE MIR -13 249 20 307 247 78 0 chr9 3699884 3699961 -138571483 + L1MC4 LINE L1 6614 6696 -1346 624 219 0 0 chr9 3700031 3700200 -138571244 + (TA)n Simple_repeat Simple_repeat 2 170 0 302 247 0 62 chr9 3700201 3700298 -138571146 + L1MC4 LINE L1 6613 6703 -1339 216 216 0 0 chr9 3700301 3700352 -138571092 + (TA)n Simple_repeat Simple_repeat 2 52 0 244 254 0 0 chr9 3700614 3700669 -138570775 - L1MC4 LINE L1 -1339 6703 6649 387 0 0 0 chr9 3700691 3700734 -138570710 + (TA)n Simple_repeat Simple_repeat 1 43 0 707 301 56 43 chr9 3700750 3700834 -138570610 - L1MC4 LINE L1 -2000 5808 5727 2030 113 14 7 chr9 3700834 3701126 -138570318 - AluSx SINE Alu -18 294 1 707 301 56 43 chr9 3701126 3701436 -138570008 - L1MC4 LINE L1 -2081 5727 5409 596 281 107 48 chr9 3701772 3702372 -138569072 - L1MC4 LINE L1 -1207 4939 4283 2173 118 0 3 chr9 3702372 3702669 -138568775 + AluSx SINE Alu 1 296 -16 596 281 107 48 chr9 3702669 3702823 -138568621 - L1MC4 LINE L1 -1863 4283 4140 21 36 0 0 chr9 3703629 3703657 -138567787 + AT_rich Low_complexity Low_complexity 1 28 0 344 226 89 96 chr9 3704408 3704554 -138566890 + L1MC4a LINE L1 5820 5964 -1844 2179 105 0 10 chr9 3704602 3704916 -138566528 + AluSx SINE Alu 1 311 -1 28 0 0 0 chr9 3705309 3705337 -138566107 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr9 3705543 3705572 -138565872 + AT_rich Low_complexity Low_complexity 1 29 0 180 238 0 0 chr9 3706045 3706108 -138565336 + (TA)n Simple_repeat Simple_repeat 2 64 0 2906 89 10 2 chr9 3706254 3706660 -138564784 - L1PA12 LINE L1 -7 6161 5753 375 262 0 36 chr9 3708281 3708365 -138563079 - MIR3 SINE MIR -19 189 109 2227 112 0 10 chr9 3709045 3709358 -138562086 + AluSx SINE Alu 1 310 -2 305 176 15 0 chr9 3709628 3709696 -138561748 - MER113 DNA MER1_type? -408 113 45 459 282 107 38 chr9 3710958 3711220 -138560224 + L2 LINE L2 1709 1988 -1326 1788 151 71 0 chr9 3712090 3712427 -138559017 - MER46B DNA MER2_type 0 236 1 208 354 89 54 chr9 3712428 3713033 -138558411 + L2 LINE L2 2619 3244 -28 24 32 0 0 chr9 3713459 3713490 -138557954 + AT_rich Low_complexity Low_complexity 1 31 0 636 282 14 53 chr9 3713775 3713984 -138557460 - MIR SINE MIR -4 258 58 2065 98 14 11 chr9 3714760 3715075 -138556369 + AluSx SINE Alu 1 316 0 23 33 0 0 chr9 3715215 3715245 -138556199 + AT_rich Low_complexity Low_complexity 1 30 0 219 390 83 38 chr9 3716156 3716625 -138554819 - L2 LINE L2 0 3313 2824 495 268 52 7 chr9 3716653 3716806 -138554638 - MER112 DNA MER1_type -11 249 90 242 244 12 93 chr9 3716855 3716941 -138554503 - MER112 DNA MER1_type -181 79 1 780 274 98 57 chr9 3717336 3717777 -138553667 + LTR67 LTR ERVL 99 557 0 940 226 0 5 chr9 3718464 3718654 -138552790 - MER5A DNA MER1_type 0 189 1 2092 109 3 3 chr9 3718730 3719024 -138552420 + AluSg SINE Alu 1 294 -16 562 222 40 0 chr9 3719504 3719630 -138551814 - L2 LINE L2 -1 3312 3182 7504 36 2 1 chr9 3719659 3721336 -138550108 + L1PA4 LINE L1 4477 6155 0 328 217 0 72 chr9 3722031 3722114 -138549330 - L2 LINE L2 -5 3308 3232 204 312 205 9 chr9 3722181 3722396 -138549048 + L2 LINE L2 3052 3308 -5 2287 77 7 3 chr9 3722895 3723195 -138548249 - AluY SINE Alu -10 301 1 21 36 0 0 chr9 3723203 3723231 -138548213 + AT_rich Low_complexity Low_complexity 1 28 0 1086 212 4 4 chr9 3723387 3723618 -138547826 - L1PB4 LINE L1 -1 6155 5925 21 36 0 0 chr9 3723629 3723657 -138547787 + AT_rich Low_complexity Low_complexity 1 28 0 446 291 20 45 chr9 3724048 3724247 -138547197 - HAL1 LINE L1 -29 2478 2285 186 43 0 0 chr9 3724307 3724330 -138547114 + (CCCA)n Simple_repeat Simple_repeat 1 23 0 488 244 18 18 chr9 3724413 3724577 -138546867 - HAL1 LINE L1 -322 2185 2022 323 235 10 61 chr9 3724564 3724662 -138546782 - HAL1 LINE L1 -973 1534 1442 * 316 258 30 68 chr9 3724800 3724932 -138546512 + L1MC4 LINE L1 6595 6721 -1321 411 165 0 0 chr9 3724932 3725017 -138546427 + (TA)n Simple_repeat Simple_repeat 1 85 0 775 188 29 0 chr9 3725024 3725162 -138546282 - FRAM SINE Alu -36 140 1 376 279 124 25 chr9 3726031 3726192 -138545252 - MIR SINE MIR -84 178 2 2152 217 112 11 chr9 3726412 3727431 -138544013 + L1MEc LINE L1 1982 3049 -3166 720 271 15 73 chr9 3727857 3728130 -138543314 + MIR SINE MIR 6 262 0 2218 115 0 0 chr9 3728160 3728465 -138542979 - AluSx SINE Alu -7 305 1 21 36 0 0 chr9 3729112 3729140 -138542304 + AT_rich Low_complexity Low_complexity 1 28 0 511 156 0 7 chr9 3729419 3729543 -138541901 + MER2 DNA MER2_type 1 204 -141 303 111 74 25 chr9 3729543 3729624 -138541820 - L1MA4A LINE L1 0 6303 6219 303 291 0 38 chr9 3729633 3729712 -138541732 + MER2 DNA MER2_type 270 345 0 404 205 47 94 chr9 3730228 3730355 -138541089 - MIR SINE MIR -56 206 86 286 327 77 0 chr9 3731369 3731473 -138539971 - MIR SINE MIR -40 222 111 24 0 0 0 chr9 3732688 3732712 -138538732 + AT_rich Low_complexity Low_complexity 1 24 0 2027 197 96 48 chr9 3732940 3733545 -138537899 + L1ME1 LINE L1 5504 6137 -29 320 77 19 0 chr9 3733546 3733598 -138537846 + (TA)n Simple_repeat Simple_repeat 2 54 0 2184 88 0 0 chr9 3733651 3733948 -138537496 + AluY SINE Alu 1 297 -14 2677 19 3 0 chr9 3734424 3734734 -138536710 - AluY SINE Alu 0 311 1 1542 167 13 39 chr9 3735022 3735328 -138536116 + AluJb SINE Alu 1 298 -14 664 249 63 34 chr9 3735706 3736056 -138535388 - L1ME LINE L1 -4879 1663 1304 257 191 0 0 chr9 3736214 3736261 -138535183 - MLT1K LTR MaLR -55 533 487 1110 135 30 30 chr9 3736299 3736499 -138534945 - L1MA5A LINE L1 -23 6274 6075 3203 116 18 60 chr9 3736499 3737049 -138534395 + MER1A DNA MER1_type 1 527 0 261 308 43 16 chr9 3737065 3737250 -138534194 - L1ME LINE L1 -5234 1400 1211 301 79 103 18 chr9 3737280 3737445 -138533999 + (TA)n Simple_repeat Simple_repeat 2 180 0 201 137 77 0 chr9 3737465 3737582 -138533862 + (TA)n Simple_repeat Simple_repeat 2 127 0 755 340 25 14 chr9 3737872 3738240 -138533204 - L1ME LINE L1 -5954 871 500 352 118 118 118 chr9 3738981 3739074 -138532370 - ORSL DNA AcHobo 0 275 183 2562 34 0 0 chr9 3739100 3739396 -138532048 - AluY SINE Alu -15 296 1 215 127 18 36 chr9 3739461 3739516 -138531928 + (TATAA)n Simple_repeat Simple_repeat 3 56 0 192 284 84 84 chr9 3740401 3740496 -138530948 + MIR SINE MIR 38 132 -76 14025 129 29 104 chr9 3740764 3743702 -138527742 + Tigger2 DNA MER2_type 3 2718 0 1107 185 25 0 chr9 3743865 3744065 -138527379 - MER58A DNA MER1_type -19 205 1 414 230 30 10 chr9 3744123 3744223 -138527221 - MER5A DNA MER1_type -79 110 9 355 298 8 58 chr9 3744237 3744358 -138527086 + L2 LINE L2 3199 3313 0 226 396 9 0 chr9 3744594 3744700 -138526744 + L2 LINE L2 2877 2983 -289 4211 121 65 8 chr9 3744845 3745557 -138525887 - Tigger3(Golem) DNA MER2_type -1 3028 2277 652 185 0 0 chr9 3745548 3745656 -138525788 - Tigger3(Golem) DNA MER2_type -2921 108 1 * 369 280 21 0 chr9 3745721 3745814 -138525630 + L2 LINE L2 3178 3272 0 207 0 0 0 chr9 3745877 3745900 -138525544 + (A)n Simple_repeat Simple_repeat 1 23 0 23 0 0 0 chr9 3747012 3747035 -138524409 + AT_rich Low_complexity Low_complexity 1 23 0 6811 240 124 21 chr9 3748493 3751165 -138520279 + L1ME1 LINE L1 2125 5074 -1141 3474 212 128 70 chr9 3751164 3751382 -138520062 + L1MC3 LINE L1 6371 6575 -1210 * 216 0 0 0 chr9 3751382 3751406 -138520038 + (GA)n Simple_repeat Simple_repeat 1 24 0 3474 212 128 70 chr9 3751406 3751903 -138519541 + L1MC3 LINE L1 6575 7042 -743 289 310 0 0 chr9 3751903 3751974 -138519470 + MLT1F1 LTR MaLR 64 134 -433 3474 212 128 70 chr9 3751974 3751991 -138519453 + L1MC3 LINE L1 7042 7057 -728 2226 95 0 0 chr9 3751991 3752296 -138519148 + AluSq SINE Alu 1 305 0 3474 212 128 70 chr9 3752296 3752827 -138518617 + L1MC3 LINE L1 7057 7784 -1 3170 214 59 29 chr9 3752823 3753265 -138518179 + L1ME1 LINE L1 5061 5488 -747 * 5180 84 13 0 chr9 3753265 3753963 -138517481 - L1PA11 LINE L1 0 6174 5468 3170 214 59 29 chr9 3753963 3754673 -138516771 + L1ME1 LINE L1 5488 6230 -5 737 318 32 48 chr9 3754691 3755065 -138516379 + L3 LINE CR1 1183 1550 -27 230 301 126 7 chr9 3755394 3755537 -138515907 - MIR SINE MIR 0 262 103 504 374 161 15 chr9 3755808 3756212 -138515232 + L2 LINE L2 2810 3272 0 1523 188 3 24 chr9 3758663 3758951 -138512493 - AluJo SINE Alu -30 282 1 461 260 64 46 chr9 3759171 3759344 -138512100 + MIR SINE MIR 70 245 -17 1632 150 25 50 chr9 3759709 3760029 -138511415 + AluJo SINE Alu 1 312 0 22 0 0 0 chr9 3760258 3760280 -138511164 + AT_rich Low_complexity Low_complexity 1 22 0 202 244 0 0 chr9 3760504 3760549 -138510895 + T-rich Low_complexity Low_complexity 1 45 0 1715 161 40 83 chr9 3761063 3761395 -138510049 + L1MC3 LINE L1 6696 7008 -777 1768 143 32 4 chr9 3761395 3761674 -138509770 + AluJb SINE Alu 1 287 -25 1715 161 40 83 chr9 3761674 3761762 -138509682 + L1MC3 LINE L1 7008 7098 -687 246 284 0 15 chr9 3761762 3761829 -138509615 + MLT1F1 LTR MaLR 45 110 -457 608 144 0 9 chr9 3761853 3761964 -138509480 + L1MC3 LINE L1 7674 7783 -2 1468 196 0 8 chr9 3762440 3762705 -138508739 + AluJo SINE Alu 1 263 -49 453 290 30 8 chr9 3763143 3763274 -138508170 + MIR SINE MIR 98 231 -31 2108 114 0 33 chr9 3763555 3763861 -138507583 + AluSx SINE Alu 6 301 -11 38 22 0 0 chr9 3763978 3764023 -138507421 + AT_rich Low_complexity Low_complexity 1 45 0 250 272 161 44 chr9 3764910 3765101 -138506343 - MIR3 SINE MIR -46 216 3 234 365 65 35 chr9 3765163 3765363 -138506081 + L2 LINE L2 2624 2829 -485 216 0 0 0 chr9 3765494 3765518 -138505926 + (TTCCC)n Simple_repeat Simple_repeat 4 27 0 291 278 15 91 chr9 3765535 3765733 -138505711 + L2 LINE L2 3083 3265 -48 1242 305 165 46 chr9 3765917 3766028 -138505416 - L3 LINE CR1 -471 1106 1010 850 212 111 49 chr9 3766028 3766372 -138505072 - MLT1A1 LTR MaLR 0 365 1 1242 305 165 46 chr9 3766372 3766998 -138504446 - L3 LINE CR1 -567 1010 233 2306 96 20 0 chr9 3766998 3767301 -138504143 + AluSc SINE Alu 1 309 0 1242 305 165 46 chr9 3767301 3767493 -138503951 - L3 LINE CR1 -1344 233 65 407 351 100 41 chr9 3767895 3768214 -138503230 - L2 LINE L2 -1 3271 2934 203 417 10 0 chr9 3769048 3769144 -138502300 + L3 LINE CR1 1472 1568 -9 21 0 0 0 chr9 3770555 3770576 -138500868 + AT_rich Low_complexity Low_complexity 1 21 0 45 0 0 0 chr9 3771202 3771247 -138500197 + AT_rich Low_complexity Low_complexity 1 45 0 4259 228 89 37 chr9 3772165 3773801 -138497643 + L1ME1 LINE L1 3591 5310 -836 1435 178 4 12 chr9 3773820 3774079 -138497365 + AluJo SINE Alu 1 257 -55 3111 200 71 28 chr9 3774098 3774912 -138496532 + L1ME1 LINE L1 5313 6161 -5 1974 149 0 41 chr9 3775419 3775735 -138495709 - AluSx SINE Alu -9 303 1 237 339 73 40 chr9 3776349 3776473 -138494971 - MIR3 SINE MIR -66 142 15 21 36 0 0 chr9 3776512 3776540 -138494904 + AT_rich Low_complexity Low_complexity 1 28 0 280 91 436 0 chr9 3776640 3776695 -138494749 - MADE1 DNA Mariner -1 79 1 244 267 0 0 chr9 3777167 3777257 -138494187 + L1MC4 LINE L1 6614 6703 -1339 310 228 33 43 chr9 3777278 3777370 -138494074 + L1MC4 LINE L1 6612 6702 -1340 235 225 22 67 chr9 3777389 3777478 -138493966 - L1MC4 LINE L1 -1339 6703 6619 285 98 0 0 chr9 3778947 3778988 -138492456 + (A)n Simple_repeat Simple_repeat 1 41 0 674 37 0 0 chr9 3779913 3779994 -138491450 + AluSg/x SINE Alu 216 296 -13 2403 62 0 43 chr9 3780435 3780759 -138490685 - AluY SINE Alu -1 310 1 274 233 14 41 chr9 3780949 3781022 -138490422 + MIR3 SINE MIR 127 197 -11 280 266 127 52 chr9 3781123 3781296 -138490148 - MIR SINE MIR -41 221 36 449 268 45 76 chr9 3781390 3781588 -138489856 - MIR SINE MIR -70 192 1 548 300 68 11 chr9 3782373 3782563 -138488881 + MIR SINE MIR 4 204 -58 764 169 22 7 chr9 3784104 3784240 -138487204 - MER5A DNA MER1_type -51 138 1 294 276 114 16 chr9 3784697 3784820 -138486624 - MIR SINE MIR -105 157 23 1982 146 3 13 chr9 3784946 3785261 -138486183 + AluJo SINE Alu 1 312 0 6591 66 6 75 chr9 3785344 3786328 -138485116 - LTR13 LTR ERVK 0 1007 92 822 124 23 0 chr9 3786332 3786461 -138484983 - LTR13 LTR ERVK -875 132 1 563 295 68 11 chr9 3786960 3787150 -138484294 + MIR SINE MIR 4 204 -58 1474 223 117 7 chr9 3787386 3787812 -138483632 - L1M4c LINE L1 -4550 1834 1362 210 270 48 0 chr9 3789361 3789424 -138482020 + MIR3 SINE MIR 90 155 -53 334 210 151 8 chr9 3789452 3789571 -138481873 - MIR SINE MIR -16 246 111 270 0 0 0 chr9 3790267 3790297 -138481147 + (T)n Simple_repeat Simple_repeat 1 30 0 1664 161 124 16 chr9 3790461 3790847 -138480597 + MSTA LTR MaLR 1 428 0 2293 85 7 0 chr9 3792216 3792510 -138478934 + AluSp SINE Alu 1 296 -17 955 203 77 55 chr9 3792514 3792565 -138478879 + L1ME2 LINE L1 5730 5778 -386 1668 195 7 10 chr9 3792565 3792872 -138478572 + AluJo SINE Alu 1 306 -6 955 203 77 55 chr9 3792872 3793130 -138478314 + L1ME2 LINE L1 5778 6046 -118 706 222 124 0 chr9 3793130 3793315 -138478129 - MER3 DNA MER1_type 0 209 2 488 210 24 12 chr9 3794248 3794415 -138477029 + CT-rich Low_complexity Low_complexity 6 174 0 459 0 0 0 chr9 3796930 3796981 -138474463 + (CA)n Simple_repeat Simple_repeat 1 51 0 35 24 0 0 chr9 3797588 3797630 -138473814 + GC_rich Low_complexity Low_complexity 1 42 0 277 242 0 0 chr9 3797760 3797826 -138473618 + (CA)n Simple_repeat Simple_repeat 1 66 0 290 26 26 0 chr9 3797904 3797943 -138473501 + (GGA)n Simple_repeat Simple_repeat 1 40 0 276 77 0 0 chr9 3798029 3798068 -138473376 + (GA)n Simple_repeat Simple_repeat 2 40 0 222 37 0 0 chr9 3798187 3798214 -138473230 + (CA)n Simple_repeat Simple_repeat 1 27 0 27 29 0 0 chr9 3799308 3799342 -138472102 + AT_rich Low_complexity Low_complexity 1 34 0 1499 208 10 17 chr9 3799783 3800071 -138471373 + AluJo SINE Alu 1 286 -26 1165 175 0 54 chr9 3800638 3800861 -138470583 - AluJo SINE Alu -17 295 85 733 247 123 0 chr9 3801044 3801271 -138470173 + MIR SINE MIR 8 262 0 1598 161 11 90 chr9 3802507 3802885 -138468559 - MER7A DNA MER2_type 0 346 1 412 288 106 8 chr9 3803458 3803590 -138467854 + MIR3 SINE MIR 59 203 -5 198 0 0 0 chr9 3804013 3804035 -138467409 + (GA)n Simple_repeat Simple_repeat 2 23 0 22 43 0 21 chr9 3804387 3804413 -138467031 + AT_rich Low_complexity Low_complexity 1 27 -19 2380 82 0 0 chr9 3804413 3804705 -138466739 + AluY SINE Alu 1 292 -19 22 43 0 21 chr9 3804705 3804725 -138466719 + AT_rich Low_complexity Low_complexity 27 46 0 21 36 0 0 chr9 3804874 3804902 -138466542 + AT_rich Low_complexity Low_complexity 1 28 0 1290 177 62 11 chr9 3806024 3806324 -138465120 + AluJb SINE Alu 13 325 0 23 68 0 0 chr9 3808198 3808242 -138463202 + AT_rich Low_complexity Low_complexity 1 44 0 1101 148 55 0 chr9 3808664 3808866 -138462578 - L1MA3 LINE L1 -1 6304 6092 282 233 140 107 chr9 3810775 3810925 -138460519 - MIR3 SINE MIR -25 183 29 210 37 0 0 chr9 3811783 3811810 -138459634 + (TG)n Simple_repeat Simple_repeat 2 28 0 184 375 0 0 chr9 3812759 3812815 -138458629 - L2 LINE L2 -69 3203 3148 1223 217 126 10 chr9 3812869 3813178 -138458266 - MER2 DNA MER2_type 0 345 1 505 278 176 14 chr9 3813185 3813401 -138458043 + MIR SINE MIR 12 262 0 214 258 0 0 chr9 3814036 3814102 -138457342 + (TA)n Simple_repeat Simple_repeat 1 66 0 22 0 0 0 chr9 3814533 3814555 -138456889 + AT_rich Low_complexity Low_complexity 1 22 0 533 242 32 112 chr9 3814752 3815091 -138456353 - L2 LINE L2 0 3313 3002 286 202 79 0 chr9 3815260 3815374 -138456070 + T-rich Low_complexity Low_complexity 5 127 0 3226 250 60 76 chr9 3815538 3817034 -138454410 - L1M4 LINE L1 -5057 1485 14 22 35 0 0 chr9 3817124 3817153 -138454291 + AT_rich Low_complexity Low_complexity 1 29 0 502 278 73 28 chr9 3817792 3818234 -138453210 - MLT1G1 LTR MaLR -11 584 45 367 277 20 68 chr9 3818427 3818575 -138452869 + MIR SINE MIR 71 211 -51 488 308 87 5 chr9 3818768 3818953 -138452491 - MIR SINE MIR 0 262 63 225 300 0 0 chr9 3818959 3819009 -138452435 + L2 LINE L2 3263 3312 -1 23 33 0 0 chr9 3819195 3819225 -138452219 + AT_rich Low_complexity Low_complexity 1 30 0 658 326 100 16 chr9 3819394 3819882 -138451562 + L1ME LINE L1 5268 5796 -325 346 249 116 52 chr9 3820908 3821081 -138450363 + MER20 DNA MER1_type 29 212 -7 233 212 212 0 chr9 3821093 3821159 -138450285 + L2 LINE L2 3229 3308 -5 208 287 161 0 chr9 3821463 3821550 -138449894 + MIR SINE MIR 12 112 -150 427 297 27 60 chr9 3821562 3821632 -138449812 + MIR SINE MIR 84 155 -107 766 248 97 19 chr9 3821632 3821942 -138449502 - MER46C DNA MER2_type 0 338 5 427 297 27 60 chr9 3821942 3822056 -138449388 + MIR SINE MIR 155 262 0 1251 176 9 94 chr9 3822518 3822836 -138448608 + AluJo SINE Alu 1 291 -21 28 48 0 0 chr9 3822836 3822878 -138448566 + AT_rich Low_complexity Low_complexity 1 42 0 297 315 79 0 chr9 3823008 3823135 -138448309 - MIR SINE MIR -6 256 120 2340 84 10 3 chr9 3823558 3823869 -138447575 + AluSp SINE Alu 1 313 0 769 163 0 15 chr9 3824736 3824871 -138446573 - FLAM_C SINE Alu 0 133 1 25 31 0 0 chr9 3825498 3825530 -138445914 + AT_rich Low_complexity Low_complexity 1 32 0 211 257 71 62 chr9 3825576 3825689 -138445755 + MIR SINE MIR 99 212 -50 21 57 0 0 chr9 3826824 3826859 -138444585 + AT_rich Low_complexity Low_complexity 1 35 0 26 64 0 0 chr9 3828133 3828180 -138443264 + AT_rich Low_complexity Low_complexity 1 47 0 21 57 0 0 chr9 3828509 3828544 -138442900 + AT_rich Low_complexity Low_complexity 1 35 0 235 191 12 143 chr9 3829791 3829875 -138441569 - L2 LINE L2 -14 3299 3227 322 320 55 17 chr9 3830057 3830238 -138441206 + MER115 DNA AcHobo 1 188 -505 545 306 120 45 chr9 3830291 3830667 -138440777 + MER115 DNA AcHobo 290 693 0 2375 70 3 0 chr9 3831118 3831416 -138440028 + AluY SINE Alu 1 299 -12 273 57 0 0 chr9 3831416 3831451 -138439993 + (TA)n Simple_repeat Simple_repeat 1 35 0 276 244 37 0 chr9 3832001 3832081 -138439363 - Charlie1 DNA MER1_type -10 2751 2669 504 248 62 76 chr9 3832081 3832291 -138439153 + MER63A DNA MER1_type 1 207 -3 947 182 148 14 chr9 3832293 3832584 -138438860 - Charlie1 DNA MER1_type -85 2676 2347 254 130 0 37 chr9 3832789 3832843 -138438601 + (TATATG)n Simple_repeat Simple_repeat 2 53 0 328 340 19 0 chr9 3834368 3834471 -138436973 - MIR SINE MIR -111 151 47 26 0 0 0 chr9 3837135 3837161 -138434283 + AT_rich Low_complexity Low_complexity 1 26 0 195 114 0 0 chr9 3837971 3838006 -138433438 + (CAAAG)n Simple_repeat Simple_repeat 5 39 0 2124 138 3 3 chr9 3839260 3839572 -138431872 - AluSx SINE Alu 0 312 1 25 0 0 0 chr9 3839577 3839602 -138431842 + AT_rich Low_complexity Low_complexity 1 25 0 2310 59 3 26 chr9 3839685 3839991 -138431453 + AluY SINE Alu 1 299 -12 21 36 0 0 chr9 3840987 3841015 -138430429 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr9 3841112 3841135 -138430309 + AT_rich Low_complexity Low_complexity 1 23 0 237 65 0 0 chr9 3841813 3841844 -138429600 + (TC)n Simple_repeat Simple_repeat 2 32 0 517 36 102 18 chr9 3841845 3842011 -138429433 + (TA)n Simple_repeat Simple_repeat 1 180 0 378 121 75 46 chr9 3842033 3842267 -138429177 + (TA)n Simple_repeat Simple_repeat 1 240 0 1652 173 7 3 chr9 3843398 3843682 -138427762 - AluJo SINE Alu -27 285 1 1306 44 0 0 chr9 3844491 3844651 -138426793 + L1PA5 LINE L1 5793 5952 -202 4420 157 32 11 chr9 3844751 3845573 -138425871 - L1MA8 LINE L1 -165 6126 5288 1881 141 7 14 chr9 3846348 3846639 -138424805 + AluSx SINE Alu 1 289 -23 263 220 0 30 chr9 3846919 3847019 -138424425 + (TA)n Simple_repeat Simple_repeat 2 98 0 368 304 36 60 chr9 3847191 3847527 -138423917 - L1ME4a LINE L1 -236 5885 5558 368 190 53 115 chr9 3847565 3847791 -138423653 + L2 LINE L2 2665 2876 -438 461 252 17 0 chr9 3847977 3848096 -138423348 + L2 LINE L2 3188 3308 -5 288 130 0 0 chr9 3848129 3848175 -138423269 + (T)n Simple_repeat Simple_repeat 1 46 0 283 286 75 20 chr9 3848410 3848557 -138422887 - L1ME1 LINE L1 -252 5914 5760 1063 175 14 28 chr9 3848918 3849129 -138422315 - MER3 DNA MER1_type -1 208 1 333 301 30 0 chr9 3849482 3849615 -138421829 - L1ME4a LINE L1 -218 5903 5767 262 179 0 71 chr9 3849699 3849755 -138421689 + AluJb SINE Alu 75 126 -176 23 54 0 0 chr9 3849955 3849992 -138421452 + AT_rich Low_complexity Low_complexity 1 37 0 386 196 82 10 chr9 3850853 3850950 -138420494 - MSTB LTR MaLR 0 426 323 19182 90 6 4 chr9 3850950 3853584 -138417860 + L1P LINE L1 31 2669 -3477 2038 163 70 0 chr9 3854444 3854813 -138416631 + MER57A LTR ERV1 8 402 -1 283 355 58 25 chr9 3854906 3855027 -138416417 - L2 LINE L2 0 3272 3148 491 271 79 22 chr9 3856214 3856443 -138415001 - L1MEd LINE L1 -4877 1242 1001 319 262 75 97 chr9 3856447 3856726 -138414718 - L1MEd LINE L1 -5161 958 686 317 343 36 29 chr9 3857694 3857834 -138413610 + MIR3 SINE MIR 2 142 -66 180 125 0 0 chr9 3857892 3857924 -138413520 + (A)n Simple_repeat Simple_repeat 1 32 0 402 332 111 5 chr9 3858924 3859141 -138412303 + MIR SINE MIR 10 249 -13 1108 257 49 18 chr9 3859261 3859713 -138411731 + L1M4 LINE L1 4247 4712 -1434 2040 86 0 0 chr9 3859713 3859969 -138411475 + AluY SINE Alu 37 292 -19 652 226 12 54 chr9 3861002 3861170 -138410274 - MER105 DNA DNA -42 162 2 339 182 0 0 chr9 3861808 3861863 -138409581 - Alu SINE Alu -244 56 2 621 296 62 33 chr9 3863117 3863357 -138408087 - MIR SINE MIR -14 248 2 402 299 52 52 chr9 3863863 3864057 -138407387 + L2 LINE L2 3120 3313 0 2272 98 0 3 chr9 3864116 3864411 -138407033 + AluSx SINE Alu 2 295 -17 511 326 80 46 chr9 3864411 3864801 -138406643 - L2 LINE L2 -21 3292 2890 1307 161 0 58 chr9 3864803 3865045 -138406399 + AluJo SINE Alu 85 312 0 1024 312 42 51 chr9 3865060 3865682 -138405762 - L2 LINE L2 -429 2885 2270 1850 258 43 11 chr9 3866272 3866998 -138404446 + L1MC/D LINE L1 3268 4016 -2130 829 187 0 20 chr9 3867003 3867153 -138404291 + AluJo SINE Alu 1 147 -165 186 43 0 0 chr9 3867177 3867200 -138404244 + (TAA)n Simple_repeat Simple_repeat 2 24 0 3273 235 67 17 chr9 3867204 3868546 -138402898 + L1MC/D LINE L1 4028 5434 -743 492 175 42 8 chr9 3868994 3869114 -138402330 - L1MA5 LINE L1 -29 6271 6148 319 338 80 0 chr9 3869207 3869358 -138402086 - MIR SINE MIR -1 261 99 258 32 0 0 chr9 3869513 3869544 -138401900 + (CA)n Simple_repeat Simple_repeat 2 32 0 208 170 57 0 chr9 3870016 3870069 -138401375 + (TAAA)n Simple_repeat Simple_repeat 2 57 0 288 226 16 0 chr9 3870095 3870157 -138401287 - MER2 DNA MER2_type 0 345 283 382 216 11 0 chr9 3870170 3870259 -138401185 - MER2 DNA MER2_type -150 89 1 3436 85 11 60 chr9 3870992 3871559 -138399885 - LTR10B LTR ERV1 0 547 9 26 64 0 0 chr9 3871663 3871710 -138399734 + AT_rich Low_complexity Low_complexity 1 47 0 25 31 0 0 chr9 3871761 3871793 -138399651 + AT_rich Low_complexity Low_complexity 1 32 0 275 263 246 0 chr9 3871957 3872071 -138399373 - L2 LINE L2 -4 3309 3168 500 313 74 16 chr9 3872554 3872797 -138398647 - MIR SINE MIR 0 262 6 2284 89 0 3 chr9 3872915 3873217 -138398227 - AluSx SINE Alu -10 302 2 1905 116 0 0 chr9 3874120 3874378 -138397066 - AluSc SINE Alu -17 292 35 2648 121 16 14 chr9 3875519 3875951 -138395493 + L1MA5A LINE L1 5852 6287 -10 1752 130 54 7 chr9 3875951 3876227 -138395217 - AluSg SINE Alu -21 289 1 2648 121 16 14 chr9 3876227 3876239 -138395205 + L1MA5A LINE L1 6287 6297 0 419 347 40 22 chr9 3876597 3876822 -138394622 + L2 LINE L2 2071 2299 -1015 258 331 90 34 chr9 3876947 3877084 -138394360 + MIR SINE MIR 20 171 -91 2398 75 0 31 chr9 3877084 3877402 -138394042 + AluY SINE Alu 1 308 -3 258 331 90 34 chr9 3877402 3877442 -138394002 + MIR SINE MIR 171 207 -55 603 212 71 88 chr9 3877592 3877759 -138393685 + L1MC3 LINE L1 6886 7045 -740 180 77 0 0 chr9 3877759 3877785 -138393659 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 603 212 71 88 chr9 3877785 3877956 -138393488 + L1MC3 LINE L1 7045 7218 -567 568 185 34 0 chr9 3877998 3878117 -138393327 + L1MC3 LINE L1 5857 5979 -1806 1032 171 0 30 chr9 3878117 3878316 -138393128 + L1MC3 LINE L1 7307 7499 -286 1857 163 32 29 chr9 3878326 3878882 -138392562 + MLT2A2 LTR ERVL 1 554 0 965 159 3 103 chr9 3878883 3879173 -138392271 + L1MC3 LINE L1 7507 7767 -18 2151 30 0 0 chr9 3880964 3881232 -138390212 - L1PA4 LINE L1 -173 5982 5715 1277 65 0 0 chr9 3881232 3881392 -138390052 + L1PA4 LINE L1 5986 6153 -2 2728 219 22 16 chr9 3881553 3881846 -138389598 - MER82 DNA MER2_type -5 648 358 2518 78 0 3 chr9 3881846 3882153 -138389291 + AluSq SINE Alu 3 308 -5 2728 219 22 16 chr9 3882153 3882499 -138388945 - MER82 DNA MER2_type -295 358 5 3308 158 18 1 chr9 3882553 3883248 -138388196 + L1P4 LINE L1 4739 5441 -727 3656 206 60 13 chr9 3883356 3885261 -138386183 - L1MC2 LINE L1 -296 6048 4046 2392 90 3 7 chr9 3885854 3886164 -138385280 - AluSq SINE Alu -4 309 1 2110 117 0 7 chr9 3886893 3887203 -138384241 + AluSg SINE Alu 1 308 0 232 262 19 0 chr9 3888507 3888610 -138382834 + GA-rich Low_complexity Low_complexity 2 106 0 382 304 249 33 chr9 3889293 3890439 -138381005 - L2 LINE L2 -189 3083 1684 1005 195 0 16 chr9 3890489 3890674 -138380770 + AluJo SINE Alu 123 304 -8 369 272 97 9 chr9 3893138 3893252 -138378192 - L2 LINE L2 -3 3310 3187 243 277 36 18 chr9 3893967 3894079 -138377365 + L1ME4a LINE L1 5966 6079 -42 192 40 0 0 chr9 3895376 3895401 -138376043 + (TTTTC)n Simple_repeat Simple_repeat 1 25 0 215 345 0 0 chr9 3896061 3896119 -138375325 + MIR SINE MIR 194 251 -11 1820 149 22 0 chr9 3896763 3897070 -138374374 + AluSx SINE Alu 2 314 0 1393 183 10 11 chr9 3897104 3897415 -138374029 + MLT1A1 LTR MaLR 1 358 -7 2736 3 0 0 chr9 3898301 3898619 -138372825 + L1PA2 LINE L1 5689 6006 -149 2566 56 0 0 chr9 3899157 3899459 -138371985 + AluY SINE Alu 1 302 -9 296 167 33 0 chr9 3899708 3899726 -138371718 - AluS SINE Alu -246 62 46 1672 107 9 0 chr9 3899726 3899951 -138371493 - AluSg/x SINE Alu -12 298 72 296 167 33 0 chr9 3899951 3899992 -138371452 - AluS SINE Alu -262 46 1 2203 135 125 2 chr9 3900429 3900971 -138370473 - MER39B LTR ERV1 0 653 1 2779 135 107 13 chr9 3901336 3901821 -138369623 - LTR24C LTR ERV1 -29 606 61 2136 142 3 0 chr9 3901821 3902131 -138369313 - AluSx SINE Alu -1 311 1 2779 135 107 13 chr9 3902131 3902199 -138369245 - LTR24C LTR ERV1 -574 61 1 506 203 152 7 chr9 3902281 3902419 -138369025 + MER5A DNA MER1_type 26 183 -6 262 44 22 22 chr9 3902605 3902650 -138368794 + (TTTG)n Simple_repeat Simple_repeat 3 47 0 233 331 164 28 chr9 3902840 3903127 -138368317 + L2 LINE L2 1125 1450 -1864 923 190 11 6 chr9 3903224 3903398 -138368046 - Tigger2 DNA MER2_type -2 2716 2542 320 134 0 0 chr9 3903477 3903544 -138367900 - Tigger2 DNA MER2_type -177 2541 2475 1955 139 0 0 chr9 3903545 3903812 -138367632 + AluSx SINE Alu 1 267 -45 1725 188 16 10 chr9 3903954 3904263 -138367181 + AluJb SINE Alu 1 311 -1 798 277 84 20 chr9 3904263 3904610 -138366834 - L1MCb LINE L1 -5104 941 573 1598 264 31 30 chr9 3904702 3905278 -138366166 - L1MCb LINE L1 -5467 578 2 2263 106 0 0 chr9 3905306 3905608 -138365836 - AluSx SINE Alu -10 302 1 209 405 0 17 chr9 3905645 3905761 -138365683 + L2 LINE L2 3154 3267 -5 202 160 40 0 chr9 3905766 3905816 -138365628 + (TGGA)n Simple_repeat Simple_repeat 3 54 0 186 71 48 24 chr9 3906313 3906355 -138365089 + (TA)n Simple_repeat Simple_repeat 1 43 0 2137 110 17 0 chr9 3906433 3906732 -138364712 + AluSx SINE Alu 3 306 -6 895 284 92 57 chr9 3906921 3907562 -138363882 - L2 LINE L2 -82 3231 2560 324 175 21 62 chr9 3910098 3910195 -138361249 - MER34B LTR ERV1 0 565 473 273 228 22 22 chr9 3910172 3910264 -138361180 - LTR48 LTR ERV1 -65 722 631 * 2107 142 0 0 chr9 3910269 3910578 -138360866 + AluSx SINE Alu 1 309 -3 1256 161 161 20 chr9 3911258 3911512 -138359932 + AluJo SINE Alu 1 290 -12 743 246 68 50 chr9 3913227 3913447 -138357997 + LTR33 LTR ERVL 1 224 -297 544 255 101 27 chr9 3913475 3913663 -138357781 + LTR33 LTR ERVL 312 513 -8 2208 142 31 29 chr9 3913694 3914075 -138357369 - MLT1B LTR MaLR -8 382 1 262 304 108 0 chr9 3914400 3914520 -138356924 + MLT1J LTR MaLR 38 131 -315 600 290 94 27 chr9 3914771 3914995 -138356449 - MIR SINE MIR -21 241 3 27969 33 3 1 chr9 3915074 3919274 -138352170 - L1PA4 LINE L1 -3 6152 1945 3414 234 95 26 chr9 3920318 3922164 -138349280 - L1ME1 LINE L1 -5 6161 4178 364 262 24 36 chr9 3922290 3922458 -138348986 - HAL1b LINE L1 -435 913 748 * 622 303 101 21 chr9 3922440 3922777 -138348667 + L1MEd LINE L1 6 369 -5750 497 171 0 0 chr9 3923183 3923259 -138348185 + AluJ/FLAM SINE Alu 6 81 -231 382 93 0 0 chr9 3923338 3923392 -138348052 + Alu SINE Alu 243 296 -6 182 333 56 0 chr9 3924139 3924229 -138347215 + MIR SINE MIR 49 143 -119 1963 117 4 0 chr9 3924461 3924734 -138346710 - AluSx SINE Alu 0 312 39 22 35 0 0 chr9 3924825 3924854 -138346590 + AT_rich Low_complexity Low_complexity 1 29 0 436 123 74 164 chr9 3925100 3925222 -138346222 + FRAM SINE Alu 49 159 -17 586 249 117 10 chr9 3925518 3925715 -138345729 - MIR SINE MIR 0 262 45 2091 137 0 0 chr9 3925777 3926070 -138345374 + AluY SINE Alu 1 293 -18 1492 130 0 5 chr9 3926316 3926532 -138344912 + AluSg/x SINE Alu 88 302 -10 509 379 86 19 chr9 3926545 3927078 -138344366 + L2 LINE L2 2268 2836 -478 272 368 40 0 chr9 3927497 3927622 -138343822 + L2 LINE L2 2907 3036 -236 684 325 51 0 chr9 3927632 3927869 -138343575 - MIR SINE MIR -3 259 11 2136 133 0 0 chr9 3928079 3928381 -138343063 + AluSg SINE Alu 1 302 -8 296 217 36 12 chr9 3929762 3929845 -138341599 + MLT1J1 LTR MaLR 360 444 -2 1428 167 0 0 chr9 3930279 3930495 -138340949 + AluJb SINE Alu 72 287 -25 32 0 0 0 chr9 3930885 3930917 -138340527 + AT_rich Low_complexity Low_complexity 1 32 0 1643 126 84 11 chr9 3930917 3931179 -138340265 - AluSx SINE Alu -31 281 1 520 265 90 90 chr9 3932305 3932716 -138338728 + MLT1J LTR MaLR 1 411 -100 502 254 24 102 chr9 3932921 3933126 -138338318 + MIR SINE MIR 20 208 -54 252 0 0 0 chr9 3933151 3933179 -138338265 + (CA)n Simple_repeat Simple_repeat 2 29 0 297 315 130 0 chr9 3933250 3933396 -138338048 + MIR3 SINE MIR 33 197 -11 313 281 30 85 chr9 3933430 3933582 -138337862 + L1ME3A LINE L1 5968 6108 -62 1731 204 66 75 chr9 3933582 3934141 -138337303 - MLT2B3 LTR ERVL 0 554 1 313 281 30 85 chr9 3934141 3934187 -138337257 + L1ME3A LINE L1 6108 6155 -15 2366 82 3 0 chr9 3934261 3934565 -138336879 + AluSg SINE Alu 1 305 -5 499 157 104 17 chr9 3934916 3935031 -138336413 - L1MC2 LINE L1 0 6344 6220 31403 108 10 59 chr9 3935211 3941660 -138329784 - L1PA7 LINE L1 -15 6139 12 1143 138 5 0 chr9 3941670 3941859 -138329585 - L1MC2 LINE L1 -108 6236 6047 6759 129 24 57 chr9 3941872 3942361 -138329083 - Tigger3b DNA MER2_type -1823 1205 701 1941 124 0 37 chr9 3942361 3942660 -138328784 + AluJb SINE Alu 1 288 -24 6759 129 24 57 chr9 3942660 3943416 -138328028 - Tigger3b DNA MER2_type -2327 701 1 1702 149 63 23 chr9 3943436 3943785 -138327659 - L1MC2 LINE L1 -339 6005 5643 2223 113 3 0 chr9 3943954 3944256 -138327188 + AluSg SINE Alu 1 303 -7 2244 98 0 7 chr9 3944602 3944899 -138326545 + AluSx SINE Alu 3 297 -15 366 345 91 0 chr9 3945503 3945668 -138325776 + MIR SINE MIR 49 228 -34 276 345 78 0 chr9 3945701 3945843 -138325601 + MIR SINE MIR 85 237 -25 770 177 0 0 chr9 3946862 3946986 -138324458 + AluSg/x SINE Alu 170 293 -19 846 237 71 0 chr9 3947511 3947709 -138323735 + MER58C DNA MER1_type 4 215 0 273 242 44 77 chr9 3948459 3948550 -138322894 + MER102b DNA MER1_type 254 341 0 4174 122 10 57 chr9 3948572 3949345 -138322099 + L1MB3 LINE L1 5440 6176 -7 193 333 0 0 chr9 3949400 3949448 -138321996 + MIR SINE MIR 49 96 -166 335 364 120 16 chr9 3949644 3950104 -138321340 - L2 LINE L2 -221 3051 2550 313 335 29 41 chr9 3950180 3950350 -138321094 + L2 LINE L2 2201 2368 -946 181 305 183 37 chr9 3950688 3950791 -138320653 + MIR SINE MIR 60 147 -115 533 247 114 6 chr9 3950791 3950949 -138320495 + MER5B DNA MER1_type 1 175 -3 181 305 183 37 chr9 3950949 3951009 -138320435 + MIR SINE MIR 147 247 -15 * 570 284 111 0 chr9 3951004 3951212 -138320232 - MIR SINE MIR 0 262 32 525 312 74 39 chr9 3953149 3953551 -138317893 - L2 LINE L2 -205 3108 2682 356 270 26 59 chr9 3953865 3954017 -138317427 + L1M4 LINE L1 3843 3989 -2157 1059 135 30 110 chr9 3954357 3954594 -138316850 - MER20 DNA MER1_type 0 219 2 1086 238 45 79 chr9 3954696 3955100 -138316344 - MLT1B LTR MaLR 0 390 1 377 328 65 14 chr9 3955239 3955809 -138315635 + L1M4 LINE L1 4151 4793 -1353 2418 67 0 3 chr9 3956020 3956320 -138315124 - AluY SINE Alu -12 299 1 336 325 33 8 chr9 3956429 3956549 -138314895 - L2 LINE L2 -703 2611 2489 3474 217 117 45 chr9 3956570 3957713 -138313731 - MER69B DNA AcHobo -1 1225 1 201 300 0 0 chr9 3957716 3957766 -138313678 - L2 LINE L2 -833 2481 2432 2689 218 65 37 chr9 3957840 3958616 -138312828 + L1MDb LINE L1 457 1389 -5020 1770 152 0 7 chr9 3958698 3958968 -138312476 + AluJb SINE Alu 1 268 -44 214 75 75 0 chr9 3959016 3959056 -138312388 + A-rich Low_complexity Low_complexity 6 48 0 2419 152 43 10 chr9 3959082 3959496 -138311948 + MSTA LTR MaLR 1 428 0 633 157 9 0 chr9 3959496 3959604 -138311840 + MSTA-int LTR MaLR 1 109 -1542 1581 156 0 8 chr9 3959604 3959848 -138311596 + MSTB LTR MaLR 185 426 0 1453 242 63 0 chr9 3959848 3960278 -138311166 + L1MDb LINE L1 1503 1959 -4447 889 189 0 0 chr9 3960281 3960434 -138311010 + FRAM SINE Alu 14 166 -10 2969 236 71 10 chr9 3960540 3961787 -138309657 + L1MDb LINE L1 2072 3379 -3027 2212 299 105 66 chr9 3961813 3963073 -138308371 + L2 LINE L2 984 2320 -994 1599 190 58 0 chr9 3963073 3963368 -138308076 + AluJb SINE Alu 1 312 0 2212 299 105 66 chr9 3963368 3963691 -138307753 + L2 LINE L2 2320 2629 -685 494 337 7 95 chr9 3964321 3964615 -138306829 + L3 LINE CR1 110 377 -1200 480 299 184 0 chr9 3964638 3964855 -138306589 - MIR SINE MIR 0 262 6 324 383 54 9 chr9 3964934 3965156 -138306288 + L3 LINE CR1 483 714 -863 2330 121 57 45 chr9 3965165 3965534 -138305910 + MSTA LTR MaLR 1 377 -51 1733 163 144 21 chr9 3965534 3965915 -138305529 + MSTA LTR MaLR 1 428 0 2330 121 57 45 chr9 3965915 3965968 -138305476 + MSTA LTR MaLR 377 428 0 187 239 137 34 chr9 3965968 3966085 -138305359 + L3 LINE CR1 724 852 -725 4858 28 11 0 chr9 3966091 3966663 -138304781 + L1PA4 LINE L1 5575 6152 -3 36 53 0 0 chr9 3967155 3967212 -138304232 + AT_rich Low_complexity Low_complexity 1 57 0 644 264 115 19 chr9 3967405 3967666 -138303778 + L3 LINE CR1 936 1221 -356 732 318 61 0 chr9 3967751 3967965 -138303479 + MIR SINE MIR 3 229 -33 2087 142 33 28 chr9 3968290 3968650 -138302794 + THE1B LTR MaLR 3 364 0 300 215 51 13 chr9 3969084 3969163 -138302281 - L1MDb LINE L1 -5440 969 888 1056 308 99 62 chr9 3969170 3969654 -138301790 - L2 LINE L2 -6 3307 2842 1678 178 45 0 chr9 3969654 3969940 -138301504 + AluJb SINE Alu 1 299 -13 1056 308 99 62 chr9 3969940 3970288 -138301156 - L2 LINE L2 -471 2842 2508 2490 63 0 0 chr9 3970288 3970587 -138300857 + AluY SINE Alu 1 299 -12 1056 308 99 62 chr9 3970587 3970958 -138300486 - L2 LINE L2 -805 2508 2058 330 302 213 0 chr9 3971189 3971358 -138300086 - L2 LINE L2 -1320 1994 1790 282 359 34 17 chr9 3971722 3971839 -138299605 - MIR3 SINE MIR -54 154 36 2459 63 7 3 chr9 3971945 3972248 -138299196 + AluY SINE Alu 1 304 -7 640 343 30 18 chr9 3972492 3972827 -138298617 + HERVL LTR ERVL 3569 3907 -1747 2037 146 21 29 chr9 3972827 3973205 -138298239 - THE1C LTR MaLR 0 375 1 1478 381 34 5 chr9 3973437 3974403 -138297041 + HERVL LTR ERVL 3962 4955 -699 613 263 120 31 chr9 3974814 3975068 -138296376 + LTR16A LTR ERVL 3 282 -175 813 196 0 0 chr9 3975070 3975213 -138296231 - FLAM_C SINE Alu 0 143 1 5211 175 90 0 chr9 3975580 3976516 -138294928 + LTR28 LTR ERV1 1 1020 0 23 33 0 0 chr9 3976531 3976561 -138294883 + AT_rich Low_complexity Low_complexity 1 30 0 507 165 31 0 chr9 3976809 3976906 -138294538 - L1M4 LINE L1 -539 5645 5546 210 91 0 0 chr9 3977377 3977410 -138294034 + (T)n Simple_repeat Simple_repeat 1 33 0 204 297 0 31 chr9 3978298 3978362 -138293082 - MER5A DNA MER1_type 0 189 128 25 0 0 0 chr9 3978392 3978417 -138293027 + AT_rich Low_complexity Low_complexity 1 25 0 258 240 8 104 chr9 3978624 3978749 -138292695 - L1MC/D LINE L1 -1921 5887 5775 390 293 24 16 chr9 3978760 3978883 -138292561 + MER5A DNA MER1_type 44 167 -22 404 316 26 52 chr9 3980164 3980319 -138291125 - MIR3 SINE MIR -48 160 10 220 238 0 32 chr9 3981041 3981104 -138290340 + (CATATA)n Simple_repeat Simple_repeat 5 65 0 326 146 12 61 chr9 3982519 3982601 -138288843 - HAL1 LINE L1 0 2507 2430 4433 97 11 32 chr9 3982692 3983354 -138288090 - MER39B LTR ERV1 -1 652 5 255 291 6 55 chr9 3983400 3983565 -138287879 - L1MC5 LINE L1 -33 7928 7772 2034 252 68 43 chr9 3983584 3983869 -138287575 - L1ME3A LINE L1 -13 6157 5881 2490 87 3 0 chr9 3983869 3984181 -138287263 - AluSp SINE Alu 0 313 1 2034 252 68 43 chr9 3984181 3985519 -138285925 - L1ME3A LINE L1 -289 5881 4484 247 316 51 17 chr9 3985743 3985920 -138285524 - HAL1 LINE L1 -1198 1309 1127 243 0 0 0 chr9 3985935 3985962 -138285482 + (TA)n Simple_repeat Simple_repeat 2 28 0 5945 115 7 3 chr9 3985962 3987308 -138284136 - L1PA15 LINE L1 -10 7574 6223 4417 201 18 10 chr9 3987310 3988333 -138283111 - L1PA15 LINE L1 -1435 6130 5100 545 202 23 55 chr9 3988315 3988533 -138282911 - HAL1 LINE L1 -1341 1166 956 * 566 137 0 0 chr9 3988538 3988640 -138282804 - L1MA8 LINE L1 -7 6284 6183 787 277 68 10 chr9 3988665 3989077 -138282367 - L1ME3A LINE L1 -1678 4468 4033 1093 159 0 23 chr9 3989081 3989257 -138282187 - AluJb SINE Alu -140 172 1 16913 148 68 5 chr9 3989257 3990662 -138280782 - L1PA15 LINE L1 -4385 3180 1865 204 40 0 0 chr9 3990662 3990687 -138280757 + (TCTCCC)n Simple_repeat Simple_repeat 1 25 0 16913 148 68 5 chr9 3990687 3992263 -138279181 - L1PA15 LINE L1 -5700 1865 11 17218 140 18 10 chr9 3992359 3995642 -138275802 - L1PA11 LINE L1 -2 7610 4286 2264 99 3 10 chr9 3995642 3995946 -138275498 - AluSg SINE Alu -8 302 1 17218 140 18 10 chr9 3995946 3996660 -138274784 - L1PA11 LINE L1 -3326 4286 3579 28613 120 11 57 chr9 3996673 4002708 -138268736 - L1PA7 LINE L1 -15 6139 426 219 36 0 0 chr9 4002708 4002736 -138268708 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 28613 120 11 57 chr9 4002736 4003133 -138268311 - L1PA7 LINE L1 -5728 426 12 4722 239 25 37 chr9 4003144 4005668 -138265776 - L1PA11 LINE L1 -3999 3585 7 827 244 41 51 chr9 4005679 4006069 -138265375 - L1M4 LINE L1 -951 5195 4810 652 256 122 48 chr9 4006072 4006639 -138264805 - L1MDb LINE L1 -5024 1194 630 362 367 66 15 chr9 4006703 4006899 -138264545 - L1MDb LINE L1 -5831 565 360 961 273 60 78 chr9 4007926 4008513 -138262931 + MER77 LTR ERV1 54 602 -3 825 217 38 79 chr9 4008521 4008901 -138262543 + MLT1A1 LTR MaLR 1 422 -6 757 179 0 0 chr9 4009483 4009606 -138261838 + FLAM_A SINE Alu 2 124 -9 519 260 8 0 chr9 4009765 4009892 -138261552 + MLT1L LTR MaLR 430 557 -58 195 129 0 0 chr9 4010142 4010173 -138261271 + (T)n Simple_repeat Simple_repeat 1 31 0 2036 98 7 11 chr9 4010176 4010453 -138260991 - AluSx SINE Alu 0 312 37 387 316 193 30 chr9 4011455 4011724 -138259720 - L3 LINE CR1 -85 1492 1180 348 316 72 24 chr9 4011816 4012189 -138259255 + L1MC4 LINE L1 7098 7488 -554 381 203 127 0 chr9 4012359 4012477 -138258967 + L1ME4a LINE L1 5977 6109 -12 250 387 34 42 chr9 4012529 4012767 -138258677 - L3 LINE CR1 -400 1177 942 502 316 17 11 chr9 4012824 4012998 -138258446 + MIR SINE MIR 87 261 -1 380 248 46 9 chr9 4013996 4014105 -138257339 - MLT1L LTR MaLR -339 276 164 2313 86 14 0 chr9 4014360 4014651 -138256793 - AluSx SINE Alu -17 295 1 270 355 118 0 chr9 4015181 4015274 -138256170 + MIR SINE MIR 31 134 -74 298 324 88 99 chr9 4015300 4015766 -138255678 - L2 LINE L2 0 3272 2812 207 162 0 0 chr9 4016308 4016345 -138255099 + CT-rich Low_complexity Low_complexity 3 39 0 1681 235 54 7 chr9 4017190 4017595 -138253849 + MER45B DNA AcHobo 1 424 -616 5242 120 24 14 chr9 4017595 4018544 -138252900 + L1MA8 LINE L1 5195 6154 -137 5793 108 13 2 chr9 4018556 4019506 -138251938 - L1PA8 LINE L1 -758 5388 4429 6002 68 2 9 chr9 4019506 4020287 -138251157 + L1PA8 LINE L1 5388 6492 -209 2304 107 0 3 chr9 4020287 4020596 -138250848 + AluSc SINE Alu 1 308 -1 6002 68 2 9 chr9 4020596 4020805 -138250639 + L1PA8 LINE L1 6492 6701 0 2689 164 91 2 chr9 4020813 4021360 -138250084 + MER45B DNA AcHobo 411 1006 -34 1045 45 8 0 chr9 4021437 4021569 -138249875 - L1PA7 LINE L1 -4 6150 6018 384 109 0 0 chr9 4021569 4021624 -138249820 + MER45B DNA AcHobo 984 1038 -2 1687 178 16 3 chr9 4021774 4022134 -138249310 + L1PB4 LINE L1 5812 6175 0 184 234 0 64 chr9 4022275 4022322 -138249122 + L2 LINE L2 3213 3256 -16 871 269 98 52 chr9 4022633 4023094 -138248350 - MLT1J LTR MaLR -8 503 22 2097 120 3 3 chr9 4023338 4023639 -138247805 - AluSx SINE Alu -6 306 6 376 330 28 0 chr9 4023753 4023862 -138247582 - MER5A DNA MER1_type -10 179 68 342 0 0 0 chr9 4025938 4025976 -138245468 + (TA)n Simple_repeat Simple_repeat 2 39 0 225 277 0 0 chr9 4027564 4027629 -138243815 + MLT1K LTR MaLR 519 583 -5 183 309 79 63 chr9 4027780 4027906 -138243538 - MIR SINE MIR 0 262 135 256 282 70 0 chr9 4028272 4028343 -138243101 - MIR SINE MIR -79 129 54 696 225 22 0 chr9 4028389 4028527 -138242917 - MER5A DNA MER1_type -29 160 20 24 32 0 0 chr9 4029375 4029406 -138242038 + AT_rich Low_complexity Low_complexity 1 31 0 1585 150 132 6 chr9 4029739 4030072 -138241372 + THE1C LTR MaLR 1 375 0 200 343 159 17 chr9 4030381 4030553 -138240891 - MIR3 SINE MIR -64 198 4 12765 180 40 47 chr9 4030571 4032464 -138238980 - L1MA4A LINE L1 0 7365 5460 180 0 0 0 chr9 4032464 4032484 -138238960 + (TTTTA)n Simple_repeat Simple_repeat 3 22 0 12765 180 40 47 chr9 4032484 4035152 -138236292 - L1MA4A LINE L1 -1905 5460 2646 1319 102 11 0 chr9 4035152 4035329 -138236115 - AluSp SINE Alu -3 310 132 12765 180 40 47 chr9 4035329 4037251 -138234193 - L1MA4A LINE L1 -4719 2646 712 1840 274 72 31 chr9 4037640 4038349 -138233095 - L1MA4A LINE L1 -6471 738 1 182 340 0 0 chr9 4038628 4038681 -138232763 - L2 LINE L2 0 3313 3261 301 200 60 184 chr9 4038724 4038909 -138232535 - MER5B DNA MER1_type 0 178 17 341 0 0 43 chr9 4039126 4039172 -138232272 + (CATTA)n Simple_repeat Simple_repeat 4 47 0 213 154 0 0 chr9 4039193 4039232 -138232212 + (TG)n Simple_repeat Simple_repeat 1 39 0 260 269 0 0 chr9 4039384 4039436 -138232008 - MIR3 SINE MIR -34 174 123 231 167 0 0 chr9 4040029 4040071 -138231373 + (CTG)n Simple_repeat Simple_repeat 1 42 0 477 300 170 0 chr9 4040418 4040618 -138230826 + MIR SINE MIR 29 262 0 416 244 64 32 chr9 4041079 4041235 -138230209 - MLT1J LTR MaLR -23 488 328 2239 109 7 7 chr9 4041642 4041946 -138229498 - AluSc SINE Alu -5 304 1 31 26 0 0 chr9 4041979 4042017 -138229427 + AT_rich Low_complexity Low_complexity 1 38 0 250 316 0 0 chr9 4042107 4042183 -138229261 + L1ME LINE L1 176 251 -5954 517 330 100 45 chr9 4042479 4043058 -138228386 + L1ME LINE L1 567 1177 -5028 489 304 35 3 chr9 4043084 4043373 -138228071 + L1ME LINE L1 1259 1556 -4840 207 0 0 0 chr9 4043407 4043430 -138228014 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 1639 268 151 20 chr9 4043515 4045012 -138226432 + L1ME LINE L1 2169 3825 -2390 303 259 259 26 chr9 4045060 4045249 -138226195 + L1ME LINE L1 3998 4230 -1985 1796 107 40 10 chr9 4045250 4045549 -138225895 + L1PB2 LINE L1 5722 6037 -114 728 280 83 34 chr9 4045547 4046101 -138225343 + L1ME LINE L1 4569 5149 -1066 * 349 299 75 7 chr9 4047127 4047274 -138224170 + MIR SINE MIR 105 261 -1 1946 97 19 58 chr9 4047410 4047573 -138223871 - AluSg1 SINE Alu -9 300 132 239 0 0 31 chr9 4047573 4047605 -138223839 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 1946 97 19 58 chr9 4047605 4047621 -138223823 - AluSg1 SINE Alu -177 132 117 2604 33 0 0 chr9 4047621 4047925 -138223519 - AluYb8 SINE Alu -14 304 1 1946 97 19 58 chr9 4047925 4048055 -138223389 - AluSg1 SINE Alu -192 117 2 749 210 26 65 chr9 4048418 4048647 -138222797 + MER112 DNA MER1_type 1 220 -40 279 233 106 100 chr9 4049086 4049247 -138222197 - MIR SINE MIR -57 205 45 186 43 0 0 chr9 4049389 4049412 -138222032 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1560 200 82 43 chr9 4051405 4051891 -138219553 - MLT1D LTR MaLR 0 505 1 465 250 22 71 chr9 4051983 4052167 -138219277 - MER5B DNA MER1_type -3 175 1 273 198 0 0 chr9 4054564 4054645 -138216799 + (CA)n Simple_repeat Simple_repeat 1 81 0 260 286 58 39 chr9 4054967 4055173 -138216271 + LTR16B LTR ERVL 4 213 -251 497 246 128 45 chr9 4057119 4057517 -138213927 - L1ME4a LINE L1 -4 6117 5687 1594 278 154 88 chr9 4058750 4059799 -138211645 - L2 LINE L2 0 3313 2334 204 40 0 0 chr9 4059799 4059824 -138211620 + (GGAGA)n Simple_repeat Simple_repeat 2 26 0 1594 278 154 88 chr9 4059824 4059961 -138211483 - L2 LINE L2 -979 2334 2207 553 234 16 0 chr9 4059961 4060085 -138211359 + MER94 DNA DNA 9 134 0 1594 278 154 88 chr9 4060085 4060516 -138210928 - L2 LINE L2 -1106 2207 1442 251 281 157 0 chr9 4060924 4061010 -138210434 + MIR SINE MIR 55 149 -59 2214 120 0 0 chr9 4061959 4062258 -138209186 - AluSx SINE Alu -13 299 1 295 337 61 0 chr9 4063418 4063516 -138207928 - L2 LINE L2 0 3272 3169 21 0 0 0 chr9 4063516 4063537 -138207907 + AT_rich Low_complexity Low_complexity 1 21 0 2745 74 21 5 chr9 4063537 4063915 -138207529 - L1PA10 LINE L1 0 6168 5785 215 271 0 0 chr9 4064125 4064184 -138207260 - L2 LINE L2 -298 2974 2916 2359 98 0 0 chr9 4064202 4064497 -138206947 + AluSg SINE Alu 1 295 -15 32 26 0 0 chr9 4064536 4064575 -138206869 + AT_rich Low_complexity Low_complexity 1 39 0 1056 183 18 22 chr9 4064699 4064928 -138206516 + MER96B DNA MER1_type? 190 417 0 208 167 0 0 chr9 4065382 4065418 -138206026 + L2 LINE L2 3273 3308 -5 2259 116 0 3 chr9 4066691 4067001 -138204443 - AluSx SINE Alu -3 309 1 2306 99 0 10 chr9 4067366 4067670 -138203774 - AluSq SINE Alu -12 301 1 2701 194 98 17 chr9 4068353 4068395 -138203049 + MER63C DNA MER1_type 11 48 -1012 267 31 0 0 chr9 4068395 4068427 -138203017 + (CA)n Simple_repeat Simple_repeat 2 33 0 2701 194 98 17 chr9 4068427 4069137 -138202307 + MER63C DNA MER1_type 48 824 -106 938 201 6 0 chr9 4069137 4069301 -138202143 - FRAM SINE Alu -7 169 5 415 234 21 0 chr9 4069305 4069399 -138202045 + MER63C DNA MER1_type 817 912 -18 297 279 77 93 chr9 4069460 4069707 -138201737 + MLT1J LTR MaLR 1 243 -268 382 182 130 71 chr9 4069753 4069907 -138201537 - MLT1J2 LTR MaLR -22 428 266 863 200 12 0 chr9 4070070 4070240 -138201204 - Tigger1 DNA MER2_type -2246 172 1 1327 190 0 4 chr9 4070337 4070563 -138200881 + AluJo SINE Alu 84 308 -4 1606 159 36 47 chr9 4071354 4071655 -138199789 + AluJb SINE Alu 1 298 -14 2405 80 7 0 chr9 4071839 4072140 -138199304 - AluSq SINE Alu -10 303 1 245 259 0 0 chr9 4072710 4072764 -138198680 + (TG)n Simple_repeat Simple_repeat 2 55 0 879 201 6 22 chr9 4072764 4072791 -138198653 - MER45A DNA AcHobo -1404 177 151 7613 27 0 0 chr9 4072791 4074186 -138197258 + L1PA4 LINE L1 4757 6152 -3 879 201 6 22 chr9 4074186 4074337 -138197107 - MER45A DNA AcHobo -1430 151 2 344 306 27 55 chr9 4074524 4074707 -138196737 + MIR SINE MIR 56 233 -29 21 36 0 0 chr9 4075552 4075580 -138195864 + AT_rich Low_complexity Low_complexity 1 28 0 407 316 21 16 chr9 4076937 4077124 -138194320 + MER117 DNA MER1_type 10 197 0 221 277 121 48 chr9 4077274 4077440 -138194004 - MIR SINE MIR 0 262 85 284 102 20 0 chr9 4080527 4080576 -138190868 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 998 216 50 0 chr9 4081073 4081295 -138190149 - MIR SINE MIR -8 254 22 185 387 40 0 chr9 4081334 4081409 -138190035 - L3 LINE CR1 -92 1485 1408 685 269 97 36 chr9 4081508 4081898 -138189546 - LTR16C LTR ERVL -18 473 60 980 175 6 0 chr9 4082033 4082199 -138189245 + MER5A DNA MER1_type 1 167 -22 567 275 86 57 chr9 4082389 4082796 -138188648 - MLT1J LTR MaLR -23 488 70 2357 93 0 0 chr9 4084082 4084383 -138187061 + AluY SINE Alu 1 301 -10 735 272 68 36 chr9 4084852 4085102 -138186342 + MIR SINE MIR 4 261 -1 275 292 358 0 chr9 4085277 4085414 -138186030 - MER5A DNA MER1_type 0 189 4 291 306 150 25 chr9 4085427 4085587 -138185857 + MIR SINE MIR 53 232 -30 1807 127 33 7 chr9 4085682 4086019 -138185425 + AluSx SINE Alu 1 344 0 1150 224 37 104 chr9 4086268 4086644 -138184800 + L1MEc LINE L1 36 373 -6023 2185 92 3 10 chr9 4086644 4086948 -138184496 + AluSx SINE Alu 1 302 -10 1150 224 37 104 chr9 4086948 4087061 -138184383 + L1MEc LINE L1 373 492 -5904 910 228 0 0 chr9 4087062 4087220 -138184224 + FRAM SINE Alu 1 157 -19 1920 216 145 8 chr9 4087252 4087899 -138183545 + L1MEc LINE L1 518 1253 -5143 1459 216 62 55 chr9 4087900 4087979 -138183465 + L1MEc LINE L1 1759 1836 -4560 1869 176 3 6 chr9 4087979 4088292 -138183152 - AluJb SINE Alu 0 312 1 1459 216 62 55 chr9 4088292 4088444 -138183000 + L1MEc LINE L1 1836 1985 -4411 1884 185 0 6 chr9 4088444 4088758 -138182686 - AluJo SINE Alu 0 312 1 1459 216 62 55 chr9 4088758 4089090 -138182354 + L1MEc LINE L1 1985 2327 -4069 * 3397 231 57 65 chr9 4089088 4090436 -138181008 + L1MEc LINE L1 2966 4297 -1918 1657 105 24 0 chr9 4090436 4090684 -138180760 + L1PA10 LINE L1 5915 6168 0 3397 231 57 65 chr9 4090684 4091048 -138180396 + L1MEc LINE L1 4297 4663 -1552 18766 157 46 25 chr9 4091054 4097904 -138173540 + L1M1 LINE L1 18 7008 -713 288 0 0 0 chr9 4098199 4098231 -138173213 + (A)n Simple_repeat Simple_repeat 1 32 0 1438 243 130 18 chr9 4098611 4099258 -138172186 + L2 LINE L2 2565 3311 -2 214 167 0 0 chr9 4099738 4099774 -138171670 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 31 58 0 0 chr9 4099937 4099989 -138171455 + AT_rich Low_complexity Low_complexity 1 52 0 643 277 116 55 chr9 4100085 4100811 -138170633 - L1MC4 LINE L1 -143 7899 7130 351 44 0 0 chr9 4100813 4100858 -138170586 + (TG)n Simple_repeat Simple_repeat 2 46 0 878 248 28 88 chr9 4101007 4101249 -138170195 - L1MC4 LINE L1 -981 7061 6849 2179 118 7 0 chr9 4101249 4101538 -138169906 - AluSx SINE Alu -21 291 1 878 248 28 88 chr9 4101538 4101682 -138169762 - L1MC4 LINE L1 -1193 6849 6698 206 229 147 83 chr9 4101922 4102031 -138169413 - MIR SINE MIR -70 138 23 5332 156 14 6 chr9 4102106 4103801 -138167643 + L1PA15 LINE L1 4309 6164 -1 963 177 23 0 chr9 4103938 4104113 -138167331 + MER5A DNA MER1_type 8 186 -3 227 313 31 0 chr9 4104564 4104628 -138166816 + MIR SINE MIR 119 184 -78 310 344 81 12 chr9 4105153 4105400 -138166044 + L2 LINE L2 2199 2462 -852 319 220 11 33 chr9 4105591 4105682 -138165762 - MIR SINE MIR -1 261 173 217 345 116 34 chr9 4105646 4105998 -138165446 + L2 LINE L2 2672 3059 -213 * 383 354 186 11 chr9 4106251 4106632 -138164812 - L2 LINE L2 0 3272 2825 1866 164 7 0 chr9 4106977 4107287 -138164157 + AluSx SINE Alu 1 312 0 3022 179 59 14 chr9 4107397 4108045 -138163399 + L1MB5 LINE L1 5492 6168 -6 6344 61 2 24 chr9 4108130 4109522 -138161922 + L1PA7 LINE L1 4774 6134 -20 285 29 0 0 chr9 4109522 4109556 -138161888 + (TG)n Simple_repeat Simple_repeat 2 35 0 366 325 43 11 chr9 4109564 4109752 -138161692 + L1M4 LINE L1 4260 4453 -1693 23 33 0 0 chr9 4110164 4110194 -138161250 + AT_rich Low_complexity Low_complexity 1 30 0 1384 74 0 23 chr9 4110217 4110393 -138161051 + AluY SINE Alu 1 172 -139 22 35 0 0 chr9 4111079 4111108 -138160336 + AT_rich Low_complexity Low_complexity 1 29 0 2570 49 0 0 chr9 4112009 4112315 -138159129 - AluY SINE Alu -5 306 1 306 206 31 19 chr9 4112390 4112488 -138158956 - L1ME LINE L1 -355 5766 5668 2469 62 0 13 chr9 4112488 4112793 -138158651 - AluY SINE Alu -10 301 1 306 206 31 19 chr9 4112793 4112826 -138158618 - L1ME LINE L1 -453 5668 5637 2474 55 3 3 chr9 4112976 4113286 -138158158 - AluY SINE Alu -1 310 1 446 194 21 11 chr9 4113542 4113635 -138157809 + MER20 DNA MER1_type 1 94 -125 447 123 14 0 chr9 4114448 4114521 -138156923 + AluS SINE Alu 1 74 -239 2233 66 3 35 chr9 4114660 4114978 -138156466 + AluY SINE Alu 1 308 -3 4008 191 52 27 chr9 4114992 4116623 -138154821 - L1MB2 LINE L1 -18 6153 4565 208 69 0 0 chr9 4116630 4116659 -138154785 + (TTTTG)n Simple_repeat Simple_repeat 4 80 0 2032 127 0 10 chr9 4116659 4116942 -138154502 - AluJb SINE Alu -6 306 1 4008 191 52 27 chr9 4116942 4117316 -138154128 - L1MB2 LINE L1 -1606 4565 4104 2373 55 3 35 chr9 4117316 4117626 -138153818 + AluY SINE Alu 1 300 -11 4008 191 52 27 chr9 4117626 4117656 -138153788 - L1MB2 LINE L1 -2067 4104 4076 35931 55 7 2 chr9 4117665 4123279 -138148165 - L1PA5 LINE L1 0 6154 511 347 62 31 31 chr9 4123381 4123445 -138147999 + Alu SINE Alu 237 300 -1 4130 207 127 36 chr9 4123459 4124160 -138147284 + L1MCb LINE L1 636 1272 -5292 2520 46 0 7 chr9 4124160 4124464 -138146980 - AluY SINE Alu -9 302 1 4130 207 127 36 chr9 4124464 4125525 -138145919 + L1MCb LINE L1 1272 2236 -4328 7265 47 5 0 chr9 4125525 4126586 -138144858 + L1PA5 LINE L1 5094 6151 -3 4130 207 127 36 chr9 4126586 4127361 -138144083 + L1MCb LINE L1 2236 3351 -3213 1239 246 47 0 chr9 4127369 4127756 -138143688 + L1MCb LINE L1 3908 4312 -2252 334 131 0 0 chr9 4127762 4127823 -138143621 + L1MC2 LINE L1 6274 6334 -10 2497 244 29 33 chr9 4127828 4128826 -138142618 + L1M4 LINE L1 2490 3483 -2663 1659 160 19 0 chr9 4129049 4129318 -138142126 - AluSx SINE Alu -38 274 1 313 343 56 9 chr9 4129977 4130085 -138141359 - MIR3 SINE MIR -93 115 3 1498 196 31 10 chr9 4130332 4130623 -138140821 - AluJo SINE Alu -15 297 1 360 298 158 35 chr9 4131161 4131332 -138140112 + MIR3 SINE MIR 3 194 -14 1691 195 36 28 chr9 4131555 4131944 -138139500 - MSTD LTR MaLR -4 392 1 4248 127 46 29 chr9 4133709 4135062 -138136382 + pTR5 LTR ERV1 738 2438 0 364 267 59 0 chr9 4135203 4135304 -138136140 - MIR3 SINE MIR -15 193 87 2343 87 23 0 chr9 4135644 4135944 -138135500 - AluSq SINE Alu -6 307 1 243 88 0 0 chr9 4136572 4136606 -138134838 + (TG)n Simple_repeat Simple_repeat 2 35 0 617 309 168 23 chr9 4136964 4137362 -138134082 + L3 LINE CR1 1101 1556 -21 780 286 61 12 chr9 4137648 4138087 -138133357 - MLT1J LTR MaLR -23 488 7 22 35 0 0 chr9 4138262 4138291 -138133153 + AT_rich Low_complexity Low_complexity 1 29 0 282 338 135 24 chr9 4139007 4139214 -138132230 - MIR SINE MIR -16 246 17 246 183 9 148 chr9 4139398 4139454 -138131990 - MLT1L LTR MaLR -6 609 575 1147 170 5 0 chr9 4139454 4139642 -138131802 + MER5A DNA MER1_type 1 189 0 246 183 9 148 chr9 4139642 4139700 -138131744 - MLT1L LTR MaLR -40 575 511 591 269 36 5 chr9 4139816 4140009 -138131435 - MLT1L LTR MaLR -289 326 128 369 308 38 8 chr9 4141111 4141244 -138130200 + MIR3 SINE MIR 49 185 -23 542 254 37 0 chr9 4141301 4141435 -138130009 + MIR SINE MIR 47 185 -77 618 193 107 0 chr9 4141693 4141843 -138129601 - MER5A DNA MER1_type -10 179 14 402 299 21 35 chr9 4141855 4141999 -138129445 - MER5A DNA MER1_type -28 161 20 281 237 0 118 chr9 4142511 4142604 -138128840 - MIR SINE MIR 0 262 181 1498 139 12 8 chr9 4142848 4143092 -138128352 + THE1B LTR MaLR 120 364 0 1045 266 39 53 chr9 4143121 4143535 -138127909 + MER20B DNA MER1_type 100 507 -276 296 279 0 0 chr9 4143547 4143626 -138127818 + (TA)n Simple_repeat Simple_repeat 2 80 0 886 246 14 7 chr9 4143699 4143975 -138127469 + MER20B DNA MER1_type 505 782 -1 325 350 72 6 chr9 4144544 4144724 -138126720 - MIR SINE MIR -50 212 21 613 265 180 17 chr9 4144988 4145410 -138126034 + MLT1H1 LTR MaLR 32 522 -33 189 0 0 0 chr9 4145775 4145796 -138125648 + (TTAA)n Simple_repeat Simple_repeat 4 24 0 714 142 0 0 chr9 4145799 4145905 -138125539 - AluSx SINE Alu -23 289 184 1347 99 5 36 chr9 4145985 4146177 -138125267 - AluSx SINE Alu -126 186 1 359 291 56 56 chr9 4147804 4148055 -138123389 + L2 LINE L2 2271 2521 -793 1871 146 17 0 chr9 4148479 4148781 -138122663 + AluSx SINE Alu 1 307 -5 693 199 8 0 chr9 4148906 4149037 -138122407 - FLAM_A SINE Alu -1 132 1 203 393 10 81 chr9 4149046 4149354 -138122090 + L2 LINE L2 2901 3186 -86 1028 271 80 18 chr9 4149427 4149826 -138121618 + L1ME3 LINE L1 5486 5909 -261 2179 78 25 6 chr9 4149851 4150173 -138121271 + LTR7 LTR ERV1 121 448 -2 268 237 25 51 chr9 4150281 4150399 -138121045 + L1ME3 LINE L1 5967 6081 -81 1716 152 35 7 chr9 4150433 4150716 -138120728 - AluJb SINE Alu -21 291 1 249 108 0 0 chr9 4150794 4150831 -138120613 + (GA)n Simple_repeat Simple_repeat 2 38 0 540 101 13 0 chr9 4152179 4152258 -138119186 + MADE1 DNA Mariner 1 80 0 341 161 70 119 chr9 4152338 4152481 -138118963 - L1ME4a LINE L1 -11 6110 5975 2188 132 3 0 chr9 4153911 4154222 -138117222 - AluSx SINE Alu 0 312 1 26 0 0 0 chr9 4154222 4154248 -138117196 + AT_rich Low_complexity Low_complexity 1 26 0 21 71 0 0 chr9 4154910 4154952 -138116492 + AT_rich Low_complexity Low_complexity 1 42 0 2250 77 3 46 chr9 4155482 4155807 -138115637 - AluY SINE Alu 0 311 1 1545 176 137 56 chr9 4156197 4156664 -138114780 - MLT1D LTR MaLR 0 505 1 212 263 0 0 chr9 4157021 4157078 -138114366 + (CATA)n Simple_repeat Simple_repeat 4 60 0 504 289 19 120 chr9 4157106 4157212 -138114232 - L2 LINE L2 -199 3114 2999 2254 125 0 0 chr9 4157212 4157515 -138113929 + AluSx SINE Alu 1 303 -9 504 289 19 120 chr9 4157515 4157674 -138113770 - L2 LINE L2 -314 2999 2876 710 245 54 113 chr9 4157761 4158337 -138113107 + MER34 LTR ERV1 1 542 0 240 287 298 0 chr9 4158423 4158517 -138112927 - MIR SINE MIR -115 147 26 336 194 87 0 chr9 4158863 4158966 -138112478 + MER104 DNA Tc2 6 117 -63 1904 114 13 40 chr9 4161196 4161494 -138109950 + AluSx SINE Alu 1 290 -22 273 171 105 57 chr9 4162598 4162703 -138108741 + LTR41 LTR ERVL 5 114 -659 2821 168 42 32 chr9 4162760 4163375 -138108069 - L1MB7 LINE L1 -42 6142 5522 651 249 37 11 chr9 4163376 4163565 -138107879 - MLT1A2 LTR MaLR 0 374 181 1538 289 53 80 chr9 4163581 4164595 -138106849 - L1M4 LINE L1 -1299 4847 3807 270 0 0 0 chr9 4164595 4164625 -138106819 + (TTA)n Simple_repeat Simple_repeat 3 32 0 1984 122 3 14 chr9 4164632 4164920 -138106524 - AluSc SINE Alu -24 285 1 1538 289 53 80 chr9 4164920 4165583 -138105861 - L1M4 LINE L1 -2345 3801 3209 567 190 50 50 chr9 4165621 4165800 -138105644 + LTR41 LTR ERVL 585 763 -10 323 344 21 91 chr9 4165831 4166261 -138105183 + L2 LINE L2 2533 2932 -382 849 313 56 36 chr9 4166786 4167287 -138104157 - LTR33 LTR ERVL -8 513 3 22 35 0 0 chr9 4167331 4167360 -138104084 + AT_rich Low_complexity Low_complexity 1 29 0 331 213 0 0 chr9 4168080 4168141 -138103303 - L2 LINE L2 -1 3271 3211 316 328 50 0 chr9 4168472 4168591 -138102853 - MIR SINE MIR -108 154 30 192 186 0 47 chr9 4168814 4168857 -138102587 + L2 LINE L2 3229 3269 -3 977 220 113 50 chr9 4169726 4170090 -138101354 + LTR33A LTR ERVL 137 523 0 788 283 75 24 chr9 4170473 4170766 -138100678 - MLT1K LTR MaLR -4 584 277 405 399 0 0 chr9 4170944 4171082 -138100362 + MIR3 SINE MIR 19 156 -52 180 262 0 0 chr9 4171262 4171304 -138100140 + MIR3 SINE MIR 150 191 -17 202 264 43 71 chr9 4172254 4172394 -138099050 - L2 LINE L2 -188 3084 2949 1193 288 48 32 chr9 4172508 4173276 -138098168 + L2 LINE L2 2522 3306 -7 851 244 11 0 chr9 4174872 4175048 -138096396 - MER5A DNA MER1_type -5 184 7 599 250 62 82 chr9 4175289 4175533 -138095911 - MLT1K LTR MaLR -2 586 348 332 371 16 8 chr9 4178020 4178144 -138093300 - MIR SINE MIR -63 145 21 573 197 28 35 chr9 4179382 4179524 -138091920 + MER5B DNA MER1_type 35 175 -3 403 292 78 31 chr9 4179525 4179711 -138091733 + MIR SINE MIR 35 227 -35 1655 149 8 4 chr9 4180001 4180263 -138091181 + AluSx SINE Alu 32 294 -18 22 35 0 0 chr9 4180264 4180293 -138091151 + AT_rich Low_complexity Low_complexity 1 29 0 311 164 0 0 chr9 4180356 4180411 -138091033 - Alu SINE Alu -1 300 246 222 226 24 51 chr9 4180486 4180785 -138090659 + CT-rich Low_complexity Low_complexity 1 290 0 2918 6 0 0 chr9 4180946 4181257 -138090187 + AluY SINE Alu 1 311 0 245 326 57 17 chr9 4181273 4181448 -138089996 - MLT1J LTR MaLR 0 511 330 802 296 93 51 chr9 4181766 4182273 -138089171 - LTR67 LTR ERVL 0 557 30 242 139 0 0 chr9 4182347 4182383 -138089061 - MIR SINE MIR -62 146 111 434 280 70 33 chr9 4182390 4182661 -138088783 + L1MC4a LINE L1 5629 5909 -1899 1708 130 7 29 chr9 4182784 4183061 -138088383 + Tigger5 DNA MER2_type 2052 2322 -1 309 51 0 0 chr9 4183072 4183111 -138088333 + (CA)n Simple_repeat Simple_repeat 2 40 0 279 200 104 32 chr9 4183121 4183246 -138088198 + L1ME4a LINE L1 5985 6118 -3 201 191 0 24 chr9 4184655 4184697 -138086747 + T-rich Low_complexity Low_complexity 2 42 0 699 250 101 48 chr9 4184839 4185087 -138086357 + MIR SINE MIR 2 262 0 180 183 14 42 chr9 4185794 4185805 -138085639 + CT-rich Low_complexity Low_complexity 4 14 -58 1259 225 78 52 chr9 4185805 4186191 -138085253 - MSTD LTR MaLR 0 396 1 180 183 14 42 chr9 4186191 4186250 -138085194 + CT-rich Low_complexity Low_complexity 14 72 0 596 132 9 0 chr9 4186340 4186446 -138084998 + C-rich Low_complexity Low_complexity 5 111 0 2604 86 44 17 chr9 4186886 4187248 -138084196 - THE1C LTR MaLR 0 375 4 10152 98 46 47 chr9 4187251 4188521 -138082923 - THE1C-int LTR MaLR 0 1580 310 2357 127 48 20 chr9 4188521 4188875 -138082569 + THE1B LTR MaLR 1 364 0 12584 93 4 0 chr9 4188875 4190449 -138080995 + THE1B-int LTR MaLR 1 1580 0 2203 145 54 20 chr9 4190449 4190801 -138080643 + THE1B LTR MaLR 1 364 0 10152 98 46 47 chr9 4190801 4191110 -138080334 - THE1C-int LTR MaLR -1267 313 1 2944 96 5 16 chr9 4191112 4191489 -138079955 - THE1C LTR MaLR -2 373 1 266 197 28 155 chr9 4191892 4192034 -138079410 + LTR67 LTR ERVL 434 557 0 2803 136 13 75 chr9 4192968 4193491 -138077953 + L1MB3 LINE L1 5693 6183 0 415 276 104 8 chr9 4193788 4193922 -138077522 - MIR SINE MIR -65 197 51 257 366 67 8 chr9 4195243 4195377 -138076067 + MIR3 SINE MIR 19 160 -48 182 37 37 0 chr9 4196838 4196865 -138074579 + (CAATT)n Simple_repeat Simple_repeat 1 28 0 368 243 54 45 chr9 4196872 4196983 -138074461 - L2 LINE L2 -22 3250 3139 686 184 171 13 chr9 4197754 4197912 -138073532 + MER5A DNA MER1_type 7 189 0 184 195 0 24 chr9 4197912 4197951 -138073493 - MIR SINE MIR -64 198 161 213 277 0 0 chr9 4198182 4198229 -138073215 + (CACG)n Simple_repeat Simple_repeat 1 47 0 183 129 0 0 chr9 4198669 4198700 -138072744 + (TTCA)n Simple_repeat Simple_repeat 2 32 0 183 200 60 60 chr9 4198776 4198826 -138072618 + L2 LINE L2 3222 3271 -1 1257 278 75 63 chr9 4199843 4199986 -138071458 - L1ME3A LINE L1 -144 6262 6122 2020 152 66 23 chr9 4199986 4200335 -138071109 + MER47A DNA MER2_type 2 365 -1 1257 278 75 63 chr9 4200335 4200467 -138070977 - L1ME3A LINE L1 -284 6122 5993 16839 146 35 8 chr9 4200467 4200824 -138070620 + Tigger4(Zombi) DNA MER2_type 1 347 -2384 195 100 0 0 chr9 4200824 4200854 -138070590 + (TTG)n Simple_repeat Simple_repeat 1 30 0 16839 146 35 8 chr9 4200854 4203157 -138068287 + Tigger4(Zombi) DNA MER2_type 347 2731 0 1257 278 75 63 chr9 4203157 4203412 -138068032 - L1ME3A LINE L1 -413 5993 5743 1354 156 138 86 chr9 4203412 4203600 -138067844 - MER2 DNA MER2_type 0 344 129 1691 133 94 0 chr9 4203600 4203877 -138067567 + AluSx SINE Alu 5 305 0 1354 156 138 86 chr9 4203877 4204014 -138067430 - MER2 DNA MER2_type -215 129 1 1257 278 75 63 chr9 4204014 4205320 -138066124 - L1ME3A LINE L1 -663 5743 4402 26 21 0 42 chr9 4205496 4205511 -138065933 + AT_rich Low_complexity Low_complexity 1 15 -31 2524 38 0 0 chr9 4205511 4205801 -138065643 - AluY SINE Alu -21 290 1 26 21 0 42 chr9 4205801 4205833 -138065611 + AT_rich Low_complexity Low_complexity 15 46 0 552 267 74 20 chr9 4205997 4206199 -138065245 + MLT1I LTR MaLR 3 215 -194 518 258 60 56 chr9 4206339 4206914 -138064530 - L1ME3A LINE L1 -3518 2864 2287 344 290 44 47 chr9 4206900 4207497 -138063947 - HAL1b LINE L1 -885 1165 1077 * 236 286 60 23 chr9 4208364 4208497 -138062947 - L1M4 LINE L1 -1978 4168 4031 1227 42 56 0 chr9 4208803 4208947 -138062497 - L1PA8 LINE L1 -14 6158 6007 290 276 81 0 chr9 4210571 4210658 -138060786 - MIR SINE MIR -77 185 92 188 348 73 39 chr9 4211026 4211204 -138060240 + MIR3 SINE MIR 15 198 -10 2861 72 119 5 chr9 4211212 4211614 -138059830 - LTR7 LTR ERV1 -2 448 1 2254 107 62 16 chr9 4211614 4211987 -138059457 - HERVH LTR ERV1 0 7713 7324 1390 134 19 0 chr9 4211987 4212203 -138059241 - HERVH LTR ERV1 -1894 5819 5600 3808 145 2 2 chr9 4212207 4212779 -138058665 - HERVH LTR ERV1 -2567 5146 4575 1334 104 0 0 chr9 4212776 4212959 -138058485 - HERVH LTR ERV1 -3043 4670 4488 * 6451 69 2 2 chr9 4212961 4213815 -138057629 - HERVH LTR ERV1 -3720 3993 3140 * 16169 93 21 24 chr9 4213801 4216676 -138054768 - HERVH LTR ERV1 -4721 2992 1 2638 73 128 5 chr9 4216678 4217077 -138054367 - LTR7 LTR ERV1 -2 448 1 2491 248 65 44 chr9 4217714 4218391 -138053053 - MER115 DNA AcHobo 0 693 3 213 39 0 0 chr9 4218897 4218923 -138052521 + (CA)n Simple_repeat Simple_repeat 2 27 0 360 0 0 0 chr9 4218995 4219035 -138052409 + (TG)n Simple_repeat Simple_repeat 1 40 0 401 306 91 39 chr9 4219348 4219580 -138051864 + LTR16A LTR ERVL 201 444 -6 310 184 0 105 chr9 4219671 4219747 -138051697 + L2 LINE L2 3246 3313 0 2435 162 77 46 chr9 4220264 4220852 -138050592 - L1MB4 LINE L1 -6 6174 5569 528 239 34 0 chr9 4220913 4221030 -138050414 - MER103 DNA DNA -44 122 2 295 239 27 133 chr9 4221205 4221393 -138050051 + L2 LINE L2 2917 3084 -188 371 266 40 102 chr9 4221473 4221650 -138049794 - MER5A DNA MER1_type -12 177 12 203 170 21 0 chr9 4221717 4221764 -138049680 + (TGAA)n Simple_repeat Simple_repeat 1 48 0 185 234 0 0 chr9 4221768 4221815 -138049629 + MIR3 SINE MIR 121 167 -41 1545 176 54 57 chr9 4222782 4223118 -138048326 + MER58B DNA MER1_type 6 340 -1 1035 254 86 84 chr9 4223193 4223751 -138047693 - L1ME3A LINE L1 -75 6095 5537 234 0 0 0 chr9 4223922 4223948 -138047496 + (A)n Simple_repeat Simple_repeat 1 26 0 201 39 0 0 chr9 4224698 4224724 -138046720 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 21 0 0 0 chr9 4225232 4225253 -138046191 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 4225625 4225647 -138045797 + AT_rich Low_complexity Low_complexity 1 22 0 367 353 85 34 chr9 4229054 4229465 -138041979 - L2 LINE L2 -338 2976 2545 318 294 105 14 chr9 4230751 4230894 -138040550 + MIR SINE MIR 107 262 0 803 327 55 35 chr9 4231604 4232200 -138039244 + L1ME4a LINE L1 5309 5916 -205 847 192 66 6 chr9 4232301 4232483 -138038961 + MIR SINE MIR 7 199 -63 48 77 0 0 chr9 4232487 4232591 -138038853 + AT_rich Low_complexity Low_complexity 1 104 0 1135 168 73 0 chr9 4234657 4234848 -138036596 + MER3 DNA MER1_type 5 209 0 272 302 16 48 chr9 4235944 4236070 -138035374 + MIR SINE MIR 135 256 -6 376 301 62 0 chr9 4236140 4236253 -138035191 - L2 LINE L2 -34 3279 3160 5001 150 53 15 chr9 4237548 4238395 -138033049 + L1MC1 LINE L1 5449 6327 -6 618 278 0 13 chr9 4238408 4238559 -138032885 + L2 LINE L2 3165 3313 0 343 309 82 31 chr9 4239784 4239978 -138031466 - MIR SINE MIR -6 256 53 194 343 187 6 chr9 4240316 4240482 -138030962 + MIR SINE MIR 49 244 -18 375 245 68 54 chr9 4241633 4241780 -138029664 + MIR SINE MIR 6 154 -108 2042 130 0 0 chr9 4242503 4242788 -138028656 + AluSg SINE Alu 1 285 -25 223 265 163 31 chr9 4242952 4243050 -138028394 + MER5A DNA MER1_type 35 145 -44 238 237 51 17 chr9 4243878 4243937 -138027507 - L2 LINE L2 -3 3310 3250 551 300 119 83 chr9 4245112 4245632 -138025812 + L1MC4a LINE L1 5373 5677 -444 261 182 0 0 chr9 4246022 4246077 -138025367 + (CA)n Simple_repeat Simple_repeat 2 56 0 609 288 79 14 chr9 4246158 4246373 -138025071 + MIR SINE MIR 2 230 -32 284 278 121 10 chr9 4246603 4246716 -138024728 + MIR SINE MIR 28 159 -49 2044 129 0 0 chr9 4247213 4247544 -138023900 + AluSx SINE Alu 1 331 0 2385 92 0 3 chr9 4248530 4248844 -138022600 + AluSq SINE Alu 1 313 0 180 182 0 0 chr9 4249559 4249592 -138021852 - MIR SINE MIR -107 155 123 393 343 9 23 chr9 4249720 4249936 -138021508 + MLT1J LTR MaLR 217 429 -82 2178 119 0 3 chr9 4249937 4250232 -138021212 + AluSx SINE Alu 1 294 -18 280 287 47 62 chr9 4250986 4251284 -138020160 + L2 LINE L2 2785 3078 -194 2109 134 0 7 chr9 4252172 4252477 -138018967 + AluSx SINE Alu 1 303 -9 1735 168 25 14 chr9 4253237 4253522 -138017922 + AluJo SINE Alu 1 288 -24 247 350 121 7 chr9 4253712 4253852 -138017592 - L2 LINE L2 -2 3311 3156 208 331 221 17 chr9 4253848 4254029 -138017415 - MIR SINE MIR -13 249 32 * 399 191 56 0 chr9 4254050 4254139 -138017305 - L1ME4a LINE L1 -65 6056 5963 589 221 61 31 chr9 4254206 4254369 -138017075 - MER104 DNA Tc2 -4 176 9 233 254 111 71 chr9 4254479 4254605 -138016839 + L2 LINE L2 3142 3272 0 2308 86 0 26 chr9 4254852 4255155 -138016289 - AluY SINE Alu -16 295 1 219 339 95 37 chr9 4255791 4255980 -138015464 - L2 LINE L2 -122 3150 2951 459 0 0 0 chr9 4259662 4259713 -138011731 + (CA)n Simple_repeat Simple_repeat 2 52 0 2443 84 7 0 chr9 4260305 4260614 -138010830 + AluY SINE Alu 1 311 0 219 349 18 37 chr9 4260938 4261047 -138010397 + MIR SINE MIR 21 127 -135 508 306 79 24 chr9 4261104 4261356 -138010088 - L2 LINE L2 0 3313 3048 4583 72 19 60 chr9 4261607 4262275 -138009169 + L1PA10 LINE L1 5528 6168 0 324 273 127 11 chr9 4262399 4262517 -138008927 - MIR3 SINE MIR -3 205 73 295 291 87 44 chr9 4266440 4266646 -138004798 - L2 LINE L2 0 3313 3099 976 71 16 0 chr9 4266655 4266781 -138004663 + AluY SINE Alu 165 292 -19 983 275 83 48 chr9 4266805 4267404 -138004040 - L2 LINE L2 -244 3069 2445 215 61 30 0 chr9 4267534 4267567 -138003877 + (TTG)n Simple_repeat Simple_repeat 2 35 0 399 113 0 0 chr9 4268027 4268089 -138003355 + (TG)n Simple_repeat Simple_repeat 1 62 0 476 300 52 67 chr9 4269220 4269430 -138002014 + L2 LINE L2 3030 3236 -36 252 0 0 0 chr9 4269578 4269606 -138001838 + (TG)n Simple_repeat Simple_repeat 2 29 0 229 367 69 49 chr9 4270049 4270354 -138001090 - L2 LINE L2 -47 3225 2915 2086 177 61 34 chr9 4270506 4270735 -138000709 + L1MA4A LINE L1 2729 2950 -3353 2177 134 19 46 chr9 4270735 4271107 -138000337 - THE1B LTR MaLR 0 364 3 12426 98 4 4 chr9 4271109 4272690 -137998754 - THE1B-int LTR MaLR 0 1580 1 1913 150 33 46 chr9 4272692 4273059 -137998385 - THE1B LTR MaLR -2 362 1 2086 177 61 34 chr9 4273059 4273865 -137997579 + L1MA4A LINE L1 2950 6121 -182 462 189 0 27 chr9 4273876 4273987 -137997457 + L1MA4A LINE L1 6195 6302 -1 5099 168 38 15 chr9 4274283 4275126 -137996318 + MER21B LTR ERV1 1 862 -1 1210 237 18 85 chr9 4276414 4276908 -137994536 + L1MC4 LINE L1 7431 7891 -151 558 132 0 41 chr9 4276946 4277067 -137994377 + (GGGA)n Simple_repeat Simple_repeat 4 119 0 280 205 27 98 chr9 4277079 4277191 -137994253 + L1MC4 LINE L1 7939 8042 0 260 267 11 33 chr9 4277222 4277312 -137994132 - MIR SINE MIR -136 126 39 252 321 83 90 chr9 4277800 4278377 -137993067 + L2 LINE L2 2271 2843 -471 356 399 70 38 chr9 4278433 4278774 -137992670 + L2 LINE L2 2916 3267 -5 246 308 66 0 chr9 4282434 4282525 -137988919 - L2 LINE L2 -3 3269 3173 229 239 0 0 chr9 4282630 4282676 -137988768 - LTR16C LTR ERVL -257 234 189 223 245 19 0 chr9 4284878 4284931 -137986513 - MER5A DNA MER1_type -127 62 9 326 300 0 58 chr9 4285052 4285172 -137986272 - MIR SINE MIR -116 146 34 424 220 165 55 chr9 4286212 4286430 -137985014 + MIR SINE MIR 21 262 0 652 234 18 80 chr9 4290024 4290250 -137981194 - MER58C DNA MER1_type 0 215 4 427 291 200 0 chr9 4290889 4291064 -137980380 - MIR SINE MIR -19 243 34 212 0 36 0 chr9 4291111 4291139 -137980305 + (CAA)n Simple_repeat Simple_repeat 2 30 0 180 111 0 0 chr9 4291459 4291486 -137979958 + (GGA)n Simple_repeat Simple_repeat 3 29 0 1641 170 28 28 chr9 4291794 4292082 -137979362 + AluJo SINE Alu 13 300 -12 1127 101 63 0 chr9 4293319 4293478 -137977966 - L1PA13 LINE L1 -10 6153 5985 815 131 12 101 chr9 4294070 4294238 -137977206 + MER5A DNA MER1_type 23 175 -14 2142 110 0 13 chr9 4296747 4297047 -137974397 + AluSx SINE Alu 3 298 -14 27 29 0 0 chr9 4297797 4297831 -137973613 + AT_rich Low_complexity Low_complexity 1 34 0 636 314 131 23 chr9 4300089 4300516 -137970928 - L2 LINE L2 -2 3311 2839 410 257 138 83 chr9 4300561 4301004 -137970440 + L1ME LINE L1 5352 5818 -303 838 227 66 103 chr9 4301189 4301656 -137969788 + LTR7 LTR ERV1 1 450 0 828 251 55 5 chr9 4301678 4301877 -137969567 - MER63A DNA MER1_type -1 209 1 531 161 301 0 chr9 4302949 4303092 -137968352 - MER5A DNA MER1_type -2 187 2 804 248 140 30 chr9 4303941 4304276 -137967168 - L2 LINE L2 0 3313 2942 1707 167 31 97 chr9 4304480 4304905 -137966539 + MLT2C1 LTR ERVL 1 397 0 256 293 240 33 chr9 4305097 4305247 -137966197 - MIR SINE MIR -80 182 2 2273 70 0 63 chr9 4305339 4305654 -137965790 - AluY SINE Alu -16 295 1 956 288 179 39 chr9 4306291 4307004 -137964440 - L2 LINE L2 -239 3074 2247 342 0 0 0 chr9 4307970 4308008 -137963436 + (CA)n Simple_repeat Simple_repeat 2 39 0 580 248 117 9 chr9 4308019 4308233 -137963211 + LTR16A1 LTR ERVL 217 453 -4 402 359 37 23 chr9 4308466 4308683 -137962761 - L3 LINE CR1 -19 1558 1339 219 36 0 0 chr9 4309055 4309083 -137962361 + (T)n Simple_repeat Simple_repeat 1 28 0 830 150 72 7 chr9 4310159 4310312 -137961132 + MER3 DNA MER1_type 4 166 -43 286 265 35 105 chr9 4310347 4310547 -137960897 - L3 LINE CR1 -99 1478 1293 1555 188 7 11 chr9 4310691 4310983 -137960461 - AluJo SINE Alu 0 312 23 389 297 61 12 chr9 4311051 4311216 -137960228 + MIR SINE MIR 76 248 -14 292 309 127 27 chr9 4311214 4311434 -137960010 - L3 LINE CR1 -369 1208 967 * 446 48 0 16 chr9 4311443 4311505 -137959939 + (TTCC)n Simple_repeat Simple_repeat 1 61 0 340 320 0 10 chr9 4311509 4311609 -137959835 - L2 LINE L2 -18 3295 3197 524 316 47 19 chr9 4311968 4312180 -137959264 + MIR SINE MIR 36 253 -9 471 278 78 17 chr9 4312329 4312509 -137958935 + MIR SINE MIR 2 192 -70 185 385 13 0 chr9 4313958 4314036 -137957408 + L2 LINE L2 2992 3070 -202 1747 153 0 68 chr9 4314491 4314817 -137956627 - AluJo SINE Alu -8 304 1 1671 199 130 31 chr9 4318643 4319059 -137952385 + LTR40b LTR ERVL 3 459 -3 353 333 44 7 chr9 4319606 4319741 -137951703 + MIR3 SINE MIR 5 144 -64 * 400 63 11 11 chr9 4319723 4319789 -137951655 - L1PA13 LINE L1 -211 5952 5906 * 1661 99 37 4 chr9 4319760 4320003 -137951441 + L1PA13 LINE L1 5913 6207 0 207 91 45 45 chr9 4320003 4320047 -137951397 + A-rich Low_complexity Low_complexity 3 180 0 2585 56 0 0 chr9 4320351 4320653 -137950791 - AluY SINE Alu -9 302 1 22 0 0 0 chr9 4320960 4320982 -137950462 + AT_rich Low_complexity Low_complexity 1 22 0 251 247 114 63 chr9 4321622 4321780 -137949664 - MIR SINE MIR -19 243 78 327 25 0 0 chr9 4322274 4322314 -137949130 + (CA)n Simple_repeat Simple_repeat 2 41 0 236 350 63 0 chr9 4322445 4322588 -137948856 + L1ME LINE L1 5669 5820 -301 645 327 156 21 chr9 4323036 4323510 -137947934 + L3 LINE CR1 47 584 -993 417 93 0 0 chr9 4324237 4324291 -137947153 + AluS SINE Alu 21 74 -238 2520 163 133 9 chr9 4325762 4325948 -137945496 + MER6A DNA MER2_type 1 163 -702 231 114 0 0 chr9 4325948 4325983 -137945461 + (TG)n Simple_repeat Simple_repeat 1 35 0 2520 163 133 9 chr9 4325983 4326329 -137945115 + MER6A DNA MER2_type 163 599 -6 2329 85 10 3 chr9 4326584 4326891 -137944553 - AluY SINE Alu -2 309 1 183 250 0 0 chr9 4326930 4326982 -137944462 + CT-rich Low_complexity Low_complexity 1 52 0 1934 118 33 26 chr9 4326982 4327286 -137944158 - AluSx SINE Alu -6 306 1 642 275 75 32 chr9 4327323 4327603 -137943841 + L2 LINE L2 3022 3313 0 266 267 33 22 chr9 4327735 4327825 -137943619 - MER103 DNA DNA -68 98 8 456 303 45 26 chr9 4331969 4332124 -137939320 + L3 LINE CR1 1417 1574 -3 1126 125 0 34 chr9 4333543 4333719 -137937725 - AluSq SINE Alu -19 294 125 207 0 0 0 chr9 4334056 4334079 -137937365 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 229 303 0 53 chr9 4334368 4334444 -137937000 - L2 LINE L2 -37 3276 3205 2357 107 3 0 chr9 4334760 4335070 -137936374 - AluSx SINE Alu -1 311 1 22 0 0 0 chr9 4336344 4336366 -137935078 + AT_rich Low_complexity Low_complexity 1 22 0 519 333 75 50 chr9 4339832 4340270 -137931174 + HAL1b LINE L1 236 684 -664 680 193 93 7 chr9 4341299 4341449 -137929995 + MER5A DNA MER1_type 2 164 -25 328 310 124 8 chr9 4341486 4341615 -137929829 + MER91B DNA MER1_type 46 189 -1 207 0 0 0 chr9 4341715 4341738 -137929706 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 739 70 18 26 chr9 4341740 4341854 -137929590 - L1HS LINE L1 -5 6150 6038 22 35 0 0 chr9 4342205 4342234 -137929210 + AT_rich Low_complexity Low_complexity 1 29 0 180 286 27 129 chr9 4343003 4343150 -137928294 + MER5A DNA MER1_type 48 179 -10 * 420 246 179 30 chr9 4343037 4343171 -137928273 - MER5A DNA MER1_type -32 157 4 1290 216 78 35 chr9 4345102 4345500 -137925944 - MSTB2 LTR MaLR 0 457 43 518 298 153 55 chr9 4346277 4346696 -137924748 + L2 LINE L2 2810 3269 -3 232 224 20 0 chr9 4349220 4349269 -137922175 + MIR SINE MIR 212 261 -1 532 219 16 24 chr9 4349302 4349425 -137922019 - MIR SINE MIR -105 157 36 198 294 15 44 chr9 4350032 4350100 -137921344 + L2 LINE L2 3246 3311 -2 1250 307 115 7 chr9 4350279 4351015 -137920429 + L2 LINE L2 2251 3061 -211 35 24 0 0 chr9 4351938 4351980 -137919464 + AT_rich Low_complexity Low_complexity 1 42 0 465 50 0 0 chr9 4352203 4352263 -137919181 + (CA)n Simple_repeat Simple_repeat 2 61 0 265 250 62 0 chr9 4352889 4352953 -137918491 + L2 LINE L2 3179 3246 -26 412 240 10 21 chr9 4353158 4353254 -137918190 - MER5A DNA MER1_type -84 105 11 324 0 0 0 chr9 4354122 4354158 -137917286 + (TC)n Simple_repeat Simple_repeat 2 37 0 243 0 0 0 chr9 4354157 4354184 -137917260 + (TA)n Simple_repeat Simple_repeat 2 28 0 * 219 152 0 0 chr9 4354195 4354241 -137917203 + (CA)n Simple_repeat Simple_repeat 1 46 0 183 290 120 50 chr9 4354558 4354658 -137916786 - MIR SINE MIR -60 148 42 276 100 0 0 chr9 4356390 4356430 -137915014 + (A)n Simple_repeat Simple_repeat 1 40 0 252 0 0 0 chr9 4356989 4357017 -137914427 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 216 306 88 64 chr9 4358647 4358888 -137912556 - MIR3 SINE MIR -14 248 1 327 355 57 21 chr9 4358932 4359073 -137912371 - L2 LINE L2 -5 3267 3122 1905 168 0 42 chr9 4359411 4359792 -137911652 + MLT1A1 LTR MaLR 1 365 0 459 301 106 17 chr9 4359794 4360030 -137911414 + L2 LINE L2 2699 2955 -359 1506 138 6 114 chr9 4360119 4360230 -137911214 + MLT1B LTR MaLR 69 190 -200 1985 116 53 0 chr9 4360230 4360515 -137910929 + AluSx SINE Alu 1 300 -12 1506 138 6 114 chr9 4360515 4360764 -137910680 + MLT1B LTR MaLR 190 390 0 494 286 79 26 chr9 4360782 4360971 -137910473 + L2 LINE L2 3115 3313 0 1780 173 0 46 chr9 4362283 4362607 -137908837 + AluJo SINE Alu 1 309 -3 181 352 0 70 chr9 4365300 4365371 -137906073 + MIR SINE MIR 32 97 -165 2432 82 3 0 chr9 4365544 4365850 -137905594 - AluSx SINE Alu -1 311 5 258 291 12 47 chr9 4366292 4366378 -137905066 + MER5A DNA MER1_type 6 88 -101 433 262 21 48 chr9 4366439 4366584 -137904860 + L2 LINE L2 3171 3311 -2 2009 78 81 3 chr9 4366874 4367158 -137904286 + AluSx SINE Alu 1 306 -6 620 235 31 15 chr9 4367165 4367361 -137904083 - L1MB7 LINE L1 -10 6174 5976 237 33 0 0 chr9 4367372 4367402 -137904042 + (A)n Simple_repeat Simple_repeat 1 30 0 2282 117 3 0 chr9 4367583 4367891 -137903553 + AluSx SINE Alu 2 310 -2 253 321 6 13 chr9 4367987 4368146 -137903298 + L1MC4a LINE L1 5775 5932 -1876 261 259 74 30 chr9 4369016 4369151 -137902293 - L1ME3A LINE L1 -5 6165 6025 450 165 132 0 chr9 4370920 4371011 -137900433 + MER20 DNA MER1_type 116 218 -1 656 161 0 32 chr9 4371312 4371498 -137899946 + GA-rich Low_complexity Low_complexity 1 180 0 1228 243 118 17 chr9 4373359 4373767 -137897677 - MER77 LTR ERV1 -3 602 154 239 210 170 30 chr9 4373809 4373909 -137897535 - MER77 LTR ERV1 -438 167 54 432 0 0 0 chr9 4377156 4377204 -137894240 + (A)n Simple_repeat Simple_repeat 1 48 0 258 286 97 45 chr9 4378699 4378968 -137892476 - L1ME3A LINE L1 -117 6004 5722 245 260 10 30 chr9 4378973 4379073 -137892371 + (TA)n Simple_repeat Simple_repeat 1 98 0 1010 152 73 0 chr9 4379268 4379459 -137891985 - MER2 DNA MER2_type -134 211 7 288 219 0 14 chr9 4379846 4379919 -137891525 + MIR SINE MIR 61 132 -130 217 231 29 77 chr9 4379888 4379992 -137891452 + L2 LINE L2 2993 3091 -181 * 442 272 76 86 chr9 4380122 4380412 -137891032 - L2 LINE L2 -3 3310 3024 314 239 97 18 chr9 4380673 4380786 -137890658 - MIR3 SINE MIR -76 132 11 186 43 0 0 chr9 4381174 4381197 -137890247 + (TTC)n Simple_repeat Simple_repeat 2 24 0 287 229 324 17 chr9 4381816 4381995 -137889449 + L2 LINE L2 3008 3241 -31 2313 113 25 19 chr9 4383391 4383753 -137887691 + THE1B LTR MaLR 1 364 0 4878 99 4 3 chr9 4383753 4384461 -137886983 + THE1B-int LTR MaLR 1 709 -871 4350 102 16 0 chr9 4384459 4385077 -137886367 + THE1B-int LTR MaLR 953 1580 0 * 2391 125 8 16 chr9 4385077 4385444 -137886000 + THE1B LTR MaLR 1 364 0 26 0 0 0 chr9 4385495 4385521 -137885923 + AT_rich Low_complexity Low_complexity 1 26 0 1732 164 7 18 chr9 4385522 4385808 -137885636 - AluJb SINE Alu -29 283 1 3230 195 52 46 chr9 4386988 4387780 -137883664 + L1MD2 LINE L1 653 1439 -4967 2302 107 16 0 chr9 4387780 4388088 -137883356 + AluSq SINE Alu 1 313 0 3230 195 52 46 chr9 4388088 4388330 -137883114 + L1MD2 LINE L1 1439 1678 -4728 580 144 18 0 chr9 4388330 4388441 -137883003 - L1MA9 LINE L1 -4 6308 6196 3230 195 52 46 chr9 4388441 4388723 -137882721 + L1MD2 LINE L1 1678 1949 -4457 4378 202 50 13 chr9 4388880 4390420 -137881024 + L1MD2 LINE L1 5009 6595 -24 2562 59 0 0 chr9 4392044 4392350 -137879094 - AluY SINE Alu -5 306 1 216 91 23 45 chr9 4393830 4393874 -137877570 + (TATATG)n Simple_repeat Simple_repeat 5 47 0 333 268 89 8 chr9 4394027 4394150 -137877294 - L1ME4a LINE L1 -241 5880 5748 760 212 118 6 chr9 4394321 4394491 -137876953 - MER5A DNA MER1_type 0 189 1 269 106 64 0 chr9 4394512 4394559 -137876885 + U5 snRNA snRNA 1 50 -66 812 308 68 51 chr9 4395109 4396337 -137875107 + L1MDa LINE L1 4 1252 -4867 380 338 125 10 chr9 4396374 4396710 -137874734 + L1MDa LINE L1 1407 1691 -863 652 307 92 10 chr9 4396886 4397397 -137874047 + L1ME3A LINE L1 2958 3510 -2636 2218 71 7 24 chr9 4397426 4397721 -137873723 + AluSp SINE Alu 1 290 -23 266 0 0 29 chr9 4397726 4397761 -137873683 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 317 258 207 35 chr9 4397861 4398319 -137873125 + L1ME3A LINE L1 3712 4248 -1898 1898 295 82 45 chr9 4398380 4399782 -137871662 - L1MC4a LINE L1 -864 6944 5491 543 286 52 44 chr9 4399799 4400317 -137871127 + L1ME3A LINE L1 4325 4846 -1300 438 289 35 39 chr9 4400341 4400653 -137870791 + L1ME3A LINE L1 5647 5957 -213 22 70 0 0 chr9 4400834 4400877 -137870567 + AT_rich Low_complexity Low_complexity 1 43 0 364 348 166 7 chr9 4400967 4401378 -137870066 + L2 LINE L2 2722 3186 -86 247 370 65 0 chr9 4401387 4401495 -137869949 - L2 LINE L2 -9 3263 3149 2131 166 67 34 chr9 4402319 4402796 -137868648 + MLT1D LTR MaLR 13 505 0 260 263 77 72 chr9 4403068 4403262 -137868182 + MLT1L LTR MaLR 197 391 -224 854 137 0 0 chr9 4403458 4403575 -137867869 + FLAM_C SINE Alu 1 117 -16 248 378 96 22 chr9 4404369 4404504 -137866940 - L2 LINE L2 -12 3260 3116 236 238 188 20 chr9 4405089 4405190 -137866254 - MIR SINE MIR -7 255 138 309 232 49 0 chr9 4405574 4405656 -137865788 + L1MC/D LINE L1 5567 5652 -469 294 273 10 20 chr9 4405684 4405783 -137865661 + (CATA)n Simple_repeat Simple_repeat 1 98 0 846 255 48 0 chr9 4405799 4406007 -137865437 + MIR SINE MIR 2 219 -43 267 210 86 25 chr9 4406057 4406138 -137865306 + L1MC/D LINE L1 5712 5797 -2011 225 0 0 0 chr9 4406665 4406690 -137864754 + (A)n Simple_repeat Simple_repeat 1 25 0 375 332 93 21 chr9 4406927 4407120 -137864324 - MIR SINE MIR -36 226 20 527 303 40 34 chr9 4409143 4409318 -137862126 - MIR3 SINE MIR -21 187 12 520 188 255 0 chr9 4410341 4410490 -137860954 - MER20 DNA MER1_type -2 217 31 732 301 35 13 chr9 4410547 4410776 -137860668 + MIR SINE MIR 9 242 -20 237 310 41 47 chr9 4410801 4410972 -137860472 + MLT2E LTR ERVL 41 210 -418 192 269 39 39 chr9 4411644 4411722 -137859722 - L2 LINE L2 -52 3220 3143 217 364 50 8 chr9 4412532 4412653 -137858791 + L2 LINE L2 3146 3271 -1 2196 119 0 0 chr9 4413120 4413415 -137858029 - AluSq SINE Alu 0 313 19 187 265 0 20 chr9 4413903 4413952 -137857492 + L2 LINE L2 3213 3260 -12 204 264 0 83 chr9 4414256 4414328 -137857116 + MER91A DNA MER1_type 2 67 -129 1762 193 32 10 chr9 4414715 4415115 -137856329 + MLT1C LTR MaLR 59 467 0 353 284 9 18 chr9 4415115 4415224 -137856220 - MIR3 SINE MIR -42 166 59 331 271 148 63 chr9 4415250 4415534 -137855910 - L2 LINE L2 -1 3312 3005 2356 101 0 3 chr9 4415966 4416273 -137855171 + AluSx SINE Alu 1 306 -6 212 147 0 0 chr9 4418503 4418537 -137852907 + (GGAA)n Simple_repeat Simple_repeat 3 36 0 203 263 11 63 chr9 4419643 4419738 -137851706 - MIR SINE MIR -133 129 40 805 239 73 121 chr9 4419820 4420081 -137851363 - L2 LINE L2 -6 3307 3078 1540 167 21 76 chr9 4420081 4420411 -137851033 - AluJo SINE Alu 0 312 1 805 239 73 121 chr9 4420411 4420630 -137850814 - L2 LINE L2 -235 3078 2850 293 0 27 0 chr9 4420649 4420686 -137850758 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 294 73 0 0 chr9 4421510 4421551 -137849893 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 448 290 27 39 chr9 4422450 4422641 -137848803 - MIR SINE MIR -25 237 46 2020 224 50 32 chr9 4422879 4423445 -137847999 + L1ME1 LINE L1 5584 6159 -7 25 31 0 0 chr9 4423507 4423539 -137847905 + AT_rich Low_complexity Low_complexity 1 32 0 339 222 81 40 chr9 4424148 4424247 -137847197 + MER5C DNA MER1_type 21 123 -201 240 192 0 0 chr9 4424391 4424443 -137847001 + MER5C DNA MER1_type 270 321 -3 387 316 121 16 chr9 4425115 4425305 -137846139 + L2 LINE L2 3016 3225 -47 2161 108 7 10 chr9 4425327 4425633 -137845811 + AluSx SINE Alu 1 305 -7 2099 121 0 0 chr9 4425741 4426046 -137845398 - AluSc SINE Alu -4 305 1 189 0 0 0 chr9 4426888 4426909 -137844535 + (TCTA)n Simple_repeat Simple_repeat 1 21 0 321 292 186 6 chr9 4427177 4427338 -137844106 - MIR SINE MIR -48 214 25 204 40 0 0 chr9 4427364 4427389 -137844055 + (GGGAGA)n Simple_repeat Simple_repeat 1 25 0 494 273 74 51 chr9 4428495 4428711 -137842733 + MIR SINE MIR 28 248 -14 652 232 82 1 chr9 4428857 4429072 -137842372 - L1ME3A LINE L1 -7 6155 5929 7132 109 34 9 chr9 4429681 4431074 -137840370 - L1MA1 LINE L1 -4 6298 4863 4186 168 42 9 chr9 4431259 4432022 -137839422 + L1MB5 LINE L1 5386 6173 -1 40 37 0 0 chr9 4432798 4432852 -137838592 + AT_rich Low_complexity Low_complexity 1 54 0 2408 70 3 3 chr9 4433213 4433513 -137837931 - AluY SINE Alu -11 300 1 324 366 41 0 chr9 4433514 4433637 -137837807 - MER115 DNA AcHobo -175 518 391 740 345 9 4 chr9 4433686 4433915 -137837529 - MER115 DNA AcHobo -413 280 51 425 264 28 9 chr9 4433920 4434026 -137837418 + MER5A DNA MER1_type 7 114 -75 234 0 0 0 chr9 4434225 4434251 -137837193 + (A)n Simple_repeat Simple_repeat 1 26 0 1347 201 30 30 chr9 4434322 4434590 -137836854 + AluJb SINE Alu 23 290 -22 451 311 122 31 chr9 4435488 4435710 -137835734 - MIR SINE MIR -20 242 1 313 307 62 22 chr9 4437345 4437524 -137833920 + MIR SINE MIR 21 206 -56 710 285 60 4 chr9 4437596 4437828 -137833616 + MIR SINE MIR 2 252 -10 347 0 23 0 chr9 4437902 4437945 -137833499 + (CA)n Simple_repeat Simple_repeat 1 44 0 475 328 39 6 chr9 4439866 4440046 -137831398 - MIR3 SINE MIR -3 205 20 598 209 99 41 chr9 4441218 4441390 -137830054 + MER5A DNA MER1_type 1 182 -7 249 151 19 38 chr9 4441500 4441553 -137829891 - MER5B DNA MER1_type 0 178 127 630 233 5 87 chr9 4441554 4441760 -137829684 + MER20 DNA MER1_type 31 219 0 2808 139 90 25 chr9 4441988 4442512 -137828932 + LTR64 LTR ERVK 1 558 0 2084 103 3 14 chr9 4445706 4445997 -137825447 - AluSg SINE Alu -22 288 1 1284 335 159 23 chr9 4446172 4447290 -137824154 + L3 LINE CR1 105 1374 -203 2151 148 56 8 chr9 4447381 4447739 -137823705 + THE1C LTR MaLR 1 375 0 234 349 70 0 chr9 4447948 4448034 -137823410 - L2 LINE L2 -48 3224 3133 7676 52 1 0 chr9 4449970 4450970 -137820474 + L1PA6 LINE L1 5161 6154 0 3259 177 39 16 chr9 4452678 4453294 -137818150 - L1MB5 LINE L1 0 6174 5545 1868 163 7 3 chr9 4453315 4453609 -137817835 - AluSx SINE Alu -17 295 1 455 232 20 0 chr9 4453856 4453955 -137817489 + L2 LINE L2 3141 3241 -31 22 0 0 0 chr9 4454064 4454086 -137817358 + AT_rich Low_complexity Low_complexity 1 22 0 287 321 47 0 chr9 4454571 4454677 -137816767 + L2 LINE L2 3188 3298 -15 210 262 24 24 chr9 4456942 4457026 -137814418 + GA-rich Low_complexity Low_complexity 1 84 0 570 221 15 113 chr9 4457205 4457400 -137814044 - MER91B DNA MER1_type -14 176 1 904 230 6 11 chr9 4457530 4457708 -137813736 + MER45A DNA AcHobo 1 177 -1 896 269 114 21 chr9 4458820 4459063 -137812381 - L1MCc LINE L1 -4887 1536 1242 2345 87 0 7 chr9 4459063 4459372 -137812072 + AluY SINE Alu 5 311 0 896 269 114 21 chr9 4459372 4459515 -137811929 - L1MCc LINE L1 -5181 1242 1114 318 288 154 34 chr9 4459913 4460165 -137811279 - L1MCc LINE L1 -5994 429 209 234 0 0 0 chr9 4460165 4460191 -137811253 + (TG)n Simple_repeat Simple_repeat 1 26 0 * 411 21 0 0 chr9 4460190 4460238 -137811206 + (GA)n Simple_repeat Simple_repeat 1 48 0 318 288 154 34 chr9 4460191 4460336 -137811108 - L1MCc LINE L1 -6214 209 37 351 0 0 0 chr9 4461380 4461419 -137810025 + (TG)n Simple_repeat Simple_repeat 2 40 0 220 402 0 8 chr9 4462099 4462216 -137809228 + MIR3 SINE MIR 77 192 -16 380 214 87 8 chr9 4462281 4462407 -137809037 + MER117 DNA MER1_type 47 182 -15 590 228 142 14 chr9 4463993 4464312 -137807132 - MLT1J2 LTR MaLR 0 450 60 1579 187 33 19 chr9 4464983 4465347 -137806097 + MER96B DNA MER1_type? 49 417 0 371 256 13 0 chr9 4465351 4465429 -137806015 + L2 LINE L2 3194 3272 0 201 74 0 0 chr9 4465880 4465907 -137805537 + (T)n Simple_repeat Simple_repeat 1 27 0 202 330 121 0 chr9 4466301 4466392 -137805052 + MIR SINE MIR 59 160 -102 194 392 21 10 chr9 4467474 4467571 -137803873 - L3 LINE CR1 -45 1532 1435 616 182 224 16 chr9 4467573 4468079 -137803365 - LTR50 LTR ERVL -2 793 12 361 291 99 7 chr9 4468169 4468320 -137803124 - L3 LINE CR1 -321 1256 1092 423 291 70 62 chr9 4468324 4468587 -137802857 + L1ME4a LINE L1 5573 5843 -278 1654 183 0 7 chr9 4468587 4468877 -137802567 - AluJb SINE Alu -24 288 1 423 291 70 62 chr9 4468877 4469125 -137802319 + L1ME4a LINE L1 5843 6088 -33 342 345 63 17 chr9 4469244 4469418 -137802026 - L3 LINE CR1 -503 1074 893 365 271 7 45 chr9 4469492 4469508 -137801936 - L1MA10 LINE L1 -1 6333 6318 1683 222 19 60 chr9 4469508 4470021 -137801423 - L1ME2 LINE L1 -10 6154 5663 2075 83 3 31 chr9 4470052 4470365 -137801079 - AluY SINE Alu 0 305 1 736 185 37 0 chr9 4470401 4470536 -137800908 - L1MA10 LINE L1 -15 6319 6180 185 0 40 0 chr9 4470536 4470561 -137800883 + (TTG)n Simple_repeat Simple_repeat 2 27 0 269 313 37 37 chr9 4470670 4470804 -137800640 + MIR3 SINE MIR 66 199 -9 377 204 82 61 chr9 4471770 4471917 -137799527 - MIR SINE MIR -10 252 103 334 320 79 28 chr9 4472189 4472367 -137799077 + MER5A DNA MER1_type 2 188 -1 190 222 111 16 chr9 4472944 4473007 -137798437 + L3 LINE CR1 305 373 -1204 205 171 0 24 chr9 4475026 4475067 -137796377 + (CA)n Simple_repeat Simple_repeat 2 41 0 273 197 0 0 chr9 4475105 4475171 -137796273 + (CA)n Simple_repeat Simple_repeat 1 66 0 298 281 39 55 chr9 4476603 4476731 -137794713 + MIR3 SINE MIR 73 198 -10 216 97 0 0 chr9 4476794 4476825 -137794619 + (CA)n Simple_repeat Simple_repeat 2 32 0 324 286 71 42 chr9 4477512 4477823 -137793621 - HAL1b LINE L1 -630 718 399 304 203 63 0 chr9 4478256 4478335 -137793109 - LTR50 LTR ERVL 0 795 712 25 65 0 0 chr9 4478336 4478382 -137793062 + AT_rich Low_complexity Low_complexity 1 46 0 21 95 0 0 chr9 4478389 4478452 -137792992 + AT_rich Low_complexity Low_complexity 1 63 0 596 252 5 48 chr9 4478843 4479049 -137792395 - LTR41 LTR ERVL -576 197 1 309 345 81 43 chr9 4480552 4480761 -137790683 - L3 LINE CR1 -1313 264 48 1300 132 10 29 chr9 4480897 4481101 -137790343 - AluSx SINE Alu -69 243 44 442 325 101 38 chr9 4481240 4481606 -137789838 - L1 LINE L1 -968 5178 4790 268 277 18 9 chr9 4482134 4482246 -137789198 - L1 LINE L1 -2238 3908 3796 2370 89 0 7 chr9 4482703 4483006 -137788438 - AluY SINE Alu -10 301 1 418 252 49 34 chr9 4483017 4483209 -137788235 - MIR SINE MIR -57 205 17 1948 58 8 0 chr9 4484174 4484435 -137787009 + L1PA5 LINE L1 5739 6001 -153 318 139 0 0 chr9 4484435 4484507 -137786937 + (A)n Simple_repeat Simple_repeat 1 72 0 320 272 40 24 chr9 4484516 4484641 -137786803 + L1M4 LINE L1 3073 3199 -2947 205 286 0 0 chr9 4484730 4484800 -137786644 + C-rich Low_complexity Low_complexity 1 70 0 210 37 0 0 chr9 4484829 4484856 -137786588 + (C)n Simple_repeat Simple_repeat 1 27 0 231 103 73 0 chr9 4484856 4484924 -137786520 + A-rich Low_complexity Low_complexity 3 75 0 2258 139 38 12 chr9 4485708 4486125 -137785319 + MSTA LTR MaLR 1 428 0 373 327 108 75 chr9 4486292 4486653 -137784791 + L2 LINE L2 2900 3272 0 201 222 19 19 chr9 4488269 4488323 -137783121 + GA-rich Low_complexity Low_complexity 1 54 0 204 303 40 61 chr9 4488398 4488497 -137782947 + L2 LINE L2 3168 3264 -8 303 319 42 25 chr9 4488745 4488864 -137782580 - L2 LINE L2 -4 3309 3189 24 0 0 0 chr9 4489603 4489627 -137781817 + AT_rich Low_complexity Low_complexity 1 24 0 1516 166 69 42 chr9 4489681 4489970 -137781474 + AluJo SINE Alu 1 297 -15 23 0 0 0 chr9 4490589 4490612 -137780832 + AT_rich Low_complexity Low_complexity 1 23 0 204 296 0 42 chr9 4490745 4490816 -137780628 + MIR SINE MIR 14 81 -181 566 274 121 21 chr9 4491018 4491208 -137780236 + MIR SINE MIR 4 212 -50 1717 172 0 40 chr9 4491210 4491512 -137779932 + AluJo SINE Alu 1 290 -22 21 36 0 0 chr9 4491583 4491611 -137779833 + AT_rich Low_complexity Low_complexity 1 28 0 198 143 0 0 chr9 4491650 4491685 -137779759 + (CA)n Simple_repeat Simple_repeat 2 36 0 395 169 96 0 chr9 4491705 4491788 -137779656 - Tigger3b DNA MER2_type 0 1231 1141 973 98 93 27 chr9 4491797 4491980 -137779464 + THE1C LTR MaLR 181 375 0 * 5083 132 56 33 chr9 4491980 4492290 -137779154 - Tigger3b DNA MER2_type -2008 1020 719 2062 84 0 4 chr9 4492290 4492551 -137778893 - AluY SINE Alu -13 298 39 5083 132 56 33 chr9 4492551 4493237 -137778207 - Tigger3b DNA MER2_type -2309 719 1 831 172 28 0 chr9 4493249 4493394 -137778050 - MIR SINE MIR -112 150 2 24 32 0 0 chr9 4493911 4493942 -137777502 + AT_rich Low_complexity Low_complexity 1 31 0 311 282 26 43 chr9 4494373 4494490 -137776954 + L1ME LINE L1 5448 5562 -559 2281 79 9 3 chr9 4495030 4495360 -137776084 - L1MA5A LINE L1 0 6297 5966 485 284 102 49 chr9 4495889 4496114 -137775330 - MIR SINE MIR -6 256 20 1938 142 0 0 chr9 4496867 4497176 -137774268 + AluSx SINE Alu 1 309 0 1675 153 63 137 chr9 4499288 4499792 -137771652 - MLT1C LTR MaLR 0 467 1 293 211 9 114 chr9 4500076 4500190 -137771254 + MIR SINE MIR 90 191 -71 294 294 104 51 chr9 4501200 4501405 -137770039 + MIR SINE MIR 9 212 -50 871 225 18 31 chr9 4502581 4502803 -137768641 + MER20 DNA MER1_type 1 219 0 25 0 0 0 chr9 4502836 4502861 -137768583 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr9 4503365 4503386 -137768058 + AT_rich Low_complexity Low_complexity 1 21 0 1737 244 175 38 chr9 4504117 4504962 -137766482 + L2 LINE L2 2064 3022 -291 632 222 26 31 chr9 4507377 4507571 -137763873 + MLT1J2 LTR MaLR 1 193 -257 230 239 256 26 chr9 4507598 4507715 -137763729 + MLT1J2 LTR MaLR 266 409 -41 287 196 0 72 chr9 4507986 4508083 -137763361 - L1MC5 LINE L1 -30 7931 7842 390 325 149 48 chr9 4509862 4510277 -137761167 + L2 LINE L2 2816 3272 0 330 294 71 8 chr9 4510320 4510446 -137760998 - MER94 DNA DNA 0 134 1 21 36 0 0 chr9 4512020 4512048 -137759396 + AT_rich Low_complexity Low_complexity 1 28 0 556 194 276 0 chr9 4512616 4512750 -137758694 + MER5B DNA MER1_type 6 176 -2 402 328 67 36 chr9 4513214 4513680 -137757764 - L1ME3 LINE L1 -238 5924 5445 358 308 122 65 chr9 4518103 4518626 -137752818 - L1M2 LINE L1 -5481 1368 816 198 286 36 36 chr9 4519391 4519447 -137751997 - L2 LINE L2 -12 3260 3205 193 349 45 0 chr9 4521513 4521579 -137749865 + L2 LINE L2 3235 3303 -10 378 0 0 0 chr9 4521758 4521800 -137749644 + (CA)n Simple_repeat Simple_repeat 2 43 0 648 266 87 57 chr9 4523325 4523674 -137747770 + L1ME4a LINE L1 5415 5752 -369 24 0 0 0 chr9 4523674 4523698 -137747746 + AT_rich Low_complexity Low_complexity 1 24 0 648 266 87 57 chr9 4523698 4524016 -137747428 + L1ME4a LINE L1 5752 6119 -2 223 260 117 0 chr9 4524930 4525007 -137746437 - MIR SINE MIR -66 142 57 234 105 0 0 chr9 4525755 4525793 -137745651 + (TG)n Simple_repeat Simple_repeat 2 39 0 21 36 0 0 chr9 4526334 4526362 -137745082 + AT_rich Low_complexity Low_complexity 1 28 0 206 300 29 0 chr9 4527330 4527400 -137744044 - MIR SINE MIR -79 129 58 459 218 143 0 chr9 4528077 4528224 -137743220 - MER104 DNA Tc2 -3 177 10 344 311 0 30 chr9 4528267 4528402 -137743042 + L2 LINE L2 2936 3066 -206 263 261 148 106 chr9 4529328 4529470 -137741974 + MIR SINE MIR 2 149 -113 2562 116 57 7 chr9 4529485 4529892 -137741552 + MSTA LTR MaLR 1 427 -1 8671 166 23 4 chr9 4529894 4531495 -137739949 + MSTA-int LTR MaLR 15 1645 -6 2432 142 54 5 chr9 4531500 4531908 -137739536 + MSTA LTR MaLR 1 428 0 285 307 59 50 chr9 4531908 4532009 -137739435 + MIR SINE MIR 161 262 0 23 0 0 0 chr9 4532180 4532203 -137739241 + AT_rich Low_complexity Low_complexity 1 23 0 240 320 68 19 chr9 4532708 4532811 -137738633 - L2 LINE L2 -24 3248 3141 279 213 12 25 chr9 4532858 4532938 -137738506 - MER116 DNA Mariner -1 79 1 654 214 26 7 chr9 4532979 4533133 -137738311 + MIR SINE MIR 50 206 -56 362 214 401 6 chr9 4533309 4533491 -137737953 - L1MC4 LINE L1 -146 7896 7643 777 190 107 19 chr9 4533626 4533831 -137737613 + MIR SINE MIR 13 235 -27 450 0 0 0 chr9 4533963 4534013 -137737431 + (CA)n Simple_repeat Simple_repeat 2 51 0 278 250 48 73 chr9 4534569 4534728 -137736716 + MIR SINE MIR 49 212 -50 23 0 0 0 chr9 4535357 4535380 -137736064 + AT_rich Low_complexity Low_complexity 1 23 0 324 261 26 17 chr9 4536554 4536669 -137734775 + MER103 DNA DNA 4 119 -47 262 225 31 132 chr9 4536977 4537106 -137734338 - MER5B DNA MER1_type 0 178 63 846 238 8 10 chr9 4538734 4538964 -137732480 + MIR SINE MIR 20 247 -15 195 237 0 0 chr9 4539435 4539473 -137731971 + L2 LINE L2 3231 3268 -4 1678 138 43 72 chr9 4539735 4540082 -137731362 - MER1B DNA MER1_type 0 337 1 1593 165 0 0 chr9 4540237 4540491 -137730953 + AluJb SINE Alu 59 312 0 2300 99 0 3 chr9 4540934 4541237 -137730207 - AluSq SINE Alu -11 302 1 21 0 0 0 chr9 4542780 4542801 -137728643 + AT_rich Low_complexity Low_complexity 1 21 0 2068 150 23 51 chr9 4543210 4543370 -137728074 - L1MA9 LINE L1 0 6312 6149 180 77 0 0 chr9 4543370 4543396 -137728048 + (TG)n Simple_repeat Simple_repeat 2 27 0 2068 150 23 51 chr9 4543396 4543422 -137728022 - L1MA9 LINE L1 -163 6149 6124 2489 75 7 0 chr9 4543422 4543729 -137727715 + AluSx SINE Alu 1 309 -3 2068 150 23 51 chr9 4543729 4543974 -137727470 - L1MA9 LINE L1 -188 6124 5892 197 226 28 19 chr9 4545821 4545927 -137725517 + CT-rich Low_complexity Low_complexity 2 108 0 22 0 0 0 chr9 4547953 4547975 -137723469 + AT_rich Low_complexity Low_complexity 1 22 0 215 275 52 136 chr9 4548359 4548785 -137722659 + L2 LINE L2 2859 3248 -24 201 156 0 0 chr9 4549239 4549271 -137722173 + (CTA)n Simple_repeat Simple_repeat 1 32 0 327 285 85 15 chr9 4549331 4549461 -137721983 - MIR SINE MIR -14 248 110 180 111 0 0 chr9 4549988 4550015 -137721429 + (ATG)n Simple_repeat Simple_repeat 2 28 0 185 250 0 0 chr9 4550641 4550685 -137720759 + L2 LINE L2 3212 3255 -17 620 270 55 0 chr9 4550837 4551000 -137720444 - MIR3 SINE MIR -3 205 34 225 269 224 13 chr9 4552344 4552500 -137718944 + L3 LINE CR1 1370 1558 -19 352 288 54 18 chr9 4552627 4552738 -137718706 + MIR3 SINE MIR 83 197 -11 388 275 231 16 chr9 4552790 4553087 -137718357 + L1ME4a LINE L1 4224 4596 -1550 868 200 41 45 chr9 4553087 4553307 -137718137 - MER20 DNA MER1_type 0 219 1 388 275 231 16 chr9 4553307 4553329 -137718115 + L1ME4a LINE L1 4596 4612 -1534 2097 133 0 0 chr9 4553419 4553705 -137717739 + AluSx SINE Alu 1 286 -26 934 276 100 39 chr9 4553927 4554488 -137716956 - MLT1G1 LTR MaLR 0 595 1 308 292 118 6 chr9 4554592 4554753 -137716691 + L1ME4a LINE L1 5120 5298 -848 289 257 62 35 chr9 4555027 4555171 -137716273 + L1ME4a LINE L1 5764 5911 -210 817 185 21 48 chr9 4555845 4556034 -137715410 - MER5A DNA MER1_type -5 184 1 181 415 0 12 chr9 4556554 4556636 -137714808 - L2 LINE L2 -2 3270 3190 787 189 7 7 chr9 4556993 4557136 -137714308 + MER5A DNA MER1_type 1 143 -46 529 337 71 68 chr9 4558827 4559237 -137712207 - L2 LINE L2 -65 3248 2838 224 297 127 34 chr9 4559256 4559374 -137712070 + L2 LINE L2 3140 3268 -4 2308 122 0 0 chr9 4559574 4559885 -137711559 + AluSx SINE Alu 1 311 -1 1435 156 30 117 chr9 4561099 4561432 -137710012 + AluJo SINE Alu 1 304 -8 28 0 0 0 chr9 4561434 4561462 -137709982 + AT_rich Low_complexity Low_complexity 1 28 0 1305 193 18 115 chr9 4561714 4561813 -137709631 - MLT1C LTR MaLR 0 467 360 2059 110 10 36 chr9 4561813 4562121 -137709323 - AluSx SINE Alu -10 302 3 1305 193 18 115 chr9 4562121 4562504 -137708940 - MLT1C LTR MaLR -107 360 18 2167 89 26 13 chr9 4562715 4563019 -137708425 + AluY SINE Alu 1 308 -3 260 328 117 16 chr9 4563202 4563330 -137708114 - MIR3 SINE MIR -32 176 36 279 133 0 0 chr9 4563382 4563427 -137708017 + (CA)n Simple_repeat Simple_repeat 1 45 0 400 335 90 13 chr9 4563486 4563641 -137707803 - MIR3 SINE MIR -12 196 30 434 347 78 25 chr9 4563706 4563948 -137707496 + MIR SINE MIR 2 256 -6 2368 95 0 0 chr9 4565296 4565601 -137705843 + AluSq SINE Alu 1 305 -8 323 297 124 59 chr9 4565815 4566105 -137705339 - L2 LINE L2 -961 2353 2045 520 320 117 17 chr9 4566125 4566356 -137705088 + MIR SINE MIR 8 261 -1 256 316 175 18 chr9 4566641 4566812 -137704632 + MIR3 SINE MIR 4 201 -7 287 258 174 45 chr9 4567224 4567356 -137704088 - MIR3 SINE MIR -30 178 30 230 268 73 12 chr9 4567530 4567612 -137703832 - MIR SINE MIR -13 249 163 375 306 54 0 chr9 4567619 4567730 -137703714 + L2 LINE L2 3153 3269 -3 255 333 8 58 chr9 4567734 4567854 -137703590 - MIR SINE MIR -121 141 28 282 95 0 0 chr9 4568316 4568358 -137703086 + (CA)n Simple_repeat Simple_repeat 2 43 0 272 309 0 24 chr9 4569548 4569632 -137701812 + MIR SINE MIR 17 98 -110 1349 187 50 39 chr9 4569651 4570010 -137701434 + L1MC4 LINE L1 7680 8042 0 218 136 45 0 chr9 4572734 4572778 -137698666 + (TGAA)n Simple_repeat Simple_repeat 2 47 0 446 300 17 11 chr9 4573034 4573214 -137698230 - Charlie8 DNA MER1_type -2215 202 22 369 0 0 0 chr9 4573699 4573740 -137697704 + (CA)n Simple_repeat Simple_repeat 2 42 0 918 176 31 6 chr9 4573748 4573907 -137697537 - AluJb SINE Alu -21 291 129 267 103 0 0 chr9 4574051 4574090 -137697354 + (CA)n Simple_repeat Simple_repeat 2 40 0 497 303 85 0 chr9 4575929 4576094 -137695350 - MIR SINE MIR -37 225 47 378 268 72 14 chr9 4576356 4576494 -137694950 - L1ME4a LINE L1 -12 6109 5964 269 303 0 91 chr9 4576643 4576754 -137694690 - L1ME4a LINE L1 -344 5777 5686 2147 137 0 0 chr9 4576754 4577061 -137694383 - AluSq SINE Alu -6 307 1 269 303 0 91 chr9 4577061 4577124 -137694320 - L1ME4a LINE L1 -435 5686 5619 396 0 0 0 chr9 4577268 4577312 -137694132 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 190 293 207 0 chr9 4577481 4577539 -137693905 + MIR SINE MIR 37 106 -102 30 0 0 0 chr9 4579007 4579037 -137692407 + AT_rich Low_complexity Low_complexity 1 30 0 326 220 230 0 chr9 4579560 4579660 -137691784 - MER94 DNA DNA -3 131 9 2318 95 0 0 chr9 4579765 4580060 -137691384 + AluSx SINE Alu 1 295 -17 268 251 137 69 chr9 4580511 4580686 -137690758 + MIR SINE MIR 65 251 -11 245 219 114 49 chr9 4581629 4581752 -137689692 + LTR67 LTR ERVL 2 132 -425 * 404 259 126 74 chr9 4581745 4582158 -137689286 + MLT1H LTR MaLR 52 547 -2 274 170 0 21 chr9 4582410 4582457 -137688987 + Charlie8 DNA MER1_type 231 276 -2141 229 158 0 26 chr9 4582848 4582886 -137688558 - MLT1F LTR MaLR -504 38 2 228 279 14 40 chr9 4583019 4583107 -137688337 - MIR SINE MIR -55 153 68 245 333 130 25 chr9 4583222 4583384 -137688060 + L3 LINE CR1 1204 1382 -195 389 288 68 8 chr9 4583672 4583804 -137687640 + MIR3 SINE MIR 49 188 -20 1886 226 51 31 chr9 4585099 4585599 -137685845 - L1ME1 LINE L1 -5 6161 5651 342 256 0 43 chr9 4585692 4585809 -137685635 - LTR33 LTR ERVL 0 521 410 547 333 0 6 chr9 4585893 4586073 -137685371 - LTR33 LTR ERVL -307 214 36 27380 32 3 1 chr9 4586142 4590036 -137681408 - L1PA3 LINE L1 -3 6152 2247 11270 48 1 1 chr9 4590037 4591421 -137680023 + L1PA3 LINE L1 854 2237 -3909 388 157 43 0 chr9 4591423 4591493 -137679951 + HsTC2 DNA Tc2 1823 1895 -3 31 0 0 0 chr9 4592005 4592036 -137679408 + AT_rich Low_complexity Low_complexity 1 31 0 207 114 0 0 chr9 4592757 4592792 -137678652 + (CATG)n Simple_repeat Simple_repeat 2 36 0 186 250 0 0 chr9 4592946 4593002 -137678442 + A-rich Low_complexity Low_complexity 1 56 0 423 346 118 36 chr9 4593009 4593291 -137678153 - L2 LINE L2 -340 2974 2717 1460 192 96 16 chr9 4593291 4593603 -137677841 + MER58B DNA MER1_type 5 341 0 423 346 118 36 chr9 4593603 4593877 -137677567 - L2 LINE L2 -597 2717 2372 511 309 22 45 chr9 4593958 4594181 -137677263 + Tigger8 DNA MER2_type 46 263 -403 207 0 0 0 chr9 4594182 4594205 -137677239 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2124 95 3 11 chr9 4594213 4594497 -137676947 - AluSx SINE Alu -30 282 1 21 0 0 0 chr9 4594585 4594606 -137676838 + AT_rich Low_complexity Low_complexity 1 21 0 3925 156 2 2 chr9 4594655 4595265 -137676179 + L1PA15-16 LINE L1 25 634 -6215 6745 155 101 87 chr9 4595265 4596936 -137674508 + pTR5 LTR ERV1 745 2438 0 13646 195 13 47 chr9 4596938 4601991 -137669453 + L1PA15-16 LINE L1 628 5851 -1094 1819 140 4 11 chr9 4601991 4602269 -137669175 + AluSx SINE Alu 1 276 -36 2078 85 0 29 chr9 4602269 4602550 -137668894 - AluY SINE Alu 0 311 39 13646 195 13 47 chr9 4602550 4602564 -137668880 + L1PA15-16 LINE L1 5850 5863 -1082 295 40 20 20 chr9 4602564 4602614 -137668830 + (TAAAA)n Simple_repeat Simple_repeat 2 51 0 13646 195 13 47 chr9 4602614 4603666 -137667778 + L1PA15-16 LINE L1 5863 6399 -546 3407 129 33 25 chr9 4603689 4604241 -137667203 + L1PA16 LINE L1 5602 6157 -9 396 314 70 39 chr9 4604268 4604526 -137666918 + Tigger8 DNA MER2_type 398 663 -3 1979 117 21 3 chr9 4604773 4605063 -137666381 + AluSq SINE Alu 1 295 -18 1823 115 15 8 chr9 4605071 4605331 -137666113 + AluSx SINE Alu 39 300 -12 751 236 98 94 chr9 4605392 4605893 -137665551 + MLT1K LTR MaLR 38 540 -48 183 80 0 0 chr9 4606106 4606131 -137665313 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 443 322 17 51 chr9 4607703 4607939 -137663505 - MIR SINE MIR -26 236 9 230 219 37 49 chr9 4609213 4609295 -137662149 - Charlie7 DNA MER1_type -2503 109 29 244 284 68 0 chr9 4609303 4609377 -137662067 - MIR3 SINE MIR -48 160 82 427 267 65 29 chr9 4609419 4609603 -137661841 + MER20B DNA MER1_type 5 198 -21 1051 173 99 15 chr9 4609821 4610023 -137661421 - MER20 DNA MER1_type 0 219 1 361 200 35 35 chr9 4610169 4610254 -137661190 + L2 LINE L2 3227 3311 -2 3013 201 53 5 chr9 4611696 4612318 -137659126 + L1MB8 LINE L1 5526 6177 -1 712 286 85 69 chr9 4612504 4613167 -137658277 - L2 LINE L2 0 3272 2596 281 271 106 40 chr9 4613305 4613456 -137657988 + L2 LINE L2 2927 3087 -185 1115 180 67 0 chr9 4613575 4613769 -137657675 + MER3 DNA MER1_type 2 208 -1 315 322 51 8 chr9 4613769 4613887 -137657557 + L2 LINE L2 3191 3313 0 385 340 106 7 chr9 4613927 4614068 -137657376 - L2 LINE L2 0 3313 3159 315 71 0 0 chr9 4615452 4615494 -137655950 + (TG)n Simple_repeat Simple_repeat 2 43 0 2365 88 0 25 chr9 4616328 4616645 -137654799 + AluY SINE Alu 1 309 -2 25 0 0 0 chr9 4617459 4617484 -137653960 + AT_rich Low_complexity Low_complexity 1 25 0 496 288 118 9 chr9 4618181 4618410 -137653034 + L2 LINE L2 2339 2592 -722 2445 56 17 0 chr9 4618427 4618715 -137652729 - AluY SINE Alu -18 293 1 969 154 32 21 chr9 4618717 4618905 -137652539 + MER3 DNA MER1_type 16 205 -4 364 301 156 6 chr9 4619022 4619195 -137652249 + L2 LINE L2 3111 3309 -4 3082 190 134 40 chr9 4619967 4620750 -137650694 + L1MC4 LINE L1 6701 7573 -469 576 197 30 53 chr9 4620750 4620882 -137650562 + FLAM_A SINE Alu 2 130 -3 3082 190 134 40 chr9 4620882 4620955 -137650489 + L1MC4 LINE L1 7573 7638 -404 999 164 0 0 chr9 4620970 4621122 -137650322 + AluJb SINE Alu 131 282 -30 180 0 0 0 chr9 4621122 4621142 -137650302 + (TTAA)n Simple_repeat Simple_repeat 2 21 0 904 167 0 147 chr9 4621216 4621494 -137649950 + L1MC4 LINE L1 7819 7995 0 223 201 91 0 chr9 4623387 4623452 -137647992 + MIR SINE MIR 36 111 -97 309 353 10 0 chr9 4624313 4624415 -137647029 + MIR3 SINE MIR 85 187 -21 22 56 0 0 chr9 4625096 4625132 -137646312 + AT_rich Low_complexity Low_complexity 1 36 0 439 261 6 72 chr9 4625154 4625324 -137646120 - MIR SINE MIR -49 213 56 216 333 128 8 chr9 4626427 4626544 -137644900 + L2 LINE L2 3141 3271 -1 484 285 40 47 chr9 4626776 4627012 -137644432 + MIR SINE MIR 20 257 -5 192 77 0 0 chr9 4628336 4628362 -137643082 + (A)n Simple_repeat Simple_repeat 1 26 0 377 269 0 0 chr9 4629145 4629253 -137642191 + L1MC4a LINE L1 5809 5916 -1892 24 32 0 0 chr9 4630303 4630334 -137641110 + AT_rich Low_complexity Low_complexity 1 31 0 376 269 75 78 chr9 4631022 4631063 -137640381 + L1MDa LINE L1 1157 1197 -5343 905 207 12 0 chr9 4631063 4631227 -137640217 + FRAM SINE Alu 1 166 0 376 269 75 78 chr9 4631227 4631453 -137639991 + L1MDa LINE L1 1197 1423 -5117 230 259 147 42 chr9 4631523 4631666 -137639778 + L1MDa LINE L1 1490 1647 -4883 250 266 72 0 chr9 4631789 4631928 -137639516 + HAL1b LINE L1 437 1669 -785 1917 164 0 16 chr9 4632233 4632550 -137638894 + AluJo SINE Alu 1 312 0 243 297 72 9 chr9 4632618 4632729 -137638715 + MIR SINE MIR 65 182 -80 8877 124 21 9 chr9 4633479 4634913 -137636531 - Tigger1 DNA MER2_type -967 1451 1 220 231 0 0 chr9 4634935 4634974 -137636470 - MIR SINE MIR -146 116 78 2183 97 0 10 chr9 4635154 4635454 -137635990 + AluSc SINE Alu 1 297 -12 348 127 0 0 chr9 4636322 4636377 -137635067 + (A)n Simple_repeat Simple_repeat 1 55 0 274 190 69 0 chr9 4636815 4636873 -137634571 - L2 LINE L2 -2 3311 3250 480 270 103 88 chr9 4637159 4637615 -137633829 + L1ME4a LINE L1 5517 5979 -142 1806 23 0 0 chr9 4639079 4639296 -137632148 - L1PA4 LINE L1 -255 5900 5684 1430 6 12 6 chr9 4639298 4639467 -137631977 + L1PA4 LINE L1 5986 6155 0 2216 129 3 40 chr9 4640259 4640609 -137630835 - MER1B DNA MER1_type 0 337 1 952 57 0 0 chr9 4640884 4641006 -137630438 + L1PA13 LINE L1 6036 6157 -6 201 121 0 0 chr9 4641085 4641118 -137630326 + (TG)n Simple_repeat Simple_repeat 2 34 0 1021 160 41 78 chr9 4641466 4641759 -137629685 + L1MA4 LINE L1 6016 6297 -3 1901 161 0 22 chr9 4641804 4642121 -137629323 - AluSx SINE Alu -2 310 1 1028 162 80 51 chr9 4642782 4643096 -137628348 + MER33 DNA MER1_type 1 323 -1 243 146 0 0 chr9 4643517 4643558 -137627886 + (CA)n Simple_repeat Simple_repeat 2 42 0 245 243 122 27 chr9 4643723 4643797 -137627647 + L3b LINE CR1 1198 1278 -305 233 402 37 0 chr9 4643813 4643920 -137627524 + L3b LINE CR1 1412 1522 -61 2286 120 0 3 chr9 4644712 4645013 -137626431 - AluSq SINE Alu -13 300 1 730 101 34 0 chr9 4645812 4645931 -137625513 + L1MA5 LINE L1 6176 6298 -2 747 130 130 0 chr9 4646232 4646355 -137625089 + AluSg SINE Alu 1 139 -171 3352 170 89 60 chr9 4747346 4748325 -137523119 + MER51B-int LTR ERV1 6809 7815 -1 2085 109 112 3 chr9 4748327 4748667 -137522777 + MER51B LTR ERV1 1 377 0 563 133 0 0 chr9 4748667 4748750 -137522694 + U6 snRNA snRNA 19 101 -6 182 37 37 0 chr9 4748799 4748826 -137522618 + (TAAAAA)n Simple_repeat Simple_repeat 5 32 0 1027 38 25 19 chr9 4749326 4749484 -137521960 + (TTTC)n Simple_repeat Simple_repeat 2 160 0 996 130 0 7 chr9 4749585 4749731 -137521713 - AluSq/x SINE Alu -168 145 1 25 31 0 0 chr9 4750511 4750543 -137520901 + AT_rich Low_complexity Low_complexity 1 32 0 249 254 0 0 chr9 4750569 4750640 -137520804 + GA-rich Low_complexity Low_complexity 2 72 0 11324 164 53 59 chr9 4751957 4752590 -137518854 - L1 LINE L1 -1286 6279 5644 1386 117 5 33 chr9 4752590 4752803 -137518641 + AluSp SINE Alu 90 296 -17 11324 164 53 59 chr9 4752803 4753737 -137517707 - L1 LINE L1 -1921 5644 4706 2386 103 3 0 chr9 4753737 4754047 -137517397 - AluSp SINE Alu -1 312 2 11324 164 53 59 chr9 4754047 4757281 -137514163 - L1 LINE L1 -2859 4706 1280 1347 108 8 121 chr9 4757283 4757532 -137513912 + AluSg/x SINE Alu 84 304 -8 2005 88 4 0 chr9 4757638 4757888 -137513556 - AluSg SINE Alu -59 251 1 269 264 86 46 chr9 4758783 4758980 -137512464 - L1ME4a LINE L1 -211 5910 5706 212 359 83 28 chr9 4760162 4760307 -137511137 + MER5B DNA MER1_type 26 178 0 201 380 62 0 chr9 4760595 4760708 -137510736 - L2 LINE L2 -9 3263 3144 23 0 0 0 chr9 4761028 4761051 -137510393 + AT_rich Low_complexity Low_complexity 1 23 0 864 183 27 40 chr9 4761067 4761291 -137510153 - MER74B LTR ERVL -347 275 55 535 183 67 25 chr9 4761295 4761415 -137510029 - MER45 DNA AcHobo -914 126 2 338 330 65 25 chr9 4761772 4761972 -137509472 - L2 LINE L2 -498 2816 2609 2191 100 20 13 chr9 4762890 4763018 -137508426 + AluSc SINE Alu 1 127 -182 2302 106 0 6 chr9 4763018 4763330 -137508114 + AluSg SINE Alu 1 310 0 2191 100 20 13 chr9 4763330 4763502 -137507942 + AluSc SINE Alu 127 303 -6 475 152 13 0 chr9 4763606 4763685 -137507759 + MER33 DNA MER1_type 1 80 -244 216 309 30 19 chr9 4764065 4764214 -137507230 + GA-rich Low_complexity Low_complexity 3 243 0 324 0 0 0 chr9 4766220 4766256 -137505188 + (TG)n Simple_repeat Simple_repeat 2 37 0 2416 72 0 0 chr9 4766634 4766954 -137504490 + AluY SINE Alu 1 311 0 436 271 107 11 chr9 4767873 4768061 -137503383 - MIR SINE MIR -39 223 23 243 316 109 1 chr9 4768121 4768238 -137503206 + MIR SINE MIR 3 128 -80 339 237 21 63 chr9 4768435 4768580 -137502864 + MLT1K LTR MaLR 147 280 -335 1257 160 36 14 chr9 4768938 4769157 -137502287 - AluJo SINE Alu -3 309 86 13907 89 13 1 chr9 4769990 4772042 -137499402 - L1P LINE L1 -1423 4723 2646 395 198 79 141 chr9 4772329 4772556 -137498888 - MER102a DNA MER1_type -6 324 112 378 0 0 0 chr9 4772593 4772635 -137498809 + (CA)n Simple_repeat Simple_repeat 1 42 0 1532 157 16 12 chr9 4772829 4773084 -137498360 + AluJo SINE Alu 40 295 -17 3646 220 142 9 chr9 4773160 4774339 -137497105 - L1MC5 LINE L1 -28 8014 6699 375 260 7 89 chr9 4774355 4774501 -137496943 - L1MC4 LINE L1 -1438 6604 6471 381 284 149 0 chr9 4775178 4775319 -137496125 + MER5B DNA MER1_type 1 162 -16 3412 162 25 7 chr9 4775596 4776190 -137495254 - MER6A DNA MER2_type 0 605 1 246 235 0 0 chr9 4777657 4777708 -137493736 + CT-rich Low_complexity Low_complexity 2 52 0 241 330 28 0 chr9 4778328 4778437 -137493007 + GA-rich Low_complexity Low_complexity 3 114 0 1908 125 15 0 chr9 4778561 4778825 -137492619 + AluSx SINE Alu 1 268 -44 442 136 0 23 chr9 4778949 4779037 -137492407 + (TTCC)n Simple_repeat Simple_repeat 3 88 0 2679 45 0 0 chr9 4779332 4779643 -137491801 + AluYa5 SINE Alu 1 311 0 228 241 60 69 chr9 4779916 4780032 -137491412 + Charlie4 DNA MER1_type 1847 1961 0 1811 145 9 60 chr9 4780228 4780546 -137490898 + AluSx SINE Alu 1 302 -10 2153 109 33 0 chr9 4780585 4780887 -137490557 + AluSx SINE Alu 1 312 0 418 181 106 0 chr9 4780979 4781073 -137490371 + MER20 DNA MER1_type 24 127 -92 68 55 0 0 chr9 4782296 4782406 -137489038 + AT_rich Low_complexity Low_complexity 1 110 0 1631 198 63 25 chr9 4782831 4783226 -137488218 + L1MC4 LINE L1 7357 7766 -276 2012 73 0 33 chr9 4784329 4784604 -137486840 - AluY SINE Alu -45 266 1 2287 83 0 49 chr9 4785303 4785630 -137485814 + AluY SINE Alu 1 311 0 375 318 117 31 chr9 4785654 4785877 -137485567 + MIR SINE MIR 7 248 -14 218 342 94 8 chr9 4786111 4786228 -137485216 - MIR3 SINE MIR -51 157 31 190 310 40 60 chr9 4787299 4787399 -137484045 - MIR3 SINE MIR -22 186 89 31 0 0 0 chr9 4787843 4787874 -137483570 + AT_rich Low_complexity Low_complexity 1 31 0 509 93 58 0 chr9 4789530 4789616 -137481828 - MSTB1 LTR MaLR -341 91 1 487 261 30 37 chr9 4789667 4789801 -137481643 + MER5A DNA MER1_type 57 189 0 332 267 64 41 chr9 4790180 4790352 -137481092 + L1ME4a LINE L1 5574 5749 -372 1167 253 67 75 chr9 4790355 4790861 -137480583 - MLT1J LTR MaLR -7 504 3 331 226 209 43 chr9 4790900 4791134 -137480310 + L1ME4a LINE L1 5803 6075 -46 3686 98 7 19 chr9 4792275 4792746 -137478698 - L1PA15 LINE L1 -255 5910 5443 1826 148 3 14 chr9 4792746 4793049 -137478395 - AluJo SINE Alu 0 302 3 3686 98 7 19 chr9 4793049 4793114 -137478330 - L1PA15 LINE L1 -722 5443 5379 * 5310 172 23 14 chr9 4793112 4794250 -137477194 + L1P LINE L1 4252 5399 -765 1082 266 135 37 chr9 4794254 4794772 -137476672 - L2 LINE L2 -1652 1662 1094 1710 122 61 34 chr9 4795130 4795425 -137476019 + AluSg SINE Alu 1 303 -7 219 186 0 0 chr9 4796198 4796241 -137475203 + CT-rich Low_complexity Low_complexity 1 43 0 213 256 61 24 chr9 4796782 4796864 -137474580 + MER91C DNA MER1_type 24 108 -32 2808 159 39 4 chr9 4797809 4798300 -137473144 - L1MB3 LINE L1 -3 6180 5673 3167 88 16 7 chr9 4798307 4798730 -137472714 - L1PA11 LINE L1 -3 6171 5745 956 237 11 0 chr9 4798876 4799062 -137472382 - MER5A DNA MER1_type -1 188 1 444 172 0 94 chr9 4799148 4799340 -137472104 + (AGGTG)n Simple_repeat Simple_repeat 2 175 0 1433 224 118 7 chr9 4799670 4800086 -137471358 - MLT1C LTR MaLR 0 467 6 352 338 8 72 chr9 4800317 4800580 -137470864 - L2 LINE L2 -191 3081 2836 477 356 18 18 chr9 4800602 4800827 -137470617 - L3 LINE CR1 -287 1290 1066 2508 56 0 0 chr9 4801104 4801406 -137470038 + AluYa5 SINE Alu 1 302 -9 1731 110 16 0 chr9 4801406 4801651 -137469793 + L1MA2 LINE L1 6056 6304 0 22 35 0 0 chr9 4801651 4801680 -137469764 + AT_rich Low_complexity Low_complexity 1 29 0 1492 133 27 5 chr9 4801688 4801956 -137469488 + LTR24C LTR ERV1 316 635 0 1829 159 0 20 chr9 4802639 4802934 -137468510 - AluSx SINE Alu -23 289 1 185 0 40 0 chr9 4805199 4805224 -137466220 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 451 193 83 121 chr9 4805844 4806109 -137465335 + MER112 DNA MER1_type 1 255 -1 213 220 40 0 chr9 4806637 4806687 -137464757 + CT-rich Low_complexity Low_complexity 3 54 0 225 371 86 9 chr9 4807572 4807688 -137463756 + L2 LINE L2 3187 3311 -2 196 336 8 50 chr9 4808087 4808206 -137463238 + MIR SINE MIR 32 145 -63 2138 122 0 0 chr9 4809911 4810199 -137461245 + AluSx SINE Alu 1 288 -24 448 204 106 18 chr9 4810214 4810327 -137461117 + Charlie4 DNA MER1_type 1839 1961 0 1385 170 15 26 chr9 4810663 4810928 -137460516 + L1PA13 LINE L1 5891 6152 -11 189 0 0 0 chr9 4810928 4810949 -137460495 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 2121 129 0 0 chr9 4810970 4811265 -137460179 + AluSx SINE Alu 1 295 -17 194 269 108 9 chr9 4811503 4811619 -137459825 + MIR SINE MIR 9 138 -70 618 247 159 18 chr9 4811621 4811848 -137459596 - MIR SINE MIR -3 259 1 287 228 0 0 chr9 4812178 4812235 -137459209 + MLT1J2 LTR MaLR 394 450 0 227 215 15 31 chr9 4812389 4812454 -137458990 + MIR SINE MIR 168 231 -31 436 267 50 62 chr9 4813537 4813698 -137457746 + MIR SINE MIR 53 211 -51 2099 190 72 11 chr9 4813780 4814237 -137457207 + MER31A LTR ERV1 1 485 0 29 47 0 0 chr9 4814928 4814971 -137456473 + AT_rich Low_complexity Low_complexity 1 43 0 190 148 37 0 chr9 4815134 4815188 -137456256 + (TA)n Simple_repeat Simple_repeat 2 57 0 961 211 0 0 chr9 4815253 4815433 -137456011 + AluJb SINE Alu 131 310 -2 2536 179 79 20 chr9 4815434 4815966 -137455478 - Tigger6a DNA MER2_type -575 1022 450 1769 127 33 23 chr9 4815966 4816266 -137455178 - AluSg SINE Alu -7 303 1 2536 179 79 20 chr9 4816266 4816331 -137455113 - Tigger6a DNA MER2_type -1147 450 390 693 323 81 9 chr9 4816609 4816953 -137454491 - L1MC/D LINE L1 -1986 5822 5454 439 272 146 0 chr9 4817101 4817259 -137454185 - MER20B DNA MER1_type -602 181 1 1616 101 5 0 chr9 4817652 4817871 -137453573 + AluSg/x SINE Alu 83 302 -10 386 165 142 63 chr9 4818290 4818417 -137453027 - MER113 DNA MER1_type? -90 431 295 2293 129 122 38 chr9 4818429 4818660 -137452784 - MSTA LTR MaLR 0 428 218 2055 106 39 0 chr9 4818660 4818965 -137452479 + AluSx SINE Alu 1 312 0 2293 129 122 38 chr9 4818965 4819128 -137452316 - MSTA LTR MaLR -210 218 1 287 224 0 94 chr9 4819247 4819332 -137452112 - MER5B DNA MER1_type -99 79 3 281 221 163 0 chr9 4819744 4819830 -137451614 - MER113 DNA MER1_type? -127 394 295 373 167 15 0 chr9 4819843 4819909 -137451535 - MSTA LTR MaLR 0 428 362 180 0 0 0 chr9 4820338 4820358 -137451086 + (TAA)n Simple_repeat Simple_repeat 2 21 0 2166 132 0 16 chr9 4820358 4820669 -137450775 + AluSx SINE Alu 1 306 -6 445 260 253 4 chr9 4820934 4821215 -137450229 + L2 LINE L2 2303 2653 -661 284 279 13 0 chr9 4821216 4821295 -137450149 - MER116 DNA Mariner 0 80 1 628 310 48 85 chr9 4821300 4821913 -137449531 + L2 LINE L2 2660 3251 -21 338 304 152 23 chr9 4822013 4822184 -137449260 - MIR SINE MIR -50 212 20 243 0 0 0 chr9 4822190 4822217 -137449227 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 422 268 72 102 chr9 4822269 4822504 -137448940 - MER102b DNA MER1_type -11 330 103 763 276 30 42 chr9 4823487 4823686 -137447758 - MLT1J2 LTR MaLR 0 450 253 1383 175 0 43 chr9 4823686 4823724 -137447720 - MER58A DNA MER1_type -2196 224 186 2211 120 3 0 chr9 4823724 4824025 -137447419 + AluSq SINE Alu 1 302 -11 1383 175 0 43 chr9 4824025 4824220 -137447224 - MER58A DNA MER1_type -2234 186 1 763 276 30 42 chr9 4824220 4824285 -137447159 - MLT1J2 LTR MaLR -197 253 189 185 365 48 21 chr9 4824524 4824669 -137446775 - L2 LINE L2 -318 2954 2806 2073 132 0 22 chr9 4824790 4825108 -137446336 - AluSx SINE Alu 0 312 2 2077 157 0 0 chr9 4825311 4825623 -137445821 + AluSx SINE Alu 1 312 0 2234 103 0 3 chr9 4825976 4826277 -137445167 + AluSc SINE Alu 1 300 -9 322 295 156 64 chr9 4826398 4826693 -137444751 - L2 LINE L2 -17 3255 2934 189 171 0 0 chr9 4826744 4826779 -137444665 + (TGGA)n Simple_repeat Simple_repeat 3 37 0 2402 70 0 3 chr9 4827831 4828111 -137443333 + AluY SINE Alu 1 281 -30 286 51 0 0 chr9 4828111 4828150 -137443294 + (CAAAA)n Simple_repeat Simple_repeat 1 130 0 313 228 272 13 chr9 4828316 4828474 -137442970 + L1ME4a LINE L1 5670 5868 -253 2221 96 13 26 chr9 4828687 4829000 -137442444 + AluSq SINE Alu 1 309 -4 391 279 14 21 chr9 4829542 4829568 -137441876 - MIR SINE MIR -46 216 191 483 69 0 0 chr9 4829568 4829640 -137441804 + (TCTA)n Simple_repeat Simple_repeat 3 74 0 391 279 14 21 chr9 4829640 4829753 -137441691 - MIR SINE MIR -71 191 78 446 162 0 0 chr9 4829757 4829825 -137441619 + Tigger2 DNA MER2_type 2 69 -2649 * 2557 142 56 7 chr9 4829809 4830240 -137441204 + Tigger2 DNA MER2_type 2267 2718 0 182 271 0 0 chr9 4830260 4830308 -137441136 - MIR SINE MIR -208 54 7 2238 125 40 8 chr9 4830741 4831094 -137440350 + THE1B LTR MaLR 1 364 0 271 212 40 30 chr9 4831239 4831338 -137440106 - L1MEd LINE L1 -5029 1090 991 204 200 0 0 chr9 4831852 4831897 -137439547 + (CGG)n Simple_repeat Simple_repeat 2 46 0 1046 151 12 0 chr9 4833676 4833842 -137437602 + AluSg/x SINE Alu 140 307 -5 1986 131 17 10 chr9 4833854 4834151 -137437293 + AluJb SINE Alu 1 299 -13 537 219 62 23 chr9 4834960 4835088 -137436356 + FLAM_C SINE Alu 3 135 -8 324 293 138 22 chr9 4835496 4835721 -137435723 + MIR SINE MIR 6 256 -6 47 0 0 0 chr9 4835967 4836014 -137435430 + AT_rich Low_complexity Low_complexity 1 47 0 702 278 112 46 chr9 4836635 4836984 -137434460 - L2 LINE L2 0 3313 2942 345 361 67 13 chr9 4837217 4837516 -137433928 - L2 LINE L2 -923 2391 2077 816 181 0 0 chr9 4837724 4837857 -137433587 - FLAM_C SINE Alu 0 133 1 201 59 88 0 chr9 4837857 4837891 -137433553 + T-rich Low_complexity Low_complexity 2 38 0 1551 185 10 20 chr9 4837950 4838242 -137433202 + AluJo SINE Alu 1 289 -23 387 155 0 14 chr9 4838408 4838479 -137432965 - MLT1C LTR MaLR 0 467 398 689 169 245 0 chr9 4838500 4838684 -137432760 - MIR SINE MIR -26 236 8 202 319 121 45 chr9 4838680 4838837 -137432607 + L2 LINE L2 3096 3264 -8 * 25 31 0 0 chr9 4839996 4840028 -137431416 + AT_rich Low_complexity Low_complexity 1 32 0 205 182 0 0 chr9 4840146 4840179 -137431265 + (TATATG)n Simple_repeat Simple_repeat 4 36 0 515 97 84 0 chr9 4840233 4840387 -137431057 + (TA)n Simple_repeat Simple_repeat 1 167 0 2302 105 0 0 chr9 4840388 4840682 -137430762 - AluSx SINE Alu -18 294 1 1292 131 5 15 chr9 4841639 4841837 -137429607 - AluSg/x SINE Alu -5 305 110 2146 109 13 3 chr9 4842875 4843178 -137428266 + AluY SINE Alu 3 308 -3 2035 124 7 3 chr9 4843224 4843515 -137427929 + AluSx SINE Alu 3 294 -18 317 267 33 27 chr9 4843550 4843700 -137427744 + L1ME4a LINE L1 5719 5869 -252 708 174 16 0 chr9 4843786 4843907 -137427537 + FLAM_C SINE Alu 2 124 -19 924 125 0 22 chr9 4844044 4844180 -137427264 - AluSq/x SINE Alu -173 139 7 739 155 9 0 chr9 4844756 4844872 -137426572 - AluSg/x SINE Alu -9 301 185 2037 113 18 0 chr9 4845059 4845334 -137426110 + AluSx SINE Alu 1 280 -32 234 0 0 0 chr9 4845338 4845364 -137426080 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 252 0 0 0 chr9 4845372 4845400 -137426044 + (TG)n Simple_repeat Simple_repeat 2 29 0 464 284 123 89 chr9 4845459 4845910 -137425534 - L1ME4a LINE L1 -293 5828 5372 266 257 0 0 chr9 4845952 4846022 -137425422 - MIR SINE MIR -127 135 66 2295 105 0 10 chr9 4847294 4847598 -137423846 + AluSg SINE Alu 1 301 -9 447 301 15 0 chr9 4847605 4847741 -137423703 + MIR SINE MIR 15 152 -110 287 316 41 0 chr9 4847776 4847874 -137423570 + MIR SINE MIR 140 241 -21 683 177 53 0 chr9 4847971 4848084 -137423360 + LTR8 LTR ERV1 1 119 -572 1316 117 0 0 chr9 4848084 4848263 -137423181 - AluSg/x SINE Alu -2 308 130 2238 117 7 0 chr9 4848263 4848571 -137422873 - AluSx SINE Alu 0 312 3 1136 145 40 122 chr9 4848573 4848869 -137422575 + LTR8A LTR ERV1 119 390 -337 2140 117 0 0 chr9 4848888 4849171 -137422273 - AluSq SINE Alu -30 283 1 1242 198 84 62 chr9 4849171 4849540 -137421904 + LTR8A LTR ERV1 351 727 0 2168 99 3 20 chr9 4849576 4849878 -137421566 - AluSq SINE Alu -16 297 1 21 89 0 0 chr9 4849902 4849958 -137421486 + AT_rich Low_complexity Low_complexity 1 56 0 2858 123 186 6 chr9 4850021 4850548 -137420896 + LTR29 LTR ERV1 1 622 0 1616 165 0 29 chr9 4850581 4850854 -137420590 - AluJo SINE Alu -47 265 1 957 64 0 0 chr9 4850938 4851048 -137420396 - AluSq SINE Alu -95 218 109 735 316 0 0 chr9 4851185 4851394 -137420050 - MIR SINE MIR -26 236 28 1530 173 0 26 chr9 4851545 4851811 -137419633 - AluJo SINE Alu -16 296 38 808 243 18 101 chr9 4852620 4852787 -137418657 + L2 LINE L2 1858 1985 -1329 1592 153 0 130 chr9 4852787 4853134 -137418310 - AluJb SINE Alu -10 302 1 808 243 18 101 chr9 4853134 4853303 -137418141 + L2 LINE L2 1985 2166 -1148 1451 269 112 11 chr9 4853303 4853825 -137417619 + L2 LINE L2 2449 2917 -396 2046 106 0 35 chr9 4853825 4854108 -137417336 - AluSg SINE Alu -37 273 1 1451 269 112 11 chr9 4854108 4854143 -137417301 + L2 LINE L2 2917 2947 -366 183 80 0 0 chr9 4854143 4854168 -137417276 + (CACCAT)n Simple_repeat Simple_repeat 3 27 0 1451 269 112 11 chr9 4854168 4854383 -137417061 + L2 LINE L2 2947 3313 0 2341 100 0 13 chr9 4854750 4855050 -137416394 - AluSc SINE Alu -13 296 1 1811 176 7 0 chr9 4855243 4855533 -137415911 - AluJo SINE Alu -18 294 3 3144 285 65 0 chr9 4855535 4856181 -137415263 + Tigger1 DNA MER2_type 44 731 -1687 2242 143 45 31 chr9 4856175 4856482 -137414962 + Tigger1 DNA MER2_type 1993 2309 -109 * 1967 145 21 3 chr9 4856482 4856772 -137414672 - AluSx SINE Alu -17 295 1 2242 143 45 31 chr9 4856772 4856883 -137414561 + Tigger1 DNA MER2_type 2309 2417 -1 238 321 37 83 chr9 4857050 4857159 -137414285 - MIR SINE MIR -89 119 16 7864 169 13 26 chr9 4857973 4859395 -137412049 - L1P LINE L1 -4732 1414 11 565 309 40 15 chr9 4859511 4859712 -137411732 - MLT1I LTR MaLR -203 206 1 673 243 0 0 chr9 4860197 4860333 -137411111 + FLAM_C SINE Alu 2 137 -6 11886 84 10 9 chr9 4860588 4863681 -137407763 + L1PA6 LINE L1 1635 5401 -745 3486 43 2 0 chr9 4863681 4864096 -137407348 + L1PA6 LINE L1 5730 6146 -8 10648 168 42 11 chr9 4864336 4864826 -137406618 + L1MA6 LINE L1 3197 3670 -2476 1815 162 7 13 chr9 4864826 4865135 -137406309 + AluJb SINE Alu 1 307 -5 10648 168 42 11 chr9 4865135 4866745 -137404699 + L1MA6 LINE L1 3670 5363 -783 1532 195 6 38 chr9 4866748 4867061 -137404383 + AluJb SINE Alu 1 303 -9 645 183 37 43 chr9 4867063 4867227 -137404217 + L1MA6 LINE L1 5906 6068 -232 746 162 58 104 chr9 4867227 4867486 -137403958 + L1MB8 LINE L1 5931 6177 -1 314 240 82 16 chr9 4867667 4867850 -137403594 - L1M4 LINE L1 -1786 4360 4166 * 40396 74 9 2 chr9 4867829 4873937 -137397507 - L1PA6 LINE L1 -2 6152 1 2389 235 37 7 chr9 4873948 4874620 -137396824 - L1M4 LINE L1 -2294 3852 3161 21 57 0 0 chr9 4874820 4874855 -137396589 + AT_rich Low_complexity Low_complexity 1 35 0 1138 86 0 7 chr9 4874855 4875007 -137396437 - L1MA1 LINE L1 -4 6298 6148 2069 141 0 3 chr9 4875017 4875330 -137396114 - AluSx SINE Alu 0 312 1 270 270 51 7 chr9 4875759 4875896 -137395548 + MER113 DNA MER1_type? 1 143 -378 2222 125 0 6 chr9 4875901 4876212 -137395232 + AluSx SINE Alu 1 309 -3 31 26 0 0 chr9 4876212 4876250 -137395194 + AT_rich Low_complexity Low_complexity 1 38 0 671 231 21 0 chr9 4876604 4876747 -137394697 + MER58B DNA MER1_type 181 326 -15 1520 199 11 11 chr9 4876866 4877147 -137394297 + AluJo SINE Alu 1 281 -31 395 250 75 19 chr9 4878765 4878925 -137392519 - L1MC5 LINE L1 -184 7777 7609 202 315 130 0 chr9 4879079 4879187 -137392257 + MIR SINE MIR 17 138 -70 692 281 59 64 chr9 4879578 4880034 -137391410 - L1ME4a LINE L1 -178 5943 5490 344 114 0 0 chr9 4880364 4880408 -137391036 + MER72 LTR ERV1 585 628 -94 864 172 0 0 chr9 4880760 4880882 -137390562 + FLAM_C SINE Alu 1 122 -11 746 276 16 79 chr9 4880936 4881240 -137390204 - MER102a DNA MER1_type -18 312 28 20138 39 10 2 chr9 4881790 4884510 -137386934 + L1P2 LINE L1 2915 5658 -497 260 290 220 5 chr9 4885846 4886032 -137385412 + L2 LINE L2 2921 3146 -167 2118 218 55 0 chr9 4886390 4886859 -137384585 - Charlie4a DNA MER1_type 0 508 14 217 233 178 0 chr9 4886911 4886984 -137384460 + L2 LINE L2 3227 3312 -1 498 116 0 0 chr9 4887963 4888032 -137383412 + MSTA LTR MaLR 360 428 0 281 221 163 0 chr9 4888045 4888131 -137383313 + MER113 DNA MER1_type? 295 394 -127 230 271 0 94 chr9 4888542 4888627 -137382817 + MER5B DNA MER1_type 3 79 -99 1338 247 36 11 chr9 4888785 4889141 -137382303 + L1ME1 LINE L1 5778 6142 -24 180 111 0 0 chr9 4889597 4889624 -137381820 + (TTGGGG)n Simple_repeat Simple_repeat 6 32 0 350 384 21 11 chr9 4889654 4889844 -137381600 - L2 LINE L2 -557 2757 2566 216 67 0 0 chr9 4889856 4889886 -137381558 + (CATTA)n Simple_repeat Simple_repeat 3 32 0 214 29 57 0 chr9 4889970 4890005 -137381439 + (TC)n Simple_repeat Simple_repeat 1 37 0 997 280 22 19 chr9 4890050 4890318 -137381126 - MLT1H1 LTR MaLR -284 271 3 224 298 162 10 chr9 4890398 4890596 -137380848 - L2 LINE L2 -993 2321 2094 247 258 16 0 chr9 4891963 4892025 -137379419 + MIR SINE MIR 77 139 -123 638 269 60 96 chr9 4892325 4892772 -137378672 - MLT1K LTR MaLR -2 586 156 2375 159 3 3 chr9 4893086 4893451 -137377993 - MLT1A1 LTR MaLR 0 365 1 306 0 0 0 chr9 4893500 4893534 -137377910 + (CA)n Simple_repeat Simple_repeat 2 35 0 2756 208 52 67 chr9 4893543 4894164 -137377280 + L1MC/D LINE L1 4019 4647 -1499 1946 146 20 3 chr9 4894164 4894466 -137376978 + AluJb SINE Alu 1 307 -5 2756 208 52 67 chr9 4894466 4894597 -137376847 + L1MC/D LINE L1 4647 4796 -1350 310 28 0 0 chr9 4894597 4894633 -137376811 - MADE1 DNA Mariner -44 36 1 2756 208 52 67 chr9 4894633 4894684 -137376760 + L1MC/D LINE L1 4796 4846 -1300 906 198 0 18 chr9 4894695 4894862 -137376582 - FRAM SINE Alu -12 164 1 2064 175 53 20 chr9 4894866 4895532 -137375912 + L1MC/D LINE L1 4849 5542 -744 2038 158 0 0 chr9 4895921 4896231 -137375213 + AluJb SINE Alu 1 310 -2 403 259 229 15 chr9 4896316 4896521 -137374923 - MIR SINE MIR -2 260 12 541 259 56 0 chr9 4896974 4897117 -137374327 - MER117 DNA MER1_type -35 162 12 2344 104 0 7 chr9 4898858 4899165 -137372279 - AluSx SINE Alu -7 305 1 1943 119 0 63 chr9 4899457 4899640 -137371804 - AluSx SINE Alu 0 316 160 1969 113 7 7 chr9 4899640 4899922 -137371522 - AluSx SINE Alu -10 302 21 1943 119 0 63 chr9 4899922 4900073 -137371371 - AluSx SINE Alu -156 160 1 2132 112 0 13 chr9 4900766 4901069 -137370375 + AluY SINE Alu 1 299 -12 561 304 52 87 chr9 4902665 4903092 -137368352 - L2 LINE L2 -27 3245 2834 1013 266 135 17 chr9 4903092 4903558 -137367886 - LTR33 LTR ERVL 0 521 1 1429 156 0 0 chr9 4903658 4903869 -137367575 - AluSg/x SINE Alu -20 290 80 1580 130 0 0 chr9 4903971 4904187 -137367257 - AluSx SINE Alu -96 216 1 264 257 14 14 chr9 4904368 4904442 -137367002 + L2 LINE L2 3195 3268 -4 224 282 15 84 chr9 4904678 4904809 -137366635 - L2 LINE L2 0 3272 3151 933 288 16 0 chr9 4904865 4905108 -137366336 - MIR SINE MIR -15 247 1 230 335 57 67 chr9 4905179 4905388 -137366056 - L2 LINE L2 -214 3058 2852 1230 239 38 35 chr9 4906476 4906844 -137364600 - MLT1J LTR MaLR 0 511 143 1581 164 36 22 chr9 4906903 4907178 -137364266 + AluJb SINE Alu 1 279 -33 288 211 14 0 chr9 4907282 4907353 -137364091 + L1MB3 LINE L1 4744 4815 -1331 565 185 0 11 chr9 4907353 4907445 -137363999 + AluJb SINE Alu 41 131 -181 709 252 99 10 chr9 4907445 4907741 -137363703 + L1MB3 LINE L1 4761 5093 -1053 1182 179 0 23 chr9 4907787 4908005 -137363439 - AluJb SINE Alu -13 299 87 976 177 0 11 chr9 4908076 4908257 -137363187 - AluSg/x SINE Alu -5 305 127 292 261 46 50 chr9 4908314 4908467 -137362977 + L1MB3 LINE L1 5257 5412 -753 708 212 54 163 chr9 4908532 4909004 -137362440 + L1MC4a LINE L1 5692 6101 -1707 848 157 0 30 chr9 4909004 4909138 -137362306 - FLAM_C SINE Alu -3 130 1 708 212 54 163 chr9 4909138 4909198 -137362246 + L1MC4a LINE L1 6101 6166 -1642 2318 108 0 0 chr9 4909444 4909751 -137361693 - AluSq SINE Alu -6 307 1 3455 128 67 92 chr9 4909944 4910512 -137360932 + L1MB3 LINE L1 5450 5996 -187 1943 148 3 3 chr9 4910512 4910803 -137360641 - AluJb SINE Alu -21 291 1 3455 128 67 92 chr9 4910803 4910985 -137360459 + L1MB3 LINE L1 5996 6181 -2 1572 227 108 83 chr9 4910985 4911421 -137360023 + L1MC5 LINE L1 6560 6984 -977 1936 112 21 17 chr9 4911421 4911708 -137359736 + AluSx SINE Alu 7 294 -18 1572 227 108 83 chr9 4911708 4912125 -137359319 + L1MC5 LINE L1 6984 7443 -518 27 0 0 0 chr9 4912137 4912164 -137359280 + AT_rich Low_complexity Low_complexity 1 27 0 383 147 0 29 chr9 4912178 4912246 -137359198 - AluJb SINE Alu -167 135 70 710 181 95 0 chr9 4912793 4912909 -137358535 + FLAM_C SINE Alu 3 129 -14 241 261 15 0 chr9 4912962 4913027 -137358417 + (TTCA)n Simple_repeat Simple_repeat 4 69 0 183 292 0 97 chr9 4913221 4913293 -137358151 - L2 LINE L2 -332 2940 2876 205 348 22 0 chr9 4913323 4913415 -137358029 - L2 LINE L2 -484 2830 2737 2354 76 0 13 chr9 4914012 4914315 -137357129 - AluY SINE Alu -8 303 5 2756 186 117 41 chr9 4915201 4915809 -137355635 - MLT1E1 LTR MaLR 0 654 1 764 138 9 0 chr9 4916476 4916585 -137354859 - FLAM_C SINE Alu -11 132 23 262 290 54 21 chr9 4916590 4916776 -137354668 - L1MEd LINE L1 -3107 3022 2831 338 288 72 16 chr9 4916789 4917039 -137354405 - L1MEd LINE L1 -5043 1076 813 257 341 58 45 chr9 4917236 4917547 -137353897 - L1MEd LINE L1 -5555 564 250 1663 178 31 0 chr9 4917576 4917869 -137353575 + MSTB2 LTR MaLR 7 308 -149 30 27 0 0 chr9 4917874 4917911 -137353533 + AT_rich Low_complexity Low_complexity 1 37 0 1129 149 0 0 chr9 4917930 4918098 -137353346 + MSTB2 LTR MaLR 290 457 0 778 210 32 68 chr9 4918689 4918908 -137352536 + MIR SINE MIR 52 262 0 237 217 142 75 chr9 4919315 4919435 -137352009 - L2 LINE L2 -8 3305 3178 2349 131 16 31 chr9 4919686 4920067 -137351377 + THE1C LTR MaLR 1 375 0 247 241 17 0 chr9 4920199 4920257 -137351187 - MER5A DNA MER1_type -3 186 128 2520 78 0 0 chr9 4920259 4920567 -137350877 + AluY SINE Alu 1 308 -3 21 0 0 0 chr9 4921359 4921380 -137350064 + AT_rich Low_complexity Low_complexity 1 21 0 3755 170 20 27 chr9 4921395 4922162 -137349282 + L1MB7 LINE L1 5202 5969 -215 731 300 18 0 chr9 4922818 4923038 -137348406 + MIR SINE MIR 36 259 -3 1029 193 0 0 chr9 4924079 4924245 -137347199 + FRAM SINE Alu 1 166 0 2244 104 3 25 chr9 4924347 4924664 -137346780 - AluSx SINE Alu -2 310 1 515 179 36 0 chr9 4925155 4925267 -137346177 - L1 LINE L1 -2824 3322 3207 29 47 0 0 chr9 4925555 4925598 -137345846 + AT_rich Low_complexity Low_complexity 1 43 0 207 179 0 0 chr9 4926274 4926313 -137345131 + (TGAA)n Simple_repeat Simple_repeat 1 39 0 201 281 53 61 chr9 4928024 4928138 -137343306 + MIR SINE MIR 99 211 -51 305 326 28 14 chr9 4928167 4928220 -137343224 - MIR3 SINE MIR -5 203 152 1901 164 0 22 chr9 4928220 4928538 -137342906 + AluJo SINE Alu 1 311 -1 305 326 28 14 chr9 4928538 4928628 -137342816 - MIR3 SINE MIR -56 152 58 699 295 52 33 chr9 4928728 4928999 -137342445 - Charlie8 DNA MER1_type -2141 276 1 1730 220 37 8 chr9 4929008 4929363 -137342081 + MLT1A1 LTR MaLR 1 365 0 2115 121 13 16 chr9 4929380 4929686 -137341758 - AluSx SINE Alu -7 305 1 190 379 38 15 chr9 4929686 4929818 -137341626 + L2 LINE L2 2776 2910 -404 1785 166 3 24 chr9 4929926 4930222 -137341222 - AluJo SINE Alu -19 293 4 1596 165 113 130 chr9 4930754 4931401 -137340043 + LTR1B LTR ERV1 110 745 -81 187 184 53 0 chr9 4931562 4931600 -137339844 - MIR SINE MIR -63 145 106 3675 112 112 0 chr9 4931922 4932493 -137338951 - LTR24C LTR ERV1 0 635 1 200 275 0 0 chr9 4932884 4932924 -137338520 + polypurine Low_complexity Low_complexity 4 43 0 183 80 0 0 chr9 4932930 4932955 -137338489 + (GGAA)n Simple_repeat Simple_repeat 4 28 0 21 0 0 0 chr9 4933494 4933515 -137337929 + AT_rich Low_complexity Low_complexity 1 21 0 1813 156 14 3 chr9 4934634 4934929 -137336515 + AluJb SINE Alu 1 298 -14 44768 41 0 1 chr9 4936154 4942314 -137329130 + L1PA3 LINE L1 2 6155 0 25 0 0 0 chr9 4942328 4942353 -137329091 + AT_rich Low_complexity Low_complexity 1 25 0 738 263 40 11 chr9 4942381 4942556 -137328888 - AluJo SINE Alu -47 265 86 1287 192 5 0 chr9 4942556 4942775 -137328669 - AluJo SINE Alu -92 220 1 276 320 50 50 chr9 4942868 4943068 -137328376 + L2 LINE L2 2885 3084 -188 306 106 0 0 chr9 4943270 4943317 -137328127 + (TTCA)n Simple_repeat Simple_repeat 3 49 0 1969 152 7 7 chr9 4943451 4943761 -137327683 + AluSx SINE Alu 1 310 -2 1937 147 3 0 chr9 4944096 4944388 -137327056 - AluSx SINE Alu -19 293 1 482 237 21 0 chr9 4945140 4945237 -137326207 + MER81 DNA DNA 2 100 -14 22 0 0 0 chr9 4945770 4945792 -137325652 + AT_rich Low_complexity Low_complexity 1 22 0 180 255 21 0 chr9 4946006 4946053 -137325391 + L2 LINE L2 3225 3272 0 224 179 30 60 chr9 4946435 4946502 -137324942 - MIR SINE MIR -94 168 104 1217 124 36 26 chr9 4946502 4946695 -137324749 + AluJo SINE Alu 1 195 -117 222 361 0 0 chr9 4946995 4947067 -137324377 - L2 LINE L2 -445 2869 2798 750 120 0 0 chr9 4947548 4947648 -137323796 - AluSg/x SINE Alu -26 284 185 570 318 0 6 chr9 4948036 4948215 -137323229 + (CA)n Simple_repeat Simple_repeat 2 179 0 458 316 0 6 chr9 4948248 4948608 -137322836 + (CA)n Simple_repeat Simple_repeat 1 357 0 417 363 0 6 chr9 4948690 4948869 -137322575 + (CA)n Simple_repeat Simple_repeat 2 179 0 8562 48 1 2 chr9 4949253 4950949 -137320495 + L1PA3 LINE L1 4315 6007 -148 2087 115 0 3 chr9 4951246 4951555 -137319889 + AluSq SINE Alu 1 308 0 404 250 24 40 chr9 4951671 4951795 -137319649 + L2 LINE L2 3151 3272 0 301 291 13 0 chr9 4951825 4951904 -137319540 - MIR3 SINE MIR -20 188 109 229 288 41 27 chr9 4951974 4952047 -137319397 - L2 LINE L2 -1 3312 3239 806 303 73 23 chr9 4952241 4952866 -137318578 - L2 LINE L2 -60 3253 2590 705 250 66 0 chr9 4953294 4953506 -137317938 - MER20B DNA MER1_type 0 783 558 1084 214 140 84 chr9 4953522 4953915 -137317529 - MER20B DNA MER1_type -366 417 3 216 336 136 18 chr9 4953969 4954079 -137317365 + L2 LINE L2 3145 3267 -5 21 0 0 0 chr9 4955850 4955871 -137315573 + AT_rich Low_complexity Low_complexity 1 21 0 2336 94 0 3 chr9 4957148 4957447 -137313997 - AluSx SINE Alu -14 298 1 1292 125 100 0 chr9 4957526 4957726 -137313718 + AluSg/x SINE Alu 84 303 -7 608 332 16 24 chr9 4957727 4957980 -137313464 - MIR SINE MIR -5 257 7 23 0 0 0 chr9 4958441 4958464 -137312980 + AT_rich Low_complexity Low_complexity 1 23 0 820 231 95 18 chr9 4958777 4958998 -137312446 + MIR SINE MIR 9 246 -16 180 349 35 35 chr9 4959349 4959435 -137312009 + MIR SINE MIR 45 130 -78 1772 240 41 7 chr9 4959465 4959878 -137311566 - L1ME1 LINE L1 -25 6141 5715 286 155 42 70 chr9 4959880 4959951 -137311493 + MIR SINE MIR 120 188 -74 402 115 0 0 chr9 4959962 4960023 -137311421 + (TA)n Simple_repeat Simple_repeat 2 62 0 606 258 145 14 chr9 4960241 4960462 -137310982 + MIR SINE MIR 13 262 0 24 0 0 0 chr9 4961021 4961045 -137310399 + AT_rich Low_complexity Low_complexity 1 24 0 1729 127 0 4 chr9 4961059 4961318 -137310126 + AluSx SINE Alu 34 291 -21 30 27 0 0 chr9 4961323 4961360 -137310084 + AT_rich Low_complexity Low_complexity 1 37 0 4123 100 32 12 chr9 4961364 4961965 -137309479 - L1MA3 LINE L1 -1 6304 5692 496 156 13 0 chr9 4962610 4962687 -137308757 - AluJ/FLAM SINE Alu -228 84 7 621 235 136 60 chr9 4962696 4963049 -137308395 - L1ME4a LINE L1 0 6121 5742 1282 223 143 61 chr9 4963054 4963777 -137307667 - LTR50 LTR ERVL 0 795 14 257 150 0 0 chr9 4963849 4963889 -137307555 - L1ME4a LINE L1 -459 5662 5623 2397 85 0 0 chr9 4965024 4965319 -137306125 - AluSx SINE Alu -9 303 9 425 222 163 0 chr9 4965355 4965490 -137305954 + L1ME4a LINE L1 5964 6120 -1 1656 196 3 7 chr9 4965918 4966219 -137305225 + AluJb SINE Alu 1 300 -12 22 0 0 0 chr9 4966219 4966241 -137305203 + AT_rich Low_complexity Low_complexity 1 22 0 884 231 100 9 chr9 4966519 4966748 -137304696 - MIR SINE MIR -12 250 1 1581 209 3 0 chr9 4966847 4967134 -137304310 - AluJo SINE Alu -20 292 5 2239 117 3 0 chr9 4967349 4967647 -137303797 + AluSg SINE Alu 1 299 -11 838 182 69 19 chr9 4967953 4968112 -137303332 - AluJo SINE Alu -24 288 122 1460 194 3 26 chr9 4968251 4968555 -137302889 - AluJo SINE Alu -15 297 1 2103 99 18 7 chr9 4968562 4968844 -137302600 - AluSx SINE Alu -27 285 1 762 179 0 30 chr9 4969126 4969260 -137302184 + FLAM_C SINE Alu 2 131 -2 22 0 0 0 chr9 4970469 4970491 -137300953 + AT_rich Low_complexity Low_complexity 1 22 0 339 293 75 45 chr9 4970905 4971038 -137300406 - L2 LINE L2 0 3272 3136 367 231 95 27 chr9 4971039 4971186 -137300258 + L1ME4a LINE L1 5713 5869 -252 514 269 99 13 chr9 4971258 4971444 -137300000 + L1ME4a LINE L1 5443 5657 -505 679 213 28 0 chr9 4971447 4971588 -137299856 + Charlie1 DNA MER1_type 5 149 -2612 * 1365 141 71 24 chr9 4971583 4971880 -137299564 + Charlie1 DNA MER1_type 2420 2730 -31 1137 154 135 5 chr9 4971986 4972194 -137299250 + MER46A DNA MER2_type 2 236 0 292 258 54 21 chr9 4972617 4972710 -137298734 + L1ME4a LINE L1 5956 6051 -70 33 25 0 0 chr9 4972733 4972773 -137298671 + AT_rich Low_complexity Low_complexity 1 40 0 1899 159 28 0 chr9 4972922 4973211 -137298233 - AluJo SINE Alu -15 297 1 622 244 73 6 chr9 4973429 4973593 -137297851 - MIR SINE MIR -3 259 85 410 206 20 0 chr9 4973879 4973981 -137297463 + CT-rich Low_complexity Low_complexity 1 104 0 2118 144 0 3 chr9 4974003 4974315 -137297129 - AluJo SINE Alu -1 311 1 1648 179 16 52 chr9 4974766 4975055 -137296389 - MER4D LTR ERV1 0 903 628 1890 174 26 0 chr9 4975055 4975359 -137296085 + AluJo SINE Alu 1 312 0 1648 179 16 52 chr9 4975359 4975432 -137296012 - MER4D LTR ERV1 -275 628 554 1781 147 35 7 chr9 4975452 4975738 -137295706 - MER49 LTR ERV1 -629 294 1 421 324 7 7 chr9 4975824 4975966 -137295478 + MIR SINE MIR 61 202 -60 1942 181 86 49 chr9 4975966 4976452 -137294992 - LTR54 LTR ERV1 0 510 7 263 333 79 8 chr9 4976726 4976852 -137294592 + MIR SINE MIR 48 182 -80 1305 189 58 0 chr9 4977353 4977635 -137293809 - AluJo SINE Alu 0 306 10 1179 233 78 33 chr9 4977636 4978076 -137293368 + LTR56 LTR ERV1 8 610 0 227 77 0 26 chr9 4978094 4978133 -137293311 + (GAAAA)n Simple_repeat Simple_repeat 4 41 0 2298 69 24 3 chr9 4978155 4978445 -137292999 + AluSq SINE Alu 1 296 -17 1774 104 150 0 chr9 4978826 4979086 -137292358 - AluSx SINE Alu -2 300 2 182 196 62 93 chr9 4979112 4979209 -137292235 - MIR SINE MIR -70 192 99 1520 95 60 0 chr9 4979655 4979887 -137291557 - L1MA8 LINE L1 -4 6287 6042 1100 124 12 6 chr9 4979934 4980103 -137291341 - AluSg/x SINE Alu -16 294 125 192 324 0 15 chr9 4980205 4980273 -137291171 + L2 LINE L2 2673 2739 -575 2343 102 0 6 chr9 4980330 4980644 -137290800 - AluSx SINE Alu 0 312 1 343 351 38 15 chr9 4980974 4981105 -137290339 + MER5A DNA MER1_type 8 141 -48 1591 176 0 25 chr9 4981114 4981393 -137290051 + AluJb SINE Alu 1 272 -40 2081 108 0 0 chr9 4981547 4981826 -137289618 + AluY SINE Alu 1 279 -32 317 130 0 87 chr9 4983170 4983239 -137288205 + L1MC4 LINE L1 6471 6533 -1509 1230 172 102 19 chr9 4983239 4983495 -137287949 + AluJo SINE Alu 17 293 -19 495 261 41 60 chr9 4983496 4983714 -137287730 + L1MC4 LINE L1 6534 6747 -1295 24 0 0 0 chr9 4983726 4983750 -137287694 + AT_rich Low_complexity Low_complexity 1 24 0 1761 114 0 0 chr9 4983762 4983989 -137287455 + AluSg SINE Alu 1 227 -83 509 311 0 7 chr9 4984145 4984293 -137287151 + (CA)n Simple_repeat Simple_repeat 1 147 0 455 295 1 0 chr9 4984312 4985228 -137286216 + (CA)n Simple_repeat Simple_repeat 1 917 0 372 294 0 0 chr9 4985260 4985678 -137285766 + (CA)n Simple_repeat Simple_repeat 1 418 0 2269 110 7 0 chr9 4986375 4986683 -137284761 + AluSx SINE Alu 1 310 -2 1757 173 7 19 chr9 4986831 4987138 -137284306 - AluJb SINE Alu -9 303 1 849 232 170 26 chr9 4987237 4987639 -137283805 + MLT1K LTR MaLR 20 551 -37 438 296 46 15 chr9 4987793 4987989 -137283455 - MIR SINE MIR 0 262 61 1615 177 23 23 chr9 4988090 4988389 -137283055 + AluJo SINE Alu 1 299 -13 502 223 234 5 chr9 4988451 4988648 -137282796 - MIR SINE MIR 0 262 21 1840 173 127 0 chr9 4989002 4989325 -137282119 + MER47A DNA MER2_type 3 366 0 339 248 19 38 chr9 4989669 4989774 -137281670 + MLT1K LTR MaLR 459 561 -27 201 179 26 0 chr9 4990758 4990797 -137280647 + GA-rich Low_complexity Low_complexity 2 41 0 756 239 68 27 chr9 4990916 4991179 -137280265 + MLT2D LTR ERVL 1 274 -140 1994 112 20 7 chr9 4991228 4991523 -137279921 + AluSx SINE Alu 1 299 -13 2003 131 3 20 chr9 4991846 4992151 -137279293 + AluJo SINE Alu 1 300 -12 2078 128 21 0 chr9 4992571 4992861 -137278583 + AluSq SINE Alu 2 297 -16 1674 107 149 0 chr9 4993239 4993501 -137277943 - AluSx SINE Alu 0 302 2 1459 95 60 0 chr9 4994070 4994302 -137277142 - L1MA8 LINE L1 -4 6287 6042 1130 120 13 0 chr9 4994349 4994507 -137276937 - AluSg/x SINE Alu -16 294 135 2327 103 0 6 chr9 4994745 4995057 -137276387 - AluSx SINE Alu -2 310 1 325 344 38 15 chr9 4995387 4995518 -137275926 + MER5A DNA MER1_type 8 141 -48 1562 179 0 25 chr9 4995527 4995806 -137275638 + AluJb SINE Alu 1 272 -40 2081 108 0 0 chr9 4995960 4996239 -137275205 + AluY SINE Alu 1 279 -32 317 130 0 87 chr9 4997583 4997652 -137273792 + L1MC4 LINE L1 6471 6533 -1509 1213 176 102 19 chr9 4997652 4997908 -137273536 + AluJo SINE Alu 17 293 -19 495 261 41 60 chr9 4997909 4998127 -137273317 + L1MC4 LINE L1 6534 6747 -1295 24 0 0 0 chr9 4998139 4998163 -137273281 + AT_rich Low_complexity Low_complexity 1 24 0 2215 118 0 13 chr9 4998175 4998489 -137272955 + AluSg SINE Alu 1 310 0 306 347 0 0 chr9 4998585 4998683 -137272761 + L1MC/D LINE L1 5465 5562 -2246 369 109 0 0 chr9 4998687 4998742 -137272702 + MLT2B1 LTR ERVL 1 55 -465 1335 143 0 46 chr9 4998748 4998965 -137272479 + AluJb SINE Alu 1 207 -105 1913 162 0 20 chr9 4999320 4999623 -137271821 + AluSq SINE Alu 1 297 -16 2520 184 89 7 chr9 4999735 5000310 -137271134 - L1MB7 LINE L1 -76 6108 5487 1830 131 3 91 chr9 5000310 5000639 -137270805 - AluSx SINE Alu -12 300 1 5732 178 47 6 chr9 5000656 5001686 -137269758 + L1MA2 LINE L1 5 1076 -6489 315 203 0 0 chr9 5001702 5001771 -137269673 + T-rich Low_complexity Low_complexity 1 69 0 5937 174 30 85 chr9 5002538 5003390 -137268054 + L1MA2 LINE L1 1081 1978 -5745 2342 101 14 0 chr9 5003390 5003686 -137267758 - AluSx SINE Alu -12 300 1 5937 174 30 85 chr9 5003686 5004064 -137267380 + L1MA2 LINE L1 1978 2375 -5348 2282 114 0 3 chr9 5004064 5004371 -137267073 - AluSx SINE Alu -6 306 1 5937 174 30 85 chr9 5004371 5005666 -137265778 + L1MA2 LINE L1 2375 3739 -3984 2794 73 0 8 chr9 5005666 5006035 -137265409 + L1PA8 LINE L1 5807 6172 0 5937 174 30 85 chr9 5006035 5006417 -137265027 + L1MA2 LINE L1 3739 4140 -3583 2627 90 0 37 chr9 5006417 5006722 -137264722 + THE1B LTR MaLR 1 291 -73 2235 119 0 0 chr9 5006722 5007025 -137264419 - AluSg SINE Alu -7 303 1 2627 90 0 37 chr9 5007025 5007097 -137264347 + THE1B LTR MaLR 291 364 0 5937 174 30 85 chr9 5007097 5008699 -137262745 + L1MA2 LINE L1 4140 5828 -1895 1712 158 92 0 chr9 5008699 5008971 -137262473 - AluSx SINE Alu -15 297 1 5937 174 30 85 chr9 5008971 5009127 -137262317 + L1MA2 LINE L1 5828 5991 -1732 1653 151 45 34 chr9 5009127 5009418 -137262026 + AluJb SINE Alu 11 304 -8 5937 174 30 85 chr9 5009418 5010026 -137261418 + L1MA2 LINE L1 5991 6631 -1092 1311 140 0 0 chr9 5010026 5010212 -137261232 + AluSg/x SINE Alu 125 310 -2 5937 174 30 85 chr9 5010212 5011575 -137259869 + L1MA2 LINE L1 6631 7723 0 2209 150 0 0 chr9 5011580 5011941 -137259503 + L1 LINE L1 4644 5004 -1142 1303 198 68 0 chr9 5011941 5012178 -137259266 + AluJb SINE Alu 1 253 -59 1992 158 0 0 chr9 5013801 5014099 -137257345 + AluJo SINE Alu 1 298 -14 699 290 45 0 chr9 5014385 5014606 -137256838 + MIR SINE MIR 32 262 0 269 323 91 5 chr9 5014610 5014796 -137256648 - L1M4 LINE L1 -1010 5136 4935 2120 113 0 10 chr9 5014918 5015210 -137256234 + AluSx SINE Alu 18 306 -6 27 87 0 0 chr9 5015538 5015607 -137255837 + AT_rich Low_complexity Low_complexity 1 69 0 33150 100 12 59 chr9 5015617 5022071 -137249373 + L1PA7 LINE L1 12 6153 -1 295 264 0 11 chr9 5022773 5022860 -137248584 - L1MDb LINE L1 -5432 977 892 22 0 0 0 chr9 5022903 5022925 -137248519 + AT_rich Low_complexity Low_complexity 1 22 0 747 238 165 79 chr9 5023157 5023689 -137247755 + MLT1L LTR MaLR 4 580 -8 279 221 44 15 chr9 5023795 5023863 -137247581 - L2 LINE L2 -13 3300 3231 587 317 96 30 chr9 5023917 5024585 -137246859 - L2 LINE L2 -226 3046 2334 308 265 65 37 chr9 5024593 5024808 -137246636 - L1MC4 LINE L1 -1 8041 7821 1682 192 13 37 chr9 5024841 5025060 -137246384 - L1ME2 LINE L1 -10 6154 5936 1156 256 62 41 chr9 5025060 5025908 -137245536 - L1MB2 LINE L1 -224 6341 1476 257 0 30 0 chr9 5025910 5025943 -137245501 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 842 206 0 0 chr9 5025948 5026094 -137245350 - FRAM SINE Alu -30 146 1 748 211 34 96 chr9 5026099 5026507 -137244937 - L1ME LINE L1 -5136 934 552 251 111 0 22 chr9 5026919 5026964 -137244480 + (GGGA)n Simple_repeat Simple_repeat 2 45 0 490 243 18 0 chr9 5026972 5027083 -137244361 + MER103 DNA DNA 8 120 -46 1377 170 88 28 chr9 5027112 5027395 -137244049 - AluJb SINE Alu -12 300 1 265 204 174 51 chr9 5027575 5027673 -137243771 + MIR SINE MIR 21 130 -78 2148 121 0 7 chr9 5028640 5028937 -137242507 - AluSx SINE Alu -17 295 1 272 279 52 10 chr9 5029409 5029575 -137241869 - LTR16C LTR ERVL -269 222 2 414 280 95 11 chr9 5030297 5030515 -137240929 + MLT1H LTR MaLR 62 334 -215 5116 63 38 0 chr9 5030592 5031227 -137240217 - PABL_A LTR ERV1 -1 659 1 220 221 103 29 chr9 5031462 5031530 -137239914 + MER5A DNA MER1_type 1 73 -116 478 207 78 17 chr9 5031532 5031648 -137239796 + L1ME2 LINE L1 5700 5822 -344 1175 127 0 0 chr9 5031648 5031813 -137239631 - AluSg/x SINE Alu -14 298 134 1175 213 63 72 chr9 5031813 5032161 -137239283 + L1ME2 LINE L1 5819 6163 -1 1951 121 34 14 chr9 5032224 5032521 -137238923 - AluJb SINE Alu -9 303 1 270 250 18 71 chr9 5032559 5032671 -137238773 + LTR67 LTR ERVL 32 190 -367 2256 105 0 0 chr9 5032893 5033187 -137238257 + AluSq SINE Alu 6 299 -14 409 260 57 24 chr9 5033209 5033332 -137238112 + L2 LINE L2 3182 3308 -5 1753 160 21 63 chr9 5033697 5034078 -137237366 + MLT1A1 LTR MaLR 1 365 0 289 243 97 29 chr9 5034588 5034691 -137236753 + MIR SINE MIR 152 261 -1 288 309 78 123 chr9 5034886 5035245 -137236199 - L2 LINE L2 -13 3259 2917 291 140 0 0 chr9 5035269 5035319 -137236125 + (TG)n Simple_repeat Simple_repeat 2 51 0 254 292 43 75 chr9 5035396 5035557 -137235887 + MIR3 SINE MIR 17 172 -36 859 257 61 39 chr9 5036113 5036393 -137235051 + MLT1K LTR MaLR 138 423 -165 265 107 18 36 chr9 5036420 5036476 -137234968 + (GGGA)n Simple_repeat Simple_repeat 4 58 0 248 152 0 22 chr9 5036559 5036605 -137234839 + HSMAR1 DNA Mariner 1 45 -1242 2261 109 0 22 chr9 5036640 5036960 -137234484 - AluSq SINE Alu 0 313 1 234 250 0 0 chr9 5036978 5037026 -137234418 + MLT1K LTR MaLR 524 571 -17 2106 184 37 31 chr9 5037223 5037679 -137233765 + MLT1C LTR MaLR 3 461 -6 196 289 111 11 chr9 5039357 5039447 -137231997 - L2 LINE L2 -33 3239 3141 495 274 169 10 chr9 5039591 5039792 -137231652 - L1ME LINE L1 -307 5814 5582 1728 199 3 0 chr9 5040054 5040341 -137231103 + AluJb SINE Alu 1 288 -24 26 0 0 0 chr9 5040422 5040448 -137230996 + AT_rich Low_complexity Low_complexity 1 26 0 246 132 0 0 chr9 5042343 5042396 -137229048 + (TTTTA)n Simple_repeat Simple_repeat 4 56 0 2209 129 3 0 chr9 5042411 5042722 -137228722 - AluSx SINE Alu 0 312 1 329 274 133 0 chr9 5042800 5042935 -137228509 - MARNA DNA Mariner -199 387 235 979 112 0 42 chr9 5043175 5043318 -137228126 + AluJo SINE Alu 6 142 -170 271 62 0 0 chr9 5043318 5043350 -137228094 + AluSp/q SINE Alu 219 250 -53 1034 210 0 40 chr9 5043350 5043574 -137227870 + AluJo SINE Alu 85 299 -13 1885 211 25 3 chr9 5043998 5044354 -137227090 - MLT1A1 LTR MaLR -1 364 1 217 248 186 18 chr9 5044519 5044632 -137226812 + MIR3 SINE MIR 28 159 -49 764 292 65 27 chr9 5044804 5045322 -137226122 + MLT1K LTR MaLR 13 580 -8 730 20 41 0 chr9 5046137 5046235 -137225209 + (AATAG)n Simple_repeat Simple_repeat 3 104 0 1820 176 0 0 chr9 5046255 5046550 -137224894 + AluJo SINE Alu 1 295 -17 1864 152 13 23 chr9 5047753 5048062 -137223382 + AluJo SINE Alu 1 306 -6 299 253 137 11 chr9 5048198 5048293 -137223151 + MER103 DNA DNA 1 107 -59 2089 127 10 7 chr9 5048637 5048928 -137222516 - AluSq SINE Alu -21 292 1 221 245 0 0 chr9 5048995 5049044 -137222400 + (CATATA)n Simple_repeat Simple_repeat 6 54 0 2110 107 17 3 chr9 5049062 5049351 -137222093 + AluSg SINE Alu 1 293 -17 2002 100 0 8 chr9 5049558 5049817 -137221627 + AluSq SINE Alu 9 265 -48 243 88 0 0 chr9 5049949 5049983 -137221461 + (A)n Simple_repeat Simple_repeat 1 34 0 603 316 30 6 chr9 5050392 5050560 -137220884 + MLT1K LTR MaLR 2 173 -415 22 35 0 0 chr9 5050604 5050633 -137220811 + AT_rich Low_complexity Low_complexity 1 29 0 188 229 29 57 chr9 5050691 5050761 -137220683 - MIR SINE MIR -63 145 78 277 100 0 0 chr9 5050891 5050931 -137220513 - FRAM/FAM SINE Alu -93 82 43 385 250 136 15 chr9 5050931 5051063 -137220381 + MLT1K LTR MaLR 421 568 -20 235 259 151 0 chr9 5051179 5051318 -137220126 - MIR SINE MIR -6 256 89 252 272 160 0 chr9 5051902 5052027 -137219417 - MIR SINE MIR -115 147 3 549 201 86 65 chr9 5052425 5052564 -137218880 + FLAM_C SINE Alu 1 142 -1 1102 113 6 0 chr9 5054478 5054637 -137216807 + L1PA10 LINE L1 6008 6167 -1 962 164 53 0 chr9 5054694 5054846 -137216598 + FRAM SINE Alu 1 155 -21 1763 201 105 62 chr9 5055797 5056383 -137215061 + MLT1E2 LTR MaLR 1 624 0 1203 246 163 12 chr9 5056666 5057065 -137214379 + LTR40c LTR ERVL 6 464 -1 28 61 0 0 chr9 5058040 5058089 -137213355 + AT_rich Low_complexity Low_complexity 1 49 0 675 164 9 0 chr9 5058344 5058454 -137212990 - FLAM_A SINE Alu -13 129 19 442 269 32 106 chr9 5058615 5058897 -137212547 - L2 LINE L2 -7 3306 3046 325 138 35 0 chr9 5059395 5059453 -137211991 - MER5B DNA MER1_type -3 175 116 2229 187 52 23 chr9 5059453 5059977 -137211467 + L1MB8 LINE L1 4788 5326 -820 418 184 41 19 chr9 5059983 5060224 -137211220 + AluJo SINE Alu 4 301 -11 4362 164 23 26 chr9 5060234 5061079 -137210365 + L1MB8 LINE L1 5336 6177 -1 2497 75 7 0 chr9 5063074 5063381 -137208063 - AluSg SINE Alu -1 309 1 2504 57 7 0 chr9 5064535 5064831 -137206613 + AluY SINE Alu 1 298 -13 671 258 56 56 chr9 5064832 5065065 -137206379 + MIR SINE MIR 8 240 -22 25 75 0 0 chr9 5065158 5065211 -137206233 + AT_rich Low_complexity Low_complexity 1 53 0 321 157 0 0 chr9 5065320 5065371 -137206073 + MER66A LTR ERV1 287 337 -141 206 333 81 9 chr9 5065558 5065669 -137205775 - MIR SINE MIR -123 139 21 2380 75 0 3 chr9 5065975 5066270 -137205174 + AluY SINE Alu 1 294 -17 231 36 0 0 chr9 5067645 5067673 -137203771 + (A)n Simple_repeat Simple_repeat 1 28 0 2077 111 31 0 chr9 5070978 5071267 -137200177 + AluSx SINE Alu 2 299 -13 443 274 127 6 chr9 5073043 5073200 -137198244 + Charlie8 DNA MER1_type 110 285 -2132 240 319 118 0 chr9 5075459 5075578 -137195866 - MIR SINE MIR -6 256 124 301 270 60 60 chr9 5075934 5076149 -137195295 + L1MC4 LINE L1 7809 8023 -19 28 29 0 0 chr9 5076283 5076318 -137195126 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr9 5077073 5077102 -137194342 + AT_rich Low_complexity Low_complexity 1 29 0 612 294 63 25 chr9 5079031 5079269 -137192175 + MIR SINE MIR 13 259 -3 241 307 0 13 chr9 5079307 5079382 -137192062 - Charlie4 DNA MER1_type 0 1961 1888 253 242 129 40 chr9 5080836 5080960 -137190484 + L1MC/D LINE L1 5689 5823 -1985 182 288 0 15 chr9 5082469 5082535 -137188909 - MIR SINE MIR -183 79 15 504 284 95 9 chr9 5083239 5083450 -137187994 + MIR SINE MIR 18 246 -16 25 0 0 0 chr9 5083707 5083732 -137187712 + AT_rich Low_complexity Low_complexity 1 25 0 272 319 0 0 chr9 5084696 5084790 -137186654 + MIR SINE MIR 169 262 0 217 345 115 0 chr9 5085195 5085334 -137186110 + MIR SINE MIR 61 215 -47 2482 76 7 0 chr9 5085373 5085675 -137185769 - AluSc SINE Alu -5 304 1 316 294 59 64 chr9 5086186 5086373 -137185071 + MIR3 SINE MIR 12 197 -11 1257 159 34 0 chr9 5086519 5086727 -137184717 + AluJo SINE Alu 86 300 -12 397 242 47 8 chr9 5087096 5087224 -137184220 + MIR3 SINE MIR 62 194 -14 524 289 13 0 chr9 5088231 5088383 -137183061 - MER102a DNA MER1_type 0 330 177 194 125 0 25 chr9 5088468 5088508 -137182936 + (CCA)n Simple_repeat Simple_repeat 3 41 0 21 0 0 0 chr9 5089428 5089449 -137181995 + AT_rich Low_complexity Low_complexity 1 21 0 2366 46 70 0 chr9 5090015 5090300 -137181144 - AluY SINE Alu -6 305 1 357 82 0 0 chr9 5090424 5090473 -137180971 + (CA)n Simple_repeat Simple_repeat 1 49 0 1270 167 58 109 chr9 5091946 5092257 -137179187 - AluJb SINE Alu -17 295 1 628 135 162 18 chr9 5092262 5092373 -137179071 - FLAM_C SINE Alu -5 128 2 381 175 0 0 chr9 5092391 5092448 -137178996 - AluJ/FLAM SINE Alu -244 58 2 1324 183 117 11 chr9 5093022 5093295 -137178149 + AluSx SINE Alu 1 302 -10 471 261 11 50 chr9 5093636 5093816 -137177628 + L1MC4a LINE L1 5710 5882 -1926 198 0 0 0 chr9 5094901 5094923 -137176521 + (A)n Simple_repeat Simple_repeat 1 22 0 30 0 0 0 chr9 5095340 5095370 -137176074 + AT_rich Low_complexity Low_complexity 1 30 0 1776 152 24 20 chr9 5095371 5095667 -137175777 - AluJo SINE Alu -13 299 3 228 283 0 0 chr9 5095688 5095734 -137175710 + polypurine Low_complexity Low_complexity 4 49 0 822 246 26 26 chr9 5096232 5096427 -137175017 + MSTD LTR MaLR 1 195 -201 615 237 0 8 chr9 5096429 5096560 -137174884 + FLAM_A SINE Alu 4 133 -9 992 213 29 24 chr9 5096562 5096769 -137174675 + MSTD LTR MaLR 187 394 -2 291 330 9 9 chr9 5096826 5096932 -137174512 - MIR SINE MIR -135 127 22 659 244 8 0 chr9 5096932 5097063 -137174381 - FLAM_C SINE Alu -1 132 1 317 330 84 6 chr9 5097164 5097343 -137174101 - MER112 DNA MER1_type -18 242 50 497 116 16 132 chr9 5098292 5098377 -137173067 - L1PB4 LINE L1 0 6156 6063 189 0 0 0 chr9 5098377 5098398 -137173046 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 2348 49 0 0 chr9 5098398 5098664 -137172780 - AluSc SINE Alu -29 280 15 497 116 16 132 chr9 5098664 5098706 -137172738 - L1PB4 LINE L1 -91 6065 6043 252 163 23 0 chr9 5098839 5098882 -137172562 - MER1B DNA MER1_type 0 329 286 978 163 0 18 chr9 5098882 5099048 -137172396 + MER1B DNA MER1_type 122 284 -55 23 0 0 0 chr9 5099241 5099264 -137172180 + AT_rich Low_complexity Low_complexity 1 23 0 2113 111 30 3 chr9 5099306 5099604 -137171840 - AluSc SINE Alu -3 306 1 21 0 0 0 chr9 5099810 5099831 -137171613 + AT_rich Low_complexity Low_complexity 1 21 0 2342 107 0 0 chr9 5099984 5100292 -137171152 + AluSq SINE Alu 1 308 -5 1925 119 0 80 chr9 5100408 5100745 -137170699 + AluJb SINE Alu 1 310 -2 25 51 0 0 chr9 5100821 5100860 -137170584 + AT_rich Low_complexity Low_complexity 1 39 0 203 138 0 0 chr9 5102336 5102365 -137169079 + (TTCA)n Simple_repeat Simple_repeat 2 30 0 554 175 143 0 chr9 5102819 5102945 -137168499 + MIR SINE MIR 13 156 -106 2322 102 7 3 chr9 5103519 5103822 -137167622 - AluSx SINE Alu -6 306 3 389 221 14 83 chr9 5104203 5104348 -137167096 - MIR SINE MIR -71 191 57 564 278 125 33 chr9 5104440 5105005 -137166439 - L2 LINE L2 -2 3270 2646 250 302 63 45 chr9 5105086 5105308 -137166136 - MIR SINE MIR -13 249 24 636 206 58 5 chr9 5106047 5106148 -137165296 - MER5C DNA MER1_type -50 274 180 1617 131 21 100 chr9 5106148 5106477 -137164967 - AluYb8 SINE Alu -15 303 1 636 206 58 5 chr9 5106477 5106564 -137164880 - MER5C DNA MER1_type -144 180 76 369 189 131 143 chr9 5106878 5107053 -137164391 + MER106B DNA MER1_type 7 1002 -57 1035 184 9 55 chr9 5107597 5107661 -137163783 - MER3 DNA MER1_type -1 208 143 909 119 0 15 chr9 5107661 5107795 -137163649 + FLAM_C SINE Alu 1 132 -1 1035 184 9 55 chr9 5107795 5107947 -137163497 - MER3 DNA MER1_type -66 143 2 624 242 55 28 chr9 5107978 5108160 -137163284 + MIR SINE MIR 2 188 -74 246 254 0 0 chr9 5108192 5108251 -137163193 + (TTA)n Simple_repeat Simple_repeat 2 60 0 322 313 37 12 chr9 5110439 5110602 -137160842 + L1ME4a LINE L1 5736 5902 -219 21 71 0 0 chr9 5110736 5110778 -137160666 + AT_rich Low_complexity Low_complexity 1 42 0 2124 124 3 0 chr9 5110871 5111175 -137160269 + AluSx SINE Alu 1 305 0 1400 148 14 9 chr9 5111766 5111982 -137159462 + AluSx SINE Alu 1 217 -95 23 33 0 0 chr9 5112064 5112094 -137159350 + AT_rich Low_complexity Low_complexity 1 30 0 745 125 8 33 chr9 5112094 5112214 -137159230 - FLAM_C SINE Alu -16 117 1 2443 91 0 10 chr9 5112222 5112530 -137158914 - AluSx SINE Alu -7 305 1 2556 38 3 10 chr9 5112788 5113101 -137158343 - L1PA2 LINE L1 -215 5940 5630 1816 33 0 0 chr9 5113076 5113288 -137158156 + L1PA2 LINE L1 5944 6155 0 * 435 287 172 4 chr9 5113773 5114017 -137157427 - L3 LINE CR1 -45 1532 1248 299 354 35 0 chr9 5113988 5114101 -137157343 + L3 LINE CR1 1237 1353 -224 * 231 146 0 0 chr9 5114243 5114284 -137157160 + (CA)n Simple_repeat Simple_repeat 2 42 0 508 256 34 0 chr9 5114664 5114781 -137156663 + MER45A DNA AcHobo 58 178 0 1941 132 170 16 chr9 5115497 5115868 -137155576 - MSTA LTR MaLR 0 428 1 866 132 0 22 chr9 5116727 5116863 -137154581 + FLAM_C SINE Alu 6 138 -5 22 35 0 0 chr9 5117439 5117468 -137153976 + AT_rich Low_complexity Low_complexity 1 29 0 3364 176 15 45 chr9 5117992 5118298 -137153146 - MER82 DNA MER2_type 0 653 339 1849 168 7 0 chr9 5118298 5118589 -137152855 + AluJo SINE Alu 5 297 -15 1623 157 95 4 chr9 5118595 5118869 -137152575 + AluJo SINE Alu 1 299 -13 3364 176 15 45 chr9 5118869 5119226 -137152218 - MER82 DNA MER2_type -319 334 3 1002 254 29 41 chr9 5119339 5119681 -137151763 - MER46C DNA MER2_type 0 338 1 345 258 31 21 chr9 5119976 5120073 -137151371 - L2 LINE L2 -9 3263 3166 2348 95 3 0 chr9 5120533 5120827 -137150617 - AluSx SINE Alu -17 295 1 1035 126 16 60 chr9 5120912 5121094 -137150350 + FRAM SINE Alu 1 168 -8 2852 66 56 13 chr9 5121135 5121531 -137149913 + L1PA12 LINE L1 5741 6153 -15 2190 108 0 3 chr9 5121550 5121864 -137149580 + AluSx SINE Alu 1 313 0 1909 166 0 7 chr9 5122703 5123005 -137148439 - AluJb SINE Alu -12 300 1 264 256 51 34 chr9 5123461 5123578 -137147866 + MIR SINE MIR 94 212 -50 187 296 43 62 chr9 5125720 5125882 -137145562 - L2 LINE L2 -181 3091 2933 225 338 39 26 chr9 5127295 5127449 -137143995 - L2 LINE L2 -178 3094 2939 2312 99 3 0 chr9 5127636 5127930 -137143514 - AluSx SINE Alu -16 296 2 338 304 181 24 chr9 5127931 5128312 -137143132 - L2 LINE L2 -601 2713 2273 567 255 87 10 chr9 5128376 5128572 -137142872 + MIR SINE MIR 43 253 -9 417 301 56 4 chr9 5128570 5128819 -137142625 - L2 LINE L2 -1114 2200 1939 * 230 143 57 0 chr9 5128891 5128926 -137142518 - MER3 DNA MER1_type -2 207 171 * 436 171 98 0 chr9 5128911 5128993 -137142451 - MER3 DNA MER1_type -118 91 2 1806 174 0 32 chr9 5130095 5130411 -137141033 + AluJb SINE Alu 1 306 -6 2017 148 0 0 chr9 5130455 5130752 -137140692 + AluJb SINE Alu 1 297 -15 459 0 0 0 chr9 5130758 5130809 -137140635 + (TG)n Simple_repeat Simple_repeat 2 52 0 258 215 0 0 chr9 5130874 5130953 -137140491 + (TAG)n Simple_repeat Simple_repeat 2 80 0 277 300 0 0 chr9 5130954 5131034 -137140410 + (CAG)n Simple_repeat Simple_repeat 1 80 0 575 66 0 0 chr9 5131055 5131131 -137140313 - L1PA8 LINE L1 -2 6170 6095 562 302 74 23 chr9 5131142 5131357 -137140087 - MIR SINE MIR -15 247 22 645 298 41 5 chr9 5133732 5133950 -137137494 + MIR SINE MIR 25 250 -12 270 0 0 0 chr9 5134010 5134040 -137137404 + (TC)n Simple_repeat Simple_repeat 1 30 0 270 0 0 0 chr9 5134039 5134069 -137137375 + (CA)n Simple_repeat Simple_repeat 1 30 0 207 69 0 0 chr9 5136370 5136399 -137135045 + (TA)n Simple_repeat Simple_repeat 1 29 0 1640 204 3 0 chr9 5137721 5138015 -137133429 - AluJb SINE Alu -12 300 6 1813 162 13 7 chr9 5138211 5138514 -137132930 + AluJb SINE Alu 1 305 -7 374 332 101 5 chr9 5139218 5139426 -137132018 + MIR SINE MIR 28 255 -7 2200 108 0 0 chr9 5140094 5140380 -137131064 - AluSx SINE Alu -26 286 1 2420 90 0 0 chr9 5142189 5142490 -137128954 + AluSx SINE Alu 1 301 -11 637 228 124 5 chr9 5142535 5142737 -137128707 - MIR SINE MIR -22 240 15 953 197 95 61 chr9 5142836 5143100 -137128344 + L1MA10 LINE L1 6062 6334 0 628 226 92 36 chr9 5143121 5143314 -137128130 - MIR SINE MIR -21 241 38 230 280 66 117 chr9 5143663 5144348 -137127096 + L2 LINE L2 1745 2394 -920 2336 69 13 10 chr9 5144363 5144667 -137126777 - AluY SINE Alu -5 306 2 901 254 42 5 chr9 5147114 5147327 -137124117 - MIR SINE MIR 0 262 42 820 146 7 42 chr9 5147331 5147475 -137123969 + FLAM_C SINE Alu 5 143 0 450 0 0 0 chr9 5147476 5147526 -137123918 + (CA)n Simple_repeat Simple_repeat 2 51 0 2190 135 5 53 chr9 5149072 5149451 -137121993 - MER46B DNA MER2_type 0 236 1 217 180 0 66 chr9 5149496 5149557 -137121887 + T-rich Low_complexity Low_complexity 3 59 0 2128 165 46 6 chr9 5149654 5150005 -137121439 - MLT1A1 LTR MaLR 0 365 1 258 106 0 0 chr9 5150617 5150664 -137120780 + (GA)n Simple_repeat Simple_repeat 1 47 0 262 213 197 57 chr9 5151148 5151270 -137120174 + MIR SINE MIR 81 219 -43 427 131 0 24 chr9 5151328 5151412 -137120032 + (TTCC)n Simple_repeat Simple_repeat 3 84 0 691 191 27 48 chr9 5152946 5153093 -137118351 + MIR SINE MIR 64 207 -55 2257 107 17 0 chr9 5153306 5153606 -137117838 + AluSg SINE Alu 1 305 -5 466 283 133 52 chr9 5153750 5154150 -137117294 - L2 LINE L2 -54 3259 2828 189 254 102 0 chr9 5154193 5154252 -137117192 - L3 LINE CR1 -324 1253 1189 784 163 16 8 chr9 5154574 5154703 -137116741 - FLAM_C SINE Alu -3 130 1 217 208 51 168 chr9 5155254 5155451 -137115993 + L2 LINE L2 2992 3165 -107 239 301 38 30 chr9 5155619 5155752 -137115692 + L1ME4a LINE L1 5795 5928 -193 291 263 66 46 chr9 5155760 5155912 -137115532 + L1ME4a LINE L1 5961 6115 -6 21 0 0 0 chr9 5155926 5155947 -137115497 + AT_rich Low_complexity Low_complexity 1 21 0 43573 32 24 1 chr9 5155956 5161968 -137109476 + L1PA3 LINE L1 2 6155 0 25 0 0 0 chr9 5161982 5162007 -137109437 + AT_rich Low_complexity Low_complexity 1 25 0 667 263 0 15 chr9 5162035 5162168 -137109276 - AluJo/FRAM SINE Alu -47 265 135 1413 183 141 8 chr9 5162168 5162430 -137109014 - AluJo SINE Alu -5 297 1 276 320 50 50 chr9 5162523 5162723 -137108721 + L2 LINE L2 2885 3084 -188 270 116 0 0 chr9 5162925 5162968 -137108476 + (TTCA)n Simple_repeat Simple_repeat 3 45 0 1969 152 7 7 chr9 5163102 5163412 -137108032 + AluSx SINE Alu 1 310 -2 1937 147 3 0 chr9 5163747 5164039 -137107405 - AluSx SINE Alu -19 293 1 482 237 21 0 chr9 5164791 5164888 -137106556 + MER81 DNA DNA 2 100 -14 22 0 0 0 chr9 5165421 5165443 -137106001 + AT_rich Low_complexity Low_complexity 1 22 0 180 255 21 0 chr9 5165657 5165704 -137105740 + L2 LINE L2 3225 3272 0 224 179 30 60 chr9 5166086 5166153 -137105291 - MIR SINE MIR -94 168 104 1828 145 24 17 chr9 5166153 5166442 -137105002 + AluJb SINE Alu 1 291 -21 212 270 54 14 chr9 5166462 5166536 -137104908 - MIR SINE MIR -93 115 39 2364 92 3 0 chr9 5166737 5167041 -137104403 - AluSp SINE Alu -8 305 1 529 246 36 0 chr9 5167453 5167563 -137103881 + MER81 DNA DNA 1 114 0 349 226 151 8 chr9 5167659 5167799 -137103645 + L1ME4a LINE L1 1194 6108 -13 2278 91 3 3 chr9 5169305 5169601 -137101843 - AluSx SINE Alu -3 309 14 785 196 141 0 chr9 5170539 5170702 -137100742 + MER5A DNA MER1_type 4 189 0 201 260 29 96 chr9 5170790 5170894 -137100550 + MIR SINE MIR 37 133 -75 1168 170 25 34 chr9 5171435 5171645 -137099799 + Charlie1 DNA MER1_type 1 210 -2551 2373 94 3 0 chr9 5171645 5171944 -137099500 - AluSp SINE Alu -13 300 1 1168 170 25 34 chr9 5171944 5171968 -137099476 + Charlie1 DNA MER1_type 210 233 -2528 647 188 38 0 chr9 5171957 5172090 -137099354 + Charlie1 DNA MER1_type 2619 2756 -5 * 312 311 75 12 chr9 5172760 5172921 -137098523 + L3b LINE CR1 1201 1371 -212 2415 73 0 0 chr9 5173154 5173471 -137097973 + AluSp SINE Alu 1 317 0 258 291 9 9 chr9 5174338 5174448 -137096996 + L1ME4a LINE L1 5817 5926 -195 2285 111 0 0 chr9 5174607 5174905 -137096539 + AluSx SINE Alu 6 303 -9 772 236 153 63 chr9 5176040 5176139 -137095305 + L1ME4a LINE L1 5623 5712 -409 1428 206 153 73 chr9 5176139 5176875 -137094569 + LTR50 LTR ERVL 1 795 0 772 236 153 63 chr9 5176875 5177233 -137094211 + L1ME4a LINE L1 5712 6121 0 496 156 13 0 chr9 5177242 5177319 -137094125 + AluJ/FLAM SINE Alu 7 84 -228 4123 100 32 12 chr9 5177964 5178565 -137092879 + L1MA3 LINE L1 5692 6304 -1 30 27 0 0 chr9 5178569 5178606 -137092838 + AT_rich Low_complexity Low_complexity 1 37 0 1729 127 0 4 chr9 5178611 5178870 -137092574 - AluSx SINE Alu -21 291 34 24 0 0 0 chr9 5178884 5178908 -137092536 + AT_rich Low_complexity Low_complexity 1 24 0 606 258 145 14 chr9 5179467 5179688 -137091756 - MIR SINE MIR 0 262 13 258 219 16 0 chr9 5179906 5179970 -137091474 + L1MC4 LINE L1 6655 6719 -1323 273 148 0 82 chr9 5179976 5180037 -137091407 - MIR SINE MIR -87 175 120 1772 240 41 7 chr9 5180039 5180452 -137090992 + L1ME1 LINE L1 5715 6141 -25 180 349 35 35 chr9 5180482 5180568 -137090876 - MIR SINE MIR -78 130 45 820 231 95 18 chr9 5180919 5181140 -137090304 - MIR SINE MIR -16 246 9 23 0 0 0 chr9 5181453 5181476 -137089968 + AT_rich Low_complexity Low_complexity 1 23 0 608 332 16 24 chr9 5181937 5182190 -137089254 + MIR SINE MIR 7 257 -5 1292 125 100 0 chr9 5182191 5182391 -137089053 - AluSg/x SINE Alu -7 305 86 2385 87 0 0 chr9 5182470 5182768 -137088676 + AluSx SINE Alu 1 298 -14 21 0 0 0 chr9 5184045 5184066 -137087378 + AT_rich Low_complexity Low_complexity 1 21 0 216 336 136 18 chr9 5185837 5185947 -137085497 - L2 LINE L2 -5 3267 3145 1084 214 140 84 chr9 5186001 5186394 -137085050 + MER20B DNA MER1_type 3 417 -366 705 250 66 0 chr9 5186410 5186622 -137084822 + MER20B DNA MER1_type 558 783 0 806 303 73 23 chr9 5187050 5187675 -137083769 + L2 LINE L2 2590 3253 -60 229 288 41 27 chr9 5187868 5187941 -137083503 + L2 LINE L2 3239 3312 -1 301 291 13 0 chr9 5188011 5188090 -137083354 + MIR3 SINE MIR 109 188 -20 404 250 24 40 chr9 5188120 5188244 -137083200 - L2 LINE L2 0 3272 3151 2086 115 0 3 chr9 5188360 5188669 -137082775 - AluSq SINE Alu 0 308 1 1263 102 0 0 chr9 5188929 5189095 -137082349 - AluSg/x SINE Alu 0 310 145 531 340 15 15 chr9 5189105 5189302 -137082142 + MIR SINE MIR 32 228 -34 386 272 34 60 chr9 5189973 5190147 -137081297 - MIR SINE MIR -11 197 28 578 194 0 20 chr9 5191418 5191516 -137079928 + MER2 DNA MER2_type 2 97 -248 1432 168 31 8 chr9 5191573 5191829 -137079615 + MER2 DNA MER2_type 83 344 -1 1683 170 18 0 chr9 5191922 5192224 -137079220 - AluJb SINE Alu 0 307 1 2027 135 0 0 chr9 5193162 5193450 -137077994 - AluSg SINE Alu -10 300 13 1986 136 0 19 chr9 5193879 5194187 -137077257 + AluSx SINE Alu 1 302 -10 1272 166 89 76 chr9 5194221 5194523 -137076921 + AluJb SINE Alu 1 306 -6 252 0 0 0 chr9 5194815 5194843 -137076601 + (TC)n Simple_repeat Simple_repeat 1 28 0 * 351 0 0 0 chr9 5194842 5194881 -137076563 + (CA)n Simple_repeat Simple_repeat 1 39 0 1118 170 71 20 chr9 5195063 5195316 -137076128 - MER58B DNA MER1_type 0 341 76 674 162 115 0 chr9 5195316 5195464 -137075980 + L1MB7 LINE L1 5572 5736 -448 2119 111 40 12 chr9 5195464 5195789 -137075655 - MSTC LTR MaLR 0 428 95 1991 182 43 0 chr9 5195789 5196157 -137075287 + L1MB7 LINE L1 5785 6168 -16 418 259 12 0 chr9 5196157 5196242 -137075202 - MER58B DNA MER1_type -252 89 4 198 0 0 0 chr9 5196280 5196302 -137075142 + (CA)n Simple_repeat Simple_repeat 2 23 0 25 51 0 0 chr9 5196359 5196398 -137075046 + AT_rich Low_complexity Low_complexity 1 39 0 198 71 0 0 chr9 5196775 5196803 -137074641 + (TAA)n Simple_repeat Simple_repeat 1 28 0 2129 115 82 6 chr9 5196905 5197235 -137074209 + L1PA13 LINE L1 5808 6162 -1 2212 121 3 0 chr9 5197466 5197771 -137073673 + AluSx SINE Alu 1 306 -6 2079 147 0 0 chr9 5197992 5198291 -137073153 - AluSx SINE Alu -13 299 1 4880 93 10 42 chr9 5198519 5198574 -137072870 - L1PB1 LINE L1 0 6151 6096 2387 42 0 3 chr9 5198574 5198890 -137072554 + AluY SINE Alu 1 315 0 4880 93 10 42 chr9 5198890 5199219 -137072225 - L1PB1 LINE L1 -55 6096 5797 297 0 0 0 chr9 5199219 5199252 -137072192 + (CA)n Simple_repeat Simple_repeat 2 34 0 4880 93 10 42 chr9 5199252 5199575 -137071869 - L1PB1 LINE L1 -354 5797 5465 574 286 10 41 chr9 5199594 5199790 -137071654 - MIR SINE MIR -71 191 2 1064 210 8 8 chr9 5200545 5200812 -137070632 + L1MB7 LINE L1 3063 3329 -2817 1963 143 27 0 chr9 5200814 5200981 -137070463 - AluSx SINE Alu -10 302 122 459 0 0 0 chr9 5200981 5201032 -137070412 + (TG)n Simple_repeat Simple_repeat 2 52 0 1963 143 27 0 chr9 5201032 5201157 -137070287 - AluSx SINE Alu -190 122 2 953 205 0 0 chr9 5201167 5201333 -137070111 - AluJb SINE Alu -20 292 127 8144 181 67 34 chr9 5201374 5202295 -137069149 + L1MB7 LINE L1 3341 4231 -1953 1636 99 0 5 chr9 5202295 5202516 -137068928 + AluSp SINE Alu 1 220 -93 246 146 0 0 chr9 5202516 5202564 -137068880 + AluSp SINE Alu 256 303 0 8144 181 67 34 chr9 5202564 5202724 -137068720 + L1MB7 LINE L1 4231 4384 -1800 2170 116 30 0 chr9 5202724 5203027 -137068417 + AluSp SINE Alu 1 312 -1 8144 181 67 34 chr9 5203027 5203804 -137067640 + L1MB7 LINE L1 4384 5318 -866 1791 168 3 25 chr9 5203804 5204119 -137067325 + AluJo SINE Alu 1 308 -4 8144 181 67 34 chr9 5204119 5204432 -137067012 + L1MB7 LINE L1 5318 5619 -565 4081 117 130 7 chr9 5204432 5205131 -137066313 - LTR1 LTR ERV1 0 785 1 2506 165 28 7 chr9 5205174 5205610 -137065834 + L1MB7 LINE L1 5616 6060 -124 2356 108 0 6 chr9 5205693 5206007 -137065437 - AluSx SINE Alu 0 312 1 1720 173 0 0 chr9 5206314 5206592 -137064852 + AluJb SINE Alu 2 279 -33 615 27 0 0 chr9 5206594 5206667 -137064777 + (GGAA)n Simple_repeat Simple_repeat 3 75 0 1015 157 30 35 chr9 5207490 5207688 -137063756 + MLT1C LTR MaLR 1 197 -270 721 220 58 73 chr9 5207718 5207977 -137063467 - MER93b LTR ERV1 -5 368 114 642 220 61 0 chr9 5207974 5208106 -137063338 - MER93b LTR ERV1 -216 157 18 * 1008 233 124 8 chr9 5208124 5208373 -137063071 + MLT1C LTR MaLR 190 467 0 1492 128 163 8 chr9 5208867 5209125 -137062319 + AluSg1 SINE Alu 1 298 -11 9156 52 50 0 chr9 5209481 5211296 -137060148 + L1PA5 LINE L1 4289 6141 -13 470 296 145 0 chr9 5217803 5217989 -137053455 - MIR SINE MIR -3 259 47 283 299 226 0 chr9 5218096 5218313 -137053131 + L2 LINE L2 2003 2268 -1046 26 82 0 0 chr9 5219111 5219172 -137052272 + AT_rich Low_complexity Low_complexity 1 61 0 822 259 160 32 chr9 5219211 5219265 -137052179 + L1MC4a LINE L1 5491 5537 -2271 1849 174 126 51 chr9 5219265 5219525 -137051919 - MLT1D LTR MaLR 0 505 266 2390 110 0 0 chr9 5219525 5219834 -137051610 - AluSx SINE Alu -3 309 1 1849 174 126 51 chr9 5219834 5220043 -137051401 - MLT1D LTR MaLR -239 266 1 822 259 160 32 chr9 5220043 5220389 -137051055 + L1MC4a LINE L1 5537 5942 -1866 2252 111 3 0 chr9 5221580 5221886 -137049558 + AluSx SINE Alu 1 307 -5 329 274 10 20 chr9 5221903 5222005 -137049439 - L1MCa LINE L1 -4358 2068 1968 714 212 62 36 chr9 5222194 5222241 -137049203 - MER3 DNA MER1_type -11 198 154 2118 109 0 3 chr9 5222241 5222546 -137048898 - AluSq SINE Alu 0 304 1 714 212 62 36 chr9 5222546 5222690 -137048754 - MER3 DNA MER1_type -55 154 1 289 211 40 0 chr9 5222690 5222766 -137048678 + L1MC5 LINE L1 7330 7408 -553 834 182 8 0 chr9 5222797 5222969 -137048475 + AluJb SINE Alu 150 322 0 2290 88 0 7 chr9 5222970 5223254 -137048190 + AluSp SINE Alu 1 282 -31 418 257 41 104 chr9 5223279 5223479 -137047965 + L1MC5 LINE L1 7474 7685 -357 2230 116 0 3 chr9 5223479 5223782 -137047662 - AluSp SINE Alu -11 302 1 418 257 41 104 chr9 5223782 5224089 -137047355 + L1MC5 LINE L1 7685 8015 -27 1605 183 14 10 chr9 5224110 5224399 -137047045 + AluJo SINE Alu 1 290 -22 2430 83 0 0 chr9 5224597 5224899 -137046545 - AluY SINE Alu -9 302 1 760 200 8 0 chr9 5225443 5225563 -137045881 + FLAM_A SINE Alu 1 121 -12 752 321 74 32 chr9 5225755 5226226 -137045218 - L2 LINE L2 0 3313 2823 2280 88 0 29 chr9 5226232 5226539 -137044905 + AluSx SINE Alu 1 298 -14 362 250 11 11 chr9 5226593 5226685 -137044759 + MLT1L LTR MaLR 1 92 -523 587 293 26 60 chr9 5226709 5226975 -137044469 + MLT1L LTR MaLR 206 462 -153 353 147 0 15 chr9 5226975 5227043 -137044401 + (TTCCC)n Simple_repeat Simple_repeat 2 68 0 1562 139 120 8 chr9 5227043 5227309 -137044135 - AluSg1 SINE Alu -13 296 1 343 296 133 0 chr9 5227310 5227445 -137043999 + MLT1L LTR MaLR 450 602 -13 1196 290 159 15 chr9 5227456 5228067 -137043377 - L2 LINE L2 -580 2734 2036 254 231 0 0 chr9 5228068 5228120 -137043324 - MIR SINE MIR -7 255 204 430 301 143 40 chr9 5228385 5228459 -137042985 - L1MC4a LINE L1 -1757 6051 5986 342 0 0 0 chr9 5228459 5228497 -137042947 + (CA)n Simple_repeat Simple_repeat 2 39 0 430 301 143 40 chr9 5228497 5229017 -137042427 - L1MC4a LINE L1 -1822 5986 5396 317 329 129 7 chr9 5229032 5229172 -137042272 + MIR SINE MIR 17 173 -89 335 306 43 3 chr9 5231486 5231586 -137039858 - MIR SINE MIR -102 106 2 1592 85 42 5 chr9 5231593 5231805 -137039639 + AluSp SINE Alu 75 294 -19 2100 115 0 50 chr9 5232312 5232486 -137038958 - AluSx SINE Alu -5 307 155 2296 85 7 3 chr9 5232486 5232781 -137038663 - AluY SINE Alu -15 296 1 2100 115 0 50 chr9 5232781 5232929 -137038515 - AluSx SINE Alu -157 155 1 202 146 62 0 chr9 5233106 5233154 -137038290 + (TTATA)n Simple_repeat Simple_repeat 3 53 0 229 139 66 7 chr9 5233156 5233307 -137038137 + (TA)n Simple_repeat Simple_repeat 2 161 0 222 361 0 0 chr9 5233691 5233763 -137037681 - L2 LINE L2 -445 2869 2798 2129 124 0 0 chr9 5234160 5234443 -137037001 + AluSc SINE Alu 1 283 -26 217 328 0 0 chr9 5234745 5234803 -137036641 - L2 LINE L2 -8 3264 3207 279 269 0 26 chr9 5235677 5235755 -137035689 - MIR3 SINE MIR -36 172 97 1663 183 10 28 chr9 5236037 5236327 -137035117 + AluJb SINE Alu 1 285 -27 1638 127 58 7 chr9 5236925 5237233 -137034211 + MER33 DNA MER1_type 1 324 0 2197 138 0 0 chr9 5237553 5237858 -137033586 + AluJo SINE Alu 1 305 -7 2256 89 0 7 chr9 5238163 5238454 -137032990 - AluSg SINE Alu -21 289 1 22 0 0 0 chr9 5238497 5238519 -137032925 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chr9 5238912 5238948 -137032496 + AT_rich Low_complexity Low_complexity 1 36 0 295 332 101 10 chr9 5239274 5239473 -137031971 - L2 LINE L2 -221 3051 2835 22 35 0 0 chr9 5239639 5239668 -137031776 + AT_rich Low_complexity Low_complexity 1 29 0 605 269 48 32 chr9 5239845 5240094 -137031350 - ERVL LTR ERVL -849 4915 4663 1011 303 63 30 chr9 5240250 5240775 -137030669 - ERVL LTR ERVL -1126 4638 4097 365 316 23 11 chr9 5240928 5241105 -137030339 - ERVL LTR ERVL -2805 2959 2781 2166 78 30 0 chr9 5241330 5241626 -137029818 - L1PA12 LINE L1 -4 6164 5860 30 0 0 0 chr9 5242003 5242033 -137029411 + AT_rich Low_complexity Low_complexity 1 30 0 2370 76 0 0 chr9 5242429 5242718 -137028726 - AluSq SINE Alu -16 297 9 377 208 176 0 chr9 5242764 5242889 -137028555 + L1ME4a LINE L1 5974 6120 -1 1693 197 3 3 chr9 5243317 5243617 -137027827 + AluJb SINE Alu 1 300 -12 22 0 0 0 chr9 5243617 5243639 -137027805 + AT_rich Low_complexity Low_complexity 1 22 0 875 236 100 9 chr9 5243917 5244146 -137027298 - MIR SINE MIR -12 250 1 1617 209 3 0 chr9 5244245 5244532 -137026912 - AluJo SINE Alu -20 292 5 2249 117 3 0 chr9 5244747 5245045 -137026399 + AluSg SINE Alu 1 299 -11 748 189 69 19 chr9 5245351 5245510 -137025934 - AluJo SINE Alu -24 288 122 1481 194 3 26 chr9 5245649 5245953 -137025491 - AluJo SINE Alu -15 297 1 2096 99 18 7 chr9 5245960 5246242 -137025202 - AluSx SINE Alu -27 285 1 710 179 0 30 chr9 5246519 5246653 -137024791 + FLAM_C SINE Alu 2 131 -2 22 0 0 0 chr9 5247862 5247884 -137023560 + AT_rich Low_complexity Low_complexity 1 22 0 351 293 75 45 chr9 5248298 5248431 -137023013 - L2 LINE L2 0 3272 3136 300 228 97 28 chr9 5248432 5248577 -137022867 + L1ME4a LINE L1 5713 5867 -254 450 261 85 13 chr9 5248684 5248837 -137022607 + L1ME4a LINE L1 5494 5657 -505 625 210 29 0 chr9 5248840 5248978 -137022466 + Charlie1 DNA MER1_type 5 146 -2615 * 1208 141 71 24 chr9 5248976 5249273 -137022171 + Charlie1 DNA MER1_type 2420 2730 -31 1035 154 135 5 chr9 5249379 5249587 -137021857 + MER46A DNA MER2_type 2 236 0 274 257 0 0 chr9 5250029 5250103 -137021341 + L1ME4a LINE L1 5978 6051 -70 33 25 0 0 chr9 5250126 5250166 -137021278 + AT_rich Low_complexity Low_complexity 1 40 0 1916 159 28 0 chr9 5250315 5250604 -137020840 - AluJo SINE Alu -15 297 1 636 244 73 6 chr9 5250822 5250986 -137020458 - MIR SINE MIR -3 259 85 2497 48 0 25 chr9 5252756 5253070 -137018374 + AluY SINE Alu 1 306 -5 359 269 107 13 chr9 5254312 5254461 -137016983 - MIR SINE MIR -44 218 56 23 0 0 0 chr9 5255334 5255357 -137016087 + AT_rich Low_complexity Low_complexity 1 23 0 197 200 67 50 chr9 5256002 5256062 -137015382 - MIR SINE MIR -200 62 2 28 29 0 0 chr9 5258517 5258552 -137012892 + AT_rich Low_complexity Low_complexity 1 35 0 2053 80 0 4 chr9 5258802 5259065 -137012379 + AluSc SINE Alu 1 262 -47 243 0 0 0 chr9 5259968 5259995 -137011449 + (TTTTTA)n Simple_repeat Simple_repeat 2 28 0 2484 26 0 40 chr9 5260372 5260675 -137010769 - AluY SINE Alu -20 291 1 1657 178 39 0 chr9 5260797 5261083 -137010361 + AluJo SINE Alu 5 301 -11 264 314 0 0 chr9 5263496 5263566 -137007878 - MIR SINE MIR -13 249 180 441 296 0 0 chr9 5264045 5264352 -137007092 + (CA)n Simple_repeat Simple_repeat 1 307 0 2249 111 7 0 chr9 5265093 5265400 -137006044 + AluSx SINE Alu 1 309 -3 1760 174 7 20 chr9 5265548 5265853 -137005591 - AluJb SINE Alu -11 301 1 720 229 171 26 chr9 5265955 5266354 -137005090 + MLT1K LTR MaLR 23 551 -37 181 231 96 0 chr9 5266444 5266496 -137004948 + L2 LINE L2 3171 3227 -45 506 296 46 15 chr9 5266508 5266704 -137004740 - MIR SINE MIR 0 262 61 1619 177 23 23 chr9 5266805 5267104 -137004340 + AluJo SINE Alu 1 299 -13 597 233 219 5 chr9 5267166 5267381 -137004063 - MIR SINE MIR 0 262 2 1697 173 127 0 chr9 5267717 5268040 -137003404 + MER47A DNA MER2_type 3 366 0 296 243 19 39 chr9 5268386 5268489 -137002955 + MLT1K LTR MaLR 461 561 -27 237 229 43 29 chr9 5269025 5269095 -137002349 + L2 LINE L2 3200 3270 -2 201 179 26 0 chr9 5269470 5269509 -137001935 + GA-rich Low_complexity Low_complexity 2 41 0 676 220 59 14 chr9 5269628 5269891 -137001553 + MLT2B1 LTR ERVL 1 274 -140 1977 115 20 7 chr9 5269940 5270235 -137001209 + AluSx SINE Alu 1 299 -13 1938 137 3 20 chr9 5270558 5270858 -137000586 + AluJo SINE Alu 1 295 -17 2032 143 0 7 chr9 5271278 5271578 -136999866 + AluSx SINE Alu 2 299 -13 2257 108 3 0 chr9 5271619 5271915 -136999529 - AluSx SINE Alu -15 297 1 261 231 87 29 chr9 5271925 5272029 -136999415 + L2 LINE L2 3113 3222 -91 219 294 71 24 chr9 5272451 5272536 -136998908 - MIR3 SINE MIR -30 178 90 1993 117 3 47 chr9 5272931 5273248 -136998196 + AluSx SINE Alu 1 303 -9 343 229 42 35 chr9 5273276 5273420 -136998024 + L1ME4a LINE L1 5921 6065 -56 360 313 60 76 chr9 5273761 5274128 -136997316 - L1ME4a LINE L1 -206 5915 5555 406 232 89 0 chr9 5274603 5274715 -136996729 + L1MB8 LINE L1 4080 4201 -1945 1567 156 0 0 chr9 5274729 5274954 -136996490 + AluJb SINE Alu 77 301 -11 1309 229 23 30 chr9 5274956 5275178 -136996266 + L1MB8 LINE L1 4808 5027 -1119 2262 92 17 7 chr9 5275178 5275473 -136995971 - AluSg SINE Alu -12 298 1 1309 229 23 30 chr9 5275473 5275643 -136995801 + L1MB8 LINE L1 5027 5197 -949 966 65 16 8 chr9 5275643 5275767 -136995677 + AluSq/x SINE Alu 1 125 -188 976 166 79 6 chr9 5275780 5276065 -136995379 + L1MB8 LINE L1 5188 5484 -694 14947 113 22 5 chr9 5276069 5278421 -136993023 - Tigger1 DNA MER2_type 0 2418 26 623 196 16 0 chr9 5278432 5278446 -136992998 + L1MB8 LINE L1 5478 5490 -694 2124 122 3 3 chr9 5278446 5278749 -136992695 + AluSx SINE Alu 1 303 -9 623 196 16 0 chr9 5278749 5278871 -136992573 + L1MB8 LINE L1 5490 5616 -568 726 171 0 0 chr9 5278872 5278989 -136992455 + FLAM_C SINE Alu 2 118 -15 344 300 0 0 chr9 5279002 5279092 -136992352 - L1MC4 LINE L1 -1339 6703 6614 405 177 0 0 chr9 5279094 5279173 -136992271 + (TA)n Simple_repeat Simple_repeat 1 79 0 2170 119 3 0 chr9 5279173 5279467 -136991977 - AluSq SINE Alu -18 295 1 841 178 34 0 chr9 5279482 5279628 -136991816 + FRAM SINE Alu 1 145 -31 3114 149 16 17 chr9 5279648 5279710 -136991734 + L1MB7 LINE L1 5609 5670 -514 1552 183 27 23 chr9 5279710 5280011 -136991433 + AluJo SINE Alu 1 302 -10 3114 149 16 17 chr9 5280011 5280525 -136990919 + L1MB7 LINE L1 5670 6184 0 21 36 0 0 chr9 5280597 5280625 -136990819 + AT_rich Low_complexity Low_complexity 1 28 0 1009 158 0 0 chr9 5280633 5280785 -136990659 + AluJb SINE Alu 156 307 -5 2607 100 10 5 chr9 5281275 5281666 -136989778 - L1PA13 LINE L1 -5 6158 5766 2042 172 98 5 chr9 5281929 5282097 -136989347 + Tigger2a DNA MER2_type 2 153 -2555 1805 174 10 10 chr9 5282097 5282407 -136989037 - AluJo SINE Alu -2 310 1 2042 172 98 5 chr9 5282407 5282634 -136988810 + Tigger2a DNA MER2_type 153 434 0 1588 146 8 16 chr9 5283053 5283300 -136988144 - AluJo SINE Alu -62 250 6 200 314 97 8 chr9 5283708 5283832 -136987612 + L2 LINE L2 1699 1833 -1481 1567 199 47 24 chr9 5284163 5284544 -136986900 + MLT1B LTR MaLR 1 390 0 198 208 0 0 chr9 5284667 5284715 -136986729 + (TGGA)n Simple_repeat Simple_repeat 1 48 0 1627 166 11 30 chr9 5284896 5285257 -136986187 + L1MB8 LINE L1 5716 6069 -109 25 31 0 0 chr9 5285252 5285284 -136986160 + AT_rich Low_complexity Low_complexity 1 32 0 * 633 168 0 18 chr9 5285284 5285397 -136986047 + AluJb SINE Alu 1 111 -201 495 123 0 0 chr9 5285397 5285556 -136985888 + (TA)n Simple_repeat Simple_repeat 1 159 0 324 250 3 31 chr9 5285549 5285676 -136985768 - L1MC4 LINE L1 -1337 6705 6614 * 1883 136 45 14 chr9 5285677 5285963 -136985481 - AluSx SINE Alu -17 295 1 45 34 0 0 chr9 5285963 5286022 -136985422 + AT_rich Low_complexity Low_complexity 1 59 0 2339 106 0 0 chr9 5286028 5286330 -136985114 + AluSx SINE Alu 1 302 -10 706 138 0 0 chr9 5286332 5286448 -136984996 + L1MB8 LINE L1 6063 6178 0 235 293 10 61 chr9 5286757 5286856 -136984588 - MIR3 SINE MIR -7 201 108 1817 149 24 7 chr9 5286884 5287172 -136984272 - AluJo SINE Alu -19 293 1 200 260 102 79 chr9 5287571 5287668 -136983776 + MIR3 SINE MIR 44 146 -62 1628 131 26 22 chr9 5287668 5287936 -136983508 + AluSx SINE Alu 36 304 -8 200 260 102 79 chr9 5287936 5287965 -136983479 + MIR3 SINE MIR 146 173 -35 477 269 91 62 chr9 5288201 5288368 -136983076 + L1ME4a LINE L1 5625 5786 -335 2267 106 0 0 chr9 5288368 5288660 -136982784 - AluSq SINE Alu -21 292 1 477 269 91 62 chr9 5288660 5288956 -136982488 + L1ME4a LINE L1 5786 6101 -20 1932 148 3 19 chr9 5288956 5289267 -136982177 - AluSx SINE Alu -6 306 1 1669 159 32 11 chr9 5289391 5289674 -136981770 - AluSq SINE Alu -10 303 15 1653 88 0 0 chr9 5289844 5290060 -136981384 + AluY SINE Alu 1 216 -95 264 100 0 0 chr9 5290253 5290293 -136981151 + (A)n Simple_repeat Simple_repeat 1 40 0 226 188 47 16 chr9 5290407 5290471 -136980973 - L1MB7 LINE L1 0 6184 6119 215 61 30 0 chr9 5290690 5290723 -136980721 + (GAAA)n Simple_repeat Simple_repeat 3 36 0 2205 91 39 0 chr9 5292804 5293089 -136978355 - AluSp SINE Alu -17 296 1 2043 134 3 17 chr9 5293092 5293390 -136978054 - AluSq SINE Alu -18 295 2 247 232 0 0 chr9 5294052 5294108 -136977336 + L2 LINE L2 3254 3309 -4 1908 134 31 0 chr9 5294131 5294422 -136977022 - AluSx SINE Alu -12 300 1 1916 209 88 2 chr9 5294505 5294935 -136976509 + MLT1C LTR MaLR 1 467 0 1902 135 3 64 chr9 5295117 5295428 -136976016 + AluJb SINE Alu 1 292 -20 2023 124 0 31 chr9 5295438 5295759 -136975685 + AluSx SINE Alu 1 312 0 1143 168 0 0 chr9 5295759 5295932 -136975512 + AluSg/x SINE Alu 130 302 -8 463 274 73 22 chr9 5295937 5296116 -136975328 - L2 LINE L2 -337 2977 2790 1295 242 50 29 chr9 5296116 5296622 -136974822 + MLT1G LTR MaLR 1 518 -49 411 226 110 108 chr9 5296689 5297429 -136974015 - L1MD3 LINE L1 -1 7994 7141 1503 128 83 55 chr9 5297429 5297718 -136973726 + AluJo SINE Alu 1 297 -15 411 226 110 108 chr9 5297718 5298327 -136973117 - L1MD3 LINE L1 -854 7141 6535 216 0 0 0 chr9 5298379 5298403 -136973041 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1599 152 3 69 chr9 5298406 5298696 -136972748 - AluJo SINE Alu -30 282 12 1642 252 105 16 chr9 5299189 5299753 -136971691 - L2 LINE L2 -773 2541 1928 2292 119 0 3 chr9 5299769 5300080 -136971364 + AluSg SINE Alu 1 310 0 198 204 0 0 chr9 5300876 5300920 -136970524 - L2 LINE L2 -773 2541 2498 710 251 182 19 chr9 5300920 5301227 -136970217 - MLT1A1 LTR MaLR -8 357 1 1122 180 80 51 chr9 5301414 5301783 -136969661 - MSTC LTR MaLR 0 428 15 338 241 13 13 chr9 5302137 5302216 -136969228 + MER63 DNA MER1_type 688 766 -296 395 221 0 0 chr9 5302237 5302305 -136969139 + MER63 DNA MER1_type 994 1061 0 977 229 25 55 chr9 5302307 5302634 -136968810 + L1MC4a LINE L1 5256 5572 -2236 1126 183 116 12 chr9 5302634 5302885 -136968559 - LTR23 LTR ERV1 0 437 161 1910 159 0 7 chr9 5302980 5303358 -136968086 + AluSx SINE Alu 1 376 0 2285 117 0 0 chr9 5303433 5303742 -136967702 - AluSx SINE Alu -3 309 1 480 148 23 0 chr9 5303742 5303830 -136967614 - LTR23 LTR ERV1 -347 90 1 250 250 0 16 chr9 5303830 5303894 -136967550 + L1MC4a LINE L1 5569 5631 -2177 490 302 113 8 chr9 5303898 5304146 -136967298 + L1MC4a LINE L1 5670 5943 -1865 1431 161 0 0 chr9 5304185 5304403 -136967041 + AluJb SINE Alu 1 218 -94 2208 104 23 7 chr9 5304451 5304758 -136966686 + AluSp SINE Alu 1 312 -1 410 206 20 0 chr9 5304859 5304961 -136966483 + CT-rich Low_complexity Low_complexity 1 104 0 2129 145 0 3 chr9 5304983 5305294 -136966150 - AluJo SINE Alu -2 310 1 1640 179 16 52 chr9 5305745 5306034 -136965410 - MER4D LTR ERV1 0 903 628 1898 174 26 0 chr9 5306034 5306338 -136965106 + AluJo SINE Alu 1 312 0 1640 179 16 52 chr9 5306338 5306411 -136965033 - MER4D LTR ERV1 -275 628 554 1781 147 35 7 chr9 5306431 5306717 -136964727 - MER49 LTR ERV1 -629 294 1 380 324 7 7 chr9 5306803 5306945 -136964499 + MIR SINE MIR 61 202 -60 1915 183 86 49 chr9 5306945 5307431 -136964013 - LTR54 LTR ERV1 0 510 7 228 333 68 8 chr9 5307702 5307819 -136963625 + MIR SINE MIR 48 146 -62 1322 189 58 0 chr9 5308330 5308616 -136962828 - AluJo SINE Alu 0 310 10 1118 239 79 31 chr9 5308617 5309035 -136962409 + LTR56 LTR ERV1 8 445 0 236 29 0 29 chr9 5309072 5309106 -136962338 + (GAAAA)n Simple_repeat Simple_repeat 4 36 0 2429 66 0 3 chr9 5309128 5309417 -136962027 + AluY SINE Alu 1 288 -23 25 0 0 0 chr9 5309671 5309696 -136961748 + AT_rich Low_complexity Low_complexity 1 25 0 478 240 145 12 chr9 5309889 5310131 -136961313 + L1M4 LINE L1 5124 5397 -749 * 2859 200 136 10 chr9 5310128 5310748 -136960696 + L1MA5 LINE L1 11 708 -6460 3717 202 39 6 chr9 5310778 5311677 -136959767 + L1MA5 LINE L1 2211 3139 -4029 1382 197 66 4 chr9 5311677 5311951 -136959493 + AluJo SINE Alu 1 291 -21 2717 161 49 60 chr9 5311958 5312089 -136959355 + L1MA5 LINE L1 4949 5080 -2087 6829 46 0 4 chr9 5312089 5313056 -136958388 - L1PA6 LINE L1 -6 6148 5143 2717 161 49 60 chr9 5313056 5313700 -136957744 + L1MA5 LINE L1 5080 5770 -1397 618 195 0 18 chr9 5313703 5313816 -136957628 + AluJo SINE Alu 24 134 -178 1890 143 40 13 chr9 5313822 5314936 -136956508 + L1MA5 LINE L1 5931 7141 -180 1318 119 40 44 chr9 5314936 5315162 -136956282 - AluJo SINE Alu -3 309 85 994 94 61 39 chr9 5315162 5315342 -136956102 + L1MA5 LINE L1 7136 7319 -2 1929 245 129 21 chr9 5315345 5316058 -136955386 + L1ME3A LINE L1 5377 6166 -4 2192 122 0 34 chr9 5316115 5316435 -136955009 + AluSx SINE Alu 1 309 -3 2267 99 3 3 chr9 5316635 5316937 -136954507 + AluSc SINE Alu 1 302 -7 439 260 95 22 chr9 5316942 5317203 -136954241 + L1MC4a LINE L1 5613 5819 -302 1978 140 0 10 chr9 5317643 5317943 -136953501 + AluJb SINE Alu 10 306 -6 5640 231 72 36 chr9 5317943 5318425 -136953019 + L1MD1 LINE L1 2376 2839 -3307 2320 103 3 0 chr9 5318425 5318725 -136952719 + AluSp SINE Alu 2 302 -11 5640 231 72 36 chr9 5318725 5319603 -136951841 + L1MD1 LINE L1 2839 3684 -2462 426 39 0 0 chr9 5319603 5319655 -136951789 + (TG)n Simple_repeat Simple_repeat 2 53 0 5640 231 72 36 chr9 5319655 5320165 -136951279 + L1MD1 LINE L1 3684 4329 -1817 471 48 0 0 chr9 5320165 5320227 -136951217 + (CA)n Simple_repeat Simple_repeat 2 63 0 5640 231 72 36 chr9 5320227 5320396 -136951048 + L1MD1 LINE L1 4329 4490 -1656 728 181 52 26 chr9 5320847 5321002 -136950442 - FRAM SINE Alu -9 167 9 298 120 0 40 chr9 5321046 5321096 -136950348 - AluJb SINE Alu -170 132 85 1467 173 3 90 chr9 5323103 5323435 -136948009 + AluJo SINE Alu 1 305 0 2626 187 129 44 chr9 5323733 5324026 -136947418 + L1MD1 LINE L1 4477 4744 -1498 1934 116 13 51 chr9 5324026 5324337 -136947107 + AluSx SINE Alu 1 299 -13 2626 187 129 44 chr9 5324337 5324771 -136946673 + L1MD1 LINE L1 4744 5140 -1102 1578 202 0 26 chr9 5324771 5325078 -136946366 + AluJo SINE Alu 1 299 -13 2626 187 129 44 chr9 5325078 5325298 -136946146 + L1MD1 LINE L1 5140 5340 -902 2233 110 3 3 chr9 5325298 5325598 -136945846 + AluSx SINE Alu 1 300 -12 2626 187 129 44 chr9 5325598 5325736 -136945708 + L1MD1 LINE L1 5340 5465 -777 2219 117 10 0 chr9 5325736 5326045 -136945399 + AluSx SINE Alu 1 312 0 2626 187 129 44 chr9 5326045 5326247 -136945197 + L1MD1 LINE L1 5465 5892 -350 38 0 0 0 chr9 5326528 5326566 -136944878 + AT_rich Low_complexity Low_complexity 1 38 0 2116 141 11 22 chr9 5326573 5326942 -136944502 + L1MD1 LINE L1 5878 6242 0 665 233 0 0 chr9 5326977 5327110 -136944334 + FLAM_C SINE Alu 1 133 0 484 179 14 28 chr9 5327110 5327255 -136944189 + GA-rich Low_complexity Low_complexity 3 145 0 189 0 0 0 chr9 5327255 5327276 -136944168 + (GAAAA)n Simple_repeat Simple_repeat 1 21 0 183 80 0 0 chr9 5327353 5327378 -136944066 + (A)n Simple_repeat Simple_repeat 1 25 0 196 250 269 19 chr9 5327791 5327899 -136943545 - MIR3 SINE MIR -60 148 14 1209 174 38 5 chr9 5328585 5328797 -136942647 - MER20 DNA MER1_type 0 219 1 309 283 83 17 chr9 5328838 5328958 -136942486 + L3 LINE CR1 1218 1345 -232 745 206 63 71 chr9 5328959 5329212 -136942232 - MIR SINE MIR 0 262 12 3363 136 28 16 chr9 5329299 5329551 -136941893 + L1PB4 LINE L1 5579 5826 -330 1588 197 28 14 chr9 5329551 5329840 -136941604 + AluJo SINE Alu 1 293 -19 3363 136 28 16 chr9 5329840 5330155 -136941289 + L1PB4 LINE L1 5826 6153 -3 180 305 67 9 chr9 5330364 5330469 -136940975 + L2 LINE L2 3200 3310 -3 217 274 14 14 chr9 5330552 5330625 -136940819 + L3 LINE CR1 1495 1567 -10 234 195 37 98 chr9 5330770 5330852 -136940592 - L1MC4 LINE L1 -1339 6703 6627 2136 102 3 20 chr9 5330868 5331172 -136940272 + AluSx SINE Alu 1 299 -13 21 36 0 0 chr9 5332983 5333011 -136938433 + GC_rich Low_complexity Low_complexity 1 28 0 1271 203 68 0 chr9 5334432 5334669 -136936775 - AluJb SINE Alu -59 253 1 2209 150 0 0 chr9 5334669 5335030 -136936414 - L1 LINE L1 -1142 5004 4644 16205 129 29 77 chr9 5335035 5336398 -136935046 - L1MA2 LINE L1 0 7723 6297 1304 141 0 0 chr9 5336398 5336583 -136934861 - AluSg/x SINE Alu -3 307 123 16205 129 29 77 chr9 5336583 5337191 -136934253 - L1MA2 LINE L1 -1426 6297 5662 1599 144 48 41 chr9 5337191 5337482 -136933962 - AluJb SINE Alu -9 303 11 16205 129 29 77 chr9 5337482 5337638 -136933806 - L1MA2 LINE L1 -2061 5662 5500 1696 158 92 0 chr9 5337638 5337910 -136933534 + AluSx SINE Alu 1 297 -15 16205 129 29 77 chr9 5337910 5339512 -136931932 - L1MA2 LINE L1 -2223 5500 3824 2777 90 0 37 chr9 5339512 5339584 -136931860 - THE1B LTR MaLR 0 364 291 2218 119 0 0 chr9 5339584 5339887 -136931557 + AluSg SINE Alu 1 303 -7 2777 90 0 37 chr9 5339887 5340192 -136931252 - THE1B LTR MaLR -73 291 1 16205 129 29 77 chr9 5340192 5340574 -136930870 - L1MA2 LINE L1 -3899 3824 3426 2947 73 0 5 chr9 5340574 5340942 -136930502 - L1PA8 LINE L1 0 6172 5807 16205 129 29 77 chr9 5340942 5342238 -136929206 - L1MA2 LINE L1 -4297 3426 2070 2262 114 0 3 chr9 5342238 5342545 -136928899 + AluSx SINE Alu 1 306 -6 16205 129 29 77 chr9 5342545 5342923 -136928521 - L1MA2 LINE L1 -5653 2070 1676 2290 105 14 0 chr9 5342923 5343218 -136928226 + AluSx SINE Alu 1 299 -13 16205 129 29 77 chr9 5343218 5344070 -136927374 - L1MA2 LINE L1 -6047 1676 1081 282 179 0 0 chr9 5344837 5344893 -136926551 + GA-rich Low_complexity Low_complexity 2 57 0 5690 178 47 6 chr9 5344909 5345939 -136925505 - L1MA2 LINE L1 -6489 1076 5 1823 131 3 91 chr9 5345956 5346285 -136925159 + AluSx SINE Alu 1 300 -12 2562 184 89 7 chr9 5346285 5346860 -136924584 + L1MB7 LINE L1 5487 6108 -76 1899 162 0 20 chr9 5346972 5347275 -136924169 - AluSq SINE Alu -16 297 1 1349 138 0 46 chr9 5347629 5347846 -136923598 - AluJb SINE Alu -105 207 1 320 146 0 0 chr9 5347852 5347907 -136923537 - MLT2B2 LTR ERVL -460 55 1 325 347 0 0 chr9 5347911 5348009 -136923435 - L1MC/D LINE L1 -2246 5562 5465 2117 131 0 13 chr9 5348115 5348428 -136923016 - AluSx SINE Alu -3 309 1 1237 124 27 5 chr9 5348523 5348708 -136922736 + AluSq SINE Alu 1 189 -124 262 185 0 37 chr9 5348711 5348819 -136922625 + GA-rich Low_complexity Low_complexity 2 105 0 1575 174 71 14 chr9 5349047 5349329 -136922115 - AluJo SINE Alu -4 298 1 1756 201 9 25 chr9 5349501 5349803 -136921641 - MLT2B1 LTR ERVL -111 409 61 1788 158 0 27 chr9 5349803 5350095 -136921349 - AluJb SINE Alu -28 284 1 1756 201 9 25 chr9 5350095 5350156 -136921288 - MLT2B1 LTR ERVL -459 61 1 528 296 0 0 chr9 5350167 5350302 -136921142 - L1MC/D LINE L1 -2253 5555 5421 1947 23 0 0 chr9 5350878 5351097 -136920347 - L1PA4 LINE L1 -160 5995 5777 1318 28 0 0 chr9 5351097 5351242 -136920202 + L1PA4 LINE L1 6003 6147 -8 2243 105 6 6 chr9 5351289 5351602 -136919842 - AluSq SINE Alu 0 313 1 41 36 0 0 chr9 5351608 5351663 -136919781 + AT_rich Low_complexity Low_complexity 1 55 0 1255 208 112 16 chr9 5351687 5351987 -136919457 + MLT1I LTR MaLR 92 407 -2 400 315 189 21 chr9 5352177 5352552 -136918892 - L3 LINE CR1 -1 1576 1139 2318 80 3 7 chr9 5352615 5352914 -136918530 + AluY SINE Alu 1 298 -13 247 173 49 25 chr9 5353434 5353515 -136917929 - L1ME4a LINE L1 -1 6120 6038 971 225 0 0 chr9 5353616 5353785 -136917659 + FAM SINE Alu 1 169 -6 230 200 67 53 chr9 5354018 5354093 -136917351 + L2 LINE L2 2316 2391 -923 1771 172 10 10 chr9 5354193 5354495 -136916949 + AluJo SINE Alu 1 302 -10 946 146 0 38 chr9 5354520 5354678 -136916766 - AluSg/x SINE Alu -20 292 141 2195 75 0 52 chr9 5354681 5354987 -136916457 - AluY SINE Alu -21 290 1 546 221 30 70 chr9 5355246 5355445 -136915999 - L2 LINE L2 -3 3310 3120 705 344 6 34 chr9 5355490 5355816 -136915628 - L2 LINE L2 -622 2692 2376 1660 98 0 0 chr9 5355841 5356046 -136915398 + AluSx SINE Alu 5 209 -103 720 112 0 0 chr9 5356085 5356183 -136915261 + AluSx SINE Alu 209 306 -6 312 109 43 0 chr9 5357653 5357699 -136913745 - MLT2D LTR ERVL 0 414 367 242 213 40 13 chr9 5357699 5357774 -136913670 + (TATG)n Simple_repeat Simple_repeat 1 77 0 1647 228 24 73 chr9 5357774 5358278 -136913166 - MLT2B1 LTR ERVL -41 479 1 429 278 23 8 chr9 5358439 5358572 -136912872 - L2 LINE L2 -955 2359 2225 759 192 8 0 chr9 5358599 5358719 -136912725 + AluJb SINE Alu 2 122 -190 28 0 0 0 chr9 5358790 5358818 -136912626 + AT_rich Low_complexity Low_complexity 1 28 0 266 335 73 35 chr9 5358818 5359078 -136912366 - L2 LINE L2 -1131 2183 1914 207 0 0 0 chr9 5359081 5359104 -136912340 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 392 208 0 0 chr9 5359358 5359430 -136912014 - MER94 DNA DNA -61 73 2 2224 237 94 5 chr9 5359710 5360318 -136911126 - L1MC4 LINE L1 -140 7902 7241 1180 183 76 55 chr9 5360332 5360622 -136910822 - L1MC4 LINE L1 -970 7072 6777 2347 91 0 3 chr9 5360625 5360923 -136910521 + AluSx SINE Alu 1 297 -15 2439 82 3 0 chr9 5360949 5361254 -136910190 + AluSc SINE Alu 1 306 -3 246 205 0 0 chr9 5361276 5361315 -136910129 + AluJ/monomer SINE Alu 1 39 -262 22 35 0 0 chr9 5362489 5362518 -136908926 + AT_rich Low_complexity Low_complexity 1 29 0 442 182 65 71 chr9 5362521 5362675 -136908769 - L1ME4a LINE L1 -4 6117 5965 1569 149 50 114 chr9 5362763 5362927 -136908517 + MLT1B LTR MaLR 1 174 -216 2154 130 0 0 chr9 5362927 5363228 -136908216 + AluSx SINE Alu 12 312 0 1569 149 50 114 chr9 5363228 5363465 -136907979 + MLT1B LTR MaLR 174 376 -14 1033 289 46 28 chr9 5363571 5364033 -136907411 - L1ME4a LINE L1 -188 5933 5468 2255 78 10 10 chr9 5364913 5365206 -136906238 + AluSq SINE Alu 1 293 -20 291 123 70 26 chr9 5365206 5365320 -136906124 + (TA)n Simple_repeat Simple_repeat 1 119 0 1937 103 31 78 chr9 5365483 5365675 -136905769 - AluSx SINE Alu -8 304 131 2179 60 43 0 chr9 5365675 5365984 -136905460 - AluY SINE Alu 0 311 1 1937 103 31 78 chr9 5365984 5366110 -136905334 - AluSx SINE Alu -181 131 1 409 274 51 0 chr9 5366305 5366422 -136905022 - MIR SINE MIR -27 235 113 1868 121 10 38 chr9 5367406 5367721 -136903723 - AluSx SINE Alu 0 307 1 711 286 122 61 chr9 5367741 5368120 -136903324 - L1ME4a LINE L1 -1792 4354 4000 2245 109 0 0 chr9 5368120 5368414 -136903030 + AluSx SINE Alu 1 294 -18 711 286 122 61 chr9 5368414 5368922 -136902522 - L1ME4a LINE L1 -2146 4000 3408 430 311 34 48 chr9 5369062 5369408 -136902036 + MLT1K LTR MaLR 225 586 -2 2214 100 3 3 chr9 5369775 5370074 -136901370 - AluSx SINE Alu -13 299 1 332 296 32 38 chr9 5370132 5370318 -136901126 - L1ME4a LINE L1 -3093 3053 2869 685 154 52 0 chr9 5370357 5370493 -136900951 - L1MC3 LINE L1 -1 7784 7642 1104 153 62 0 chr9 5370509 5370685 -136900759 - L1MC3 LINE L1 -427 7358 7172 1604 188 19 16 chr9 5370688 5370997 -136900447 - AluJo SINE Alu -2 310 1 354 231 9 37 chr9 5370997 5371105 -136900339 - MLT1F1 LTR MaLR -443 124 20 1389 194 70 39 chr9 5371105 5371461 -136899983 - L1MC3 LINE L1 -709 7076 6710 21 36 0 0 chr9 5371498 5371526 -136899918 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr9 5371545 5371577 -136899867 + AT_rich Low_complexity Low_complexity 1 32 0 44263 41 6 0 chr9 5371577 5377694 -136893750 - L1PA4 LINE L1 -3 6152 2 2103 117 7 7 chr9 5377696 5377994 -136893450 - AluSq SINE Alu -15 298 1 351 246 184 0 chr9 5378005 5378119 -136893325 - MLT1H LTR MaLR -65 484 350 2946 119 113 61 chr9 5378384 5378878 -136892566 - MLT2B1 LTR ERVL 0 520 1 255 313 10 20 chr9 5379662 5379761 -136891683 - MLT1-int LTR MaLR -1269 102 5 964 175 0 75 chr9 5381100 5381300 -136890144 + MER20 DNA MER1_type 1 185 -34 852 152 0 0 chr9 5381382 5381514 -136889930 + FRAM SINE Alu 33 164 -12 791 200 23 46 chr9 5381547 5381722 -136889722 - MER5B DNA MER1_type -1 177 7 297 178 208 20 chr9 5381728 5381829 -136889615 - MIR3 SINE MIR -48 160 41 26 82 0 0 chr9 5381931 5381992 -136889452 + AT_rich Low_complexity Low_complexity 1 61 0 3215 199 27 37 chr9 5382014 5382767 -136888677 + L1ME1 LINE L1 5408 6152 -14 231 295 147 0 chr9 5382774 5382903 -136888541 - HAL1b LINE L1 -6 1342 1195 1089 279 58 49 chr9 5382909 5383478 -136887966 - HAL1b LINE L1 -692 656 83 1358 188 19 16 chr9 5384360 5384616 -136886828 - MER58B DNA MER1_type -5 336 80 592 222 0 0 chr9 5384619 5384718 -136886726 + FLAM_A SINE Alu 1 99 -43 371 277 0 0 chr9 5384733 5384816 -136886628 - MER58B DNA MER1_type -258 83 1 1554 204 59 4 chr9 5385059 5385236 -136886208 - AluJo SINE Alu 0 308 108 189 0 0 0 chr9 5385236 5385257 -136886187 + (TTG)n Simple_repeat Simple_repeat 1 21 0 1554 204 59 4 chr9 5385257 5385372 -136886072 - AluJo SINE Alu -200 108 1 271 258 152 3 chr9 5385544 5385636 -136885808 + MER2 DNA MER2_type 2 104 -135 1362 130 0 5 chr9 5385716 5385908 -136885536 + AluSx SINE Alu 7 197 -115 567 216 203 0 chr9 5387294 5387442 -136884002 + MER5A DNA MER1_type 9 186 -3 701 232 19 19 chr9 5387459 5387516 -136883928 - MER5B DNA MER1_type -5 173 117 2282 116 0 3 chr9 5387516 5387818 -136883626 + AluSg SINE Alu 1 301 -9 701 232 19 19 chr9 5387818 5387915 -136883529 - MER5B DNA MER1_type -60 118 19 2501 77 0 0 chr9 5388096 5388394 -136883050 - AluY SINE Alu -13 298 1 3283 184 11 17 chr9 5388410 5389072 -136882372 - L1MB4 LINE L1 -6 6174 5517 1698 192 0 3 chr9 5390065 5390362 -136881082 - AluJb SINE Alu -16 296 1 1668 169 17 40 chr9 5390367 5390669 -136880775 - AluJo SINE Alu -17 295 1 605 137 56 96 chr9 5390879 5390995 -136880449 - MER53 DNA DNA 0 189 83 2193 117 0 3 chr9 5390995 5391294 -136880150 + AluY SINE Alu 2 299 -12 605 137 56 96 chr9 5391294 5391374 -136880070 - MER53 DNA DNA -106 83 1 295 253 214 17 chr9 5391816 5391994 -136879450 - LTR33 LTR ERVL -297 224 12 487 284 45 13 chr9 5392002 5392157 -136879287 - MIR SINE MIR -19 243 84 23 0 0 0 chr9 5392220 5392243 -136879201 + AT_rich Low_complexity Low_complexity 1 23 0 310 218 46 35 chr9 5392570 5392657 -136878787 - L3 LINE CR1 -7 1570 1483 43 35 0 0 chr9 5393297 5393354 -136878090 + AT_rich Low_complexity Low_complexity 1 57 0 487 211 37 9 chr9 5394036 5394145 -136877299 - MER81 DNA DNA 0 114 3 198 103 0 0 chr9 5394462 5394491 -136876953 + (CA)n Simple_repeat Simple_repeat 2 30 0 301 350 6 0 chr9 5394854 5395017 -136876427 + L1M4 LINE L1 2880 3043 -3103 303 28 0 0 chr9 5395072 5395108 -136876336 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 195 284 84 63 chr9 5395408 5395503 -136875941 - MIR SINE MIR -59 149 53 267 284 159 35 chr9 5395980 5396212 -136875232 - L3 LINE CR1 -19 1558 1298 697 223 0 0 chr9 5396813 5396934 -136874510 - FLAM_A SINE Alu -12 121 1 584 247 45 40 chr9 5396934 5397181 -136874263 + L1ME4a LINE L1 5588 5835 -286 300 215 50 91 chr9 5397760 5397881 -136873563 - MLT1H LTR MaLR 0 549 434 901 137 0 0 chr9 5398004 5398135 -136873309 + AluSg/x SINE Alu 178 308 -4 1923 140 0 47 chr9 5398598 5398919 -136872525 - AluSx SINE Alu -6 306 1 214 340 0 10 chr9 5401406 5401509 -136869935 + (CCA)n Simple_repeat Simple_repeat 1 102 0 2390 68 3 0 chr9 5401900 5402195 -136869249 - AluY SINE Alu 0 311 16 306 0 0 0 chr9 5402514 5402548 -136868896 + (TTTTG)n Simple_repeat Simple_repeat 1 34 0 1898 153 0 33 chr9 5402643 5402950 -136868494 - AluSx SINE Alu -15 297 1 1631 192 17 7 chr9 5403185 5403487 -136867957 - AluJb SINE Alu -7 305 1 524 240 6 55 chr9 5403490 5403673 -136867771 - L1ME2 LINE L1 -36 6128 5955 503 246 94 36 chr9 5403687 5403891 -136867553 - L1ME2 LINE L1 -633 5537 5289 792 206 12 0 chr9 5403891 5404051 -136867393 - FRAM SINE Alu -1 165 4 503 246 94 36 chr9 5404051 5404160 -136867284 - L1ME2 LINE L1 -881 5289 5188 397 154 22 33 chr9 5404166 5404257 -136867187 - Charlie1a DNA MER1_type -633 822 733 41880 39 3 0 chr9 5404263 5410395 -136861049 - L1PA4 LINE L1 -6 6149 8 462 194 31 0 chr9 5410402 5410500 -136860944 - Charlie1a DNA MER1_type -710 745 645 768 226 7 0 chr9 5410512 5410658 -136860786 + AluJb SINE Alu 148 294 -18 1321 189 61 10 chr9 5410688 5411000 -136860444 - Charlie1a DNA MER1_type -803 652 325 5081 153 19 38 chr9 5411001 5411740 -136859704 + L1MC2 LINE L1 5308 6023 -321 2340 78 0 10 chr9 5411740 5412046 -136859398 - AluY SINE Alu -8 303 1 5081 153 19 38 chr9 5412046 5412351 -136859093 + L1MC2 LINE L1 6023 6332 -12 1056 181 7 90 chr9 5412351 5412639 -136858805 - Charlie1a DNA MER1_type -1110 345 82 560 252 41 41 chr9 5412661 5413017 -136858427 - L1ME LINE L1 -4831 1249 892 2316 91 10 0 chr9 5413040 5413336 -136858108 + AluSx SINE Alu 1 299 -13 2892 9 0 0 chr9 5413354 5413670 -136857774 + AluYb8 SINE Alu 1 316 -2 799 147 55 10 chr9 5413815 5414007 -136857437 - L1MA7 LINE L1 -6 6285 6093 366 243 33 38 chr9 5414005 5414215 -136857229 - L1ME LINE L1 -5179 891 683 * 4867 180 25 26 chr9 5414252 5415206 -136856238 + L1 LINE L1 818 1770 -5398 1798 158 22 0 chr9 5415199 5415559 -136855885 + L1 LINE L1 5284 5651 -1516 * 680 122 65 0 chr9 5415564 5415687 -136855757 - L1MA4 LINE L1 -17 6283 6153 1327 275 43 37 chr9 5415693 5416184 -136855260 - L1M3b LINE L1 -5777 504 11 871 210 125 23 chr9 5416202 5416670 -136854774 - L1M4c LINE L1 -4137 2509 1914 674 144 0 0 chr9 5416691 5416795 -136854649 + AluSg/x SINE Alu 170 273 -39 789 157 31 6 chr9 5416842 5417001 -136854443 - L1MC/D LINE L1 -756 5577 5415 8869 155 91 86 chr9 5417006 5417074 -136854370 - L1MCa LINE L1 -3948 2478 2412 1877 183 0 16 chr9 5417074 5417391 -136854053 - AluJo SINE Alu 0 312 1 8869 155 91 86 chr9 5417391 5417865 -136853579 - L1MCa LINE L1 -4014 2412 1942 226 185 0 74 chr9 5417865 5417919 -136853525 - Alu SINE Alu -249 50 1 8869 155 91 86 chr9 5417919 5419816 -136851628 - L1MCa LINE L1 -4484 1942 56 3488 217 66 22 chr9 5419837 5421265 -136850179 - L1M4c LINE L1 -4726 1920 448 628 264 58 14 chr9 5421404 5421681 -136849763 - L1ME4a LINE L1 -296 5825 5537 442 306 153 6 chr9 5421785 5421942 -136849502 - MER5A DNA MER1_type -1 188 9 1153 122 0 43 chr9 5423155 5423343 -136848101 - AluSg/x SINE Alu -1 311 132 511 343 23 23 chr9 5424126 5424298 -136847146 + MER5B DNA MER1_type 3 174 -4 701 152 23 38 chr9 5424310 5424442 -136847002 + MER5B DNA MER1_type 1 130 -48 279 262 0 0 chr9 5424479 5424540 -136846904 + MER5B DNA MER1_type 118 178 0 599 207 200 0 chr9 5424613 5424763 -136846681 - MER5A DNA MER1_type 0 189 10 1777 139 89 4 chr9 5424921 5425202 -136846242 - AluSx SINE Alu -7 305 1 345 47 0 0 chr9 5425453 5425496 -136845948 + (TG)n Simple_repeat Simple_repeat 2 44 0 273 238 39 28 chr9 5425859 5426013 -136845431 - HAL1b LINE L1 -12 1336 1233 206 158 26 0 chr9 5426013 5426051 -136845393 + T-rich Low_complexity Low_complexity 2 40 0 2033 135 0 3 chr9 5426862 5427151 -136844293 + AluSx SINE Alu 6 293 -19 1453 250 69 40 chr9 5427371 5427919 -136843525 + L2 LINE L2 847 1410 -1904 686 286 57 74 chr9 5428135 5428307 -136843137 + LTR16B LTR ERVL 118 282 -182 3074 147 17 28 chr9 5428307 5428911 -136842533 - L1MB8 LINE L1 0 6178 5582 686 286 57 74 chr9 5428911 5429091 -136842353 + LTR16B LTR ERVL 282 464 0 2828 234 119 60 chr9 5429095 5430189 -136841255 + L2 LINE L2 1512 2669 -645 273 193 122 92 chr9 5430200 5430438 -136841006 + L1MC5 LINE L1 7639 7883 -78 377 268 151 34 chr9 5430446 5430466 -136840978 + HAL1b LINE L1 444 460 -888 3234 143 38 4 chr9 5430466 5430998 -136840446 + MER44D DNA MER2_type 1 605 0 377 268 151 34 chr9 5430998 5431044 -136840400 + HAL1b LINE L1 460 499 -849 2508 71 0 3 chr9 5431044 5431353 -136840091 + AluY SINE Alu 1 308 -3 377 268 151 34 chr9 5431353 5431576 -136839868 + HAL1b LINE L1 499 768 -580 2031 126 13 10 chr9 5431627 5431928 -136839516 - AluSx SINE Alu -9 303 2 324 288 65 52 chr9 5431962 5432115 -136839329 + MIR SINE MIR 18 172 -90 398 278 254 28 chr9 5432157 5432441 -136839003 - L2 LINE L2 -38 3275 2928 234 167 167 0 chr9 5432776 5432830 -136838614 - MIR SINE MIR -90 172 110 352 275 28 28 chr9 5433095 5433204 -136838240 - L2 LINE L2 0 3313 3205 1156 181 0 0 chr9 5433863 5434051 -136837393 - MER5A DNA MER1_type 0 189 2 555 312 73 12 chr9 5434308 5434555 -136836889 + MIR SINE MIR 1 262 0 397 327 31 6 chr9 5434550 5434709 -136836735 - MIR SINE MIR -26 236 74 * 225 356 27 0 chr9 5434939 5435012 -136836432 + L2 LINE L2 3195 3269 -3 351 295 89 85 chr9 5435067 5435677 -136835767 + L1ME4a LINE L1 5495 6121 0 2061 128 3 3 chr9 5437464 5437783 -136833661 - AluY SINE Alu 0 311 1 192 308 10 92 chr9 5438509 5438704 -136832740 - L3 LINE CR1 -708 869 691 433 260 122 25 chr9 5438736 5438932 -136832512 - MIR SINE MIR -42 220 6 216 320 48 29 chr9 5438933 5439036 -136832408 + MER5B DNA MER1_type 5 109 -69 253 307 122 42 chr9 5439075 5439264 -136832180 - L3 LINE CR1 -931 646 443 1429 245 49 56 chr9 5440378 5440892 -136830552 + L2 LINE L2 2804 3313 0 333 261 59 128 chr9 5441269 5441606 -136829838 + L1M2 LINE L1 662 975 -5874 319 289 99 99 chr9 5441506 5442234 -136829210 - L1M2 LINE L1 -5479 1370 776 * 1292 156 115 0 chr9 5443191 5443497 -136827947 - MER46B DNA MER2_type -8 228 1 248 289 256 39 chr9 5443915 5444000 -136827444 + MIR SINE MIR 9 74 -188 2358 103 0 0 chr9 5444000 5444310 -136827134 + AluSx SINE Alu 1 310 -2 248 289 256 39 chr9 5444310 5444404 -136827040 + MIR SINE MIR 74 227 -35 876 195 118 10 chr9 5444798 5445110 -136826334 + MER119 DNA MER1_type 137 583 0 300 320 80 8 chr9 5446751 5446876 -136824568 - MIR3 SINE MIR -9 199 66 185 328 40 34 chr9 5446893 5447070 -136824374 - L2 LINE L2 -889 2425 2248 538 297 36 5 chr9 5448288 5448480 -136822964 + L2 LINE L2 1471 1668 -1646 1451 207 134 88 chr9 5448491 5449036 -136822408 - MLT1G LTR MaLR -12 578 14 3242 138 71 3 chr9 5450295 5450861 -136820583 + MER6A DNA MER2_type 2 605 0 825 201 37 27 chr9 5450870 5451054 -136820390 - MER5A DNA MER1_type -3 175 1 911 239 4 39 chr9 5451062 5451292 -136820152 - MER58A DNA MER1_type 0 224 3 358 254 91 0 chr9 5451298 5451408 -136820036 + L2 LINE L2 1707 1826 -1488 289 303 175 20 chr9 5451459 5451710 -136819734 - L1MC/D LINE L1 -2105 5703 5414 1667 123 4 0 chr9 5452770 5453037 -136818407 + AluSq SINE Alu 58 325 0 25 31 0 0 chr9 5453059 5453091 -136818353 + AT_rich Low_complexity Low_complexity 1 32 0 21 57 0 0 chr9 5453299 5453334 -136818110 + AT_rich Low_complexity Low_complexity 1 35 0 1771 154 13 16 chr9 5453468 5453779 -136817665 - AluJb SINE Alu -2 310 1 2459 140 29 7 chr9 5453781 5454196 -136817248 - MSTA LTR MaLR -4 424 1 2421 87 0 0 chr9 5454802 5455101 -136816343 - AluSg SINE Alu -11 299 1 217 161 54 0 chr9 5455266 5455322 -136816122 + A-rich Low_complexity Low_complexity 2 60 0 2234 49 32 14 chr9 5455385 5455669 -136815775 - AluY SINE Alu -20 291 3 1213 79 57 6 chr9 5456050 5456227 -136815217 - MLT2A1 LTR ERVL -8 436 251 436 131 0 0 chr9 5456232 5456293 -136815151 - AluS SINE Alu -255 63 3 273 272 44 44 chr9 5456468 5456604 -136814840 - L1M4 LINE L1 -660 6220 6085 780 192 5 101 chr9 5457340 5457559 -136813885 - MER74B LTR ERVL -367 255 58 2738 222 52 15 chr9 5457560 5458376 -136813068 - L1M4 LINE L1 -1805 5043 4198 12915 161 20 45 chr9 5458482 5461113 -136810331 - L1M4 LINE L1 -4285 2564 1 1588 164 10 31 chr9 5461412 5461705 -136809739 - AluJb SINE Alu -25 287 1 26 0 0 0 chr9 5462063 5462089 -136809355 + AT_rich Low_complexity Low_complexity 1 26 0 1934 114 41 6 chr9 5462781 5463124 -136808320 - L1MA4A LINE L1 -138 6165 5811 1870 212 65 11 chr9 5463131 5463580 -136807864 - L1M2 LINE L1 -6366 483 11 315 169 0 0 chr9 5463585 5463644 -136807800 - L1M4 LINE L1 -5615 927 869 2396 86 0 0 chr9 5463747 5464037 -136807407 + AluY SINE Alu 1 290 -21 891 279 75 83 chr9 5464152 5464984 -136806460 - L1M4 LINE L1 -5716 826 2 214 172 0 35 chr9 5465226 5465284 -136806160 + CT-rich Low_complexity Low_complexity 2 57 0 1769 156 52 0 chr9 5465302 5465591 -136805853 - AluSx SINE Alu -8 304 1 369 263 95 22 chr9 5465832 5466106 -136805338 - L1M4 LINE L1 -2984 3864 3571 226 222 0 0 chr9 5466470 5466515 -136804929 + (TG)n Simple_repeat Simple_repeat 2 46 0 468 267 119 9 chr9 5466585 5466795 -136804649 - Charlie2 DNA MER1_type 0 2862 2630 14814 131 21 12 chr9 5466975 5469371 -136802073 - Tigger1 DNA MER2_type -2 2416 1 437 266 101 60 chr9 5470236 5470435 -136801009 - MIR SINE MIR -42 220 14 26 0 0 0 chr9 5470619 5470645 -136800799 + AT_rich Low_complexity Low_complexity 1 26 0 340 312 72 38 chr9 5470653 5470890 -136800554 + L1 LINE L1 4268 4512 -1634 40219 49 11 1 chr9 5471544 5477638 -136793806 + L1PA4 LINE L1 1 6151 -4 1046 237 112 5 chr9 5477945 5478312 -136793132 + L1MB7 LINE L1 3365 3770 -2376 1170 179 8 49 chr9 5478312 5478558 -136792886 - MER46A DNA MER2_type 0 236 1 5796 223 31 14 chr9 5478563 5478991 -136792453 + L1MB7 LINE L1 3775 4194 -1952 1924 169 33 0 chr9 5478991 5479323 -136792121 - MER2 DNA MER2_type -1 343 1 5796 223 31 14 chr9 5479323 5480493 -136790951 + L1MB7 LINE L1 4194 5400 -746 2834 19 0 0 chr9 5481893 5482209 -136789235 - AluYb8 SINE Alu -2 316 1 332 252 89 158 chr9 5482446 5482871 -136788573 - L1M4 LINE L1 -5907 942 547 2513 169 22 3 chr9 5483118 5483748 -136787696 + L1MB7 LINE L1 5386 6175 -9 4184 168 59 33 chr9 5485169 5486475 -136784969 - L1MB3 LINE L1 -3 6180 4845 1192 171 9 57 chr9 5487445 5487673 -136783771 - AluJo SINE Alu -95 217 1 2260 111 0 3 chr9 5487906 5488213 -136783231 - AluSg SINE Alu -4 306 1 2106 163 3 9 chr9 5489450 5489799 -136781645 - MER7A DNA MER2_type 0 346 2 1547 164 95 0 chr9 5490081 5490343 -136781101 - AluJo SINE Alu -25 287 1 1221 175 69 0 chr9 5490708 5490925 -136780519 - MER46A DNA MER2_type -3 233 2 328 369 6 18 chr9 5491155 5491323 -136780121 + MER5A DNA MER1_type 2 167 -22 * 504 271 7 21 chr9 5491187 5491331 -136780113 - MER5A DNA MER1_type -22 167 26 277 208 0 0 chr9 5491753 5491801 -136779643 - L2 LINE L2 0 3313 3266 4268 186 37 13 chr9 5492245 5493296 -136778148 - L1MB7 LINE L1 -1 6183 5110 455 305 140 5 chr9 5493308 5493508 -136777936 - L2 LINE L2 -1391 1923 1697 302 320 47 62 chr9 5496353 5496481 -136774963 + L2 LINE L2 3146 3271 -1 337 304 49 10 chr9 5496623 5496725 -136774719 - MIR SINE MIR -139 123 18 4711 160 44 21 chr9 5497147 5497349 -136774095 - L1MB2 LINE L1 0 6171 5975 2181 109 7 3 chr9 5497349 5497653 -136773791 - AluSg SINE Alu -5 305 1 4711 160 44 21 chr9 5497653 5497980 -136773464 - L1MB2 LINE L1 -196 5975 5657 1810 137 64 20 chr9 5497980 5498337 -136773107 - THE1C LTR MaLR -2 373 1 4711 160 44 21 chr9 5498337 5498840 -136772604 - L1MB2 LINE L1 -514 5657 5121 2688 253 56 18 chr9 5498846 5499705 -136771739 - L1ME3 LINE L1 -8 6154 5263 14737 127 31 16 chr9 5499738 5501850 -136769594 - Tigger1 DNA MER2_type -1 2417 265 1403 205 0 0 chr9 5501850 5502089 -136769355 - MER8 DNA MER2_type 0 239 1 14737 127 31 16 chr9 5502089 5502358 -136769086 - Tigger1 DNA MER2_type -2153 265 1 474 278 124 36 chr9 5502386 5502692 -136768752 - L1MC/D LINE L1 -2179 5629 5297 479 262 78 85 chr9 5502871 5503344 -136768100 - HAL1 LINE L1 -327 2180 1711 2131 101 0 0 chr9 5503648 5503924 -136767520 + AluSg SINE Alu 1 276 -34 1969 141 14 0 chr9 5504028 5504325 -136767119 + AluSx SINE Alu 9 309 -3 1109 174 47 0 chr9 5505238 5505428 -136766016 + MER3 DNA MER1_type 2 200 -9 223 409 64 0 chr9 5505806 5505916 -136765528 - L2 LINE L2 0 3272 3156 30 0 0 0 chr9 5506741 5506771 -136764673 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr9 5507245 5507268 -136764176 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr9 5507422 5507447 -136763997 + AT_rich Low_complexity Low_complexity 1 25 0 2282 92 0 25 chr9 5507644 5507961 -136763483 + AluSc SINE Alu 1 309 0 21 57 0 0 chr9 5508124 5508159 -136763285 + AT_rich Low_complexity Low_complexity 1 35 0 383 349 54 46 chr9 5508224 5508541 -136762903 - L2 LINE L2 -219 3053 2735 240 211 18 0 chr9 5510118 5510175 -136761269 + L1MEd LINE L1 115 172 -5947 709 217 119 7 chr9 5510182 5510325 -136761119 + MER8 DNA MER2_type 1 159 -80 26 30 0 0 chr9 5510326 5510359 -136761085 + AT_rich Low_complexity Low_complexity 1 33 0 238 173 39 0 chr9 5510359 5510411 -136761033 - Alu SINE Alu -5 297 244 502 156 0 0 chr9 5510476 5510553 -136760891 - Tigger2 DNA MER2_type -2641 77 1 1912 282 74 33 chr9 5510614 5511497 -136759947 + L1MEd LINE L1 238 1156 -4963 420 305 0 0 chr9 5511545 5511650 -136759794 - MIR SINE MIR -146 116 12 756 275 78 29 chr9 5511685 5511929 -136759515 - MIR SINE MIR 0 262 7 13971 129 39 30 chr9 5514055 5516451 -136754993 + Tigger1 DNA MER2_type 1 2417 -1 24 53 0 0 chr9 5516694 5516732 -136754712 + AT_rich Low_complexity Low_complexity 1 38 0 32 43 0 0 chr9 5516971 5517017 -136754427 + AT_rich Low_complexity Low_complexity 1 46 0 25 31 0 0 chr9 5517156 5517188 -136754256 + AT_rich Low_complexity Low_complexity 1 32 0 719 198 21 88 chr9 5519409 5519601 -136751843 + AluJb SINE Alu 114 292 -20 431 320 47 13 chr9 5519662 5519842 -136751602 + MIR3 SINE MIR 1 185 -23 2617 46 0 0 chr9 5520660 5520967 -136750477 - AluY SINE Alu -4 307 1 501 183 72 46 chr9 5521758 5521808 -136749636 + MER103 DNA DNA 10 57 -109 3435 194 58 53 chr9 5521808 5522772 -136748672 - LTR5 LTR ERVK 0 969 1 501 183 72 46 chr9 5522772 5522874 -136748570 + MER103 DNA DNA 57 166 0 320 171 260 14 chr9 5523672 5523818 -136747626 - L1ME4a LINE L1 -202 5919 5738 21 0 0 0 chr9 5524255 5524276 -136747168 + AT_rich Low_complexity Low_complexity 1 21 0 30 0 0 0 chr9 5524305 5524335 -136747109 + AT_rich Low_complexity Low_complexity 1 30 0 311 53 0 0 chr9 5525839 5525877 -136745567 - THE1-int LTR MaLR -125 1455 1418 26 0 0 0 chr9 5525891 5525917 -136745527 + GC_rich Low_complexity Low_complexity 1 26 0 2147 101 70 20 chr9 5526890 5527247 -136744197 - THE1C LTR MaLR 0 375 1 431 273 101 62 chr9 5527346 5527627 -136743817 + L1ME LINE L1 5407 5708 -413 22 0 0 0 chr9 5527709 5527731 -136743713 + AT_rich Low_complexity Low_complexity 1 22 0 408 323 57 6 chr9 5527846 5528004 -136743440 - MIR SINE MIR -79 183 18 1531 214 24 40 chr9 5528361 5528739 -136742705 - MLT1A2 LTR MaLR -2 372 1 2432 84 0 0 chr9 5529030 5529338 -136742106 + AluY SINE Alu 2 309 -2 22 0 0 0 chr9 5529371 5529393 -136742051 + AT_rich Low_complexity Low_complexity 1 22 0 2303 70 0 10 chr9 5538470 5538768 -136732676 - AluY SINE Alu -16 295 1 22 35 0 0 chr9 5539251 5539280 -136732164 + AT_rich Low_complexity Low_complexity 1 29 0 34787 90 17 12 chr9 5540688 5546808 -136724636 + L1PA6 LINE L1 12 6146 -8 252 0 0 0 chr9 5552964 5552992 -136718452 + (T)n Simple_repeat Simple_repeat 1 28 0 225 0 0 0 chr9 5553197 5553222 -136718222 + (A)n Simple_repeat Simple_repeat 1 25 0 225 0 0 0 chr9 5554705 5554730 -136716714 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 6795 66 9 6 chr9 5554730 5555847 -136715597 + L1PA7 LINE L1 5030 6154 0 702 275 140 5 chr9 5555852 5556059 -136715385 - MIR SINE MIR -10 252 18 21 36 0 0 chr9 5556122 5556150 -136715294 + AT_rich Low_complexity Low_complexity 1 28 0 222 310 0 0 chr9 5556410 5556468 -136714976 - L2 LINE L2 -12 3301 3244 712 153 19 149 chr9 5556762 5557030 -136714414 + MLT1A1 LTR MaLR 116 348 -17 238 280 75 11 chr9 5557086 5557179 -136714265 - L2 LINE L2 -548 2766 2668 408 198 123 0 chr9 5557200 5557306 -136714138 + Charlie1 DNA MER1_type 52 170 -2591 * 1268 171 58 3 chr9 5557303 5557595 -136713849 + Charlie1 DNA MER1_type 2454 2761 0 2637 192 98 143 chr9 5557668 5557868 -136713576 - Charlie2a DNA MER1_type 0 2862 2655 563 88 0 0 chr9 5557868 5557948 -136713496 + Alu SINE Alu 217 296 -15 2637 192 98 143 chr9 5557948 5559754 -136711690 - Charlie2a DNA MER1_type -207 2655 871 1148 184 37 110 chr9 5559754 5560128 -136711316 - MLT1A1 LTR MaLR 0 365 19 328 342 167 30 chr9 5560511 5560892 -136710552 - L2 LINE L2 -773 2541 2077 3515 138 60 18 chr9 5560892 5561573 -136709871 - MER67C LTR ERV1 0 710 1 328 342 167 30 chr9 5561573 5561682 -136709762 - L2 LINE L2 -1237 2077 1984 694 202 8 0 chr9 5562337 5562461 -136708983 - MER68 LTR ERV1 0 562 438 * 1176 166 85 0 chr9 5562458 5562681 -136708763 - MER68 LTR ERV1 -320 242 1 3903 154 32 11 chr9 5562936 5563662 -136707782 - L1PB4 LINE L1 -3 6153 5413 1914 193 21 5 chr9 5563673 5564247 -136707197 - L1PB4 LINE L1 -751 5395 4887 1769 146 3 6 chr9 5564245 5564574 -136706870 + L1PB4 LINE L1 4556 4883 -1263 * 529 265 108 79 chr9 5564881 5565642 -136705802 - L1ME4a LINE L1 -74 6047 5258 369 0 0 0 chr9 5567853 5567894 -136703550 + (TG)n Simple_repeat Simple_repeat 2 42 0 23 86 0 0 chr9 5569646 5569704 -136701740 + AT_rich Low_complexity Low_complexity 1 58 0 2610 42 0 3 chr9 5570492 5570801 -136700643 - AluY SINE Alu -3 308 1 2413 79 0 7 chr9 5571208 5571512 -136699932 - AluSq SINE Alu -11 302 1 438 189 175 63 chr9 5572824 5573030 -136698414 + MER106A DNA MER1_type 7 235 -1 10756 124 20 18 chr9 5573206 5575130 -136696314 + L1PA7 LINE L1 1383 4098 -3486 18309 79 10 1 chr9 5575132 5578512 -136692932 + L1PA7 LINE L1 4161 7588 -4 21 0 0 0 chr9 5578676 5578697 -136692747 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 5578815 5578837 -136692607 + AT_rich Low_complexity Low_complexity 1 22 0 287 194 126 39 chr9 5578970 5579073 -136692371 - L1M4 LINE L1 -699 5475 5364 318 308 42 30 chr9 5579401 5579581 -136691863 - MIR3 SINE MIR -23 185 1 282 330 93 22 chr9 5580239 5580421 -136691023 + L2 LINE L2 2590 2784 -530 19260 173 38 14 chr9 5580488 5583436 -136688008 - L1PA13 LINE L1 -2 6812 3936 2237 108 3 0 chr9 5583436 5583731 -136687713 - AluSx SINE Alu -16 296 1 19260 173 38 14 chr9 5583731 5586452 -136684992 - L1PA13 LINE L1 -2878 3936 890 1855 263 58 0 chr9 5586466 5586895 -136684549 - L1PA13 LINE L1 -5950 837 384 2671 120 5 2 chr9 5586922 5587330 -136684114 - L1PA12 LINE L1 -5579 2002 1594 2294 260 60 7 chr9 5587342 5588115 -136683329 - L1PA12 LINE L1 -4509 3072 2259 321 202 36 12 chr9 5588417 5588501 -136682943 - L1PA12 LINE L1 -5412 2169 2084 584 327 148 26 chr9 5588755 5589174 -136682270 - L1PA12 LINE L1 -6317 1257 788 4266 184 50 11 chr9 5589198 5590619 -136680825 + L1PB4 LINE L1 4321 5809 -347 315 0 0 0 chr9 5590619 5590654 -136680790 + (CA)n Simple_repeat Simple_repeat 2 36 0 4266 184 50 11 chr9 5590654 5591004 -136680440 + L1PB4 LINE L1 5809 6144 -12 251 239 71 9 chr9 5591010 5591123 -136680321 + HsTC2 DNA Tc2 251 370 -1528 1467 233 118 31 chr9 5591179 5592515 -136678929 + L1MEc LINE L1 1850 3286 -2929 4580 129 16 0 chr9 5592521 5593256 -136678188 + L1P3 LINE L1 2 748 -5713 9384 62 1 1 chr9 5593256 5595260 -136676184 + L1PA4 LINE L1 4145 6155 0 3057 52 0 5 chr9 5595318 5595706 -136675738 + L1PA7 LINE L1 5769 6154 0 2014 215 179 97 chr9 5595706 5596691 -136674753 + L1MEc LINE L1 3281 4184 -2031 740 142 17 0 chr9 5596691 5596811 -136674633 + AluSg/x SINE Alu 185 306 -6 2014 215 179 97 chr9 5596811 5597418 -136674026 + L1MEc LINE L1 4184 5133 -1082 9277 162 25 27 chr9 5597426 5599662 -136671782 + L1M1 LINE L1 1931 4166 -3399 2255 101 0 13 chr9 5599662 5599969 -136671475 + AluSq SINE Alu 1 303 -10 9277 162 25 27 chr9 5599969 5601593 -136669851 + L1M1 LINE L1 4166 5792 -1773 1608 141 42 15 chr9 5601594 5601857 -136669587 + AluJo SINE Alu 25 294 -18 975 188 11 21 chr9 5602851 5603037 -136668407 - MER5A DNA MER1_type -1 188 5 3913 173 58 13 chr9 5604260 5604698 -136666746 - L1MB7 LINE L1 -20 6164 5747 2147 122 0 10 chr9 5604698 5605002 -136666442 + AluSx SINE Alu 1 301 -11 3913 173 58 13 chr9 5605002 5605397 -136666047 - L1MB7 LINE L1 -437 5747 5294 212 0 36 0 chr9 5605974 5606002 -136665442 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 359 298 135 7 chr9 5606178 5606614 -136664830 + L1 LINE L1 3196 3687 -2459 21544 170 43 24 chr9 5606735 5608700 -136662744 + L1PA10 LINE L1 10 1937 -4546 2116 121 3 3 chr9 5608700 5608997 -136662447 - AluSq SINE Alu -15 298 2 21544 170 43 24 chr9 5608997 5612419 -136659025 + L1PA10 LINE L1 1937 5659 -824 2228 118 3 0 chr9 5612419 5612716 -136658728 + AluSx SINE Alu 1 298 -14 21544 170 43 24 chr9 5612716 5613557 -136657887 + L1PA10 LINE L1 5659 6483 0 4023 253 117 49 chr9 5613644 5614712 -136656732 + L2 LINE L2 1361 2355 -958 2403 73 0 3 chr9 5614712 5615012 -136656432 - AluY SINE Alu -12 299 1 4023 253 117 49 chr9 5615012 5615292 -136656152 + L2 LINE L2 2355 2614 -699 3612 123 13 8 chr9 5615292 5615814 -136655630 + MER1A DNA MER1_type 3 527 0 4023 253 117 49 chr9 5615814 5616290 -136655154 + L2 LINE L2 2614 3312 -1 244 303 40 0 chr9 5616385 5616484 -136654960 + L1 LINE L1 3987 4089 -2057 331 226 99 23 chr9 5616552 5616773 -136654671 + L1 LINE L1 4231 4468 -1678 3533 226 62 51 chr9 5616859 5617638 -136653806 + L1PA12 LINE L1 4 802 -6779 2230 127 3 0 chr9 5617638 5617945 -136653499 - AluSx SINE Alu -2 310 3 3533 226 62 51 chr9 5617945 5618351 -136653093 + L1PA12 LINE L1 802 1202 -6379 6383 79 34 0 chr9 5618355 5619791 -136651653 + L1PA11 LINE L1 4716 6174 0 5784 50 143 60 chr9 5619825 5620897 -136650547 + MER11A LTR ERVK 1 1266 0 342 324 115 61 chr9 5620899 5621341 -136650103 + L1ME3A LINE L1 4581 5046 -1100 568 325 99 11 chr9 5621486 5622036 -136649408 + L1ME3A LINE L1 5256 5847 -323 466 259 114 6 chr9 5622206 5622364 -136649080 + L2 LINE L2 3135 3309 -4 25 0 0 0 chr9 5622989 5623014 -136648430 + AT_rich Low_complexity Low_complexity 1 25 0 474 247 213 7 chr9 5623589 5623739 -136647705 + MER5A DNA MER1_type 9 189 0 197 167 24 0 chr9 5623918 5623960 -136647484 - L2 LINE L2 0 3313 3271 394 181 26 60 chr9 5624564 5624680 -136646764 + MER45 DNA AcHobo 1463 1574 -7 300 313 134 18 chr9 5624741 5624853 -136646591 - L2 LINE L2 -206 3066 2942 190 278 28 28 chr9 5625892 5625964 -136645480 + L2 LINE L2 3161 3232 -40 880 214 54 17 chr9 5626761 5627055 -136644389 + L1M1 LINE L1 3358 3662 -3903 2239 219 33 10 chr9 5627061 5627389 -136644055 + L1M1 LINE L1 4027 4377 -3188 2099 122 0 3 chr9 5627389 5627677 -136643767 + AluSx SINE Alu 1 287 -25 2239 219 33 10 chr9 5627677 5627955 -136643489 + L1M1 LINE L1 4377 4647 -2918 1882 255 49 89 chr9 5627950 5628976 -136642468 - L1P3 LINE L1 -5467 994 10 * 352 58 0 39 chr9 5629107 5629159 -136642285 + THE1B LTR MaLR 1 50 -314 1745 224 81 35 chr9 5629620 5630285 -136641159 - L1MD1 LINE L1 -5 6237 5542 912 278 67 9 chr9 5630417 5630853 -136640591 + MLT1C LTR MaLR 1 461 -6 233 200 0 0 chr9 5631358 5631408 -136640036 + (CAGAGA)n Simple_repeat Simple_repeat 3 52 0 4717 129 6 0 chr9 5636137 5636864 -136634580 - L1PA16 LINE L1 -4 6162 5432 2829 258 50 30 chr9 5637754 5638991 -136632453 - L1MD1 LINE L1 -872 5274 4013 1162 238 84 35 chr9 5639223 5639685 -136631759 - L1MD1 LINE L1 0 6242 5758 416 341 17 12 chr9 5639808 5639981 -136631463 + MER5B DNA MER1_type 5 178 0 351 0 0 0 chr9 5640301 5640340 -136631104 + (TCTA)n Simple_repeat Simple_repeat 4 42 0 22 0 0 0 chr9 5640926 5640948 -136630496 + AT_rich Low_complexity Low_complexity 1 22 0 2858 122 7 5 chr9 5643733 5644160 -136627284 - MSTA LTR MaLR 0 428 1 380 305 19 0 chr9 5644303 5644457 -136626987 - MER5B DNA MER1_type -21 157 1 232 229 33 0 chr9 5645480 5645541 -136625903 - MER5B DNA MER1_type -33 145 83 243 71 214 0 chr9 5645544 5645586 -136625858 + LTR50 LTR ERVL 272 322 -473 595 215 19 65 chr9 5645736 5645997 -136625447 + L1MA4 LINE L1 3210 3458 -4107 * 11406 169 21 41 chr9 5645994 5646555 -136624889 + L1MA4 LINE L1 4156 4727 -2992 2229 114 0 7 chr9 5646555 5646862 -136624582 + AluSx SINE Alu 3 307 -5 11406 169 21 41 chr9 5646862 5649937 -136621507 + L1MA4 LINE L1 4727 7712 -7 900 125 33 20 chr9 5651522 5651674 -136619770 - MSTC LTR MaLR -273 155 2 2030 249 69 25 chr9 5651836 5652530 -136618914 + L1MD1 LINE L1 5509 6233 -9 230 207 0 0 chr9 5652533 5652591 -136618853 + L1MA8 LINE L1 5291 5348 -823 422 163 12 12 chr9 5652602 5652688 -136618756 + L1MB3 LINE L1 6081 6166 -17 1786 178 55 17 chr9 5652708 5653125 -136618319 + L1MA8 LINE L1 5843 6275 -16 356 264 91 30 chr9 5653132 5653363 -136618081 + L1M4 LINE L1 5 249 -6293 356 222 60 26 chr9 5653636 5653753 -136617691 + L1M4 LINE L1 802 922 -5724 231 229 0 0 chr9 5653805 5653853 -136617591 + L1M4 LINE L1 1412 1459 -5116 1752 136 0 4 chr9 5653855 5654112 -136617332 - AluSx SINE Alu -8 304 49 1253 289 43 36 chr9 5654148 5654678 -136616766 + L1M3e LINE L1 1439 1972 -5058 * 5375 48 12 2 chr9 5654677 5655580 -136615864 + L1PA7 LINE L1 5020 5928 -226 1077 137 11 42 chr9 5655580 5655770 -136615674 - THE1B LTR MaLR -180 184 1 1726 150 13 37 chr9 5656282 5656582 -136614862 - AluJo SINE Alu -19 293 1 24 91 0 0 chr9 5657059 5657125 -136614319 + AT_rich Low_complexity Low_complexity 1 66 0 357 326 17 34 chr9 5658130 5658308 -136613136 - MER5B DNA MER1_type -3 175 1 2561 184 8 6 chr9 5658420 5658893 -136612551 + MER101 LTR ERV1 1 474 0 1428 219 66 22 chr9 5658932 5659385 -136612059 + L1MD1 LINE L1 5770 6242 0 2409 228 78 50 chr9 5659655 5660018 -136611426 + L1MB2 LINE L1 4076 4427 -1719 3654 88 32 4 chr9 5660018 5660515 -136610929 + MER9 LTR ERVK 1 511 0 2409 228 78 50 chr9 5660515 5661124 -136610320 + L1MB2 LINE L1 4427 5075 -1071 228 265 163 25 chr9 5661169 5661365 -136610079 + L1MB2 LINE L1 5052 5274 -872 23 0 0 0 chr9 5661697 5661720 -136609724 + AT_rich Low_complexity Low_complexity 1 23 0 21339 173 39 18 chr9 5661911 5667651 -136603793 + L1PA11 LINE L1 914 7609 -3 441 0 0 0 chr9 5667823 5667872 -136603572 + (TG)n Simple_repeat Simple_repeat 1 49 0 1586 128 28 17 chr9 5668374 5668663 -136602781 + LTR22B LTR ERVK 1 292 -200 12290 97 10 1 chr9 5668663 5670320 -136601124 + HERVK22 LTR ERVK 5165 6837 0 2594 140 30 34 chr9 5670320 5670814 -136600630 + LTR22B LTR ERVK 1 492 0 1274 139 29 8 chr9 5673816 5674054 -136597390 + L1MA4 LINE L1 6046 6288 -12 192 326 58 0 chr9 5675335 5675421 -136596023 - L2 LINE L2 -23 3290 3200 1005 214 150 20 chr9 5675724 5676070 -136595374 - MLT1C LTR MaLR -17 450 60 1793 191 42 35 chr9 5676076 5676501 -136594943 - MSTC LTR MaLR 0 428 1 1433 233 50 94 chr9 5676658 5677372 -136594072 + L1MD1 LINE L1 5546 6228 -14 3467 227 38 15 chr9 5677380 5678223 -136593221 + L1MB2 LINE L1 5291 6152 -19 1937 161 79 12 chr9 5678251 5678668 -136592776 + L1MA8 LINE L1 5843 6287 -4 321 254 85 34 chr9 5678674 5678907 -136592537 + L1M4c LINE L1 467 955 -6082 423 0 0 0 chr9 5679098 5679145 -136592299 + (CA)n Simple_repeat Simple_repeat 2 48 0 366 301 175 6 chr9 5679228 5679554 -136591890 + L1M4c LINE L1 1266 1646 -5462 7963 14 0 0 chr9 5679571 5680827 -136590617 - L1HS LINE L1 0 6155 4900 * 18776 24 0 0 chr9 5680822 5683054 -136588390 + L1HS LINE L1 2673 4904 -1242 443 217 24 63 chr9 5683049 5683256 -136588188 + L1M4c LINE L1 1629 1827 -5281 * 1282 313 47 5 chr9 5683251 5683999 -136587445 + L1 LINE L1 3547 4325 -1821 2742 280 44 26 chr9 5684001 5686176 -136585268 + L1M3c LINE L1 1224 3166 -3940 7145 50 0 0 chr9 5686176 5687186 -136584258 - L1PA7 LINE L1 -5 6149 5139 2742 280 44 26 chr9 5687186 5687356 -136584088 + L1M3c LINE L1 3166 3332 -3774 988 173 42 0 chr9 5687390 5687581 -136583863 + L1PB1 LINE L1 2 200 -6663 11272 131 70 16 chr9 5687581 5690800 -136580644 + L1PB1 LINE L1 634 3678 -3189 339 25 0 0 chr9 5690800 5690840 -136580604 + (CA)n Simple_repeat Simple_repeat 2 41 0 11272 131 70 16 chr9 5690840 5691188 -136580256 + L1PB1 LINE L1 3678 6866 -1 2265 252 26 6 chr9 5691198 5691881 -136579563 + L1M3c LINE L1 3348 4044 -3062 760 271 80 3 chr9 5691873 5692246 -136579198 + L1 LINE L1 2810 3211 -2935 * 5292 166 26 7 chr9 5692249 5693980 -136577464 - L1PB4 LINE L1 -12 6847 4892 12912 155 23 31 chr9 5693984 5697371 -136574073 - L1PA6 LINE L1 0 6154 2789 454 128 23 23 chr9 5697382 5697468 -136573976 - L1PB4 LINE L1 -3362 3487 3402 17886 118 37 20 chr9 5697468 5698670 -136572774 - MER57B-int LTR ERV1 -744 6793 5613 6710 112 27 18 chr9 5698670 5699731 -136571713 + MER11C LTR ERVK 1 1071 0 17886 118 37 20 chr9 5699731 5701665 -136569779 - MER57B-int LTR ERV1 -1924 5613 1276 889 124 29 0 chr9 5701675 5701812 -136569632 - MER57B-int LTR ERV1 -4616 2921 2781 699 157 0 9 chr9 5701808 5701923 -136569521 - MER57B-int LTR ERV1 -3929 2017 1904 * 3604 135 45 10 chr9 5701924 5702494 -136568950 - MER57B-int LTR ERV1 -4231 3585 3037 204 40 0 0 chr9 5702494 5702519 -136568925 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 3604 135 45 10 chr9 5702519 5702722 -136568722 - MER57B-int LTR ERV1 -4779 3037 648 1264 109 0 0 chr9 5702714 5702889 -136568555 - MER57B-int LTR ERV1 -6570 967 793 * 4334 130 24 13 chr9 5702877 5703554 -136567890 - MER57B-int LTR ERV1 -6853 684 1 2523 138 35 19 chr9 5703554 5703981 -136567463 - MER57B LTR ERV1 0 434 1 2519 255 60 64 chr9 5703982 5706064 -136565380 - L1PB4 LINE L1 -3674 3175 987 981 313 26 55 chr9 5706170 5706861 -136564583 - L1PB4 LINE L1 -6176 673 3 3646 180 41 51 chr9 5706862 5707891 -136563553 - L1MCa LINE L1 -4588 1838 731 399 248 19 9 chr9 5708954 5709059 -136562385 - LTR39 LTR ERV1 -81 702 597 1092 198 18 94 chr9 5709137 5709476 -136561968 - LTR39 LTR ERV1 -467 316 4 764 299 43 4 chr9 5709616 5709850 -136561594 - MIR SINE MIR 0 262 20 6105 140 11 25 chr9 5710320 5711344 -136560100 + MSTA-int LTR MaLR 572 1580 0 1764 150 203 11 chr9 5711344 5711703 -136559741 + MSTA LTR MaLR 1 428 0 5384 167 33 10 chr9 5712295 5713324 -136558120 - Ricksha_b DNA DNA -13 1241 240 609 197 71 0 chr9 5713335 5713462 -136557982 - Ricksha_b DNA DNA -1117 137 2 3093 235 44 20 chr9 5714100 5714892 -136556552 + L1MCa LINE L1 1 811 -5615 2800 212 16 18 chr9 5714888 5715671 -136555773 + L1PA15-16 LINE L1 1637 2428 -4369 * 2614 111 16 18 chr9 5715739 5716126 -136555318 + MSTB1 LTR MaLR 1 386 -46 5691 146 4 10 chr9 5716126 5717402 -136554042 + L1PA15 LINE L1 4879 6144 -21 2831 245 136 73 chr9 5717419 5718204 -136553240 + L1M4 LINE L1 2247 2982 -3164 1857 169 5 66 chr9 5718204 5718631 -136552813 + MER57A LTR ERV1 3 403 0 2831 245 136 73 chr9 5718631 5718910 -136552534 + L1M4 LINE L1 2982 3242 -2904 2014 139 0 0 chr9 5718910 5719204 -136552240 + AluSx SINE Alu 1 294 -18 2831 245 136 73 chr9 5719204 5719521 -136551923 + L1M4 LINE L1 3242 3538 -2608 2178 108 14 0 chr9 5719521 5719807 -136551637 + AluSc SINE Alu 1 290 -19 2831 245 136 73 chr9 5719807 5719868 -136551576 + L1M4 LINE L1 3538 3594 -2552 13526 89 9 0 chr9 5719868 5722579 -136548865 + L1PA8 LINE L1 3425 6170 -2 2831 245 136 73 chr9 5722579 5722877 -136548567 + L1M4 LINE L1 3594 4099 -2047 2198 166 42 14 chr9 5722886 5723319 -136548125 + L1MA7 LINE L1 5528 5972 -328 830 228 30 42 chr9 5723318 5723555 -136547889 + L1MCb LINE L1 605 838 -5207 * 2645 200 73 10 chr9 5723566 5724265 -136547179 + L1MCb LINE L1 893 1635 -4929 934 194 0 0 chr9 5724269 5724439 -136547005 + L1MB4 LINE L1 3999 4168 -1978 2092 269 75 28 chr9 5724471 5725287 -136546157 - L1M2 LINE L1 -6005 1204 1 1542 145 25 0 chr9 5725291 5725573 -136545871 + L1MA7 LINE L1 6001 6289 -2 3307 168 22 58 chr9 5725599 5725958 -136545486 + L1MB4 LINE L1 5435 5805 -375 339 25 0 0 chr9 5725958 5725998 -136545446 + (TG)n Simple_repeat Simple_repeat 2 41 0 3307 168 22 58 chr9 5725998 5726412 -136545032 + L1MB4 LINE L1 5805 6180 0 5336 179 21 21 chr9 5726416 5726704 -136544740 + L1MC2 LINE L1 5023 5309 -1035 12522 161 19 15 chr9 5726704 5728153 -136543291 - L1PA11 LINE L1 -4 6170 4729 197 33 33 0 chr9 5728153 5728183 -136543261 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 12522 161 19 15 chr9 5728183 5729876 -136541568 - L1PA11 LINE L1 -1445 4729 3022 5336 179 21 21 chr9 5729876 5730902 -136540542 + L1MC2 LINE L1 5309 6343 -1 1048 161 15 62 chr9 5730902 5731151 -136540293 + L1MC2 LINE L1 6089 6336 -8 342 256 82 73 chr9 5731488 5731721 -136539723 + MLT1J LTR MaLR 61 333 -178 31776 107 14 18 chr9 5732554 5738946 -136532498 + L1PA7 LINE L1 10 6469 0 193 345 101 17 chr9 5741679 5741798 -136529646 - L3b LINE CR1 -99 1484 1356 27 29 0 0 chr9 5741924 5741958 -136529486 + AT_rich Low_complexity Low_complexity 1 34 0 366 290 101 5 chr9 5742406 5742623 -136528821 + L1ME4a LINE L1 5645 5882 -239 396 0 0 0 chr9 5745132 5745176 -136526268 + (CA)n Simple_repeat Simple_repeat 1 44 0 225 0 0 0 chr9 5745175 5745200 -136526244 + (GA)n Simple_repeat Simple_repeat 2 26 0 * 1978 116 7 0 chr9 5745869 5746146 -136525298 - AluSq SINE Alu 0 313 35 274 250 107 68 chr9 5746626 5746831 -136524613 + MLT1J LTR MaLR 61 311 -200 703 19 48 0 chr9 5746991 5747096 -136524348 + (TAGA)n Simple_repeat Simple_repeat 2 111 0 21 0 0 0 chr9 5747642 5747663 -136523781 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 5747814 5747836 -136523608 + AT_rich Low_complexity Low_complexity 1 22 0 2370 190 51 0 chr9 5748430 5748919 -136522525 + LTR53 LTR ERVL 6 519 0 195 357 97 32 chr9 5749013 5749321 -136522123 + L2 LINE L2 2634 2961 -353 1992 146 73 2 chr9 5750336 5750760 -136520684 - L1MCa LINE L1 -4112 2314 1861 933 18 0 0 chr9 5751598 5751707 -136519737 - L1PA2 LINE L1 0 6155 6047 487 20 2 0 chr9 5751707 5751780 -136519664 + L1M LINE L1 5279 5352 -812 2939 206 35 21 chr9 5752504 5753309 -136518135 - L1 LINE L1 -3153 2993 2178 786 158 0 29 chr9 5753316 5753487 -136517957 - L1MA7 LINE L1 0 6291 6126 5039 237 98 6 chr9 5753488 5754752 -136516692 + L1M2a LINE L1 -779 600 -5783 4162 222 48 29 chr9 5754746 5756079 -136515365 + L1M2a LINE L1 911 2064 -4320 * 4535 64 25 3 chr9 5756079 5756671 -136514773 - L1PA7 LINE L1 0 6154 5550 4162 222 48 29 chr9 5756671 5757101 -136514343 + L1M2a LINE L1 2064 2484 -3900 896 133 0 0 chr9 5757117 5757237 -136514207 + AluSg/x SINE Alu 174 293 -17 1077 225 44 24 chr9 5757438 5757767 -136513677 + L1MC/D LINE L1 5263 5601 -2207 297 51 0 0 chr9 5757767 5757806 -136513638 + (TG)n Simple_repeat Simple_repeat 2 40 0 869 131 0 8 chr9 5757823 5757945 -136513499 - AluSq/x SINE Alu -192 121 1 2197 121 0 0 chr9 5759760 5760057 -136511387 - AluSx SINE Alu -14 298 2 2020 143 0 7 chr9 5760143 5760443 -136511001 - AluSx SINE Alu -14 298 1 238 304 328 12 chr9 5761103 5761353 -136510091 + L2 LINE L2 2984 3312 -1 268 225 36 0 chr9 5761359 5761470 -136509974 + GA-rich Low_complexity Low_complexity 3 117 0 432 222 116 62 chr9 5762631 5763148 -136508296 + MER34 LTR ERV1 42 542 0 1882 148 3 7 chr9 5763536 5763843 -136507601 + AluSx SINE Alu 1 306 0 33 43 0 0 chr9 5764839 5764886 -136506558 + AT_rich Low_complexity Low_complexity 1 47 0 494 292 149 11 chr9 5766004 5766367 -136505077 - LTR33 LTR ERVL -87 434 22 22 0 0 0 chr9 5766669 5766691 -136504753 + AT_rich Low_complexity Low_complexity 1 22 0 22418 112 13 29 chr9 5766701 5768794 -136502650 + L1P LINE L1 11 2136 -4010 2855 22 0 0 chr9 5768794 5769111 -136502333 + AluYb8 SINE Alu 1 317 -1 22418 112 13 29 chr9 5769111 5770129 -136501315 + L1P LINE L1 2136 3054 -3092 2410 84 0 0 chr9 5770129 5770438 -136501006 + AluY SINE Alu 1 309 -2 22418 112 13 29 chr9 5770438 5771119 -136500325 + L1P LINE L1 3054 3744 -2402 3835 56 14 0 chr9 5771119 5771600 -136499844 + L1PA6 LINE L1 5660 6152 -2 507 329 18 28 chr9 5771615 5772004 -136499440 + L1MC4a LINE L1 5548 5932 -1876 2199 84 24 10 chr9 5772393 5772689 -136498755 - AluSq SINE Alu -13 300 1 6320 136 8 1 chr9 5773049 5774110 -136497334 + L1P LINE L1 3242 4310 -1836 261 0 0 0 chr9 5776762 5776791 -136494653 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 24 0 0 0 chr9 5777108 5777132 -136494312 + AT_rich Low_complexity Low_complexity 1 24 0 283 276 126 14 chr9 5777575 5777789 -136493655 + L1ME4a LINE L1 5645 5882 -239 21 0 0 0 chr9 5780233 5780254 -136491190 + AT_rich Low_complexity Low_complexity 1 21 0 194 146 0 24 chr9 5780296 5780337 -136491107 + (GAAA)n Simple_repeat Simple_repeat 4 43 0 2032 104 0 22 chr9 5781008 5781286 -136490158 - AluSq SINE Alu -7 306 35 4244 220 59 15 chr9 5781626 5782246 -136489198 + L1MA9 LINE L1 2527 3118 -3028 2141 145 3 0 chr9 5782246 5782557 -136488887 - AluSx SINE Alu 0 312 1 4244 220 59 15 chr9 5782557 5783234 -136488210 + L1MA9 LINE L1 3118 3881 -2265 2842 99 9 5 chr9 5783242 5783664 -136487780 + L1PB1 LINE L1 5728 6151 0 1711 134 39 36 chr9 5783703 5784039 -136487405 + L1MC3 LINE L1 7441 7777 -8 504 295 5 37 chr9 5784126 5784316 -136487128 + MIR SINE MIR 78 261 -1 4392 181 22 22 chr9 5784397 5785396 -136486048 + L1MA6 LINE L1 5299 6297 -3 6281 192 17 40 chr9 5785401 5786880 -136484564 + L1MA9 LINE L1 3928 5439 -873 2744 20 0 0 chr9 5786880 5787185 -136484259 + AluY SINE Alu 1 305 -6 6281 192 17 40 chr9 5787185 5787585 -136483859 + L1MA9 LINE L1 5439 5757 -555 195 42 0 0 chr9 5787585 5787609 -136483835 + (TG)n Simple_repeat Simple_repeat 1 24 0 6281 192 17 40 chr9 5787609 5788072 -136483372 + L1MA9 LINE L1 5757 6229 -83 351 164 0 0 chr9 5788097 5788152 -136483292 - MER2 DNA MER2_type -10 335 281 * 638 278 11 6 chr9 5788126 5788302 -136483142 - MER8 DNA MER2_type -60 179 3 692 244 121 22 chr9 5788454 5788819 -136482625 - L1M1 LINE L1 -4200 3365 2965 1058 181 0 0 chr9 5788819 5788990 -136482454 + AluSg/x SINE Alu 132 302 -8 2305 269 57 12 chr9 5788990 5789364 -136482080 - L1M2 LINE L1 -4271 2897 2541 2315 90 3 0 chr9 5789364 5789665 -136481779 - AluY SINE Alu -9 302 1 2305 269 57 12 chr9 5789665 5790499 -136480945 - L1M2 LINE L1 -4627 2541 1623 306 106 0 0 chr9 5791307 5791354 -136480090 + (TG)n Simple_repeat Simple_repeat 2 48 0 231 250 25 50 chr9 5791606 5791726 -136479718 - L1MC5 LINE L1 -44 7917 7801 426 184 117 81 chr9 5791767 5791990 -136479454 - L1ME2 LINE L1 -24 6140 5910 21 0 0 0 chr9 5794571 5794592 -136476852 + AT_rich Low_complexity Low_complexity 1 21 0 316 316 105 0 chr9 5794674 5794807 -136476637 + MIR3 SINE MIR 52 198 -10 27 0 0 0 chr9 5795516 5795543 -136475901 + AT_rich Low_complexity Low_complexity 1 27 0 250 313 70 62 chr9 5796384 5796661 -136474783 + L2 LINE L2 2755 3028 -244 695 255 39 77 chr9 5796807 5797117 -136474327 + L2 LINE L2 3010 3307 -6 459 278 125 37 chr9 5797397 5797613 -136473831 + MIR SINE MIR 23 257 -5 22 0 0 0 chr9 5797854 5797876 -136473568 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr9 5797893 5797925 -136473519 + AT_rich Low_complexity Low_complexity 1 32 0 1900 131 48 3 chr9 5798832 5799122 -136472322 - AluSx SINE Alu -9 303 1 1799 203 71 30 chr9 5799577 5800084 -136471360 + MER63C DNA MER1_type 1 528 -402 779 214 99 5 chr9 5800085 5800286 -136471158 - MER58A DNA MER1_type -4 220 1 1270 211 53 65 chr9 5800286 5800704 -136470740 + MER63C DNA MER1_type 518 930 0 201 225 87 55 chr9 5801164 5801262 -136470182 + MIR SINE MIR 85 187 -55 492 213 21 112 chr9 5803854 5804042 -136467402 + MER5B DNA MER1_type 4 174 -4 4056 200 48 46 chr9 5804147 5805233 -136466211 + L1MC3 LINE L1 6018 7105 -680 316 247 12 0 chr9 5805235 5805320 -136466124 + MLT1F1 LTR MaLR 39 124 -443 897 234 62 4 chr9 5805339 5805613 -136465831 + L1MC3 LINE L1 7495 7784 -1 1806 183 13 38 chr9 5806330 5806779 -136464665 + L1 LINE L1 3952 4389 -1757 417 81 0 0 chr9 5806779 5806841 -136464603 + (CA)n Simple_repeat Simple_repeat 2 63 0 5842 109 28 2 chr9 5806855 5808512 -136462932 + L1PA16 LINE L1 4480 6165 -1 6657 47 37 6 chr9 5808516 5809888 -136461556 + L1PA7 LINE L1 4778 6177 0 2536 100 17 0 chr9 5811077 5811426 -136460018 + THE1A LTR MaLR 1 355 0 2003 90 4 4 chr9 5811759 5812015 -136459429 - AluSc SINE Alu -17 292 37 225 337 49 18 chr9 5812176 5812339 -136459105 - LTR67 LTR ERVL -19 538 371 451 219 50 17 chr9 5812647 5812766 -136458678 - MIR SINE MIR -111 151 29 189 331 44 37 chr9 5812951 5813087 -136458357 + L2 LINE L2 1772 1908 -1406 1433 196 79 0 chr9 5813290 5813570 -136457874 + AluJb SINE Alu 1 302 0 297 338 89 14 chr9 5813723 5813936 -136457508 + L2 LINE L2 2088 2316 -998 276 369 130 27 chr9 5813981 5814312 -136457132 + L2 LINE L2 2549 2913 -401 270 309 128 21 chr9 5814326 5814420 -136457024 + MIR SINE MIR 20 123 -139 3375 144 20 8 chr9 5815457 5816061 -136455383 + L1MB3 LINE L1 5478 6088 -95 644 250 60 6 chr9 5816073 5816249 -136455195 + MIR SINE MIR 7 185 -27 296 236 27 73 chr9 5816249 5816359 -136455085 + L1MC4a LINE L1 5530 5634 -2174 183 42 0 0 chr9 5816409 5816433 -136455011 + (CAT)n Simple_repeat Simple_repeat 2 25 0 317 217 60 0 chr9 5816446 5816529 -136454915 + L1MC4a LINE L1 5835 5922 -1886 192 77 0 0 chr9 5816537 5816563 -136454881 + (CATA)n Simple_repeat Simple_repeat 3 28 0 25 31 0 0 chr9 5816745 5816777 -136454667 + AT_rich Low_complexity Low_complexity 1 32 0 398 295 10 82 chr9 5817831 5818038 -136453406 + HAL1 LINE L1 762 953 -1554 572 228 66 12 chr9 5818190 5818357 -136453087 + L1ME3A LINE L1 5836 6011 -159 317 324 86 31 chr9 5818414 5818810 -136452634 + L1ME LINE L1 2397 2824 -3322 604 163 108 0 chr9 5819144 5819273 -136452171 - MER3 DNA MER1_type -1 208 66 513 323 86 14 chr9 5819400 5819830 -136451614 + L1ME LINE L1 5338 5798 -323 2393 76 0 16 chr9 5819855 5820171 -136451273 + AluY SINE Alu 1 311 0 268 271 29 71 chr9 5820171 5820311 -136451133 - MIR SINE MIR -2 260 127 * 809 253 53 32 chr9 5820287 5820572 -136450872 + L2 LINE L2 3021 3311 -2 1818 129 97 23 chr9 5820581 5820930 -136450514 + THE1C LTR MaLR 1 375 0 2337 121 3 16 chr9 5820951 5821331 -136450113 + THE1-int LTR MaLR 549 923 -657 235 174 0 0 chr9 5821382 5821428 -136450016 - MSTA LTR MaLR 0 428 383 619 305 103 47 chr9 5822126 5822691 -136448753 - L2 LINE L2 -217 3055 2454 1127 233 99 35 chr9 5822697 5823131 -136448313 + MLT1C LTR MaLR 6 467 0 3366 104 87 0 chr9 5823161 5823643 -136447801 - MER1A DNA MER1_type 0 527 4 251 318 73 0 chr9 5823664 5823774 -136447670 - L2 LINE L2 -896 2418 2301 205 316 131 53 chr9 5823837 5824081 -136447363 - L2 LINE L2 -1018 2296 2034 25 0 0 0 chr9 5824660 5824685 -136446759 + AT_rich Low_complexity Low_complexity 1 25 0 438 296 10 36 chr9 5824742 5824938 -136446506 - L2 LINE L2 -410 2904 2714 815 88 0 0 chr9 5825119 5825221 -136446223 - AluY SINE Alu -162 149 48 1480 257 41 33 chr9 5825511 5826024 -136445420 + LTR40a LTR ERVL 3 519 0 1072 165 46 46 chr9 5826114 5826332 -136445112 + MER20 DNA MER1_type 2 219 0 416 325 8 0 chr9 5826669 5826786 -136444658 - L2 LINE L2 -380 2934 2817 287 329 206 0 chr9 5826803 5826949 -136444495 - MER5A DNA MER1_type 0 189 14 542 250 68 0 chr9 5826961 5827093 -136444351 - L2 LINE L2 -505 2809 2669 1398 246 55 14 chr9 5827125 5827564 -136443880 + L1ME3 LINE L1 5698 6154 -8 750 254 17 0 chr9 5827585 5827762 -136443682 - L2 LINE L2 -647 2667 2488 1139 251 52 25 chr9 5827772 5828134 -136443310 - L2 LINE L2 -1010 2304 1933 182 265 20 0 chr9 5828157 5828206 -136443238 + MIR SINE MIR 202 251 -11 792 229 6 0 chr9 5828530 5828687 -136442757 + MIR SINE MIR 102 259 -3 2038 215 45 6 chr9 5828706 5829241 -136442203 - MER90 LTR ERV1 0 575 20 180 296 28 42 chr9 5829426 5829497 -136441947 + L3 LINE CR1 276 345 -1232 321 118 0 0 chr9 5829964 5830015 -136441429 + (TG)n Simple_repeat Simple_repeat 2 52 0 184 239 65 0 chr9 5830481 5830527 -136440917 + MIR SINE MIR 158 206 -56 184 224 0 61 chr9 5831065 5831114 -136440330 - L2 LINE L2 -2886 428 383 750 291 45 5 chr9 5832320 5832543 -136438901 + MIR SINE MIR 30 261 -1 2389 102 0 0 chr9 5832609 5832914 -136438530 - AluSx SINE Alu -7 305 1 2328 94 0 0 chr9 5834179 5834478 -136436966 - AluSx SINE Alu -6 306 8 2304 112 0 0 chr9 5835661 5835965 -136435479 - AluSx SINE Alu -7 305 2 2193 117 0 29 chr9 5836051 5836367 -136435077 - AluSx SINE Alu -5 307 1 299 261 318 15 chr9 5837032 5837296 -136434148 + L2 LINE L2 2969 3312 -1 329 266 0 8 chr9 5837298 5837426 -136434018 + GA-rich Low_complexity Low_complexity 3 129 0 454 249 98 61 chr9 5838576 5839096 -136432348 + LTR48 LTR ERV1 1 787 0 1987 120 3 7 chr9 5839479 5839795 -136431649 + AluSx SINE Alu 1 315 0 189 361 76 25 chr9 5840413 5840532 -136430912 + L2 LINE L2 3188 3312 -1 26 64 0 0 chr9 5840791 5840838 -136430606 + AT_rich Low_complexity Low_complexity 1 47 0 21 0 0 0 chr9 5841575 5841596 -136429848 + AT_rich Low_complexity Low_complexity 1 21 0 671 280 123 23 chr9 5841995 5842424 -136429020 - LTR33 LTR ERVL -28 493 22 2536 71 0 3 chr9 5842987 5843297 -136428147 - AluSq SINE Alu -4 309 1 11439 109 13 3 chr9 5843654 5846540 -136424904 + L1PA10 LINE L1 3242 6158 -10 836 104 24 0 chr9 5846540 5846658 -136424786 + L1PB3 LINE L1 6020 6147 -7 224 281 90 0 chr9 5847239 5847328 -136424116 + L2 LINE L2 3217 3313 0 180 77 0 0 chr9 5847651 5847677 -136423767 + (TG)n Simple_repeat Simple_repeat 1 26 0 5348 191 36 8 chr9 5847918 5848926 -136422518 + MST-int LTR MaLR 51 1086 -565 3114 75 18 5 chr9 5848926 5849324 -136422120 + MLT2A1 LTR ERVL 1 403 -41 1904 158 22 33 chr9 5849324 5849684 -136421760 + THE1-int LTR MaLR 1065 1420 -160 28 61 0 0 chr9 5849809 5849858 -136421586 + AT_rich Low_complexity Low_complexity 1 49 0 1277 126 177 52 chr9 5850030 5850301 -136421143 + AluSg1 SINE Alu 5 309 0 242 174 22 0 chr9 5850356 5850402 -136421042 - MER65C LTR ERV1 -312 149 103 2298 121 0 3 chr9 5850874 5851187 -136420257 + AluSx SINE Alu 1 312 0 487 279 16 8 chr9 5851237 5851366 -136420078 - MIR SINE MIR -108 154 25 7959 253 74 40 chr9 5851578 5852120 -136419324 + L1MC4a LINE L1 4475 4997 -2811 1277 199 224 9 chr9 5852120 5852446 -136418998 + MSTD LTR MaLR 1 396 0 7959 253 74 40 chr9 5852446 5853083 -136418361 + L1MC4a LINE L1 4997 5611 -2197 2495 181 66 25 chr9 5853083 5853568 -136417876 + MLT1D LTR MaLR 1 505 0 7959 253 74 40 chr9 5853568 5853943 -136417501 + L1MC4a LINE L1 5611 5972 -1836 2137 117 0 3 chr9 5853943 5854233 -136417211 - AluSx SINE Alu -16 296 8 7959 253 74 40 chr9 5854233 5855901 -136415543 + L1MC4a LINE L1 5972 7807 -1 1459 207 43 6 chr9 5857083 5857431 -136414013 + L1MB5 LINE L1 4922 5282 -864 4161 177 7 45 chr9 5859321 5860184 -136411260 + L1MB5 LINE L1 5328 6157 -17 1395 265 84 25 chr9 5860797 5861364 -136410080 + L2 LINE L2 2712 3313 0 382 278 17 57 chr9 5861392 5861568 -136409876 - MIR SINE MIR -2 260 92 899 220 76 73 chr9 5861571 5861968 -136409476 + L1MC5 LINE L1 6827 7228 -733 784 294 54 21 chr9 5862010 5862417 -136409027 + L1MC5 LINE L1 7260 7630 -178 296 317 128 4 chr9 5862678 5862899 -136408545 - HAL1b LINE L1 -701 1651 400 324 284 92 37 chr9 5862989 5863098 -136408346 + L2 LINE L2 3158 3272 0 268 150 0 50 chr9 5863339 5863399 -136408045 + L2 LINE L2 1951 2007 -1307 1040 193 0 6 chr9 5863462 5863643 -136407801 - AluJb SINE Alu 0 312 133 390 142 83 24 chr9 5863643 5863812 -136407632 + (TA)n Simple_repeat Simple_repeat 2 180 0 343 80 94 25 chr9 5863841 5864068 -136407376 + (TA)n Simple_repeat Simple_repeat 1 242 0 335 144 56 25 chr9 5864103 5864263 -136407181 + (TATAA)n Simple_repeat Simple_repeat 5 169 0 31 68 0 0 chr9 5864263 5864322 -136407122 + AT_rich Low_complexity Low_complexity 1 59 0 321 86 36 64 chr9 5864324 5864464 -136406980 + (TTATA)n Simple_repeat Simple_repeat 5 140 0 279 93 0 0 chr9 5864478 5864521 -136406923 + (GA)n Simple_repeat Simple_repeat 1 43 0 506 171 207 18 chr9 5864543 5864654 -136406790 - AluJb SINE Alu -92 220 89 267 238 89 89 chr9 5865413 5865514 -136405930 + MER5B DNA MER1_type 74 174 -4 1336 194 184 45 chr9 5866405 5866778 -136404666 + LTR40c LTR ERVL 1 435 -30 2912 203 88 33 chr9 5866778 5867473 -136403971 + MER44D DNA MER2_type 1 605 0 1336 194 184 45 chr9 5867473 5867502 -136403942 + LTR40c LTR ERVL 435 459 -6 299 302 17 64 chr9 5867536 5867708 -136403736 + HERVL40 LTR ERVL 20 183 -5347 903 218 68 33 chr9 5867818 5868171 -136403273 + HERVL40 LTR ERVL 918 1353 -4177 1700 184 0 13 chr9 5868459 5868768 -136402676 - AluJo SINE Alu -1 311 7 292 247 82 112 chr9 5868796 5868966 -136402478 + HERVL40 LTR ERVL 1380 1544 -3986 1936 162 141 62 chr9 5869142 5869575 -136401869 - MLT1C LTR MaLR 0 467 1 525 227 61 45 chr9 5869575 5869707 -136401737 + HERVL40 LTR ERVL 2682 2815 -2715 1137 239 81 25 chr9 5869753 5870038 -136401406 + LTR40a LTR ERVL 218 518 -1 635 196 240 11 chr9 5870320 5870499 -136400945 - MIR SINE MIR -38 224 5 1468 171 132 48 chr9 5870736 5871030 -136400414 - MLT1D LTR MaLR -2 503 172 2095 121 27 0 chr9 5871030 5871327 -136400117 + AluSx SINE Alu 1 305 -7 1468 171 132 48 chr9 5871327 5871389 -136400055 - MLT1D LTR MaLR -333 172 117 394 278 79 0 chr9 5871888 5872014 -136399430 + MIR3 SINE MIR 50 185 -23 6025 116 47 21 chr9 5872257 5875111 -136396333 + SVA Other Other 19 1386 0 301 255 277 16 chr9 5878463 5878647 -136392797 + MIR SINE MIR 3 234 -28 187 268 0 0 chr9 5878619 5878660 -136392784 + L2 LINE L2 3211 3251 -21 * 633 225 98 140 chr9 5878670 5879070 -136392374 - LTR33 LTR ERVL -138 383 1 3170 39 0 0 chr9 5879079 5879439 -136392005 - L1PA5 LINE L1 0 6154 5795 2007 161 26 77 chr9 5880086 5880577 -136390867 - MER31B LTR ERV1 0 466 1 1115 289 82 17 chr9 5880673 5881137 -136390307 + LTR33 LTR ERVL 12 505 -16 211 281 0 0 chr9 5881375 5881432 -136390012 + (TATATG)n Simple_repeat Simple_repeat 6 62 0 257 223 36 0 chr9 5881566 5881676 -136389768 - L1MC3 LINE L1 -1139 6702 6571 238 232 29 14 chr9 5881626 5881695 -136389749 + L1MCa LINE L1 1995 2064 -4362 * 263 333 0 0 chr9 5881718 5881808 -136389636 + L1MC4 LINE L1 6614 6703 -1339 231 314 47 0 chr9 5881816 5881902 -136389542 - L1MC4 LINE L1 -1339 6703 6614 3296 145 41 23 chr9 5882451 5883015 -136388429 - L1MB7 LINE L1 -19 6165 5592 1077 219 23 0 chr9 5883074 5883289 -136388155 + MIR SINE MIR 9 228 -34 366 239 0 54 chr9 5883965 5884057 -136387387 + MER21B LTR ERV1 1 87 -776 1248 226 124 6 chr9 5884080 5884403 -136387041 + MER21B LTR ERV1 20 380 -483 4348 39 8 0 chr9 5884507 5885020 -136386424 - L1PA5 LINE L1 -384 5770 5254 3354 58 2 2 chr9 5885031 5885430 -136386014 + L1PA5 LINE L1 5755 6153 -1 241 176 27 0 chr9 5885982 5886056 -136385388 + (TA)n Simple_repeat Simple_repeat 2 77 0 521 311 102 22 chr9 5886073 5886674 -136384770 + L2 LINE L2 2458 3174 -139 269 257 112 73 chr9 5887885 5888064 -136383380 - MER5A DNA MER1_type 0 189 4 229 190 69 0 chr9 5888657 5888715 -136382729 - MIR SINE MIR -98 110 49 424 258 108 24 chr9 5888731 5888898 -136382546 - MER112 DNA MER1_type -9 251 71 424 88 206 15 chr9 5889396 5889464 -136381980 + AluS SINE Alu 4 84 -228 561 287 89 3 chr9 5891039 5891321 -136380123 - L1ME4a LINE L1 -267 5854 5549 803 146 0 8 chr9 5891617 5891747 -136379697 - FLAM_C SINE Alu -8 135 7 2386 80 30 0 chr9 5891788 5892089 -136379355 - AluSx SINE Alu -2 310 1 38 39 0 0 chr9 5892766 5892818 -136378626 + AT_rich Low_complexity Low_complexity 1 52 0 21 0 0 0 chr9 5893101 5893122 -136378322 + AT_rich Low_complexity Low_complexity 1 21 0 281 289 185 33 chr9 5893158 5893521 -136377923 + L1ME4a LINE L1 5581 5998 -123 945 188 16 36 chr9 5893539 5893731 -136377713 - MER20 DNA MER1_type 0 219 32 22 70 0 0 chr9 5893788 5893831 -136377613 + AT_rich Low_complexity Low_complexity 1 43 0 635 284 105 57 chr9 5894293 5894817 -136376627 - L1MC/D LINE L1 -2005 5803 5255 412 304 24 16 chr9 5895012 5895137 -136376307 + L2 LINE L2 3183 3308 -5 182 61 0 30 chr9 5897307 5897340 -136374104 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 271 268 143 62 chr9 5898001 5898210 -136373234 - L3 LINE CR1 -7 1570 1345 572 223 4 128 chr9 5899654 5899919 -136371525 + L2 LINE L2 3082 3313 0 236 321 0 25 chr9 5900115 5900196 -136371248 - MIR SINE MIR -24 238 160 252 238 50 0 chr9 5900197 5900277 -136371167 + HsTC2 DNA Tc2 3 86 -1812 664 253 13 13 chr9 5900295 5900445 -136370999 - MIR SINE MIR -111 151 2 318 269 86 6 chr9 5900548 5900658 -136370786 - Charlie7 DNA MER1_type -4 2608 2477 375 200 0 12 chr9 5900658 5900738 -136370706 - MER116 DNA Mariner -1 79 1 318 269 86 6 chr9 5900738 5900802 -136370642 - Charlie7 DNA MER1_type -135 2477 2420 * 1067 223 136 14 chr9 5900798 5901143 -136370301 - Charlie7 DNA MER1_type -1891 721 335 1173 176 41 16 chr9 5901666 5901910 -136369534 + L1MC3 LINE L1 7526 7775 -10 534 96 0 24 chr9 5902250 5902333 -136369111 - L1PB4 LINE L1 -8 6148 6068 297 263 79 0 chr9 5902923 5902999 -136368445 + L2 LINE L2 3191 3272 0 376 239 123 29 chr9 5903476 5903614 -136367830 + MIR SINE MIR 80 230 -32 379 232 35 84 chr9 5904017 5904159 -136367285 + MIR SINE MIR 72 206 -56 2261 117 0 0 chr9 5904577 5904876 -136366568 + AluSx SINE Alu 1 299 -13 251 327 58 10 chr9 5905002 5905106 -136366338 - MIR SINE MIR -153 109 1 341 279 59 82 chr9 5906892 5906975 -136364469 - MIR SINE MIR -27 235 152 225 0 0 0 chr9 5906975 5907000 -136364444 + (GA)n Simple_repeat Simple_repeat 2 26 0 341 279 59 82 chr9 5907000 5907164 -136364280 - MIR SINE MIR -110 152 2 300 216 0 0 chr9 5907398 5907449 -136363995 + MER81 DNA DNA 3 53 -61 364 279 121 7 chr9 5908437 5908577 -136362867 - MIR SINE MIR -58 204 49 465 326 56 25 chr9 5908622 5908818 -136362626 - L2 LINE L2 0 3272 3071 24 32 0 0 chr9 5910223 5910254 -136361190 + AT_rich Low_complexity Low_complexity 1 31 0 2232 110 3 0 chr9 5910962 5911262 -136360182 - AluSq SINE Alu -12 301 1 23 33 0 0 chr9 5911543 5911573 -136359871 + AT_rich Low_complexity Low_complexity 1 30 0 41817 66 3 4 chr9 5911587 5917739 -136353705 - L1PA5 LINE L1 -2 6152 3 3580 125 8 43 chr9 5917751 5917943 -136353501 - L1MA6 LINE L1 -22 6278 6081 2110 138 50 56 chr9 5917943 5918320 -136353124 - THE1C LTR MaLR 0 375 1 3580 125 8 43 chr9 5918320 5918622 -136352822 - L1MA6 LINE L1 -219 6081 5770 405 0 0 0 chr9 5918622 5918667 -136352777 + (TG)n Simple_repeat Simple_repeat 2 46 0 3580 125 8 43 chr9 5918667 5918682 -136352762 - L1MA6 LINE L1 -530 5770 5756 710 153 89 24 chr9 5918682 5918806 -136352638 - FLAM_A SINE Alu -1 132 1 3580 125 8 43 chr9 5918806 5918919 -136352525 - L1MA6 LINE L1 -544 5756 5676 205 106 21 21 chr9 5918925 5918972 -136352472 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 45 45 0 0 chr9 5919680 5919746 -136351698 + AT_rich Low_complexity Low_complexity 1 66 0 195 238 188 38 chr9 5920252 5920332 -136351112 - L2 LINE L2 -12 3260 3169 874 281 42 4 chr9 5920674 5920912 -136350532 - MIR SINE MIR -13 249 3 1883 249 55 21 chr9 5921073 5921976 -136349468 - L1ME LINE L1 -438 5724 4787 1930 154 0 0 chr9 5922197 5922495 -136348949 + AluJb SINE Alu 1 298 -14 1390 112 0 39 chr9 5922701 5922907 -136348537 - AluSg/x SINE Alu -10 300 103 361 268 48 26 chr9 5923727 5923933 -136347511 - MLT1L LTR MaLR -363 252 5 194 311 98 59 chr9 5923950 5924204 -136347240 + L2 LINE L2 2603 2866 -448 332 176 0 0 chr9 5924218 5924269 -136347175 - MER58A DNA MER1_type -33 191 141 699 77 30 179 chr9 5924288 5924386 -136347058 + Tigger7 DNA MER2_type 2232 2296 -195 861 137 23 8 chr9 5924386 5924517 -136346927 - FLAM_C SINE Alu 0 133 1 699 77 30 179 chr9 5924517 5924586 -136346858 + Tigger7 DNA MER2_type 2296 2374 -117 814 123 0 16 chr9 5924669 5924791 -136346653 + Tigger7 DNA MER2_type 2368 2487 0 675 248 14 0 chr9 5924791 5924932 -136346512 - MER58A DNA MER1_type 0 143 1 690 296 94 14 chr9 5925607 5925830 -136345614 + MIR SINE MIR 15 255 -7 1083 267 49 21 chr9 5925919 5926207 -136345237 - MLT1J1 LTR MaLR -128 318 23 667 321 109 44 chr9 5926596 5927120 -136344324 - L2 LINE L2 0 3313 2728 2368 97 0 0 chr9 5927120 5927429 -136344015 - AluSc SINE Alu 0 309 1 667 321 109 44 chr9 5927429 5927576 -136343868 - L2 LINE L2 -585 2728 2592 841 285 34 4 chr9 5929292 5929527 -136341917 + MIR SINE MIR 8 249 -13 548 235 53 82 chr9 5930391 5930634 -136340810 + L1ME4a LINE L1 5631 5866 -255 466 17 0 34 chr9 5930695 5930754 -136340690 + AluY SINE Alu 242 298 -13 1845 51 0 0 chr9 5930758 5930972 -136340472 + L1PA5 LINE L1 5933 6146 -8 22 0 0 0 chr9 5930972 5930994 -136340450 + AT_rich Low_complexity Low_complexity 1 22 0 815 272 40 36 chr9 5931328 5931578 -136339866 - MIR SINE MIR -4 258 8 260 200 0 20 chr9 5931758 5931808 -136339636 + MIR SINE MIR 101 149 -59 331 273 147 47 chr9 5932018 5932168 -136339276 + L2 LINE L2 3106 3270 -2 2140 130 19 3 chr9 5932422 5932729 -136338715 - AluJb SINE Alu 0 312 1 348 267 147 47 chr9 5932949 5933099 -136338345 - L2 LINE L2 -2 3270 3106 517 291 32 6 chr9 5933394 5933552 -136337892 - MER5B DNA MER1_type -16 162 1 7801 45 7 0 chr9 5934393 5935728 -136335716 - L1PA4 LINE L1 0 6155 4817 2871 165 49 27 chr9 5935912 5935968 -136335476 - L1MB8 LINE L1 0 6178 6125 2241 147 6 32 chr9 5935968 5936314 -136335130 + MER1B DNA MER1_type 1 337 0 2871 165 49 27 chr9 5936314 5936844 -136334600 - L1MB8 LINE L1 -53 6125 5579 211 194 0 0 chr9 5937418 5937454 -136333990 + CT-rich Low_complexity Low_complexity 5 40 0 1025 181 0 0 chr9 5937549 5937715 -136333729 - FRAM SINE Alu -11 165 1 1444 114 14 5 chr9 5937726 5937946 -136333498 - L1MA5 LINE L1 -5 6295 6074 2320 91 0 3 chr9 5938442 5938740 -136332704 - AluSx SINE Alu -15 297 1 286 235 12 35 chr9 5939023 5939108 -136332336 - MIR SINE MIR -7 255 173 310 193 12 12 chr9 5939109 5939192 -136332252 + (CATTA)n Simple_repeat Simple_repeat 2 84 0 229 369 0 0 chr9 5939244 5939328 -136332116 + MIR SINE MIR 61 144 -118 549 176 0 0 chr9 5939549 5939634 -136331810 + AluJb SINE Alu 1 85 -227 2208 110 0 3 chr9 5939634 5939935 -136331509 - LTR46 LTR ERV1 0 460 161 1963 162 48 14 chr9 5939938 5940296 -136331148 - LTR46-int LTR ERV1 -3 6982 6613 2765 88 0 1 chr9 5940412 5940820 -136330624 + LTR46 LTR ERV1 1 460 0 1293 186 0 4 chr9 5940822 5941048 -136330396 + AluJb SINE Alu 83 307 -5 16887 172 22 17 chr9 5941249 5947286 -136324158 + L1PA12 LINE L1 1 6115 -704 2351 82 0 3 chr9 5947286 5947579 -136323865 + AluY SINE Alu 1 292 -19 16887 172 22 17 chr9 5947579 5948233 -136323211 + L1PA12 LINE L1 6115 6764 -55 227 200 0 0 chr9 5948663 5948703 -136322741 - MLT1K LTR MaLR -359 229 190 183 308 223 0 chr9 5949186 5949316 -136322128 + MIR SINE MIR 34 192 -70 999 208 98 4 chr9 5949340 5949585 -136321859 + MLT1C LTR MaLR 9 276 -191 2540 161 9 0 chr9 5949785 5950220 -136321224 + L1P LINE L1 3951 4389 -1757 269 173 19 0 chr9 5951418 5951470 -136319974 + L3 LINE CR1 1518 1570 -7 328 308 38 53 chr9 5951613 5951746 -136319698 + L2 LINE L2 3142 3272 0 253 349 77 12 chr9 5952977 5953146 -136318298 + L2 LINE L2 2872 3051 -221 227 263 18 0 chr9 5953538 5953595 -136317849 - Charlie8 DNA MER1_type -999 1418 1361 283 278 151 56 chr9 5953939 5954065 -136317379 + L2 LINE L2 3134 3271 -1 967 162 5 89 chr9 5954367 5954558 -136316886 + FAM SINE Alu 1 175 0 257 269 26 13 chr9 5954656 5954734 -136316710 - L2 LINE L2 -209 3063 2985 4666 190 99 30 chr9 5955148 5955415 -136316029 - MER52A LTR ERV1 -518 1237 990 2338 97 3 3 chr9 5955415 5955725 -136315719 + AluSg SINE Alu 1 310 0 4666 190 99 30 chr9 5955725 5955815 -136315629 - MER52A LTR ERV1 -765 990 908 2298 91 10 3 chr9 5955815 5956123 -136315321 - AluSq SINE Alu -3 310 1 4666 190 99 30 chr9 5956123 5956838 -136314606 - MER52A LTR ERV1 -847 908 1 353 100 20 0 chr9 5956840 5956890 -136314554 + AluJ/FRAM SINE Alu 225 275 -27 582 314 91 19 chr9 5957028 5957292 -136314152 - MER115 DNA AcHobo -390 303 21 1337 246 87 27 chr9 5957294 5957697 -136313747 - L2 LINE L2 -519 2795 2369 358 345 54 14 chr9 5957866 5958014 -136313430 - MIR SINE MIR -96 166 13 1616 261 183 30 chr9 5958401 5958695 -136312749 + L2 LINE L2 1673 1921 -1393 3291 149 29 23 chr9 5958695 5959250 -136312194 - MER74A LTR ERVL 0 558 1 1616 261 183 30 chr9 5959250 5959698 -136311746 + L2 LINE L2 1921 2529 -785 2571 197 8 126 chr9 5959698 5960571 -136310873 + L1MB7 LINE L1 4481 5250 -896 * 3377 161 7 11 chr9 5960562 5961132 -136310312 + L1MB7 LINE L1 5567 6134 -50 228 187 0 93 chr9 5961139 5961214 -136310230 + L1MA10 LINE L1 6263 6330 -4 27 49 0 0 chr9 5961214 5961255 -136310189 + AT_rich Low_complexity Low_complexity 1 41 0 386 262 91 77 chr9 5961265 5961486 -136309958 + L2 LINE L2 2548 2771 -543 543 264 167 17 chr9 5963832 5964006 -136307438 - MIR SINE MIR -11 251 52 28 29 0 0 chr9 5964557 5964592 -136306852 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr9 5964812 5964834 -136306610 + AT_rich Low_complexity Low_complexity 1 22 0 2103 119 16 7 chr9 5964839 5965142 -136306302 + AluSx SINE Alu 1 306 -6 22 0 0 0 chr9 5965275 5965297 -136306147 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr9 5965415 5965440 -136306004 + AT_rich Low_complexity Low_complexity 1 25 0 2337 84 0 0 chr9 5965540 5965837 -136305607 + AluSg SINE Alu 1 297 -13 25 31 0 0 chr9 5965961 5965993 -136305451 + AT_rich Low_complexity Low_complexity 1 32 0 252 175 53 18 chr9 5966074 5966131 -136305313 - L1ME3A LINE L1 -95 6075 6017 1597 188 10 10 chr9 5966223 5966511 -136304933 - AluJo SINE Alu -24 288 1 252 219 146 57 chr9 5966597 5966720 -136304724 - L1ME3A LINE L1 -268 5853 5720 2699 196 69 13 chr9 5966943 5967064 -136304380 - L1ME1 LINE L1 -187 5979 5866 180 0 0 0 chr9 5967064 5967084 -136304360 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 2699 196 69 13 chr9 5967084 5967594 -136303850 - L1ME1 LINE L1 -300 5866 5458 2186 123 0 3 chr9 5967594 5967903 -136303541 - AluSx SINE Alu -4 308 1 2699 196 69 13 chr9 5967903 5968002 -136303442 - L1ME1 LINE L1 -708 5458 5366 221 58 77 0 chr9 5968010 5968062 -136303382 + (TA)n Simple_repeat Simple_repeat 1 56 0 1836 167 3 13 chr9 5968078 5968378 -136303066 - AluJo SINE Alu -15 297 1 2161 190 40 77 chr9 5968387 5968520 -136302924 - L1ME1 LINE L1 -757 5389 5253 1694 157 25 0 chr9 5968520 5968794 -136302650 - AluSx SINE Alu -23 289 9 2161 190 40 77 chr9 5968794 5969307 -136302137 - L1ME1 LINE L1 -893 5253 4767 671 268 93 0 chr9 5970360 5970554 -136300890 + MIR SINE MIR 49 260 -2 411 224 299 0 chr9 5970603 5970737 -136300707 - MER5A DNA MER1_type -6 183 10 510 277 40 40 chr9 5970788 5970965 -136300479 - MER5B DNA MER1_type -1 177 1 215 308 192 42 chr9 5972284 5972404 -136299040 - L2 LINE L2 -2 3270 3133 581 316 66 20 chr9 5972590 5972834 -136298610 - MIR SINE MIR -6 256 2 233 73 0 24 chr9 5972884 5972925 -136298519 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 985 251 112 27 chr9 5973123 5973497 -136297947 + MER113 DNA MER1_type? 116 521 0 302 304 143 54 chr9 5973497 5973721 -136297723 + MIR SINE MIR 13 256 -6 555 240 85 25 chr9 5973787 5973987 -136297457 + MIR SINE MIR 51 262 0 532 246 41 86 chr9 5975191 5975459 -136295985 - MER112 DNA MER1_type 0 256 1 248 290 0 0 chr9 5975460 5975529 -136295915 - MIR3 SINE MIR -49 159 91 518 308 12 12 chr9 5975940 5976109 -136295335 + MIR SINE MIR 89 257 -5 804 273 144 11 chr9 5976511 5976789 -136294655 + Charlie2 DNA MER1_type 4 318 -2464 2214 210 101 30 chr9 5976801 5977251 -136294193 + Charlie2 DNA MER1_type 1871 2388 -474 3527 39 17 0 chr9 5977251 5977657 -136293787 + L1PA4 LINE L1 5743 6155 0 2214 210 101 30 chr9 5977657 5977897 -136293547 + Charlie2 DNA MER1_type 2388 2610 -252 2521 52 0 10 chr9 5978175 5978485 -136292959 + AluY SINE Alu 1 307 -4 1264 101 48 0 chr9 5978614 5978802 -136292642 - L1MA5A LINE L1 -3 6294 6098 419 265 70 22 chr9 5978806 5979036 -136292408 + Charlie2 DNA MER1_type 2606 2846 -16 12851 165 27 18 chr9 5979625 5983027 -136288417 + L1PB1 LINE L1 2598 6032 -119 2500 69 0 0 chr9 5983029 5983332 -136288112 + AluY SINE Alu 1 303 -8 22 56 0 0 chr9 5983580 5983616 -136287828 + AT_rich Low_complexity Low_complexity 1 36 0 255 308 59 18 chr9 5983706 5983875 -136287569 + L3 LINE CR1 270 445 -1132 1192 266 110 17 chr9 5983906 5984379 -136287065 - LTR33A LTR ERVL -5 518 2 209 285 76 101 chr9 5984402 5984560 -136286884 + L3 LINE CR1 473 626 -951 411 358 55 5 chr9 5984655 5984873 -136286571 + L3 LINE CR1 1044 1272 -305 288 275 290 15 chr9 5984876 5985076 -136286368 - MIR SINE MIR 0 262 8 308 312 7 78 chr9 5985108 5985262 -136286182 + L3 LINE CR1 1326 1468 -109 1157 208 60 18 chr9 5985288 5985624 -136285820 + L1M4 LINE L1 2368 2717 -3429 229 233 50 0 chr9 5986960 5987020 -136284424 - L1ME LINE L1 -536 5585 5523 3360 154 64 43 chr9 5987341 5987426 -136284018 - L1MA7 LINE L1 -1 6290 6208 2327 103 7 3 chr9 5987426 5987736 -136283708 + AluSq SINE Alu 1 311 -2 3360 154 64 43 chr9 5987736 5988370 -136283074 - L1MA7 LINE L1 -83 6208 5556 219 149 0 64 chr9 5988441 5988488 -136282956 + (TG)n Simple_repeat Simple_repeat 2 45 0 439 348 49 18 chr9 5988774 5988998 -136282446 + MIR SINE MIR 32 262 0 1714 236 113 11 chr9 5989403 5989874 -136281570 - LTR33 LTR ERVL -2 519 1 2122 199 44 58 chr9 5990182 5990471 -136280973 - MLT1D LTR MaLR -7 498 217 2235 109 3 0 chr9 5990471 5990764 -136280680 - AluSx SINE Alu -18 294 1 2122 199 44 58 chr9 5990764 5990976 -136280468 - MLT1D LTR MaLR -288 217 4 927 313 67 46 chr9 5991729 5992253 -136279191 - ERVL LTR ERVL -420 5344 4810 892 178 5 49 chr9 5992715 5992900 -136278544 + AluJo SINE Alu 123 299 -13 192 182 0 45 chr9 5993968 5994012 -136277432 + MIR SINE MIR 213 254 -8 591 286 45 15 chr9 5994560 5994759 -136276685 + MIR SINE MIR 13 217 -45 2218 108 0 7 chr9 5994904 5995200 -136276244 + AluSq SINE Alu 1 294 -19 650 261 153 47 chr9 5995272 5995698 -136275746 - MLT1J LTR MaLR -10 501 31 434 323 12 24 chr9 5996215 5996382 -136275062 + MIR3 SINE MIR 37 201 -7 247 298 0 0 chr9 5996949 5997006 -136274438 + polypurine Low_complexity Low_complexity 1 57 0 216 67 0 0 chr9 5997023 5997053 -136274391 + (TGGA)n Simple_repeat Simple_repeat 3 32 0 879 264 65 0 chr9 5997070 5997286 -136274158 + MIR SINE MIR 13 242 -20 257 340 11 0 chr9 5998553 5998647 -136272797 + GA-rich Low_complexity Low_complexity 2 96 0 264 357 37 1 chr9 5999221 5999349 -136272095 + MIR SINE MIR 17 148 -60 357 364 137 25 chr9 5999387 5999825 -136271619 + L2 LINE L2 2564 3055 -217 365 371 0 0 chr9 6000744 6000860 -136270584 + L2 LINE L2 3137 3252 -20 714 173 173 43 chr9 6000904 6001089 -136270355 - MER3 DNA MER1_type 0 209 1 356 270 162 14 chr9 6001091 6001268 -136270176 - MIR SINE MIR -48 214 16 185 143 57 0 chr9 6001467 6001502 -136269942 - MER5C DNA MER1_type 0 324 288 * 278 224 90 0 chr9 6001500 6001567 -136269877 - MER5C DNA MER1_type -249 75 3 3229 102 7 7 chr9 6001978 6002421 -136269023 + L1PB3 LINE L1 5712 6154 0 1989 151 16 6 chr9 6003507 6003824 -136267620 - MLT2C1 LTR ERVL -77 320 1 243 270 17 70 chr9 6004542 6004657 -136266787 + L2 LINE L2 2893 3001 -271 646 246 33 74 chr9 6004699 6004943 -136266501 - MIR SINE MIR -26 236 3 1872 150 10 14 chr9 6004962 6005255 -136266189 - AluJo SINE Alu -20 292 1 23 0 0 0 chr9 6005508 6005531 -136265913 + AT_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chr9 6005564 6005601 -136265843 + AT_rich Low_complexity Low_complexity 1 37 0 26 64 0 0 chr9 6005682 6005729 -136265715 + AT_rich Low_complexity Low_complexity 1 47 0 1573 248 28 18 chr9 6006107 6006494 -136264950 + MLT1I LTR MaLR 11 401 -8 313 316 70 51 chr9 6006534 6006847 -136264597 + L1ME4a LINE L1 5803 6121 0 362 299 0 0 chr9 6007051 6007138 -136264306 - MIR SINE MIR -95 113 27 279 298 0 12 chr9 6007332 6007416 -136264028 - MIR3 SINE MIR -35 173 91 228 206 0 130 chr9 6007475 6007567 -136263877 - L2 LINE L2 0 3272 3193 2374 130 12 35 chr9 6008001 6008346 -136263098 + MER1B DNA MER1_type 1 337 0 1375 276 106 15 chr9 6008939 6009413 -136262031 - LTR33 LTR ERVL -4 517 1 212 250 0 18 chr9 6010611 6010667 -136260777 + MIR SINE MIR 102 156 -106 585 258 57 5 chr9 6011551 6011750 -136259694 - MIR SINE MIR -2 260 53 5277 55 40 5 chr9 6011865 6012518 -136258926 + L1PA8 LINE L1 5486 6161 -11 228 365 94 10 chr9 6012568 6012664 -136258780 + MIR SINE MIR 28 131 -131 2209 132 0 0 chr9 6012678 6012982 -136258462 + AluSx SINE Alu 1 304 -8 231 61 0 0 chr9 6012998 6013031 -136258413 + (TA)n Simple_repeat Simple_repeat 1 33 0 36 0 0 0 chr9 6013057 6013093 -136258351 + AT_rich Low_complexity Low_complexity 1 36 0 2202 121 0 19 chr9 6013095 6013409 -136258035 + AluSg SINE Alu 1 308 -2 2341 86 3 10 chr9 6013609 6013911 -136257533 - AluSp SINE Alu -13 300 1 2358 87 3 0 chr9 6014212 6014511 -136256933 + AluSp SINE Alu 1 300 -13 398 238 0 10 chr9 6014562 6014663 -136256781 - L1ME LINE L1 -298 5823 5724 1626 230 49 45 chr9 6014685 6015057 -136256387 + LTR33 LTR ERVL 1 377 -144 279 114 0 0 chr9 6015057 6015101 -136256343 + (CA)n Simple_repeat Simple_repeat 2 45 0 1626 230 49 45 chr9 6015101 6015220 -136256224 + LTR33 LTR ERVL 377 494 -27 373 290 20 0 chr9 6015263 6015363 -136256081 - L1ME LINE L1 -461 5660 5559 263 272 29 48 chr9 6015616 6015719 -136255725 + MIR SINE MIR 104 204 -58 1007 156 0 0 chr9 6015968 6016150 -136255294 - AluJb SINE Alu 0 323 142 2193 119 3 0 chr9 6016228 6016530 -136254914 - AluSp SINE Alu -10 303 1 642 235 138 113 chr9 6016990 6017424 -136254020 - MLT1H LTR MaLR 0 549 105 422 324 113 35 chr9 6017836 6018207 -136253237 - ERVL LTR ERVL -5067 697 298 415 249 79 42 chr9 6018653 6018818 -136252626 - LTR50 LTR ERVL -617 178 8 2341 71 0 0 chr9 6019047 6019378 -136252066 - AluY SINE Alu 0 333 3 682 301 160 33 chr9 6019417 6019843 -136251601 - MLT1K LTR MaLR -19 569 90 589 204 84 36 chr9 6020202 6020293 -136251151 - MIR SINE MIR -27 235 150 2560 107 120 5 chr9 6020293 6020677 -136250767 - MSTA LTR MaLR 0 428 1 589 204 84 36 chr9 6020677 6020752 -136250692 - MIR SINE MIR -112 150 61 266 346 58 6 chr9 6020824 6020980 -136250464 + L2 LINE L2 3146 3309 -4 4514 70 23 0 chr9 6021443 6022004 -136249440 + L1PA11 LINE L1 5596 6169 -5 1872 103 20 0 chr9 6023514 6023767 -136247677 + AluSx SINE Alu 34 291 -21 363 262 8 40 chr9 6023783 6023909 -136247535 - MIR SINE MIR -50 212 91 1996 164 0 0 chr9 6023946 6024245 -136247199 + AluJb SINE Alu 1 299 -13 225 283 61 30 chr9 6024280 6024379 -136247065 + L3 LINE CR1 398 499 -1078 828 297 183 73 chr9 6024437 6024555 -136246889 + L3 LINE CR1 647 751 -826 1980 162 0 0 chr9 6024555 6024857 -136246587 + AluJb SINE Alu 8 309 -3 828 297 183 73 chr9 6024857 6025084 -136246360 + L3 LINE CR1 751 952 -625 1931 155 3 3 chr9 6025084 6025381 -136246063 + AluJb SINE Alu 1 297 -15 828 297 183 73 chr9 6025381 6025870 -136245574 + L3 LINE CR1 952 1574 -3 300 261 136 11 chr9 6025877 6025965 -136245479 + MIR3 SINE MIR 99 197 -11 451 270 117 7 chr9 6027506 6027643 -136243801 + MIR SINE MIR 32 183 -79 2079 138 3 0 chr9 6027688 6027986 -136243458 - AluSx SINE Alu -13 299 1 21 71 0 0 chr9 6028367 6028409 -136243035 + AT_rich Low_complexity Low_complexity 1 42 0 213 59 0 29 chr9 6028445 6028479 -136242965 - L2 LINE L2 0 3272 3240 372 318 68 27 chr9 6029211 6029431 -136242013 - MIR SINE MIR -6 256 28 883 241 117 14 chr9 6030047 6030338 -136241106 - MER5C DNA MER1_type -2 322 2 2426 91 3 0 chr9 6030350 6030657 -136240787 - AluSx SINE Alu -4 308 1 192 152 0 0 chr9 6030760 6030793 -136240651 + T-rich Low_complexity Low_complexity 1 33 0 691 79 0 11 chr9 6031080 6031169 -136240275 - AluJb SINE Alu -194 118 31 220 196 0 39 chr9 6031934 6031985 -136239459 + L2 LINE L2 3262 3310 -3 382 225 200 8 chr9 6032515 6032635 -136238809 - MER5A DNA MER1_type 0 189 47 1016 101 51 6 chr9 6032635 6032793 -136238651 + MSTB LTR MaLR 1 165 -261 1750 193 90 69 chr9 6032801 6033310 -136238134 + MER21B LTR ERV1 299 818 -45 968 145 0 0 chr9 6033402 6033533 -136237911 - FLAM_C SINE Alu -2 131 1 1680 151 33 4 chr9 6034346 6034617 -136236827 + AluJb SINE Alu 1 279 -33 1015 198 68 34 chr9 6035640 6035877 -136235567 - MIR SINE MIR 0 262 18 343 298 89 0 chr9 6036494 6036618 -136234826 - MIR3 SINE MIR -4 204 70 291 274 27 0 chr9 6037461 6037534 -136233910 + L2 LINE L2 3184 3258 -14 231 163 20 20 chr9 6037535 6037584 -136233860 + GA-rich Low_complexity Low_complexity 2 50 0 597 262 115 0 chr9 6038198 6038381 -136233063 - MIR SINE MIR -52 210 7 266 236 167 0 chr9 6038550 6038622 -136232822 + MIR SINE MIR 63 146 -116 589 248 35 0 chr9 6038623 6038768 -136232676 + L1MC4a LINE L1 5674 5823 -1985 2352 137 2 68 chr9 6038768 6039192 -136232252 + MER61E LTR ERV1 54 449 -120 479 221 50 61 chr9 6039201 6039382 -136232062 + L1MC4a LINE L1 5812 5990 -1818 1287 265 38 19 chr9 6039451 6039902 -136231542 - LTR33 LTR ERVL -1 520 1 1755 118 49 26 chr9 6039973 6040279 -136231165 + AluSq SINE Alu 1 313 0 2054 97 18 4 chr9 6040618 6040933 -136230511 - AluSx SINE Alu 0 319 1 359 277 161 19 chr9 6041140 6041295 -136230149 - MER5B DNA MER1_type 0 178 2 356 299 90 57 chr9 6041343 6041587 -136229857 + L2 LINE L2 2839 3090 -182 934 284 56 40 chr9 6041706 6042210 -136229234 + L1ME4a LINE L1 5506 6017 -104 506 311 0 8 chr9 6042313 6042435 -136229009 - MER91A DNA MER1_type 0 196 76 409 303 55 0 chr9 6042463 6042608 -136228836 - L1ME3A LINE L1 -230 5940 5788 2201 283 82 39 chr9 6043243 6044962 -136226482 + L1MEc LINE L1 2141 3785 -2430 1850 167 3 10 chr9 6044962 6045290 -136226154 + AluJb SINE Alu 1 312 0 2201 283 82 39 chr9 6045290 6045301 -136226143 + L1MEc LINE L1 3785 3794 -2421 2151 122 0 0 chr9 6045301 6045614 -136225830 + AluSq SINE Alu 1 313 0 2201 283 82 39 chr9 6045614 6045689 -136225755 + L1MEc LINE L1 3794 3982 -2233 1221 266 81 75 chr9 6045709 6045932 -136225512 + L1MEc LINE L1 4136 4356 -1859 2162 107 7 3 chr9 6045932 6046223 -136225221 + AluSp SINE Alu 1 292 -21 1221 266 81 75 chr9 6046223 6046349 -136225095 + L1MEc LINE L1 4356 4480 -1735 2692 106 19 6 chr9 6046349 6046708 -136224736 + THE1B LTR MaLR 1 364 0 1221 266 81 75 chr9 6046708 6047525 -136223919 + L1MEc LINE L1 4480 5311 -904 558 270 92 25 chr9 6047529 6047725 -136223719 + MER63A DNA MER1_type 2 210 0 784 250 72 51 chr9 6047725 6047971 -136223473 + L1MEc LINE L1 5305 5544 -687 835 191 0 22 chr9 6047971 6048107 -136223337 + FLAM_A SINE Alu 1 133 0 784 250 72 51 chr9 6048107 6048364 -136223080 + L1MEc LINE L1 5544 5817 -414 1119 240 193 14 chr9 6048365 6048782 -136222662 - MLT2F LTR ERVL -3 660 93 258 121 172 35 chr9 6048788 6048846 -136222598 - MIR3 SINE MIR -46 162 97 30 69 0 0 chr9 6049673 6049731 -136221713 + AT_rich Low_complexity Low_complexity 1 58 0 32 0 0 0 chr9 6049891 6049923 -136221521 + AT_rich Low_complexity Low_complexity 1 32 0 381 213 12 0 chr9 6050340 6050420 -136221024 - LTR16A LTR ERVL -5 445 365 1989 89 4 0 chr9 6050639 6050896 -136220548 - L1PB1 LINE L1 -1 6150 5893 264 295 11 32 chr9 6051865 6051960 -136219484 - MIR SINE MIR -2 260 168 205 298 0 0 chr9 6051992 6052039 -136219405 - MIR SINE MIR -196 66 20 1537 249 66 10 chr9 6052155 6052549 -136218895 + LTR16C LTR ERVL 76 491 0 2322 102 0 0 chr9 6053050 6053343 -136218101 - AluSg SINE Alu -17 293 1 1787 120 69 4 chr9 6053528 6053804 -136217640 + AluSx SINE Alu 1 294 -18 2050 116 31 7 chr9 6054254 6054546 -136216898 - AluSx SINE Alu -13 299 1 203 86 0 29 chr9 6055152 6055187 -136216257 + (GAAA)n Simple_repeat Simple_repeat 3 36 0 787 219 125 5 chr9 6055620 6055812 -136215632 + MIR SINE MIR 48 262 0 407 304 28 66 chr9 6056317 6056498 -136214946 - MER5A DNA MER1_type -9 180 7 22 0 0 0 chr9 6056590 6056612 -136214832 + AT_rich Low_complexity Low_complexity 1 22 0 4399 117 26 48 chr9 6057077 6057811 -136213633 + L1MB2 LINE L1 5343 6060 -111 26 50 0 0 chr9 6058404 6058444 -136213000 + AT_rich Low_complexity Low_complexity 1 40 0 6131 133 60 34 chr9 6058493 6059103 -136212341 - Tigger3b DNA MER2_type -1797 1231 639 2363 90 0 0 chr9 6059103 6059404 -136212040 - AluSg SINE Alu -9 301 1 2055 123 3 29 chr9 6059406 6059716 -136211728 - AluSx SINE Alu -10 302 1 6131 133 60 34 chr9 6059716 6059858 -136211586 - Tigger3b DNA MER2_type -2389 639 502 1725 158 10 17 chr9 6059858 6060150 -136211294 - AluJo SINE Alu -14 298 9 6131 133 60 34 chr9 6060150 6060524 -136210920 - Tigger3b DNA MER2_type -2526 502 71 881 145 7 7 chr9 6060630 6060775 -136210669 - Tigger1 DNA MER2_type -185 2233 2089 2350 85 0 0 chr9 6060781 6061076 -136210368 - AluSc SINE Alu -14 295 1 1415 133 4 112 chr9 6061076 6061354 -136210090 - Tigger1 DNA MER2_type -864 1554 1307 9176 142 10 23 chr9 6061391 6062186 -136209258 - Tigger1 DNA MER2_type -921 1497 730 1660 174 27 20 chr9 6062186 6062480 -136208964 - AluJo SINE Alu -14 298 3 9176 142 10 23 chr9 6062480 6063147 -136208297 - Tigger1 DNA MER2_type -1688 730 55 1630 176 35 3 chr9 6063280 6063569 -136207875 - AluJb SINE Alu -14 298 1 2215 126 7 0 chr9 6063730 6064040 -136207404 + AluSx SINE Alu 1 312 0 380 253 55 0 chr9 6064191 6064282 -136207162 - Tigger1 DNA MER2_type -2254 164 69 880 104 0 0 chr9 6064284 6064399 -136207045 - AluSg/x SINE Alu -13 297 183 2367 95 3 0 chr9 6064523 6064828 -136206616 + AluSp SINE Alu 1 306 -7 2132 101 10 3 chr9 6065676 6065972 -136205472 - AluSx SINE Alu -14 298 1 23 68 0 0 chr9 6066918 6066962 -136204482 + GC_rich Low_complexity Low_complexity 1 44 0 227 189 94 0 chr9 6067138 6067191 -136204253 - L1ME LINE L1 -521 5600 5543 345 185 46 83 chr9 6067206 6067314 -136204130 - L1ME LINE L1 -688 5468 5363 359 264 99 40 chr9 6068145 6068309 -136203135 + L1ME4a LINE L1 5770 5923 -198 2330 63 0 7 chr9 6068309 6068626 -136202818 + AluY SINE Alu 1 315 0 2261 91 3 19 chr9 6068635 6068942 -136202502 + AluSx SINE Alu 1 302 -10 194 62 31 0 chr9 6068949 6068981 -136202463 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 359 264 99 40 chr9 6068981 6069119 -136202325 + L1ME4a LINE L1 5935 6110 -11 342 247 0 0 chr9 6069911 6069992 -136201452 + MIR SINE MIR 74 154 -108 1716 172 39 4 chr9 6070008 6070287 -136201157 + AluJb SINE Alu 1 289 -23 698 297 25 8 chr9 6070704 6070848 -136200596 + MIR SINE MIR 2 153 -109 234 0 0 0 chr9 6070848 6070874 -136200570 + (ATG)n Simple_repeat Simple_repeat 2 27 0 698 297 25 8 chr9 6070874 6070965 -136200479 + MIR SINE MIR 153 241 -21 233 297 45 45 chr9 6071078 6071189 -136200255 - MIR3 SINE MIR -92 116 6 629 252 122 32 chr9 6071783 6071894 -136199550 - L1ME4a LINE L1 -121 6000 5900 1588 197 13 7 chr9 6071894 6072203 -136199241 - AluJo SINE Alu -1 311 1 629 252 122 32 chr9 6072203 6072436 -136199008 - L1ME4a LINE L1 -221 5900 5625 585 280 100 47 chr9 6073618 6073883 -136197561 - L1ME4a LINE L1 -224 5897 5607 1753 158 47 10 chr9 6073883 6074181 -136197263 - AluJo SINE Alu -3 309 1 585 280 100 47 chr9 6074181 6074276 -136197168 - L1ME4a LINE L1 -514 5607 5518 1323 155 76 55 chr9 6074323 6074614 -136196830 - AluSx SINE Alu -13 299 3 270 239 46 15 chr9 6074812 6074942 -136196502 - L1ME LINE L1 -894 5252 5119 25 0 0 0 chr9 6074994 6075019 -136196425 + AT_rich Low_complexity Low_complexity 1 25 0 774 195 16 0 chr9 6075156 6075284 -136196160 + FLAM_A SINE Alu 1 130 -3 883 100 21 14 chr9 6076799 6076939 -136194505 + AluSg/x SINE Alu 168 308 -2 1750 211 88 25 chr9 6076978 6077509 -136193935 + L1MC2 LINE L1 4252 4816 -1330 * 2684 178 151 16 chr9 6077497 6078186 -136193258 + L1MC2 LINE L1 5569 6336 -8 1462 151 79 50 chr9 6078189 6078468 -136192976 - AluJo SINE Alu -25 287 1 2240 102 3 0 chr9 6078503 6078797 -136192647 + AluSg SINE Alu 1 295 -15 183 42 0 0 chr9 6078800 6078824 -136192620 + (TAAAAA)n Simple_repeat Simple_repeat 4 27 0 1960 195 165 7 chr9 6079305 6079741 -136191703 - MLT1D LTR MaLR 0 505 1 434 276 41 21 chr9 6079741 6079877 -136191567 + MIR SINE MIR 38 179 -83 2420 79 0 0 chr9 6079900 6080205 -136191239 - AluY SINE Alu 0 311 7 448 246 0 101 chr9 6080683 6080821 -136190623 - MIR3 SINE MIR -2 206 83 2165 121 3 3 chr9 6080852 6081150 -136190294 + AluSx SINE Alu 1 298 -14 1561 101 0 0 chr9 6081152 6081350 -136190094 + AluSq SINE Alu 1 198 -115 381 127 0 16 chr9 6081351 6081414 -136190030 + AluSq SINE Alu 239 300 -1 377 193 48 0 chr9 6081415 6081498 -136189946 + L1MCa LINE L1 1578 1664 -4762 * 5857 167 49 66 chr9 6081495 6082824 -136188620 + L1MCa LINE L1 17 1322 -5104 1157 150 9 44 chr9 6082824 6083050 -136188394 + AluSx SINE Alu 1 218 -94 1815 151 21 3 chr9 6084470 6084755 -136186689 + AluSx SINE Alu 1 290 -22 542 220 83 64 chr9 6085185 6085403 -136186041 + MER34 LTR ERV1 295 516 -26 662 268 56 6 chr9 6085418 6085597 -136185847 + MER5A DNA MER1_type 1 188 -1 186 103 0 0 chr9 6086569 6086598 -136184846 + (CCG)n Simple_repeat Simple_repeat 3 31 0 205 244 47 58 chr9 6086999 6087085 -136184359 - MIR SINE MIR -54 208 124 298 324 29 15 chr9 6087085 6087221 -136184223 - MIR SINE MIR 0 262 125 871 315 91 37 chr9 6087529 6088013 -136183431 + L2 LINE L2 2758 3271 -1 307 247 0 108 chr9 6088078 6088171 -136183273 + L2 LINE L2 3155 3237 -35 426 85 0 0 chr9 6088182 6088241 -136183203 + (TG)n Simple_repeat Simple_repeat 2 60 0 192 345 76 17 chr9 6088314 6088433 -136183011 + MIR SINE MIR 59 184 -78 242 56 28 0 chr9 6088433 6088469 -136182975 + (TAGA)n Simple_repeat Simple_repeat 1 37 0 * 432 0 0 0 chr9 6088468 6088516 -136182928 + (TG)n Simple_repeat Simple_repeat 1 48 0 755 267 88 44 chr9 6088720 6089016 -136182428 - L2 LINE L2 -9 3304 2996 291 355 41 8 chr9 6089129 6089250 -136182194 - L2 LINE L2 -10 3262 3138 197 33 33 0 chr9 6090007 6090037 -136181407 + (TGGA)n Simple_repeat Simple_repeat 1 31 0 270 307 135 26 chr9 6090134 6090326 -136181118 - MIR SINE MIR -29 233 21 282 287 9 43 chr9 6090539 6090654 -136180790 - MIR SINE MIR -72 190 80 313 278 70 17 chr9 6090745 6090860 -136180584 + MER117 DNA MER1_type 75 195 -2 243 171 0 0 chr9 6090980 6091021 -136180423 - L2 LINE L2 -19 3253 3213 1566 172 62 28 chr9 6091209 6091499 -136179945 + AluJo SINE Alu 1 300 -12 202 323 81 0 chr9 6091570 6091632 -136179812 + L2 LINE L2 3157 3223 -49 924 157 187 57 chr9 6091868 6092098 -136179346 - AluJo SINE Alu -13 299 40 1051 216 65 8 chr9 6092101 6092346 -136179098 + MSTD LTR MaLR 138 396 0 450 0 0 0 chr9 6092426 6092476 -136178968 + (TG)n Simple_repeat Simple_repeat 2 51 0 216 0 0 0 chr9 6092973 6092997 -136178447 + (T)n Simple_repeat Simple_repeat 1 24 0 1870 148 0 33 chr9 6093257 6093274 -136178170 - AluJo SINE Alu -19 293 277 186 71 0 0 chr9 6093274 6093302 -136178142 + (TATG)n Simple_repeat Simple_repeat 2 29 0 1870 148 0 33 chr9 6093302 6093587 -136177857 - AluJo SINE Alu -35 277 1 1675 171 7 52 chr9 6093593 6093902 -136177542 - AluJo SINE Alu -17 295 1 23 0 0 0 chr9 6094780 6094803 -136176641 + AT_rich Low_complexity Low_complexity 1 23 0 196 360 63 36 chr9 6095168 6095279 -136176165 - L2 LINE L2 -2 3270 3157 1663 159 0 34 chr9 6095320 6095616 -136175828 - AluJo SINE Alu 0 312 27 21 36 0 0 chr9 6095655 6095683 -136175761 + AT_rich Low_complexity Low_complexity 1 28 0 2342 103 3 3 chr9 6096236 6096547 -136174897 - AluSx SINE Alu -1 311 1 1427 194 7 4 chr9 6096547 6096809 -136174635 - L1MB5 LINE L1 -111 6063 5798 22 0 0 0 chr9 6096818 6096840 -136174604 + AT_rich Low_complexity Low_complexity 1 22 0 236 314 29 0 chr9 6097322 6097392 -136174052 - MIR SINE MIR -111 151 80 188 293 172 0 chr9 6097792 6097850 -136173594 - L2 LINE L2 -41 3231 3164 1218 64 146 0 chr9 6097870 6098041 -136173403 + MER30 DNA MER1_type 1 196 -34 22 0 0 0 chr9 6098250 6098272 -136173172 + AT_rich Low_complexity Low_complexity 1 22 0 230 318 199 0 chr9 6098336 6098487 -136172957 - MIR3 SINE MIR -12 196 16 495 205 139 0 chr9 6098529 6098680 -136172764 + MIR SINE MIR 89 260 -2 1528 134 119 32 chr9 6098932 6099209 -136172235 - AluSx SINE Alu -11 301 1 2656 173 41 15 chr9 6099363 6099905 -136171539 - MER34B LTR ERV1 0 565 10 668 177 44 0 chr9 6100036 6100149 -136171295 - FLAM_C SINE Alu -15 118 1 231 114 0 0 chr9 6100158 6100193 -136171251 + (TTCA)n Simple_repeat Simple_repeat 4 38 0 1325 90 22 0 chr9 6100193 6100371 -136171073 - AluY SINE Alu -30 281 100 512 99 0 0 chr9 6100373 6100454 -136170990 - AluY SINE Alu -49 262 182 989 102 29 0 chr9 6100454 6100591 -136170853 - AluYa8 SINE Alu -169 141 1 1191 106 116 10 chr9 6100707 6100914 -136170530 - MER30 DNA MER1_type -1 229 1 188 267 280 0 chr9 6101685 6101760 -136169684 - MIR SINE MIR -17 245 150 665 208 136 61 chr9 6101925 6102219 -136169225 - L1MC5 LINE L1 -25 7936 7621 407 265 43 8 chr9 6102681 6102798 -136168646 - L2 LINE L2 -5 3308 3188 1695 137 69 7 chr9 6103617 6103923 -136167521 + MER65A LTR ERV1 1 325 -120 3177 32 0 0 chr9 6103923 6104387 -136167057 + L1PA5 LINE L1 5576 6153 -1 771 114 38 15 chr9 6104394 6104526 -136166918 + MER65A LTR ERV1 309 443 -2 1775 166 6 25 chr9 6104670 6104984 -136166460 - AluJo SINE Alu 0 312 5 227 151 94 19 chr9 6105066 6105119 -136166325 + LTR67 LTR ERVL 501 557 0 211 211 118 145 chr9 6105148 6105300 -136166144 - MIR SINE MIR -80 182 35 578 167 72 100 chr9 6106558 6106598 -136164846 - MIR SINE MIR -34 228 188 2202 89 24 7 chr9 6106598 6106889 -136164555 - AluSp SINE Alu -17 296 1 578 167 72 100 chr9 6106889 6107028 -136164416 - MIR SINE MIR -74 188 54 501 252 107 39 chr9 6107621 6107827 -136163617 - MIR SINE MIR -24 238 19 1958 134 0 0 chr9 6108193 6108468 -136162976 + AluSx SINE Alu 1 275 -37 368 304 51 22 chr9 6108998 6109136 -136162308 + L2 LINE L2 2921 3062 -251 194 94 0 62 chr9 6109306 6109338 -136162106 - L3 LINE CR1 -25 1552 1523 8901 108 14 9 chr9 6109513 6110721 -136160723 + HSMAR1 DNA Mariner 1 1218 -69 2330 86 0 3 chr9 6110721 6111013 -136160431 + AluSc SINE Alu 1 291 -18 8901 108 14 9 chr9 6111013 6111084 -136160360 + HSMAR1 DNA Mariner 1218 1287 0 213 150 17 33 chr9 6112276 6112336 -136159108 + (TA)n Simple_repeat Simple_repeat 2 60 0 560 176 37 143 chr9 6113391 6113664 -136157780 - MER112 DNA MER1_type -6 254 11 1991 103 18 11 chr9 6113691 6114011 -136157433 + AluSp SINE Alu 1 322 0 181 160 20 20 chr9 6114038 6114088 -136157356 + GA-rich Low_complexity Low_complexity 2 51 0 378 0 0 0 chr9 6114934 6114976 -136156468 + (TG)n Simple_repeat Simple_repeat 2 43 0 1850 132 69 36 chr9 6114977 6115310 -136156134 - MER2 DNA MER2_type 0 344 1 282 317 10 30 chr9 6115363 6115464 -136155980 - MER5A DNA MER1_type 0 189 91 803 191 56 28 chr9 6115475 6115653 -136155791 + MIR SINE MIR 9 191 -71 234 0 0 0 chr9 6116614 6116640 -136154804 + (TTG)n Simple_repeat Simple_repeat 2 27 0 686 136 0 0 chr9 6116642 6116745 -136154699 - AluSc SINE Alu -18 291 189 22 70 0 0 chr9 6117140 6117183 -136154261 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr9 6117203 6117225 -136154219 + AT_rich Low_complexity Low_complexity 1 22 0 193 230 58 69 chr9 6117802 6117889 -136153555 + L3 LINE CR1 1491 1576 -1 21 57 0 0 chr9 6118423 6118458 -136152986 + AT_rich Low_complexity Low_complexity 1 35 0 493 236 203 0 chr9 6118694 6118817 -136152627 + MER5A DNA MER1_type 41 188 -1 335 130 159 0 chr9 6119813 6119882 -136151562 - MER116 DNA Mariner 0 80 1 22 0 0 0 chr9 6120890 6120912 -136150532 + AT_rich Low_complexity Low_complexity 1 22 0 1898 149 3 3 chr9 6122835 6123136 -136148308 + AluJo SINE Alu 1 301 -11 300 65 81 0 chr9 6123550 6123612 -136147832 + (TTATG)n Simple_repeat Simple_repeat 4 70 0 32 57 0 0 chr9 6123969 6124022 -136147422 + AT_rich Low_complexity Low_complexity 1 53 0 265 128 0 0 chr9 6124226 6124273 -136147171 - L1MC2 LINE L1 -9 6335 6289 22 35 0 0 chr9 6125091 6125120 -136146324 + AT_rich Low_complexity Low_complexity 1 29 0 2133 71 7 68 chr9 6125519 6125828 -136145616 + AluSg SINE Alu 1 290 -20 631 222 108 75 chr9 6126081 6126293 -136145151 + MER20 DNA MER1_type 1 219 0 23 0 0 0 chr9 6126991 6127014 -136144430 + AT_rich Low_complexity Low_complexity 1 23 0 211 369 63 36 chr9 6127379 6127490 -136143954 - L2 LINE L2 -2 3270 3157 26 0 0 27 chr9 6127523 6127545 -136143899 + AT_rich Low_complexity Low_complexity 1 23 -13 1653 160 0 28 chr9 6127545 6127827 -136143617 - AluJo SINE Alu -12 300 27 26 0 0 27 chr9 6127827 6127841 -136143603 + AT_rich Low_complexity Low_complexity 23 36 0 21 36 0 0 chr9 6127866 6127894 -136143550 + AT_rich Low_complexity Low_complexity 1 28 0 2199 90 7 3 chr9 6128447 6128737 -136142707 - AluSx SINE Alu -1 311 21 2096 122 3 7 chr9 6128768 6129064 -136142380 - AluSg SINE Alu -15 295 1 1717 187 3 0 chr9 6129644 6129938 -136141506 - AluJb SINE Alu -17 295 1 266 132 0 0 chr9 6131234 6131272 -136140172 + tRNA-Lys-AAG tRNA tRNA 1 38 -38 2013 147 0 22 chr9 6131346 6131658 -136139786 + AluSx SINE Alu 1 305 -7 21 0 0 0 chr9 6132853 6132874 -136138570 + AT_rich Low_complexity Low_complexity 1 21 0 29 47 0 0 chr9 6133074 6133117 -136138327 + AT_rich Low_complexity Low_complexity 1 43 0 1725 167 0 13 chr9 6133313 6133618 -136137826 + MER2 DNA MER2_type 1 301 -44 225 0 0 0 chr9 6135617 6135642 -136135802 + (TA)n Simple_repeat Simple_repeat 1 25 0 245 133 67 0 chr9 6135839 6135884 -136135560 + L1MB8 LINE L1 6131 6178 0 416 314 92 59 chr9 6136077 6136316 -136135128 + MIR SINE MIR 14 260 -2 21 36 0 0 chr9 6136599 6136627 -136134817 + AT_rich Low_complexity Low_complexity 1 28 0 4739 252 99 23 chr9 6137061 6138889 -136132555 - L2 LINE L2 -2 3311 1326 246 274 44 71 chr9 6138889 6139002 -136132442 - L3b LINE CR1 -84 1499 1390 263 182 61 15 chr9 6139102 6139168 -136132276 - MIR SINE MIR -97 165 97 2187 78 0 0 chr9 6139215 6139485 -136131959 + AluY SINE Alu 35 304 -7 1274 153 5 5 chr9 6139490 6139692 -136131752 + AluJb SINE Alu 87 288 -24 2138 107 0 0 chr9 6139796 6140068 -136131376 + AluSg SINE Alu 1 272 -38 2289 115 0 0 chr9 6140623 6140935 -136130509 - AluSx SINE Alu 0 312 1 1142 171 33 19 chr9 6141513 6141723 -136129721 + AluJo SINE Alu 84 296 -16 369 0 0 0 chr9 6146427 6146468 -136124976 + (TG)n Simple_repeat Simple_repeat 2 42 0 22 35 0 0 chr9 6146750 6146779 -136124665 + AT_rich Low_complexity Low_complexity 1 29 0 677 149 74 0 chr9 6147178 6147299 -136124145 - AluSg/x SINE Alu -12 300 171 257 119 0 85 chr9 6147299 6147358 -136124086 - MADE1 DNA Mariner 0 80 27 1065 127 42 0 chr9 6147408 6147574 -136123870 - AluJb SINE Alu -135 177 5 2050 101 3 62 chr9 6148152 6148460 -136122984 - AluSx SINE Alu -22 290 1 181 268 18 54 chr9 6148481 6148537 -136122907 + L2 LINE L2 2772 2825 -489 181 355 151 17 chr9 6148538 6148710 -136122734 + L2 LINE L2 2776 2970 -344 23 68 0 0 chr9 6149413 6149457 -136121987 + AT_rich Low_complexity Low_complexity 1 44 0 318 206 0 0 chr9 6149468 6149536 -136121908 + (TA)n Simple_repeat Simple_repeat 1 68 0 204 301 24 36 chr9 6150303 6150386 -136121058 - L2 LINE L2 -203 3069 2988 394 253 101 0 chr9 6150589 6150688 -136120756 + MIR SINE MIR 136 244 -18 2697 55 0 0 chr9 6151289 6151600 -136119844 + AluY SINE Alu 1 311 0 5769 153 32 38 chr9 6153614 6154177 -136117267 + L1 LINE L1 4115 4680 -1466 2271 108 10 0 chr9 6154177 6154484 -136116960 + AluSx SINE Alu 1 310 -2 5769 153 32 38 chr9 6154484 6155093 -136116351 + L1 LINE L1 4680 5280 -866 225 211 19 0 chr9 6155109 6155161 -136116283 - MLT1J LTR MaLR -149 362 310 1132 242 132 31 chr9 6155761 6156178 -136115266 - MER113 DNA MER1_type? -42 479 21 2421 76 3 0 chr9 6156454 6156745 -136114699 + AluSp SINE Alu 1 292 -21 951 211 32 0 chr9 6157800 6157985 -136113459 - MIR SINE MIR -71 191 1 1227 177 77 39 chr9 6157994 6158035 -136113409 - MER33 DNA MER1_type -2262 323 285 2271 114 0 0 chr9 6158035 6158341 -136113103 - AluSq SINE Alu -7 306 1 1227 177 77 39 chr9 6158341 6158610 -136112834 - MER33 DNA MER1_type -2300 285 1 493 121 55 22 chr9 6158835 6158926 -136112518 - L1MB3 LINE L1 -2 6181 6088 484 258 108 11 chr9 6159214 6159400 -136112044 + MIR SINE MIR 49 252 -10 1778 97 136 60 chr9 6159444 6159664 -136111780 + L1MCa LINE L1 1723 1981 -4445 1314 209 87 7 chr9 6159664 6159941 -136111503 - AluJo SINE Alu -2 300 2 1778 97 136 60 chr9 6159941 6160072 -136111372 + L1MCa LINE L1 1981 2101 -4325 1702 211 23 8 chr9 6160073 6160424 -136111020 - MER4D LTR ERV1 0 903 548 429 132 60 24 chr9 6160423 6160532 -136110912 - MER4E LTR ERV1 -588 284 62 * 1536 166 55 7 chr9 6160506 6160795 -136110649 - MER49 LTR ERV1 -620 303 1 6333 180 45 91 chr9 6160795 6160939 -136110505 + L1MCa LINE L1 2099 2248 -4178 2304 104 0 0 chr9 6160939 6161238 -136110206 + AluY SINE Alu 1 299 -12 2064 110 28 14 chr9 6161247 6161537 -136109907 + AluSx SINE Alu 1 294 -18 6333 180 45 91 chr9 6161537 6161853 -136109591 + L1MCa LINE L1 2256 2585 -3841 2213 112 0 3 chr9 6161853 6162148 -136109296 + AluSx SINE Alu 1 294 -18 6333 180 45 91 chr9 6162148 6163205 -136108239 + L1MCa LINE L1 2585 3689 -2737 1553 154 0 126 chr9 6163205 6163562 -136107882 + AluJo SINE Alu 1 312 0 6333 180 45 91 chr9 6163562 6164190 -136107254 + L1MCa LINE L1 3689 4122 -2304 2043 144 0 10 chr9 6164190 6164496 -136106948 + AluJb SINE Alu 1 303 -9 6333 180 45 91 chr9 6164496 6164847 -136106597 + L1MCa LINE L1 4122 4487 -1939 204 247 165 17 chr9 6164949 6165085 -136106359 - MER5A DNA MER1_type -23 155 3 30 27 0 0 chr9 6165610 6165647 -136105797 + AT_rich Low_complexity Low_complexity 1 37 0 347 250 135 0 chr9 6166176 6166272 -136105172 - L2 LINE L2 -23 3249 3141 2101 167 32 47 chr9 6167473 6167677 -136103767 + MSTD LTR MaLR 1 198 -198 1556 127 69 33 chr9 6167677 6167953 -136103491 + AluJb SINE Alu 12 297 -15 2101 167 32 47 chr9 6167953 6168150 -136103294 + MSTD LTR MaLR 198 396 0 558 283 73 34 chr9 6168838 6169071 -136102373 - MIR SINE MIR 0 262 21 277 337 11 0 chr9 6169580 6169672 -136101772 - MIR3 SINE MIR -8 200 108 486 281 119 5 chr9 6169692 6169877 -136101567 - MIR SINE MIR -1 261 56 215 254 113 14 chr9 6169900 6169971 -136101473 - MIR3 SINE MIR -125 83 6 483 326 17 6 chr9 6170228 6170406 -136101038 + MER5A DNA MER1_type 9 188 -1 22 0 0 0 chr9 6170606 6170628 -136100816 + AT_rich Low_complexity Low_complexity 1 22 0 834 247 155 43 chr9 6171109 6171737 -136099707 + LTR50 LTR ERVL 3 787 -8 405 279 163 7 chr9 6171941 6172088 -136099356 + MIR SINE MIR 8 177 -85 303 271 225 7 chr9 6172117 6172268 -136099176 + MLT1J LTR MaLR 170 353 -158 182 367 127 13 chr9 6172824 6172903 -136098541 + L2 LINE L2 3133 3220 -52 527 62 0 0 chr9 6175388 6175453 -136095991 + HSMAR1 DNA Mariner 1223 1287 0 603 97 0 174 chr9 6175590 6175745 -136095699 - MER53 DNA DNA -19 170 43 616 159 0 28 chr9 6175755 6175862 -136095582 - U13 snRNA snRNA 0 104 1 495 279 29 23 chr9 6176899 6177071 -136094373 - MER5A DNA MER1_type 0 189 17 289 234 0 85 chr9 6177312 6177365 -136094079 + L2 LINE L2 3208 3251 -62 1041 210 83 5 chr9 6177365 6177570 -136093874 - MER58A DNA MER1_type -3 221 1 289 234 0 85 chr9 6177570 6177610 -136093834 + L2 LINE L2 3251 3293 -20 363 169 28 0 chr9 6178410 6178481 -136092963 - MER116 DNA Mariner -5 75 3 237 227 53 27 chr9 6181081 6181156 -136090288 - L1M3f LINE L1 -5022 306 230 425 325 38 19 chr9 6181946 6182103 -136089341 - L2 LINE L2 -3 3269 3110 668 262 38 99 chr9 6182168 6182391 -136089053 + MLT1J LTR MaLR 1 236 -275 1969 156 3 19 chr9 6182391 6182705 -136088739 + AluJo SINE Alu 1 309 -3 668 262 38 99 chr9 6182705 6182777 -136088667 + MLT1J LTR MaLR 236 311 -200 2188 194 29 52 chr9 6182777 6183293 -136088151 - MLT1D LTR MaLR -1 504 1 668 262 38 99 chr9 6183293 6183439 -136088005 + MLT1J LTR MaLR 311 416 -95 253 300 80 0 chr9 6183522 6183622 -136087822 - L2 LINE L2 -237 3035 2928 1939 123 0 0 chr9 6183971 6184231 -136087213 + AluSx SINE Alu 31 290 -22 250 356 0 0 chr9 6184342 6184401 -136087043 + G-rich Low_complexity Low_complexity 1 59 0 320 169 34 0 chr9 6184434 6184493 -136086951 + LTR40a LTR ERVL 457 517 -2 205 171 0 0 chr9 6184495 6184536 -136086908 + A-rich Low_complexity Low_complexity 3 43 0 344 205 25 57 chr9 6184650 6184772 -136086672 + L1MC4 LINE L1 7098 7215 -827 338 305 117 15 chr9 6184781 6184978 -136086466 + L1MC4 LINE L1 7274 7490 -552 1796 88 0 0 chr9 6185364 6185591 -136085853 - AluY SINE Alu 0 311 85 2413 97 3 0 chr9 6185602 6185912 -136085532 - AluSx SINE Alu 0 312 2 21 0 0 0 chr9 6186003 6186024 -136085420 + AT_rich Low_complexity Low_complexity 1 21 0 2239 86 41 0 chr9 6186332 6186622 -136084822 - AluSx SINE Alu -10 302 1 569 248 33 8 chr9 6187021 6187142 -136084302 + L2 LINE L2 3190 3313 0 21 36 0 0 chr9 6187556 6187584 -136083860 + AT_rich Low_complexity Low_complexity 1 28 0 3578 212 74 30 chr9 6187902 6188187 -136083257 + L1ME1 LINE L1 4724 4995 -1171 2206 103 0 7 chr9 6188187 6188469 -136082975 - AluSx SINE Alu -31 281 2 3578 212 74 30 chr9 6188469 6189554 -136081890 + L1ME1 LINE L1 4995 6161 -5 517 279 49 11 chr9 6189618 6189801 -136081643 - LTR33A LTR ERVL -2 521 332 656 280 213 17 chr9 6189801 6190204 -136081240 - LTR50 LTR ERVL -306 489 8 1029 199 35 87 chr9 6190307 6190528 -136080916 - L1MC5 LINE L1 -728 7233 7071 1729 165 22 41 chr9 6190528 6190844 -136080600 + AluJo SINE Alu 1 310 -2 1029 199 35 87 chr9 6190844 6191031 -136080413 - L1MC5 LINE L1 -890 7071 6876 6393 130 30 65 chr9 6191890 6193621 -136077823 - HERVH LTR ERV1 -5916 1797 1 3112 92 11 9 chr9 6193623 6194070 -136077374 - LTR7 LTR ERV1 -2 448 1 294 308 27 104 chr9 6194081 6194380 -136077064 + L2 LINE L2 2804 3079 -193 2466 77 0 0 chr9 6194576 6194875 -136076569 - AluSc SINE Alu -10 299 1 2344 80 0 43 chr9 6194922 6195248 -136076196 - AluSx SINE Alu 0 312 1 553 192 54 42 chr9 6195252 6195426 -136076018 - L1MC/D LINE L1 -589 5575 5395 21 0 0 0 chr9 6195438 6195459 -136075985 + AT_rich Low_complexity Low_complexity 1 21 0 2354 122 0 0 chr9 6195533 6195845 -136075599 + AluSx SINE Alu 1 312 0 339 344 38 38 chr9 6195898 6196081 -136075363 - MER5A DNA MER1_type 0 189 7 2289 98 0 0 chr9 6196122 6196409 -136075035 - AluSc SINE Alu -22 287 1 2277 99 3 13 chr9 6196872 6197184 -136074260 + AluSc SINE Alu 1 309 0 226 340 46 46 chr9 6197244 6197397 -136074047 - MIR3 SINE MIR -39 169 17 213 270 0 16 chr9 6197421 6197484 -136073960 + MER5A DNA MER1_type 127 188 -1 1592 151 69 7 chr9 6197542 6197847 -136073597 - L1MB8 LINE L1 0 6178 5855 1980 125 10 3 chr9 6197919 6198214 -136073230 + AluJb SINE Alu 1 297 -15 183 314 186 0 chr9 6202967 6203053 -136068391 + MIR SINE MIR 161 262 0 282 271 81 27 chr9 6203228 6203431 -136068013 + L1ME4a LINE L1 5878 6095 -26 2211 105 10 3 chr9 6203431 6203736 -136067708 - AluSq SINE Alu -6 307 1 282 271 81 27 chr9 6203736 6203753 -136067691 + L1ME4a LINE L1 6095 6110 -11 440 168 193 0 chr9 6204046 6204165 -136067279 + MIR SINE MIR 121 262 0 206 224 0 20 chr9 6205691 6205740 -136065704 + C-rich Low_complexity Low_complexity 2 49 0 22 89 0 0 chr9 6205922 6205967 -136065477 + GC_rich Low_complexity Low_complexity 1 45 0 24 53 0 0 chr9 6206020 6206058 -136065386 + GC_rich Low_complexity Low_complexity 1 38 0 300 305 71 108 chr9 6206286 6206748 -136064696 - L1M2 LINE L1 -5761 1088 644 768 184 55 18 chr9 6207775 6207938 -136063506 + MIR SINE MIR 91 259 -3 238 217 22 0 chr9 6208408 6208454 -136062990 - L3 LINE CR1 -7 1570 1524 23 33 0 0 chr9 6208562 6208592 -136062852 + AT_rich Low_complexity Low_complexity 1 30 0 1936 85 22 0 chr9 6208596 6208866 -136062578 - AluSx SINE Alu -36 276 1 269 269 60 0 chr9 6209642 6209709 -136061735 + MIR3 SINE MIR 89 159 -49 356 238 25 0 chr9 6210130 6210210 -136061234 + Charlie7 DNA MER1_type 3 84 -2528 37 39 0 0 chr9 6210293 6210344 -136061100 + AT_rich Low_complexity Low_complexity 1 51 0 21 0 0 0 chr9 6210882 6210903 -136060541 + AT_rich Low_complexity Low_complexity 1 21 0 1684 166 30 27 chr9 6211111 6211407 -136060037 + AluSq SINE Alu 2 298 -15 213 186 0 23 chr9 6211846 6211889 -136059555 - L2 LINE L2 -5 3267 3226 236 296 84 0 chr9 6212428 6212499 -136058945 - L2 LINE L2 -5 3267 3191 224 357 137 15 chr9 6212578 6213032 -136058412 - L2 LINE L2 -376 2938 2430 393 263 50 12 chr9 6213908 6214068 -136057376 + L1ME4a LINE L1 5951 6116 -5 192 274 119 24 chr9 6214225 6214309 -136057135 - L2 LINE L2 -1 3271 3180 272 318 88 46 chr9 6214339 6214515 -136056929 - L2 LINE L2 -310 2962 2793 23 0 0 0 chr9 6214994 6215017 -136056427 + AT_rich Low_complexity Low_complexity 1 23 0 310 320 98 7 chr9 6215918 6216071 -136055373 + L2 LINE L2 2307 2473 -841 260 276 145 41 chr9 6216189 6216334 -136055110 + L2 LINE L2 3154 3313 0 1965 150 0 38 chr9 6217467 6217787 -136053657 + AluSx SINE Alu 4 311 -1 22 56 0 0 chr9 6217903 6217939 -136053505 + AT_rich Low_complexity Low_complexity 1 36 0 292 303 183 6 chr9 6217947 6218122 -136053322 + L2 LINE L2 2195 2400 -914 242 327 111 7 chr9 6218418 6218571 -136052873 - L2 LINE L2 -1354 1960 1792 2347 82 3 3 chr9 6218895 6219199 -136052245 + AluSp SINE Alu 1 304 -9 613 240 74 4 chr9 6219727 6220224 -136051220 - Charlie7 DNA MER1_type 0 2612 2020 1492 251 122 9 chr9 6220226 6220685 -136050759 + LTR33 LTR ERVL 1 511 -10 585 131 82 112 chr9 6220695 6220758 -136050686 - Charlie7 DNA MER1_type -591 2021 1958 2254 102 10 0 chr9 6220758 6221061 -136050383 - AluSx SINE Alu -6 306 1 585 131 82 112 chr9 6221061 6221203 -136050241 - Charlie7 DNA MER1_type -654 1958 1822 21 36 0 0 chr9 6221628 6221656 -136049788 + AT_rich Low_complexity Low_complexity 1 28 0 1017 302 79 23 chr9 6221800 6222349 -136049095 - L2 LINE L2 -14 3299 2705 2154 125 0 7 chr9 6222349 6222654 -136048790 - AluSx SINE Alu -9 303 1 1017 302 79 23 chr9 6222654 6222767 -136048677 - L2 LINE L2 -608 2705 2600 189 0 0 0 chr9 6222893 6222914 -136048530 + (TA)n Simple_repeat Simple_repeat 1 21 0 666 318 84 14 chr9 6222968 6223453 -136047991 - L1MC4a LINE L1 -1903 5974 5456 21 36 0 0 chr9 6223819 6223847 -136047597 + AT_rich Low_complexity Low_complexity 1 28 0 1900 125 45 3 chr9 6224266 6224554 -136046890 + AluJb SINE Alu 1 300 -12 860 169 38 76 chr9 6224775 6224959 -136046485 - AluJb SINE Alu -10 302 126 2284 96 3 13 chr9 6224959 6225273 -136046171 - AluSp SINE Alu -2 311 1 24 53 0 0 chr9 6226009 6226047 -136045397 + AT_rich Low_complexity Low_complexity 1 38 0 196 375 0 0 chr9 6226184 6226240 -136045204 - L3 LINE CR1 -1 1576 1521 192 255 43 0 chr9 6226386 6226433 -136045011 - MIR SINE MIR -60 148 100 591 253 10 3 chr9 6227048 6227244 -136044200 - MIR SINE MIR 0 262 6 23 0 0 0 chr9 6227550 6227573 -136043871 + AT_rich Low_complexity Low_complexity 1 23 0 4763 77 22 2 chr9 6227608 6228248 -136043196 + L1PA10 LINE L1 5507 6159 -9 1939 241 104 22 chr9 6228387 6228409 -136043035 - L1MC4a LINE L1 -847 5368 5349 2352 94 3 0 chr9 6228409 6228718 -136042726 - AluSp SINE Alu -3 310 1 1939 241 104 22 chr9 6228718 6229578 -136041866 - L1MC4a LINE L1 -866 5349 4365 509 222 36 30 chr9 6229574 6229741 -136041703 - L1MC4a LINE L1 -3633 2582 2415 * 1443 240 84 57 chr9 6229717 6230215 -136041229 - L1MC4a LINE L1 -4257 2139 1611 396 0 0 0 chr9 6230215 6230259 -136041185 + (TG)n Simple_repeat Simple_repeat 2 45 0 1443 240 84 57 chr9 6230259 6230547 -136040897 - L1MC4a LINE L1 -4785 1611 1332 286 190 175 36 chr9 6230557 6230694 -136040750 - L1MC4a LINE L1 -5267 1129 974 615 296 89 25 chr9 6230706 6231101 -136040343 - L1MC4a LINE L1 -5483 913 494 273 231 0 0 chr9 6231161 6231213 -136040231 - MER2 DNA MER2_type 0 345 294 405 358 55 12 chr9 6231308 6231473 -136039971 - L1MC4a LINE L1 -6012 384 213 2283 138 104 3 chr9 6231474 6231858 -136039586 - MSTC LTR MaLR 0 428 6 571 243 40 12 chr9 6231872 6232045 -136039399 - L1MC4a LINE L1 -6183 213 36 210 143 0 0 chr9 6232153 6232188 -136039256 + (CATA)n Simple_repeat Simple_repeat 2 36 0 1080 59 0 0 chr9 6232190 6232325 -136039119 - L1PB1 LINE L1 -7 6144 6010 310 269 48 87 chr9 6232349 6232557 -136038887 - L1ME3 LINE L1 -295 5867 5668 548 97 18 26 chr9 6232558 6232671 -136038773 + (TAGA)n Simple_repeat Simple_repeat 2 113 0 216 290 145 0 chr9 6232671 6232733 -136038711 + L2 LINE L2 2250 2320 -994 357 331 70 6 chr9 6232937 6233094 -136038350 - LTR33 LTR ERVL -265 256 90 219 69 0 0 chr9 6233268 6233297 -136038147 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2135 132 7 0 chr9 6234177 6234487 -136036957 - AluSx SINE Alu 0 312 1 1852 148 20 10 chr9 6234687 6234990 -136036454 - AluJb SINE Alu -6 306 1 415 350 0 21 chr9 6235195 6235338 -136036106 + LTR67 LTR ERVL 13 152 -405 467 233 40 45 chr9 6235501 6235677 -136035767 + LTR67 LTR ERVL 380 554 -3 2294 70 42 0 chr9 6236371 6236656 -136034788 - AluY SINE Alu -14 297 1 195 320 48 39 chr9 6237091 6237194 -136034250 + MIR SINE MIR 41 144 -64 624 190 83 24 chr9 6238036 6238241 -136033203 - HAL1 LINE L1 -30 2477 2261 2181 206 71 36 chr9 6238514 6238756 -136032688 - L1MEc LINE L1 -5227 1169 937 2309 106 3 13 chr9 6238756 6239068 -136032376 - AluSq SINE Alu -4 309 1 2181 206 71 36 chr9 6239068 6239443 -136032001 - L1MEc LINE L1 -5459 937 530 1193 255 66 45 chr9 6239471 6239867 -136031577 - L1MEc LINE L1 -5955 441 38 532 285 68 41 chr9 6239888 6240299 -136031145 - L1MEc LINE L1 -4729 1667 1246 1744 174 24 0 chr9 6240317 6240615 -136030829 - AluJo SINE Alu -7 305 1 2134 132 0 0 chr9 6240749 6241037 -136030407 - AluSx SINE Alu -24 288 1 250 284 67 8 chr9 6241261 6241395 -136030049 - HAL1 LINE L1 -862 1645 1504 2270 191 34 0 chr9 6241395 6241813 -136029631 - MSTB1 LTR MaLR 0 432 1 393 321 82 51 chr9 6241832 6242443 -136029001 - L1MEc LINE L1 -5167 1038 409 23 33 0 0 chr9 6242529 6242559 -136028885 + AT_rich Low_complexity Low_complexity 1 30 0 1794 182 76 50 chr9 6242749 6243142 -136028302 - L1M4 LINE L1 -435 5749 5317 2204 125 0 3 chr9 6243142 6243453 -136027991 - AluSq SINE Alu -3 310 1 1794 182 76 50 chr9 6243453 6243760 -136027684 - L1M4 LINE L1 -867 5317 5019 23 0 0 0 chr9 6243936 6243959 -136027485 + AT_rich Low_complexity Low_complexity 1 23 0 2240 102 0 7 chr9 6244376 6244680 -136026764 + AluSx SINE Alu 1 302 -10 2283 114 0 0 chr9 6247464 6247771 -136023673 + AluSg SINE Alu 1 307 -3 28 0 0 0 chr9 6247781 6247809 -136023635 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr9 6247826 6247854 -136023590 + AT_rich Low_complexity Low_complexity 1 28 0 464 203 133 31 chr9 6248450 6248511 -136022933 - MER103 DNA DNA 0 166 113 555 253 119 66 chr9 6248511 6248831 -136022613 - MER46C DNA MER2_type -1 337 1 464 203 133 31 chr9 6248831 6248897 -136022547 - MER103 DNA DNA -53 113 26 14261 23 2 0 chr9 6249152 6252076 -136019368 - L1PA2 LINE L1 0 6155 3227 2003 19 0 0 chr9 6252072 6252329 -136019115 + L1PA2 LINE L1 2981 3237 -2909 * 23 0 0 0 chr9 6252715 6252738 -136018706 + AT_rich Low_complexity Low_complexity 1 23 0 446 250 55 30 chr9 6253244 6253444 -136018000 - L1ME4a LINE L1 -205 5916 5712 2421 91 0 0 chr9 6253634 6253942 -136017502 - AluSq SINE Alu -5 308 1 703 212 42 94 chr9 6254693 6254905 -136016539 - MIR SINE MIR -3 259 59 593 130 10 0 chr9 6255601 6255701 -136015743 - FLAM_A SINE Alu -26 116 16 27 0 0 0 chr9 6256407 6256434 -136015010 + AT_rich Low_complexity Low_complexity 1 27 0 379 294 95 50 chr9 6256630 6256851 -136014593 + MIR SINE MIR 20 250 -12 592 296 42 19 chr9 6256891 6257107 -136014337 + MIR SINE MIR 35 255 -7 251 376 73 18 chr9 6257327 6257436 -136014008 - L2 LINE L2 -50 3222 3108 774 222 53 113 chr9 6257592 6257858 -136013586 - MIR SINE MIR -3 259 10 2352 110 0 0 chr9 6259108 6259416 -136012028 - AluSq SINE Alu -5 308 1 3127 99 12 12 chr9 6259575 6260061 -136011383 - MER41A LTR ERV1 -68 486 1 480 267 105 53 chr9 6260068 6260315 -136011129 - HAL1 LINE L1 -1172 1335 1076 567 81 12 0 chr9 6260349 6260435 -136011009 - L1M4 LINE L1 -3424 2722 2636 237 211 0 0 chr9 6262213 6262270 -136009174 + (TA)n Simple_repeat Simple_repeat 1 57 0 1984 62 0 4 chr9 6262939 6263180 -136008264 + AluSc SINE Alu 61 300 -9 4700 163 49 37 chr9 6265049 6266339 -136005105 - L1MA9 LINE L1 -5 7726 6416 396 104 0 0 chr9 6266348 6266415 -136005029 - L1MA3 LINE L1 -1 6304 6238 339 62 44 239 chr9 6266415 6266477 -136004967 - L1MA2 LINE L1 -196 6108 6076 1599 193 44 0 chr9 6266477 6266751 -136004693 - AluJo SINE Alu -26 286 1 339 62 44 239 chr9 6266751 6266801 -136004643 - L1MA2 LINE L1 -228 6076 6018 11554 153 45 70 chr9 6266805 6267081 -136004363 - L1MA9 LINE L1 -1139 6426 6145 1629 181 40 27 chr9 6267081 6267451 -136003993 + THE1C LTR MaLR 1 375 0 11554 153 45 70 chr9 6267451 6267782 -136003662 - L1MA9 LINE L1 -1420 6145 5807 2249 120 3 0 chr9 6267782 6268090 -136003354 - AluSq SINE Alu -4 309 1 11554 153 45 70 chr9 6268090 6268483 -136002961 - L1MA9 LINE L1 -1758 5807 5406 3294 115 33 4 chr9 6268483 6268523 -136002921 - L1MA2 LINE L1 0 6304 6267 1879 161 0 31 chr9 6268523 6268840 -136002604 - AluJb SINE Alu -5 307 1 3294 115 33 4 chr9 6268840 6269345 -136002099 - L1MA2 LINE L1 -37 6267 5743 11554 153 45 70 chr9 6269345 6270387 -136001057 - L1MA9 LINE L1 -2159 5406 4340 1665 187 38 0 chr9 6270387 6270676 -136000768 - AluJb SINE Alu -12 300 1 11554 153 45 70 chr9 6270676 6272565 -135998879 - L1MA9 LINE L1 -3225 4340 2654 2439 64 3 0 chr9 6272565 6272862 -135998582 - AluY SINE Alu -13 298 1 11554 153 45 70 chr9 6272862 6274184 -135997260 - L1MA9 LINE L1 -4911 2654 1301 287 263 184 11 chr9 6274291 6274481 -135996963 + MER113 DNA MER1_type? 5 227 -294 1224 177 0 32 chr9 6274491 6274711 -135996733 + AluJb SINE Alu 3 215 -97 557 202 0 0 chr9 6274894 6274988 -135996456 + AluJb SINE Alu 198 291 -21 362 275 72 18 chr9 6275029 6275196 -135996248 + MER113 DNA MER1_type? 297 472 -49 30 59 0 0 chr9 6275247 6275298 -135996146 + AT_rich Low_complexity Low_complexity 1 51 0 793 242 57 8 chr9 6275583 6275847 -135995597 - L1ME1 LINE L1 -48 6118 5842 920 196 63 1 chr9 6275854 6276058 -135995386 - L1PB4 LINE L1 -2 6164 5948 1240 228 112 36 chr9 6276058 6276569 -135994875 - L1ME1 LINE L1 -339 5827 5320 964 240 65 0 chr9 6276579 6276808 -135994636 - AluJo SINE Alu -66 246 3 373 153 41 31 chr9 6276809 6276907 -135994537 - L1ME1 LINE L1 -821 5325 5227 * 3469 177 39 49 chr9 6276906 6277803 -135993641 - L1MB3 LINE L1 -65 6820 5934 483 200 62 76 chr9 6277809 6277954 -135993490 + Tigger3(Golem) DNA MER2_type 1 143 -2886 * 1375 169 4 11 chr9 6277950 6278210 -135993234 + Tigger3(Golem) DNA MER2_type 2771 3028 -1 2946 267 35 16 chr9 6278210 6279363 -135992081 - L1MB3 LINE L1 -920 5928 4727 1960 142 0 37 chr9 6279363 6279408 -135992036 - AluSx SINE Alu 0 312 267 558 43 0 0 chr9 6279408 6279477 -135991967 + (TGG)n Simple_repeat Simple_repeat 2 70 0 1960 142 0 37 chr9 6279477 6279755 -135991689 - AluSx SINE Alu -45 267 1 2946 267 35 16 chr9 6279755 6279895 -135991549 - L1MB3 LINE L1 -2121 4727 4591 2655 135 41 3 chr9 6279888 6280471 -135990973 - L1M1 LINE L1 -541 5762 5164 * 751 164 8 8 chr9 6280494 6280622 -135990822 + AluJb SINE Alu 172 299 -13 433 230 7 30 chr9 6280624 6280759 -135990685 + L1 LINE L1 2764 2895 -3251 7242 216 55 37 chr9 6280760 6282891 -135988553 - L1MB3 LINE L1 -4679 2170 1 6600 162 35 18 chr9 6282890 6283030 -135988414 - L1M1 LINE L1 -1011 5135 4999 * 2213 113 7 13 chr9 6283030 6283339 -135988105 - AluSx SINE Alu -5 307 1 6600 162 35 18 chr9 6283339 6284599 -135986845 - L1M1 LINE L1 -1147 4999 3711 1599 221 14 45 chr9 6284601 6285057 -135986387 - L1M4 LINE L1 -1194 4952 4512 2233 136 0 0 chr9 6285057 6285367 -135986077 - AluSg SINE Alu 0 310 1 1599 221 14 45 chr9 6285367 6285422 -135986022 - L1M4 LINE L1 -1634 4512 4457 1351 153 5 23 chr9 6285475 6285690 -135985754 - AluJb SINE Alu -16 296 86 2101 130 3 13 chr9 6285703 6286019 -135985425 - AluSq SINE Alu 0 313 1 1759 144 26 52 chr9 6286019 6286324 -135985120 - AluSq SINE Alu -15 298 1 2411 220 58 74 chr9 6286354 6286763 -135984681 - L1M4 LINE L1 -1793 4353 3939 2227 117 3 0 chr9 6286763 6287072 -135984372 - AluSq SINE Alu -3 310 1 2411 220 58 74 chr9 6287072 6287337 -135984107 - L1M4 LINE L1 -2207 3939 3695 2347 82 0 13 chr9 6287337 6287641 -135983803 - AluY SINE Alu -11 300 1 2411 220 58 74 chr9 6287641 6287885 -135983559 - L1M4 LINE L1 -2451 3695 3449 452 359 42 9 chr9 6288856 6289073 -135982371 - MIR SINE MIR -5 257 34 2402 235 62 13 chr9 6289210 6289903 -135981541 + Cheshire DNA MER1_type 1 727 -1693 1202 220 33 3 chr9 6289894 6290194 -135981250 + Cheshire DNA MER1_type 940 1248 -1172 * 783 200 29 44 chr9 6290197 6290589 -135980855 + Cheshire DNA MER1_type 1373 2249 -171 959 206 31 182 chr9 6290599 6291317 -135980127 - L1M4 LINE L1 -1222 4924 4316 * 19874 156 21 10 chr9 6291312 6295599 -135975845 - L1PA11 LINE L1 -5 7607 3272 2202 94 7 17 chr9 6295599 6295896 -135975548 + AluSc SINE Alu 1 294 -15 19874 156 21 10 chr9 6295896 6296458 -135974986 - L1PA11 LINE L1 -4340 3272 2718 1073 143 15 0 chr9 6296464 6296660 -135974784 - L1P LINE L1 -3577 2569 2371 * 2297 205 45 30 chr9 6296656 6297721 -135973723 - L1PA11 LINE L1 -3551 4033 983 1537 222 109 2 chr9 6297722 6298274 -135973170 - L1M4 LINE L1 -1804 4840 4195 647 251 66 29 chr9 6298293 6298514 -135972930 - L1M4 LINE L1 -2713 3931 3689 1457 221 10 0 chr9 6298514 6298803 -135972641 + AluJo SINE Alu 1 292 -20 647 251 66 29 chr9 6298803 6298959 -135972485 - L1M4 LINE L1 -2955 3689 3540 1925 151 7 3 chr9 6298976 6299275 -135972169 - AluJo SINE Alu -12 300 1 624 72 10 21 chr9 6299305 6299402 -135972042 - THE1C-int LTR MaLR -1484 96 1 2549 105 13 8 chr9 6299402 6299775 -135971669 - THE1C LTR MaLR 0 375 1 2079 226 94 23 chr9 6299776 6300662 -135970782 - L1M4 LINE L1 -4833 1709 835 2410 74 0 12 chr9 6300681 6301020 -135970424 - L1PB1 LINE L1 -75 6076 5742 2393 122 129 9 chr9 6301078 6301511 -135969933 - MER31A LTR ERV1 0 485 1 21 0 0 0 chr9 6301916 6301937 -135969507 + AT_rich Low_complexity Low_complexity 1 21 0 2373 133 81 60 chr9 6302143 6302639 -135968805 - LTR8A LTR ERV1 0 727 222 1981 127 0 20 chr9 6302717 6303047 -135968397 - AluSx SINE Alu 0 324 1 413 337 96 38 chr9 6304029 6304427 -135967017 + HAL1 LINE L1 1181 1601 -906 439 291 156 14 chr9 6304691 6305007 -135966437 + L1MC4a LINE L1 5299 5569 -558 210 37 0 0 chr9 6305007 6305034 -135966410 + (TA)n Simple_repeat Simple_repeat 1 27 0 439 291 156 14 chr9 6305034 6305252 -135966192 + L1MC4a LINE L1 5569 5932 -195 227 292 108 0 chr9 6305610 6305740 -135965704 + L1ME4a LINE L1 5978 6121 0 2977 90 33 11 chr9 6305953 6306407 -135965037 + MER4C LTR ERV1 2 465 0 1924 165 138 37 chr9 6306424 6306910 -135964534 - LTR10A LTR ERV1 -61 548 14 1336 92 61 0 chr9 6307375 6307571 -135963873 + LTR8A LTR ERV1 1 208 -519 759 162 0 0 chr9 6307571 6307688 -135963756 - FLAM_C SINE Alu -26 117 1 743 211 12 19 chr9 6307872 6308033 -135963411 - MIR SINE MIR -29 233 74 2521 230 48 11 chr9 6308201 6308862 -135962582 - L1ME1 LINE L1 -192 6043 5358 1071 214 70 0 chr9 6308864 6309149 -135962295 - L1ME1 LINE L1 -1191 5024 4720 42520 43 11 5 chr9 6309324 6312287 -135959157 - L1PA4 LINE L1 -3 6152 3208 2860 7 0 0 chr9 6312287 6312597 -135958847 - AluY SINE Alu -1 310 1 42520 43 11 5 chr9 6312597 6315745 -135955699 - L1PA4 LINE L1 -2947 3208 7 243 0 0 0 chr9 6315746 6315773 -135955671 + (C)n Simple_repeat Simple_repeat 1 27 0 4077 230 138 31 chr9 6315775 6316560 -135954884 - L1ME1 LINE L1 -1508 4707 4007 7838 26 0 0 chr9 6316560 6318261 -135953183 + L1PA2 LINE L1 4453 6154 -1 4077 230 138 31 chr9 6318261 6319170 -135952274 - L1ME1 LINE L1 -2208 4007 2833 373 184 23 23 chr9 6319157 6319244 -135952200 - L1ME1 LINE L1 -4472 1924 1838 * 22 0 0 0 chr9 6319263 6319285 -135952159 + AT_rich Low_complexity Low_complexity 1 22 0 469 258 129 41 chr9 6319310 6319698 -135951746 - L1ME1 LINE L1 -5142 1254 833 * 761 268 39 9 chr9 6319690 6319921 -135951523 - L1ME1 LINE L1 -6066 330 93 2459 68 0 10 chr9 6320512 6320822 -135950622 - AluY SINE Alu -4 307 1 197 116 0 23 chr9 6322403 6322446 -135948998 + (TAAAA)n Simple_repeat Simple_repeat 3 44 0 25 31 0 0 chr9 6322460 6322492 -135948952 + AT_rich Low_complexity Low_complexity 1 32 0 331 296 59 30 chr9 6322540 6322709 -135948735 + L1ME4a LINE L1 5743 5916 -205 566 317 95 21 chr9 6323643 6323886 -135947558 + MIR SINE MIR 2 262 0 255 313 104 22 chr9 6324084 6324218 -135947226 + MIR SINE MIR 77 221 -41 735 256 103 0 chr9 6324308 6324511 -135946933 - MIR SINE MIR -38 224 1 450 292 141 48 chr9 6326391 6326703 -135944741 - L2 LINE L2 -42 3271 2931 2283 100 7 0 chr9 6327043 6327342 -135944102 - AluSx SINE Alu -11 301 1 295 65 0 87 chr9 6328176 6328222 -135943222 - L1ME LINE L1 -512 5654 5613 893 281 127 27 chr9 6328225 6328925 -135942519 - L1MEc LINE L1 -5571 825 56 193 267 22 0 chr9 6329260 6329305 -135942139 - L2 LINE L2 -18 3254 3209 197 324 93 86 chr9 6330098 6330237 -135941207 + MIR3 SINE MIR 21 160 -48 1907 177 80 6 chr9 6330618 6330968 -135940476 + MER6A DNA MER2_type 43 418 -187 31 18 0 53 chr9 6332034 6332091 -135939353 + AT_rich Low_complexity Low_complexity 1 54 0 22 70 0 0 chr9 6332286 6332329 -135939115 + AT_rich Low_complexity Low_complexity 1 43 0 1775 123 67 7 chr9 6332800 6333084 -135938360 + AluSx SINE Alu 1 301 -11 1804 98 130 144 chr9 6333750 6334002 -135937442 - MSTA LTR MaLR 0 428 183 1997 110 3 26 chr9 6334002 6334310 -135937134 - AluSx SINE Alu -3 309 9 1804 98 130 144 chr9 6334310 6334487 -135936957 - MSTA LTR MaLR -245 183 5 2123 136 26 6 chr9 6334496 6334841 -135936603 - MSTA-int LTR MaLR -6 1645 1294 9368 210 86 49 chr9 6334848 6335687 -135935757 - L1MB8 LINE L1 -78 6336 5530 1674 186 27 3 chr9 6335687 6335983 -135935461 - AluJo SINE Alu -9 303 1 9368 210 86 49 chr9 6335983 6337650 -135933794 - L1MB8 LINE L1 -884 5530 3927 2013 114 21 4 chr9 6337650 6337930 -135933514 + AluSc SINE Alu 3 287 -22 9368 210 86 49 chr9 6337930 6339127 -135932317 - L1MB8 LINE L1 -2487 3927 2776 246 32 0 0 chr9 6339127 6339158 -135932286 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 9368 210 86 49 chr9 6339158 6339442 -135932002 - L1MB8 LINE L1 -3638 2776 2504 270 56 0 0 chr9 6339442 6339478 -135931966 + (TTG)n Simple_repeat Simple_repeat 1 36 0 9368 210 86 49 chr9 6339478 6340427 -135931017 - L1MB8 LINE L1 -3910 2504 1162 670 286 18 23 chr9 6340546 6340717 -135930727 - MLT1I LTR MaLR -191 218 49 423 344 48 11 chr9 6340873 6341062 -135930382 + MIR SINE MIR 50 245 -17 1208 278 115 35 chr9 6341833 6342711 -135928733 + HAL1 LINE L1 586 1533 -974 281 273 61 18 chr9 6342793 6342958 -135928486 - L1MC5 LINE L1 -188 7773 7602 22 35 0 0 chr9 6343026 6343055 -135928389 + AT_rich Low_complexity Low_complexity 1 29 0 6490 40 0 0 chr9 6343055 6343828 -135927616 - L1PA5 LINE L1 -8 6146 5374 1557 39 20 0 chr9 6343827 6344031 -135927413 + L1PA5 LINE L1 5156 5363 -783 * 236 247 41 0 chr9 6344073 6344146 -135927298 + HAL1 LINE L1 2432 2507 0 23 92 0 0 chr9 6345654 6345719 -135925725 + AT_rich Low_complexity Low_complexity 1 65 0 248 241 96 0 chr9 6346086 6346169 -135925275 + L1MC/D LINE L1 5801 5891 -1917 187 272 136 0 chr9 6346841 6346922 -135924522 + MIR3 SINE MIR 89 180 -28 294 73 0 0 chr9 6347254 6347295 -135924149 + (TCCCC)n Simple_repeat Simple_repeat 5 45 0 1499 139 20 90 chr9 6347315 6347616 -135923828 - AluJb SINE Alu -32 280 1 2067 111 14 24 chr9 6347797 6348094 -135923350 + AluSg SINE Alu 1 294 -16 691 164 16 8 chr9 6348319 6348441 -135923003 - FLAM_A SINE Alu -10 123 1 324 275 84 35 chr9 6348492 6348774 -135922670 - L1MEc LINE L1 -4933 1659 1344 3311 105 91 36 chr9 6348908 6349034 -135922410 - LTR24C LTR ERV1 0 635 517 2009 123 27 0 chr9 6349034 6349326 -135922118 + AluSx SINE Alu 1 300 -12 2440 84 3 0 chr9 6349330 6349638 -135921806 + AluSx SINE Alu 1 309 -3 3311 105 91 36 chr9 6349638 6350108 -135921336 - LTR24C LTR ERV1 -120 515 1 21 36 0 0 chr9 6350183 6350211 -135921233 + AT_rich Low_complexity Low_complexity 1 28 0 200 259 61 61 chr9 6350569 6350716 -135920728 + L2 LINE L2 1964 2110 -1204 227 279 76 0 chr9 6350741 6350820 -135920624 - L2 LINE L2 -13 3300 3216 355 308 51 8 chr9 6350898 6351015 -135920429 + L2 LINE L2 3150 3271 -1 878 208 31 16 chr9 6351065 6351257 -135920187 - MER3 DNA MER1_type -8 201 7 812 292 78 25 chr9 6352413 6352727 -135918717 - HAL1 LINE L1 -76 2431 2080 1659 136 65 127 chr9 6352727 6353176 -135918268 - MER61B LTR ERV1 -4 421 1 812 292 78 25 chr9 6353176 6353350 -135918094 - HAL1 LINE L1 -427 2080 1917 2238 107 3 0 chr9 6353351 6353659 -135917785 - AluSp SINE Alu -4 309 1 21 0 0 0 chr9 6353727 6353748 -135917696 + AT_rich Low_complexity Low_complexity 1 21 0 306 0 0 0 chr9 6353820 6353854 -135917590 + (TG)n Simple_repeat Simple_repeat 2 35 0 39832 73 8 3 chr9 6354034 6360147 -135911297 - L1PA5 LINE L1 -8 6146 3 492 259 54 7 chr9 6360148 6360295 -135911149 - HAL1 LINE L1 -585 1922 1769 850 316 103 58 chr9 6360353 6361129 -135910315 - HAL1 LINE L1 -1693 814 4 21 0 0 0 chr9 6361731 6361752 -135909692 + AT_rich Low_complexity Low_complexity 1 21 0 433 215 69 15 chr9 6361846 6361976 -135909468 + L1ME3A LINE L1 5810 5946 -224 793 310 46 20 chr9 6362268 6362749 -135908695 + L2 LINE L2 2753 3313 0 437 289 234 15 chr9 6363178 6363379 -135908065 - MIR SINE MIR -13 249 5 209 356 0 14 chr9 6363475 6363548 -135907896 - L2 LINE L2 -50 3263 3192 286 287 130 9 chr9 6364425 6364533 -135906911 - L2 LINE L2 -2 3311 3191 2196 67 17 17 chr9 6364735 6365034 -135906410 - AluY SINE Alu -12 299 1 401 206 130 54 chr9 6365212 6365490 -135905954 - L1 LINE L1 -2365 3781 3465 286 98 61 0 chr9 6365491 6365573 -135905871 + (TA)n Simple_repeat Simple_repeat 2 88 0 2071 126 10 0 chr9 6365573 6365875 -135905569 - AluSg SINE Alu -5 305 1 279 291 45 8 chr9 6365885 6366019 -135905425 - L1 LINE L1 -2672 3474 3336 326 170 113 70 chr9 6366199 6366350 -135905094 - L1ME3 LINE L1 -287 5875 5733 422 310 55 30 chr9 6366354 6366683 -135904761 - L1MC4 LINE L1 -214 7828 7492 349 302 189 0 chr9 6367262 6367431 -135904013 - L1MC4 LINE L1 -546 7496 7296 888 257 81 40 chr9 6367753 6368123 -135903321 + L1MEc LINE L1 43 427 -5969 * 957 166 90 18 chr9 6368121 6368344 -135903100 + L1MEc LINE L1 996 1234 -5162 21 36 0 0 chr9 6368819 6368847 -135902597 + AT_rich Low_complexity Low_complexity 1 28 0 2242 141 49 33 chr9 6369098 6369523 -135901921 - Tigger2a DNA MER2_type -2 432 1 576 229 70 84 chr9 6369536 6369871 -135901573 - L1ME3A LINE L1 -333 5837 5514 189 0 0 0 chr9 6370017 6370038 -135901406 + (T)n Simple_repeat Simple_repeat 1 21 0 13668 68 15 6 chr9 6370124 6371890 -135899554 - HERVL-A1 LTR ERVL -3872 1782 1 3427 51 13 27 chr9 6371890 6372340 -135899104 - MLT2A1 LTR ERVL 0 444 1 1021 286 113 43 chr9 6372526 6373731 -135897713 - L1MEd LINE L1 -4656 1473 269 230 309 114 65 chr9 6374670 6374793 -135896651 - L2 LINE L2 -6 3307 3179 1102 145 56 23 chr9 6375279 6375493 -135895951 - AluJo SINE Alu -11 301 81 1783 139 100 9 chr9 6375908 6376239 -135895205 - MER46B DNA MER2_type 0 236 1 428 353 42 32 chr9 6376798 6376988 -135894456 - MIR3 SINE MIR -2 206 15 24 0 0 0 chr9 6377686 6377710 -135893734 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr9 6377793 6377817 -135893627 + AT_rich Low_complexity Low_complexity 1 24 0 336 290 48 0 chr9 6377946 6378070 -135893374 + MER103 DNA DNA 34 163 -3 182 216 0 0 chr9 6380233 6380270 -135891174 + MIR3 SINE MIR 172 208 0 517 196 45 15 chr9 6380489 6380622 -135890822 - MIR3 SINE MIR -5 203 67 2500 74 6 3 chr9 6381236 6381548 -135889896 - AluSq SINE Alu 0 313 1 2109 103 4 0 chr9 6382845 6383126 -135888318 - AluSx SINE Alu -30 282 1 2169 113 17 0 chr9 6383906 6384207 -135887237 - AluSq SINE Alu -7 306 1 195 304 54 0 chr9 6384891 6384947 -135886497 - L2 LINE L2 -4 3268 3210 210 118 0 0 chr9 6385485 6385519 -135885925 + (TG)n Simple_repeat Simple_repeat 2 35 0 383 352 93 10 chr9 6385549 6385742 -135885702 - MIR SINE MIR -6 256 48 21 0 0 0 chr9 6385815 6385836 -135885608 + AT_rich Low_complexity Low_complexity 1 21 0 1901 121 10 17 chr9 6385916 6386206 -135885238 + AluSx SINE Alu 1 288 -24 28 0 0 0 chr9 6386283 6386311 -135885133 + AT_rich Low_complexity Low_complexity 1 28 0 1762 148 93 3 chr9 6386735 6387046 -135884398 - MER44D DNA MER2_type 0 609 1 2106 117 0 0 chr9 6387112 6387426 -135884018 + AluSx SINE Alu 1 314 0 217 372 64 11 chr9 6388995 6389089 -135882355 - L2 LINE L2 -4 3268 3170 448 372 202 2 chr9 6389191 6389613 -135881831 - L2 LINE L2 -209 3063 2550 410 250 44 127 chr9 6389940 6390201 -135881243 - L3 LINE CR1 -202 1375 1143 2358 96 0 13 chr9 6390201 6390514 -135880930 - AluSc SINE Alu 0 309 1 410 250 44 127 chr9 6390514 6390568 -135880876 - L3 LINE CR1 -434 1143 1086 306 305 130 37 chr9 6390713 6390959 -135880485 + L1MC4 LINE L1 7381 7649 -393 228 171 0 0 chr9 6390972 6391007 -135880437 - tRNA-Val-GTG tRNA tRNA -39 37 3 565 234 94 61 chr9 6391020 6391383 -135880061 + L1MC5 LINE L1 7551 7925 -36 205 211 0 0 chr9 6391430 6391468 -135879976 + L3 LINE CR1 1081 1118 -459 208 313 116 36 chr9 6391598 6391710 -135879734 + L3 LINE CR1 1384 1504 -73 2427 84 0 7 chr9 6392576 6392885 -135878559 - AluSg SINE Alu -3 307 1 21 36 0 0 chr9 6392972 6393000 -135878444 + AT_rich Low_complexity Low_complexity 1 28 0 282 296 112 18 chr9 6393020 6393189 -135878255 + L2 LINE L2 2356 2540 -774 206 218 18 36 chr9 6393857 6393912 -135877532 + L2 LINE L2 3242 3295 -18 380 300 140 0 chr9 6396551 6396701 -135874743 + MIR SINE MIR 86 256 -6 1993 134 3 0 chr9 6397528 6397812 -135873632 - AluSx SINE Alu -27 285 1 4593 111 22 4 chr9 6397825 6398540 -135872904 - L1PB1 LINE L1 -2 6149 5422 203 226 0 19 chr9 6398995 6399048 -135872396 + MIR SINE MIR 210 261 -1 2358 84 3 0 chr9 6399062 6399358 -135872086 - AluSp SINE Alu -16 297 1 745 253 107 9 chr9 6399371 6399596 -135871848 - MIR SINE MIR -14 248 2 1734 157 7 20 chr9 6399720 6400013 -135871431 + AluJo SINE Alu 6 294 -18 1334 142 6 120 chr9 6401959 6402318 -135869126 + Cheshire DNA MER1_type 2103 2420 0 2158 192 102 17 chr9 6402539 6403205 -135868239 - L1MB1 LINE L1 -28 6161 5436 1203 221 124 53 chr9 6403228 6403848 -135867596 - L1MC5 LINE L1 -52 7909 7246 34 0 0 0 chr9 6404646 6404680 -135866764 + AT_rich Low_complexity Low_complexity 1 34 0 320 356 27 20 chr9 6404983 6405132 -135866312 + MIR3 SINE MIR 38 187 -21 25 0 0 0 chr9 6408131 6408156 -135863288 + AT_rich Low_complexity Low_complexity 1 25 0 513 136 0 0 chr9 6408401 6408489 -135862955 - L1MB7 LINE L1 -217 5967 5880 573 198 190 12 chr9 6408504 6408761 -135862683 - L1MB7 LINE L1 -700 5484 5188 3338 206 154 29 chr9 6408970 6410171 -135861273 - L1MB7 LINE L1 -944 5202 3834 1663 200 7 0 chr9 6410171 6410461 -135860983 - AluJb SINE Alu -20 292 1 3338 206 154 29 chr9 6410461 6410518 -135860926 - L1MB7 LINE L1 -2312 3834 3786 11145 124 30 128 chr9 6410678 6413518 -135857926 + L1PA7 LINE L1 12 2570 -3576 8225 70 15 5 chr9 6413521 6415431 -135856013 + L1PA7 LINE L1 4217 6150 -4 229 308 162 0 chr9 6419257 6419374 -135852070 + MIR SINE MIR 20 155 -107 419 293 74 36 chr9 6420527 6421002 -135850442 + HAL1b LINE L1 153 645 -703 437 202 48 0 chr9 6421026 6421110 -135850334 - AluJb SINE Alu -22 290 203 226 171 0 0 chr9 6421137 6421178 -135850266 - Alu SINE Alu -33 269 229 1379 186 27 4 chr9 6421186 6421449 -135849995 - AluJo SINE Alu -43 269 1 829 98 0 0 chr9 6421641 6421753 -135849691 - AluSg/x SINE Alu -2 310 199 498 329 69 23 chr9 6421800 6422309 -135849135 + L1MDa LINE L1 2417 2953 -3587 582 176 30 30 chr9 6422328 6422459 -135848985 + L1ME2 LINE L1 6021 6151 -13 216 67 0 0 chr9 6422643 6422673 -135848771 + (GA)n Simple_repeat Simple_repeat 2 31 0 1740 174 46 17 chr9 6422678 6423029 -135848415 - MLT2D LTR ERVL -53 361 1 262 312 136 30 chr9 6423236 6423435 -135848009 - L2 LINE L2 -8 3305 3086 518 198 236 0 chr9 6424179 6424361 -135847083 + L1MCa LINE L1 2099 2323 -4103 * 7872 211 48 26 chr9 6424352 6426969 -135844475 + L1MC2 LINE L1 1840 4540 -1886 2362 95 7 0 chr9 6426969 6427275 -135844169 + AluSg SINE Alu 1 308 -2 7872 211 48 26 chr9 6427275 6427845 -135843599 + L1MC2 LINE L1 4540 5096 -1330 2431 169 122 19 chr9 6427833 6428519 -135842925 + L1MC2 LINE L1 5849 6610 -14 * 1507 151 77 49 chr9 6428519 6428804 -135842640 - AluJo SINE Alu -19 293 1 2431 169 122 19 chr9 6428804 6428816 -135842628 + L1MC2 LINE L1 6610 6619 -5 2454 84 0 0 chr9 6428839 6429138 -135842306 + AluSg SINE Alu 1 299 -11 2347 80 3 0 chr9 6429688 6429987 -135841457 - AluSp SINE Alu -13 300 1 717 243 109 0 chr9 6431025 6431227 -135840217 + MER58A DNA MER1_type 1 224 0 2208 116 0 3 chr9 6431864 6432165 -135839279 + AluSx SINE Alu 1 300 -12 2094 137 0 3 chr9 6433857 6434156 -135837288 - AluSx SINE Alu -13 299 2 769 119 0 0 chr9 6434397 6434533 -135836911 + AluSg/x SINE Alu 176 311 0 1785 161 0 39 chr9 6437900 6438211 -135833233 - AluJb SINE Alu -13 299 1 2177 128 0 0 chr9 6438935 6439239 -135832205 + AluSx SINE Alu 1 304 -8 735 148 17 9 chr9 6439477 6439592 -135831852 - FLAM_C SINE Alu -25 118 3 1696 137 76 4 chr9 6440208 6440490 -135830954 - AluJb SINE Alu 0 301 1 2378 48 10 0 chr9 6440501 6440791 -135830653 - AluY SINE Alu -18 293 1 517 265 53 20 chr9 6441024 6441175 -135830269 - L2 LINE L2 0 3313 3158 25 0 0 0 chr9 6442427 6442452 -135828992 + AT_rich Low_complexity Low_complexity 1 25 0 198 171 0 0 chr9 6442803 6442844 -135828600 + A-rich Low_complexity Low_complexity 1 41 0 296 304 78 48 chr9 6442954 6443184 -135828260 + L2 LINE L2 1739 1975 -1339 273 280 160 10 chr9 6443147 6443247 -135828197 - L2 LINE L2 -3 3269 3155 * 247 246 90 0 chr9 6444856 6444924 -135826520 - L1ME LINE L1 -213 5908 5848 1397 140 35 0 chr9 6444924 6445152 -135826292 - MER46A DNA MER2_type 0 236 1 247 246 90 0 chr9 6445152 6445205 -135826239 - L1ME LINE L1 -273 5848 5776 23 33 0 0 chr9 6445218 6445248 -135826196 + AT_rich Low_complexity Low_complexity 1 30 0 226 240 13 0 chr9 6445321 6445396 -135826048 + (TA)n Simple_repeat Simple_repeat 1 76 0 599 290 34 65 chr9 6445507 6445831 -135825613 + MLT1I LTR MaLR 93 406 -3 1881 132 44 14 chr9 6445932 6446227 -135825217 + AluSx SINE Alu 1 304 -8 302 234 0 0 chr9 6446252 6446329 -135825115 + L1MCc LINE L1 1386 1462 -4961 301 273 47 53 chr9 6446350 6446500 -135824944 + L1MCc LINE L1 1675 1823 -5108 288 306 16 15 chr9 6446527 6446680 -135824764 + L1MCc LINE L1 1816 2069 -4862 1763 219 91 34 chr9 6446702 6447327 -135824117 + L1MC4 LINE L1 6785 7445 -597 23 78 0 0 chr9 6447385 6447436 -135824008 + AT_rich Low_complexity Low_complexity 1 51 0 332 258 126 0 chr9 6447653 6447820 -135823624 + L1MC4 LINE L1 7634 7821 -221 413 218 78 62 chr9 6447837 6448016 -135823428 - L1M4 LINE L1 -2243 3903 3722 646 235 143 0 chr9 6448037 6448254 -135823190 + L1ME4a LINE L1 5585 5832 -338 268 328 9 69 chr9 6448254 6448370 -135823074 - MIR SINE MIR -130 132 24 2335 90 0 0 chr9 6448370 6448669 -135822775 - AluY SINE Alu -12 299 1 2385 72 0 7 chr9 6448669 6448961 -135822483 - AluSx SINE Alu -22 290 1 376 221 127 70 chr9 6449333 6449491 -135821953 - L2 LINE L2 -1317 1997 1831 622 179 19 0 chr9 6449539 6449645 -135821799 + FRAM SINE Alu 53 160 -16 565 265 99 0 chr9 6449651 6449832 -135821612 - L2 LINE L2 -1502 1812 1614 1882 179 10 0 chr9 6449905 6450212 -135821232 + AluJo SINE Alu 1 310 -2 374 288 167 1 chr9 6450236 6450415 -135821029 - L1MC/D LINE L1 -460 5661 5459 2220 189 42 14 chr9 6450476 6450751 -135820693 + L1MB8 LINE L1 5577 5874 -304 2490 126 22 38 chr9 6450751 6451203 -135820241 + MER65A LTR ERV1 1 445 0 2220 189 42 14 chr9 6451203 6451424 -135820020 + L1MB8 LINE L1 5874 6087 -91 2141 110 3 0 chr9 6451489 6451780 -135819664 + AluSx SINE Alu 1 292 -20 262 238 10 50 chr9 6451838 6451939 -135819505 + L1ME4a LINE L1 5936 6032 -89 1825 172 7 0 chr9 6453442 6453738 -135817706 + AluJb SINE Alu 1 298 -14 1234 29 0 7 chr9 6454279 6454419 -135817025 + MER85 DNA T2_type 1 139 0 1692 169 37 10 chr9 6454473 6454769 -135816675 + AluJb SINE Alu 1 304 -8 983 237 47 0 chr9 6454958 6455190 -135816254 + MIR SINE MIR 12 254 -8 856 137 0 0 chr9 6455762 6455879 -135815565 + AluJo/FLAM SINE Alu 1 117 -185 312 159 111 0 chr9 6455879 6455942 -135815502 - AluSp/q SINE Alu -2 301 232 1383 209 72 70 chr9 6456043 6456444 -135815000 - LTR40a LTR ERVL -95 424 23 867 286 133 29 chr9 6456498 6456875 -135814569 + LTR33 LTR ERVL 99 514 -7 341 284 54 27 chr9 6457021 6457169 -135814275 + L1M4 LINE L1 3792 3943 -2203 373 256 171 18 chr9 6457314 6457478 -135813966 + MER5A DNA MER1_type 1 189 0 898 98 81 0 chr9 6457492 6457615 -135813829 - FLAM_C SINE Alu 0 133 1 310 257 57 74 chr9 6457645 6457820 -135813624 - HAL1 LINE L1 -10 2497 2326 1853 96 146 0 chr9 6457977 6458238 -135813206 - AluSq SINE Alu -4 299 1 2376 74 0 36 chr9 6458319 6458628 -135812816 + AluY SINE Alu 1 298 -13 1718 120 32 0 chr9 6458724 6458974 -135812470 - AluSc SINE Alu -16 293 36 921 195 16 16 chr9 6459278 6459463 -135811981 - AluJo SINE Alu -7 305 121 27 49 0 0 chr9 6459799 6459840 -135811604 + AT_rich Low_complexity Low_complexity 1 41 0 2196 113 0 31 chr9 6460051 6460369 -135811075 + AluSx SINE Alu 3 310 -2 7172 187 132 8 chr9 6460495 6461905 -135809539 + L1PA13 LINE L1 1 1585 -5202 5868 107 53 2 chr9 6461908 6463205 -135808239 + L1PA13 LINE L1 4817 6163 0 1042 135 53 6 chr9 6464016 6464186 -135807258 - L1PB3 LINE L1 -1 6869 6692 12613 235 62 65 chr9 6464434 6465841 -135805603 - L1PB3 LINE L1 -164 6706 5296 2104 134 3 3 chr9 6465841 6466148 -135805296 - AluSq SINE Alu -6 307 1 12613 235 62 65 chr9 6466148 6467468 -135803976 - L1PB3 LINE L1 -1574 5296 3973 2006 133 0 44 chr9 6467468 6467785 -135803659 - AluSx SINE Alu -9 303 1 12613 235 62 65 chr9 6467785 6470189 -135801255 - L1PB3 LINE L1 -2897 3973 2682 2193 122 20 0 chr9 6470189 6470493 -135800951 - AluSx SINE Alu -2 310 1 12613 235 62 65 chr9 6470493 6473165 -135798279 - L1PB3 LINE L1 -4188 2682 3 255 384 58 0 chr9 6473645 6473731 -135797713 - MIR SINE MIR -90 118 28 1683 87 4 13 chr9 6473905 6474136 -135797308 + AluSq SINE Alu 44 272 -41 745 16 63 0 chr9 6474238 6474343 -135797101 - L1P1 LINE L1 -670 5484 5374 271 0 51 0 chr9 6474682 6474721 -135796723 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 7584 22 0 0 chr9 6474725 6475583 -135795861 - L1PA3 LINE L1 0 6155 5298 * 41614 71 6 2 chr9 6475578 6480946 -135790498 - L1P LINE L1 -756 5390 5 574 267 37 19 chr9 6482984 6483145 -135788299 - MIR SINE MIR -93 169 6 359 262 19 19 chr9 6483423 6483530 -135787914 - MIR SINE MIR -26 236 130 3393 60 2 10 chr9 6484415 6484830 -135786614 + L1PA5 LINE L1 5743 6154 0 379 231 161 0 chr9 6485071 6485201 -135786243 - L1MC5 LINE L1 -48 7913 7763 602 180 9 0 chr9 6485907 6486018 -135785426 - Charlie4 DNA MER1_type -34 1927 1816 391 298 7 64 chr9 6486706 6486847 -135784597 + MLT1I LTR MaLR 22 154 -255 198 167 0 0 chr9 6486849 6486885 -135784559 + CT-rich Low_complexity Low_complexity 2 37 0 728 171 0 0 chr9 6486895 6487000 -135784444 - FLAM_C SINE Alu -21 122 18 739 266 41 18 chr9 6487037 6487259 -135784185 + MLT1I LTR MaLR 184 450 0 315 235 12 12 chr9 6487306 6487387 -135784057 - MIR SINE MIR -110 152 72 180 225 25 0 chr9 6487739 6487779 -135783665 + MER5B DNA MER1_type 13 53 -125 237 311 76 98 chr9 6487989 6488266 -135783178 + L2 LINE L2 2924 3194 -78 21 0 0 0 chr9 6488294 6488315 -135783129 + GC_rich Low_complexity Low_complexity 1 21 0 546 242 95 38 chr9 6488688 6488899 -135782545 - L2 LINE L2 0 3313 3091 180 0 0 0 chr9 6489208 6489228 -135782216 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1101 216 24 111 chr9 6489236 6489607 -135781837 + MSTD LTR MaLR 1 339 -57 514 147 10 10 chr9 6489607 6489709 -135781735 + CT-rich Low_complexity Low_complexity 3 104 0 5204 91 11 14 chr9 6489722 6490418 -135781026 - L1PA13 LINE L1 -14 6149 5456 507 100 0 0 chr9 6490419 6490489 -135780955 + MSTD LTR MaLR 388 457 0 1737 157 0 35 chr9 6490637 6490923 -135780521 - AluJo SINE Alu -36 276 1 365 280 107 33 chr9 6491504 6491654 -135779790 + LTR16C LTR ERVL 322 482 -9 1318 81 27 27 chr9 6492450 6492635 -135778809 + AluY SINE Alu 1 185 -126 1639 170 3 39 chr9 6493247 6493559 -135777885 + AluJo SINE Alu 1 301 -11 2032 95 4 0 chr9 6493572 6493835 -135777609 - AluSq SINE Alu -6 307 44 1616 267 42 56 chr9 6494065 6495121 -135776323 - HERVI LTR ERV1 -6646 1139 23 3738 110 12 2 chr9 6495147 6495655 -135775789 - LTR10D LTR ERV1 0 513 1 220 313 163 0 chr9 6495932 6496079 -135775365 - L2 LINE L2 -1226 2088 1918 235 248 86 68 chr9 6496417 6496470 -135774974 - MER103 DNA DNA -37 129 78 2224 118 0 0 chr9 6496470 6496774 -135774670 - AluSx SINE Alu -8 304 1 235 248 86 68 chr9 6496774 6496837 -135774607 - MER103 DNA DNA -88 78 11 2335 93 3 0 chr9 6497454 6497756 -135773688 - AluY SINE Alu -8 303 1 2058 105 3 37 chr9 6497986 6498316 -135773128 - AluY SINE Alu 0 320 1 1853 96 146 0 chr9 6498397 6498658 -135772786 + AluSq SINE Alu 1 299 -4 310 257 57 74 chr9 6498815 6498990 -135772454 + HAL1 LINE L1 2326 2497 -10 898 98 81 0 chr9 6499020 6499143 -135772301 + FLAM_C SINE Alu 1 133 0 373 256 171 18 chr9 6499157 6499321 -135772123 - MER5A DNA MER1_type 0 189 1 23 68 0 0 chr9 6499370 6499414 -135772030 + AT_rich Low_complexity Low_complexity 1 44 0 341 284 54 27 chr9 6499466 6499614 -135771830 - L1M4 LINE L1 -2203 3943 3792 867 286 133 29 chr9 6499760 6500137 -135771307 - LTR33 LTR ERVL -7 514 99 1482 208 72 67 chr9 6500191 6500610 -135770834 + LTR40a LTR ERVL 23 443 -76 829 219 16 37 chr9 6500731 6500758 -135770686 - L1P LINE L1 -2652 3494 3468 2061 86 23 36 chr9 6500758 6501061 -135770383 + AluY SINE Alu 1 299 -12 829 219 16 37 chr9 6501061 6501275 -135770169 - L1P LINE L1 -2678 3468 3258 345 202 218 24 chr9 6501276 6501400 -135770044 + LTR50 LTR ERVL 586 733 -62 216 266 16 0 chr9 6501446 6501510 -135769934 + (TCTA)n Simple_repeat Simple_repeat 1 65 0 2273 112 3 0 chr9 6501541 6501845 -135769599 - AluSc SINE Alu -4 305 1 1139 213 46 59 chr9 6502042 6502347 -135769097 - LTR8A LTR ERV1 0 727 427 316 271 81 27 chr9 6503386 6503589 -135767855 + L1ME4a LINE L1 5878 6095 -26 2236 105 10 3 chr9 6503589 6503894 -135767550 - AluSq SINE Alu -6 307 1 316 271 81 27 chr9 6503894 6503911 -135767533 + L1ME4a LINE L1 6095 6110 -11 428 168 193 0 chr9 6504204 6504323 -135767121 + MIR SINE MIR 121 262 0 2149 55 0 8 chr9 6505947 6506235 -135765209 + AluY SINE Alu 27 312 0 7241 215 35 11 chr9 6506246 6506672 -135764772 + L1 LINE L1 3511 3925 -2221 2236 139 39 28 chr9 6506672 6507032 -135764412 - THE1B LTR MaLR 0 364 1 7241 215 35 11 chr9 6507032 6508242 -135763202 + L1 LINE L1 3925 5187 -959 4724 128 44 33 chr9 6508243 6509056 -135762388 + L1PA16 LINE L1 5340 6161 -5 400 163 12 5 chr9 6509416 6509673 -135761771 + AluJb SINE Alu 17 307 -5 795 209 12 31 chr9 6509772 6509957 -135761487 - AluJo SINE Alu 0 312 127 926 223 9 38 chr9 6509991 6510202 -135761242 - MER3 DNA MER1_type 0 209 5 622 241 28 47 chr9 6510203 6510415 -135761029 + L1MC5 LINE L1 7706 7913 -48 2296 166 21 23 chr9 6510568 6511013 -135760431 - MSTB1 LTR MaLR 0 397 1 385 286 0 0 chr9 6511096 6511194 -135760250 - L1MC4a LINE L1 -1965 5843 5746 679 325 94 22 chr9 6511253 6511656 -135759788 - L2 LINE L2 -702 2612 2181 221 125 0 42 chr9 6512478 6512526 -135758918 + (TTTTTA)n Simple_repeat Simple_repeat 1 46 0 360 344 51 28 chr9 6512883 6513098 -135758346 - MLT1J LTR MaLR -291 220 1 534 306 124 6 chr9 6513100 6513414 -135758030 + HAL1 LINE L1 1726 2076 -431 3774 106 10 8 chr9 6513419 6513931 -135757513 - LTR10D LTR ERV1 0 513 1 37184 187 12 21 chr9 6513947 6520635 -135750809 - HERVI LTR ERV1 -16 7769 1144 1630 264 56 55 chr9 6520965 6522037 -135749407 - HERVI LTR ERV1 -6614 1171 23 3742 110 12 2 chr9 6522063 6522571 -135748873 - LTR10D LTR ERV1 0 513 1 220 313 163 0 chr9 6522848 6522995 -135748449 - L2 LINE L2 -1226 2088 1918 235 248 86 68 chr9 6523333 6523386 -135748058 - MER103 DNA DNA -37 129 78 2224 118 0 0 chr9 6523386 6523690 -135747754 - AluSx SINE Alu -8 304 1 235 248 86 68 chr9 6523690 6523753 -135747691 - MER103 DNA DNA -88 78 11 2283 103 3 0 chr9 6524370 6524672 -135746772 - AluY SINE Alu -8 303 1 1948 108 7 51 chr9 6524902 6525234 -135746210 - AluSg SINE Alu 0 319 1 430 186 150 35 chr9 6525529 6525642 -135745802 + FLAM_C SINE Alu 1 126 -7 1317 177 45 78 chr9 6526523 6526599 -135744845 - LTR37A LTR ERV1 0 426 349 1739 167 38 0 chr9 6526599 6526887 -135744557 - AluJo SINE Alu -13 299 1 1317 177 45 78 chr9 6526887 6527233 -135744211 - LTR37A LTR ERV1 -77 349 18 4104 126 76 35 chr9 6527484 6528233 -135743211 - LTR1 LTR ERV1 0 785 6 2121 131 0 0 chr9 6529038 6529344 -135742100 + AluSq SINE Alu 1 306 0 258 269 106 14 chr9 6529351 6529492 -135741952 - L1ME4a LINE L1 -1 6120 5967 1080 201 44 97 chr9 6529583 6529996 -135741448 + L1M4 LINE L1 4924 5314 -832 331 183 73 12 chr9 6530222 6530304 -135741140 - MLT1H LTR MaLR 0 549 463 1169 191 9 23 chr9 6530604 6530824 -135740620 + MER20 DNA MER1_type 3 219 0 308 253 48 0 chr9 6530831 6530914 -135740530 - MLT1H LTR MaLR -462 87 1 1971 138 13 7 chr9 6531416 6531720 -135739724 + AluJb SINE Alu 1 306 -6 1040 165 41 28 chr9 6531817 6532035 -135739409 + AluJo SINE Alu 87 307 -5 534 241 13 57 chr9 6532386 6532544 -135738900 - LTR67 LTR ERVL -14 543 393 437 295 36 36 chr9 6532687 6532853 -135738591 - LTR67 LTR ERVL -369 188 23 1347 265 23 8 chr9 6533500 6533851 -135737593 + LTR16A LTR ERVL 89 444 -6 502 319 101 4 chr9 6533866 6534123 -135737321 - MLT1J LTR MaLR -2 509 228 1051 140 22 22 chr9 6534381 6534559 -135736885 - LTR8A LTR ERV1 -317 410 233 925 174 11 17 chr9 6534560 6534738 -135736706 + LTR28 LTR ERV1 2 178 -842 261 132 0 0 chr9 6534715 6534753 -135736691 + MER61B LTR ERV1 102 139 -286 * 1173 167 13 107 chr9 6534835 6535134 -135736310 + LTR27 LTR ERV1 364 634 -2 972 179 19 61 chr9 6535139 6535351 -135736093 - LTR8A LTR ERV1 -491 236 34 1665 40 0 5 chr9 6536478 6536678 -135734766 + MLT2A1 LTR ERVL 2 200 -244 41354 75 10 5 chr9 6536679 6542417 -135729027 + HERVL-A1 LTR ERVL 33 5756 -8 3475 76 32 5 chr9 6542418 6542809 -135728635 + MLT2A1 LTR ERVL 1 407 -37 225 0 0 0 chr9 6542809 6542834 -135728610 + (TA)n Simple_repeat Simple_repeat 1 25 0 3475 76 32 5 chr9 6542834 6542874 -135728570 + MLT2A1 LTR ERVL 407 444 0 27 0 0 0 chr9 6542990 6543017 -135728427 + AT_rich Low_complexity Low_complexity 1 27 0 432 271 160 27 chr9 6543049 6543237 -135728207 + MIR SINE MIR 48 260 -2 1158 218 40 0 chr9 6543488 6543713 -135727731 + L1PB4 LINE L1 5921 6154 -2 1187 197 165 76 chr9 6543998 6544093 -135727351 - LTR50 LTR ERVL -8 787 702 192 40 0 0 chr9 6544093 6544118 -135727326 + (CAAA)n Simple_repeat Simple_repeat 3 27 0 1187 197 165 76 chr9 6544118 6544653 -135726791 - LTR50 LTR ERVL -93 702 11 24 53 0 0 chr9 6545092 6545130 -135726314 + AT_rich Low_complexity Low_complexity 1 38 0 2403 90 0 6 chr9 6545131 6545442 -135726002 - AluY SINE Alu -2 309 1 1492 163 63 11 chr9 6545444 6545714 -135725730 - AluJo SINE Alu -26 286 3 581 309 82 0 chr9 6545768 6545988 -135725456 - MIR SINE MIR -2 260 23 422 114 0 29 chr9 6547292 6547362 -135724082 + L1PB4 LINE L1 6087 6154 -2 210 167 0 0 chr9 6548293 6548329 -135723115 - MER91B DNA MER1_type -142 48 13 424 149 7 41 chr9 6548487 6548623 -135722821 + MER53 DNA DNA 3 189 0 1905 190 36 8 chr9 6549209 6549655 -135721789 + MER89 LTR ERV1 1 559 0 431 367 25 17 chr9 6550014 6550251 -135721193 + MIR SINE MIR 24 262 0 7985 166 135 15 chr9 6551282 6552849 -135718595 + MER52A LTR ERV1 1 1755 0 2181 84 28 0 chr9 6553021 6553306 -135718138 - L1PB1 LINE L1 -1 6150 5858 2169 100 4 4 chr9 6553310 6553614 -135717830 + AluSq SINE Alu 5 308 0 239 167 0 0 chr9 6553715 6553751 -135717693 - L1PB1 LINE L1 -297 5854 5819 2470 84 0 3 chr9 6553751 6554061 -135717383 - AluY SINE Alu -2 309 1 2331 131 8 11 chr9 6554087 6554446 -135716998 - THE1B LTR MaLR -1 363 6 1807 256 43 4 chr9 6554470 6554963 -135716481 - L1M4 LINE L1 -1018 5128 4617 2155 123 0 0 chr9 6554974 6555266 -135716178 - AluSg SINE Alu -18 292 1 344 296 20 29 chr9 6555646 6555802 -135715642 - MIR SINE MIR -36 172 21 1939 132 40 0 chr9 6556806 6557102 -135714342 + AluSx SINE Alu 5 312 0 1376 171 38 3 chr9 6557285 6557577 -135713867 - L1MB7 LINE L1 0 6184 5883 233 195 12 24 chr9 6557882 6557964 -135713480 + (TAA)n Simple_repeat Simple_repeat 1 81 0 285 267 23 0 chr9 6558580 6558666 -135712778 - MER69 DNA AcHobo -1727 799 712 27 0 0 0 chr9 6560077 6560104 -135711340 + AT_rich Low_complexity Low_complexity 1 27 0 563 196 34 121 chr9 6560114 6560316 -135711128 + L1MC5 LINE L1 7452 7601 -360 1831 154 21 7 chr9 6560316 6560602 -135710842 + AluJo SINE Alu 1 290 -22 563 196 34 121 chr9 6560602 6560813 -135710631 + L1MC5 LINE L1 7601 7829 -132 195 42 0 0 chr9 6562705 6562729 -135708715 + (TTCA)n Simple_repeat Simple_repeat 4 27 0 3915 155 39 33 chr9 6562738 6563144 -135708300 + L1MB4 LINE L1 5174 5576 -604 2222 100 0 3 chr9 6563144 6563435 -135708009 + AluSc SINE Alu 1 290 -19 3915 155 39 33 chr9 6563435 6563762 -135707682 + L1MB4 LINE L1 5576 5926 -254 2427 173 7 9 chr9 6563762 6564189 -135707255 - MSTB LTR MaLR 0 426 1 3915 155 39 33 chr9 6564189 6564373 -135707071 + L1MB4 LINE L1 5926 6107 -73 512 325 75 9 chr9 6564450 6564662 -135706782 - MIR SINE MIR -31 231 6 25 0 0 0 chr9 6565082 6565107 -135706337 + AT_rich Low_complexity Low_complexity 1 25 0 225 69 0 0 chr9 6565964 6565993 -135705451 + U2 snRNA snRNA 1 29 -159 1018 252 35 22 chr9 6566021 6566422 -135705022 + L1MC5 LINE L1 6968 7373 -588 369 284 29 54 chr9 6566474 6566678 -135704766 + L1ME3A LINE L1 5963 6161 -9 2502 174 72 30 chr9 6567012 6567024 -135704420 + L1MB5 LINE L1 5566 5576 -598 1679 118 4 12 chr9 6567024 6567269 -135704175 + AluSx SINE Alu 38 280 -32 297 0 0 0 chr9 6567270 6567303 -135704141 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 2502 174 72 30 chr9 6567303 6567856 -135703588 + L1MB5 LINE L1 5575 6157 -17 4628 170 6 20 chr9 6567876 6568850 -135702594 + L1P LINE L1 3037 3996 -2150 604 284 83 31 chr9 6569179 6569408 -135702036 - MIR SINE MIR -21 241 1 198 247 62 49 chr9 6569408 6569441 -135702003 - MER5A DNA MER1_type -148 41 8 600 226 104 28 chr9 6570135 6570347 -135701097 + MLT1H LTR MaLR 3 230 -319 323 163 24 122 chr9 6570429 6570552 -135700892 + MLT1H LTR MaLR 426 536 -13 187 369 131 8 chr9 6570963 6571085 -135700359 + L2 LINE L2 3136 3272 0 249 33 0 0 chr9 6571608 6571638 -135699806 + (TG)n Simple_repeat Simple_repeat 1 30 0 1742 149 3 11 chr9 6571649 6571931 -135699513 - AluJb SINE Alu -32 280 1 197 345 9 52 chr9 6572958 6573074 -135698370 + L3 LINE CR1 1458 1568 -9 40151 36 26 2 chr9 6573232 6579235 -135692209 + L1PA2 LINE L1 4 6155 0 669 239 25 50 chr9 6579501 6579702 -135691742 - MIR SINE MIR -2 260 65 203 152 0 0 chr9 6580927 6580960 -135690484 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 1986 130 52 30 chr9 6581061 6581391 -135690053 - MER1B DNA MER1_type 0 337 1 269 100 0 0 chr9 6581466 6581506 -135689938 - MLT1I LTR MaLR -272 137 98 317 225 130 0 chr9 6581515 6581653 -135689791 + L1MEc LINE L1 1599 1754 -4642 25 0 0 0 chr9 6581780 6581805 -135689639 + AT_rich Low_complexity Low_complexity 1 25 0 306 197 29 117 chr9 6581871 6582008 -135689436 + L1M4 LINE L1 4562 4686 -1460 22 70 0 0 chr9 6582233 6582276 -135689168 + AT_rich Low_complexity Low_complexity 1 43 0 439 183 83 33 chr9 6582314 6582434 -135689010 - L1MC5 LINE L1 -48 7913 7788 8465 152 29 4 chr9 6582434 6583896 -135687548 - ERVL-B1 LTR ERVL -2210 3554 2057 2953 170 68 47 chr9 6583923 6584946 -135686498 - MER21A LTR ERV1 -19 912 26 9970 187 43 18 chr9 6584992 6585746 -135685698 - ERVL-B1 LTR ERVL -3711 2053 1320 1191 210 78 49 chr9 6585746 6586131 -135685313 + MSTD LTR MaLR 1 396 0 9970 187 43 18 chr9 6586131 6586760 -135684684 - ERVL-B1 LTR ERVL -4444 1320 709 2459 131 31 5 chr9 6586760 6587148 -135684296 + MER48 LTR ERV1 1 398 0 9970 187 43 18 chr9 6587148 6587764 -135683680 - ERVL-B1 LTR ERVL -5055 709 2 1699 181 151 54 chr9 6587771 6588235 -135683209 - MLT2B1 LTR ERVL -6 514 6 986 103 19 0 chr9 6588235 6588391 -135683053 + L1MB8 LINE L1 5737 5895 -283 320 305 59 0 chr9 6588623 6588741 -135682703 + L2 LINE L2 1879 2003 -1311 225 344 84 7 chr9 6588774 6588928 -135682516 - MLT1L LTR MaLR -67 548 383 10762 190 30 36 chr9 6588987 6590639 -135680805 + L1MB3 LINE L1 266 1926 -4456 2758 112 57 69 chr9 6590639 6591164 -135680280 - LTR44 LTR ERV1 0 519 1 2154 138 0 0 chr9 6591171 6591482 -135679962 - AluSx SINE Alu -1 311 1 10762 190 30 36 chr9 6591482 6592107 -135679337 + L1MB3 LINE L1 1932 2559 -3823 1935 149 7 3 chr9 6592107 6592396 -135679048 - AluJb SINE Alu -20 292 3 10762 190 30 36 chr9 6592396 6593118 -135678326 + L1MB3 LINE L1 2559 3284 -3098 2023 165 7 0 chr9 6593118 6593427 -135678017 + AluJb SINE Alu 1 311 -1 10762 190 30 36 chr9 6593427 6595611 -135675833 + L1MB3 LINE L1 3284 5424 -958 1746 170 0 33 chr9 6595740 6595897 -135675547 - AluJo SINE Alu -22 290 146 243 0 0 0 chr9 6595897 6595924 -135675520 + (TTCC)n Simple_repeat Simple_repeat 3 29 0 1746 170 0 33 chr9 6595924 6596066 -135675378 - AluJo SINE Alu -166 146 1 4250 165 27 40 chr9 6596535 6597497 -135673947 + L1MB3 LINE L1 5424 6374 -45 2293 98 0 10 chr9 6597497 6597802 -135673642 + AluSx SINE Alu 1 302 -10 4250 165 27 40 chr9 6597802 6597846 -135673598 + L1MB3 LINE L1 6374 6417 -2 553 264 41 86 chr9 6598018 6598598 -135672846 - L1MEd LINE L1 -4871 1248 695 180 152 0 0 chr9 6598681 6598714 -135672730 + (TCTCTG)n Simple_repeat Simple_repeat 2 34 0 385 336 69 83 chr9 6599127 6599622 -135671822 + L2 LINE L2 2589 3073 -199 2212 123 3 7 chr9 6599622 6599931 -135671513 - AluSx SINE Alu -4 308 1 385 336 69 83 chr9 6599931 6600129 -135671315 + L2 LINE L2 3073 3272 0 207 200 0 0 chr9 6600545 6600580 -135670864 + (TG)n Simple_repeat Simple_repeat 2 36 0 281 211 0 0 chr9 6600792 6600863 -135670581 - L1ME LINE L1 -303 5818 5748 831 240 159 0 chr9 6600867 6601075 -135670369 - MIR SINE MIR -21 241 1 636 280 13 0 chr9 6601166 6601316 -135670128 + MIR SINE MIR 15 166 -96 315 49 0 0 chr9 6601433 6601474 -135669970 + (A)n Simple_repeat Simple_repeat 1 41 0 253 234 106 0 chr9 6601905 6601999 -135669445 - MIR SINE MIR 0 262 159 216 0 0 0 chr9 6602038 6602062 -135669382 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 347 198 242 0 chr9 6602064 6602155 -135669289 - FLAM_A SINE Alu -17 116 4 243 273 26 39 chr9 6602155 6602232 -135669212 - MIR SINE MIR -145 117 42 211 262 0 0 chr9 6602298 6602340 -135669104 - MIR3 SINE MIR -17 191 150 309 213 12 12 chr9 6602736 6602816 -135668628 - MER116 DNA Mariner 0 80 1 1153 160 0 55 chr9 6604439 6604482 -135666962 + AluJo SINE Alu 91 135 -177 2556 43 0 3 chr9 6604482 6604782 -135666662 + AluY SINE Alu 1 299 -12 1153 160 0 55 chr9 6604782 6604957 -135666487 + AluJo SINE Alu 135 297 -15 654 242 0 0 chr9 6605159 6605287 -135666157 + FLAM_A SINE Alu 3 130 -3 405 307 130 31 chr9 6606638 6606957 -135664487 + HAL1b LINE L1 123 379 -969 350 213 36 169 chr9 6606967 6607192 -135664252 - MLT1L LTR MaLR 0 615 421 301 308 119 6 chr9 6607327 6607486 -135663958 + MLT1J LTR MaLR 2 178 -333 985 200 60 113 chr9 6607495 6607865 -135663579 + MLT2D LTR ERVL 1 350 -64 211 177 32 0 chr9 6607881 6607943 -135663501 + (TA)n Simple_repeat Simple_repeat 2 65 0 278 206 151 0 chr9 6608062 6608135 -135663309 + MLT1L LTR MaLR 311 394 -221 509 305 86 12 chr9 6608315 6608571 -135662873 - MLT1L LTR MaLR -340 275 1 2481 125 24 5 chr9 6609088 6609505 -135661939 - LTR24C LTR ERV1 -210 425 1 726 364 21 9 chr9 6609703 6610137 -135661307 + L1M3a LINE L1 14 452 -5503 15989 32 1 1 chr9 6610961 6613009 -135658435 + L1P LINE L1 1547 3595 -2551 957 166 67 46 chr9 6613901 6613970 -135657474 + L1MA8 LINE L1 6002 6068 -223 2514 66 3 0 chr9 6613970 6614272 -135657172 + AluY SINE Alu 1 303 -8 957 166 67 46 chr9 6614272 6614428 -135657016 + L1MA8 LINE L1 6068 6237 -54 267 31 0 0 chr9 6614428 6614460 -135656984 + (TA)n Simple_repeat Simple_repeat 1 32 0 957 166 67 46 chr9 6614460 6614517 -135656927 + L1MA8 LINE L1 6237 6291 0 465 356 56 0 chr9 6614901 6615081 -135656363 + L2 LINE L2 2811 3000 -313 1757 48 5 0 chr9 6615095 6615301 -135656143 - AluY SINE Alu -13 298 92 336 322 59 8 chr9 6615423 6615541 -135655903 + MIR3 SINE MIR 10 133 -75 2293 105 7 0 chr9 6615901 6616207 -135655237 + AluSp SINE Alu 1 308 -5 366 183 0 0 chr9 6616394 6616465 -135654979 + (CA)n Simple_repeat Simple_repeat 2 72 0 194 259 65 111 chr9 6616541 6616649 -135654795 + MER5A DNA MER1_type 65 167 -22 283 222 43 103 chr9 6616736 6616853 -135654591 + MIR SINE MIR 71 180 -82 304 204 46 125 chr9 6617063 6617215 -135654229 - MER112 DNA MER1_type -1 259 120 2533 168 95 6 chr9 6617239 6617744 -135653700 - MER44D DNA MER2_type 0 605 1 463 138 38 0 chr9 6617972 6618052 -135653392 + MER44D DNA MER2_type 575 657 -48 386 365 28 38 chr9 6618523 6618776 -135652668 - MIR SINE MIR -2 260 8 314 281 94 23 chr9 6619902 6620030 -135651414 - MIR SINE MIR -20 242 106 211 267 0 40 chr9 6620242 6620317 -135651127 - L2 LINE L2 -6 3307 3236 * 334 233 165 0 chr9 6620313 6620416 -135651028 + MIR SINE MIR 13 132 -130 1091 90 0 0 chr9 6620526 6620660 -135650784 - AluSq/x SINE Alu -179 134 1 22 0 0 0 chr9 6620783 6620805 -135650639 + AT_rich Low_complexity Low_complexity 1 22 0 28 48 0 0 chr9 6622175 6622217 -135649227 + AT_rich Low_complexity Low_complexity 1 42 0 497 321 65 11 chr9 6622275 6622459 -135648985 + MIR SINE MIR 1 194 -68 1550 145 4 4 chr9 6623053 6623281 -135648163 - AluSx SINE Alu -84 228 1 1584 137 8 16 chr9 6623429 6623684 -135647760 + AluSc SINE Alu 1 253 -56 189 257 119 79 chr9 6625798 6625899 -135645545 - MIR SINE MIR -147 115 11 480 247 100 32 chr9 6626105 6626315 -135645129 - MIR SINE MIR 0 262 38 4085 241 75 21 chr9 6626458 6628083 -135643361 + L1M3f LINE L1 539 2242 -4086 2250 128 88 7 chr9 6628083 6628491 -135642953 + L1MA4 LINE L1 5849 6289 -11 477 255 101 64 chr9 6628649 6628933 -135642511 + L1M3f LINE L1 3255 3527 -2801 1793 167 10 10 chr9 6628933 6629233 -135642211 + AluJo SINE Alu 1 300 -12 236 77 26 0 chr9 6629233 6629272 -135642172 + (TA)n Simple_repeat Simple_repeat 2 41 0 477 255 101 64 chr9 6629272 6629398 -135642046 + L1M3f LINE L1 3526 3672 -2656 800 177 6 55 chr9 6629412 6629593 -135641851 + MLT1D LTR MaLR 17 188 -317 2528 165 19 39 chr9 6629593 6630108 -135641336 + MLT1D LTR MaLR 1 505 0 40618 35 23 1 chr9 6630136 6636156 -135635288 - L1PA3 LINE L1 0 6155 3 475 275 105 18 chr9 6636261 6636595 -135634849 + L1M3f LINE L1 3802 4164 -2164 592 337 102 38 chr9 6636642 6637177 -135634267 - L2 LINE L2 -2 3270 2703 365 242 25 25 chr9 6637435 6637555 -135633889 + LTR33 LTR ERVL 402 521 0 518 276 19 26 chr9 6637565 6637721 -135633723 - L2 LINE L2 -596 2718 2564 1504 173 15 11 chr9 6637729 6638130 -135633314 + MER76 LTR ERV 1 466 -222 358 164 45 0 chr9 6638174 6638241 -135633203 + MER76 LTR ERV 590 659 -29 638 312 41 54 chr9 6638242 6638684 -135632760 - L2 LINE L2 -744 2570 2135 180 250 0 0 chr9 6638817 6638853 -135632591 + L2 LINE L2 3220 3255 -17 322 119 237 0 chr9 6639223 6639282 -135632162 - THE1B LTR MaLR 0 375 303 1027 146 0 0 chr9 6639284 6639465 -135631979 + AluSg/x SINE Alu 134 314 0 219 167 0 0 chr9 6639485 6639527 -135631917 + GA-rich Low_complexity Low_complexity 4 45 0 2098 116 0 0 chr9 6639540 6639842 -135631602 - THE1B LTR MaLR -62 302 1 286 323 222 35 chr9 6640049 6640247 -135631197 + MIR SINE MIR 20 254 -8 1321 174 0 21 chr9 6641037 6641273 -135630171 + AluJo SINE Alu 70 300 -12 202 267 0 0 chr9 6641628 6641673 -135629771 + (CAG)n Simple_repeat Simple_repeat 3 47 0 628 213 90 62 chr9 6641894 6642105 -135629339 + MIR SINE MIR 40 256 -6 1591 151 7 60 chr9 6642493 6642813 -135628631 - AluJb SINE Alu 0 304 1 264 353 88 0 chr9 6643054 6643190 -135628254 - MIR3 SINE MIR -5 203 56 235 286 0 16 chr9 6643528 6643591 -135627853 - MIR SINE MIR -127 81 20 1688 148 20 67 chr9 6644029 6644435 -135627009 - L1MB8 LINE L1 -6 6172 5786 1456 173 24 0 chr9 6644438 6644733 -135626711 - L1MB8 LINE L1 -538 5646 5345 1186 277 54 12 chr9 6644740 6645242 -135626202 - L1M4c LINE L1 -4738 1646 1124 1625 256 113 35 chr9 6645246 6645780 -135625664 + L1ME LINE L1 89 580 -5500 2064 144 3 0 chr9 6645780 6646071 -135625373 + AluSx SINE Alu 1 292 -20 1625 256 113 35 chr9 6646071 6646717 -135624727 + L1ME LINE L1 580 1362 -4718 2833 6 15 3 chr9 6646740 6647068 -135624376 + L1PA3 LINE L1 5824 6155 0 183 42 0 0 chr9 6647136 6647160 -135624284 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 334 215 47 0 chr9 6647168 6647275 -135624169 + L1ME LINE L1 1403 1514 -4566 2495 191 57 78 chr9 6647887 6648593 -135622851 - LTR8 LTR ERV1 0 691 1 1939 135 49 0 chr9 6649786 6650074 -135621370 + AluSx SINE Alu 5 306 -6 283 282 18 0 chr9 6650575 6650685 -135620759 + LTR33 LTR ERVL 4 115 -406 573 238 42 0 chr9 6651098 6651241 -135620203 + MLT1D LTR MaLR 355 503 -2 1629 115 125 16 chr9 6652288 6652593 -135618851 - MER44D DNA MER2_type -1 608 1 3676 162 19 0 chr9 6653775 6654423 -135617021 + L1MB5 LINE L1 5515 6174 0 4356 213 36 30 chr9 6654455 6654843 -135616601 - L1M4 LINE L1 -649 6023 5639 1578 194 40 0 chr9 6654843 6655121 -135616323 + AluJb SINE Alu 9 297 -15 4356 213 36 30 chr9 6655121 6656100 -135615344 - L1M4 LINE L1 -1033 5639 4648 207 0 0 0 chr9 6656100 6656123 -135615321 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 4356 213 36 30 chr9 6656123 6656190 -135615254 - L1M4 LINE L1 -2024 4648 4583 25554 87 7 6 chr9 6656194 6661618 -135609826 + L1PA7 LINE L1 1377 7588 -4 203 0 37 0 chr9 6661644 6661671 -135609773 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1346 245 6 14 chr9 6661679 6662026 -135609418 - L1M4 LINE L1 -2046 4598 4255 4432 235 54 43 chr9 6662029 6664025 -135607419 - L1M4 LINE L1 -4656 1990 5 476 343 78 12 chr9 6664050 6664371 -135607073 - L1MEc LINE L1 -3404 2725 2384 1529 188 18 25 chr9 6664382 6664700 -135606744 - AluJo SINE Alu 0 319 4 3041 93 32 5 chr9 6664701 6665133 -135606311 - MLT2A1 LTR ERVL 0 444 1 550 322 70 36 chr9 6665142 6665642 -135605802 - L1MEc LINE L1 -4016 2294 1778 234 0 0 0 chr9 6666544 6666570 -135604874 + (A)n Simple_repeat Simple_repeat 1 26 0 2332 64 0 3 chr9 6666701 6667010 -135604434 + AluY SINE Alu 1 308 0 612 242 80 58 chr9 6667041 6667379 -135604065 + L1MEc LINE L1 2179 2492 -3723 1199 165 5 15 chr9 6669049 6669276 -135602168 - AluJo SINE Alu 0 309 85 1967 127 0 43 chr9 6669388 6669687 -135601757 + AluSq SINE Alu 7 292 -21 3261 136 71 43 chr9 6669814 6670492 -135600952 - LTR8A LTR ERV1 -30 697 1 521 184 31 17 chr9 6671513 6671873 -135599571 + (TA)n Simple_repeat Simple_repeat 1 365 0 421 301 35 60 chr9 6672438 6672637 -135598807 + MIR SINE MIR 2 195 -67 355 240 123 68 chr9 6672706 6672852 -135598592 - MIR SINE MIR -75 187 34 228 67 0 0 chr9 6673670 6673700 -135597744 + (TTA)n Simple_repeat Simple_repeat 2 31 0 1762 178 21 0 chr9 6673702 6673983 -135597461 - AluJb SINE Alu -25 287 1 366 284 24 95 chr9 6675835 6676046 -135595398 - L1ME3A LINE L1 -1 6169 5974 595 280 111 18 chr9 6676647 6676979 -135594465 - MLT1L LTR MaLR 0 615 253 526 195 0 70 chr9 6678330 6678458 -135592986 + MIR SINE MIR 33 151 -57 1143 209 0 30 chr9 6678647 6678877 -135592567 - AluJb SINE Alu -9 303 81 1363 294 71 30 chr9 6678878 6678930 -135592514 - L1MEd LINE L1 -4865 1254 1206 1748 168 0 25 chr9 6678930 6679245 -135592199 - AluJo SINE Alu -5 307 1 1363 294 71 30 chr9 6679245 6680202 -135591242 - L1MEd LINE L1 -4913 1206 274 841 242 11 0 chr9 6680905 6681083 -135590361 + MIR SINE MIR 79 258 -4 717 231 81 0 chr9 6681083 6681256 -135590188 + AluJo SINE Alu 120 306 -6 1800 140 39 3 chr9 6681504 6681790 -135589654 + AluJo SINE Alu 1 296 -16 260 245 0 0 chr9 6682107 6682160 -135589284 - MIR SINE MIR -59 149 97 399 339 133 33 chr9 6682634 6683032 -135588412 - L2 LINE L2 -16 3256 2819 292 311 152 7 chr9 6683790 6683941 -135587503 + MIR SINE MIR 36 208 -54 431 358 33 30 chr9 6683975 6684307 -135587137 + L2 LINE L2 2559 2891 -423 4747 222 93 18 chr9 6684443 6685526 -135585918 - L1M4 LINE L1 -1825 4321 3321 231 88 0 0 chr9 6685526 6685560 -135585884 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 4747 222 93 18 chr9 6685560 6685910 -135585534 - L1M4 LINE L1 -2825 3321 2999 1822 166 0 10 chr9 6685910 6686212 -135585232 - AluSx SINE Alu -13 299 1 4747 222 93 18 chr9 6686212 6686446 -135584998 - L1M4 LINE L1 -3147 2999 2528 1779 161 3 17 chr9 6686685 6686983 -135584461 + AluJb SINE Alu 1 294 -18 457 299 128 9 chr9 6687624 6687835 -135583609 - MIR SINE MIR -7 255 20 222 317 70 75 chr9 6688374 6688560 -135582884 - L2 LINE L2 -995 2319 2135 616 199 93 7 chr9 6688664 6688815 -135582629 - LTR53 LTR ERVL -61 458 295 453 159 0 0 chr9 6689162 6689231 -135582213 - AluJ/FLAM SINE Alu -243 69 1 1182 267 63 13 chr9 6689248 6689791 -135581653 - L1M4 LINE L1 -2400 3746 3177 35 0 0 0 chr9 6689795 6689830 -135581614 + AT_rich Low_complexity Low_complexity 1 35 0 1742 187 52 3 chr9 6689938 6690286 -135581158 + MLT1A1 LTR MaLR 1 365 0 230 121 0 0 chr9 6690527 6690560 -135580884 - L2 LINE L2 -16 3256 3224 309 214 87 19 chr9 6690636 6690739 -135580705 - MLT1J LTR MaLR -33 478 369 334 265 120 56 chr9 6690752 6690850 -135580594 - LTR16A1 LTR ERVL 0 457 367 195 100 0 0 chr9 6690850 6690880 -135580564 + (CAGGG)n Simple_repeat Simple_repeat 1 30 0 334 265 120 56 chr9 6690880 6691015 -135580429 - LTR16A1 LTR ERVL -90 367 209 2105 123 3 7 chr9 6691290 6691583 -135579861 - AluSx SINE Alu -16 296 5 330 234 34 88 chr9 6691626 6691858 -135579586 - MLT1J LTR MaLR -200 311 54 247 275 87 81 chr9 6691953 6692102 -135579342 - MIR SINE MIR -58 150 1 364 99 0 0 chr9 6692137 6692199 -135579245 - MLT2B3 LTR ERVL 0 520 403 234 81 0 0 chr9 6692199 6692236 -135579208 + (TA)n Simple_repeat Simple_repeat 2 38 0 227 104 0 0 chr9 6692243 6692291 -135579153 - LTR66 LTR ERVL -169 441 394 2019 199 17 60 chr9 6692296 6692310 -135579134 - MLT2B3 LTR ERVL -44 500 487 459 0 0 0 chr9 6692310 6692361 -135579083 + (TCTA)n Simple_repeat Simple_repeat 2 52 0 2019 199 17 60 chr9 6692361 6692780 -135578664 - MLT2B3 LTR ERVL -57 487 115 1939 154 3 3 chr9 6692780 6693085 -135578359 + AluJb SINE Alu 1 305 -7 2019 199 17 60 chr9 6693085 6693196 -135578248 - MLT2B3 LTR ERVL -429 115 1 1983 138 0 7 chr9 6693551 6693840 -135577604 + AluSg SINE Alu 1 287 -23 1337 87 0 0 chr9 6694092 6694276 -135577168 - L1PA14 LINE L1 0 6161 5978 1725 84 0 24 chr9 6694296 6694547 -135576897 - L1PA14 LINE L1 -291 5870 5626 204 295 103 13 chr9 6695150 6695228 -135576216 - L2 LINE L2 -21 3251 3167 38914 69 4 3 chr9 6695351 6697185 -135574259 + L1PA5 LINE L1 11 1841 -4313 2285 52 41 3 chr9 6697185 6697475 -135573969 - AluY SINE Alu -10 301 1 38914 69 4 3 chr9 6697475 6701774 -135569670 + L1PA5 LINE L1 1841 6152 -2 234 304 29 10 chr9 6704078 6704180 -135567264 + MIR SINE MIR 28 131 -131 425 222 22 0 chr9 6704217 6704307 -135567137 + MLT1H LTR MaLR 458 549 0 322 289 10 10 chr9 6704311 6704415 -135567029 + MIR SINE MIR 159 262 0 533 177 218 7 chr9 6704896 6705043 -135566401 - MER5A DNA MER1_type 0 189 12 637 246 191 24 chr9 6705677 6706018 -135565426 + MLT1J LTR MaLR 107 504 -7 25 0 0 0 chr9 6706441 6706466 -135564978 + AT_rich Low_complexity Low_complexity 1 25 0 331 266 24 32 chr9 6706590 6706714 -135564730 - MER117 DNA MER1_type -69 128 6 1952 154 23 0 chr9 6707741 6708047 -135563397 - AluSq SINE Alu 0 313 1 22 0 0 0 chr9 6708170 6708192 -135563252 + AT_rich Low_complexity Low_complexity 1 22 0 233 237 21 10 chr9 6708949 6709046 -135562398 - L1ME LINE L1 -193 5928 5831 850 213 66 92 chr9 6709422 6709769 -135561675 - MER46C DNA MER2_type 0 338 1 646 258 30 39 chr9 6709907 6710117 -135561327 - MIR SINE MIR -3 259 52 1143 232 77 16 chr9 6710853 6710926 -135560518 - MSTD LTR MaLR 0 396 329 1930 158 6 19 chr9 6710926 6711237 -135560207 + AluJo SINE Alu 1 307 -5 1143 232 77 16 chr9 6711237 6711473 -135559971 - MSTD LTR MaLR -67 329 68 739 62 0 0 chr9 6711473 6711569 -135559875 + AluSc SINE Alu 212 307 -2 432 168 47 0 chr9 6711579 6711668 -135559776 - MSTD LTR MaLR -344 89 1 680 284 48 141 chr9 6712435 6712885 -135558559 + L2 LINE L2 1950 2440 -874 1756 196 17 63 chr9 6712885 6713221 -135558223 - MSTD LTR MaLR -1 395 80 2363 103 0 0 chr9 6713221 6713523 -135557921 - AluSc SINE Alu -7 302 1 1756 196 17 63 chr9 6713523 6713600 -135557844 - MSTD LTR MaLR -316 80 1 680 284 48 141 chr9 6713600 6713712 -135557732 + L2 LINE L2 2440 2561 -753 2473 84 0 3 chr9 6713712 6714023 -135557421 - AluY SINE Alu 0 311 2 680 284 48 141 chr9 6714023 6714382 -135557062 + L2 LINE L2 2561 2786 -528 653 302 21 8 chr9 6714415 6714650 -135556794 - Charlie8 DNA MER1_type -2179 238 1 1452 167 105 0 chr9 6715171 6715465 -135555979 + MER44D DNA MER2_type 9 603 -6 2024 121 11 3 chr9 6716150 6716432 -135555012 + AluSx SINE Alu 1 284 -28 180 0 0 0 chr9 6716436 6716456 -135554988 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1982 155 39 62 chr9 6716625 6717010 -135554434 + MSTB1 LTR MaLR 3 378 -54 2813 95 87 27 chr9 6717010 6717494 -135553950 + MER75 DNA T2_type 2 514 0 1982 155 39 62 chr9 6717494 6717546 -135553898 + MSTB1 LTR MaLR 378 430 -2 184 287 58 35 chr9 6717567 6717654 -135553790 + L2 LINE L2 3179 3267 -5 5703 124 32 13 chr9 6718294 6719302 -135552142 + Tigger3b DNA MER2_type 7 1033 -198 1912 149 56 20 chr9 6719306 6719696 -135551748 + MER4E LTR ERV1 371 774 -5 268 288 105 13 chr9 6719722 6719875 -135551569 + L1MC4a LINE L1 6415 6581 -1227 * 402 230 178 0 chr9 6719872 6720007 -135551437 + L1MC4 LINE L1 6769 6927 -1115 1239 262 67 80 chr9 6720055 6720708 -135550736 - LTR19C LTR ERV1 0 779 135 279 214 0 0 chr9 6720764 6720834 -135550610 + L1MC4 LINE L1 7154 7223 -819 418 297 110 7 chr9 6721495 6721640 -135549804 - MIR3 SINE MIR -15 193 34 285 303 19 0 chr9 6722069 6722224 -135549220 - MER103 DNA DNA 0 166 9 2130 120 3 13 chr9 6722911 6723219 -135548225 - AluSx SINE Alu -7 305 1 233 167 17 0 chr9 6723387 6723447 -135547997 - L1ME4a LINE L1 -1 6120 6060 532 290 80 35 chr9 6723463 6723745 -135547699 - L1ME4a LINE L1 -139 5982 5714 447 87 0 0 chr9 6723745 6723814 -135547630 + (TG)n Simple_repeat Simple_repeat 2 70 0 532 290 80 35 chr9 6723814 6724106 -135547338 - L1ME4a LINE L1 -407 5714 5382 1547 198 13 31 chr9 6724461 6724779 -135546665 + AluJo SINE Alu 1 312 0 417 364 18 49 chr9 6724869 6725155 -135546289 - L2 LINE L2 -493 2821 2545 266 259 52 0 chr9 6725237 6725295 -135546149 - MIR SINE MIR -116 92 32 274 354 137 13 chr9 6725424 6725803 -135545641 - L2 LINE L2 -903 2411 1986 666 176 14 131 chr9 6726016 6726237 -135545207 + MIR SINE MIR 68 262 0 1059 94 50 28 chr9 6726640 6726820 -135544624 + L1MB3 LINE L1 5999 6182 -1 612 242 80 58 chr9 6728606 6728944 -135542500 - L1MEc LINE L1 -3723 2423 2110 2405 50 0 0 chr9 6728975 6729283 -135542161 - AluY SINE Alu 0 308 1 679 198 93 0 chr9 6729286 6729448 -135541996 - L1 LINE L1 -1800 4346 4170 3201 88 0 0 chr9 6731327 6731768 -135539676 - L1P LINE L1 -5705 441 1 29 60 0 0 chr9 6731783 6731833 -135539611 + AT_rich Low_complexity Low_complexity 1 50 0 2051 118 0 0 chr9 6731973 6732244 -135539200 + AluSx SINE Alu 24 294 -18 2193 96 0 51 chr9 6732450 6732764 -135538680 + AluSc SINE Alu 1 298 -11 6038 138 16 16 chr9 6733084 6735121 -135536323 - L1MA3 LINE L1 -1 6304 4266 297 73 0 0 chr9 6735122 6735163 -135536281 + HERVL LTR ERVL 1339 1379 -4275 389 301 46 53 chr9 6735238 6735833 -135535611 + L1M4 LINE L1 2402 3000 -3146 1715 209 64 43 chr9 6735833 6736301 -135535143 - MER31A LTR ERV1 -4 481 4 389 301 46 53 chr9 6736301 6736422 -135535022 + L1M4 LINE L1 3000 3120 -3026 2176 127 7 0 chr9 6736422 6736729 -135534715 + AluSx SINE Alu 1 309 -3 389 301 46 53 chr9 6736729 6736972 -135534472 + L1M4 LINE L1 3120 3355 -2791 1275 236 64 12 chr9 6737101 6737520 -135533924 + L1M4 LINE L1 4507 4947 -1199 210 168 0 69 chr9 6737523 6737624 -135533820 + GA-rich Low_complexity Low_complexity 1 94 0 388 252 17 0 chr9 6737624 6737743 -135533701 + L1M4 LINE L1 4943 5063 -1083 211 125 0 71 chr9 6737819 6737875 -135533569 + (GGGA)n Simple_repeat Simple_repeat 2 53 0 413 237 17 0 chr9 6737905 6738023 -135533421 + L1MC2 LINE L1 4943 5062 -1084 1040 168 139 9 chr9 6738555 6738811 -135532633 + L1ME1 LINE L1 5877 6161 -5 2246 146 55 55 chr9 6739098 6739586 -135531858 + L1MC2 LINE L1 5436 5923 -410 1276 158 14 0 chr9 6739586 6739808 -135531636 + Tigger3(Golem) DNA MER2_type 1 225 -2804 1862 87 42 19 chr9 6739821 6740131 -135531313 - Tigger3b DNA MER2_type -572 659 343 30 0 0 0 chr9 6741738 6741768 -135529676 + AT_rich Low_complexity Low_complexity 1 30 0 1002 119 57 23 chr9 6741954 6742131 -135529313 - MER46A DNA MER2_type 0 236 54 212 57 0 29 chr9 6743545 6743580 -135527864 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 1117 147 15 10 chr9 6743657 6743854 -135527590 + L1MC2 LINE L1 6139 6336 -8 449 257 86 29 chr9 6743886 6744026 -135527418 + MIR SINE MIR 40 187 -75 262 279 0 15 chr9 6744055 6744123 -135527321 + MER5A DNA MER1_type 10 76 -113 1764 159 43 7 chr9 6744123 6744424 -135527020 + AluJb SINE Alu 1 312 0 231 36 0 0 chr9 6744838 6744866 -135526578 + (A)n Simple_repeat Simple_repeat 1 28 0 2449 60 0 7 chr9 6744873 6745175 -135526269 + AluY SINE Alu 1 300 -11 6379 130 16 15 chr9 6745495 6747531 -135523913 - L1MA3 LINE L1 -1 6304 4266 297 73 0 0 chr9 6747532 6747573 -135523871 + HERVL LTR ERVL 1339 1379 -4275 565 313 51 47 chr9 6747648 6748243 -135523201 + L1M4 LINE L1 2402 2993 -3153 1715 209 64 43 chr9 6748243 6748711 -135522733 - MER31A LTR ERV1 -4 481 4 565 313 51 47 chr9 6748711 6748832 -135522612 + L1M4 LINE L1 2993 3112 -3034 2176 127 7 0 chr9 6748832 6749139 -135522305 + AluSx SINE Alu 1 309 -3 565 313 51 47 chr9 6749139 6749685 -135521759 + L1M4 LINE L1 3112 3671 -2475 790 334 47 31 chr9 6749722 6750320 -135521124 + L1M4 LINE L1 4018 4640 -1506 2196 108 0 44 chr9 6750320 6750466 -135520978 + AluSx SINE Alu 1 127 -185 2469 82 0 22 chr9 6750466 6750781 -135520663 + AluY SINE Alu 1 308 -3 2196 108 0 44 chr9 6750781 6750949 -135520495 + AluSx SINE Alu 127 301 -11 790 334 47 31 chr9 6750949 6751354 -135520090 + L1M4 LINE L1 4640 5037 -1109 * 1364 124 10 74 chr9 6751343 6751575 -135519869 + L1MC1 LINE L1 5657 5754 -579 2330 112 0 6 chr9 6751575 6751888 -135519556 + AluSx SINE Alu 1 311 -1 1364 124 10 74 chr9 6751888 6752020 -135519424 + L1MC1 LINE L1 5754 5893 -440 378 0 0 0 chr9 6752043 6752085 -135519359 + (CA)n Simple_repeat Simple_repeat 2 43 0 360 327 19 0 chr9 6752198 6752302 -135519142 + L2 LINE L2 3162 3267 -5 252 0 0 0 chr9 6752737 6752765 -135518679 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 2133 135 26 0 chr9 6754526 6754830 -135516614 + AluSx SINE Alu 1 312 0 1554 214 38 17 chr9 6755122 6755623 -135515821 - MER21B LTR ERV1 -107 756 206 1137 157 20 0 chr9 6755704 6755901 -135515543 - L1PB3 LINE L1 -1 6153 5953 2158 94 0 60 chr9 6755910 6756228 -135515216 - AluSc SINE Alu -10 299 1 237 259 0 0 chr9 6756228 6756282 -135515162 - MER21B LTR ERV1 -770 93 40 2051 118 0 0 chr9 6756434 6756705 -135514739 - AluSx SINE Alu -18 294 24 29 60 0 0 chr9 6756845 6756895 -135514549 + AT_rich Low_complexity Low_complexity 1 50 0 27322 42 1 3 chr9 6756910 6763076 -135508368 + L1PA4 LINE L1 1 6152 -3 1053 277 95 25 chr9 6764045 6764773 -135506671 - L1ME LINE L1 -403 5759 4922 2194 109 0 0 chr9 6764773 6765057 -135506387 + AluSx SINE Alu 5 288 -24 1053 277 95 25 chr9 6765057 6765427 -135506017 - L1ME LINE L1 -1240 4922 4579 265 353 15 45 chr9 6765487 6765620 -135505824 - L2 LINE L2 0 3272 3144 2087 175 35 22 chr9 6765750 6766156 -135505288 - MLT2D LTR ERVL 0 414 4 2126 134 3 0 chr9 6766156 6766454 -135504990 - AluJb SINE Alu -13 299 1 2329 110 0 16 chr9 6767016 6767333 -135504111 - AluSx SINE Alu 0 312 1 840 125 8 16 chr9 6767339 6767467 -135503977 - FLAM_C SINE Alu -10 133 7 420 274 42 38 chr9 6767849 6768016 -135503428 + MIR3 SINE MIR 4 172 -36 205 271 85 0 chr9 6768127 6768186 -135503258 + MIR3 SINE MIR 142 205 -3 501 290 10 62 chr9 6768411 6768604 -135502840 + MER5A DNA MER1_type 1 183 -6 528 220 165 11 chr9 6768982 6769140 -135502304 + MER5A DNA MER1_type 4 189 0 692 203 24 0 chr9 6769242 6769365 -135502079 - AluJb SINE Alu -46 266 141 1600 109 9 0 chr9 6769927 6770148 -135501296 + AluSq SINE Alu 77 299 -14 3326 234 109 26 chr9 6770412 6771581 -135499863 - HAL1 LINE L1 -540 1967 702 241 224 15 15 chr9 6771601 6771668 -135499776 + MLT1L LTR MaLR 15 81 -534 1278 228 71 63 chr9 6772869 6773378 -135498066 + HAL1 LINE L1 3 515 -1992 359 265 138 5 chr9 6773444 6773633 -135497811 + L1ME LINE L1 5391 5604 -517 370 184 178 55 chr9 6773639 6773802 -135497642 + L1ME LINE L1 5622 5804 -317 283 150 0 0 chr9 6773948 6774008 -135497436 + L1MC3 LINE L1 7726 7785 0 233 310 128 75 chr9 6774531 6774662 -135496782 - L2 LINE L2 -211 3061 2912 2023 136 16 48 chr9 6774662 6775038 -135496406 - THE1B LTR MaLR 0 364 1 233 310 128 75 chr9 6775038 6775132 -135496312 - L2 LINE L2 -360 2912 2824 532 227 102 6 chr9 6775316 6775492 -135495952 + L1ME3A LINE L1 5759 5951 -219 255 226 0 0 chr9 6775732 6775794 -135495650 + HsTC2 DNA Tc2 1 62 -1836 21 36 0 0 chr9 6775819 6775847 -135495597 + AT_rich Low_complexity Low_complexity 1 28 0 688 133 38 0 chr9 6775847 6775952 -135495492 - FRAM SINE Alu -21 155 47 13924 197 30 19 chr9 6775998 6778479 -135492965 + L1PB1 LINE L1 1 2454 -4434 207 69 0 0 chr9 6778479 6778508 -135492936 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 13924 197 30 19 chr9 6778508 6779403 -135492041 + L1PB1 LINE L1 2454 3338 -3550 2172 98 14 0 chr9 6779403 6779690 -135491754 + AluSc SINE Alu 3 293 -16 13924 197 30 19 chr9 6779690 6779910 -135491534 + L1PB1 LINE L1 3338 3554 -3334 2277 109 0 0 chr9 6779910 6780213 -135491231 + AluSx SINE Alu 1 303 -9 13924 197 30 19 chr9 6780213 6783229 -135488215 + L1PB1 LINE L1 3554 6888 0 594 183 40 40 chr9 6783230 6783356 -135488088 - FLAM_C SINE Alu -17 126 1 1865 173 84 13 chr9 6783359 6783752 -135487692 + MSTB LTR MaLR 2 422 -4 1219 152 107 49 chr9 6784046 6784324 -135487120 + AluJb SINE Alu 27 318 0 2044 178 18 13 chr9 6784798 6785181 -135486263 - MSTD LTR MaLR -11 385 1 5195 118 7 23 chr9 6787188 6788051 -135483393 - L1PA16 LINE L1 -1 6165 5317 2871 10 0 0 chr9 6788054 6788365 -135483079 - AluYa5 SINE Alu 0 311 1 679 198 93 0 chr9 6788368 6788530 -135482914 - L1 LINE L1 -1800 4346 4170 21 0 0 0 chr9 6792408 6792429 -135479015 + AT_rich Low_complexity Low_complexity 1 21 0 319 316 85 69 chr9 6792831 6793288 -135478156 - L2 LINE L2 -182 3090 2616 1199 181 188 19 chr9 6793811 6794120 -135477324 + MLT1A1 LTR MaLR 5 365 0 10761 143 48 87 chr9 6794579 6796817 -135474627 + L1M4c LINE L1 14 2142 -4242 2371 96 0 13 chr9 6796817 6797131 -135474313 - AluY SINE Alu -1 310 1 10761 143 48 87 chr9 6797131 6797432 -135474012 + L1M4c LINE L1 2142 2453 -3931 38155 71 7 4 chr9 6797432 6803562 -135467882 + L1PA5 LINE L1 3 6153 -1 4007 228 56 2 chr9 6803566 6804444 -135467000 + L1MA4 LINE L1 6 930 -6238 336 236 56 14 chr9 6804444 6804516 -135466928 + L1MA4 LINE L1 858 932 -6236 * 10775 175 92 31 chr9 6804513 6806541 -135464903 + L1MA4 LINE L1 3405 5309 -2012 850 169 0 0 chr9 6806541 6806671 -135464773 + FLAM_C SINE Alu 3 132 -1 10775 175 92 31 chr9 6806671 6806828 -135464616 + L1MA4 LINE L1 5309 5455 -1866 1719 186 3 37 chr9 6806828 6807151 -135464293 - AluJo SINE Alu 0 312 1 10775 175 92 31 chr9 6807151 6807262 -135464182 + L1MA4 LINE L1 5455 5558 -1763 1971 158 0 13 chr9 6807262 6807578 -135463866 + AluJb SINE Alu 1 312 0 10775 175 92 31 chr9 6807578 6808766 -135462678 + L1MA4 LINE L1 5558 7145 -176 2402 67 3 3 chr9 6808766 6809063 -135462381 - AluY SINE Alu -14 297 1 10775 175 92 31 chr9 6809063 6809247 -135462197 + L1MA4 LINE L1 7145 7316 -5 5169 226 33 23 chr9 6809260 6809820 -135461624 + L1M4c LINE L1 2439 2992 -3390 2275 104 0 0 chr9 6809820 6810109 -135461335 + AluY SINE Alu 1 289 -22 5169 226 33 23 chr9 6810109 6811391 -135460053 + L1M4c LINE L1 2992 4307 -2075 468 282 10 0 chr9 6811913 6812016 -135459428 - L2 LINE L2 0 3313 3210 1401 163 45 45 chr9 6812021 6812126 -135459318 + AluJo SINE Alu 7 111 -201 1786 109 70 4 chr9 6812126 6812383 -135459061 - AluSx SINE Alu -38 274 1 1401 163 45 45 chr9 6812383 6812566 -135458878 + AluJo SINE Alu 110 295 -17 530 292 13 0 chr9 6813148 6813302 -135458142 - MIR SINE MIR 0 262 107 322 253 0 13 chr9 6813302 6813377 -135458067 + MER39 LTR ERV1 1 74 -633 932 149 0 37 chr9 6813391 6813552 -135457892 + FRAM SINE Alu 18 172 -4 1119 206 47 117 chr9 6813597 6814067 -135457377 + MER39 LTR ERV1 269 705 -2 352 257 20 20 chr9 6814068 6814169 -135457275 - MIR SINE MIR -151 111 11 210 273 0 0 chr9 6814270 6814314 -135457130 + L2 LINE L2 2963 3006 -307 290 194 16 16 chr9 6814316 6814378 -135457066 + MLT1B LTR MaLR 4 65 -325 2498 50 17 0 chr9 6814702 6815001 -135456443 - AluY SINE Alu -7 304 1 1815 171 7 13 chr9 6815171 6815469 -135455975 + AluJo SINE Alu 3 298 -14 2394 94 0 0 chr9 6816537 6816836 -135454608 + AluSg SINE Alu 1 299 -11 744 157 58 8 chr9 6817751 6817872 -135453572 - FLAM_A SINE Alu -2 131 5 744 258 97 5 chr9 6817950 6818167 -135453277 - MIR SINE MIR -18 244 8 252 130 0 0 chr9 6819167 6819213 -135452231 + (A)n Simple_repeat Simple_repeat 1 46 0 184 342 165 13 chr9 6819956 6820114 -135451330 + L2 LINE L2 2755 2936 -378 726 312 26 26 chr9 6820119 6820388 -135451056 + MER115 DNA AcHobo 34 302 -391 2300 90 0 34 chr9 6821500 6821822 -135449622 - AluSx SINE Alu -1 311 1 1285 312 71 47 chr9 6821918 6822059 -135449385 - ERVL LTR ERVL -3046 2608 2472 2325 84 3 0 chr9 6822059 6822375 -135449069 + AluSq SINE Alu 2 318 0 1285 312 71 47 chr9 6822375 6823351 -135448093 - ERVL LTR ERVL -3182 2472 1449 1019 340 52 38 chr9 6823503 6824261 -135447183 - ERVL LTR ERVL -3809 1187 420 1634 188 50 10 chr9 6824723 6824842 -135446602 + AluJo SINE Alu 2 115 -197 2227 95 0 7 chr9 6824842 6825136 -135446308 + AluSg SINE Alu 1 292 -18 1634 188 50 10 chr9 6825136 6825314 -135446130 + AluJo SINE Alu 115 311 -1 2166 139 0 0 chr9 6825314 6825617 -135445827 + AluSx SINE Alu 1 303 -9 2083 129 17 0 chr9 6825619 6825913 -135445531 + AluSx SINE Alu 1 299 -13 2112 183 39 39 chr9 6826355 6826819 -135444625 - MER67A LTR ERV1 0 543 80 294 154 282 0 chr9 6826887 6826965 -135444479 - MER67A LTR ERV1 -443 100 1 231 167 0 0 chr9 6827111 6827153 -135444291 + (TTCA)n Simple_repeat Simple_repeat 3 44 0 1781 186 3 0 chr9 6827966 6828262 -135443182 + AluJb SINE Alu 1 297 -15 803 215 0 0 chr9 6828267 6828411 -135443033 + AluSg/x SINE Alu 165 308 -2 360 94 0 0 chr9 6828411 6828464 -135442980 + (GGGA)n Simple_repeat Simple_repeat 1 53 0 311 243 112 57 chr9 6828949 6829086 -135442358 + MER5A DNA MER1_type 29 186 -3 337 268 0 0 chr9 6829095 6829166 -135442278 + L1ME LINE L1 5512 5582 -539 15042 141 12 6 chr9 6829703 6831943 -135439501 + L1MA3 LINE L1 12 2264 -5301 1830 166 7 7 chr9 6831943 6832245 -135439199 - AluJb SINE Alu -10 302 1 4723 135 3 7 chr9 6832262 6832953 -135438491 + THE1-int LTR MaLR 629 1316 -264 384 129 16 0 chr9 6832953 6833015 -135438429 - MER61A LTR ERV1 -280 63 1 17498 79 49 22 chr9 6833015 6835257 -135436187 - MER61A-int LTR ERV1 0 5217 2903 1966 135 7 3 chr9 6835257 6835553 -135435891 + AluSx SINE Alu 1 297 -15 17498 79 49 22 chr9 6835553 6835754 -135435690 - MER61A-int LTR ERV1 -2314 2903 2709 15736 84 5 0 chr9 6835763 6837819 -135433625 + L1P LINE L1 11 2077 -4069 44061 50 1 4 chr9 6837819 6843985 -135427459 + L1PA5 LINE L1 2 6147 -7 8320 88 82 25 chr9 6844003 6845125 -135426319 - MER61A-int LTR ERV1 -2496 2721 1510 1892 117 60 0 chr9 6845125 6845406 -135426038 + AluY SINE Alu 13 310 -1 8320 88 82 25 chr9 6845406 6845609 -135425835 - MER61A-int LTR ERV1 -3707 1510 1320 337 134 45 15 chr9 6845583 6845650 -135425794 - MER61A-int LTR ERV1 -4418 799 731 * 2712 176 35 20 chr9 6845712 6846251 -135425193 - MER61A-int LTR ERV1 -4668 549 3 1941 135 74 19 chr9 6846252 6846577 -135424867 - MER61A LTR ERV1 0 343 1 15881 164 20 25 chr9 6846577 6846819 -135424625 + L1MA3 LINE L1 3353 3595 -4129 1703 180 0 66 chr9 6846819 6847153 -135424291 + AluJb SINE Alu 1 312 0 15881 164 20 25 chr9 6847153 6847499 -135423945 + L1MA3 LINE L1 3595 3941 -3783 2305 85 3 3 chr9 6847499 6847792 -135423652 + AluSp SINE Alu 1 293 -20 15881 164 20 25 chr9 6847792 6848968 -135422476 + L1MA3 LINE L1 3941 5121 -2603 21572 30 3 0 chr9 6848968 6852179 -135419265 - L1PA3 LINE L1 0 6155 2938 15881 164 20 25 chr9 6852179 6852279 -135419165 + L1MA3 LINE L1 5121 5220 -2504 1371 203 43 14 chr9 6852279 6852560 -135418884 + AluJo SINE Alu 1 289 -23 15881 164 20 25 chr9 6852560 6854943 -135416501 + L1MA3 LINE L1 5220 7557 -167 1903 169 0 6 chr9 6854943 6855257 -135416187 + AluSx SINE Alu 1 312 0 15881 164 20 25 chr9 6855257 6855423 -135416021 + L1MA3 LINE L1 7557 7722 -2 306 73 0 0 chr9 6855460 6855501 -135415943 + (TG)n Simple_repeat Simple_repeat 2 42 0 1276 194 68 4 chr9 6855529 6855667 -135415777 - AluJb SINE Alu -35 277 149 276 30 0 0 chr9 6855667 6855700 -135415744 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 1276 194 68 4 chr9 6855700 6855813 -135415631 - AluJb SINE Alu -163 149 10 31 76 0 0 chr9 6855813 6855879 -135415565 + AT_rich Low_complexity Low_complexity 1 66 0 189 0 0 0 chr9 6855879 6855900 -135415544 + (TTATA)n Simple_repeat Simple_repeat 4 24 0 2142 136 0 0 chr9 6856027 6856328 -135415116 + AluSx SINE Alu 1 301 -11 334 271 140 28 chr9 6856333 6856551 -135414893 + L1ME LINE L1 5631 5820 -301 1278 186 7 52 chr9 6857264 6857533 -135413911 - AluJb SINE Alu -18 294 38 1805 132 50 46 chr9 6858117 6858470 -135412974 + MLT1B LTR MaLR 3 392 -36 341 176 29 29 chr9 6858630 6858698 -135412746 + MLT1B LTR MaLR 323 390 0 2134 135 0 0 chr9 6858773 6859069 -135412375 + AluSx SINE Alu 1 296 -16 561 144 25 8 chr9 6859083 6859201 -135412243 + GA-rich Low_complexity Low_complexity 1 120 0 1855 149 7 13 chr9 6859549 6859850 -135411594 + AluJo SINE Alu 7 305 -7 746 196 15 23 chr9 6860770 6860903 -135410541 + FLAM_A SINE Alu 2 133 0 204 275 33 33 chr9 6861360 6861451 -135409993 + (CATA)n Simple_repeat Simple_repeat 4 94 0 206 163 41 0 chr9 6861451 6861500 -135409944 + (CATG)n Simple_repeat Simple_repeat 4 54 0 1953 120 11 0 chr9 6861617 6861926 -135409518 - AluSx SINE Alu 0 312 1 2504 230 109 45 chr9 6862143 6862935 -135408509 - L1ME3 LINE L1 -16 6146 5305 941 207 57 10 chr9 6862992 6863185 -135408259 + MER8 DNA MER2_type 1 202 -37 450 139 0 28 chr9 6863431 6863503 -135407941 + Tigger2 DNA MER2_type 1 70 -2648 2366 83 0 13 chr9 6863730 6864030 -135407414 + AluY SINE Alu 1 296 -15 1226 124 0 0 chr9 6864033 6864202 -135407242 + AluSg/x SINE Alu 130 298 -14 1269 204 12 12 chr9 6864203 6864453 -135406991 + MLT1H LTR MaLR 22 271 -278 2127 138 0 0 chr9 6864579 6864891 -135406553 + AluSx SINE Alu 1 312 0 574 248 46 100 chr9 6864998 6865215 -135406229 + Tigger8 DNA MER2_type 155 347 -319 1718 183 3 3 chr9 6865215 6865505 -135405939 + AluJb SINE Alu 6 295 -17 574 248 46 100 chr9 6865505 6865638 -135405806 + Tigger8 DNA MER2_type 347 486 -180 298 238 72 0 chr9 6865757 6865876 -135405568 + L1ME LINE L1 5631 5765 -397 1578 158 18 32 chr9 6865879 6866157 -135405287 + AluJo SINE Alu 1 274 -38 793 273 24 14 chr9 6866261 6866470 -135404974 + MER58A DNA MER1_type 4 214 -10 1709 197 0 7 chr9 6866816 6867110 -135404334 - AluJo SINE Alu -20 292 1 1133 226 8 77 chr9 6867178 6867358 -135404086 + MLT1G1 LTR MaLR 1 106 -484 2355 75 9 40 chr9 6867358 6867680 -135403764 + AluSx SINE Alu 1 312 0 1133 226 8 77 chr9 6867680 6867859 -135403585 + MLT1G1 LTR MaLR 106 296 -294 290 138 35 11 chr9 6867886 6867973 -135403471 + GA-rich Low_complexity Low_complexity 2 90 0 420 221 11 72 chr9 6868010 6868151 -135403293 + MLT1F1 LTR MaLR 425 530 -37 1363 175 163 44 chr9 6868245 6868448 -135402996 - LTR54B LTR ERV1 -11 487 310 2255 119 0 0 chr9 6868448 6868743 -135402701 - AluSx SINE Alu -17 295 1 1363 175 163 44 chr9 6868743 6868953 -135402491 - LTR54B LTR ERV1 -188 310 17 2006 133 0 36 chr9 6868953 6869261 -135402183 - AluSx SINE Alu -15 297 1 1363 175 163 44 chr9 6869261 6869281 -135402163 - LTR54B LTR ERV1 -481 17 1 275 259 206 46 chr9 6869573 6869704 -135401740 + MIR3 SINE MIR 21 172 -36 1871 175 3 0 chr9 6870659 6870967 -135400477 + AluSx SINE Alu 1 309 -3 201 341 49 71 chr9 6871453 6871864 -135399580 + L2 LINE L2 2257 2658 -656 253 275 174 9 chr9 6872214 6872323 -135399121 - MIR SINE MIR -119 143 17 545 105 13 0 chr9 6872682 6872758 -135398686 - MADE1 DNA Mariner -3 77 1 2336 92 0 7 chr9 6872930 6873234 -135398210 - AluSx SINE Alu -10 302 1 1326 47 0 10 chr9 6873473 6873711 -135397733 + AluY SINE Alu 2 286 -25 279 0 0 0 chr9 6873711 6873742 -135397702 + (CATA)n Simple_repeat Simple_repeat 2 32 0 1326 47 0 10 chr9 6873742 6873761 -135397683 + AluY SINE Alu 286 304 -7 30 0 0 0 chr9 6874967 6874997 -135396447 + GC_rich Low_complexity Low_complexity 1 30 0 325 290 54 0 chr9 6877106 6877199 -135394245 - MER91B DNA MER1_type -1 189 92 460 149 243 68 chr9 6877443 6877591 -135393853 + MER5A DNA MER1_type 10 183 -6 1998 103 19 23 chr9 6877612 6877922 -135393522 - AluSc SINE Alu 0 309 1 2417 28 52 0 chr9 6878090 6878381 -135393063 - AluY SINE Alu -5 306 1 185 123 53 18 chr9 6878572 6878629 -135392815 + (TA)n Simple_repeat Simple_repeat 1 59 0 23 0 0 0 chr9 6879814 6879837 -135391607 + AT_rich Low_complexity Low_complexity 1 23 0 1690 168 144 47 chr9 6880331 6880753 -135390691 - MLT1C LTR MaLR -4 463 1 357 179 64 13 chr9 6880780 6880858 -135390586 - MLT1B LTR MaLR -271 119 38 1488 161 38 65 chr9 6881288 6881603 -135389841 - AluJb SINE Alu 0 307 1 2069 112 17 3 chr9 6881615 6881909 -135389535 - AluSg SINE Alu -12 298 1 2300 63 7 17 chr9 6881977 6882276 -135389168 + AluY SINE Alu 1 296 -15 2131 119 0 16 chr9 6882961 6883271 -135388173 - AluSx SINE Alu -7 305 1 453 260 136 16 chr9 6883475 6883688 -135387756 - L1ME3A LINE L1 -321 5800 5612 1233 117 6 0 chr9 6883741 6883912 -135387532 - AluSg SINE Alu -116 194 23 474 271 86 24 chr9 6883915 6884170 -135387274 - L1ME3A LINE L1 -1384 4762 4492 987 148 12 0 chr9 6884170 6884332 -135387112 - AluJb SINE Alu -18 294 131 2246 108 0 3 chr9 6885218 6885523 -135385921 + AluSg SINE Alu 1 304 -6 349 285 46 8 chr9 6885586 6885716 -135385728 + L1 LINE L1 4060 4194 -1952 2571 153 244 139 chr9 6886074 6886641 -135384803 - L1MC3 LINE L1 -2 7783 7276 271 214 39 78 chr9 6886641 6886744 -135384700 - MLT1F1 LTR MaLR -442 125 27 2571 153 244 139 chr9 6886744 6887027 -135384417 - L1MC3 LINE L1 -509 7276 7024 2009 115 13 35 chr9 6887027 6887341 -135384103 + AluSx SINE Alu 1 307 -5 2571 153 244 139 chr9 6887341 6887491 -135383953 - L1MC3 LINE L1 -761 7024 6565 209 370 69 40 chr9 6887834 6888007 -135383437 + MIR SINE MIR 1 178 -84 2176 118 10 0 chr9 6888297 6888602 -135382842 - AluSq SINE Alu -5 308 1 2022 134 7 0 chr9 6888959 6889251 -135382193 + AluSx SINE Alu 1 294 -18 249 278 35 43 chr9 6889826 6889941 -135381503 - L1ME3A LINE L1 -95 6075 5962 1911 160 20 0 chr9 6890096 6890402 -135381042 - AluJo SINE Alu 0 312 1 2048 134 3 7 chr9 6890436 6890735 -135380709 + AluSx SINE Alu 1 298 -14 182 369 98 16 chr9 6890749 6890871 -135380573 + MIR SINE MIR 19 150 -112 360 191 0 0 chr9 6890967 6891035 -135380409 - Alu SINE Alu 0 301 234 1043 95 0 20 chr9 6891035 6891183 -135380261 - AluSq/x SINE Alu -165 147 3 261 308 64 0 chr9 6891332 6891410 -135380034 - MIR SINE MIR -149 113 31 1941 145 17 0 chr9 6891574 6891864 -135379580 - AluSq SINE Alu -18 295 1 1830 213 107 22 chr9 6891993 6892481 -135378963 + MER74B LTR ERVL 78 606 -16 1281 199 102 0 chr9 6892880 6893146 -135378298 + AluJo SINE Alu 1 293 -19 320 331 142 7 chr9 6894011 6894159 -135377285 + MIR SINE MIR 6 173 -89 2113 109 31 7 chr9 6894394 6894688 -135376756 - AluSx SINE Alu -11 301 1 2099 118 7 7 chr9 6896004 6896293 -135375151 - AluSx SINE Alu -23 289 1 1402 204 25 32 chr9 6896405 6896554 -135374890 - AluJb SINE Alu -32 280 132 1986 105 54 14 chr9 6896554 6896848 -135374596 - AluSx SINE Alu -6 306 1 1402 204 25 32 chr9 6896848 6896978 -135374466 - AluJb SINE Alu -180 132 3 544 164 239 13 chr9 6896988 6897147 -135374297 - L1MB7 LINE L1 0 6184 5990 1942 130 0 7 chr9 6897158 6897463 -135373981 - AluSx SINE Alu 0 303 1 2092 143 0 0 chr9 6898779 6899087 -135372357 - AluSx SINE Alu -4 308 1 455 328 218 29 chr9 6899092 6899162 -135372282 + L3 LINE CR1 916 971 -606 1904 158 20 0 chr9 6899162 6899466 -135371978 - AluSx SINE Alu -2 310 1 455 328 218 29 chr9 6899466 6899922 -135371522 + L3 LINE CR1 971 1542 -35 1418 142 134 0 chr9 6900741 6900994 -135370450 - AluSx SINE Alu -12 300 14 21 0 0 0 chr9 6902081 6902102 -135369342 + AT_rich Low_complexity Low_complexity 1 21 0 312 282 58 83 chr9 6902330 6902486 -135368958 - MER5B DNA MER1_type -1 177 26 277 146 42 0 chr9 6902528 6902576 -135368868 - MER5B DNA MER1_type -128 50 1 598 180 33 161 chr9 6902584 6902657 -135368787 + MER5A DNA MER1_type 1 82 -107 1755 154 17 33 chr9 6902657 6902956 -135368488 + AluJb SINE Alu 7 300 -12 598 180 33 161 chr9 6902956 6903093 -135368351 + MER5A DNA MER1_type 82 184 -5 1864 137 7 0 chr9 6903547 6903818 -135367626 - AluSx SINE Alu -39 273 1 1602 167 7 48 chr9 6904006 6904344 -135367100 - AluJo SINE Alu 0 327 2 449 269 173 15 chr9 6904830 6905027 -135366417 - MIR SINE MIR -32 230 3 211 235 20 92 chr9 6906062 6906160 -135365284 - MER5A DNA MER1_type -32 157 67 2084 125 3 3 chr9 6906160 6906456 -135364988 - AluSq SINE Alu -17 296 1 934 145 0 36 chr9 6906563 6906701 -135364743 + FLAM_C SINE Alu 1 133 0 1913 137 11 0 chr9 6906838 6907115 -135364329 - AluSx SINE Alu -32 280 1 1804 161 0 20 chr9 6907117 6907409 -135364035 - AluJo SINE Alu -17 295 10 1544 165 0 26 chr9 6907536 6907714 -135363730 - AluJb SINE Alu -2 310 140 1934 124 39 0 chr9 6907714 6907997 -135363447 - AluSx SINE Alu -18 294 1 1544 165 0 26 chr9 6907997 6908091 -135363353 - AluJb SINE Alu -172 140 45 1869 151 24 10 chr9 6908123 6908421 -135363023 + AluSx SINE Alu 3 304 -8 2385 79 0 3 chr9 6908451 6908743 -135362701 - AluY SINE Alu -20 291 1 605 289 73 50 chr9 6909160 6909503 -135361941 + HAL1 LINE L1 1 351 -2156 686 228 159 38 chr9 6909545 6909940 -135361504 + HAL1 LINE L1 1728 2170 -337 317 259 265 24 chr9 6909988 6910154 -135361290 + MIR SINE MIR 17 222 -40 280 229 141 65 chr9 6910232 6910402 -135361042 + HAL1 LINE L1 2305 2487 -20 419 235 17 9 chr9 6910525 6910640 -135360804 - L1MC5 LINE L1 -102 7859 7744 306 323 8 24 chr9 6910717 6910841 -135360603 + LTR16B LTR ERVL 34 155 -309 265 321 28 9 chr9 6910939 6911048 -135360396 + LTR16B LTR ERVL 292 402 -62 637 249 121 66 chr9 6911094 6911113 -135360331 - L1MC5 LINE L1 -254 7707 7690 2438 175 68 68 chr9 6911113 6911673 -135359771 + MER68 LTR ERV1 3 562 0 637 249 121 66 chr9 6911673 6912091 -135359353 - L1MC5 LINE L1 -271 7690 7246 416 201 179 80 chr9 6912165 6912560 -135358884 - L1MC5 LINE L1 -888 6920 6563 2227 53 36 13 chr9 6913021 6913325 -135358119 - AluY SINE Alu 0 311 1 237 33 0 0 chr9 6913328 6913358 -135358086 + (TTG)n Simple_repeat Simple_repeat 1 30 0 822 74 0 50 chr9 6913358 6913464 -135357980 - AluSc SINE Alu -32 277 174 254 243 0 27 chr9 6913525 6913599 -135357845 + (TA)n Simple_repeat Simple_repeat 1 72 0 890 281 91 12 chr9 6913600 6914017 -135357427 - L1MC5 LINE L1 -1883 5925 5476 212 298 114 23 chr9 6914277 6914408 -135357036 - L2 LINE L2 -913 2401 2259 1812 123 0 11 chr9 6915214 6915474 -135355970 + AluY SINE Alu 40 296 -15 425 300 79 11 chr9 6915564 6915754 -135355690 - MIR SINE MIR 0 262 60 914 189 86 6 chr9 6916398 6916573 -135354871 - MER5A DNA MER1_type 0 189 1 207 0 0 0 chr9 6916685 6916708 -135354736 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3432 53 0 2 chr9 6916708 6916906 -135354538 - L1PA5 LINE L1 -16 6138 5941 15270 100 24 33 chr9 6916906 6917257 -135354187 - L1MA4A LINE L1 -362 5941 5588 1756 187 7 0 chr9 6917257 6917556 -135353888 + AluJb SINE Alu 1 301 -11 15270 100 24 33 chr9 6917556 6920149 -135351295 - L1MA4A LINE L1 -715 5588 3049 5076 55 12 5 chr9 6920149 6920783 -135350661 + L1PA7 LINE L1 5496 6153 -1 15270 100 24 33 chr9 6920783 6920808 -135350636 - L1MA4A LINE L1 -3254 3049 3025 2283 110 0 0 chr9 6920941 6921241 -135350203 + AluSx SINE Alu 1 300 -12 1577 209 3 0 chr9 6921246 6921543 -135349901 + AluJo SINE Alu 1 298 -14 285 149 14 27 chr9 6922881 6922955 -135348489 + CT-rich Low_complexity Low_complexity 1 73 0 1916 133 4 0 chr9 6922955 6923226 -135348218 - AluSx SINE Alu -40 272 1 304 218 149 0 chr9 6923411 6923498 -135347946 - L1ME LINE L1 -385 5736 5637 22 35 0 0 chr9 6923539 6923568 -135347876 + AT_rich Low_complexity Low_complexity 1 29 0 850 236 6 0 chr9 6923691 6923873 -135347571 + MER58A DNA MER1_type 42 224 0 21 0 0 0 chr9 6923875 6923896 -135347548 + AT_rich Low_complexity Low_complexity 1 21 0 2215 115 0 0 chr9 6924191 6924479 -135346965 + AluSg SINE Alu 1 288 -22 2107 118 7 3 chr9 6924554 6924850 -135346594 + AluSp SINE Alu 1 297 -16 1854 155 3 3 chr9 6925026 6925323 -135346121 - AluSx SINE Alu -13 299 3 22 0 0 0 chr9 6925325 6925347 -135346097 + AT_rich Low_complexity Low_complexity 1 22 0 732 256 105 49 chr9 6925406 6926358 -135345086 - L1ME LINE L1 -402 5768 4759 301 327 99 6 chr9 6926454 6926766 -135344678 - L1ME LINE L1 -1800 4346 4006 729 265 161 12 chr9 6926774 6927291 -135344153 - L1ME LINE L1 -2381 3765 3172 1040 118 0 0 chr9 6927673 6927809 -135343635 + AluSq/x SINE Alu 1 136 -177 2277 121 0 6 chr9 6927810 6928124 -135343320 + AluSx SINE Alu 1 312 0 728 247 103 0 chr9 6928288 6928482 -135342962 + L2 LINE L2 2864 3077 -236 2132 85 4 4 chr9 6929997 6930268 -135341176 - AluY SINE Alu -40 271 1 1921 141 0 35 chr9 6931192 6931505 -135339939 - AluJb SINE Alu -10 302 1 356 143 14 0 chr9 6931505 6931575 -135339869 + L1MD2 LINE L1 6289 6359 0 2054 136 3 10 chr9 6931666 6931797 -135339647 + AluSx SINE Alu 5 135 -177 2086 151 0 0 chr9 6931797 6932108 -135339336 + AluSq SINE Alu 1 311 -2 2054 136 3 10 chr9 6932108 6932286 -135339158 + AluSx SINE Alu 135 312 0 188 377 124 22 chr9 6933000 6933501 -135337943 + L2 LINE L2 2380 2931 -383 873 81 15 37 chr9 6933645 6933781 -135337663 - FLAM_C SINE Alu 0 133 1 315 253 33 11 chr9 6933990 6934081 -135337363 + L2 LINE L2 2377 2469 -845 282 240 145 45 chr9 6934244 6934371 -135337073 + HAL1 LINE L1 2129 2285 -222 2511 80 3 0 chr9 6934371 6934682 -135336762 + AluSp SINE Alu 1 312 -1 282 240 145 45 chr9 6934682 6934754 -135336690 + HAL1 LINE L1 2285 2348 -159 1104 195 73 41 chr9 6934755 6935001 -135336443 + AluJb SINE Alu 1 254 -58 228 321 0 0 chr9 6935001 6935054 -135336390 + G-rich Low_complexity Low_complexity 1 53 0 1334 174 51 68 chr9 6935185 6935479 -135335965 + AluJo SINE Alu 21 309 -3 2414 94 3 0 chr9 6935552 6935860 -135335584 + AluSp SINE Alu 1 309 -4 25 51 0 0 chr9 6935870 6935909 -135335535 + AT_rich Low_complexity Low_complexity 1 39 0 1424 181 55 66 chr9 6935939 6936193 -135335251 - MER2 DNA MER2_type 0 344 94 2194 120 3 0 chr9 6936193 6936492 -135334952 - AluSx SINE Alu -7 305 6 1424 181 55 66 chr9 6936492 6936585 -135334859 - MER2 DNA MER2_type -250 94 1 2195 84 38 3 chr9 6936656 6936943 -135334501 + AluY SINE Alu 1 297 -14 1306 173 47 17 chr9 6938562 6938911 -135332533 - L1MC/D LINE L1 -517 5663 5290 368 272 158 16 chr9 6939305 6939489 -135331955 + MIR SINE MIR 49 258 -4 2149 144 0 0 chr9 6939515 6939814 -135331630 + AluSx SINE Alu 1 299 -13 538 191 122 63 chr9 6940364 6940553 -135330891 + MIR SINE MIR 13 212 -50 841 161 0 15 chr9 6941066 6941203 -135330241 - FLAM_C SINE Alu -8 135 1 23 54 0 0 chr9 6943420 6943457 -135327987 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr9 6944488 6944509 -135326935 + AT_rich Low_complexity Low_complexity 1 21 0 2015 137 0 3 chr9 6944704 6944997 -135326447 - AluSx SINE Alu -20 292 1 198 0 0 0 chr9 6945157 6945179 -135326265 + (A)n Simple_repeat Simple_repeat 1 22 0 684 259 153 35 chr9 6946211 6946392 -135325052 - L1ME4a LINE L1 -7 6114 5956 1528 174 0 33 chr9 6946392 6946668 -135324776 - AluJo SINE Alu -45 267 1 684 259 153 35 chr9 6946668 6947023 -135324421 - L1ME4a LINE L1 -165 5956 5515 358 143 0 0 chr9 6947371 6947427 -135324017 + AluS SINE Alu 2 57 -251 * 5456 117 56 32 chr9 6947425 6947522 -135323922 + Tigger3b DNA MER2_type 191 284 -2744 2044 126 0 0 chr9 6947522 6947836 -135323608 - AluSx SINE Alu 0 314 1 5456 117 56 32 chr9 6947836 6948016 -135323428 + Tigger3b DNA MER2_type 284 458 -2570 1788 154 7 30 chr9 6948016 6948315 -135323129 + AluJb SINE Alu 1 292 -20 5456 117 56 32 chr9 6948315 6948576 -135322868 + Tigger3b DNA MER2_type 458 711 -2317 2249 109 0 0 chr9 6948576 6948870 -135322574 + AluSx SINE Alu 2 295 -17 5456 117 56 32 chr9 6948870 6949345 -135322099 + Tigger3b DNA MER2_type 711 1231 0 2315 96 7 0 chr9 6949395 6949696 -135321748 - AluSp SINE Alu -9 304 2 558 280 58 13 chr9 6949856 6950081 -135321363 - AluSg/x SINE Alu -12 300 66 2744 149 30 20 chr9 6950530 6951068 -135320376 + L1MA4 LINE L1 5750 6292 -8 21 0 0 0 chr9 6951068 6951089 -135320355 + AT_rich Low_complexity Low_complexity 1 21 0 21 82 0 0 chr9 6951894 6951943 -135319501 + AT_rich Low_complexity Low_complexity 1 49 0 2177 130 3 0 chr9 6952081 6952389 -135319055 - AluSx SINE Alu -3 309 1 410 247 55 22 chr9 6952798 6952980 -135318464 - L1MC5 LINE L1 -444 7517 7330 649 208 29 29 chr9 6952995 6953168 -135318276 + MER58B DNA MER1_type 169 341 0 1223 225 143 54 chr9 6953180 6953908 -135317536 - L1MC5 LINE L1 -630 7331 6543 502 221 52 100 chr9 6954614 6954845 -135316599 + L1ME1 LINE L1 5944 6163 -1 594 200 0 17 chr9 6955094 6955209 -135316235 - MLT1F LTR MaLR -85 457 345 763 256 29 33 chr9 6955221 6955463 -135315981 - MLT1F LTR MaLR -301 241 1 1454 295 185 35 chr9 6955878 6957014 -135314430 - L2 LINE L2 -526 2788 1483 181 311 16 0 chr9 6957460 6957521 -135313923 + MIR SINE MIR 180 241 -21 255 343 113 64 chr9 6957576 6957985 -135313459 - L2 LINE L2 -225 3047 2596 2301 103 0 3 chr9 6958396 6958688 -135312756 - AluSp SINE Alu -22 291 1 1916 114 0 11 chr9 6958688 6958951 -135312493 - AluSx SINE Alu -21 291 32 6861 112 12 9 chr9 6959238 6960670 -135310774 + L1MA1 LINE L1 4869 6302 0 1879 218 95 57 chr9 6960687 6961734 -135309710 + L1MD2 LINE L1 5241 6344 -15 2378 95 0 3 chr9 6961737 6962041 -135309403 + AluSx SINE Alu 1 303 -9 1627 207 111 53 chr9 6962763 6963275 -135308169 - MLT1F LTR MaLR 0 542 1 1566 161 4 12 chr9 6963389 6963637 -135307807 + AluJb SINE Alu 1 246 -66 978 282 108 5 chr9 6963719 6964088 -135307356 - MLT1I LTR MaLR -2 407 1 695 221 202 19 chr9 6964143 6964450 -135306994 + L1ME LINE L1 5452 5814 -350 387 245 106 59 chr9 6965310 6965547 -135305897 + L1MC5 LINE L1 7246 7493 -468 2687 23 0 0 chr9 6965587 6965887 -135305557 - AluYa5 SINE Alu -11 300 1 232 218 149 0 chr9 6966072 6966159 -135305285 - L1ME LINE L1 -385 5736 5637 22 35 0 0 chr9 6966200 6966229 -135305215 + AT_rich Low_complexity Low_complexity 1 29 0 920 236 6 0 chr9 6966352 6966534 -135304910 + MER58A DNA MER1_type 42 224 0 21 0 0 0 chr9 6966536 6966557 -135304887 + AT_rich Low_complexity Low_complexity 1 21 0 2229 115 0 0 chr9 6966852 6967140 -135304304 + AluSg SINE Alu 1 288 -22 2114 119 7 3 chr9 6967215 6967510 -135303934 + AluSp SINE Alu 1 296 -17 1851 158 3 3 chr9 6967686 6967983 -135303461 - AluSx SINE Alu -13 299 3 22 0 0 0 chr9 6967985 6968007 -135303437 + AT_rich Low_complexity Low_complexity 1 22 0 909 256 105 49 chr9 6968067 6969019 -135302425 - L1ME LINE L1 -402 5751 4742 388 320 99 6 chr9 6969115 6969427 -135302017 - L1ME LINE L1 -1800 4329 3989 916 264 160 11 chr9 6969435 6969955 -135301489 - L1ME LINE L1 -2381 3748 3152 1044 118 0 0 chr9 6970334 6970470 -135300974 + AluSq/x SINE Alu 1 136 -177 2217 127 0 6 chr9 6970471 6970785 -135300659 + AluSx SINE Alu 1 312 0 576 259 73 54 chr9 6970947 6971220 -135300224 + L2 LINE L2 2864 3145 -168 1719 203 97 32 chr9 6971220 6971694 -135299750 - MLT1D LTR MaLR 0 505 1 576 259 73 54 chr9 6971694 6971733 -135299711 + L2 LINE L2 3145 3182 -131 198 0 0 0 chr9 6971809 6971831 -135299613 + (T)n Simple_repeat Simple_repeat 1 22 0 252 339 15 31 chr9 6971950 6972080 -135299364 - L1ME LINE L1 -5553 566 439 562 248 29 79 chr9 6973517 6973764 -135297680 - L1MC5 LINE L1 -37 7924 7691 1613 205 0 3 chr9 6973764 6974061 -135297383 + AluJb SINE Alu 1 296 -16 562 248 29 79 chr9 6974061 6974091 -135297353 - L1MC5 LINE L1 -270 7691 7661 255 221 91 0 chr9 6974138 6974215 -135297229 - U13 snRNA snRNA -2 102 19 32 86 0 0 chr9 6974550 6974631 -135296813 + AT_rich Low_complexity Low_complexity 1 81 0 180 262 119 32 chr9 6974683 6974809 -135296635 - MIR SINE MIR -55 153 17 216 163 0 0 chr9 6974928 6974971 -135296473 + A-rich Low_complexity Low_complexity 1 43 0 304 204 11 45 chr9 6975178 6975266 -135296178 + MIR SINE MIR 96 180 -82 223 57 86 0 chr9 6975367 6975402 -135296042 + L2 LINE L2 3017 3054 -259 189 0 0 0 chr9 6975995 6976016 -135295428 + (TC)n Simple_repeat Simple_repeat 2 22 0 2293 114 0 3 chr9 6976371 6976678 -135294766 + AluSx SINE Alu 2 307 -5 23 33 0 0 chr9 6977090 6977120 -135294324 + AT_rich Low_complexity Low_complexity 1 30 0 2243 116 0 0 chr9 6977177 6977479 -135293965 + AluSg SINE Alu 2 303 -7 1881 138 0 28 chr9 6977490 6977781 -135293663 + AluSx SINE Alu 1 283 -29 2387 103 0 0 chr9 6978376 6978678 -135292766 + AluSq SINE Alu 1 302 -11 26 30 0 0 chr9 6978693 6978726 -135292718 + AT_rich Low_complexity Low_complexity 1 33 0 258 280 49 21 chr9 6978890 6979033 -135292411 + L1M4 LINE L1 4599 4745 -1401 2733 167 5 92 chr9 6979034 6979608 -135291836 - MER44D DNA MER2_type 0 605 27 1468 213 119 20 chr9 6979618 6980065 -135291379 + L1M4 LINE L1 4744 5234 -912 387 291 17 26 chr9 6980548 6980665 -135290779 + LTR67 LTR ERVL 432 547 -10 420 129 0 0 chr9 6980933 6980995 -135290449 + AluSp SINE Alu 137 198 -115 2010 116 0 34 chr9 6980995 6981287 -135290157 + AluSx SINE Alu 23 304 -8 450 131 7 189 chr9 6981946 6982030 -135289414 + MER5A DNA MER1_type 1 46 -143 1965 103 41 0 chr9 6982030 6982301 -135289143 + AluSx SINE Alu 31 312 0 450 131 7 189 chr9 6982301 6982369 -135289075 + MER5A DNA MER1_type 46 125 -64 302 233 103 43 chr9 6982574 6982690 -135288754 + MER117 DNA MER1_type 53 175 -22 1199 128 0 22 chr9 6982857 6983037 -135288407 + AluSg/x SINE Alu 134 309 -3 440 227 0 42 chr9 6983055 6983174 -135288270 - MER5B DNA MER1_type -64 114 1 968 181 39 6 chr9 6983182 6983364 -135288080 + MER5A DNA MER1_type 2 189 0 1779 171 6 16 chr9 6983938 6984253 -135287191 - MLT1A1 LTR MaLR 0 365 54 1363 106 5 0 chr9 6984259 6984448 -135286996 - AluSq SINE Alu -1 312 123 253 278 195 73 chr9 6985135 6985291 -135286153 + MIR SINE MIR 33 221 -41 2197 115 3 13 chr9 6985291 6985603 -135285841 + AluSq SINE Alu 1 309 -4 253 278 195 73 chr9 6985603 6985651 -135285793 + MIR SINE MIR 221 262 0 495 273 67 70 chr9 6985888 6986116 -135285328 + MLT1J LTR MaLR 1 229 -282 2426 97 0 3 chr9 6986116 6986426 -135285018 - AluSx SINE Alu -3 309 1 495 273 67 70 chr9 6986426 6986553 -135284891 + MLT1J LTR MaLR 229 355 -156 2193 125 3 0 chr9 6987953 6988249 -135283195 + AluSp SINE Alu 1 297 -16 2156 67 103 0 chr9 6988307 6988589 -135282855 + AluY SINE Alu 1 311 0 418 298 123 21 chr9 6990688 6991111 -135280333 + L1ME4a LINE L1 5635 6100 -21 200 139 0 28 chr9 6991196 6991232 -135280212 - MIR SINE MIR -110 152 118 1679 177 42 0 chr9 6991407 6991695 -135279749 - AluJb SINE Alu -12 300 1 201 255 0 0 chr9 6991766 6991813 -135279631 - MER5A DNA MER1_type 0 189 143 253 317 67 29 chr9 6991854 6991873 -135279571 - L1MC4 LINE L1 -1 8041 8024 1894 155 3 20 chr9 6991873 6992170 -135279274 + AluJb SINE Alu 1 292 -20 253 317 67 29 chr9 6992170 6992358 -135279086 - L1MC4 LINE L1 -18 8024 7826 404 202 1 0 chr9 6992400 6992482 -135278962 - L1ME2 LINE L1 -22 6140 6058 243 304 89 0 chr9 6992599 6992711 -135278733 + MER5A DNA MER1_type 43 164 -25 243 282 39 13 chr9 6992643 6992721 -135278723 - MER5A DNA MER1_type -85 104 25 251 109 43 0 chr9 6992916 6992962 -135278482 - L2 LINE L2 -2 3311 3264 2053 127 0 3 chr9 6993572 6993855 -135277589 + AluSx SINE Alu 1 282 -30 21 0 0 0 chr9 6993882 6993903 -135277541 + AT_rich Low_complexity Low_complexity 1 21 0 227 132 26 0 chr9 6995211 6995249 -135276195 - Tigger4(Zombi) DNA MER2_type -2646 85 47 743 210 21 0 chr9 6995252 6995395 -135276049 + AluSq/x SINE Alu 2 147 -165 565 143 0 11 chr9 6995395 6995486 -135275958 + AluJb SINE Alu 210 299 -3 1991 136 3 17 chr9 6995917 6996218 -135275226 + AluSx SINE Alu 1 297 -15 2367 85 0 0 chr9 6996336 6996629 -135274815 + AluSc SINE Alu 1 293 -16 1800 138 14 18 chr9 6996629 6996912 -135274532 - AluJb SINE Alu -28 284 3 1954 167 3 3 chr9 6996980 6997286 -135274158 + AluJb SINE Alu 1 306 -6 1381 185 8 0 chr9 6997426 6997664 -135273780 + AluJo SINE Alu 56 295 -17 210 239 120 35 chr9 6999298 6999440 -135272004 + L2 LINE L2 2725 2878 -436 2321 117 0 0 chr9 6999762 7000071 -135271373 + AluSx SINE Alu 1 309 -3 255 273 112 25 chr9 7001304 7001465 -135269979 - MER5B DNA MER1_type 0 178 4 1973 128 3 72 chr9 7004904 7005239 -135266205 + AluSx SINE Alu 1 312 0 183 218 109 0 chr9 7005372 7005427 -135266017 - MIR SINE MIR -61 147 87 2264 121 0 3 chr9 7005928 7006241 -135265203 + AluSx SINE Alu 1 312 0 1584 94 49 8 chr9 7006475 7006720 -135264724 + L1MA5A LINE L1 6040 6294 -3 2359 94 0 3 chr9 7006731 7007038 -135264406 + AluSc SINE Alu 1 306 -3 2378 100 0 0 chr9 7008650 7008959 -135262485 + AluSq SINE Alu 1 309 -4 2107 96 55 17 chr9 7008968 7009260 -135262184 + AluSg SINE Alu 1 303 -7 22 0 0 0 chr9 7010054 7010076 -135261368 + AT_rich Low_complexity Low_complexity 1 22 0 2064 187 85 13 chr9 7010153 7010624 -135260820 + MLT1D LTR MaLR 1 505 0 2071 139 0 0 chr9 7010785 7011079 -135260365 + AluSx SINE Alu 1 294 -18 184 290 48 0 chr9 7011565 7011627 -135259817 + MIR SINE MIR 193 257 -5 2236 104 0 3 chr9 7011987 7012276 -135259168 - AluSx SINE Alu -21 291 4 183 255 106 43 chr9 7013140 7013234 -135258210 + L2 LINE L2 3173 3272 0 368 242 53 11 chr9 7013272 7013367 -135258077 + FRAM SINE Alu 1 99 -67 2359 97 0 7 chr9 7013382 7013682 -135257762 + AluSx SINE Alu 1 298 -14 238 232 91 40 chr9 7014320 7014419 -135257025 - L2 LINE L2 0 3313 3210 22 35 0 0 chr9 7017960 7017989 -135253455 + AT_rich Low_complexity Low_complexity 1 29 0 1803 165 17 3 chr9 7018900 7019197 -135252247 - AluJb SINE Alu -11 301 1 471 306 97 26 chr9 7021062 7021341 -135250103 + L2 LINE L2 2776 3082 -231 650 188 20 0 chr9 7021366 7021467 -135249977 - FLAM_A SINE Alu -28 114 12 279 269 185 0 chr9 7021468 7021598 -135249846 + L2 LINE L2 3113 3266 -47 1861 140 3 7 chr9 7021878 7022187 -135249257 - AluSx SINE Alu 0 308 1 23 33 0 0 chr9 7022198 7022228 -135249216 + AT_rich Low_complexity Low_complexity 1 30 0 2498 71 0 0 chr9 7022907 7023216 -135248228 - AluY SINE Alu -2 309 1 779 186 76 0 chr9 7023249 7023421 -135248023 - L1MA4 LINE L1 -6 6294 6110 180 219 0 0 chr9 7024160 7024201 -135247243 + (TA)n Simple_repeat Simple_repeat 2 42 0 1836 160 7 3 chr9 7024201 7024488 -135246956 - AluSx SINE Alu -24 288 1 240 299 43 43 chr9 7024667 7024784 -135246660 - MIR SINE MIR -116 146 30 1901 122 3 24 chr9 7026109 7026405 -135245039 - AluSq SINE Alu -23 290 1 2825 220 73 19 chr9 7026405 7027437 -135244007 - L1MDa LINE L1 -4399 2141 901 321 278 179 77 chr9 7027731 7027965 -135243479 - L1MDa LINE L1 -6129 411 154 1991 120 0 11 chr9 7028130 7028441 -135243003 - AluSc SINE Alu 0 308 1 2031 118 54 0 chr9 7028692 7028988 -135242456 + AluSq SINE Alu 1 312 -1 10082 46 2 11 chr9 7029323 7031291 -135240153 - L1PA5 LINE L1 -1 6153 4197 1643 131 14 137 chr9 7031517 7031731 -135239713 - AluYb8 SINE Alu 0 308 152 2410 60 10 7 chr9 7031731 7032031 -135239413 - AluY SINE Alu -10 301 1 1643 131 14 137 chr9 7032031 7032167 -135239277 - AluYb8 SINE Alu -156 152 1 531 253 145 60 chr9 7032189 7032924 -135238520 - L1MEd LINE L1 -839 1651 754 2061 112 4 0 chr9 7033379 7033675 -135237769 - AluSg SINE Alu 0 299 3 331 280 60 0 chr9 7034041 7034141 -135237303 - MIR SINE MIR -108 154 49 802 137 8 8 chr9 7034273 7034404 -135237040 + FLAM_C SINE Alu 1 131 -12 1977 110 0 55 chr9 7034518 7034872 -135236572 - AluSx SINE Alu 0 312 1 2165 79 3 60 chr9 7034883 7035200 -135236244 - AluY SINE Alu -12 299 1 1615 197 14 0 chr9 7035425 7035709 -135235735 + AluJb SINE Alu 9 296 -16 1464 93 67 44 chr9 7036650 7036772 -135234672 + MER30 DNA MER1_type 1 132 -98 2131 127 0 3 chr9 7036772 7037072 -135234372 - AluSx SINE Alu -13 299 1 1464 93 67 44 chr9 7037072 7037174 -135234270 + MER30 DNA MER1_type 132 230 0 2236 123 0 0 chr9 7037801 7038102 -135233342 - AluSx SINE Alu -11 301 1 400 187 44 0 chr9 7038965 7039056 -135232388 + L1MB4 LINE L1 6081 6175 -5 429 100 50 10 chr9 7039123 7039223 -135232221 + (TA)n Simple_repeat Simple_repeat 2 105 0 2160 122 7 0 chr9 7039391 7039694 -135231750 - AluSx SINE Alu -7 305 1 2360 106 0 3 chr9 7039705 7040017 -135231427 - AluSx SINE Alu -1 311 1 324 228 0 0 chr9 7040018 7040075 -135231369 - MLT1A2 LTR MaLR -317 57 1 236 261 100 39 chr9 7040807 7040937 -135230507 - HAL1b LINE L1 -8 1340 1203 255 288 45 0 chr9 7041063 7041174 -135230270 - L1 LINE L1 -2990 3156 3041 1154 180 48 0 chr9 7041174 7041380 -135230064 - AluJo SINE Alu -10 302 87 301 125 42 0 chr9 7041380 7041428 -135230016 - Alu SINE Alu -8 294 245 312 312 71 7 chr9 7041539 7041680 -135229764 - L1M4 LINE L1 -2932 3214 3065 763 180 47 0 chr9 7041872 7042000 -135229444 - AluJo SINE Alu -176 136 3 3388 141 37 8 chr9 7042594 7043104 -135228340 + LTR45 LTR ERV1 1 525 0 258 322 76 64 chr9 7043361 7043532 -135227912 + LTR16C LTR ERVL 78 250 -241 885 272 35 31 chr9 7043537 7043827 -135227617 + LTR16C LTR ERVL 201 491 0 5114 157 14 34 chr9 7044192 7044283 -135227161 + L1MB3 LINE L1 5173 5264 -919 2211 122 3 0 chr9 7044283 7044587 -135226857 + AluSx SINE Alu 1 305 -7 2078 116 0 7 chr9 7044587 7044880 -135226564 + AluSx SINE Alu 1 292 -20 5114 157 14 34 chr9 7044880 7044897 -135226547 + L1MB3 LINE L1 5263 5279 -904 2531 53 0 0 chr9 7044897 7045196 -135226248 + AluY SINE Alu 1 299 -12 5114 157 14 34 chr9 7045196 7045742 -135225702 + L1MB3 LINE L1 5279 5807 -376 1737 179 0 3 chr9 7045742 7046039 -135225405 + AluJb SINE Alu 1 296 -16 5114 157 14 34 chr9 7046039 7046407 -135225037 + L1MB3 LINE L1 5807 6181 -2 695 145 36 114 chr9 7047327 7047520 -135223924 - MER5B DNA MER1_type 0 178 1 259 208 14 69 chr9 7047999 7048071 -135223373 - MER5A DNA MER1_type -113 76 9 366 85 0 0 chr9 7048182 7048241 -135223203 + (TATG)n Simple_repeat Simple_repeat 2 60 0 479 196 101 101 chr9 7048299 7048363 -135223081 - MER5A DNA MER1_type 0 189 126 2388 93 3 0 chr9 7048363 7048675 -135222769 + AluSp SINE Alu 1 313 0 479 196 101 101 chr9 7048675 7048799 -135222645 - MER5A DNA MER1_type -62 127 1 202 276 207 11 chr9 7048819 7048906 -135222538 - MIR SINE MIR -68 140 37 680 277 62 56 chr9 7048979 7049468 -135221976 + MLT1G1 LTR MaLR 1 549 0 208 269 0 0 chr9 7049668 7049720 -135221724 + (TAA)n Simple_repeat Simple_repeat 3 54 0 567 252 49 0 chr9 7049723 7049866 -135221578 - MIR SINE MIR -29 233 84 595 208 8 54 chr9 7050032 7050162 -135221282 + FLAM_A SINE Alu 1 124 -9 29 0 0 0 chr9 7050519 7050548 -135220896 + AT_rich Low_complexity Low_complexity 1 29 0 267 31 0 0 chr9 7051757 7051789 -135219655 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 1703 166 18 3 chr9 7051792 7052076 -135219368 - AluJb SINE Alu -24 288 1 2435 78 0 10 chr9 7052365 7052673 -135218771 - AluSq SINE Alu -8 305 1 232 122 73 0 chr9 7053183 7053224 -135218220 + MER57A LTR ERV1 295 338 -65 1586 205 3 10 chr9 7053245 7053548 -135217896 + AluJb SINE Alu 5 305 -7 2209 97 10 0 chr9 7053616 7053916 -135217528 - AluY SINE Alu -8 303 1 22 35 0 0 chr9 7053974 7054003 -135217441 + AT_rich Low_complexity Low_complexity 1 29 0 755 168 0 8 chr9 7054003 7054122 -135217322 - FLAM_C SINE Alu -15 118 1 4080 173 43 8 chr9 7054180 7054932 -135216512 - L1MB7 LINE L1 -16 6168 5391 797 176 0 0 chr9 7054972 7055103 -135216341 - FLAM_C SINE Alu -3 140 10 750 199 27 20 chr9 7055742 7055888 -135215556 - FRAM SINE Alu -30 146 1 661 153 6 6 chr9 7056715 7056878 -135214566 + CT-rich Low_complexity Low_complexity 3 165 0 1919 148 4 0 chr9 7056879 7057157 -135214287 - AluSx SINE Alu -33 279 1 254 253 99 49 chr9 7057267 7057429 -135214015 + L1MC/D LINE L1 5309 5478 -2330 699 209 16 0 chr9 7057447 7057576 -135213868 + FLAM_A SINE Alu 1 131 -2 2308 113 0 0 chr9 7057578 7057879 -135213565 + AluSx SINE Alu 1 301 -11 1616 188 7 36 chr9 7057969 7058273 -135213171 + AluJo SINE Alu 1 295 -17 27 0 0 0 chr9 7058275 7058302 -135213142 + AT_rich Low_complexity Low_complexity 1 27 0 2176 116 3 22 chr9 7059680 7059999 -135211445 + AluSp SINE Alu 1 313 0 1647 177 10 35 chr9 7060333 7060644 -135210800 + AluJo SINE Alu 1 303 -9 1790 169 23 10 chr9 7060644 7060951 -135210493 + AluSx SINE Alu 1 312 0 2231 117 0 0 chr9 7061141 7061440 -135210004 + AluSg SINE Alu 1 299 -11 1597 178 0 21 chr9 7061893 7062179 -135209265 - AluJb SINE Alu -32 280 1 216 97 0 0 chr9 7062268 7062299 -135209145 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 2094 80 88 0 chr9 7062626 7062900 -135208544 - AluSx SINE Alu -13 299 2 270 244 178 39 chr9 7063096 7063194 -135208250 - MER2 DNA MER2_type -16 329 246 2289 118 0 0 chr9 7063194 7063500 -135207944 + AluSx SINE Alu 1 306 -6 270 244 178 39 chr9 7063500 7063581 -135207863 - MER2 DNA MER2_type -99 246 125 857 186 48 14 chr9 7063583 7063728 -135207716 + AluJb SINE Alu 2 151 -161 344 164 14 82 chr9 7063721 7063781 -135207663 + AluS SINE Alu 223 279 -23 * 244 0 0 0 chr9 7063781 7063808 -135207636 + (TAAA)n Simple_repeat Simple_repeat 2 144 0 344 164 14 82 chr9 7063808 7063820 -135207624 + AluS SINE Alu 279 290 -12 2204 120 3 0 chr9 7063967 7064276 -135207168 - AluSg SINE Alu 0 310 1 201 74 0 0 chr9 7064277 7064304 -135207140 + (TTTTC)n Simple_repeat Simple_repeat 2 28 0 298 170 0 0 chr9 7065161 7065208 -135206236 - L2 LINE L2 0 3313 3267 2246 77 0 10 chr9 7066274 7066587 -135204857 + AluY SINE Alu 1 310 -1 1958 87 37 24 chr9 7067039 7067337 -135204107 + AluSq SINE Alu 1 302 -11 1923 114 4 0 chr9 7067549 7067869 -135203575 + AluSx SINE Alu 1 321 0 907 158 0 74 chr9 7067873 7068075 -135203369 - AluJb SINE Alu -2 310 124 1710 168 21 0 chr9 7068089 7068375 -135203069 + AluJb SINE Alu 1 292 -20 2274 72 0 28 chr9 7068380 7068700 -135202744 + AluY SINE Alu 1 311 0 2177 59 0 21 chr9 7068707 7069046 -135202398 + AluY SINE Alu 1 333 0 331 224 0 0 chr9 7069459 7069526 -135201918 + L1ME LINE L1 5619 5685 -436 845 75 17 0 chr9 7069643 7069763 -135201681 + AluSp/q SINE Alu 181 302 -11 1381 96 0 10 chr9 7069763 7069960 -135201484 + AluY SINE Alu 1 195 -116 642 0 0 0 chr9 7069960 7070031 -135201413 + AluY SINE Alu 62 132 -179 1956 115 0 3 chr9 7070035 7070331 -135201113 + AluY SINE Alu 1 295 -16 2345 34 7 17 chr9 7070337 7070665 -135200779 + AluY SINE Alu 1 311 0 373 200 44 11 chr9 7071248 7071338 -135200106 - MIR SINE MIR -121 141 49 1587 169 0 44 chr9 7071472 7071791 -135199653 + AluJb SINE Alu 1 305 -7 826 224 0 0 chr9 7071842 7072007 -135199437 + FRAM SINE Alu 1 164 -12 1818 99 4 4 chr9 7072009 7072272 -135199172 + AluSq SINE Alu 1 263 -50 2113 104 0 3 chr9 7072718 7073016 -135198428 - AluSx SINE Alu -15 297 1 525 220 135 21 chr9 7073016 7073157 -135198287 - FRAM SINE Alu -13 163 7 1973 259 96 31 chr9 7073173 7073441 -135198003 + L2 LINE L2 2005 2254 -1060 2045 129 0 0 chr9 7073441 7073752 -135197692 - AluY SINE Alu 0 311 1 1973 259 96 31 chr9 7073752 7074246 -135197198 + L2 LINE L2 2254 2816 -498 597 244 65 57 chr9 7074251 7074481 -135196963 - LTR33 LTR ERVL -2 519 288 273 193 0 0 chr9 7074589 7074646 -135196798 + Alu SINE Alu 245 301 -1 195 42 0 0 chr9 7074900 7074924 -135196520 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1973 131 3 3 chr9 7075078 7075375 -135196069 - AluSp SINE Alu -16 297 1 2340 81 0 7 chr9 7075375 7075682 -135195762 - AluSx SINE Alu -7 305 1 474 18 0 0 chr9 7075688 7075743 -135195701 + (TTA)n Simple_repeat Simple_repeat 2 56 0 1872 101 4 0 chr9 7075747 7076004 -135195440 - AluSx SINE Alu -32 280 23 1853 136 3 7 chr9 7076012 7076327 -135195117 - AluSx SINE Alu 0 314 1 2161 84 3 0 chr9 7076859 7077178 -135194266 - AluSx SINE Alu 0 320 1 1319 209 17 24 chr9 7077186 7077482 -135193962 - AluJo SINE Alu -18 294 1 966 201 14 5 chr9 7077490 7077699 -135193745 - AluJb SINE Alu 0 312 102 565 147 147 0 chr9 7077699 7077801 -135193643 + FLAM_C SINE Alu 1 117 -26 1882 154 0 3 chr9 7077814 7078125 -135193319 - AluJb SINE Alu -2 310 1 606 213 12 50 chr9 7078302 7078453 -135192991 + AluJb SINE Alu 157 303 -9 1691 169 23 10 chr9 7078453 7078761 -135192683 + AluSx SINE Alu 1 312 0 2276 93 0 0 chr9 7078951 7079253 -135192191 + AluSg1 SINE Alu 1 302 -7 484 240 260 24 chr9 7079253 7079461 -135191983 + Zaphod DNA AcHobo 383 639 -3392 2191 99 3 3 chr9 7079461 7079763 -135191681 + AluSx SINE Alu 1 302 -10 1304 53 0 6 chr9 7079818 7079987 -135191457 + AluY SINE Alu 136 303 -8 252 231 15 0 chr9 7080009 7080074 -135191370 + Zaphod DNA AcHobo 663 728 -3303 1988 119 10 0 chr9 7080074 7080369 -135191075 + AluSx SINE Alu 1 298 -14 2189 179 87 50 chr9 7080378 7080837 -135190607 + MER21A LTR ERV1 386 861 -70 986 186 6 0 chr9 7080837 7081020 -135190424 - AluSg/x SINE Alu -8 304 121 569 168 71 9 chr9 7081296 7081409 -135190035 + FLAM_C SINE Alu 12 131 -12 23 0 0 0 chr9 7081438 7081461 -135189983 + AT_rich Low_complexity Low_complexity 1 23 0 2089 109 0 7 chr9 7081465 7081759 -135189685 - AluSc SINE Alu -17 292 1 2252 74 0 0 chr9 7081764 7082072 -135189372 - AluY SINE Alu 0 308 1 893 186 47 131 chr9 7082078 7082438 -135189006 + MER34C LTR ERV1 256 585 0 1950 128 3 7 chr9 7082557 7082854 -135188590 - AluSx SINE Alu -16 296 1 2404 70 3 0 chr9 7083944 7084246 -135187198 - AluSx SINE Alu -9 303 1 207 0 0 0 chr9 7084258 7084281 -135187163 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2037 105 7 0 chr9 7084458 7084744 -135186700 - AluSg SINE Alu -21 289 2 2034 111 0 26 chr9 7084949 7085255 -135186189 - AluSx SINE Alu -14 298 1 23 33 0 0 chr9 7085961 7085991 -135185453 + AT_rich Low_complexity Low_complexity 1 30 0 1223 167 77 42 chr9 7086198 7086485 -135184959 + AluJo SINE Alu 1 297 -15 1818 142 10 10 chr9 7086505 7086801 -135184643 - AluSx SINE Alu -16 296 1 870 229 0 0 chr9 7086811 7086986 -135184458 - FAM SINE Alu 0 175 1 1140 107 6 0 chr9 7089234 7089393 -135182051 - AluSp SINE Alu -51 262 103 195 42 0 0 chr9 7089852 7089876 -135181568 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 2131 105 13 0 chr9 7089880 7090186 -135181258 - AluSx SINE Alu -2 310 1 1675 179 3 3 chr9 7090742 7091054 -135180390 + AluJo SINE Alu 1 312 0 2181 105 0 3 chr9 7091384 7091689 -135179755 - AluSx SINE Alu -4 308 5 902 282 49 8 chr9 7092202 7092447 -135178997 - MIR SINE MIR 0 262 8 227 280 28 28 chr9 7092979 7093086 -135178358 + L1ME4a LINE L1 5967 6073 -48 2371 178 93 8 chr9 7093726 7094232 -135177212 - MER89 LTR ERV1 -10 549 1 261 0 0 0 chr9 7094252 7094281 -135177163 + (TA)n Simple_repeat Simple_repeat 1 29 0 208 232 131 50 chr9 7094886 7094929 -135176515 - L2 LINE L2 -15 3298 3260 2239 99 0 0 chr9 7094929 7095223 -135176221 - AluSg SINE Alu -14 296 3 208 232 131 50 chr9 7095223 7095278 -135176166 - L2 LINE L2 -53 3260 3192 2100 102 9 19 chr9 7095439 7095754 -135175690 + AluSx SINE Alu 1 312 0 2190 99 0 13 chr9 7096161 7096475 -135174969 + AluSg SINE Alu 1 310 0 2109 92 0 0 chr9 7096745 7097026 -135174418 + AluSx SINE Alu 1 281 -31 1611 171 3 13 chr9 7098194 7098493 -135172951 + AluSx SINE Alu 10 305 -7 2276 85 0 0 chr9 7098821 7099115 -135172329 - AluSg SINE Alu -16 294 1 372 22 0 0 chr9 7099446 7099491 -135171953 + (CA)n Simple_repeat Simple_repeat 1 45 0 195 42 0 0 chr9 7099539 7099563 -135171881 + (CCCCCT)n Simple_repeat Simple_repeat 2 25 0 10861 28 20 31 chr9 7099568 7100931 -135170513 + SVA Other Other 38 1385 -1 1856 199 97 21 chr9 7101493 7101924 -135169520 + MLT1C LTR MaLR 1 464 -3 2129 99 0 3 chr9 7102008 7102301 -135169143 + AluSx SINE Alu 5 296 -16 2428 60 0 3 chr9 7104312 7104613 -135166831 + AluY SINE Alu 1 300 -11 747 114 21 6 chr9 7105806 7106051 -135165393 + AluJ SINE Alu 1 294 -18 1927 75 20 0 chr9 7106520 7106774 -135164670 - AluSq SINE Alu -16 297 39 25 0 0 0 chr9 7107100 7107125 -135164319 + AT_rich Low_complexity Low_complexity 1 25 0 207 0 0 0 chr9 7107226 7107249 -135164195 + (TA)n Simple_repeat Simple_repeat 2 24 0 908 132 0 22 chr9 7107251 7107387 -135164057 - FLAM_C SINE Alu 0 133 1 969 91 0 0 chr9 7107457 7107589 -135163855 + AluY SINE Alu 173 304 -7 1442 156 31 28 chr9 7109082 7109371 -135162073 + AluJo SINE Alu 1 290 -22 187 355 106 23 chr9 7110589 7110854 -135160590 + L2 LINE L2 2140 2426 -888 271 261 0 0 chr9 7110872 7110937 -135160507 + LTR16B LTR ERVL 54 118 -346 435 193 45 0 chr9 7110939 7111027 -135160417 + AluS SINE Alu 2 93 -220 631 167 135 26 chr9 7111031 7111187 -135160257 + L1ME3A LINE L1 5693 5865 -305 464 154 0 0 chr9 7112472 7112537 -135158907 - HERVL18 LTR ERVL -3265 2782 2718 * 1206 155 64 2 chr9 7112534 7112794 -135158650 - HERVL18 LTR ERVL -3595 2452 2119 2728 196 14 26 chr9 7112819 7113698 -135157746 - HERVL18 LTR ERVL -4425 1622 56 1205 135 5 25 chr9 7113799 7113999 -135157445 - AluSx SINE Alu -116 196 1 1822 95 91 18 chr9 7114712 7114986 -135156458 + AluSc SINE Alu 2 295 -14 2247 101 13 7 chr9 7116174 7116480 -135154964 - AluSx SINE Alu 0 312 5 1482 197 4 4 chr9 7117038 7117317 -135154127 + AluJo SINE Alu 1 279 -33 360 259 2 0 chr9 7117530 7117620 -135153824 - AluJ/FLAM SINE Alu -227 75 1 2452 86 3 0 chr9 7117737 7118038 -135153406 + AluSp SINE Alu 1 302 -11 1195 38 0 0 chr9 7118038 7118170 -135153274 + AluY SINE Alu 1 132 -179 2363 71 0 7 chr9 7118174 7118471 -135152973 + AluY SINE Alu 1 295 -16 2230 42 46 18 chr9 7118471 7118788 -135152656 + AluY SINE Alu 1 311 0 372 200 44 11 chr9 7119371 7119461 -135151983 - MIR SINE MIR -121 141 49 1785 163 0 44 chr9 7119595 7119914 -135151530 + AluJb SINE Alu 1 305 -7 927 218 0 0 chr9 7119965 7120130 -135151314 + FRAM SINE Alu 1 164 -12 353 64 0 0 chr9 7120132 7120179 -135151265 + Alu SINE Alu 1 47 -255 1560 179 14 7 chr9 7120413 7120703 -135150741 + AluSx SINE Alu 21 312 0 195 42 0 0 chr9 7120706 7120730 -135150714 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 22 35 0 0 chr9 7122087 7122116 -135149328 + GC_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr9 7122457 7122480 -135148964 + AT_rich Low_complexity Low_complexity 1 23 0 1120 90 0 0 chr9 7123391 7123525 -135147919 + AluSq/x SINE Alu 1 134 -178 1455 127 5 9 chr9 7123527 7123740 -135147704 + AluSp SINE Alu 1 212 -101 483 240 202 8 chr9 7123756 7123885 -135147559 - AluJo SINE Alu -38 274 121 524 44 15 0 chr9 7123885 7123953 -135147491 - L1PA8 LINE L1 -319 5853 5785 1966 166 44 70 chr9 7123954 7124272 -135147172 - Tigger7 DNA MER2_type -2062 425 119 2402 89 10 0 chr9 7124272 7124576 -135146868 + AluSp SINE Alu 1 307 -6 1966 166 44 70 chr9 7124576 7124685 -135146759 - Tigger7 DNA MER2_type -2368 119 9 366 310 84 0 chr9 7124709 7124864 -135146580 - L1MCb LINE L1 -5308 737 570 459 286 34 7 chr9 7124956 7125103 -135146341 - L1MCb LINE L1 -5471 574 424 264 176 0 44 chr9 7125105 7125173 -135146271 - L1MCb LINE L1 -5772 273 209 2090 134 0 0 chr9 7125204 7125495 -135145949 - AluSx SINE Alu -8 304 14 404 182 0 0 chr9 7125500 7125577 -135145867 - AluJ/FRAM SINE Alu -7 305 229 684 61 0 0 chr9 7125677 7125759 -135145685 - AluY SINE Alu -228 83 2 * 757 164 16 0 chr9 7125759 7125878 -135145566 + AluSg/x SINE Alu 183 303 -9 1684 162 4 0 chr9 7125893 7126197 -135145247 + AluJb SINE Alu 16 320 0 891 280 15 19 chr9 7126202 7126470 -135144974 + LTR16B LTR ERVL 109 375 -89 181 347 27 0 chr9 7126651 7126726 -135144718 + L2 LINE L2 2872 2948 -324 409 256 0 0 chr9 7127130 7127216 -135144228 + FRAM SINE Alu 77 162 -14 1453 226 7 13 chr9 7127222 7127532 -135143912 + AluJb SINE Alu 3 310 -2 1348 151 29 59 chr9 7127555 7127652 -135143792 + L1MC1 LINE L1 6059 6157 -176 2203 115 7 3 chr9 7127652 7127947 -135143497 + AluSx SINE Alu 1 296 -16 1348 151 29 59 chr9 7127947 7128121 -135143323 + L1MC1 LINE L1 6157 6322 -11 1926 150 10 10 chr9 7128122 7128422 -135143022 + AluJo SINE Alu 1 300 -12 2119 110 0 0 chr9 7128433 7128706 -135142738 + AluSx SINE Alu 3 275 -37 2025 97 6 61 chr9 7128736 7129047 -135142397 + AluSq SINE Alu 3 296 -17 1948 144 6 52 chr9 7129069 7129395 -135142049 - AluSx SINE Alu -1 311 1 725 124 66 25 chr9 7129483 7129604 -135141840 - FLAM_C SINE Alu -4 139 14 1985 153 3 16 chr9 7130083 7130396 -135141048 + AluSx SINE Alu 1 309 -3 1012 207 195 0 chr9 7130726 7130987 -135140457 + MER21B LTR ERV1 1 312 -551 1122 82 0 0 chr9 7130988 7131123 -135140321 + AluSq/x SINE Alu 1 135 -177 2441 77 0 0 chr9 7131123 7131423 -135140021 + AluY SINE Alu 1 300 -11 2226 168 85 78 chr9 7131429 7131888 -135139556 + MER21A LTR ERV1 386 851 -80 1979 148 3 23 chr9 7131888 7132198 -135139246 - AluSx SINE Alu -8 304 1 2226 168 85 78 chr9 7132198 7132280 -135139164 + MER21A LTR ERV1 851 931 0 2157 68 79 7 chr9 7132442 7132722 -135138722 - AluSp SINE Alu -13 300 1 2293 109 0 0 chr9 7132821 7133115 -135138329 - AluSg SINE Alu -15 295 2 194 125 0 25 chr9 7133166 7133206 -135138238 + (GAAAA)n Simple_repeat Simple_repeat 4 42 0 2058 117 11 3 chr9 7133281 7133590 -135137854 + AluSx SINE Alu 1 311 0 388 174 315 0 chr9 7133656 7133748 -135137696 + FLAM_A SINE Alu 1 121 -12 37 0 0 0 chr9 7133969 7134006 -135137438 + AT_rich Low_complexity Low_complexity 1 37 0 888 206 11 29 chr9 7134006 7134145 -135137299 + AluJo SINE Alu 1 138 -174 2479 78 0 0 chr9 7134145 7134440 -135137004 + AluSx SINE Alu 1 295 -17 888 206 11 29 chr9 7134440 7134475 -135136969 + AluJo SINE Alu 138 172 -140 253 200 55 0 chr9 7134483 7134538 -135136906 + FAM SINE Alu 116 173 -2 2182 125 0 0 chr9 7134540 7134837 -135136607 + AluSx SINE Alu 2 298 -14 827 135 0 8 chr9 7134838 7135006 -135136438 + FLAM_C SINE Alu 1 167 0 817 303 135 53 chr9 7135199 7135538 -135135906 + ERVL LTR ERVL 884 1194 -4460 1941 135 36 30 chr9 7135538 7135842 -135135602 + AluJb SINE Alu 3 308 -4 817 303 135 53 chr9 7135842 7136416 -135135028 + ERVL LTR ERVL 1194 1827 -3827 628 139 0 0 chr9 7136537 7136638 -135134806 + AluSg/x SINE Alu 209 309 0 271 163 24 0 chr9 7136638 7136694 -135134750 + AluY SINE Alu 142 188 -113 768 149 8 22 chr9 7136744 7136878 -135134566 - FLAM_C SINE Alu 0 133 2 2249 115 0 0 chr9 7136887 7137183 -135134261 - AluSq SINE Alu -16 297 2 2495 61 3 0 chr9 7137241 7137534 -135133910 - AluY SINE Alu -17 294 1 886 202 60 101 chr9 7137536 7137902 -135133542 + MER34C LTR ERV1 235 585 0 2144 118 3 7 chr9 7138021 7138317 -135133127 - AluSx SINE Alu -17 295 1 2395 86 3 0 chr9 7139406 7139707 -135131737 - AluSx SINE Alu -10 302 1 207 0 0 0 chr9 7139719 7139742 -135131702 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2175 105 7 0 chr9 7139919 7140205 -135131239 - AluSg SINE Alu -21 289 2 2204 108 0 23 chr9 7140410 7140715 -135130729 - AluSx SINE Alu -14 298 1 264 254 228 9 chr9 7141385 7141499 -135129945 + MIR SINE MIR 82 220 -42 387 60 0 0 chr9 7141544 7141594 -135129850 + (TCC)n Simple_repeat Simple_repeat 2 51 0 1903 139 21 0 chr9 7141634 7141922 -135129522 + AluJb SINE Alu 8 301 -11 1404 14 0 0 chr9 7142074 7142222 -135129222 - AluY SINE Alu -163 148 1 779 251 67 110 chr9 7142725 7142824 -135128620 + MLT1H LTR MaLR 52 154 -395 1946 147 0 0 chr9 7142824 7143110 -135128334 - AluJb SINE Alu -26 286 1 779 251 67 110 chr9 7143110 7143519 -135127925 + MLT1H LTR MaLR 154 538 -11 2279 122 0 0 chr9 7143820 7144115 -135127329 - AluSg SINE Alu -15 295 1 2351 107 3 0 chr9 7144260 7144569 -135126875 - AluSq SINE Alu -3 310 1 1447 150 0 26 chr9 7144577 7144804 -135126640 - AluJo SINE Alu -1 311 91 2193 131 3 0 chr9 7144955 7145260 -135126184 + AluSp SINE Alu 1 306 -7 183 42 0 0 chr9 7145722 7145746 -135125698 + (TAA)n Simple_repeat Simple_repeat 1 24 0 2504 74 3 0 chr9 7145749 7146048 -135125396 - AluSp SINE Alu -13 300 1 1849 146 41 7 chr9 7146056 7146378 -135125066 - AluSx SINE Alu 0 312 1 528 248 101 50 chr9 7146548 7146711 -135124733 + Charlie1 DNA MER1_type 37 213 -2548 2304 81 27 3 chr9 7146711 7147008 -135124436 - AluY SINE Alu -7 304 1 528 248 101 50 chr9 7147008 7147042 -135124402 + Charlie1 DNA MER1_type 213 244 -2517 234 0 0 0 chr9 7147045 7147071 -135124373 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 1726 186 0 24 chr9 7147074 7147240 -135124204 - AluJb SINE Alu -23 289 132 2659 36 13 0 chr9 7147240 7147547 -135123897 - AluY SINE Alu 0 311 1 1726 186 0 24 chr9 7147547 7147676 -135123768 - AluJb SINE Alu -180 132 1 2619 39 3 7 chr9 7147705 7148011 -135123433 + AluY SINE Alu 1 305 -6 2094 113 13 17 chr9 7148033 7148169 -135123275 + AluSx SINE Alu 1 136 -176 2295 106 13 0 chr9 7148169 7148471 -135122973 + AluSp SINE Alu 2 307 -6 2094 113 13 17 chr9 7148471 7148634 -135122810 + AluSx SINE Alu 136 299 -13 188 135 27 0 chr9 7148634 7148671 -135122773 + (TATAA)n Simple_repeat Simple_repeat 1 38 0 1522 171 75 0 chr9 7148676 7148957 -135122487 - AluJo SINE Alu 0 302 1 216 111 0 0 chr9 7149273 7149309 -135122135 + (GGA)n Simple_repeat Simple_repeat 3 38 0 702 197 15 29 chr9 7149580 7149717 -135121727 + AluJo SINE Alu 2 136 -176 2361 103 0 3 chr9 7149729 7150029 -135121415 - AluSc SINE Alu -9 300 2 875 168 0 0 chr9 7150226 7150357 -135121087 + FLAM_C SINE Alu 1 131 -2 2017 147 7 3 chr9 7150467 7150774 -135120670 + AluSx SINE Alu 1 308 -4 186 398 21 0 chr9 7150881 7150974 -135120470 - L2 LINE L2 0 3272 3178 886 129 0 0 chr9 7151247 7151371 -135120073 - AluSg/x SINE Alu -14 296 173 306 177 0 0 chr9 7151530 7151592 -135119852 + AluS SINE Alu 233 294 -8 466 218 44 87 chr9 7151606 7151812 -135119632 + L1MDa LINE L1 1471 1667 -4873 229 195 0 0 chr9 7151812 7151853 -135119591 + MER57A LTR ERV1 296 336 -67 236 286 109 0 chr9 7151864 7151983 -135119461 + L1MDa LINE L1 1638 1769 -4771 737 95 0 0 chr9 7151987 7152082 -135119362 + AluSg SINE Alu 28 122 -188 1725 109 0 0 chr9 7152082 7152311 -135119133 + AluSg/x SINE Alu 82 310 -2 744 154 0 70 chr9 7152406 7152549 -135118895 + FLAM_C SINE Alu 1 133 0 643 221 49 71 chr9 7152589 7152854 -135118590 + L1MDa LINE L1 1860 2119 -4421 2170 118 3 3 chr9 7152854 7153158 -135118286 - AluSc SINE Alu -5 304 1 643 221 49 71 chr9 7153158 7153200 -135118244 + L1MDa LINE L1 2119 2160 -4380 1768 135 12 0 chr9 7153200 7153445 -135117999 + AluSg SINE Alu 50 297 -13 2216 126 0 0 chr9 7153455 7153756 -135117688 + AluSx SINE Alu 1 301 -11 2400 70 0 0 chr9 7153771 7154079 -135117365 + AluY SINE Alu 1 308 0 2284 116 0 6 chr9 7154084 7154395 -135117049 + AluSc SINE Alu 1 309 0 671 156 57 8 chr9 7154426 7154548 -135116896 - FLAM_C SINE Alu -4 139 12 2075 139 0 0 chr9 7154901 7155196 -135116248 + AluSx SINE Alu 1 295 -17 1510 135 0 91 chr9 7155234 7155389 -135116055 + AluJb SINE Alu 3 120 -192 1434 135 138 67 chr9 7155389 7155671 -135115773 + AluSx SINE Alu 1 302 -10 1510 135 0 91 chr9 7155671 7155812 -135115632 + AluJb SINE Alu 120 272 -40 1976 106 8 0 chr9 7155815 7156079 -135115365 - AluSx SINE Alu -46 266 1 432 0 0 0 chr9 7156090 7156138 -135115306 + (TTTAG)n Simple_repeat Simple_repeat 3 50 0 1973 125 18 4 chr9 7156138 7156419 -135115025 - AluSq SINE Alu -28 285 1 1371 88 39 61 chr9 7156419 7156587 -135114857 - L1P4 LINE L1 -664 5501 5331 2324 117 0 10 chr9 7156587 7156895 -135114549 - AluSq SINE Alu -8 305 1 1371 88 39 61 chr9 7156895 7157104 -135114340 - L1P4 LINE L1 -834 5331 5128 256 162 4 70 chr9 7157123 7157188 -135114256 - AluJo SINE Alu -168 134 83 1933 141 3 3 chr9 7157199 7157503 -135113941 - AluSx SINE Alu -6 306 3 602 228 7 0 chr9 7157510 7157646 -135113798 - L1P LINE L1 -1823 4323 4187 6191 96 3 0 chr9 7157650 7158514 -135112930 - THE1B-int LTR MaLR -712 868 2 2202 132 30 28 chr9 7158515 7158878 -135112566 - THE1B LTR MaLR 0 364 1 670 239 112 10 chr9 7158900 7159105 -135112339 - REP3 LTR ERV -47 515 290 2447 85 3 0 chr9 7159680 7159985 -135111459 + AluSp SINE Alu 1 306 -7 2561 183 48 25 chr9 7159986 7160123 -135111321 - HERVL40 LTR ERVL -1084 1953 1821 4270 77 9 0 chr9 7160123 7160672 -135110772 + MER41A LTR ERV1 1 554 0 2561 183 48 25 chr9 7160672 7161098 -135110346 - HERVL40 LTR ERVL -1216 1821 1377 893 101 52 109 chr9 7161122 7161242 -135110202 + MER57B-int LTR ERV1 632 757 -6010 2283 120 0 0 chr9 7161242 7161543 -135109901 - AluSx SINE Alu -11 301 1 893 101 52 109 chr9 7161543 7161726 -135109718 + MER57B-int LTR ERV1 757 2365 -4402 302 93 0 0 chr9 7161726 7161769 -135109675 + Alu SINE Alu 1 43 -260 599 94 0 62 chr9 7161769 7161865 -135109579 - AluS SINE Alu -222 91 2 2528 74 7 0 chr9 7161879 7162188 -135109256 - AluY SINE Alu 0 311 1 3340 82 144 122 chr9 7162193 7162642 -135108802 + MER57B-int LTR ERV1 6788 7261 -276 2538 63 9 25 chr9 7162642 7162960 -135108484 + AluSp SINE Alu 1 313 0 3340 82 144 122 chr9 7162960 7163240 -135108204 + MER57B-int LTR ERV1 7261 7533 -4 2486 121 24 66 chr9 7163244 7163645 -135107799 + MER57B LTR ERV1 1 382 -52 2519 64 0 0 chr9 7163645 7163940 -135107504 - AluY SINE Alu -16 295 1 2486 121 24 66 chr9 7163940 7163991 -135107453 + MER57B LTR ERV1 382 434 0 1828 181 36 48 chr9 7163991 7164144 -135107300 - HERVL40 LTR ERVL -1693 1344 1191 2176 133 0 0 chr9 7164144 7164446 -135106998 - AluSx SINE Alu -10 302 1 1828 181 36 48 chr9 7164446 7164713 -135106731 - HERVL40 LTR ERVL -1846 1191 929 1739 159 17 23 chr9 7164713 7165015 -135106429 - AluJb SINE Alu -12 300 1 2483 87 0 3 chr9 7165040 7165350 -135106094 - AluSg1 SINE Alu 0 309 1 2321 101 0 3 chr9 7165402 7165709 -135105735 - AluSg SINE Alu -4 306 1 2111 134 13 0 chr9 7165721 7166020 -135105424 - AluSg SINE Alu -7 303 1 678 200 13 13 chr9 7166032 7166182 -135105262 - HERVL40 LTR ERVL -2118 919 770 225 0 0 0 chr9 7166182 7166207 -135105237 + (T)n Simple_repeat Simple_repeat 1 25 0 1002 54 15 0 chr9 7166668 7166798 -135104646 - AluY SINE Alu -179 132 1 2126 121 0 0 chr9 7166798 7167105 -135104339 - AluSq SINE Alu -6 307 1 1989 125 3 0 chr9 7167239 7167527 -135103917 + AluSx SINE Alu 1 289 -23 292 163 0 0 chr9 7167992 7168035 -135103409 + MER57A LTR ERV1 295 337 -66 2043 123 16 7 chr9 7168050 7168359 -135103085 + AluSx SINE Alu 1 312 0 1334 127 0 14 chr9 7168364 7168576 -135102868 + AluSg/x SINE Alu 102 310 0 1360 115 0 14 chr9 7168586 7168794 -135102650 + AluSq SINE Alu 104 308 -5 1409 177 106 40 chr9 7169117 7169439 -135102005 + MLT1D LTR MaLR 163 505 0 2092 92 0 3 chr9 7169445 7169759 -135101685 + AluSc SINE Alu 1 313 0 586 341 70 24 chr9 7169775 7170144 -135101300 - HERVL40 LTR ERVL -2655 2875 2490 269 119 24 0 chr9 7170419 7170461 -135100983 - HERVL40 LTR ERVL -1723 3807 3765 * 485 226 49 0 chr9 7170455 7170557 -135100887 - HERVL40 LTR ERVL -1914 3616 3510 390 56 14 111 chr9 7170623 7170695 -135100749 - Alu SINE Alu 0 301 237 372 331 47 0 chr9 7170739 7170866 -135100578 - HERVL40 LTR ERVL -4314 1216 1084 1913 100 0 4 chr9 7170878 7171148 -135100296 - AluSq SINE Alu -10 303 35 1513 169 0 77 chr9 7171246 7171461 -135099983 - AluJb SINE Alu 0 312 131 2281 85 3 0 chr9 7171461 7171756 -135099688 + AluSp SINE Alu 1 296 -17 1513 169 0 77 chr9 7171756 7171878 -135099566 - AluJb SINE Alu -181 131 1 1349 181 12 116 chr9 7172252 7172386 -135099058 + AluJo SINE Alu 1 147 -155 2228 83 0 3 chr9 7172386 7172687 -135098757 + AluSg SINE Alu 1 300 -10 1928 141 0 26 chr9 7172690 7173002 -135098442 + AluSx SINE Alu 1 304 -8 1349 181 12 116 chr9 7173002 7173200 -135098244 + AluJo SINE Alu 149 302 0 1937 114 3 50 chr9 7173582 7173899 -135097545 + AluSp SINE Alu 1 302 -11 2290 76 3 7 chr9 7173919 7174222 -135097222 + AluSx SINE Alu 1 302 -10 2298 85 7 0 chr9 7174398 7174705 -135096739 + AluSq SINE Alu 1 309 -4 3819 150 49 71 chr9 7175262 7175339 -135096105 - LTR39 LTR ERV1 0 783 706 2028 127 0 0 chr9 7175339 7175638 -135095806 - AluSx SINE Alu -10 302 4 3819 150 49 71 chr9 7175638 7175658 -135095786 - LTR39 LTR ERV1 -77 706 687 1730 153 14 0 chr9 7175658 7175945 -135095499 - AluJb SINE Alu -21 291 1 3819 150 49 71 chr9 7175945 7176647 -135094797 - LTR39 LTR ERV1 -96 687 1 696 144 0 24 chr9 7176688 7176813 -135094631 - FLAM_C SINE Alu -7 126 5 216 200 0 0 chr9 7176819 7176864 -135094580 + CT-rich Low_complexity Low_complexity 4 48 0 2199 88 3 7 chr9 7176881 7177187 -135094257 - AluSp SINE Alu -8 305 1 2013 113 17 3 chr9 7178566 7178866 -135092578 - AluSx SINE Alu -8 304 1 2004 96 0 36 chr9 7178888 7179191 -135092253 - AluSx SINE Alu -20 292 1 411 303 73 12 chr9 7179662 7179827 -135091617 - MIR SINE MIR -3 259 85 222 209 47 0 chr9 7179830 7179873 -135091571 - MIR SINE MIR -151 111 67 647 131 46 39 chr9 7179885 7180015 -135091429 - FLAM_A SINE Alu -2 131 1 304 280 72 32 chr9 7180053 7180131 -135091313 + MIR SINE MIR 17 90 -118 2266 94 0 3 chr9 7180131 7180440 -135091004 - AluSq SINE Alu -5 308 1 1236 172 4 70 chr9 7180441 7180697 -135090747 - MER8 DNA MER2_type 0 239 1 304 280 72 32 chr9 7180697 7180741 -135090703 + MIR SINE MIR 89 146 -62 2091 137 0 3 chr9 7180817 7181130 -135090314 + AluSx SINE Alu 1 312 0 2201 95 3 7 chr9 7181565 7181869 -135089575 - AluSc SINE Alu -6 303 1 1861 106 71 3 chr9 7182207 7182490 -135088954 - AluSx SINE Alu -10 302 1 300 224 83 68 chr9 7182996 7183188 -135088256 - L1MC5 LINE L1 -196 7765 7571 27 0 0 0 chr9 7183188 7183215 -135088229 + AT_rich Low_complexity Low_complexity 1 27 0 1689 146 4 7 chr9 7183247 7183527 -135087917 - AluJb SINE Alu -29 283 5 389 92 70 21 chr9 7184055 7184197 -135087247 + (TTATA)n Simple_repeat Simple_repeat 1 149 0 561 126 23 0 chr9 7184341 7184428 -135087016 - AluSg SINE Alu -210 100 12 2129 106 0 13 chr9 7184477 7184779 -135086665 + AluSx SINE Alu 1 298 -14 2138 118 0 0 chr9 7184784 7185089 -135086355 + AluSx SINE Alu 1 305 -7 1990 118 3 13 chr9 7185106 7185410 -135086034 + AluSc SINE Alu 9 309 0 1237 225 3 40 chr9 7185464 7185627 -135085817 - AluJo SINE Alu -22 290 141 2175 120 0 0 chr9 7185627 7185936 -135085508 - AluSx SINE Alu -3 309 1 1237 225 3 40 chr9 7185936 7186070 -135085374 - AluJo SINE Alu -171 141 4 607 275 18 30 chr9 7186124 7186291 -135085153 - MER61D LTR ERV1 0 501 337 430 240 116 8 chr9 7186296 7186425 -135085019 - LTR28 LTR ERV1 -676 344 202 305 242 78 18 chr9 7186448 7186577 -135084867 + L1MCa LINE L1 1933 2065 -4361 1098 235 0 0 chr9 7186596 7186792 -135084652 - LTR28 LTR ERV1 -824 196 1 1889 101 69 3 chr9 7186917 7187205 -135084239 - AluSx SINE Alu -5 307 1 364 188 58 0 chr9 7187241 7187310 -135084134 - MER70A LTR ERVL 0 472 400 2177 164 9 83 chr9 7187411 7187729 -135083715 - MER70A LTR ERVL -82 390 50 2126 91 3 23 chr9 7187729 7188036 -135083408 - AluSp SINE Alu -12 301 1 2177 164 9 83 chr9 7188036 7188059 -135083385 - MER70A LTR ERVL -422 50 27 1876 146 14 0 chr9 7188059 7188346 -135083098 + AluSx SINE Alu 1 291 -21 2177 164 9 83 chr9 7188346 7188424 -135083020 - MER70A LTR ERVL -445 27 1 268 253 190 0 chr9 7188708 7188786 -135082658 - MLT1G1 LTR MaLR -206 389 297 539 160 0 20 chr9 7188786 7188886 -135082558 + MER4A LTR ERV1 1 98 -566 1606 112 37 121 chr9 7188886 7189263 -135082181 + MER4A LTR ERV1 261 664 0 1988 139 0 0 chr9 7189413 7189715 -135081729 - AluSx SINE Alu -4 308 7 2180 86 7 13 chr9 7189906 7190209 -135081235 - AluSg SINE Alu -8 302 2 1182 96 0 0 chr9 7191286 7191452 -135079992 - AluSg/x SINE Alu -15 295 130 2257 47 40 7 chr9 7192370 7192671 -135078773 - AluY SINE Alu 0 311 1 736 147 133 21 chr9 7192671 7192814 -135078630 - AluSg/x SINE Alu -13 299 141 2323 252 90 26 chr9 7192828 7193096 -135078348 + L2 LINE L2 2005 2254 -1060 2494 61 0 0 chr9 7193096 7193407 -135078037 - AluY SINE Alu 0 311 1 2323 252 90 26 chr9 7193407 7193901 -135077543 + L2 LINE L2 2254 2816 -498 649 241 120 49 chr9 7193906 7194172 -135077272 - LTR33 LTR ERVL -2 519 235 423 233 100 0 chr9 7194264 7194384 -135077060 - LTR33 LTR ERVL -388 133 2 778 263 50 93 chr9 7194384 7194597 -135076847 + L2 LINE L2 2827 3048 -265 2066 100 0 62 chr9 7194597 7194918 -135076526 + AluSx SINE Alu 1 301 -11 778 263 50 93 chr9 7194918 7195168 -135076276 + L2 LINE L2 3048 3270 -43 208 200 213 12 chr9 7195202 7195282 -135076162 - MIR SINE MIR -45 217 122 1678 152 47 7 chr9 7195327 7195624 -135075820 - AluJb SINE Alu -3 309 1 2192 102 16 0 chr9 7195671 7195974 -135075470 - AluSx SINE Alu -4 308 1 1065 111 0 0 chr9 7196021 7196174 -135075270 + AluSp/q SINE Alu 161 313 0 321 155 12 36 chr9 7196188 7196272 -135075172 - Zaphod DNA AcHobo -3041 990 909 241 180 0 20 chr9 7196343 7196393 -135075051 + LTR59 LTR ERV1 471 519 -78 21 57 0 0 chr9 7196397 7196432 -135075012 + AT_rich Low_complexity Low_complexity 1 35 0 2152 96 3 3 chr9 7196441 7196734 -135074710 - AluSq SINE Alu -20 293 1 389 176 73 94 chr9 7196737 7196817 -135074627 - Zaphod DNA AcHobo -3141 890 810 881 159 38 6 chr9 7196817 7196974 -135074470 + FRAM SINE Alu 1 162 -4 389 176 73 94 chr9 7196974 7197060 -135074384 - Zaphod DNA AcHobo -3221 810 728 2068 108 10 0 chr9 7197060 7197355 -135074089 - AluSx SINE Alu -14 298 1 389 176 73 94 chr9 7197355 7197420 -135074024 - Zaphod DNA AcHobo -3303 728 663 1321 53 0 6 chr9 7197441 7197612 -135073832 - AluY SINE Alu -6 305 136 2191 99 3 3 chr9 7197667 7197969 -135073475 - AluSx SINE Alu -10 302 1 1125 268 135 39 chr9 7197969 7198177 -135073267 - Zaphod DNA AcHobo -3392 639 453 2265 92 0 3 chr9 7198177 7198481 -135072963 - AluSg SINE Alu -7 303 1 1125 268 135 39 chr9 7198481 7198686 -135072758 - Zaphod DNA AcHobo -3578 453 186 1641 138 145 59 chr9 7198689 7198822 -135072622 + LTR54B LTR ERV1 1 121 -377 2210 108 7 0 chr9 7198822 7199129 -135072315 + AluSc SINE Alu 1 309 0 1641 138 145 59 chr9 7199129 7199237 -135072207 + LTR54B LTR ERV1 121 218 -280 1953 107 10 24 chr9 7199237 7199535 -135071909 + AluSx SINE Alu 1 294 -18 1641 138 145 59 chr9 7199535 7199747 -135071697 + LTR54B LTR ERV1 218 494 -4 706 168 61 26 chr9 7200420 7200636 -135070808 - MLT1A1 LTR MaLR 0 365 207 983 149 11 17 chr9 7200677 7200852 -135070592 + MER4A LTR ERV1 1 174 -490 2562 39 0 0 chr9 7200873 7201178 -135070266 + AluY SINE Alu 1 305 -6 878 164 18 12 chr9 7201279 7201450 -135069994 + AluJo SINE Alu 126 297 -15 208 222 42 69 chr9 7201526 7201598 -135069846 + MIR SINE MIR 193 262 0 2143 48 44 0 chr9 7202560 7202857 -135068587 - AluY SINE Alu 0 309 1 823 195 84 97 chr9 7204087 7204395 -135067049 + MER2 DNA MER2_type 42 345 0 305 340 113 5 chr9 7204437 7204640 -135066804 - MIR SINE MIR -18 244 20 314 89 0 0 chr9 7204853 7204898 -135066546 - MADE1 DNA Mariner -4 76 32 2071 89 14 0 chr9 7204898 7205189 -135066255 + AluSx SINE Alu 1 295 -17 1208 128 0 0 chr9 7205191 7205371 -135066073 + AluSq SINE Alu 134 313 0 951 199 0 0 chr9 7205497 7205663 -135065781 - AluJb SINE Alu -13 299 134 1883 106 65 0 chr9 7205663 7205938 -135065506 - AluSx SINE Alu -19 293 1 235 284 43 9 chr9 7205944 7206060 -135065384 - L1ME LINE L1 -338 5783 5664 621 118 0 0 chr9 7206204 7206289 -135065155 + AluY SINE Alu 207 291 -20 1410 165 120 39 chr9 7206458 7206631 -135064813 - MSTD LTR MaLR -2 394 236 2008 121 7 3 chr9 7206631 7206928 -135064516 - AluSx SINE Alu -14 298 1 1410 165 120 39 chr9 7206928 7207063 -135064381 - MSTD LTR MaLR -160 236 61 418 269 45 87 chr9 7207178 7207427 -135064017 + MIR SINE MIR 23 260 -2 2099 96 0 53 chr9 7207973 7208295 -135063149 - AluSg SINE Alu -5 305 1 1626 176 0 20 chr9 7208298 7208599 -135062845 - AluJo SINE Alu -17 295 1 192 395 45 13 chr9 7208599 7208756 -135062688 + L2 LINE L2 2517 2678 -636 2162 111 3 0 chr9 7208788 7209095 -135062349 + AluSp SINE Alu 1 308 -5 2194 100 0 10 chr9 7209584 7209884 -135061560 - AluSg SINE Alu -13 297 1 2182 112 0 6 chr9 7209970 7210283 -135061161 - AluSx SINE Alu -1 311 1 373 327 79 16 chr9 7210283 7210573 -135060871 + L2 LINE L2 2772 3081 -191 629 212 80 7 chr9 7210646 7210797 -135060647 + AluJb SINE Alu 134 295 -17 1474 115 0 0 chr9 7211338 7211547 -135059897 + AluSg/x SINE Alu 92 300 -10 1906 155 0 0 chr9 7211699 7212008 -135059436 + AluSx SINE Alu 1 309 -3 416 291 147 103 chr9 7212013 7212420 -135059024 + L1MEd LINE L1 66 513 -5606 1992 103 26 0 chr9 7212420 7212743 -135058701 + AluSg SINE Alu 1 330 0 416 291 147 103 chr9 7212743 7212966 -135058478 + L1MEd LINE L1 513 725 -5394 1136 189 12 87 chr9 7212975 7213123 -135058321 + AluJb SINE Alu 5 116 -196 2125 94 3 26 chr9 7213123 7213431 -135058013 + AluSq SINE Alu 1 301 -12 1136 189 12 87 chr9 7213431 7213615 -135057829 + AluJb SINE Alu 116 312 0 376 192 50 20 chr9 7213686 7213785 -135057659 + L1MC5 LINE L1 7336 7437 -524 604 274 63 83 chr9 7213806 7214038 -135057406 - L1 LINE L1 -2084 4062 3827 1516 79 26 40 chr9 7214038 7214265 -135057179 + AluSx SINE Alu 1 224 -88 604 274 63 83 chr9 7214265 7214694 -135056750 - L1 LINE L1 -2319 3827 3442 1837 129 33 0 chr9 7215759 7216061 -135055383 - AluJb SINE Alu 0 312 1 648 105 0 11 chr9 7216186 7216281 -135055163 + FLAM_C SINE Alu 34 127 -16 2099 110 7 0 chr9 7216289 7216599 -135054845 + AluSp SINE Alu 1 312 -1 2489 47 0 0 chr9 7216828 7217126 -135054318 - AluY SINE Alu -13 298 1 202 303 210 12 chr9 7217186 7217348 -135054096 + MIR SINE MIR 48 241 -21 1504 204 92 36 chr9 7217432 7217851 -135053593 + MER39 LTR ERV1 269 565 0 2255 100 0 0 chr9 7217915 7218224 -135053220 - AluSx SINE Alu -3 309 1 2141 103 3 10 chr9 7218256 7218567 -135052877 + AluSx SINE Alu 3 311 -1 195 42 0 0 chr9 7218812 7218836 -135052608 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1992 128 3 3 chr9 7218990 7219287 -135052157 - AluSp SINE Alu -16 297 1 2121 114 0 10 chr9 7219287 7219595 -135051849 - AluSx SINE Alu -7 305 1 1959 97 0 0 chr9 7219601 7219915 -135051529 - AluSc SINE Alu 0 336 23 1669 176 0 0 chr9 7219923 7220236 -135051208 - AluJb SINE Alu 0 313 1 2161 84 3 0 chr9 7220768 7221087 -135050357 - AluSx SINE Alu 0 320 1 1319 209 17 24 chr9 7221095 7221391 -135050053 - AluJo SINE Alu -18 294 1 966 201 14 5 chr9 7221399 7221608 -135049836 - AluJb SINE Alu 0 312 102 565 147 147 0 chr9 7221608 7221710 -135049734 + FLAM_C SINE Alu 1 117 -26 1882 154 0 3 chr9 7221723 7222034 -135049410 - AluJb SINE Alu -2 310 1 2188 92 3 7 chr9 7222101 7222406 -135049038 + AluSx SINE Alu 1 304 -8 1542 170 44 27 chr9 7222696 7223059 -135048385 - L1MA7 LINE L1 -100 6200 5825 974 166 0 12 chr9 7223066 7223229 -135048215 - AluJb SINE Alu -18 294 134 2146 105 0 0 chr9 7223229 7223523 -135047921 - AluSc SINE Alu -15 294 1 2060 124 0 3 chr9 7223528 7223826 -135047618 - AluSx SINE Alu -15 297 1 294 202 11 79 chr9 7224074 7224163 -135047281 - MER34B LTR ERV1 -448 117 35 259 161 18 18 chr9 7224326 7224382 -135047062 - AluSp SINE Alu -133 170 115 21 0 0 0 chr9 7224550 7224571 -135046873 + AT_rich Low_complexity Low_complexity 1 21 0 1890 155 0 0 chr9 7224571 7224867 -135046577 + AluSx SINE Alu 1 296 -16 1510 157 20 38 chr9 7224880 7225045 -135046399 - AluJo SINE Alu -14 298 139 2211 113 3 0 chr9 7225045 7225356 -135046088 - AluSx SINE Alu 0 312 1 1510 157 20 38 chr9 7225356 7225483 -135045961 - AluJo SINE Alu -173 139 11 754 133 18 0 chr9 7225610 7225723 -135045721 + AluSq/x SINE Alu 2 116 -196 1479 96 58 139 chr9 7225727 7225748 -135045696 - MER4C-int LTR ERV1 -4278 1268 1247 2199 114 0 0 chr9 7225748 7226055 -135045389 + AluSq SINE Alu 1 307 -6 1479 96 58 139 chr9 7226055 7226293 -135045151 - MER4C-int LTR ERV1 -4299 1247 991 2042 111 14 0 chr9 7226293 7226590 -135044854 - AluSg SINE Alu -9 301 1 1479 96 58 139 chr9 7226590 7226649 -135044795 - MER4C-int LTR ERV1 -4555 991 511 235 178 0 44 chr9 7226669 7226714 -135044730 - LTR49 LTR ERV1 -282 313 271 309 143 0 0 chr9 7226781 7226830 -135044614 - MER4C-int LTR ERV1 -5799 799 751 713 229 227 24 chr9 7226841 7227288 -135044156 - MER4C-int LTR ERV1 -6009 589 1 489 144 264 8 chr9 7227309 7227434 -135044010 - MER4C LTR ERV1 -18 447 291 358 195 98 89 chr9 7227489 7227612 -135043832 - MER4A LTR ERV1 -322 342 219 1800 86 89 51 chr9 7227612 7227904 -135043540 + AluSq SINE Alu 1 303 -10 412 16 16 0 chr9 7227926 7227987 -135043457 - AluY SINE Alu -1 310 249 252 0 0 0 chr9 7228090 7228118 -135043326 + (A)n Simple_repeat Simple_repeat 1 28 0 1954 121 28 0 chr9 7228170 7228459 -135042985 - AluSq SINE Alu -16 297 1 865 195 51 96 chr9 7229139 7229194 -135042250 - MSTD LTR MaLR 0 396 340 862 133 0 22 chr9 7229194 7229329 -135042115 - FLAM_C SINE Alu 0 133 2 865 195 51 96 chr9 7229329 7229546 -135041898 - MSTD LTR MaLR -56 340 87 2362 77 0 7 chr9 7229622 7229932 -135041512 - AluY SINE Alu -3 308 1 2110 132 0 0 chr9 7229958 7230269 -135041175 - AluSq SINE Alu -2 311 1 1820 145 7 7 chr9 7230350 7230660 -135040784 + AluJb SINE Alu 1 310 -2 1672 147 6 58 chr9 7230712 7230846 -135040598 + AluSx SINE Alu 1 140 -172 2165 102 0 0 chr9 7230846 7231140 -135040304 + AluY SINE Alu 1 294 -17 1672 147 6 58 chr9 7231140 7231332 -135040112 + AluSx SINE Alu 140 310 -2 591 236 52 17 chr9 7231895 7232069 -135039375 + MIR SINE MIR 77 256 -6 2216 73 0 0 chr9 7232191 7232479 -135038965 + AluSx SINE Alu 1 288 -24 1740 122 44 0 chr9 7235427 7235752 -135035692 + AluSx SINE Alu 1 337 0 2137 158 47 27 chr9 7235753 7236202 -135035242 - L1MB8 LINE L1 -72 6106 5649 180 0 0 0 chr9 7236202 7236222 -135035222 + (TA)n Simple_repeat Simple_repeat 1 20 0 2237 73 0 7 chr9 7236299 7236628 -135034816 - AluY SINE Alu 0 327 1 2008 98 13 36 chr9 7236759 7237065 -135034379 - AluSx SINE Alu -13 299 1 1201 209 60 11 chr9 7237093 7237376 -135034068 - AluJo SINE Alu -15 297 1 1984 73 52 11 chr9 7237568 7237854 -135033590 - AluSg SINE Alu -12 298 1 1752 64 0 0 chr9 7237855 7238074 -135033370 - L1PA6 LINE L1 0 6154 5936 773 171 39 0 chr9 7238098 7238227 -135033217 - AluJo SINE Alu -177 135 2 205 195 52 0 chr9 7238332 7238409 -135033035 + (TTATA)n Simple_repeat Simple_repeat 3 83 0 2143 104 3 7 chr9 7238419 7238716 -135032728 - AluSq SINE Alu -17 296 1 238 234 90 112 chr9 7238975 7239163 -135032281 + L2 LINE L2 2868 3051 -221 388 233 70 39 chr9 7239284 7239413 -135032031 + L1ME4a LINE L1 5987 6119 -2 2144 91 3 7 chr9 7239518 7239815 -135031629 - AluSp SINE Alu -17 296 1 300 200 67 40 chr9 7240254 7240329 -135031115 - L2 LINE L2 -33 3280 3204 202 299 81 58 chr9 7240541 7240849 -135030595 + L2 LINE L2 2290 2604 -710 359 294 99 60 chr9 7241030 7241394 -135030050 + L2 LINE L2 2934 3311 -2 394 161 23 23 chr9 7241429 7241516 -135029928 + MER112 DNA MER1_type 23 109 -151 2018 121 0 16 chr9 7241539 7241844 -135029600 - AluSx SINE Alu -11 301 2 23 33 0 0 chr9 7241848 7241878 -135029566 + AT_rich Low_complexity Low_complexity 1 30 0 640 150 154 91 chr9 7241882 7242102 -135029342 - MER46A DNA MER2_type -1 235 2 2237 86 0 10 chr9 7242883 7243197 -135028247 - AluY SINE Alu 0 311 1 1727 121 6 82 chr9 7243200 7243515 -135027929 - AluSx SINE Alu -21 291 1 22 35 0 0 chr9 7243656 7243685 -135027759 + AT_rich Low_complexity Low_complexity 1 29 0 716 221 117 29 chr9 7244202 7244442 -135027002 - L1MC4 LINE L1 -180 7862 7602 2279 100 3 0 chr9 7244520 7244829 -135026615 - AluSq SINE Alu -3 310 1 198 167 0 0 chr9 7245086 7245122 -135026322 + T-rich Low_complexity Low_complexity 2 37 0 373 272 41 47 chr9 7245170 7245375 -135026069 + MIR SINE MIR 30 237 -25 1987 136 7 0 chr9 7245656 7245966 -135025478 + AluSq SINE Alu 2 313 0 2353 88 0 0 chr9 7246524 7246830 -135024614 - AluSg SINE Alu -4 306 1 918 125 0 22 chr9 7246851 7246987 -135024457 - FLAM_C SINE Alu 0 133 1 2055 122 3 0 chr9 7247063 7247367 -135024077 - AluSx SINE Alu -7 305 1 1658 74 5 0 chr9 7247908 7248123 -135023321 - AluSg/x SINE Alu -14 298 83 2206 89 3 0 chr9 7248124 7248416 -135023028 - AluSp SINE Alu -19 294 2 2134 107 0 16 chr9 7248435 7248752 -135022692 - AluSx SINE Alu 0 312 1 1695 150 7 20 chr9 7248752 7249051 -135022393 - AluJo SINE Alu -5 307 12 2071 128 3 0 chr9 7249246 7249543 -135021901 + AluSx SINE Alu 1 298 -14 226 48 0 48 chr9 7249661 7249703 -135021741 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 1677 118 0 0 chr9 7249715 7249944 -135021500 - AluSx SINE Alu -83 229 1 1815 145 32 0 chr9 7250140 7250422 -135021022 + AluSx SINE Alu 2 292 -20 612 252 30 70 chr9 7250738 7250769 -135020675 - L1ME3A LINE L1 -294 5872 5841 1914 139 0 20 chr9 7250769 7251071 -135020373 - AluSx SINE Alu -14 298 3 612 252 30 70 chr9 7251071 7251269 -135020175 - L1ME3A LINE L1 -325 5841 5652 2130 93 7 0 chr9 7251287 7251576 -135019868 - AluSq SINE Alu -21 292 2 658 212 179 5 chr9 7251583 7251767 -135019677 - MER20 DNA MER1_type -3 216 1 778 199 0 57 chr9 7251839 7252015 -135019429 - FRAM SINE Alu -11 165 1 1777 96 88 7 chr9 7252024 7252296 -135019148 - AluSc SINE Alu -15 294 1 1976 99 20 10 chr9 7252355 7252658 -135018786 - AluSq SINE Alu -7 306 1 591 98 0 0 chr9 7253396 7253478 -135017966 - AluSg/x SINE Alu -20 289 208 903 148 24 30 chr9 7253673 7253842 -135017602 - AluJo/FRAM SINE Alu -11 301 134 2148 110 0 0 chr9 7253842 7254141 -135017303 - AluSx SINE Alu -8 304 6 2024 109 0 3 chr9 7254241 7254525 -135016919 + AluSx SINE Alu 1 283 -29 296 69 52 52 chr9 7254573 7254631 -135016813 - Alu SINE Alu 0 300 243 1008 111 0 7 chr9 7254635 7254779 -135016665 - AluSq/x SINE Alu -170 143 1 2185 64 42 0 chr9 7254790 7255073 -135016371 - AluY SINE Alu -16 295 1 227 242 91 0 chr9 7255452 7255518 -135015926 + LTR67 LTR ERVL 485 556 -1 1937 136 3 7 chr9 7256242 7256552 -135014892 + AluSq SINE Alu 1 309 -4 3157 186 18 46 chr9 7256975 7257578 -135013866 + MER82 DNA MER2_type 2 586 -67 1992 106 7 16 chr9 7257578 7257881 -135013563 - AluSq SINE Alu -13 300 1 3157 186 18 46 chr9 7257881 7257945 -135013499 + MER82 DNA MER2_type 586 650 -3 451 256 147 24 chr9 7258096 7258307 -135013137 + MIR SINE MIR 6 242 -20 584 232 64 64 chr9 7259855 7260058 -135011386 - MIR SINE MIR -26 236 30 1248 138 0 15 chr9 7260094 7260289 -135011155 - AluSx SINE Alu -120 192 1 1956 202 23 32 chr9 7260808 7261099 -135010345 - MLT1C LTR MaLR 0 467 180 2179 92 0 7 chr9 7261099 7261394 -135010050 - AluSg SINE Alu -17 293 1 1956 202 23 32 chr9 7261394 7261573 -135009871 - MLT1C LTR MaLR -287 180 1 256 263 140 22 chr9 7262542 7262680 -135008764 + L1ME LINE L1 5320 5474 -647 184 268 244 0 chr9 7262895 7262977 -135008467 + MIR SINE MIR 29 130 -78 2015 122 0 3 chr9 7262987 7263291 -135008153 - AluSx SINE Alu -9 303 1 704 256 142 89 chr9 7263296 7263984 -135007460 + L2 LINE L2 2422 3145 -168 208 351 117 35 chr9 7264367 7264794 -135006650 - L2 LINE L2 -1 3271 2810 1673 127 3 71 chr9 7264798 7264976 -135006468 - AluJb SINE Alu -9 303 155 2313 83 3 0 chr9 7264976 7265277 -135006167 - AluSp SINE Alu -11 302 1 1673 127 3 71 chr9 7265277 7265421 -135006023 - AluJb SINE Alu -157 155 3 1036 147 0 6 chr9 7265824 7265994 -135005450 + AluJb SINE Alu 3 171 -141 1708 77 88 49 chr9 7266160 7266445 -135004999 - AluY SINE Alu -2 309 14 261 83 0 0 chr9 7266559 7266595 -135004849 + (A)n Simple_repeat Simple_repeat 1 36 0 272 174 0 0 chr9 7266724 7266770 -135004674 + L2 LINE L2 3264 3309 -4 212 359 76 40 chr9 7266819 7267042 -135004402 + L2 LINE L2 2851 3081 -191 1768 149 26 4 chr9 7267042 7267310 -135004134 - AluSx SINE Alu -38 274 1 2175 128 3 0 chr9 7267645 7267951 -135003493 + AluSp SINE Alu 1 307 -6 2072 107 7 10 chr9 7267964 7268255 -135003189 + AluSx SINE Alu 3 292 -20 194 0 39 0 chr9 7268256 7268282 -135003162 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 278 139 0 0 chr9 7268424 7268467 -135002977 - AluSg SINE Alu -6 295 253 2136 112 0 0 chr9 7268467 7268743 -135002701 - AluSg SINE Alu -34 276 1 2419 85 0 9 chr9 7269583 7269899 -135001545 - AluSq SINE Alu 0 313 1 979 178 15 54 chr9 7269904 7270163 -135001281 - L1MB7 LINE L1 0 6184 5936 527 194 32 48 chr9 7270176 7270300 -135001144 - L2 LINE L2 -2 3311 3190 244 363 104 0 chr9 7270327 7270462 -135000982 - L2 LINE L2 -284 3029 2881 283 286 109 51 chr9 7270585 7270760 -135000684 - L2 LINE L2 -607 2707 2523 2206 122 0 3 chr9 7271383 7271686 -134999758 - AluSx SINE Alu -8 304 3 1900 174 0 0 chr9 7271724 7272028 -134999416 - AluJb SINE Alu -8 304 1 1632 95 14 0 chr9 7272220 7272442 -134999002 + AluSq SINE Alu 1 225 -88 1519 119 78 71 chr9 7273048 7273343 -134998101 - AluJb SINE Alu -15 297 1 10869 55 29 16 chr9 7274309 7275674 -134995770 - SVA Other Other -2 1384 2 228 67 0 0 chr9 7275687 7275717 -134995727 + (T)n Simple_repeat Simple_repeat 1 30 0 1703 157 13 43 chr9 7275997 7276142 -134995302 + AluJo SINE Alu 1 134 -178 2101 138 10 0 chr9 7276142 7276446 -134994998 + AluSx SINE Alu 1 307 -5 1703 157 13 43 chr9 7276446 7276600 -134994844 + AluJo SINE Alu 134 291 -21 1979 137 0 16 chr9 7276667 7276982 -134994462 - AluJb SINE Alu 0 312 3 210 257 57 0 chr9 7277109 7277179 -134994265 + MIR SINE MIR 62 135 -127 260 231 51 0 chr9 7277217 7277295 -134994149 + L1ME3A LINE L1 5003 5084 -1062 2242 64 68 14 chr9 7277298 7277593 -134993851 - AluY SINE Alu 0 311 1 345 24 0 0 chr9 7277675 7277717 -134993727 + (TC)n Simple_repeat Simple_repeat 2 43 0 1663 255 31 103 chr9 7277773 7277879 -134993565 + L1ME3A LINE L1 5263 5375 -795 2324 91 3 3 chr9 7277879 7278177 -134993267 + AluSq SINE Alu 1 298 -15 1663 255 31 103 chr9 7278177 7278673 -134992771 + L1ME3A LINE L1 5375 5770 -400 1735 145 80 0 chr9 7278673 7278963 -134992481 - AluSx SINE Alu 0 311 1 1663 255 31 103 chr9 7278963 7279337 -134992107 + L1ME3A LINE L1 5770 6170 0 2141 94 3 41 chr9 7279347 7279667 -134991777 + AluSc SINE Alu 1 308 -1 790 163 31 0 chr9 7279686 7279815 -134991629 + FLAM_C SINE Alu 1 133 0 1846 156 28 3 chr9 7279891 7280179 -134991265 - AluSx SINE Alu -17 295 1 814 284 10 0 chr9 7280281 7280489 -134990955 - MER63A DNA MER1_type 0 210 1 2260 98 3 3 chr9 7280534 7280831 -134990613 + AluSg SINE Alu 1 297 -13 2283 98 0 0 chr9 7280959 7281255 -134990189 - AluSg SINE Alu -14 296 1 306 262 219 16 chr9 7281297 7281480 -134989964 + MIR SINE MIR 34 253 -9 1868 180 158 68 chr9 7282227 7282269 -134989175 - MLT1F1 LTR MaLR 0 567 530 2268 101 3 0 chr9 7282269 7282593 -134988851 + AluSp SINE Alu 1 325 0 1868 180 158 68 chr9 7282593 7282916 -134988528 - MLT1F1 LTR MaLR -37 530 237 504 45 0 0 chr9 7282916 7282983 -134988461 + (TCTCCC)n Simple_repeat Simple_repeat 1 67 0 8756 24 9 264 chr9 7282983 7284767 -134986677 + SVA Other Other 57 1386 0 1868 180 158 68 chr9 7284767 7284909 -134986535 - MLT1F1 LTR MaLR -329 238 11 1789 166 31 0 chr9 7285773 7286063 -134985381 + AluJb SINE Alu 1 299 -13 228 299 130 0 chr9 7286351 7286428 -134985016 + L2 LINE L2 3186 3272 0 1810 153 7 7 chr9 7286647 7286956 -134984488 + AluJb SINE Alu 2 310 0 2012 83 8 8 chr9 7287217 7287481 -134983963 - AluSg SINE Alu -19 291 28 400 345 81 5 chr9 7287672 7287895 -134983549 - MIR SINE MIR -15 247 8 1111 90 28 0 chr9 7288160 7288305 -134983139 + AluSg/x SINE Alu 150 298 -14 1989 126 77 0 chr9 7288462 7288772 -134982672 - MER1B DNA MER1_type 0 337 4 2217 89 13 16 chr9 7288950 7289264 -134982180 + AluSp SINE Alu 1 313 0 507 176 96 64 chr9 7289264 7289381 -134982063 - FLAM_C SINE Alu -174 128 5 273 286 70 29 chr9 7290017 7290188 -134981256 - L1ME LINE L1 -406 5715 5538 25 0 0 0 chr9 7291242 7291267 -134980177 + AT_rich Low_complexity Low_complexity 1 25 0 22 70 0 0 chr9 7291407 7291450 -134979994 + AT_rich Low_complexity Low_complexity 1 43 0 695 170 0 0 chr9 7291458 7291570 -134979874 - FLAM_C SINE Alu -30 113 2 327 281 38 72 chr9 7291576 7291661 -134979783 - L1MC4 LINE L1 -1 8041 7955 869 165 83 61 chr9 7291661 7291891 -134979553 + MER46A DNA MER2_type 1 235 -1 327 281 38 72 chr9 7291891 7292040 -134979404 - L1MC4 LINE L1 -87 7955 7815 247 119 203 0 chr9 7292045 7292104 -134979340 - L1MC4 LINE L1 -273 7769 7699 326 228 22 73 chr9 7292146 7292282 -134979162 - L1MC4 LINE L1 -725 7317 7189 710 200 35 102 chr9 7292287 7292618 -134978826 - L1ME3A LINE L1 -1 6169 5865 562 209 160 12 chr9 7292646 7292887 -134978557 - L1ME3A LINE L1 -556 5606 5328 231 276 105 6 chr9 7293061 7293242 -134978202 + L1MC5 LINE L1 7628 7826 -135 1881 155 7 10 chr9 7293265 7293561 -134977883 - AluJo SINE Alu -17 295 1 350 284 22 33 chr9 7293715 7293820 -134977624 - L1ME4a LINE L1 -9 6112 6008 2266 110 0 0 chr9 7293820 7294121 -134977323 - AluSg SINE Alu -9 301 1 350 284 22 33 chr9 7294121 7294198 -134977246 - L1ME4a LINE L1 -113 6008 5932 192 185 19 37 chr9 7294784 7294838 -134976606 - MIR SINE MIR -67 141 89 7430 51 2 0 chr9 7296779 7297678 -134973766 - L1PA6 LINE L1 0 6154 5254 1871 134 42 0 chr9 7297707 7297991 -134973453 - AluSx SINE Alu -16 296 1 575 256 94 6 chr9 7298193 7298373 -134973071 + MER58A DNA MER1_type 28 223 -1 1333 155 52 174 chr9 7300541 7300918 -134970526 - Charlie1b DNA MER1_type -2238 523 238 2261 111 0 7 chr9 7300918 7301225 -134970219 + AluSq SINE Alu 1 305 -8 1333 155 52 174 chr9 7301225 7301437 -134970007 - Charlie1b DNA MER1_type -2523 238 2 1804 186 0 3 chr9 7301856 7302168 -134969276 - AluJb SINE Alu -1 311 1 378 307 108 25 chr9 7302382 7302623 -134968821 - L1ME4a LINE L1 -43 6078 5818 2318 103 0 3 chr9 7302640 7302942 -134968502 + AluSx SINE Alu 1 301 -11 240 326 93 8 chr9 7303248 7303377 -134968067 + MIR3 SINE MIR 67 206 -2 231 299 186 26 chr9 7303865 7304096 -134967348 + L3 LINE CR1 891 1158 -419 2442 74 0 0 chr9 7304207 7304503 -134966941 - AluY SINE Alu -15 296 1 206 339 43 38 chr9 7304509 7304645 -134966799 + L3 LINE CR1 1372 1511 -66 2278 98 3 3 chr9 7304645 7304941 -134966503 + AluSp SINE Alu 1 296 -17 206 339 43 38 chr9 7304941 7304990 -134966454 + L3 LINE CR1 1511 1558 -19 351 279 98 27 chr9 7305536 7305719 -134965725 - MIR3 SINE MIR -4 204 9 728 286 51 83 chr9 7307227 7307417 -134964027 - MLT1J LTR MaLR 0 511 316 1881 117 92 0 chr9 7307417 7307698 -134963746 - AluSx SINE Alu -5 307 1 728 286 51 83 chr9 7307698 7308035 -134963409 - MLT1J LTR MaLR -195 316 1 2426 54 3 10 chr9 7308114 7308410 -134963034 + AluY SINE Alu 1 294 -17 2673 61 0 0 chr9 7308590 7308901 -134962543 - AluY SINE Alu 0 311 1 2136 116 0 35 chr9 7308901 7309212 -134962232 - AluSq SINE Alu -13 300 1 434 309 57 10 chr9 7309700 7309894 -134961550 + MIR SINE MIR 54 256 -6 1847 158 20 3 chr9 7310220 7310512 -134960932 - AluSx SINE Alu -15 297 1 262 0 53 0 chr9 7311839 7311877 -134959567 + (TTTTTG)n Simple_repeat Simple_repeat 3 42 0 628 106 0 4 chr9 7312348 7312567 -134958877 + AluSx SINE Alu 3 299 -11 777 299 59 21 chr9 7312814 7313235 -134958209 - L1ME3A LINE L1 -204 5949 5513 1705 197 3 0 chr9 7313239 7313533 -134957911 - AluJo SINE Alu -17 295 1 526 200 159 3 chr9 7313549 7313699 -134957745 - L1MB7 LINE L1 -9 6155 5992 344 219 136 67 chr9 7313698 7314050 -134957394 - L1ME3A LINE L1 -686 5475 5102 * 279 245 50 80 chr9 7314099 7314299 -134957145 - L1ME3A LINE L1 -5016 1103 910 22 35 0 0 chr9 7365332 7365361 -134906083 + AT_rich Low_complexity Low_complexity 1 29 0 579 295 101 4 chr9 7367064 7367322 -134904122 + LTR16A LTR ERVL 168 450 0 1702 203 42 3 chr9 7368001 7368331 -134903113 - MER2 DNA MER2_type 0 344 2 245 337 41 51 chr9 7368970 7369068 -134902376 + L2 LINE L2 3157 3253 -19 493 138 0 58 chr9 7369365 7369452 -134901992 + L1M3f LINE L1 6 87 -5241 2210 98 3 10 chr9 7369453 7369749 -134901695 + AluSc SINE Alu 1 294 -15 384 240 0 0 chr9 7369749 7369870 -134901574 + (TA)n Simple_repeat Simple_repeat 2 122 0 3820 174 42 52 chr9 7369870 7370586 -134900858 + L1M3f LINE L1 77 784 -4544 1989 127 6 41 chr9 7370586 7370726 -134900718 + AluSx SINE Alu 5 148 -164 2278 49 39 29 chr9 7370726 7371034 -134900410 + AluY SINE Alu 1 311 0 1989 127 6 41 chr9 7371034 7371208 -134900236 + AluSx SINE Alu 148 308 -4 3820 174 42 52 chr9 7371208 7371369 -134900075 + L1M3f LINE L1 784 945 -4383 2931 90 7 7 chr9 7371846 7372291 -134899153 - L1P LINE L1 -3470 2676 2232 806 158 0 7 chr9 7372291 7372430 -134899014 - Tigger1 DNA MER2_type -1217 1201 1064 1149 112 0 0 chr9 7372430 7372582 -134898862 - AluSp SINE Alu -14 299 148 1514 112 5 27 chr9 7372582 7372805 -134898639 - AluSx SINE Alu -94 218 1 2852 135 100 27 chr9 7372805 7373406 -134898038 - Tigger1 DNA MER2_type -1346 1072 428 522 43 0 0 chr9 7373406 7373475 -134897969 + (GA)n Simple_repeat Simple_repeat 1 69 0 1517 187 59 0 chr9 7373475 7373796 -134897648 - Tigger1 DNA MER2_type -2076 342 3 830 112 0 70 chr9 7374306 7374449 -134896995 + FLAM_C SINE Alu 1 133 0 271 57 0 0 chr9 7375741 7375776 -134895668 - U2 snRNA snRNA -153 35 1 2313 87 0 0 chr9 7376713 7377002 -134894442 - AluY SINE Alu -22 289 1 187 182 0 0 chr9 7377004 7377037 -134894407 + MIR3 SINE MIR 154 186 -22 22 0 0 0 chr9 7378997 7379019 -134892425 + AT_rich Low_complexity Low_complexity 1 22 0 188 206 123 41 chr9 7379151 7379224 -134892220 + MIR SINE MIR 75 153 -55 21 0 0 0 chr9 7379827 7379848 -134891596 + AT_rich Low_complexity Low_complexity 1 21 0 336 48 0 0 chr9 7382212 7382254 -134889190 + (TG)n Simple_repeat Simple_repeat 1 42 0 207 240 0 20 chr9 7384070 7384120 -134887324 + CT-rich Low_complexity Low_complexity 4 52 0 1125 184 45 58 chr9 7384445 7384755 -134886689 - L1ME1 LINE L1 -4 6162 5857 1733 157 35 3 chr9 7385762 7385922 -134885522 - AluSx SINE Alu -16 296 122 2223 117 10 7 chr9 7385922 7386231 -134885213 - AluSg SINE Alu 0 310 1 1733 157 35 3 chr9 7386231 7386357 -134885087 - AluSx SINE Alu -190 122 1 2768 7 0 3 chr9 7388221 7388527 -134882917 - AluYa5 SINE Alu -6 305 1 360 0 0 0 chr9 7388651 7388691 -134882753 + (TG)n Simple_repeat Simple_repeat 1 40 0 462 277 35 7 chr9 7389761 7389902 -134881542 + MIR SINE MIR 98 242 -20 2102 188 25 11 chr9 7390734 7391212 -134880232 + L1MB7 LINE L1 5691 6175 -9 21 0 0 0 chr9 7391345 7391366 -134880078 + AT_rich Low_complexity Low_complexity 1 21 0 422 195 0 0 chr9 7391408 7391495 -134879949 + L1ME2 LINE L1 6068 6154 -10 22 35 0 0 chr9 7393731 7393760 -134877684 + AT_rich Low_complexity Low_complexity 1 29 0 905 252 96 15 chr9 7394661 7394994 -134876450 - MLT1E2 LTR MaLR 0 626 267 331 225 0 25 chr9 7394992 7395072 -134876372 - MLT1E2 LTR MaLR -407 98 21 * 759 161 22 29 chr9 7395146 7395283 -134876161 + AluJ SINE Alu 1 136 -176 32 0 0 0 chr9 7395996 7396028 -134875416 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr9 7396093 7396114 -134875330 + AT_rich Low_complexity Low_complexity 1 21 0 981 189 0 0 chr9 7398691 7398876 -134872568 - L1MC1 LINE L1 -12 6321 6137 781 139 0 15 chr9 7398920 7399057 -134872387 - L1MC1 LINE L1 -184 6149 6015 252 0 0 0 chr9 7399070 7399098 -134872346 + (TG)n Simple_repeat Simple_repeat 2 29 0 879 184 6 12 chr9 7400012 7400175 -134871269 + AluJ SINE Alu 136 297 -15 212 305 95 38 chr9 7401313 7401418 -134870026 - L2 LINE L2 -13 3259 3149 285 332 51 16 chr9 7401426 7401566 -134869878 + MER5B DNA MER1_type 38 175 -3 265 277 70 7 chr9 7401969 7402095 -134869349 + MIR SINE MIR 48 151 -57 472 321 132 35 chr9 7402869 7403209 -134868235 + L1MC/D LINE L1 5431 5803 -318 2134 134 3 0 chr9 7403484 7403783 -134867661 + AluSx SINE Alu 1 300 -12 290 49 0 0 chr9 7406029 7406070 -134865374 - FLAM_A SINE Alu -71 61 21 1177 174 0 15 chr9 7406072 7406267 -134865177 - AluJo SINE Alu -119 193 2 251 234 78 13 chr9 7406634 7406711 -134864733 + L1MC/D LINE L1 5800 5881 -1927 387 261 203 39 chr9 7408253 7408460 -134862984 + MIR SINE MIR 12 252 -10 21 36 0 0 chr9 7409131 7409159 -134862285 + AT_rich Low_complexity Low_complexity 1 28 0 26 50 0 0 chr9 7409310 7409350 -134862094 + AT_rich Low_complexity Low_complexity 1 40 0 522 280 63 0 chr9 7409808 7409951 -134861493 - MIR SINE MIR -3 259 108 267 174 167 72 chr9 7409980 7410118 -134861326 + L1ME4a LINE L1 5314 5464 -2344 486 275 53 8 chr9 7410195 7410439 -134861005 + L1ME4a LINE L1 5595 5849 -272 2118 110 3 41 chr9 7413368 7413685 -134857759 - AluSp SINE Alu -8 305 1 1335 210 24 66 chr9 7413891 7414272 -134857172 + MLT1A1 LTR MaLR 1 365 0 839 138 239 0 chr9 7415706 7415873 -134855571 - AluJo SINE Alu -105 207 1 1854 273 150 16 chr9 7416550 7417316 -134854128 + L2 LINE L2 837 1705 -1609 5296 116 15 29 chr9 7417338 7418172 -134853272 - L1PA16 LINE L1 -13 6153 5309 2199 103 3 7 chr9 7418172 7418464 -134852980 - AluSg SINE Alu -19 291 1 5296 116 15 29 chr9 7418464 7418532 -134852912 - L1PA16 LINE L1 -857 5309 5242 599 59 0 12 chr9 7418532 7418617 -134852827 + (TTTC)n Simple_repeat Simple_repeat 1 84 0 5296 116 15 29 chr9 7418617 7418731 -134852713 - L1PA16 LINE L1 -924 5242 5160 310 325 57 46 chr9 7418732 7418842 -134852602 + L2 LINE L2 1701 1808 -1506 501 62 0 0 chr9 7418842 7418907 -134852537 + (TCTA)n Simple_repeat Simple_repeat 1 65 0 2115 111 4 0 chr9 7418908 7419188 -134852256 - AluSq SINE Alu -32 281 1 310 325 57 46 chr9 7419188 7419269 -134852175 + L2 LINE L2 1807 1896 -1418 1076 190 143 60 chr9 7419283 7419668 -134851776 - LTR8A LTR ERV1 0 727 311 1380 121 43 5 chr9 7419669 7419876 -134851568 + AluSg/x SINE Alu 77 291 -21 929 160 166 22 chr9 7419914 7420249 -134851195 - LTR29 LTR ERV1 -198 424 1 1946 276 122 41 chr9 7420268 7421331 -134850113 + L2 LINE L2 1937 3090 -223 499 224 65 0 chr9 7421333 7421440 -134850004 + L2 LINE L2 3200 3313 0 1842 185 0 0 chr9 7421778 7422076 -134849368 + AluJo SINE Alu 1 298 -14 22 35 0 0 chr9 7422542 7422571 -134848873 + AT_rich Low_complexity Low_complexity 1 29 0 260 252 41 16 chr9 7423587 7423710 -134847734 + LTR33 LTR ERVL 1 126 -395 241 294 55 40 chr9 7423798 7423999 -134847445 + LTR33 LTR ERVL 303 506 -15 303 286 29 0 chr9 7424711 7424781 -134846663 + C-rich Low_complexity Low_complexity 3 74 0 450 216 29 0 chr9 7424802 7424904 -134846540 - FLAM_C SINE Alu -26 107 3 459 0 0 0 chr9 7426403 7426454 -134844990 + (TCTA)n Simple_repeat Simple_repeat 2 52 0 1954 153 0 0 chr9 7426455 7426743 -134844701 - AluSx SINE Alu -24 288 1 235 350 91 0 chr9 7427127 7427270 -134844174 + L2 LINE L2 1813 1968 -1346 517 280 242 22 chr9 7427274 7427638 -134843806 + L2 LINE L2 1723 2166 -1148 308 233 100 33 chr9 7427640 7427760 -134843684 + L2 LINE L2 3159 3286 -27 21 0 0 0 chr9 7427913 7427934 -134843510 + AT_rich Low_complexity Low_complexity 1 21 0 204 40 0 0 chr9 7428779 7428804 -134842640 + (T)n Simple_repeat Simple_repeat 1 25 0 207 305 102 31 chr9 7428918 7429046 -134842398 - MIR SINE MIR -92 170 34 365 187 78 12 chr9 7429800 7429966 -134841478 + (TA)n Simple_repeat Simple_repeat 2 178 0 332 199 54 36 chr9 7429911 7430077 -134841367 + (TATAA)n Simple_repeat Simple_repeat 5 173 0 * 251 254 45 0 chr9 7430159 7430226 -134841218 - MER5B DNA MER1_type -7 171 102 1915 170 0 0 chr9 7430820 7431114 -134840330 - AluJb SINE Alu -18 294 1 223 203 95 0 chr9 7431913 7431987 -134839457 - MIR SINE MIR -132 130 50 722 220 56 33 chr9 7432010 7432224 -134839220 + MER20 DNA MER1_type 1 219 0 324 143 0 0 chr9 7433162 7433218 -134838226 - Alu SINE Alu 0 302 247 23 0 0 0 chr9 7433468 7433491 -134837953 + AT_rich Low_complexity Low_complexity 1 23 0 1769 83 36 7 chr9 7433491 7433769 -134837675 - L1MA5A LINE L1 -1 6296 6011 420 276 70 68 chr9 7434462 7434846 -134836598 + L1ME4a LINE L1 5477 5861 -260 189 107 0 0 chr9 7434853 7434881 -134836563 + (TA)n Simple_repeat Simple_repeat 1 28 0 2223 100 3 0 chr9 7434901 7435190 -134836254 - AluSq SINE Alu -23 290 1 2631 85 26 8 chr9 7438464 7438852 -134832592 + L1MA1 LINE L1 5908 6302 0 718 231 75 6 chr9 7438988 7439161 -134832283 + MER58A DNA MER1_type 39 223 -1 21 0 0 0 chr9 7440534 7440555 -134830889 + AT_rich Low_complexity Low_complexity 1 21 0 2112 122 3 10 chr9 7440753 7441049 -134830395 + AluSx SINE Alu 1 294 -18 711 227 91 91 chr9 7441627 7442187 -134829257 - MER69 DNA AcHobo -207 2319 1760 486 281 52 30 chr9 7442228 7442459 -134828985 - MER69 DNA AcHobo -914 312 77 26 0 0 0 chr9 7442886 7442912 -134828532 + AT_rich Low_complexity Low_complexity 1 26 0 349 290 84 39 chr9 7443064 7443219 -134828225 + MER5B DNA MER1_type 17 178 0 10115 46 18 32 chr9 7443823 7445118 -134826326 - SVA Other Other -6 1380 104 1430 183 129 0 chr9 7445361 7445624 -134825820 - AluJb SINE Alu -5 297 1 1306 206 14 27 chr9 7445878 7446170 -134825274 + AluJb SINE Alu 1 288 -24 260 217 0 0 chr9 7446595 7446655 -134824789 + A-rich Low_complexity Low_complexity 1 60 0 360 0 0 0 chr9 7446728 7446768 -134824676 + (CA)n Simple_repeat Simple_repeat 2 41 0 287 254 0 44 chr9 7447031 7447145 -134824299 - Charlie8 DNA MER1_type -2247 170 62 274 238 12 0 chr9 7447154 7447234 -134824210 + (CA)n Simple_repeat Simple_repeat 2 82 0 576 110 134 0 chr9 7447633 7447760 -134823684 + L1P LINE L1 5254 5397 -764 948 146 139 0 chr9 7447760 7447918 -134823526 + AluSx SINE Alu 19 198 -114 24 32 0 0 chr9 7448262 7448293 -134823151 + AT_rich Low_complexity Low_complexity 1 31 0 203 214 34 51 chr9 7448814 7448931 -134822513 + (CATATA)n Simple_repeat Simple_repeat 3 117 0 2093 118 0 0 chr9 7449090 7449378 -134822066 + AluSx SINE Alu 1 288 -24 21 0 0 0 chr9 7449378 7449399 -134822045 + AT_rich Low_complexity Low_complexity 1 21 0 271 156 0 0 chr9 7449890 7449935 -134821509 + Alu SINE Alu 2 46 -256 29 0 0 0 chr9 7449943 7449972 -134821472 + AT_rich Low_complexity Low_complexity 1 29 0 532 274 117 48 chr9 7450159 7450389 -134821055 - MIR SINE MIR -11 251 6 1331 110 0 6 chr9 7451504 7451686 -134819758 + AluSg/x SINE Alu 119 299 -11 28 29 0 0 chr9 7452199 7452234 -134819210 + AT_rich Low_complexity Low_complexity 1 35 0 2414 69 0 10 chr9 7452340 7452644 -134818800 + AluSc SINE Alu 1 301 -8 1136 153 6 0 chr9 7452644 7452821 -134818623 + AluJb SINE Alu 134 311 -1 345 47 0 0 chr9 7452876 7452919 -134818525 + (TG)n Simple_repeat Simple_repeat 1 43 0 647 174 16 0 chr9 7452919 7453040 -134818404 + L1MC1 LINE L1 6210 6332 -1 1128 151 170 0 chr9 7453160 7453378 -134818066 - AluJo SINE Alu -57 255 1 1539 166 95 14 chr9 7454706 7454989 -134816455 - AluJo SINE Alu -6 306 1 311 188 16 16 chr9 7455252 7455316 -134816128 - MER20 DNA MER1_type -154 65 2 186 43 0 0 chr9 7456144 7456167 -134815277 + (CAAAAA)n Simple_repeat Simple_repeat 4 26 0 621 260 158 0 chr9 7457442 7457619 -134813825 + MIR SINE MIR 34 238 -24 21 36 0 0 chr9 7458459 7458487 -134812957 + AT_rich Low_complexity Low_complexity 1 28 0 3754 60 0 4 chr9 7458519 7459002 -134812442 - L1PA5 LINE L1 0 6154 5674 1873 57 0 4 chr9 7459002 7459232 -134812212 + AluY SINE Alu 73 301 -10 1171 108 0 0 chr9 7459239 7459396 -134812048 + AluSg/x SINE Alu 138 294 -18 269 193 24 12 chr9 7459714 7459797 -134811647 + (TA)n Simple_repeat Simple_repeat 2 85 0 794 283 87 49 chr9 7459870 7460364 -134811080 - MLT2B1 LTR ERVL -7 513 1 467 198 0 0 chr9 7460366 7460467 -134810977 + L1M4 LINE L1 3821 3921 -2225 414 268 82 64 chr9 7460528 7460621 -134810823 + L1M4 LINE L1 4013 4103 -2043 2257 50 43 0 chr9 7460621 7460900 -134810544 - AluYa5 SINE Alu -20 291 1 414 268 82 64 chr9 7460900 7461026 -134810418 + L1M4 LINE L1 4103 4236 -1910 634 282 60 23 chr9 7461182 7461568 -134809876 + L1M4 LINE L1 4945 5344 -802 2177 113 3 3 chr9 7461572 7461873 -134809571 + AluSx SINE Alu 1 301 -11 218 328 89 89 chr9 7462250 7462497 -134808947 + MIR SINE MIR 13 259 -3 23 68 0 0 chr9 7462516 7462560 -134808884 + AT_rich Low_complexity Low_complexity 1 44 0 668 186 34 8 chr9 7462631 7462749 -134808695 + FLAM_C SINE Alu 3 123 -20 1977 144 3 0 chr9 7463382 7463667 -134807777 - AluSx SINE Alu -26 286 1 21 0 0 0 chr9 7464145 7464166 -134807278 + AT_rich Low_complexity Low_complexity 1 21 0 371 246 39 14 chr9 7464295 7464492 -134806952 - MLT1K LTR MaLR -170 418 165 21 57 0 0 chr9 7465474 7465509 -134805935 + AT_rich Low_complexity Low_complexity 1 35 0 377 312 111 11 chr9 7466356 7466545 -134804899 - L2 LINE L2 -6 3307 3100 180 152 0 0 chr9 7466687 7466720 -134804724 + (TA)n Simple_repeat Simple_repeat 1 33 0 712 189 0 15 chr9 7467644 7467776 -134803668 - FLAM_C SINE Alu -13 130 1 321 262 8 74 chr9 7468504 7468626 -134802818 + MIR SINE MIR 60 173 -89 2093 121 7 0 chr9 7468792 7469089 -134802355 - AluSx SINE Alu -13 299 1 277 241 0 100 chr9 7469887 7470002 -134801442 + MIR SINE MIR 34 137 -71 2141 114 14 0 chr9 7470197 7470486 -134800958 + AluSx SINE Alu 7 299 -13 774 136 0 0 chr9 7471441 7471559 -134799885 - AluJo SINE Alu -173 139 22 21 0 0 0 chr9 7471734 7471755 -134799689 + AT_rich Low_complexity Low_complexity 1 21 0 581 280 0 14 chr9 7472524 7472667 -134798777 - MIR SINE MIR -74 188 48 1397 186 29 7 chr9 7472994 7473268 -134798176 - MLT1-int LTR MaLR -456 915 636 549 238 136 25 chr9 7476263 7476549 -134794895 - L1ME4a LINE L1 0 6121 5804 550 244 62 21 chr9 7476825 7477018 -134794426 - MER112 DNA MER1_type -58 202 2 649 179 8 0 chr9 7477887 7478004 -134793440 + FLAM_C SINE Alu 1 118 -15 486 0 0 0 chr9 7478006 7478060 -134793384 + (CA)n Simple_repeat Simple_repeat 2 55 0 211 180 10 90 chr9 7478223 7478323 -134793121 + T-rich Low_complexity Low_complexity 1 92 0 319 301 164 44 chr9 7479452 7479794 -134791650 + L2 LINE L2 2465 2847 -467 263 360 0 0 chr9 7479986 7480075 -134791369 - L2 LINE L2 -225 3047 2959 2003 148 0 0 chr9 7480148 7480438 -134791006 - AluSx SINE Alu -22 290 1 213 213 0 0 chr9 7480653 7480700 -134790744 + (TG)n Simple_repeat Simple_repeat 2 48 0 969 170 16 6 chr9 7481362 7481544 -134789900 - L1MD1 LINE L1 -5 6237 6054 1661 162 29 35 chr9 7482322 7482636 -134788808 + AluJo SINE Alu 1 312 0 483 18 0 0 chr9 7483107 7483163 -134788281 + (TCCA)n Simple_repeat Simple_repeat 3 58 0 714 308 106 22 chr9 7483164 7483531 -134787913 + L2 LINE L2 2884 3281 -32 1565 180 10 17 chr9 7484232 7484526 -134786918 - AluJo SINE Alu -20 292 1 1529 178 20 49 chr9 7485527 7485831 -134785613 - AluJb SINE Alu -15 297 3 662 200 0 8 chr9 7486201 7486331 -134785113 + FLAM_A SINE Alu 1 129 -4 1859 166 52 28 chr9 7488412 7488737 -134782707 - MER1B DNA MER1_type -6 333 1 249 98 0 0 chr9 7489775 7489816 -134781628 + (CA)n Simple_repeat Simple_repeat 2 42 0 291 253 27 73 chr9 7489876 7490026 -134781418 + L1ME4a LINE L1 5742 5884 -237 2475 58 0 0 chr9 7490124 7490417 -134781027 - AluY SINE Alu -18 293 1 902 89 7 30 chr9 7490439 7490574 -134780870 - L1PB4 LINE L1 -13 6143 6012 253 284 0 11 chr9 7491341 7491436 -134780008 + L1MEd LINE L1 18 111 -6008 215 321 0 37 chr9 7491518 7491599 -134779845 + MIR SINE MIR 116 193 -69 226 240 53 67 chr9 7491975 7492050 -134779394 + L1MEd LINE L1 549 622 -5497 284 273 121 15 chr9 7492077 7492209 -134779235 + MIR3 SINE MIR 31 176 -32 2045 133 0 7 chr9 7492964 7493296 -134778148 + AluSx SINE Alu 1 312 0 32 43 0 0 chr9 7493787 7493833 -134777611 + AT_rich Low_complexity Low_complexity 1 46 0 25 31 0 0 chr9 7494630 7494662 -134776782 + AT_rich Low_complexity Low_complexity 1 32 0 201 219 24 0 chr9 7495161 7495202 -134776242 - MIR SINE MIR -151 111 70 2084 130 0 0 chr9 7496038 7496331 -134775113 - AluSx SINE Alu -13 299 7 533 215 75 5 chr9 7496459 7496645 -134774799 - L1MA7 LINE L1 0 6291 6093 398 339 0 8 chr9 7496888 7497009 -134774435 - MIR SINE MIR -122 140 21 1862 145 0 17 chr9 7497020 7497310 -134774134 - AluSx SINE Alu -27 285 1 22 0 0 0 chr9 7497460 7497482 -134773962 + AT_rich Low_complexity Low_complexity 1 22 0 2833 119 54 29 chr9 7499020 7499298 -134772146 - LTR22B LTR ERVK 0 492 195 2420 80 3 0 chr9 7499298 7499597 -134771847 + AluSq SINE Alu 1 300 -13 2833 119 54 29 chr9 7499597 7499798 -134771646 - LTR22B LTR ERVK -296 196 1 27 0 0 0 chr9 7501076 7501103 -134770341 + AT_rich Low_complexity Low_complexity 1 27 0 568 181 49 62 chr9 7501798 7502041 -134769403 - Charlie1 DNA MER1_type 0 2761 2522 1504 209 16 16 chr9 7502049 7502370 -134769074 + L1M3e LINE L1 2 322 -6708 2538 238 39 62 chr9 7502370 7503416 -134768028 + L1M3e LINE L1 1216 2245 -4792 1511 270 109 10 chr9 7503417 7503913 -134767531 - Charlie1a DNA MER1_type -907 548 4 1929 163 116 2 chr9 7503930 7504334 -134767110 + Tigger2 DNA MER2_type 1 450 -2268 2007 142 10 10 chr9 7504908 7505217 -134766227 + AluSq SINE Alu 3 311 -2 191 286 14 43 chr9 7505283 7505353 -134766091 + L2 LINE L2 3201 3268 -4 1317 188 7 44 chr9 7506215 7506486 -134764958 - AluJo SINE Alu -14 298 38 306 0 0 0 chr9 7509060 7509094 -134762350 + (CA)n Simple_repeat Simple_repeat 2 35 0 39 50 0 0 chr9 7509625 7509685 -134761759 + AT_rich Low_complexity Low_complexity 1 60 0 2434 82 0 0 chr9 7510264 7510567 -134760877 - AluY SINE Alu -8 303 1 2124 127 3 0 chr9 7510567 7510866 -134760578 - AluSx SINE Alu -11 301 1 1949 164 0 3 chr9 7511077 7511376 -134760068 - AluJo SINE Alu -13 299 2 22 35 0 0 chr9 7511621 7511650 -134759794 + AT_rich Low_complexity Low_complexity 1 29 0 1664 170 112 3 chr9 7512190 7512502 -134758942 - MER7A DNA MER2_type 0 346 3 22 0 0 0 chr9 7514700 7514722 -134756722 + AT_rich Low_complexity Low_complexity 1 22 0 1710 137 19 55 chr9 7514723 7515102 -134756342 - L1MA2 LINE L1 -3 7720 7356 301 70 47 0 chr9 7515112 7515155 -134756289 - L1M LINE L1 -895 6826 6782 189 0 0 0 chr9 7515169 7515190 -134756254 + (TG)n Simple_repeat Simple_repeat 2 22 0 14867 170 24 16 chr9 7515194 7515205 -134756239 - L1MA2 LINE L1 -762 6803 6794 2221 83 24 0 chr9 7515205 7515493 -134755951 - AluSx SINE Alu -17 295 1 14867 170 24 16 chr9 7515493 7518390 -134753054 - L1MA2 LINE L1 -771 6794 3921 5598 39 3 0 chr9 7518390 7519064 -134752380 - L1PA4 LINE L1 -8 6147 5472 14867 170 24 16 chr9 7519064 7519971 -134751473 - L1MA2 LINE L1 -3644 3921 3022 2033 142 3 3 chr9 7519971 7520282 -134751162 + AluSx SINE Alu 1 311 -1 14867 170 24 16 chr9 7520282 7523174 -134748270 - L1MA2 LINE L1 -4543 3022 19 39 60 0 0 chr9 7523594 7523661 -134747783 + AT_rich Low_complexity Low_complexity 1 67 0 1638 156 28 0 chr9 7524404 7524693 -134746751 + L1MC1 LINE L1 6037 6333 0 402 57 0 0 chr9 7525171 7525224 -134746220 + (TTTA)n Simple_repeat Simple_repeat 4 56 0 2053 117 7 0 chr9 7525226 7525509 -134745935 - AluSx SINE Alu -27 285 1 213 196 0 0 chr9 7525652 7525698 -134745746 + (TA)n Simple_repeat Simple_repeat 1 46 0 222 37 0 0 chr9 7525725 7525752 -134745692 + (TG)n Simple_repeat Simple_repeat 2 28 0 226 306 68 41 chr9 7526648 7526795 -134744649 - MIR3 SINE MIR -46 162 12 23 0 0 0 chr9 7527191 7527214 -134744230 + AT_rich Low_complexity Low_complexity 1 23 0 5483 140 45 19 chr9 7528130 7529049 -134742395 - L1MA5A LINE L1 0 6297 5403 1874 169 0 6 chr9 7529049 7529363 -134742081 - AluJb SINE Alu 0 312 1 5483 140 45 19 chr9 7529363 7530280 -134741164 - L1MA5A LINE L1 -894 5403 4408 253 224 198 35 chr9 7530808 7530924 -134740520 + L2 LINE L2 3179 3313 0 259 370 8 0 chr9 7532716 7532835 -134738609 - L1MC/D LINE L1 -2153 6450 6331 241 241 36 36 chr9 7533142 7533254 -134738190 - L1MC/D LINE L1 -1070 5871 5760 512 278 159 48 chr9 7533335 7533536 -134737908 - L1MC/D LINE L1 -5082 1849 1672 2205 155 63 17 chr9 7533536 7533950 -134737494 - Tigger2a DNA MER2_type 0 434 2 512 278 159 48 chr9 7533950 7534100 -134737344 - L1MC/D LINE L1 -5259 1672 1459 544 223 107 22 chr9 7534100 7534324 -134737120 - L1MEd LINE L1 -4313 1997 1755 342 169 0 0 chr9 7534345 7534410 -134737034 + CT-rich Low_complexity Low_complexity 4 68 0 423 92 0 0 chr9 7534419 7534484 -134736960 + (TG)n Simple_repeat Simple_repeat 2 66 0 937 305 45 34 chr9 7534484 7535135 -134736309 - L1MEd LINE L1 -4555 1755 1056 2011 136 33 9 chr9 7535143 7535475 -134735969 - MER2 DNA MER2_type -5 340 1 449 291 58 16 chr9 7535564 7535822 -134735622 - L1MC/D LINE L1 -5041 1382 1114 404 265 68 0 chr9 7536201 7536318 -134735126 - MIR SINE MIR -98 164 40 530 280 108 11 chr9 7536914 7537100 -134734344 + MER58A DNA MER1_type 21 224 0 290 370 62 0 chr9 7537101 7537263 -134734181 + MIR SINE MIR 80 251 -11 196 320 144 49 chr9 7538000 7538284 -134733160 - L2 LINE L2 -2 3311 3001 639 303 213 15 chr9 7538479 7539086 -134732358 - L2 LINE L2 -684 2630 1904 338 300 86 7 chr9 7541668 7541808 -134729636 + Charlie8 DNA MER1_type 7 157 -2260 232 340 186 16 chr9 7542227 7542474 -134728970 + L3b LINE CR1 1284 1572 -11 496 183 8 11 chr9 7545913 7546061 -134725383 - MER20 DNA MER1_type -9 210 3 218 191 0 0 chr9 7546404 7546446 -134724998 + L2 LINE L2 3271 3312 -1 438 36 0 0 chr9 7546912 7546968 -134724476 + (GA)n Simple_repeat Simple_repeat 2 57 0 200 200 0 0 chr9 7548365 7548400 -134723044 + CT-rich Low_complexity Low_complexity 2 36 0 1595 114 0 4 chr9 7549030 7549258 -134722186 + AluSc SINE Alu 76 302 -7 251 229 383 11 chr9 7551491 7551666 -134719778 + MIR SINE MIR 21 260 -2 1462 254 34 23 chr9 7552356 7552402 -134719042 + Charlie1 DNA MER1_type 1428 1472 -1289 409 288 54 44 chr9 7552402 7552607 -134718837 + MER63A DNA MER1_type 4 210 0 1462 254 34 23 chr9 7552607 7553000 -134718444 + Charlie1 DNA MER1_type 1472 1872 -889 950 184 40 10 chr9 7552997 7553198 -134718246 + Charlie1 DNA MER1_type 1902 2108 -653 * 694 163 0 0 chr9 7553203 7553326 -134718118 - AluJo SINE Alu -7 305 183 * 721 201 0 14 chr9 7553317 7553461 -134717983 - AluJo SINE Alu -170 142 1 2587 164 93 21 chr9 7553469 7554074 -134717370 + Charlie1 DNA MER1_type 2114 2761 0 2231 92 0 0 chr9 7554505 7554838 -134716606 - AluSc SINE Alu 0 333 1 318 249 46 136 chr9 7554917 7555330 -134716114 - HAL1 LINE L1 -29 2478 2103 323 252 67 17 chr9 7555332 7555451 -134715993 - HAL1 LINE L1 -540 1967 1843 * 409 278 112 0 chr9 7555441 7555610 -134715834 - HAL1 LINE L1 -1602 905 718 1366 280 86 39 chr9 7555616 7556037 -134715407 - HAL1 LINE L1 -1828 679 279 2220 93 0 3 chr9 7556037 7556326 -134715118 - AluY SINE Alu -23 288 1 1366 280 86 39 chr9 7556326 7556432 -134715012 - HAL1 LINE L1 -2228 279 179 1681 194 13 7 chr9 7556432 7556742 -134714702 - AluJb SINE Alu 0 312 1 1366 280 86 39 chr9 7556742 7556855 -134714589 - HAL1 LINE L1 -2328 179 8 27 0 0 0 chr9 7557293 7557320 -134714124 + AT_rich Low_complexity Low_complexity 1 27 0 236 167 0 21 chr9 7557574 7557622 -134713822 - L2 LINE L2 0 3313 3267 449 230 40 55 chr9 7558023 7558223 -134713221 + Charlie5 DNA MER1_type 1 197 -2415 812 180 64 21 chr9 7558227 7558460 -134712984 + Charlie5 DNA MER1_type 2352 2594 -18 21 0 0 0 chr9 7561685 7561706 -134709738 + AT_rich Low_complexity Low_complexity 1 21 0 2368 72 0 3 chr9 7561862 7562154 -134709290 - AluY SINE Alu -20 291 1 252 354 53 0 chr9 7562530 7562643 -134708801 + MIR SINE MIR 11 129 -133 2411 102 0 0 chr9 7562742 7563055 -134708389 - AluSq SINE Alu 0 313 1 237 331 55 8 chr9 7563111 7563238 -134708206 + MIR SINE MIR 130 262 0 627 167 0 0 chr9 7563474 7563570 -134707874 + FRAM SINE Alu 51 146 -30 195 42 0 0 chr9 7563572 7563596 -134707848 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 380 283 101 0 chr9 7563596 7563734 -134707710 - L1MD2 LINE L1 -13 6346 6195 404 300 77 15 chr9 7563830 7564157 -134707287 + L1ME1 LINE L1 1868 2214 -4182 4371 247 79 35 chr9 7564166 7565879 -134705565 + L1ME1 LINE L1 3445 5351 -884 318 95 0 0 chr9 7565879 7565921 -134705523 + 5S rRNA rRNA 1 42 -79 4371 247 79 35 chr9 7565921 7566815 -134704629 + L1ME1 LINE L1 5351 6204 -31 501 156 0 0 chr9 7566871 7566961 -134704483 - L1MA6 LINE L1 0 6300 6211 189 238 111 0 chr9 7567358 7567421 -134704023 + MIR SINE MIR 178 247 -15 194 268 61 24 chr9 7567460 7567542 -134703902 - MIR3 SINE MIR -118 90 6 1993 149 0 10 chr9 7568222 7568524 -134702920 - AluSx SINE Alu -12 300 2 1563 182 49 56 chr9 7569365 7569789 -134701655 + MSTB1 LTR MaLR 3 416 -16 478 114 0 0 chr9 7569868 7569938 -134701506 - AluSp/q SINE Alu -10 303 234 219 373 36 0 chr9 7570336 7570446 -134700998 - MIR SINE MIR -146 116 3 195 129 0 0 chr9 7570512 7570543 -134700901 + (CAA)n Simple_repeat Simple_repeat 3 33 0 364 291 68 0 chr9 7571539 7571656 -134699788 - MIR SINE MIR -76 186 62 22 0 0 0 chr9 7572147 7572169 -134699275 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr9 7572236 7572257 -134699187 + AT_rich Low_complexity Low_complexity 1 21 0 567 209 0 9 chr9 7572872 7572987 -134698457 - MER68 LTR ERV1 -6 556 443 1510 140 34 23 chr9 7573000 7573265 -134698179 - MER68 LTR ERV1 -285 277 10 2043 142 7 0 chr9 7573377 7573680 -134697764 - AluSx SINE Alu -7 305 1 531 294 62 5 chr9 7573806 7574017 -134697427 + Charlie2 DNA MER1_type 12 234 -2628 601 266 131 26 chr9 7574158 7574523 -134696921 + MLT1J1 LTR MaLR 16 422 -28 760 151 45 50 chr9 7574574 7574773 -134696671 + Charlie2a DNA MER1_type 1466 1663 -1199 1028 199 50 9 chr9 7577214 7577435 -134694009 - MER46A DNA MER2_type -1 235 6 1686 175 42 9 chr9 7577438 7577769 -134693675 - MER7A DNA MER2_type -6 340 1 333 0 0 0 chr9 7577770 7577807 -134693637 + (TG)n Simple_repeat Simple_repeat 2 38 0 477 260 106 31 chr9 7578242 7578469 -134692975 + MLT1I LTR MaLR 141 384 -25 445 287 154 0 chr9 7578672 7578815 -134692629 + MIR SINE MIR 70 234 -28 512 344 75 40 chr9 7578836 7579234 -134692210 - L2 LINE L2 -10 3262 2851 248 252 207 9 chr9 7579246 7579357 -134692087 + MIR3 SINE MIR 9 141 -67 26 0 0 0 chr9 7579719 7579745 -134691699 + AT_rich Low_complexity Low_complexity 1 26 0 24 32 0 0 chr9 7579900 7579931 -134691513 + AT_rich Low_complexity Low_complexity 1 31 0 2318 87 0 7 chr9 7579932 7580230 -134691214 + AluSx SINE Alu 1 296 -16 254 225 84 0 chr9 7580855 7580926 -134690518 + Charlie2 DNA MER1_type 93 169 -2613 2150 215 116 26 chr9 7581075 7581971 -134689473 + Charlie2 DNA MER1_type 1847 2823 -39 373 243 83 95 chr9 7582012 7582181 -134689263 + MER5A DNA MER1_type 1 167 -22 183 80 0 0 chr9 7582898 7582923 -134688521 + (A)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr9 7585630 7585651 -134685793 + AT_rich Low_complexity Low_complexity 1 21 0 215 238 284 4 chr9 7586251 7586379 -134685065 - MIR SINE MIR -51 211 41 27 0 0 0 chr9 7587421 7587448 -134683996 + AT_rich Low_complexity Low_complexity 1 27 0 604 190 127 16 chr9 7587650 7587873 -134683571 - Charlie4 DNA MER1_type -20 1941 225 307 319 67 22 chr9 7588045 7588180 -134683264 - MIR SINE MIR -15 247 107 353 0 0 0 chr9 7588408 7588452 -134682992 - L1PA3 LINE L1 -3 6152 6109 488 228 62 28 chr9 7593678 7593823 -134677621 + MER5A DNA MER1_type 4 153 -36 201 206 27 27 chr9 7593932 7594005 -134677439 + T-rich Low_complexity Low_complexity 6 78 0 664 198 43 0 chr9 7594178 7594294 -134677150 + FLAM_C SINE Alu 6 126 -17 2231 123 0 0 chr9 7594398 7594698 -134676746 - AluSx SINE Alu -12 300 1 267 152 0 0 chr9 7594804 7594850 -134676594 + T-rich Low_complexity Low_complexity 3 48 0 216 0 0 0 chr9 7596368 7596392 -134675052 + (T)n Simple_repeat Simple_repeat 1 24 0 412 311 76 58 chr9 7597943 7598168 -134673276 + L2 LINE L2 3044 3272 0 316 346 53 0 chr9 7598222 7598355 -134673089 + MER91C DNA MER1_type 1 140 0 444 295 90 13 chr9 7599304 7599460 -134671984 + MIR SINE MIR 14 181 -81 218 167 0 0 chr9 7599501 7599537 -134671907 + (CTG)n Simple_repeat Simple_repeat 3 38 0 268 330 10 10 chr9 7599564 7599661 -134671783 - MIR SINE MIR -108 154 58 31 26 0 0 chr9 7600706 7600744 -134670700 + AT_rich Low_complexity Low_complexity 1 38 0 648 196 0 0 chr9 7600746 7600853 -134670591 - FLAM_C SINE Alu -36 107 1 225 0 0 0 chr9 7601906 7601931 -134669513 + (TTG)n Simple_repeat Simple_repeat 3 27 0 2027 154 0 0 chr9 7602290 7602595 -134668849 - AluJb SINE Alu -7 305 1 22 0 0 0 chr9 7603321 7603343 -134668101 + AT_rich Low_complexity Low_complexity 1 22 0 1319 133 246 13 chr9 7603869 7604170 -134667274 + THE1C LTR MaLR 5 375 0 240 240 80 30 chr9 7604221 7604321 -134667123 - L1MC5 LINE L1 -1162 6799 6695 23 0 0 0 chr9 7604465 7604488 -134666956 + AT_rich Low_complexity Low_complexity 1 23 0 795 202 32 87 chr9 7605202 7605295 -134666149 - MIR SINE MIR -10 252 155 1022 184 108 0 chr9 7605295 7605507 -134665937 + MER46A DNA MER2_type 2 236 0 795 202 32 87 chr9 7605507 7605666 -134665778 - MIR SINE MIR -107 155 14 237 308 88 22 chr9 7605650 7605741 -134665703 - L2 LINE L2 -343 2970 2874 * 299 156 31 0 chr9 7608094 7608158 -134663286 - MER116 DNA Mariner -2 78 13 1524 161 93 21 chr9 7608882 7609173 -134662271 + AluJo SINE Alu 1 312 0 305 321 102 21 chr9 7611011 7611198 -134660246 - MIR SINE MIR 0 262 61 370 208 0 10 chr9 7611584 7611685 -134659759 - L1M4 LINE L1 -1424 4722 4623 378 0 0 0 chr9 7611685 7611727 -134659717 + (CA)n Simple_repeat Simple_repeat 2 43 0 457 219 123 102 chr9 7613410 7613831 -134657613 + Charlie4a DNA MER1_type 59 488 -20 306 343 96 36 chr9 7613919 7614085 -134657359 + L2 LINE L2 3076 3251 -21 253 186 119 51 chr9 7615045 7615163 -134656281 - L1ME4a LINE L1 -46 6075 5950 1615 221 88 24 chr9 7615168 7615666 -134655778 - MLT1H LTR MaLR -19 530 1 2306 119 111 3 chr9 7616086 7616298 -134655146 - MSTA LTR MaLR 0 428 240 243 0 0 0 chr9 7616298 7616325 -134655119 + (CA)n Simple_repeat Simple_repeat 1 27 0 180 0 0 0 chr9 7616324 7616344 -134655100 + (TC)n Simple_repeat Simple_repeat 2 21 0 * 2306 119 111 3 chr9 7616325 7616517 -134654927 - MSTA LTR MaLR -188 240 1 205 271 45 98 chr9 7616536 7616669 -134654775 + MIR SINE MIR 64 189 -73 193 300 118 64 chr9 7617597 7617707 -134653737 - L2 LINE L2 0 3272 3157 327 200 100 20 chr9 7618132 7618232 -134653212 - MIR SINE MIR -82 180 73 215 327 51 63 chr9 7619088 7619342 -134652102 + L2 LINE L2 2726 2976 -338 212 179 0 0 chr9 7620106 7620145 -134651299 - MIR SINE MIR -6 256 218 257 181 0 84 chr9 7620175 7620258 -134651186 - L1M4 LINE L1 -5870 672 597 2021 267 104 27 chr9 7620489 7621071 -134650373 + L1MC4 LINE L1 6459 6995 -1047 387 119 0 0 chr9 7621071 7621138 -134650306 + (TGGA)n Simple_repeat Simple_repeat 4 70 0 2021 267 104 27 chr9 7621138 7621681 -134649763 + L1MC4 LINE L1 6995 7671 -371 239 250 0 0 chr9 7621801 7621849 -134649595 + (CATATA)n Simple_repeat Simple_repeat 4 51 0 281 129 0 165 chr9 7621898 7621983 -134649461 + L1MC4 LINE L1 7960 8030 -12 23 33 0 0 chr9 7621987 7622017 -134649427 + AT_rich Low_complexity Low_complexity 1 30 0 204 304 0 0 chr9 7622066 7622122 -134649322 + T-rich Low_complexity Low_complexity 2 57 0 487 140 131 19 chr9 7622500 7622607 -134648837 - MSTC LTR MaLR -309 119 1 234 91 0 0 chr9 7622829 7622862 -134648582 + (TG)n Simple_repeat Simple_repeat 2 34 0 239 324 39 39 chr9 7623592 7623694 -134647750 - L2 LINE L2 -1 3271 3170 690 277 37 16 chr9 7623809 7624051 -134647393 - MIR SINE MIR 0 262 16 1836 144 0 33 chr9 7624813 7625119 -134646325 - AluJo SINE Alu -8 304 9 605 119 83 0 chr9 7625442 7625551 -134645893 - MLT2B1 LTR ERVL 0 520 403 912 121 0 0 chr9 7625552 7625676 -134645768 - AluJb SINE Alu -188 124 1 369 175 62 0 chr9 7630154 7630234 -134641210 - L1M4 LINE L1 -852 5294 5210 2599 189 32 15 chr9 7630245 7630909 -134640535 - L1ME LINE L1 -369 5797 5123 23 0 0 0 chr9 7631044 7631067 -134640377 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr9 7632127 7632150 -134639294 + AT_rich Low_complexity Low_complexity 1 23 0 1858 163 0 16 chr9 7632591 7632897 -134638547 + AluJo SINE Alu 1 301 -11 1773 183 0 10 chr9 7633048 7633354 -134638090 + AluJb SINE Alu 1 303 -9 1668 147 0 11 chr9 7633860 7634125 -134637319 - MER50 LTR ERV1 -38 696 435 1326 129 26 35 chr9 7634122 7634354 -134637090 - MER50 LTR ERV1 -504 230 1 * 219 158 35 18 chr9 7634376 7634433 -134637011 + T-rich Low_complexity Low_complexity 1 58 0 335 398 8 0 chr9 7634745 7634863 -134636581 - L2 LINE L2 -25 3247 3129 624 310 105 29 chr9 7635044 7635238 -134636206 - L2 LINE L2 -457 2857 2679 1214 126 10 20 chr9 7635238 7635406 -134636038 + MER107 DNA MER1_type 1 168 -29 182 36 0 36 chr9 7635406 7635434 -134636010 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1214 126 10 20 chr9 7635434 7635464 -134635980 + MER107 DNA MER1_type 168 197 0 624 310 105 29 chr9 7635464 7635756 -134635688 - L2 LINE L2 -635 2679 2334 23 0 0 0 chr9 7636154 7636177 -134635267 + AT_rich Low_complexity Low_complexity 1 23 0 654 169 81 16 chr9 7636347 7636471 -134634973 - FLAM_C SINE Alu -10 133 2 189 0 0 0 chr9 7636912 7636933 -134634511 + (TG)n Simple_repeat Simple_repeat 2 22 0 635 152 0 139 chr9 7638165 7638330 -134633114 - FLAM_C SINE Alu 0 143 2 214 258 135 0 chr9 7638528 7638617 -134632827 + MIR3 SINE MIR 85 185 -23 534 310 82 71 chr9 7639574 7640109 -134631335 - L3 LINE CR1 -50 1527 987 848 174 192 11 chr9 7640122 7640398 -134631046 + L1ME4a LINE L1 5793 6118 -3 361 241 167 30 chr9 7641765 7641884 -134629560 + MIR SINE MIR 17 118 -144 4585 175 108 125 chr9 7641884 7643665 -134627779 - MER52A LTR ERV1 0 1755 4 361 241 167 30 chr9 7643665 7643750 -134627694 + MIR SINE MIR 118 238 -24 194 247 130 0 chr9 7644575 7644652 -134626792 + L2 LINE L2 3162 3248 -24 795 161 0 0 chr9 7645087 7645211 -134626233 + FLAM_C SINE Alu 1 124 -9 1407 150 80 36 chr9 7645468 7645742 -134625702 + AluJo SINE Alu 1 286 -26 699 269 50 17 chr9 7646204 7646501 -134624943 + L1ME4a LINE L1 5599 5905 -216 1508 142 46 7 chr9 7646504 7646786 -134624658 + L1MB3 LINE L1 5891 6183 0 894 110 7 29 chr9 7647163 7647299 -134624145 - FLAM_C SINE Alu 0 133 1 232 333 39 16 chr9 7647454 7647583 -134623861 - MARNA DNA Mariner -178 408 277 456 244 59 7 chr9 7647746 7647881 -134623563 - LTR67 LTR ERVL -8 549 408 180 0 0 0 chr9 7648001 7648021 -134623423 + (CTG)n Simple_repeat Simple_repeat 1 20 0 37874 84 14 8 chr9 7649418 7655519 -134615925 - L1PA6 LINE L1 -2 6152 13 647 222 7 15 chr9 7657207 7657342 -134614102 - MER119 DNA MER1_type -1 582 449 396 272 76 0 chr9 7657360 7657452 -134613992 - MER119 DNA MER1_type -478 105 7 309 198 35 78 chr9 7658810 7658926 -134612518 + MIR SINE MIR 102 212 -50 240 86 0 0 chr9 7660499 7660534 -134610910 + (TG)n Simple_repeat Simple_repeat 2 36 0 26 30 0 0 chr9 7660714 7660747 -134610697 + AT_rich Low_complexity Low_complexity 1 33 0 25 51 0 0 chr9 7661202 7661241 -134610203 + AT_rich Low_complexity Low_complexity 1 39 0 501 235 9 17 chr9 7661301 7661416 -134610028 - MER81 DNA DNA 0 114 1 2217 111 0 19 chr9 7661958 7662274 -134609170 + AluSq SINE Alu 1 310 -3 1458 161 96 38 chr9 7662841 7663132 -134608312 + AluJb SINE Alu 1 308 -4 2280 103 7 0 chr9 7663390 7663691 -134607753 - AluSc SINE Alu -6 303 1 1385 114 31 22 chr9 7664878 7665106 -134606338 + MER30 DNA MER1_type 1 230 0 24 0 0 0 chr9 7665887 7665911 -134605533 + AT_rich Low_complexity Low_complexity 1 24 0 200 344 33 0 chr9 7667073 7667163 -134604281 - L2 LINE L2 -6 3266 3174 234 280 122 0 chr9 7669999 7670106 -134601338 - MIR3 SINE MIR -19 189 70 227 176 221 15 chr9 7670161 7670229 -134601215 - MLT1G1 LTR MaLR -36 559 478 279 306 68 27 chr9 7672014 7672161 -134599283 - MIR SINE MIR -13 249 97 1088 167 63 9 chr9 7672331 7672553 -134598891 + L1ME1 LINE L1 5928 6161 -5 249 324 69 6 chr9 7672666 7672839 -134598605 - L2 LINE L2 -1153 2161 1978 1051 284 39 56 chr9 7672980 7673392 -134598052 - L1MDa LINE L1 -6079 461 57 2214 117 10 0 chr9 7673419 7673728 -134597716 - AluSx SINE Alu 0 312 1 2083 184 86 4 chr9 7674129 7674595 -134596849 + MLT1D LTR MaLR 2 505 0 503 196 41 0 chr9 7674784 7674895 -134596549 - L1MB7 LINE L1 0 6174 6055 1533 181 83 0 chr9 7674950 7675226 -134596218 - AluJb SINE Alu -13 299 1 521 180 54 31 chr9 7675867 7676105 -134595339 + MER46C DNA MER2_type 61 338 0 2347 187 20 47 chr9 7676267 7676409 -134595035 + MLT2B2 LTR ERVL 1 145 -370 2728 98 8 0 chr9 7676409 7676768 -134594676 + THE1B LTR MaLR 3 364 0 2347 187 20 47 chr9 7676768 7677118 -134594326 + MLT2B2 LTR ERVL 145 480 -35 248 224 0 0 chr9 7677149 7677207 -134594237 + MLT2B2 LTR ERVL 458 515 0 6422 64 0 3 chr9 7677226 7678008 -134593436 + LTR17 LTR ERV1 1 780 0 312 370 60 10 chr9 7679190 7679390 -134592054 + MIR SINE MIR 21 230 -32 216 0 0 0 chr9 7681054 7681078 -134590366 + (T)n Simple_repeat Simple_repeat 1 24 0 185 283 98 22 chr9 7681148 7681240 -134590204 + L2 LINE L2 3209 3307 -6 595 234 13 19 chr9 7681243 7681397 -134590047 + MIR SINE MIR 88 240 -22 187 220 20 0 chr9 7681428 7681478 -134589966 + L2 LINE L2 3263 3313 0 1606 159 58 18 chr9 7681531 7681808 -134589636 - AluJo SINE Alu -16 296 9 2377 105 48 20 chr9 7681999 7682352 -134589092 - THE1B LTR MaLR -1 363 1 202 292 6 123 chr9 7683224 7683287 -134588157 + MER5B DNA MER1_type 3 72 -106 2237 112 3 0 chr9 7683287 7683590 -134587854 + AluSq SINE Alu 1 304 -9 202 292 6 123 chr9 7683590 7683697 -134587747 + MER5B DNA MER1_type 72 153 -25 306 269 129 65 chr9 7683815 7684001 -134587443 + MIR SINE MIR 20 217 -45 321 292 29 22 chr9 7684246 7684383 -134587061 + HAL1 LINE L1 1 138 -2369 677 228 61 6 chr9 7684412 7684592 -134586852 + HAL1 LINE L1 1562 1751 -756 777 340 54 4 chr9 7684618 7684897 -134586547 + LTR33 LTR ERVL 48 340 -181 1295 239 49 72 chr9 7684917 7685487 -134585957 + HAL1 LINE L1 1836 2392 -115 27 29 0 0 chr9 7686788 7686822 -134584622 + AT_rich Low_complexity Low_complexity 1 34 0 2117 134 0 17 chr9 7686822 7687121 -134584323 - AluSx SINE Alu -16 296 3 268 319 141 16 chr9 7687529 7687714 -134583730 - MIR SINE MIR -8 254 47 681 98 0 0 chr9 7688827 7688939 -134582505 + (TCCA)n Simple_repeat Simple_repeat 3 114 0 1275 84 0 0 chr9 7688953 7689240 -134582204 + (TCCA)n Simple_repeat Simple_repeat 1 287 0 288 354 9 0 chr9 7689242 7689355 -134582089 - L2 LINE L2 -14 3299 3186 406 253 0 0 chr9 7690374 7690473 -134580971 + L1MC/D LINE L1 5706 5804 -2004 2217 282 131 25 chr9 7690577 7692021 -134579423 + L2 LINE L2 1481 3084 -229 382 281 44 0 chr9 7692059 7692173 -134579271 - MER91C DNA MER1_type -17 123 5 1065 52 40 12 chr9 7692214 7692387 -134579057 + (TTTC)n Simple_repeat Simple_repeat 2 179 0 2112 132 7 0 chr9 7692389 7692685 -134578759 - AluSx SINE Alu -14 298 1 323 290 145 0 chr9 7692689 7692820 -134578624 + L2 LINE L2 3164 3313 0 307 303 13 26 chr9 7692842 7692997 -134578447 + HAL1b LINE L1 1189 1341 -7 471 269 140 5 chr9 7693012 7693205 -134578239 + MIR SINE MIR 30 248 -14 213 120 60 0 chr9 7693225 7693275 -134578169 + (TTA)n Simple_repeat Simple_repeat 2 54 0 1793 173 3 3 chr9 7694087 7694371 -134577073 + AluJo SINE Alu 5 288 -24 837 282 50 31 chr9 7696612 7696935 -134574509 + HAL1 LINE L1 11 339 -2168 4842 128 11 7 chr9 7697314 7698059 -134573385 - L1MC1 LINE L1 -1 6332 5585 2101 100 0 4 chr9 7698247 7698518 -134572926 + AluSq SINE Alu 5 274 -39 880 228 46 32 chr9 7698580 7698799 -134572645 - MER58A DNA MER1_type -2 222 1 661 283 79 18 chr9 7698884 7699163 -134572281 - MLT1K LTR MaLR -2 586 291 668 154 30 124 chr9 7699307 7699508 -134571936 + MER5A DNA MER1_type 3 184 -5 232 268 82 10 chr9 7699526 7699623 -134571821 + L2 LINE L2 3121 3224 -48 1614 164 98 14 chr9 7700362 7700648 -134570796 - AluSx SINE Alu -2 310 1 994 199 92 5 chr9 7701058 7701264 -134570180 + MER58A DNA MER1_type 1 224 0 628 152 0 9 chr9 7701382 7701487 -134569957 - AluJ SINE Alu -19 293 190 899 150 0 0 chr9 7701494 7701627 -134569817 - AluJ SINE Alu -179 133 1 403 199 87 132 chr9 7701634 7702079 -134569365 - L1MC4 LINE L1 -1 8041 7549 271 270 22 31 chr9 7704614 7704752 -134566692 - MLT1J LTR MaLR -339 172 110 268 200 125 12 chr9 7704747 7704827 -134566617 - MLT1L LTR MaLR -524 91 3 * 244 184 28 138 chr9 7705596 7705705 -134565739 - MER5A DNA MER1_type -30 159 63 204 278 40 71 chr9 7705772 7705898 -134565546 - MIR SINE MIR -19 243 122 248 75 0 25 chr9 7706306 7706346 -134565098 + (GA)n Simple_repeat Simple_repeat 2 40 0 548 270 56 19 chr9 7706707 7706920 -134564524 - MIR SINE MIR -26 236 17 1565 147 13 63 chr9 7707958 7708258 -134563186 - AluJo SINE Alu -23 289 5 620 284 110 78 chr9 7708866 7709292 -134562152 + LTR67 LTR ERVL 115 554 -3 637 196 0 0 chr9 7709341 7709443 -134562001 + FLAM_C SINE Alu 17 118 -25 270 0 0 0 chr9 7709447 7709477 -134561967 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2216 116 10 0 chr9 7709804 7710097 -134561347 - AluSx SINE Alu -16 296 1 34272 93 55 10 chr9 7710323 7716196 -134555248 + L1PA6 LINE L1 11 6153 -1 195 362 17 9 chr9 7716219 7716335 -134555109 + L2 LINE L2 2942 3058 -214 421 234 81 16 chr9 7716921 7717069 -134554375 + MIR3 SINE MIR 18 157 -51 249 291 13 0 chr9 7717285 7717364 -134554080 + MLT1L LTR MaLR 1 80 -535 249 108 0 0 chr9 7717603 7717640 -134553804 + (TCCC)n Simple_repeat Simple_repeat 4 40 0 461 151 12 0 chr9 7717791 7717877 -134553567 + CT-rich Low_complexity Low_complexity 4 90 0 214 311 0 0 chr9 7718581 7718642 -134552802 - L2 LINE L2 -9 3263 3203 26 0 0 0 chr9 7718649 7718675 -134552769 + AT_rich Low_complexity Low_complexity 1 26 0 875 296 88 21 chr9 7718712 7719185 -134552259 + MLT2F LTR ERVL 1 434 -229 484 237 22 22 chr9 7719203 7719342 -134552102 + MLT2E LTR ERVL 475 613 -15 233 348 8 39 chr9 7719374 7719466 -134551978 + MLT1-int LTR MaLR 292 385 -986 2514 118 6 6 chr9 7719466 7719830 -134551614 - THE1B LTR MaLR 0 364 1 233 348 8 39 chr9 7719830 7719996 -134551448 + MLT1-int LTR MaLR 385 542 -829 24 0 0 0 chr9 7720398 7720422 -134551022 + AT_rich Low_complexity Low_complexity 1 24 0 760 333 68 12 chr9 7720655 7720994 -134550450 + LTR16C LTR ERVL 133 490 -1 186 321 24 0 chr9 7721113 7721197 -134550247 - L2 LINE L2 -315 2957 2872 * 234 333 29 0 chr9 7721188 7721257 -134550187 - MER91A DNA MER1_type -7 189 119 360 310 26 0 chr9 7721303 7721419 -134550025 - MER91A DNA MER1_type -40 156 38 273 263 38 0 chr9 7721821 7721901 -134549543 + MLT1J2 LTR MaLR 67 149 -301 227 196 0 20 chr9 7722573 7722624 -134548820 + (CA)n Simple_repeat Simple_repeat 2 51 0 378 85 0 0 chr9 7723228 7723287 -134548157 + (TG)n Simple_repeat Simple_repeat 1 59 0 229 250 42 90 chr9 7723401 7723545 -134547899 - MIR SINE MIR 0 262 126 696 224 56 28 chr9 7724159 7724338 -134547106 - MIR SINE MIR -66 196 13 1653 177 24 3 chr9 7724417 7724711 -134546733 + AluJb SINE Alu 1 300 -12 204 40 0 0 chr9 7724714 7724739 -134546705 + (CAA)n Simple_repeat Simple_repeat 3 27 0 295 299 120 33 chr9 7725342 7725526 -134545918 - MIR SINE MIR -6 256 57 636 167 0 0 chr9 7725827 7725917 -134545527 - AluJ/FLAM SINE Alu -221 91 2 4640 169 63 3 chr9 7726284 7727171 -134544273 + L1MD1 LINE L1 5292 6231 -11 274 231 0 0 chr9 7727173 7727238 -134544206 + MARNA DNA Mariner 327 391 -195 316 226 0 0 chr9 7727452 7727514 -134543930 - MER21B LTR ERV1 -144 719 658 * 3016 99 39 27 chr9 7727508 7727994 -134543450 - LTR21A LTR ERV1 -13 492 1 1393 188 82 36 chr9 7727996 7728300 -134543144 - MER21B LTR ERV1 -202 661 344 434 194 155 0 chr9 7728362 7728465 -134542979 - MER21B LTR ERV1 -647 216 98 376 127 228 0 chr9 7728490 7728569 -134542875 - FRAM SINE Alu -2 164 68 563 176 0 0 chr9 7728593 7728678 -134542766 - FRAM/FAM SINE Alu -92 84 1 397 210 25 0 chr9 7728697 7728778 -134542666 - MER21B LTR ERV1 -760 103 21 366 309 9 9 chr9 7728941 7729051 -134542393 - MIR SINE MIR -60 148 39 757 271 65 0 chr9 7729790 7730004 -134541440 - MIR SINE MIR -13 249 22 1984 123 3 49 chr9 7730005 7730330 -134541114 - AluJb SINE Alu -2 310 1 265 242 61 53 chr9 7731517 7731649 -134539795 - L2 LINE L2 -23 3290 3158 2446 178 48 85 chr9 7731717 7732256 -134539188 + LTR40a LTR ERVL 1 519 0 306 280 67 16 chr9 7733431 7733624 -134537820 + L1MEd LINE L1 638 840 -5279 1006 196 6 0 chr9 7733682 7733855 -134537589 + L1MDa LINE L1 19 192 -6348 * 2872 181 120 107 chr9 7733853 7734153 -134537291 + L1MDa LINE L1 807 1102 -5438 1725 189 3 7 chr9 7734153 7734454 -134536990 + AluJo SINE Alu 1 300 -12 2872 181 120 107 chr9 7734454 7735169 -134536275 + L1MDa LINE L1 1102 1835 -4705 1077 154 66 0 chr9 7735604 7735786 -134535658 - AluSc SINE Alu -2 307 114 2789 129 35 2 chr9 7735949 7736374 -134535070 + Tigger2 DNA MER2_type 2280 2718 0 207 195 0 24 chr9 7736655 7736681 -134534763 + CT-rich Low_complexity Low_complexity 2 28 -13 2201 108 3 10 chr9 7736681 7736995 -134534449 - AluSx SINE Alu 0 312 1 207 195 0 24 chr9 7736995 7737009 -134534435 + CT-rich Low_complexity Low_complexity 28 41 0 276 261 165 17 chr9 7737320 7737435 -134534009 + MIR3 SINE MIR 13 144 -64 379 299 25 80 chr9 7737492 7737693 -134533751 - MLT1J LTR MaLR -104 407 218 246 65 0 0 chr9 7737722 7737753 -134533691 - MLT1J2 LTR MaLR -356 94 64 257 235 20 0 chr9 7739232 7739283 -134532161 - MLT1K LTR MaLR 0 588 537 2038 141 76 17 chr9 7740063 7740417 -134531027 - THE1C LTR MaLR 0 375 1 242 314 157 0 chr9 7740695 7740816 -134530628 + MIR SINE MIR 11 150 -112 345 229 41 74 chr9 7741093 7741127 -134530317 + MIR SINE MIR 141 175 -87 536 313 44 0 chr9 7741127 7741309 -134530135 + MER91B DNA MER1_type 1 190 0 345 229 41 74 chr9 7741309 7741396 -134530048 + MIR SINE MIR 175 258 -4 256 300 43 21 chr9 7741556 7741696 -134529748 - L1MC4 LINE L1 -15 8027 7885 3362 210 26 41 chr9 7741836 7741890 -134529554 - L1ME2 LINE L1 -10 6154 6101 2286 105 0 0 chr9 7741890 7742185 -134529259 + AluSx SINE Alu 1 295 -17 3362 210 26 41 chr9 7742185 7742254 -134529190 - L1ME2 LINE L1 -63 6101 6032 2232 112 3 3 chr9 7742254 7742566 -134528878 + AluSx SINE Alu 1 312 0 3362 210 26 41 chr9 7742566 7743289 -134528155 - L1ME2 LINE L1 -132 6032 5320 1019 222 48 4 chr9 7743286 7743538 -134527906 - L1MD3 LINE L1 -2 7993 7731 * 1755 145 91 0 chr9 7743547 7743823 -134527621 - AluSx SINE Alu -11 301 1 4419 243 91 52 chr9 7743859 7745837 -134525607 - L1ME2 LINE L1 -830 5316 3273 5930 138 11 18 chr9 7745853 7746752 -134524692 - L1MC1 LINE L1 0 6333 5438 1859 54 0 5 chr9 7746752 7747000 -134524444 - AluY SINE Alu 0 319 73 5930 138 11 18 chr9 7747000 7747054 -134524390 - L1MC1 LINE L1 -895 5438 5385 7055 48 0 9 chr9 7747054 7747910 -134523534 - L1PA5 LINE L1 0 6154 5307 403 285 145 5 chr9 7748011 7748204 -134523240 - L1MC4a LINE L1 -1058 6750 6531 2476 59 0 31 chr9 7748426 7748747 -134522697 - AluY SINE Alu 0 311 1 514 275 8 0 chr9 7748884 7749015 -134522429 - L1MC4a LINE L1 -1902 5906 5775 1066 293 157 5 chr9 7749225 7749666 -134521778 + MLT1L LTR MaLR 86 593 -22 195 42 0 0 chr9 7750169 7750193 -134521251 + (TC)n Simple_repeat Simple_repeat 2 25 0 727 172 19 51 chr9 7750550 7750707 -134520737 + MIR SINE MIR 101 252 -10 229 293 61 0 chr9 7753151 7753233 -134518211 - L3b LINE CR1 -246 1337 1251 204 125 0 0 chr9 7753275 7753307 -134518137 + (TC)n Simple_repeat Simple_repeat 1 32 0 757 235 15 67 chr9 7753320 7753588 -134517856 + L1MC4a LINE L1 5677 5930 -1878 227 304 36 43 chr9 7753638 7753776 -134517668 + HAL1 LINE L1 2357 2493 -14 631 77 0 0 chr9 7754491 7754569 -134516875 + MADE1 DNA Mariner 3 80 0 39640 83 6 7 chr9 7755692 7761848 -134509596 + L1PA6 LINE L1 5 6154 0 37 0 0 0 chr9 7761848 7761885 -134509559 + AT_rich Low_complexity Low_complexity 1 37 0 381 289 72 41 chr9 7761907 7762147 -134509297 + MLT1L LTR MaLR 110 341 -274 2083 145 0 6 chr9 7762147 7762458 -134508986 + AluSx SINE Alu 1 309 -3 381 289 72 41 chr9 7762458 7762609 -134508835 + MLT1L LTR MaLR 341 615 0 184 212 0 0 chr9 7762613 7762646 -134508798 - L2 LINE L2 -97 3216 3184 245 319 55 22 chr9 7763567 7763658 -134507786 + MIR SINE MIR 99 192 -70 204 410 40 29 chr9 7763905 7764078 -134507366 - L2 LINE L2 -16 3256 3082 271 322 144 8 chr9 7764584 7764702 -134506742 - L2 LINE L2 -1 3271 3138 297 68 0 0 chr9 7765919 7765963 -134505481 + (TAGA)n Simple_repeat Simple_repeat 2 45 0 4912 110 36 7 chr9 7766035 7766753 -134504691 + L1PA16 LINE L1 5417 6155 -11 321 125 0 0 chr9 7767823 7767879 -134503565 + (TC)n Simple_repeat Simple_repeat 1 56 0 333 240 165 8 chr9 7768182 7768303 -134503141 - L2 LINE L2 -214 3058 2919 234 255 59 0 chr9 7770365 7770416 -134501028 - MIR3 SINE MIR -52 156 103 200 242 0 32 chr9 7770822 7770884 -134500560 - MIR SINE MIR -6 256 197 814 263 137 26 chr9 7770991 7771379 -134500065 + MLT1J LTR MaLR 7 437 -74 274 208 218 20 chr9 7771460 7771561 -134499883 + MLT1J LTR MaLR 334 454 -57 1367 177 9 79 chr9 7772823 7773139 -134498305 + L1MB5 LINE L1 5881 6174 0 248 274 47 38 chr9 7773154 7773260 -134498184 + L3 LINE CR1 1265 1371 -206 357 267 114 28 chr9 7773276 7773452 -134497992 - MIR SINE MIR -12 250 60 1751 183 26 7 chr9 7773486 7773792 -134497652 - AluJb SINE Alu 0 312 1 180 111 0 0 chr9 7774194 7774221 -134497223 + (GGGA)n Simple_repeat Simple_repeat 4 30 0 1927 191 63 26 chr9 7774364 7774746 -134496698 - MSTD LTR MaLR 0 396 1 236 211 53 0 chr9 7775583 7775640 -134495804 - MLT1K LTR MaLR -7 581 522 370 278 35 0 chr9 7776498 7776613 -134494831 + MLT1L LTR MaLR 368 486 -129 649 341 60 30 chr9 7776713 7777366 -134494078 + L2 LINE L2 2628 3308 -5 241 219 37 0 chr9 7777371 7777453 -134493991 + G-rich Low_complexity Low_complexity 3 87 0 402 261 96 102 chr9 7777566 7777900 -134493544 - MLT1K LTR MaLR -247 341 10 1090 181 48 9 chr9 7778093 7778303 -134493141 + L1PB3 LINE L1 5936 6153 -1 361 277 43 116 chr9 7779755 7780084 -134491360 + L2 LINE L2 2966 3270 -2 288 0 0 0 chr9 7780637 7780669 -134490775 + (CA)n Simple_repeat Simple_repeat 2 33 0 2178 111 0 3 chr9 7781220 7781508 -134489936 + AluSx SINE Alu 11 297 -15 408 208 25 67 chr9 7781968 7782088 -134489356 + L1ME LINE L1 97 211 -5859 1053 277 88 71 chr9 7782153 7782607 -134488837 - MLT1G LTR MaLR -135 460 1 277 229 57 0 chr9 7782608 7782713 -134488731 + L1M4 LINE L1 3047 3157 -2989 9320 223 42 11 chr9 7782762 7784119 -134487325 + L1M4 LINE L1 2930 4394 -1752 2070 121 0 13 chr9 7784119 7784417 -134487027 + AluSc SINE Alu 1 294 -15 9320 223 42 11 chr9 7784417 7785450 -134485994 + L1M4 LINE L1 4394 5394 -752 1580 88 0 0 chr9 7785458 7785684 -134485760 + L1P LINE L1 5081 5306 -840 255 317 0 12 chr9 7785784 7785866 -134485578 - MIR SINE MIR -179 83 3 428 204 41 20 chr9 7786043 7786141 -134485303 - MIR3 SINE MIR -15 193 94 387 316 8 0 chr9 7787113 7787246 -134484198 + MIR SINE MIR 58 191 -71 1724 99 4 21 chr9 7787300 7787533 -134483911 - AluSp SINE Alu -11 302 74 200 132 0 26 chr9 7788442 7788480 -134482964 - MIR SINE MIR -109 153 117 511 250 8 0 chr9 7789356 7789488 -134481956 + L1MB7 LINE L1 6040 6172 -12 2521 76 0 0 chr9 7790242 7790546 -134480898 + AluY SINE Alu 1 304 -7 670 167 67 40 chr9 7790963 7791113 -134480331 + MIR SINE MIR 109 262 0 703 263 123 4 chr9 7791934 7792162 -134479282 - MIR SINE MIR 0 262 8 185 323 56 71 chr9 7792424 7792622 -134478822 - MIR SINE MIR -44 218 24 405 0 0 0 chr9 7793612 7793657 -134477787 + (CA)n Simple_repeat Simple_repeat 2 46 0 390 213 155 32 chr9 7795110 7795265 -134476179 - MIR3 SINE MIR -26 182 9 479 227 123 19 chr9 7795708 7795862 -134475582 - MIR SINE MIR -91 171 2 494 160 0 0 chr9 7796766 7796841 -134474603 - MSTD LTR MaLR -321 75 1 3163 154 11 71 chr9 7796845 7797351 -134474093 + MER6A DNA MER2_type 1 461 -404 1779 143 68 4 chr9 7797351 7797631 -134473813 - AluJo SINE Alu -14 298 1 3163 154 11 71 chr9 7797631 7797768 -134473676 + MER6A DNA MER2_type 461 605 0 769 215 70 0 chr9 7797842 7798000 -134473444 + MER45A DNA AcHobo 9 177 -1 589 225 198 22 chr9 7799236 7799549 -134471895 - MLT1J LTR MaLR -23 488 82 201 39 0 0 chr9 7899834 7899860 -134371584 + (CA)n Simple_repeat Simple_repeat 2 27 0 632 209 19 87 chr9 7900199 7900405 -134371039 - MER4C LTR ERV1 -1 464 273 * 1005 180 56 135 chr9 7900390 7900925 -134370519 - MER4A LTR ERV1 -165 432 1 2029 136 172 5 chr9 7901038 7901405 -134370039 + MSTA LTR MaLR 1 428 0 357 318 101 16 chr9 7901564 7901753 -134369691 + MIR SINE MIR 52 256 -6 2098 171 31 6 chr9 7903287 7903643 -134367801 + MLT1A1 LTR MaLR 1 365 0 195 289 19 0 chr9 7904173 7904225 -134367219 - L2 LINE L2 -1 3271 3219 211 254 104 0 chr9 7904236 7904303 -134367141 + MIR SINE MIR 125 198 -64 555 254 89 46 chr9 7905991 7906417 -134365027 + MLT1L LTR MaLR 126 614 -1 283 316 58 26 chr9 7906815 7907011 -134364433 - MIR SINE MIR -3 259 58 281 228 35 0 chr9 7907047 7907161 -134364283 + (TA)n Simple_repeat Simple_repeat 2 119 0 2262 98 3 0 chr9 7907826 7908113 -134363331 + AluSp SINE Alu 1 288 -25 238 224 0 26 chr9 7908134 7908210 -134363234 + L1MC5 LINE L1 7853 7926 -35 978 206 25 25 chr9 7908265 7908542 -134362902 - Charlie2a DNA MER1_type -1850 1012 736 827 214 291 40 chr9 7908543 7908684 -134362760 - Charlie2a DNA MER1_type -2308 474 370 2024 118 27 3 chr9 7908684 7908980 -134362464 + AluSx SINE Alu 1 303 -9 827 214 291 40 chr9 7908980 7909216 -134362228 - Charlie2a DNA MER1_type -2412 370 2 519 328 6 17 chr9 7909764 7909944 -134361500 + MIR3 SINE MIR 20 197 -11 476 281 98 58 chr9 7912043 7912267 -134359177 - MIR SINE MIR -26 236 4 234 302 0 0 chr9 7914209 7914272 -134357172 - MER5A DNA MER1_type -76 113 51 198 329 75 80 chr9 7914356 7914569 -134356875 + MIR SINE MIR 51 262 0 476 338 87 14 chr9 7915009 7915228 -134356216 + MIR SINE MIR 20 254 -8 410 261 113 20 chr9 7915331 7915526 -134355918 - MIR SINE MIR -48 214 2 210 171 0 0 chr9 7916243 7916284 -134355160 + (ATTG)n Simple_repeat Simple_repeat 2 42 0 477 292 52 7 chr9 7916286 7916440 -134355004 - MIR SINE MIR -7 255 95 612 292 82 26 chr9 7917227 7917460 -134353984 + MLT1H1 LTR MaLR 1 246 -309 258 218 64 0 chr9 7917498 7917576 -134353868 + MLT1H1 LTR MaLR 507 554 -1 467 230 164 24 chr9 7917755 7917920 -134353524 + MIR3 SINE MIR 21 208 0 225 266 28 73 chr9 7918217 7918326 -134353118 + MIR SINE MIR 81 184 -78 471 296 123 0 chr9 7918393 7918572 -134352872 - MIR SINE MIR -13 249 49 234 0 0 0 chr9 7918627 7918653 -134352791 + (TAA)n Simple_repeat Simple_repeat 2 27 0 1037 186 11 6 chr9 7918750 7918927 -134352517 - MER5B DNA MER1_type 0 178 1 317 276 43 17 chr9 7919965 7920081 -134351363 + LTR67 LTR ERVL 429 547 -10 2800 174 49 8 chr9 7920456 7920984 -134350460 - MER44D DNA MER2_type 0 605 1 375 312 55 0 chr9 7921474 7921583 -134349861 + MIR SINE MIR 28 142 -120 25 0 0 0 chr9 7921883 7921908 -134349536 + AT_rich Low_complexity Low_complexity 1 25 0 839 284 29 0 chr9 7922047 7922251 -134349193 + MER63A DNA MER1_type 1 210 0 370 227 40 80 chr9 7922314 7922464 -134348980 + L2 LINE L2 3160 3303 -10 2069 138 3 0 chr9 7923212 7923508 -134347936 - AluSx SINE Alu -13 299 3 189 205 0 0 chr9 7924201 7924240 -134347204 + MIR SINE MIR 158 196 -66 506 296 69 57 chr9 7924980 7925227 -134346217 + MIR SINE MIR 1 250 -12 728 218 18 41 chr9 7926602 7926822 -134344622 - L1MA7 LINE L1 -1 6290 6076 1983 161 70 6 chr9 7927312 7927654 -134343790 - MLT1A1 LTR MaLR -1 364 1 2691 26 7 0 chr9 7928722 7929030 -134342414 - AluY SINE Alu -1 310 1 250 239 30 0 chr9 7929095 7929162 -134342282 + (TA)n Simple_repeat Simple_repeat 1 69 0 214 216 27 0 chr9 7930448 7930522 -134340922 + CT-rich Low_complexity Low_complexity 2 77 0 242 283 54 0 chr9 7930901 7930993 -134340451 - MIR SINE MIR -70 192 96 233 342 149 0 chr9 7931567 7931681 -134339763 - MIR3 SINE MIR -63 145 15 972 169 19 5 chr9 7932532 7932739 -134338705 - L1MA7 LINE L1 -2 6289 6080 1124 151 27 28 chr9 7933034 7933252 -134338192 - L1PB1 LINE L1 -13 6153 5945 1433 122 10 0 chr9 7934270 7934475 -134336969 - L1PB1 LINE L1 0 6151 5945 258 308 65 19 chr9 7934495 7934602 -134336842 + MIR SINE MIR 61 172 -90 439 259 109 23 chr9 7934851 7935025 -134336419 - LTR67 LTR ERVL -13 544 356 305 325 19 57 chr9 7935176 7935333 -134336111 - LTR67 LTR ERVL -355 202 52 210 277 96 0 chr9 7935591 7935685 -134335759 - MIR SINE MIR -80 182 80 475 316 124 10 chr9 7935737 7935930 -134335514 + MIR SINE MIR 7 221 -41 232 200 12 129 chr9 7937500 7937554 -134333890 + MIR SINE MIR 105 147 -115 2262 77 7 0 chr9 7937554 7937840 -134333604 - AluSp SINE Alu -25 288 1 232 200 12 129 chr9 7937840 7937870 -134333574 + MIR SINE MIR 147 179 -83 2272 136 33 25 chr9 7937949 7938310 -134333134 + THE1B LTR MaLR 1 364 0 2522 62 0 7 chr9 7941436 7941745 -134329699 + AluY SINE Alu 1 307 -4 235 214 0 0 chr9 7942337 7942379 -134329065 + L2 LINE L2 3228 3269 -3 1073 90 8 0 chr9 7942987 7943121 -134328323 + AluSq/x SINE Alu 1 135 -177 1827 161 3 3 chr9 7943122 7943413 -134328031 + AluSx SINE Alu 1 291 -21 2683 162 54 35 chr9 7943565 7944140 -134327304 + L1MA7 LINE L1 5607 6192 -99 1725 171 0 51 chr9 7946880 7947196 -134324248 - AluJb SINE Alu -12 300 1 1317 282 44 12 chr9 7947818 7948300 -134323144 + Tigger8 DNA MER2_type 157 653 -13 279 259 16 77 chr9 7949019 7949174 -134322270 + L1ME LINE L1 5465 5605 -516 908 243 62 110 chr9 7949514 7949996 -134321448 + HAL1 LINE L1 16 474 -2033 1058 137 12 6 chr9 7949996 7950164 -134321280 + FRAM SINE Alu 1 169 -7 241 215 169 0 chr9 7950165 7950230 -134321214 + HAL1 LINE L1 466 541 -1966 1210 182 9 18 chr9 7950233 7950453 -134320991 + AluJo SINE Alu 73 290 -22 2625 227 116 136 chr9 7950467 7950896 -134320548 + HAL1 LINE L1 530 966 -1541 189 0 0 0 chr9 7950896 7950917 -134320527 + (TA)n Simple_repeat Simple_repeat 2 22 0 2625 227 116 136 chr9 7950917 7951369 -134320075 + HAL1 LINE L1 966 1426 -1081 764 160 82 82 chr9 7951369 7951483 -134319961 - MER58C DNA MER1_type -2212 208 95 483 18 0 0 chr9 7951483 7951539 -134319905 + (TTGG)n Simple_repeat Simple_repeat 4 59 0 764 160 82 82 chr9 7951539 7951606 -134319838 - MER58C DNA MER1_type -2325 95 24 2669 167 22 31 chr9 7951606 7952096 -134319348 + MER66B LTR ERV1 1 486 0 764 160 82 82 chr9 7952096 7952119 -134319325 - MER58C DNA MER1_type -2395 25 3 2625 227 116 136 chr9 7952119 7952955 -134318489 + HAL1 LINE L1 1426 2414 -93 299 243 40 0 chr9 7953419 7953493 -134317951 + LTR67 LTR ERVL 3 79 -478 2483 132 16 65 chr9 7953545 7953991 -134317453 - Tigger2a DNA MER2_type 0 434 11 329 314 0 8 chr9 7954043 7954164 -134317280 + LTR67 LTR ERVL 438 557 0 182 306 26 119 chr9 7955171 7955364 -134316080 - MIR SINE MIR -70 192 18 21 57 0 0 chr9 7955642 7955677 -134315767 + AT_rich Low_complexity Low_complexity 1 35 0 7236 221 82 19 chr9 7955799 7956067 -134315377 - L1M2 LINE L1 -4523 2686 2436 2083 124 3 0 chr9 7956067 7956378 -134315066 - AluSp SINE Alu 0 312 1 7236 221 82 19 chr9 7956378 7958578 -134312866 - L1M2 LINE L1 -4773 2436 1 199 283 67 0 chr9 7958735 7958795 -134312649 + L2 LINE L2 2191 2254 -1060 740 304 35 4 chr9 7959070 7959297 -134312147 + MIR SINE MIR 25 258 -4 304 286 8 40 chr9 7959733 7959859 -134311585 + GA-rich Low_complexity Low_complexity 3 124 0 377 247 62 84 chr9 7960604 7960782 -134310662 + HAL1 LINE L1 22 195 -2312 287 330 42 62 chr9 7961179 7961485 -134309959 + HAL1 LINE L1 706 1005 -1502 265 342 17 17 chr9 7962430 7962550 -134308894 + MIR SINE MIR 23 142 -120 2866 221 100 12 chr9 7964492 7965270 -134306174 - L1ME1 LINE L1 -3 6163 5317 241 235 15 15 chr9 7966033 7966101 -134305343 + MLT1K LTR MaLR 179 246 -342 2064 160 0 0 chr9 7966438 7966744 -134304700 + AluJo SINE Alu 1 306 -6 232 333 8 79 chr9 7966962 7967088 -134304356 - L3 LINE CR1 -3 1574 1458 389 355 33 16 chr9 7968134 7968376 -134303068 - MIR SINE MIR -14 248 3 404 258 116 37 chr9 7969494 7969684 -134301760 + MIR SINE MIR 56 260 -2 2111 221 61 17 chr9 7970578 7971052 -134300392 + MLT1F LTR MaLR 1 495 -47 2060 221 31 48 chr9 7971053 7971574 -134299870 - LTR40a LTR ERVL 0 519 8 262 235 0 0 chr9 7971580 7971631 -134299813 + MLT1F LTR MaLR 492 542 0 351 276 95 0 chr9 7972650 7972766 -134298678 + MIR SINE MIR 124 250 -12 555 163 0 0 chr9 7972771 7972863 -134298581 - AluJ/FRAM SINE Alu 0 312 221 1521 263 50 19 chr9 7973516 7973992 -134297452 + LTR16C LTR ERVL 1 491 0 345 329 96 0 chr9 7974138 7974284 -134297160 - MIR SINE MIR -66 196 37 1016 251 140 40 chr9 7974375 7974946 -134296498 + L2 LINE L2 2698 3308 -5 329 243 162 0 chr9 7975512 7975648 -134295796 - L1ME4a LINE L1 -3 6118 5961 1046 110 6 0 chr9 7975729 7975893 -134295551 + (TTTCC)n Simple_repeat Simple_repeat 2 166 0 1708 169 22 0 chr9 7975893 7976166 -134295278 - AluJb SINE Alu -33 279 1 272 275 11 0 chr9 7976308 7976399 -134295045 - HsTC2 DNA Tc2 -1007 891 800 482 134 0 0 chr9 7976435 7976502 -134294942 + Tigger2 DNA MER2_type 1 67 -2651 * 570 143 0 10 chr9 7976488 7976586 -134294858 + Tigger2 DNA MER2_type 2267 2363 -355 226 103 0 0 chr9 7976583 7976612 -134294832 + Tigger2 DNA MER2_type 2680 2708 -10 * 648 260 87 5 chr9 7976616 7976824 -134294620 - HsTC2 DNA Tc2 -1138 760 536 336 276 33 59 chr9 7976826 7976978 -134294466 - HsTC2 DNA Tc2 -1750 148 1 21 0 0 0 chr9 7977127 7977148 -134294296 + AT_rich Low_complexity Low_complexity 1 21 0 510 271 25 30 chr9 7977895 7978030 -134293414 - L1ME4a LINE L1 -162 5959 5824 2153 132 47 44 chr9 7978030 7978393 -134293051 + THE1B LTR MaLR 1 364 0 510 271 25 30 chr9 7978393 7978456 -134292988 - L1ME4a LINE L1 -297 5824 5762 2451 68 0 0 chr9 7978945 7979239 -134292205 + AluY SINE Alu 1 294 -17 381 197 13 0 chr9 7980048 7980124 -134291320 + MER58 DNA MER1_type 2343 2419 -1 234 258 33 67 chr9 7980932 7981052 -134290392 - L1MC4 LINE L1 -116 7926 7811 295 271 21 21 chr9 7981181 7981277 -134290167 - L1MC4 LINE L1 -368 7674 7579 2531 230 17 35 chr9 7981295 7981930 -134289514 - L1ME1 LINE L1 -4 6162 5539 253 220 68 0 chr9 7981973 7982032 -134289412 - L1ME LINE L1 -6002 68 6 234 307 53 0 chr9 7982105 7982180 -134289264 - MIR3 SINE MIR -14 194 116 346 236 42 0 chr9 7982203 7982275 -134289169 - L2 LINE L2 -4 3268 3194 294 254 0 0 chr9 7983674 7983741 -134287703 + MIR3 SINE MIR 137 203 -5 27 49 0 0 chr9 7984430 7984471 -134286973 + AT_rich Low_complexity Low_complexity 1 41 0 632 255 21 32 chr9 7984660 7984848 -134286596 + MIR SINE MIR 2 187 -75 23 33 0 0 chr9 7987182 7987212 -134284232 + AT_rich Low_complexity Low_complexity 1 30 0 431 193 0 23 chr9 7988157 7988245 -134283199 + MIR SINE MIR 174 259 -3 189 0 0 0 chr9 7988552 7988573 -134282871 + (CA)n Simple_repeat Simple_repeat 1 21 0 216 111 0 0 chr9 7989987 7990023 -134281421 + (CA)n Simple_repeat Simple_repeat 1 36 0 1323 261 68 38 chr9 7990386 7990857 -134280587 + LTR16C LTR ERVL 1 485 -6 203 316 52 44 chr9 7991069 7991126 -134280318 + L2 LINE L2 3171 3226 -87 2622 52 7 0 chr9 7991126 7991435 -134280009 - AluY SINE Alu 0 311 1 203 316 52 44 chr9 7991435 7991513 -134279931 + L2 LINE L2 3226 3307 -6 1629 169 96 37 chr9 7992400 7992754 -134278690 + THE1C LTR MaLR 1 375 0 1030 273 101 21 chr9 7994128 7994505 -134276939 - MLT1I LTR MaLR -2 407 1 2559 65 0 0 chr9 7994547 7994856 -134276588 + AluY SINE Alu 3 311 0 382 294 48 14 chr9 7994990 7995166 -134276278 + MIR SINE MIR 42 221 -41 261 244 142 47 chr9 7995763 7995890 -134275554 + Charlie8 DNA MER1_type 87 225 -2192 259 306 102 23 chr9 7996297 7996455 -134274989 - MIR SINE MIR -63 145 1 198 333 0 26 chr9 7996714 7996792 -134274652 + L2 LINE L2 3197 3272 0 359 297 40 14 chr9 7997628 7997904 -134273540 - L1MDb LINE L1 -5023 1921 1639 7993 170 8 9 chr9 7997929 8000136 -134271308 + L1PA14 LINE L1 3923 6149 -12 24 0 0 0 chr9 8000138 8000162 -134271282 + AT_rich Low_complexity Low_complexity 1 24 0 343 231 27 150 chr9 8000238 8000498 -134270946 - L1MDb LINE L1 -5082 1341 1114 810 314 47 38 chr9 8000814 8001266 -134270178 - L1MDb LINE L1 -5944 479 24 324 290 43 48 chr9 8001269 8001476 -134269968 - L1ME LINE L1 -307 5814 5609 * 424 169 7 115 chr9 8001472 8001620 -134269824 + L1ME3A LINE L1 6017 6148 -22 24 0 0 0 chr9 8001715 8001739 -134269705 + AT_rich Low_complexity Low_complexity 1 24 0 366 331 44 7 chr9 8002995 8003131 -134268313 - MIR3 SINE MIR -23 185 45 1474 194 55 73 chr9 8003195 8003576 -134267868 - MLT1A2 LTR MaLR 0 374 1 5805 129 40 2 chr9 8004361 8005893 -134265551 + L1PA15 LINE L1 4594 6159 -6 2545 74 0 0 chr9 8006333 8006644 -134264800 + AluY SINE Alu 1 311 0 4797 118 43 3 chr9 8006814 8007515 -134263929 - L1PA16 LINE L1 -9 6472 5744 3088 220 126 12 chr9 8007516 8007528 -134263916 - L1PA16 LINE L1 -813 5648 5639 2141 104 27 7 chr9 8007528 8007827 -134263617 - AluSx SINE Alu -7 305 1 3088 220 126 12 chr9 8007827 8008741 -134262703 - L1PA16 LINE L1 -822 5639 4616 * 11503 152 20 20 chr9 8008729 8010056 -134261388 - L1MA3 LINE L1 -2 7722 6397 2542 48 0 10 chr9 8010056 8010368 -134261076 - AluY SINE Alu 0 311 3 11503 152 20 20 chr9 8010368 8012233 -134259211 - L1MA3 LINE L1 -1327 6397 4527 750 129 0 0 chr9 8012249 8012365 -134259079 - L1PA16 LINE L1 -1829 4632 4517 * 4388 129 2 8 chr9 8012363 8013005 -134258439 - L1PA16 LINE L1 -4757 1118 481 1817 167 69 3 chr9 8013009 8013326 -134258118 - L1PA16 LINE L1 -5536 339 2 20213 160 32 24 chr9 8013326 8016948 -134254496 - L1MA3 LINE L1 -3898 3667 16 3327 199 45 8 chr9 8016954 8017663 -134253781 - L1 LINE L1 -1817 4329 3595 * 12312 191 33 20 chr9 8017632 8020805 -134250639 - L1PA15-16 LINE L1 -3368 3481 716 2366 161 97 11 chr9 8020819 8021273 -134250171 - LTR49 LTR ERV1 -102 493 1 3110 77 41 10 chr9 8021598 8022015 -134249429 - L1PA11 LINE L1 -2 6172 5743 320 261 109 0 chr9 8022565 8022657 -134248787 + MIR SINE MIR 156 257 -5 3092 196 56 59 chr9 8023154 8023883 -134247561 - LTR8A LTR ERV1 0 727 1 349 262 10 48 chr9 8025351 8025454 -134245990 + MIR SINE MIR 9 107 -155 1364 315 118 29 chr9 8026106 8026816 -134244628 + HERVL LTR ERVL 2937 3725 -1929 2850 7 0 0 chr9 8026816 8027120 -134244324 + AluYb8 SINE Alu 1 304 -14 1364 315 118 29 chr9 8027120 8027199 -134244245 + HERVL LTR ERVL 3725 3796 -1858 1542 331 43 50 chr9 8027281 8028274 -134243170 + HERVL LTR ERVL 4050 5035 -729 1023 231 51 121 chr9 8028655 8029057 -134242387 + LTR16C LTR ERVL 1 357 -134 2769 117 6 80 chr9 8029057 8029546 -134241898 - MLT2A2 LTR ERVL 0 453 1 1023 231 51 121 chr9 8029546 8029673 -134241771 + LTR16C LTR ERVL 357 491 0 701 240 34 43 chr9 8029832 8030040 -134241404 - MER58C DNA MER1_type 0 215 10 2562 46 3 0 chr9 8031690 8031997 -134239447 + AluY SINE Alu 1 308 -3 180 0 0 0 chr9 8031997 8032017 -134239427 + (TA)n Simple_repeat Simple_repeat 2 21 0 336 355 51 0 chr9 8032055 8032193 -134239251 + L2 LINE L2 2917 3061 -211 1245 216 42 45 chr9 8032193 8032615 -134238829 - MER66A LTR ERV1 0 525 165 389 295 85 123 chr9 8032835 8033177 -134238267 + MER102b DNA MER1_type 13 341 0 2240 110 0 0 chr9 8033361 8033651 -134237793 - AluSx SINE Alu -22 290 1 218 246 18 18 chr9 8033786 8033843 -134237601 + L2 LINE L2 3179 3235 -78 240 35 0 0 chr9 8033890 8033919 -134237525 + (TA)n Simple_repeat Simple_repeat 2 30 0 228 35 0 0 chr9 8033918 8033947 -134237497 + (TG)n Simple_repeat Simple_repeat 2 30 0 * 1166 148 0 48 chr9 8033953 8034182 -134237262 - L1PA16 LINE L1 -9 6157 5940 827 211 54 66 chr9 8034592 8034834 -134236610 + MER8 DNA MER2_type 1 239 0 331 370 126 38 chr9 8035312 8035709 -134235735 - L2 LINE L2 0 3272 2841 334 153 64 38 chr9 8036090 8036199 -134235245 + MER45C DNA AcHobo 82 195 -758 1254 285 76 12 chr9 8036317 8036815 -134234629 + MER45C DNA AcHobo 424 953 0 259 316 0 0 chr9 8037050 8037126 -134234318 + GA-rich Low_complexity Low_complexity 2 77 0 2722 126 7 2 chr9 8038189 8038617 -134232827 - L1PA16 LINE L1 -9 6157 5728 404 297 89 50 chr9 8039152 8039354 -134232090 - MIR SINE MIR -19 243 34 2085 148 0 0 chr9 8039767 8040065 -134231379 + AluSx SINE Alu 3 300 -12 398 249 66 76 chr9 8041119 8041305 -134230139 - MLT1J2 LTR MaLR -6 440 254 241 272 169 7 chr9 8041400 8041536 -134229908 - MLT1J LTR MaLR -346 165 8 348 302 52 0 chr9 8041634 8041750 -134229694 + MIR SINE MIR 141 262 0 28 48 0 0 chr9 8041831 8041873 -134229571 + AT_rich Low_complexity Low_complexity 1 42 0 978 219 25 5 chr9 8042033 8042234 -134229210 - MER58A DNA MER1_type 0 224 20 348 283 87 36 chr9 8042310 8042448 -134228996 - MIR SINE MIR -112 150 6 509 223 0 6 chr9 8044773 8044930 -134226514 + (TA)n Simple_repeat Simple_repeat 1 156 0 259 143 0 0 chr9 8044930 8044972 -134226472 + (TG)n Simple_repeat Simple_repeat 2 43 0 393 248 46 0 chr9 8045036 8045145 -134226299 - MER94 DNA DNA -20 114 1 751 274 139 49 chr9 8046182 8047222 -134224222 + L1MEd LINE L1 599 1831 -745 21 57 0 0 chr9 8047801 8047836 -134223608 + AT_rich Low_complexity Low_complexity 1 35 0 306 344 62 10 chr9 8047938 8048133 -134223311 + L1MEd LINE L1 2033 2237 -4159 510 272 37 28 chr9 8048862 8049079 -134222365 + MLT1J LTR MaLR 293 511 0 434 296 25 49 chr9 8049169 8049331 -134222113 - MIR SINE MIR -73 189 32 892 219 12 0 chr9 8049877 8050046 -134221398 - MER5A DNA MER1_type -2 187 17 199 288 0 34 chr9 8050116 8050175 -134221269 - MIR SINE MIR -90 118 62 189 87 43 22 chr9 8050299 8050345 -134221099 + (CATATA)n Simple_repeat Simple_repeat 2 48 0 1194 215 98 0 chr9 8050728 8051035 -134220409 - MER58B DNA MER1_type 0 341 5 415 266 113 83 chr9 8051195 8051567 -134219877 + L1ME LINE L1 5413 5795 -326 196 250 62 16 chr9 8052653 8052717 -134218727 - MIR3 SINE MIR 0 208 142 208 195 0 172 chr9 8052903 8052990 -134218454 - MIR3 SINE MIR -22 186 115 432 321 85 66 chr9 8054810 8055115 -134216329 - L2 LINE L2 -4 3268 2958 2864 96 69 5 chr9 8056223 8056660 -134214784 - MER4C LTR ERV1 0 465 1 214 303 111 0 chr9 8056758 8056857 -134214587 - MIR SINE MIR -78 184 75 284 306 20 61 chr9 8058360 8058507 -134212937 - L2 LINE L2 0 3313 3173 527 154 107 13 chr9 8059406 8059555 -134211889 + MER53 DNA DNA 1 163 -26 228 67 0 0 chr9 8059565 8059595 -134211849 + (TG)n Simple_repeat Simple_repeat 1 30 0 1639 199 3 3 chr9 8059608 8059890 -134211554 - AluJb SINE Alu -30 282 1 244 232 116 11 chr9 8060268 8060363 -134211081 + MIR SINE MIR 81 185 -77 249 235 76 59 chr9 8060788 8060907 -134210537 - LTR26 LTR ERV1 -16 587 467 858 227 10 141 chr9 8060917 8061335 -134210109 - LTR8A LTR ERV1 -328 399 37 1174 120 0 6 chr9 8062025 8062192 -134209252 + AluSg/x SINE Alu 126 291 -21 955 192 34 14 chr9 8062766 8062974 -134208470 - MER20 DNA MER1_type -7 212 1 406 299 32 32 chr9 8064868 8065025 -134206419 - MIR SINE MIR -86 176 20 361 316 54 6 chr9 8065650 8065818 -134205626 + MIR SINE MIR 35 210 -52 306 373 68 43 chr9 8065850 8066172 -134205272 - L2 LINE L2 -8 3264 2935 530 289 59 21 chr9 8067693 8067880 -134203564 + MIR SINE MIR 20 213 -49 318 244 209 0 chr9 8068219 8068334 -134203110 + MIR SINE MIR 60 198 -64 728 277 67 9 chr9 8068353 8068577 -134202867 - MIR SINE MIR -6 256 20 11671 121 19 2 chr9 8068577 8069954 -134201490 + L1PA10 LINE L1 3514 4928 -1240 1873 157 29 0 chr9 8069954 8070235 -134201209 - AluSx SINE Alu -20 292 4 11671 121 19 2 chr9 8070235 8071498 -134199946 + L1PA10 LINE L1 4928 6168 0 676 191 137 12 chr9 8071520 8071541 -134199903 + MER5A DNA MER1_type 1 18 -171 198 71 0 0 chr9 8071541 8071569 -134199875 + (CAG)n Simple_repeat Simple_repeat 2 29 0 676 191 137 12 chr9 8071569 8071715 -134199729 + MER5A DNA MER1_type 18 189 0 404 245 0 0 chr9 8071745 8071843 -134199601 + MER58A DNA MER1_type 42 139 0 337 164 30 0 chr9 8071889 8071956 -134199488 + MER58A DNA MER1_type 152 220 -4 244 268 18 18 chr9 8071979 8072035 -134199409 + L2 LINE L2 3210 3265 -7 1887 168 0 10 chr9 8072752 8073055 -134198389 - AluJb SINE Alu -12 300 1 552 292 13 72 chr9 8073218 8073288 -134198156 - LTR33 LTR ERVL -7 514 441 658 216 94 53 chr9 8073288 8073342 -134198102 - MER45A DNA AcHobo -1403 178 128 1678 189 30 7 chr9 8073342 8073643 -134197801 + AluJb SINE Alu 1 308 -4 658 216 94 53 chr9 8073643 8073759 -134197685 - MER45A DNA AcHobo -1453 128 1 552 292 13 72 chr9 8073759 8073924 -134197520 - LTR33 LTR ERVL -80 441 293 283 237 260 0 chr9 8073961 8074134 -134197310 - LTR33 LTR ERVL -300 221 4 1170 220 41 89 chr9 8074425 8074816 -134196628 + MLT1A2 LTR MaLR 3 374 0 185 176 0 0 chr9 8075007 8075041 -134196403 + MIR SINE MIR 106 139 -69 217 326 88 48 chr9 8076032 8076179 -134195265 + L2 LINE L2 2824 2976 -296 240 245 0 0 chr9 8076345 8076394 -134195050 + L2 LINE L2 3222 3270 -2 487 279 118 49 chr9 8076454 8076820 -134194624 - MLT1K LTR MaLR -11 577 187 1158 252 82 52 chr9 8078103 8078674 -134192770 - HsTC2a DNA Tc2 -129 615 28 349 276 92 23 chr9 8078680 8078854 -134192590 - MIR3 SINE MIR -9 199 14 2111 100 0 33 chr9 8079093 8079394 -134192050 + AluY SINE Alu 1 291 -20 216 0 0 0 chr9 8079426 8079450 -134191994 + (TC)n Simple_repeat Simple_repeat 1 24 0 1914 130 0 43 chr9 8081133 8081432 -134190012 - AluSq SINE Alu -27 286 1 2163 241 35 25 chr9 8081432 8081594 -134189850 + MER99 DNA DNA 16 175 -653 2238 85 3 3 chr9 8081594 8081889 -134189555 + AluSg SINE Alu 1 295 -15 2163 241 35 25 chr9 8081889 8082377 -134189067 + MER99 DNA DNA 175 673 -155 5051 181 67 8 chr9 8082383 8083832 -134187612 - L1 LINE L1 -2660 4905 3361 779 222 18 0 chr9 8083835 8084002 -134187442 + MER99 DNA DNA 659 828 0 258 346 0 20 chr9 8086492 8086593 -134184851 - MIR SINE MIR -78 130 32 325 284 166 24 chr9 8086805 8086974 -134184470 - MIR3 SINE MIR -13 195 3 239 343 24 21 chr9 8087586 8087726 -134183718 - MIR SINE MIR -57 151 12 258 320 109 32 chr9 8088396 8088552 -134182892 + MIR SINE MIR 81 248 -14 379 252 91 42 chr9 8090340 8090483 -134180961 - L2 LINE L2 -5 3308 3159 821 267 33 11 chr9 8090484 8090757 -134180687 - LTR16C LTR ERVL 0 491 213 1376 289 64 24 chr9 8090969 8091598 -134179846 - L2 LINE L2 -167 3146 2124 306 274 0 0 chr9 8091606 8091668 -134179776 + MER2 DNA MER2_type 13 74 -271 233 276 52 0 chr9 8092487 8092545 -134178899 + MIR SINE MIR 116 176 -86 339 271 100 87 chr9 8093193 8093422 -134178022 + MIR SINE MIR 7 238 -24 522 308 50 16 chr9 8095184 8095366 -134176078 + MIR3 SINE MIR 12 199 -9 252 250 62 38 chr9 8097882 8097962 -134173482 - L2 LINE L2 0 3313 3232 547 273 44 0 chr9 8099337 8099492 -134171952 + MIR3 SINE MIR 34 198 -10 252 311 46 53 chr9 8099492 8099643 -134171801 + MIR SINE MIR 63 212 -50 246 303 76 43 chr9 8100902 8101084 -134170360 + MIR SINE MIR 37 221 -41 735 249 48 40 chr9 8101537 8101786 -134169658 - MIR SINE MIR 0 262 12 325 162 40 14 chr9 8101801 8101875 -134169569 - MER69 DNA AcHobo -15 2511 2436 429 318 56 47 chr9 8102390 8102623 -134168821 + MIR SINE MIR 2 236 -26 299 252 229 0 chr9 8103296 8103427 -134168017 + MIR SINE MIR 102 262 0 263 206 15 0 chr9 8103533 8103601 -134167843 + MER103 DNA DNA 87 155 -11 503 319 100 11 chr9 8103975 8104335 -134167109 + MLT1J2 LTR MaLR 59 450 0 2339 72 3 3 chr9 8104389 8104682 -134166762 - AluSg SINE Alu -17 293 1 278 158 88 18 chr9 8105499 8105556 -134165888 + L2 LINE L2 3253 3313 0 219 310 0 14 chr9 8105564 8105635 -134165809 - L2 LINE L2 -528 2786 2717 354 244 37 0 chr9 8106961 8107043 -134164401 + LTR33 LTR ERVL 48 132 -389 * 506 295 70 27 chr9 8107033 8107291 -134164153 + LTR33 LTR ERVL 235 503 -18 295 293 69 0 chr9 8107884 8108000 -134163444 - MIR SINE MIR -48 214 91 561 281 9 18 chr9 8108514 8108726 -134162718 - MLT1H LTR MaLR -202 215 29 511 224 179 34 chr9 8110876 8111055 -134160389 - MER3 DNA MER1_type 0 209 5 2378 236 71 35 chr9 8111609 8112587 -134158857 - L1MC4 LINE L1 -258 7784 6772 357 247 13 0 chr9 8112588 8112665 -134158779 - MLT1G1 LTR MaLR -80 515 438 961 176 150 50 chr9 8112673 8113013 -134158431 - MLT1A2 LTR MaLR 0 374 1 423 311 71 40 chr9 8113083 8115308 -134156136 - L1M4 LINE L1 -1684 4462 2170 1808 163 20 7 chr9 8115316 8115611 -134155833 + AluJb SINE Alu 1 299 -13 631 336 52 40 chr9 8115922 8116327 -134155117 - HAL1b LINE L1 -549 799 390 297 0 0 0 chr9 8116465 8116498 -134154946 + (CA)n Simple_repeat Simple_repeat 2 34 0 2280 122 3 6 chr9 8116639 8116991 -134154453 + L1PA8A LINE L1 5781 6131 0 1449 257 27 38 chr9 8116992 8117443 -134154001 - MLT2B1 LTR ERVL -74 446 1 2113 104 0 14 chr9 8117720 8118000 -134153444 - AluSx SINE Alu -36 276 1 840 242 0 10 chr9 8118048 8118242 -134153202 + MER20 DNA MER1_type 28 219 0 431 283 62 36 chr9 8119270 8119436 -134152008 + MER20B DNA MER1_type 45 214 -5 346 333 70 9 chr9 8119451 8119565 -134151879 - MIR SINE MIR -55 153 33 24 0 0 0 chr9 8119763 8119787 -134151657 + AT_rich Low_complexity Low_complexity 1 24 0 275 273 30 0 chr9 8120460 8120526 -134150918 - L2 LINE L2 -1 3312 3245 215 236 36 18 chr9 8120704 8120759 -134150685 - L2 LINE L2 -68 3245 3190 186 236 18 55 chr9 8120808 8120863 -134150581 + MIR SINE MIR 203 255 -7 6553 148 107 17 chr9 8121077 8126430 -134145014 - L1PA8A LINE L1 -319 6127 130 375 105 53 53 chr9 8126431 8126507 -134144937 + MLT2C2 LTR ERVL 389 464 0 418 274 0 0 chr9 8126540 8126635 -134144809 + MIR SINE MIR 84 178 -84 1131 159 5 10 chr9 8127777 8127984 -134143460 + MER2 DNA MER2_type 1 206 -139 227 79 26 0 chr9 8127990 8128028 -134143416 + (TA)n Simple_repeat Simple_repeat 1 39 0 293 277 0 0 chr9 8128034 8128099 -134143345 + MER2 DNA MER2_type 281 345 0 281 250 69 17 chr9 8128257 8128373 -134143071 - MER103 DNA DNA -44 122 1 621 350 64 0 chr9 8128690 8128910 -134142534 + MIR SINE MIR 19 252 -10 453 287 130 14 chr9 8129065 8129288 -134142156 + L2 LINE L2 2811 3059 -254 349 291 87 10 chr9 8129728 8129846 -134141598 - MIR SINE MIR -85 123 21 432 335 58 15 chr9 8130086 8130304 -134141140 + MIR SINE MIR 2 226 -36 305 316 59 37 chr9 8131335 8131471 -134139973 - L2 LINE L2 0 3272 3134 236 389 47 7 chr9 8132189 8132338 -134139106 - L2 LINE L2 -529 2785 2631 646 275 99 30 chr9 8132367 8132793 -134138651 + LTR16A LTR ERVL 3 450 0 360 289 125 19 chr9 8134311 8134519 -134136925 - MIR SINE MIR -4 258 29 248 246 16 0 chr9 8134759 8134820 -134136624 + (CAT)n Simple_repeat Simple_repeat 1 62 0 182 300 117 58 chr9 8136546 8136973 -134134471 + L2 LINE L2 1965 2416 -898 685 284 24 0 chr9 8137058 8137227 -134134217 - MIR SINE MIR -88 174 2 570 320 40 18 chr9 8137549 8137746 -134133698 - MIR SINE MIR -16 246 42 4483 79 7 2 chr9 8137746 8138351 -134133093 + L1PA8A LINE L1 5522 6129 -2 570 320 40 18 chr9 8138351 8138375 -134133069 - MIR SINE MIR -220 42 20 1001 230 168 10 chr9 8139438 8139747 -134131697 - MLT1A2 LTR MaLR -16 358 1 381 329 82 6 chr9 8139822 8139992 -134131452 - MIR SINE MIR -59 203 21 1026 231 14 5 chr9 8139997 8140218 -134131226 + MER58A DNA MER1_type 2 224 0 219 319 43 74 chr9 8141303 8141466 -134129978 + MIR SINE MIR 11 168 -94 375 311 196 5 chr9 8142016 8142225 -134129219 - MIR SINE MIR -12 250 2 384 295 74 65 chr9 8142617 8142755 -134128689 - L2 LINE L2 0 3313 3178 2309 116 0 7 chr9 8142755 8143065 -134128379 + AluSc SINE Alu 1 308 -1 384 295 74 65 chr9 8143065 8143251 -134128193 - L2 LINE L2 -135 3178 2985 690 288 65 92 chr9 8143785 8144168 -134127276 + L1MEd LINE L1 781 1182 -5064 276 30 0 0 chr9 8144168 8144201 -134127243 + (CA)n Simple_repeat Simple_repeat 2 34 0 690 288 65 92 chr9 8144201 8144399 -134127045 + L1MEd LINE L1 1182 1384 -4862 297 0 0 0 chr9 8145095 8145128 -134126316 + (A)n Simple_repeat Simple_repeat 1 33 0 1977 134 46 11 chr9 8145457 8145823 -134125621 + MLT1B LTR MaLR 9 387 -3 260 304 47 27 chr9 8146015 8146163 -134125281 - L2 LINE L2 -815 2499 2349 231 204 0 0 chr9 8148114 8148168 -134123276 + (CA)n Simple_repeat Simple_repeat 2 55 0 1705 189 78 44 chr9 8148508 8148959 -134122485 + MER31B LTR ERV1 1 466 0 369 280 0 0 chr9 8149632 8149725 -134121719 - MER96 DNA MER1_type? 0 175 83 708 294 74 9 chr9 8150439 8150670 -134120774 - MIR SINE MIR -11 251 6 828 246 33 48 chr9 8150851 8151226 -134120218 - L1MD3 LINE L1 0 8042 7687 226 262 0 19 chr9 8151249 8151352 -134120092 + CT-rich Low_complexity Low_complexity 2 102 0 1824 149 58 22 chr9 8151400 8151762 -134119682 + THE1C LTR MaLR 1 375 0 416 255 21 27 chr9 8153212 8153343 -134118101 + MIR SINE MIR 2 134 -74 276 77 0 0 chr9 8154120 8154159 -134117285 + (TG)n Simple_repeat Simple_repeat 2 40 0 239 349 211 0 chr9 8154223 8154441 -134117003 + L2 LINE L2 2641 2904 -410 800 334 85 42 chr9 8154812 8155751 -134115693 + L2 LINE L2 2304 3294 -19 28 29 0 0 chr9 8156667 8156702 -134114742 + AT_rich Low_complexity Low_complexity 1 35 0 907 142 15 0 chr9 8156856 8156990 -134114454 - AluJo SINE Alu -176 136 1 258 250 12 12 chr9 8158727 8158807 -134112637 + MER112 DNA MER1_type 179 258 -2 14877 94 10 10 chr9 8160367 8163383 -134108061 - L1PA8 LINE L1 0 6172 3159 313 288 142 59 chr9 8163805 8164024 -134107420 - L2 LINE L2 0 3313 3077 360 341 49 9 chr9 8164231 8164454 -134106990 - L2 LINE L2 -799 2515 2284 757 175 6 79 chr9 8164470 8164647 -134106797 - MER58A DNA MER1_type -29 195 32 23 33 0 0 chr9 8164895 8164925 -134106519 + AT_rich Low_complexity Low_complexity 1 30 0 198 336 18 62 chr9 8165613 8165726 -134105718 - MIR SINE MIR -59 149 42 216 302 43 86 chr9 8166063 8166179 -134105265 - L2 LINE L2 -15 3257 3147 255 313 15 61 chr9 8166305 8166436 -134105008 + L2 LINE L2 3183 3307 -6 1871 222 49 22 chr9 8166772 8167262 -134104182 + MER87 LTR ERV1 33 535 -6 1404 225 30 35 chr9 8167550 8167919 -134103525 + MLT1A2 LTR MaLR 6 372 -2 374 236 0 22 chr9 8167904 8167993 -134103451 + MER21B LTR ERV1 1 87 -776 * 238 125 62 21 chr9 8168049 8168097 -134103347 + MER21B LTR ERV1 98 147 -716 2481 161 36 78 chr9 8168317 8168871 -134102573 - LTR26B LTR ERV1 0 531 1 2272 86 0 0 chr9 8168919 8169198 -134102246 - AluY SINE Alu -32 279 1 286 284 84 63 chr9 8169427 8169617 -134101827 + MER117 DNA MER1_type 4 197 0 207 111 0 28 chr9 8169642 8169678 -134101766 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 411 285 43 38 chr9 8170255 8170441 -134101003 - MIR3 SINE MIR -3 205 19 1156 196 30 121 chr9 8170617 8171046 -134100398 - MLT2D LTR ERVL -24 390 1 2106 91 66 0 chr9 8172182 8172469 -134098975 - AluY SINE Alu -5 306 1 21 0 0 0 chr9 8172680 8172701 -134098743 + AT_rich Low_complexity Low_complexity 1 21 0 2871 100 83 21 chr9 8172711 8173191 -134098253 - MER9 LTR ERVK -1 510 1 40 0 0 0 chr9 8173338 8173378 -134098066 + AT_rich Low_complexity Low_complexity 1 40 0 272 307 45 23 chr9 8174496 8174584 -134096860 - MIR SINE MIR -89 119 30 23 0 0 0 chr9 8175207 8175230 -134096214 + AT_rich Low_complexity Low_complexity 1 23 0 222 290 54 54 chr9 8175260 8175353 -134096091 - MIR SINE MIR -97 111 19 252 0 0 0 chr9 8175360 8175388 -134096056 + (TG)n Simple_repeat Simple_repeat 2 29 0 340 336 36 0 chr9 8175475 8175615 -134095829 + MIR SINE MIR 112 256 -6 773 176 22 60 chr9 8175700 8175882 -134095562 - MER5B DNA MER1_type 0 178 4 398 270 0 0 chr9 8176248 8176337 -134095107 - L2 LINE L2 0 3272 3184 976 201 54 0 chr9 8177357 8177561 -134093883 - MER20 DNA MER1_type 0 219 5 324 0 0 0 chr9 8177872 8177908 -134093536 + (CA)n Simple_repeat Simple_repeat 2 37 0 245 294 15 0 chr9 8177973 8178041 -134093403 + MIR SINE MIR 71 139 -123 216 0 0 0 chr9 8178041 8178065 -134093379 + (CAT)n Simple_repeat Simple_repeat 2 25 0 622 275 60 63 chr9 8178113 8178477 -134092967 + L1MB1 LINE L1 413 775 -5528 1626 243 47 56 chr9 8178928 8179012 -134092432 + L1MB1 LINE L1 801 884 -5429 2457 136 0 8 chr9 8179012 8179388 -134092056 + THE1C LTR MaLR 1 373 -2 1626 243 47 56 chr9 8179388 8180224 -134091220 + L1MB1 LINE L1 884 1793 -4520 * 3458 232 27 7 chr9 8180213 8181204 -134090240 - L1 LINE L1 -2369 3777 2767 4980 169 30 13 chr9 8181206 8182915 -134088529 + L1PA16 LINE L1 4105 5833 -333 1059 85 0 0 chr9 8182916 8183045 -134088399 + AluSg SINE Alu 5 133 -177 2369 101 7 0 chr9 8183045 8183351 -134088093 + AluSg SINE Alu 1 308 -2 1580 156 25 54 chr9 8183352 8183705 -134087739 + L1PA16 LINE L1 5815 6157 -9 5763 211 56 11 chr9 8184563 8187059 -134084385 + L1MB1 LINE L1 3798 6404 0 429 279 65 13 chr9 8187938 8188092 -134083352 + L2 LINE L2 34 195 -3119 672 278 17 43 chr9 8188111 8188345 -134083099 + L2 LINE L2 3078 3305 -8 299 290 29 88 chr9 8188528 8188969 -134082475 + MLT1I LTR MaLR 1 409 0 220 304 98 29 chr9 8189254 8189356 -134082088 - L2 LINE L2 -2 3311 3203 512 255 180 12 chr9 8189590 8189751 -134081693 - MIR SINE MIR -59 203 16 465 297 24 0 chr9 8190217 8190382 -134081062 - LTR33 LTR ERVL -4 517 349 2102 220 28 18 chr9 8190412 8190912 -134080532 + MLT1D LTR MaLR 1 505 0 900 267 50 21 chr9 8190912 8191193 -134080251 - LTR33 LTR ERVL -232 289 1 351 356 58 14 chr9 8191641 8191849 -134079595 - L2 LINE L2 -214 3058 2842 189 132 0 0 chr9 8192295 8192333 -134079111 + (CA)n Simple_repeat Simple_repeat 2 39 0 200 294 103 66 chr9 8192817 8192953 -134078491 + MIR3 SINE MIR 8 148 -60 279 318 155 0 chr9 8193017 8193165 -134078279 + MIR SINE MIR 51 221 -41 745 142 0 15 chr9 8195586 8195720 -134075724 - FLAM_C SINE Alu 0 133 2 238 276 20 82 chr9 8196587 8196685 -134074759 + L2 LINE L2 1142 1233 -2081 5636 167 13 15 chr9 8196685 8198560 -134072884 - L1PB1 LINE L1 0 6151 4286 2169 134 0 0 chr9 8198560 8198859 -134072585 - AluSq SINE Alu -14 299 1 5636 167 13 15 chr9 8198859 8199126 -134072318 - L1PB1 LINE L1 -1865 4286 4020 1556 326 65 56 chr9 8199132 8199496 -134071948 + L2 LINE L2 1229 1588 -1726 861 149 0 0 chr9 8199496 8199650 -134071794 + L1MA4 LINE L1 6145 6298 -2 1556 326 65 56 chr9 8199650 8200147 -134071297 + L2 LINE L2 1588 2098 -1216 307 39 77 0 chr9 8200389 8200441 -134071003 - L1P1 LINE L1 -710 5445 5390 6180 53 1 1 chr9 8200441 8201257 -134070187 + L1P LINE L1 3469 4284 -1862 271 103 0 0 chr9 8201275 8201314 -134070130 - MLT2D LTR ERVL -48 366 328 216 0 0 0 chr9 8201315 8201339 -134070105 + (CA)n Simple_repeat Simple_repeat 1 24 0 280 135 19 0 chr9 8201345 8201397 -134070047 + MLT2B1 LTR ERVL 468 520 0 227 303 73 28 chr9 8202430 8202539 -134068905 - L2 LINE L2 -220 3052 2939 325 325 56 51 chr9 8202973 8203348 -134068096 + HAL1 LINE L1 4 380 -2127 339 310 92 28 chr9 8203413 8203555 -134067889 + HAL1 LINE L1 480 630 -1877 2297 89 0 7 chr9 8203796 8204088 -134067356 - AluSg SINE Alu -20 290 1 207 221 13 39 chr9 8204152 8204229 -134067215 + A-rich Low_complexity Low_complexity 5 79 0 2241 152 12 14 chr9 8204853 8205273 -134066171 + L1MB3 LINE L1 5757 6175 -8 39 60 0 0 chr9 8205432 8205499 -134065945 + AT_rich Low_complexity Low_complexity 1 67 0 1929 147 17 3 chr9 8205499 8205798 -134065646 + AluSx SINE Alu 1 303 -9 411 285 57 85 chr9 8206991 8207237 -134064207 - MIR3 SINE MIR -18 244 6 1830 160 0 14 chr9 8208483 8208777 -134062667 + AluJb SINE Alu 1 290 -22 857 284 96 11 chr9 8209095 8209458 -134061986 + MLT1I LTR MaLR 1 394 -15 338 288 25 25 chr9 8210932 8211050 -134060394 + MER5A DNA MER1_type 35 152 -37 288 222 28 0 chr9 8211279 8211351 -134060093 + MLT1L LTR MaLR 5 78 -537 242 244 155 37 chr9 8211421 8211598 -134059846 + MLT1J2 LTR MaLR 72 315 -196 313 315 89 98 chr9 8212481 8212808 -134058636 + L2 LINE L2 2930 3253 -19 2774 10 0 0 chr9 8212814 8213117 -134058327 + AluYb8 SINE Alu 16 318 0 23 0 0 0 chr9 8213117 8213140 -134058304 + AT_rich Low_complexity Low_complexity 1 23 0 255 289 22 11 chr9 8213178 8213268 -134058176 - MER103 DNA DNA -75 91 1 395 349 12 41 chr9 8213365 8213466 -134057978 - MIR3 SINE MIR -21 187 92 1732 251 40 41 chr9 8213466 8214021 -134057423 - MLT2B3 LTR ERVL 0 554 1 395 349 12 41 chr9 8214021 8214091 -134057353 - MIR3 SINE MIR -116 92 21 1304 20 0 0 chr9 8214624 8214776 -134056668 + L1PA2 LINE L1 6004 6155 0 1401 137 30 5 chr9 8214786 8215076 -134056368 - MLT2D LTR ERVL -65 349 3 333 280 59 59 chr9 8215225 8215343 -134056101 + MER5B DNA MER1_type 61 178 0 275 281 41 89 chr9 8216289 8216435 -134055009 - MIR3 SINE MIR -66 142 4 * 391 365 97 24 chr9 8216435 8216695 -134054749 + L2 LINE L2 2267 2547 -767 1928 174 10 0 chr9 8217622 8217927 -134053517 - AluJb SINE Alu 0 312 5 228 200 0 20 chr9 8218144 8218194 -134053250 + L2 LINE L2 3219 3267 -5 254 309 9 18 chr9 8218630 8218740 -134052704 + GA-rich Low_complexity Low_complexity 4 112 0 625 274 46 20 chr9 8219726 8219923 -134051521 - MIR SINE MIR 0 262 61 2083 179 3 6 chr9 8219926 8220289 -134051155 + MLT1A1 LTR MaLR 1 362 -3 242 254 32 16 chr9 8220596 8220659 -134050785 + L2 LINE L2 3249 3312 -1 208 353 60 24 chr9 8220739 8220906 -134050538 - L2 LINE L2 -635 2679 2507 195 424 47 0 chr9 8221056 8221141 -134050303 + L2 LINE L2 3121 3209 -63 320 333 42 0 chr9 8222492 8222612 -134048832 + MIR SINE MIR 55 179 -83 304 247 37 12 chr9 8223044 8223125 -134048319 + L2 LINE L2 3185 3267 -5 240 35 0 0 chr9 8223126 8223155 -134048289 + (T)n Simple_repeat Simple_repeat 1 29 0 2530 59 3 3 chr9 8223394 8223700 -134047744 - AluSc SINE Alu 0 309 4 703 57 0 0 chr9 8224047 8224135 -134047309 - AluY SINE Alu -222 88 1 642 305 59 29 chr9 8224804 8225246 -134046198 + L1MEc LINE L1 69 523 -5873 369 0 0 0 chr9 8225258 8225299 -134046145 + (TG)n Simple_repeat Simple_repeat 1 41 0 183 80 0 0 chr9 8225299 8225324 -134046120 + (GA)n Simple_repeat Simple_repeat 2 26 0 374 321 9 0 chr9 8226481 8226587 -134044857 + L2 LINE L2 3188 3294 -19 953 252 20 56 chr9 8226708 8226769 -134044675 - MLT2F LTR ERVL 0 663 601 287 85 21 0 chr9 8226769 8226816 -134044628 + (TG)n Simple_repeat Simple_repeat 2 49 0 953 252 20 56 chr9 8226816 8227060 -134044384 - MLT2F LTR ERVL -62 601 369 1812 141 3 40 chr9 8227143 8227440 -134044004 + AluSq SINE Alu 1 286 -27 425 228 6 64 chr9 8229975 8230100 -134041344 - L1MA10 LINE L1 -2 6332 6218 1764 189 5 39 chr9 8230100 8230482 -134040962 - MLT1A2 LTR MaLR -2 372 4 425 228 6 64 chr9 8230482 8230527 -134040917 - L1MA10 LINE L1 -116 6218 6172 1946 144 31 7 chr9 8230533 8230824 -134040620 - AluSx SINE Alu -14 298 1 1643 207 58 24 chr9 8230836 8231252 -134040192 - L1ME1 LINE L1 -246 5920 5491 4871 234 59 26 chr9 8231261 8232343 -134039101 - L1ME1 LINE L1 -1031 5115 3950 1990 195 29 0 chr9 8232343 8232722 -134038722 - MLT1B LTR MaLR 0 390 1 4871 234 59 26 chr9 8232722 8233392 -134038052 - L1ME1 LINE L1 -2196 3950 3304 5205 260 32 31 chr9 8233578 8235660 -134035784 + L1PA16 LINE L1 1473 3556 -2590 326 100 0 0 chr9 8235660 8235710 -134035734 - MLT2A2 LTR ERVL 0 453 404 374 127 14 0 chr9 8235712 8235783 -134035661 + (TA)n Simple_repeat Simple_repeat 1 72 0 313 187 33 44 chr9 8235785 8235876 -134035568 - L1MC4 LINE L1 -1339 6703 6614 3007 85 15 0 chr9 8235890 8236301 -134035143 - MLT2A2 LTR ERVL -35 418 2 6803 193 31 7 chr9 8236303 8236430 -134035014 + L1PA16 LINE L1 3553 3675 -2491 213 65 0 0 chr9 8236430 8236461 -134034983 + (CAA)n Simple_repeat Simple_repeat 2 32 0 6803 193 31 7 chr9 8236461 8238327 -134033117 + L1PA16 LINE L1 3675 5624 -542 2041 141 7 0 chr9 8238327 8238624 -134032820 + AluSx SINE Alu 1 299 -13 6803 193 31 7 chr9 8238624 8239180 -134032264 + L1PA16 LINE L1 5624 6165 -1 856 222 63 12 chr9 8239398 8239838 -134031606 + MLT1D LTR MaLR 7 505 0 202 349 0 0 chr9 8241312 8241375 -134030069 + L2 LINE L2 3210 3272 0 216 0 0 0 chr9 8242944 8242968 -134028476 + (A)n Simple_repeat Simple_repeat 1 24 0 21 57 0 0 chr9 8243503 8243538 -134027906 + AT_rich Low_complexity Low_complexity 1 35 0 1650 140 118 4 chr9 8243541 8243820 -134027624 + AluSx SINE Alu 1 311 -1 335 349 11 48 chr9 8244149 8244338 -134027106 - MER5A DNA MER1_type -6 183 2 302 206 29 0 chr9 8244489 8244557 -134026887 - Charlie8 DNA MER1_type -1000 1417 1348 227 313 82 41 chr9 8245044 8245191 -134026253 + MIR SINE MIR 96 248 -14 396 0 0 0 chr9 8245555 8245599 -134025845 + (CA)n Simple_repeat Simple_repeat 2 45 0 487 242 8 8 chr9 8246322 8246442 -134025002 + MLT1J1 LTR MaLR 1 120 -326 439 237 96 20 chr9 8246517 8246715 -134024729 + MLT1J1 LTR MaLR 234 446 0 1106 216 82 40 chr9 8246741 8247100 -134024344 - L1M4 LINE L1 -1271 4875 4492 219 36 0 0 chr9 8247100 8247128 -134024316 + (TG)n Simple_repeat Simple_repeat 2 29 0 1106 216 82 40 chr9 8247128 8247218 -134024226 - L1M4 LINE L1 -1654 4492 4407 4083 276 69 10 chr9 8247223 8249107 -134022337 - L1M4 LINE L1 -1880 4266 2271 28925 104 13 26 chr9 8249113 8255216 -134016228 - L1PA7 LINE L1 -1 6468 371 455 279 52 73 chr9 8255198 8255396 -134016048 - L1ME LINE L1 -5608 462 274 * 1960 160 0 0 chr9 8255396 8255702 -134015742 - AluSx SINE Alu -6 306 1 455 279 52 73 chr9 8255702 8255872 -134015572 - L1ME LINE L1 -5796 274 102 539 289 96 56 chr9 8255878 8256328 -134015116 - L1ME LINE L1 -5582 488 21 303 304 188 0 chr9 8256368 8256480 -134014964 - MIR3 SINE MIR -9 199 67 1775 190 16 19 chr9 8257124 8257425 -134014019 + MLT1A1 LTR MaLR 3 304 -61 574 88 0 0 chr9 8257425 8257505 -134013939 - MADE1 DNA Mariner 0 80 1 1775 190 16 19 chr9 8257505 8257567 -134013877 + MLT1A1 LTR MaLR 304 365 0 199 299 104 0 chr9 8258505 8258572 -134012872 + L2 LINE L2 3160 3233 -39 25 0 0 0 chr9 8259206 8259231 -134012213 + AT_rich Low_complexity Low_complexity 1 25 0 270 122 0 0 chr9 8260282 8260323 -134011121 - ERVL LTR ERVL -467 5297 5257 396 0 0 0 chr9 8260355 8260399 -134011045 + (TAGA)n Simple_repeat Simple_repeat 3 46 0 210 250 0 0 chr9 8260407 8260451 -134010993 + (CATA)n Simple_repeat Simple_repeat 2 45 0 1112 272 91 7 chr9 8260492 8260911 -134010533 - MLT2B2 LTR ERVL -61 454 1 4517 125 62 15 chr9 8260930 8261118 -134010326 + MER4E LTR ERV1 1 179 -600 2202 91 14 7 chr9 8261118 8261405 -134010039 + AluSc SINE Alu 1 289 -20 4517 125 62 15 chr9 8261405 8261960 -134009484 + MER4E LTR ERV1 179 779 0 3591 173 21 6 chr9 8261960 8262658 -134008786 - MER50 LTR ERV1 -25 709 1 1891 278 66 12 chr9 8262660 8263053 -134008391 - ERVL LTR ERVL -510 5254 4811 3603 142 23 5 chr9 8263053 8263652 -134007792 - MER4B LTR ERV1 0 610 1 1891 278 66 12 chr9 8263652 8263906 -134007538 - ERVL LTR ERVL -953 4811 4572 1869 233 93 47 chr9 8263959 8264603 -134006841 - ERVL LTR ERVL -1278 4486 3813 182 33 67 0 chr9 8264887 8264917 -134006527 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 1924 163 56 28 chr9 8265212 8265679 -134005765 + MLT2A2 LTR ERVL 1 483 -71 2284 114 0 0 chr9 8265679 8265987 -134005457 - AluSq SINE Alu -5 308 1 1924 163 56 28 chr9 8265987 8266062 -134005382 + MLT2A2 LTR ERVL 483 554 0 1454 264 79 39 chr9 8266077 8266829 -134004615 - ERVL LTR ERVL -2585 2900 2104 1134 302 51 20 chr9 8267016 8267407 -134004037 - MLT2E LTR ERVL -59 569 167 809 175 0 0 chr9 8268106 8268232 -134003212 - FLAM_A SINE Alu -7 126 1 180 321 19 0 chr9 8269078 8269131 -134002313 + L2 LINE L2 3255 3308 -5 547 313 35 31 chr9 8269281 8269508 -134001936 + MIR SINE MIR 8 235 -27 182 289 0 0 chr9 8269478 8269523 -134001921 + L2 LINE L2 3251 3295 -18 * 2080 198 75 13 chr9 8269554 8270019 -134001425 + MLT1D LTR MaLR 12 505 0 2367 317 112 59 chr9 8270635 8271260 -134000184 - L2 LINE L2 0 3313 2723 2131 75 11 4 chr9 8271260 8271526 -133999918 - AluSp SINE Alu -7 306 39 2367 317 112 59 chr9 8271526 8273535 -133997909 - L2 LINE L2 -590 2723 541 239 267 22 0 chr9 8273558 8273648 -133997796 + (TATATG)n Simple_repeat Simple_repeat 4 95 0 333 292 23 46 chr9 8275075 8275205 -133996239 - L2 LINE L2 0 3313 3187 342 0 0 0 chr9 8275686 8275724 -133995720 + (CA)n Simple_repeat Simple_repeat 2 39 0 1984 163 14 0 chr9 8277357 8277712 -133993732 + MER46B DNA MER2_type -1 233 -3 291 303 138 9 chr9 8277716 8277825 -133993619 - MIR SINE MIR -130 132 10 484 305 17 40 chr9 8277867 8278044 -133993400 - MER5B DNA MER1_type -3 175 3 967 321 111 38 chr9 8278094 8278136 -133993308 - L2 LINE L2 -5 3308 3271 1715 155 197 11 chr9 8278136 8278497 -133992947 + MSTA LTR MaLR 1 428 0 9583 118 35 39 chr9 8278499 8280082 -133991362 + MSTA-int LTR MaLR 3 1580 0 1363 176 92 42 chr9 8280082 8280439 -133991005 + THE1C LTR MaLR 1 375 0 967 321 111 38 chr9 8280439 8280841 -133990603 - L2 LINE L2 -41 3272 2827 5857 147 11 31 chr9 8282147 8282945 -133988499 - L1MA3 LINE L1 0 7724 6912 2133 117 3 13 chr9 8282945 8283244 -133988200 - AluSq SINE Alu -8 305 10 5857 147 11 31 chr9 8283244 8284536 -133986908 - L1MA3 LINE L1 -812 6912 5677 19314 167 39 12 chr9 8284544 8286204 -133985240 - L1MA3 LINE L1 -2748 4817 3202 2265 104 0 13 chr9 8286204 8286511 -133984933 + AluSg SINE Alu 1 303 -7 19314 167 39 12 chr9 8286511 8287330 -133984114 - L1MA3 LINE L1 -4363 3202 2406 2397 84 0 10 chr9 8287330 8287640 -133983804 - AluY SINE Alu -4 307 1 19314 167 39 12 chr9 8287640 8289838 -133981606 - L1MA3 LINE L1 -5159 2406 14 369 0 0 0 chr9 8290070 8290111 -133981333 + (GA)n Simple_repeat Simple_repeat 2 42 0 199 318 30 15 chr9 8290305 8290371 -133981073 - L3b LINE CR1 0 1583 1517 2098 138 33 28 chr9 8290391 8290753 -133980691 - THE1B LTR MaLR 0 364 1 384 360 14 7 chr9 8290753 8290892 -133980552 - MIR3 SINE MIR -25 183 44 243 295 84 0 chr9 8292022 8292117 -133979327 + MIR SINE MIR 121 223 -39 242 294 71 0 chr9 8292151 8292236 -133979208 + MIR SINE MIR 121 211 -51 303 264 45 15 chr9 8292311 8292512 -133978932 + MER113 DNA MER1_type? 19 225 -296 480 229 238 0 chr9 8292583 8292705 -133978739 + MER5A DNA MER1_type 9 159 -30 350 245 115 43 chr9 8293891 8294030 -133977414 - MIR3 SINE MIR 0 208 60 1124 265 54 52 chr9 8295800 8296245 -133975199 - MLT1J1 LTR MaLR 0 446 1 340 296 12 0 chr9 8296374 8296455 -133974989 - L2 LINE L2 0 3272 3191 180 0 0 0 chr9 8296780 8296800 -133974644 + (CAA)n Simple_repeat Simple_repeat 2 21 0 293 298 107 16 chr9 8297020 8297141 -133974303 + MIR SINE MIR 17 148 -114 1363 213 24 14 chr9 8297984 8298275 -133973169 - MLT1A1 LTR MaLR -71 294 1 378 237 89 106 chr9 8298671 8298907 -133972537 - MLT1L LTR MaLR -221 394 163 504 196 0 14 chr9 8298997 8299135 -133972309 - LTR37A LTR ERV1 0 426 291 34800 90 18 11 chr9 8299173 8305283 -133966161 + L1PA6 LINE L1 11 6154 0 21 0 0 0 chr9 8305283 8305304 -133966140 + AT_rich Low_complexity Low_complexity 1 21 0 1978 118 38 3 chr9 8305343 8305631 -133965813 + AluSx SINE Alu 1 298 -14 634 221 12 91 chr9 8305640 8305894 -133965550 - LTR37A LTR ERV1 -174 252 19 827 217 27 0 chr9 8306938 8307122 -133964322 - MER5A DNA MER1_type 0 189 1 191 231 183 10 chr9 8308698 8308802 -133962642 - MIR SINE MIR 0 262 141 5923 88 11 16 chr9 8308869 8309767 -133961677 - L1PA12 LINE L1 0 6168 5275 1191 190 86 30 chr9 8309857 8310267 -133961177 + MLT1D LTR MaLR 1 483 -22 242 243 139 56 chr9 8310965 8311109 -133960335 - MIR SINE MIR -26 236 81 572 295 100 33 chr9 8312075 8312404 -133959040 + LTR33 LTR ERVL 167 517 -4 212 167 0 0 chr9 8313835 8313877 -133957567 + A-rich Low_complexity Low_complexity 1 42 0 1047 291 42 9 chr9 8315348 8315681 -133955763 - MLT1I LTR MaLR -3 406 63 222 320 120 10 chr9 8316820 8316920 -133954524 - L2 LINE L2 0 3313 3203 242 217 0 0 chr9 8317642 8317688 -133953756 - MIR SINE MIR -110 152 107 1101 211 52 83 chr9 8318044 8318489 -133952955 + MLT1C LTR MaLR 37 467 0 217 87 22 22 chr9 8318518 8318564 -133952880 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 1822 150 89 29 chr9 8318643 8319023 -133952421 + MER57A LTR ERV1 1 403 0 3062 168 3 43 chr9 8319056 8319585 -133951859 + MLT2B3 LTR ERVL 1 507 -47 1826 171 33 0 chr9 8319585 8319918 -133951526 + MER2 DNA MER2_type 1 344 0 3062 168 3 43 chr9 8319918 8319965 -133951479 + MLT2B3 LTR ERVL 507 554 0 293 216 0 0 chr9 8320116 8320167 -133951277 - MLT2B3 LTR ERVL -175 379 329 430 292 192 9 chr9 8320559 8320778 -133950666 - MIR SINE MIR 0 262 4 200 354 0 97 chr9 8320926 8321039 -133950405 + MIR SINE MIR 19 120 -88 12173 129 27 13 chr9 8322641 8323582 -133947862 - Tigger1 DNA MER2_type 0 2418 1491 2259 115 0 0 chr9 8323582 8323878 -133947566 - AluSg SINE Alu -14 296 1 12173 129 27 13 chr9 8323878 8325228 -133946216 - Tigger1 DNA MER2_type -927 1491 1 379 311 7 40 chr9 8325390 8325538 -133945906 - L2 LINE L2 -4 3309 3167 448 293 66 52 chr9 8325738 8325950 -133945494 - MLT1K LTR MaLR -185 403 189 373 215 45 0 chr9 8326017 8326106 -133945338 - FRAM SINE Alu -72 94 11 229 262 7 117 chr9 8326415 8326560 -133944884 - MIR SINE MIR -27 235 107 196 265 61 92 chr9 8327278 8327376 -133944068 - MIR SINE MIR -48 214 120 914 210 88 46 chr9 8327438 8327767 -133943677 - MER2 DNA MER2_type -1 343 1 275 280 30 10 chr9 8328442 8328542 -133942902 + MLT1J2 LTR MaLR 7 108 -342 403 300 73 0 chr9 8328574 8328684 -133942760 + MLT1J2 LTR MaLR 188 305 -145 223 344 211 0 chr9 8328803 8328893 -133942551 + L2 LINE L2 3142 3250 -22 469 264 76 108 chr9 8329085 8329335 -133942109 - L3 LINE CR1 -933 644 403 314 372 30 12 chr9 8329345 8329509 -133941935 - L3 LINE CR1 -1376 201 35 1555 182 8 54 chr9 8329704 8329838 -133941606 - L1MB5 LINE L1 -2 6172 6033 1757 182 7 3 chr9 8329838 8330134 -133941310 + AluJb SINE Alu 1 297 -15 1555 182 8 54 chr9 8330134 8330331 -133941113 - L1MB5 LINE L1 -141 6033 5857 3460 111 8 2 chr9 8330331 8330838 -133940606 - MER75 DNA T2_type 0 514 5 1555 182 8 54 chr9 8330838 8330874 -133940570 - L1MB5 LINE L1 -317 5857 5821 1401 210 16 11 chr9 8330886 8331311 -133940133 - L1MA8 LINE L1 0 6291 5469 210 189 0 19 chr9 8331313 8331366 -133940078 + T-rich Low_complexity Low_complexity 5 56 0 5954 213 44 22 chr9 8331376 8331431 -133940013 - L1MB5 LINE L1 -697 5477 5425 1491 173 0 0 chr9 8331431 8331662 -133939782 - AluJb SINE Alu -6 306 76 5954 213 44 22 chr9 8331662 8333380 -133938064 - L1MB5 LINE L1 -749 5425 3657 180 276 143 29 chr9 8333703 8333808 -133937636 + L2 LINE L2 3197 3313 0 * 981 271 12 0 chr9 8333805 8334052 -133937392 - MIR SINE MIR 0 262 13 186 267 17 50 chr9 8334723 8334783 -133936661 + L2 LINE L2 2590 2647 -667 464 229 28 28 chr9 8335073 8335217 -133936227 + L1MC4a LINE L1 5826 5969 -1839 358 298 0 11 chr9 8335855 8335949 -133935495 - L2 LINE L2 0 3272 3180 1364 217 26 29 chr9 8336122 8336435 -133935009 - MLT1A1 LTR MaLR -53 312 1 1900 237 60 5 chr9 8336442 8336860 -133934584 - MLT1A1-int LTR MaLR -1 1734 1294 5584 169 30 22 chr9 8337339 8338057 -133933387 + L1PA16 LINE L1 4412 5123 -1043 1841 180 3 0 chr9 8338057 8338368 -133933076 - AluJb SINE Alu 0 312 1 5584 169 30 22 chr9 8338368 8339387 -133932057 + L1PA16 LINE L1 5123 6156 -10 492 304 42 6 chr9 8339483 8339651 -133931793 - MER5B DNA MER1_type -4 174 1 204 413 7 21 chr9 8339850 8339993 -133931451 - MIR SINE MIR -116 146 6 732 256 55 29 chr9 8340141 8340379 -133931065 + MLT1A2 LTR MaLR 131 374 0 261 0 0 0 chr9 8340458 8340487 -133930957 + (A)n Simple_repeat Simple_repeat 1 29 0 477 28 9 255 chr9 8341132 8341238 -133930206 - MADE1 DNA Mariner 0 80 1 485 292 92 33 chr9 8342565 8342805 -133928639 + MIR SINE MIR 9 262 0 208 333 14 0 chr9 8343462 8343531 -133927913 - MIR SINE MIR -113 149 80 286 272 25 0 chr9 8344670 8344751 -133926693 + L2 LINE L2 2998 3080 -192 228 324 109 39 chr9 8344955 8345185 -133926259 + L2 LINE L2 2772 3057 -215 1973 138 41 29 chr9 8346015 8346355 -133925089 + MER2 DNA MER2_type 1 344 0 219 259 55 28 chr9 8346497 8346595 -133924849 + L2 LINE L2 2875 2983 -330 1154 259 95 18 chr9 8346633 8347023 -133924421 - LTR16A LTR ERVL -13 437 18 441 253 140 43 chr9 8347503 8347874 -133923570 - L1ME4a LINE L1 -1 6120 5714 430 313 40 45 chr9 8348039 8348215 -133923229 + MIR3 SINE MIR 33 207 -1 410 290 15 8 chr9 8348848 8348979 -133922465 - MIR SINE MIR -10 252 121 6080 161 46 18 chr9 8349388 8349812 -133921632 + Tigger1 DNA MER2_type 3 413 -2005 2188 96 0 0 chr9 8349812 8350084 -133921360 + AluSg SINE Alu 2 273 -37 222 37 0 0 chr9 8350088 8350115 -133921329 + (CAA)n Simple_repeat Simple_repeat 1 27 0 6080 161 46 18 chr9 8350115 8350769 -133920675 + Tigger1 DNA MER2_type 415 1117 -1301 2541 127 117 5 chr9 8350775 8351193 -133920251 + MER4C LTR ERV1 1 465 0 446 115 0 0 chr9 8351194 8351255 -133920189 + Tigger1 DNA MER2_type 1120 1180 -1238 7753 136 14 19 chr9 8351425 8352042 -133919402 + Tigger1 DNA MER2_type 1187 1795 -623 2191 134 0 0 chr9 8352042 8352347 -133919097 + AluSg SINE Alu 1 305 -5 7753 136 14 19 chr9 8352347 8352968 -133918476 + Tigger1 DNA MER2_type 1795 2418 0 239 257 149 0 chr9 8353371 8353445 -133917999 + L2 LINE L2 3203 3287 -26 7516 49 1 0 chr9 8353779 8355224 -133916220 - L1PA5 LINE L1 0 6154 4700 245 316 70 18 chr9 8355527 8355641 -133915803 - MIR SINE MIR -44 218 99 305 277 79 2 chr9 8356338 8356469 -133914975 + MIR SINE MIR 18 157 -92 639 301 128 38 chr9 8357225 8358069 -133913375 - L2 LINE L2 0 3313 2380 256 260 128 108 chr9 8358200 8358450 -133912994 + MIR SINE MIR 8 262 0 189 295 67 95 chr9 8358566 8358671 -133912773 + MIR SINE MIR 45 146 -62 211 263 147 32 chr9 8358827 8358922 -133912522 - MIR SINE MIR -71 191 86 1345 155 116 5 chr9 8359191 8359487 -133911957 - MER33 DNA MER1_type -4 320 1 195 100 0 0 chr9 8359786 8359816 -133911628 + (TA)n Simple_repeat Simple_repeat 2 31 0 333 270 174 0 chr9 8360760 8360875 -133910569 + MIR SINE MIR 60 194 -68 479 313 44 22 chr9 8362137 8362319 -133909125 + MER5A DNA MER1_type 1 186 -3 268 214 2 2 chr9 8363256 8363321 -133908123 - MLT1L LTR MaLR -137 465 310 219 289 0 0 chr9 8363674 8363719 -133907725 + polypurine Low_complexity Low_complexity 3 47 0 2269 97 0 17 chr9 8364957 8365257 -133906187 + AluY SINE Alu 1 295 -16 318 259 47 0 chr9 8366614 8366699 -133904745 - MIR3 SINE MIR -8 200 112 2044 299 56 19 chr9 8366709 8367691 -133903753 - L2 LINE L2 -1 3312 2298 2329 112 0 0 chr9 8368575 8368880 -133902564 - AluSx SINE Alu -7 305 1 211 294 22 66 chr9 8368974 8369110 -133902334 - MIR SINE MIR -42 220 91 237 263 158 21 chr9 8369692 8369787 -133901657 - MIR SINE MIR -69 193 86 244 207 64 129 chr9 8370034 8370174 -133901270 + MIR SINE MIR 66 196 -66 594 101 13 0 chr9 8370325 8370404 -133901040 - MADE1 DNA Mariner 0 80 1 262 315 130 55 chr9 8370970 8371069 -133900375 + L2 LINE L2 3116 3231 -41 1743 188 94 31 chr9 8371069 8371420 -133900024 - MER93b LTR ERV1 0 373 1 262 315 130 55 chr9 8371420 8371466 -133899978 + L2 LINE L2 3231 3272 0 26 0 0 0 chr9 8371697 8371723 -133899721 + AT_rich Low_complexity Low_complexity 1 26 0 183 299 94 39 chr9 8371941 8372068 -133899376 - MIR SINE MIR -106 156 23 22 0 0 0 chr9 8372488 8372510 -133898934 + GC_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr9 8373201 8373222 -133898222 + AT_rich Low_complexity Low_complexity 1 21 0 280 282 141 43 chr9 8373244 8373407 -133898037 - MIR SINE MIR -64 198 20 271 297 59 20 chr9 8373709 8373810 -133897634 + MIR SINE MIR 110 214 -48 26 88 0 0 chr9 8374262 8374330 -133897114 + AT_rich Low_complexity Low_complexity 1 68 0 217 364 64 16 chr9 8374491 8374648 -133896796 - MIR SINE MIR -39 223 55 231 353 49 8 chr9 8375309 8375431 -133896013 - L3 LINE CR1 -95 1482 1356 2451 158 61 7 chr9 8375496 8375908 -133895536 - Tigger2a DNA MER2_type 0 434 1 180 0 0 0 chr9 8377229 8377249 -133894195 + (T)n Simple_repeat Simple_repeat 1 20 0 1737 204 115 87 chr9 8377495 8378102 -133893342 + MLT1E3 LTR MaLR 1 624 0 326 283 242 0 chr9 8378353 8378473 -133892971 - MIR SINE MIR -25 237 89 722 328 80 48 chr9 8378766 8379770 -133891674 + L2 LINE L2 2233 3272 0 717 195 32 32 chr9 8379837 8379991 -133891453 + MER5A DNA MER1_type 1 154 -35 480 369 5 5 chr9 8380070 8380257 -133891187 + MIR3 SINE MIR 20 206 -2 2411 135 136 131 chr9 8380567 8381176 -133890268 + LTR18B LTR ERVL 3 614 0 969 228 0 0 chr9 8381265 8381445 -133889999 - HERVL18 LTR ERVL -4803 1244 1065 13385 190 16 4 chr9 8381459 8383700 -133887744 + HERVL18 LTR ERVL 68 2335 -3712 5068 166 8 65 chr9 8383757 8384671 -133886773 + HERVL18 LTR ERVL 2718 3579 -2468 8661 156 6 1 chr9 8384673 8386314 -133885130 + HERVL18 LTR ERVL 4394 6047 0 2250 133 154 82 chr9 8386467 8387030 -133884414 + LTR18B LTR ERVL 1 604 -10 10355 136 43 12 chr9 8387273 8387418 -133884026 - Tigger1 DNA MER2_type -94 2324 2185 2369 91 0 13 chr9 8387418 8387725 -133883719 - AluSq SINE Alu -10 303 1 10355 136 43 12 chr9 8387725 8389779 -133881665 - Tigger1 DNA MER2_type -233 2185 1 260 250 9 26 chr9 8390577 8390693 -133880751 + (TA)n Simple_repeat Simple_repeat 1 114 0 396 59 0 0 chr9 8390698 8390749 -133880695 + (TG)n Simple_repeat Simple_repeat 1 51 0 358 329 43 23 chr9 8390751 8390929 -133880515 + MIR3 SINE MIR 10 194 -14 26 0 0 0 chr9 8391184 8391210 -133880234 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr9 8391892 8391913 -133879531 + AT_rich Low_complexity Low_complexity 1 21 0 950 288 107 28 chr9 8392050 8392584 -133878860 - L1MC4a LINE L1 -1926 5882 5307 383 303 139 24 chr9 8392587 8392960 -133878484 - L1MC4a LINE L1 -846 5300 4885 707 158 113 15 chr9 8392982 8393115 -133878329 + FAM SINE Alu 20 165 -20 23 68 0 0 chr9 8393116 8393160 -133878284 + AT_rich Low_complexity Low_complexity 1 44 0 329 169 12 0 chr9 8393179 8393262 -133878182 + (TA)n Simple_repeat Simple_repeat 2 85 0 459 337 56 6 chr9 8393262 8393603 -133877841 - L1MC4a LINE L1 -1301 4845 4488 342 0 0 0 chr9 8393823 8393861 -133877583 + (TG)n Simple_repeat Simple_repeat 1 38 0 313 335 76 38 chr9 8393872 8394162 -133877282 - L1MC4a LINE L1 -2476 3670 3370 1681 199 0 4 chr9 8394168 8394449 -133876995 + AluJo SINE Alu 1 280 -32 1288 244 101 7 chr9 8394536 8394950 -133876494 + MLT1D LTR MaLR 51 503 -2 514 217 45 19 chr9 8395029 8395186 -133876258 - HAL1b LINE L1 -849 499 339 24 53 0 0 chr9 8395767 8395805 -133875639 + AT_rich Low_complexity Low_complexity 1 38 0 596 238 50 30 chr9 8397970 8398172 -133873272 + MLT1I LTR MaLR 204 409 0 269 214 71 0 chr9 8398174 8398244 -133873200 + MER20B DNA MER1_type 4 78 -705 21 71 0 0 chr9 8398469 8398511 -133872933 + AT_rich Low_complexity Low_complexity 1 42 0 231 316 13 26 chr9 8398537 8398613 -133872831 + L2 LINE L2 3190 3264 -8 462 301 38 0 chr9 8400635 8400768 -133870676 - MIR SINE MIR -64 198 61 413 306 108 16 chr9 8400815 8401001 -133870443 - MIR SINE MIR -59 203 1 480 319 32 27 chr9 8401421 8401609 -133869835 - MIR SINE MIR -40 222 34 224 100 25 0 chr9 8402695 8402735 -133868709 + (TTTTTA)n Simple_repeat Simple_repeat 2 42 0 1354 13 0 0 chr9 8402741 8402896 -133868548 - L1PA2 LINE L1 -4 6151 5997 551 29 0 0 chr9 8402896 8402964 -133868480 + L1PA2 LINE L1 5903 5970 -185 21 36 0 0 chr9 8403554 8403582 -133867862 + AT_rich Low_complexity Low_complexity 1 28 0 7071 26 8 0 chr9 8403889 8404757 -133866687 - L1PA5 LINE L1 -5 6149 5275 265 296 35 70 chr9 8405005 8405024 -133866420 - MER5A DNA MER1_type -1 188 170 1361 171 117 107 chr9 8405024 8405122 -133866322 - MSTD LTR MaLR 0 396 300 2342 110 0 3 chr9 8405122 8405432 -133866012 - AluSg SINE Alu -1 309 1 1361 171 117 107 chr9 8405432 8405725 -133865719 - MSTD LTR MaLR -96 300 1 265 296 35 70 chr9 8405725 8405820 -133865624 - MER5A DNA MER1_type -19 170 78 2106 248 55 23 chr9 8405827 8406488 -133864956 + L1ME1 LINE L1 5480 6161 -5 363 44 0 0 chr9 8406615 8406660 -133864784 + (TG)n Simple_repeat Simple_repeat 1 45 0 219 186 0 0 chr9 8406896 8406939 -133864505 + (TATATG)n Simple_repeat Simple_repeat 3 45 0 1436 127 16 65 chr9 8406948 8407255 -133864189 + L1MB8 LINE L1 5887 6178 0 2282 231 49 50 chr9 8407337 8408279 -133863165 + L1MC5 LINE L1 6638 7578 -383 401 258 117 16 chr9 8408420 8408548 -133862896 + MER21B LTR ERV1 363 503 -360 423 194 57 87 chr9 8408580 8408639 -133862805 + L1MC5 LINE L1 7618 7677 -284 2112 134 3 10 chr9 8408639 8408952 -133862492 - AluSx SINE Alu -1 311 1 423 194 57 87 chr9 8408952 8409191 -133862253 + L1MC5 LINE L1 7677 7907 -54 1032 203 219 72 chr9 8410158 8410675 -133860769 + MLT1E1 LTR MaLR 1 654 0 322 205 60 12 chr9 8411427 8411510 -133859934 + MIR3 SINE MIR 87 173 -35 881 282 104 14 chr9 8411643 8412086 -133859358 + L1MC4a LINE L1 5413 5895 -1913 2308 91 3 52 chr9 8412094 8412423 -133859021 + AluSp SINE Alu 1 313 0 280 125 31 0 chr9 8412453 8412517 -133858927 + (TA)n Simple_repeat Simple_repeat 1 66 0 21 71 0 0 chr9 8412782 8412824 -133858620 + AT_rich Low_complexity Low_complexity 1 42 0 615 298 8 55 chr9 8413380 8413618 -133857826 + MIR SINE MIR 20 246 -16 550 220 143 14 chr9 8413612 8413796 -133857648 - MIR SINE MIR -19 243 40 * 2138 255 18 8 chr9 8415363 8415877 -133855567 - LTR40a LTR ERVL 0 519 1 737 263 95 0 chr9 8415877 8416109 -133855335 - HERVL40 LTR ERVL 0 5530 5277 447 322 17 29 chr9 8416095 8416334 -133855110 - MER89-int LTR ERV1 -319 6482 6247 * 285 266 48 96 chr9 8416433 8416662 -133854782 - HERVL40 LTR ERVL -333 2704 2487 716 242 49 65 chr9 8416879 8417209 -133854235 - HERVL40 LTR ERVL -688 4660 2034 1957 222 24 30 chr9 8417243 8417484 -133853960 + MLT1D LTR MaLR 8 249 -256 2129 109 53 34 chr9 8417484 8417841 -133853603 - THE1B LTR MaLR 0 364 1 1957 222 24 30 chr9 8417841 8418100 -133853344 + MLT1D LTR MaLR 249 505 0 6436 251 47 30 chr9 8418102 8420001 -133851443 - HERVL40 LTR ERVL -1269 4261 2330 895 284 74 53 chr9 8420001 8420506 -133850938 + L2 LINE L2 2750 3274 -39 654 279 25 20 chr9 8422170 8422367 -133849077 + MIR SINE MIR 10 207 -55 260 163 20 0 chr9 8422376 8422436 -133849008 + MLT1J LTR MaLR 7 67 -383 297 100 0 0 chr9 8422447 8422497 -133848947 + L1MA9 LINE L1 6263 6312 0 22 0 0 0 chr9 8422502 8422524 -133848920 + AT_rich Low_complexity Low_complexity 1 22 0 6464 72 25 0 chr9 8422732 8424045 -133847399 - L1PA8A LINE L1 0 6131 4800 448 283 51 11 chr9 8424051 8424228 -133847216 + MLT1J2 LTR MaLR 62 245 -205 2090 132 0 14 chr9 8424388 8424684 -133846760 - AluSx SINE Alu -20 292 1 738 264 50 5 chr9 8425711 8425912 -133845532 + MIR SINE MIR 35 244 -18 1023 166 33 6 chr9 8425941 8426122 -133845322 + MER5A DNA MER1_type 1 186 -3 965 314 44 42 chr9 8426198 8426673 -133844771 + MLT1K LTR MaLR 24 499 -89 187 329 21 70 chr9 8426730 8426823 -133844621 + MIR SINE MIR 120 205 -57 881 279 84 60 chr9 8426823 8427274 -133844170 - LTR16B LTR ERVL -2 462 1 187 329 21 70 chr9 8427274 8427323 -133844121 + MIR SINE MIR 205 255 -7 24 32 0 0 chr9 8427874 8427905 -133843539 + AT_rich Low_complexity Low_complexity 1 31 0 2217 115 10 0 chr9 8427985 8428289 -133843155 - AluSp SINE Alu -6 307 1 914 277 4 11 chr9 8429565 8429825 -133841619 + MIR SINE MIR 3 260 -2 198 71 0 0 chr9 8430359 8430387 -133841057 + (CA)n Simple_repeat Simple_repeat 2 29 0 230 380 64 64 chr9 8430577 8430938 -133840506 - L2 LINE L2 -39 3233 2873 436 275 192 0 chr9 8431219 8431412 -133840032 + Charlie8 DNA MER1_type 57 286 -2131 2228 174 59 17 chr9 8431816 8432225 -133839219 - MSTB LTR MaLR 0 426 1 1220 123 22 20 chr9 8433241 8433485 -133837959 - MLT2A2 LTR ERVL 0 453 280 2892 134 0 0 chr9 8433485 8433919 -133837525 + MER57B LTR ERV1 1 434 0 3944 137 41 6 chr9 8433919 8434571 -133836873 + MER57B-int LTR ERV1 1 675 -6862 * 6447 148 68 41 chr9 8434565 8437451 -133833993 + MER57B-int LTR ERV1 288 4041 -1905 5721 107 101 51 chr9 8437442 8439539 -133831905 + MER57B-int LTR ERV1 5307 7537 0 * 2003 104 0 3 chr9 8439539 8439828 -133831616 + MER57B LTR ERV1 1 288 -146 1948 120 7 7 chr9 8439828 8440136 -133831308 - MLT2A2 LTR ERVL -145 308 1 220 136 23 23 chr9 8440801 8440807 -133830637 + (TCCA)n Simple_repeat Simple_repeat 1 6 -38 1602 193 69 33 chr9 8440807 8441257 -133830187 - MER31B LTR ERV1 0 466 1 220 136 23 23 chr9 8441257 8441294 -133830150 + (TCCA)n Simple_repeat Simple_repeat 5 44 0 589 258 47 38 chr9 8441814 8442027 -133829417 - MIR SINE MIR -14 248 34 341 300 67 20 chr9 8442495 8442645 -133828799 - MIR SINE MIR -49 213 57 471 242 16 65 chr9 8442781 8442967 -133828477 + MER104 DNA Tc2 3 179 -1 2035 140 10 3 chr9 8443213 8443513 -133827931 + AluSq SINE Alu 1 302 -11 321 226 13 157 chr9 8443923 8444082 -133827362 + MIR SINE MIR 57 193 -15 303 222 198 0 chr9 8444500 8444581 -133826863 + L2 LINE L2 3176 3272 0 242 301 81 29 chr9 8445989 8446125 -133825319 + MIR SINE MIR 97 239 -23 264 77 0 0 chr9 8446126 8446165 -133825279 + (TTCA)n Simple_repeat Simple_repeat 1 39 0 450 277 21 27 chr9 8446457 8446645 -133824799 + MER5A DNA MER1_type 3 189 0 506 297 35 0 chr9 8447860 8448005 -133823439 - L2 LINE L2 0 3272 3123 689 274 8 60 chr9 8448718 8448952 -133822492 + MIR SINE MIR 41 262 0 407 328 0 10 chr9 8449092 8449287 -133822157 + L1M4 LINE L1 4025 4217 -1929 1516 149 7 24 chr9 8449298 8449656 -133821788 + Charlie3 DNA MER1_type 24 2712 0 368 256 58 12 chr9 8449672 8449844 -133821600 + L1M4 LINE L1 4253 4432 -1714 2362 78 0 10 chr9 8449902 8450208 -133821236 + AluY SINE Alu 1 303 -8 32783 36 40 2 chr9 8450217 8454529 -133816915 - L1PA3 LINE L1 -1052 5094 615 7623 27 2 0 chr9 8454529 8455575 -133815869 + L1PA3 LINE L1 5107 6154 -1 318 226 137 0 chr9 8455666 8455768 -133815676 - L1M4 LINE L1 -1428 4718 4603 311 309 122 11 chr9 8456168 8456356 -133815088 + MLT1J2 LTR MaLR 1 209 -241 276 293 39 34 chr9 8456562 8456770 -133814674 + L1MEd LINE L1 1025 1233 -4886 28 71 0 0 chr9 8457254 8457310 -133814134 + AT_rich Low_complexity Low_complexity 1 56 0 418 68 81 25 chr9 8457356 8457517 -133813927 + (TA)n Simple_repeat Simple_repeat 1 170 0 232 167 28 28 chr9 8457526 8457598 -133813846 + (ATATG)n Simple_repeat Simple_repeat 4 75 0 282 142 47 9 chr9 8457623 8457729 -133813715 + (TA)n Simple_repeat Simple_repeat 1 110 0 304 254 14 0 chr9 8459218 8459289 -133812155 - MER112 DNA MER1_type -7 253 182 180 359 77 8 chr9 8459875 8459992 -133811452 - MIR SINE MIR -73 189 65 2061 126 6 25 chr9 8460807 8461124 -133810320 - AluSx SINE Alu -1 311 1 2101 141 21 26 chr9 8462661 8463038 -133808406 + THE1C LTR MaLR 1 375 0 10215 129 5 33 chr9 8463038 8464663 -133806781 + THE1C-int LTR MaLR 1 1580 0 1571 166 16 75 chr9 8464663 8465048 -133806396 + THE1C LTR MaLR 1 362 -13 24102 140 14 22 chr9 8466605 8473086 -133798358 + L1PA8 LINE L1 4 6484 -3 833 289 56 0 chr9 8473680 8473912 -133797532 + MIR SINE MIR 13 257 -5 1147 189 81 7 chr9 8474376 8474673 -133796771 - MER33 DNA MER1_type -5 319 1 1703 163 52 35 chr9 8475193 8475561 -133795883 - THE1C LTR MaLR 0 375 2 389 302 93 54 chr9 8476750 8477008 -133794436 - L2 LINE L2 -51 3262 2995 2501 74 3 0 chr9 8477176 8477486 -133793958 + AluY SINE Alu 1 311 0 2362 100 7 0 chr9 8477627 8477928 -133793516 - AluY SINE Alu -8 303 1 2376 103 0 0 chr9 8477962 8478273 -133793171 + AluY SINE Alu 1 311 0 2118 122 54 20 chr9 8478472 8478824 -133792620 - THE1B LTR MaLR 0 364 1 936 56 0 0 chr9 8478824 8478950 -133792494 - THE1B-int LTR MaLR 0 1580 1455 1945 138 62 34 chr9 8478964 8479318 -133792126 - THE1B LTR MaLR 0 364 1 498 238 0 62 chr9 8479318 8479478 -133791966 - MLT2D LTR ERVL -83 331 182 583 342 155 47 chr9 8479478 8480638 -133790806 - L2 LINE L2 -715 2599 1314 21 0 0 0 chr9 8481935 8481956 -133789488 + AT_rich Low_complexity Low_complexity 1 21 0 923 199 30 10 chr9 8482054 8482255 -133789189 - MER20 DNA MER1_type -14 205 1 722 333 48 18 chr9 8482589 8482989 -133788455 + L2 LINE L2 2465 2876 -438 400 206 7 110 chr9 8483108 8483254 -133788190 + L2 LINE L2 3183 3313 0 205 222 19 0 chr9 8483497 8483551 -133787893 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 218 227 0 0 chr9 8484037 8484081 -133787363 + (TAA)n Simple_repeat Simple_repeat 3 46 0 222 221 143 13 chr9 8484458 8484535 -133786909 - MIR SINE MIR -56 206 120 184 351 0 0 chr9 8484922 8484999 -133786445 - MIR SINE MIR -25 237 161 1028 251 8 8 chr9 8485008 8485259 -133786185 + MIR SINE MIR 12 262 0 609 245 48 0 chr9 8485258 8485405 -133786039 - MIR SINE MIR -105 157 4 * 1656 209 39 64 chr9 8485485 8486001 -133785443 + MLT1D LTR MaLR 1 503 -2 337 291 131 6 chr9 8486331 8486498 -133784946 + MIR3 SINE MIR 9 192 -64 309 300 60 8 chr9 8486533 8486666 -133784778 - MIR SINE MIR -65 143 34 35 24 0 0 chr9 8487466 8487508 -133783936 + AT_rich Low_complexity Low_complexity 1 42 0 196 327 87 39 chr9 8487911 8488015 -133783429 - L2 LINE L2 0 3313 3205 579 281 27 65 chr9 8488426 8488611 -133782833 - MIR SINE MIR -78 184 7 982 244 133 10 chr9 8490918 8491308 -133780136 + L1ME2 LINE L1 5726 6163 -1 560 259 105 46 chr9 8491784 8492023 -133779421 - MIR SINE MIR 0 262 10 541 192 0 56 chr9 8492448 8492573 -133778871 - MLT1C LTR MaLR 0 467 350 2596 139 38 24 chr9 8492623 8493121 -133778323 - L1MA7 LINE L1 0 6291 5787 470 145 0 0 chr9 8493121 8493197 -133778247 + L1MA7 LINE L1 5732 5807 -505 620 259 44 74 chr9 8493233 8493406 -133778038 - MLT1C LTR MaLR -205 262 98 2371 84 10 0 chr9 8493406 8493714 -133777730 - AluSq SINE Alu 0 313 3 620 259 44 74 chr9 8493714 8493810 -133777634 - MLT1C LTR MaLR -369 98 1 205 103 0 51 chr9 8495038 8495077 -133776367 + (TTCA)n Simple_repeat Simple_repeat 3 39 0 2070 93 0 5 chr9 8495897 8496189 -133775255 + L1PB1 LINE L1 5859 6146 -5 355 342 32 19 chr9 8496401 8496556 -133774888 + L2 LINE L2 3116 3272 0 337 271 150 15 chr9 8497204 8497337 -133774107 + MIR SINE MIR 30 180 -82 1002 221 149 24 chr9 8497365 8497791 -133773653 + MLT1D LTR MaLR 12 390 0 28 0 0 0 chr9 8498595 8498623 -133772821 + AT_rich Low_complexity Low_complexity 1 28 0 186 167 0 0 chr9 8499845 8499881 -133771563 + A-rich Low_complexity Low_complexity 2 37 0 2008 157 0 40 chr9 8500213 8500564 -133770880 - MER1B DNA MER1_type 0 337 1 386 318 75 19 chr9 8500678 8500857 -133770587 - MIR SINE MIR -64 144 6 363 326 70 32 chr9 8501090 8501277 -133770167 + MIR SINE MIR 4 197 -65 1240 199 45 87 chr9 8501583 8501964 -133769480 - MLT1A1 LTR MaLR 0 365 1 291 303 174 17 chr9 8502590 8502831 -133768613 + L1MC/D LINE L1 5294 5572 -2236 916 222 4 78 chr9 8502831 8502988 -133768456 + MLT1A1 LTR MaLR 1 133 -232 1807 174 0 10 chr9 8502988 8503293 -133768151 + AluJo SINE Alu 1 302 -10 916 222 4 78 chr9 8503293 8503392 -133768052 + MLT1A1 LTR MaLR 133 238 -127 489 306 41 0 chr9 8504625 8504772 -133766672 + MIR3 SINE MIR 50 202 -6 238 282 24 12 chr9 8505130 8505215 -133766229 - LTR16A1 LTR ERVL -25 432 347 682 271 107 27 chr9 8506332 8506500 -133764944 + LTR16C LTR ERVL 209 407 -84 756 164 99 6 chr9 8506500 8506671 -133764773 - MER53 DNA DNA 0 189 3 682 271 107 27 chr9 8506671 8506764 -133764680 + LTR16C LTR ERVL 407 491 0 509 284 52 90 chr9 8506908 8507274 -133764170 + MLT1J LTR MaLR 158 509 -2 249 333 0 29 chr9 8507326 8507395 -133764049 + L2 LINE L2 3009 3075 -238 204 330 144 0 chr9 8507446 8507543 -133763901 + MIR SINE MIR 152 262 0 2051 142 3 3 chr9 8507822 8508125 -133763319 + AluSg SINE Alu 1 303 -7 219 180 0 20 chr9 8508127 8508177 -133763267 + (ATTG)n Simple_repeat Simple_repeat 4 52 0 394 261 9 0 chr9 8508180 8508295 -133763149 + L1MC4 LINE L1 7922 8037 -5 256 220 186 0 chr9 8508342 8508401 -133763043 - MIR3 SINE MIR -48 160 91 223 305 0 0 chr9 8510084 8510143 -133761301 + (CA)n Simple_repeat Simple_repeat 2 60 0 302 298 165 0 chr9 8510158 8510279 -133761165 - L2 LINE L2 -12 3301 3161 1598 203 11 44 chr9 8510407 8510767 -133760677 + MER7A DNA MER2_type 1 346 0 193 377 57 16 chr9 8511162 8511284 -133760160 - L2 LINE L2 -9 3263 3137 566 345 22 9 chr9 8511400 8511632 -133759812 - MIR SINE MIR -10 252 18 1843 175 63 26 chr9 8511690 8512072 -133759372 - MSTD LTR MaLR 0 396 1 258 229 0 0 chr9 8512446 8512516 -133758928 + GA-rich Low_complexity Low_complexity 3 72 0 685 281 54 40 chr9 8513376 8513600 -133757844 - MIR SINE MIR -18 244 18 562 275 39 28 chr9 8513654 8513832 -133757612 + MLT1K LTR MaLR 26 205 -383 451 265 113 63 chr9 8513835 8514073 -133757371 + MLT1K LTR MaLR 331 580 -8 1907 197 14 3 chr9 8514418 8514769 -133756675 - MLT1A1 LTR MaLR 0 365 11 1573 214 27 24 chr9 8514784 8515157 -133756287 + MLT1A2 LTR MaLR 1 374 0 188 200 22 22 chr9 8515367 8515412 -133756032 + L2 LINE L2 3264 3308 -5 2343 167 151 10 chr9 8515435 8515697 -133755747 - MLT2B3 LTR ERVL 0 554 330 203 0 37 0 chr9 8515697 8515724 -133755720 + (GA)n Simple_repeat Simple_repeat 2 29 0 2343 167 151 10 chr9 8515724 8515945 -133755499 - MLT2B3 LTR ERVL -224 330 3 215 227 0 0 chr9 8516041 8516085 -133755359 + (TATG)n Simple_repeat Simple_repeat 1 44 0 507 33 0 0 chr9 8516087 8516148 -133755296 + (TCTA)n Simple_repeat Simple_repeat 4 64 0 420 269 40 86 chr9 8516932 8517107 -133754337 + MER63A DNA MER1_type 44 210 0 23 0 0 0 chr9 8517406 8517429 -133754015 + AT_rich Low_complexity Low_complexity 1 23 0 210 135 19 39 chr9 8518092 8518144 -133753300 + GA-rich Low_complexity Low_complexity 2 52 0 358 252 74 0 chr9 8518333 8518468 -133752976 + L1ME4a LINE L1 5690 5834 -287 1384 230 48 19 chr9 8518541 8518985 -133752459 + L1ME1 LINE L1 5688 6137 -27 303 253 100 65 chr9 8518990 8519019 -133752425 + L1ME4a LINE L1 5879 5906 -215 1811 178 45 17 chr9 8519019 8519374 -133752070 - MLT1A1 LTR MaLR 0 365 1 303 253 100 65 chr9 8519374 8519514 -133751930 + L1ME4a LINE L1 5906 6054 -67 239 276 13 13 chr9 8519562 8519638 -133751806 + (TCTA)n Simple_repeat Simple_repeat 3 78 0 23 54 0 0 chr9 8520106 8520143 -133751301 + AT_rich Low_complexity Low_complexity 1 37 0 203 291 219 40 chr9 8520199 8520350 -133751094 - MIR SINE MIR -84 178 1 2731 29 3 0 chr9 8521630 8521940 -133749504 - AluY SINE Alu 0 311 1 189 226 0 0 chr9 8521979 8522032 -133749412 + (TA)n Simple_repeat Simple_repeat 2 54 0 388 135 135 0 chr9 8524457 8524531 -133746913 - MLT1B LTR MaLR -305 85 2 212 253 0 131 chr9 8524721 8524820 -133746624 - MIR SINE MIR -89 173 88 488 333 64 5 chr9 8526104 8526308 -133745136 - MIR SINE MIR 0 262 47 415 238 25 16 chr9 8527137 8527259 -133744185 - L1ME3A LINE L1 -284 5886 5764 21 0 0 0 chr9 8527622 8527643 -133743801 + AT_rich Low_complexity Low_complexity 1 21 0 321 264 110 12 chr9 8527970 8528157 -133743287 - L1ME3 LINE L1 -289 5873 5665 659 302 74 20 chr9 8528221 8529007 -133742437 - L1ME3 LINE L1 -649 5513 4677 417 293 91 55 chr9 8529073 8529636 -133741808 - L1ME3 LINE L1 -1952 4194 3612 341 278 137 67 chr9 8529723 8530007 -133741437 - L1ME3 LINE L1 -2611 3535 3232 2718 84 16 11 chr9 8530187 8530558 -133740886 + THE1C LTR MaLR 1 373 -2 4666 67 2 2 chr9 8532456 8533057 -133738387 - L1PA7 LINE L1 0 6154 5554 29 47 0 0 chr9 8533064 8533107 -133738337 + AT_rich Low_complexity Low_complexity 1 43 0 789 217 56 28 chr9 8533907 8534087 -133737357 - MER3 DNA MER1_type -24 185 1 181 270 0 0 chr9 8534347 8534384 -133737060 + L2 LINE L2 3256 3292 -21 299 219 37 0 chr9 8534394 8534476 -133736968 - LTR50 LTR ERVL 0 795 711 1141 245 133 28 chr9 8534502 8535000 -133736444 - LTR50 LTR ERVL -142 653 1 3005 201 98 28 chr9 8535131 8536568 -133734876 + L1MB5 LINE L1 4304 5851 -323 182 235 0 0 chr9 8536644 8536678 -133734766 - L2 LINE L2 -6 3266 3233 499 257 151 29 chr9 8536680 8536886 -133734558 - MIR SINE MIR 0 262 32 201 368 15 0 chr9 8537827 8537895 -133733549 + MIR SINE MIR 54 122 -86 24 96 0 0 chr9 8537926 8537999 -133733445 + AT_rich Low_complexity Low_complexity 1 73 0 466 371 0 10 chr9 8538003 8538197 -133733247 - MIR SINE MIR -13 249 58 193 279 29 44 chr9 8538289 8538357 -133733087 + L2 LINE L2 3194 3260 -12 246 213 0 0 chr9 8538942 8538989 -133732455 + (TG)n Simple_repeat Simple_repeat 2 48 0 25 75 0 0 chr9 8538989 8539042 -133732402 + AT_rich Low_complexity Low_complexity 1 53 0 1584 205 46 10 chr9 8540501 8540852 -133730592 + MLT1A1 LTR MaLR 1 418 -10 255 333 26 9 chr9 8541165 8541279 -133730165 - MIR SINE MIR -55 207 92 243 295 109 12 chr9 8541596 8541918 -133729526 - L1MEc LINE L1 -2169 4046 3694 249 303 79 0 chr9 8541949 8542025 -133729419 + L2 LINE L2 3192 3273 -40 209 204 0 20 chr9 8542045 8542094 -133729350 + GA-rich Low_complexity Low_complexity 3 50 0 993 325 88 45 chr9 8542161 8543285 -133728159 - L1MEc LINE L1 -2659 3556 2384 531 220 15 38 chr9 8543482 8543614 -133727830 + FLAM_A SINE Alu 8 136 -6 313 318 136 15 chr9 8543660 8543924 -133727520 - L1MEc LINE L1 -3998 2398 2103 1505 168 44 54 chr9 8544619 8544916 -133726528 - AluJo SINE Alu -13 299 6 261 244 73 49 chr9 8544986 8545109 -133726335 - HAL1 LINE L1 -1151 1356 1231 23 54 0 0 chr9 8545253 8545290 -133726154 + AT_rich Low_complexity Low_complexity 1 37 0 279 310 23 11 chr9 8546025 8546112 -133725332 + MIR SINE MIR 57 144 -64 234 91 0 0 chr9 8547393 8547426 -133724018 + (T)n Simple_repeat Simple_repeat 1 33 0 207 0 0 0 chr9 8547747 8547770 -133723674 + (CA)n Simple_repeat Simple_repeat 2 24 0 430 243 13 185 chr9 8548566 8548866 -133722578 + MIR SINE MIR 4 248 -14 225 178 0 0 chr9 8549011 8549056 -133722388 + (CA)n Simple_repeat Simple_repeat 1 45 0 231 356 30 0 chr9 8550278 8550410 -133721034 + LTR16A LTR ERVL 13 148 -302 253 321 44 50 chr9 8551880 8552101 -133719343 - MIR3 SINE MIR -34 228 14 802 297 38 4 chr9 8552924 8553187 -133718257 + L2 LINE L2 2896 3167 -146 539 286 124 0 chr9 8553208 8553369 -133718075 + MIR SINE MIR 13 193 -69 486 304 0 14 chr9 8553416 8553554 -133717890 + L2 LINE L2 3178 3313 0 2602 163 5 66 chr9 8554774 8555346 -133716098 + MER74A LTR ERVL 1 537 -21 1111 188 39 0 chr9 8555810 8556018 -133715426 + MER58A DNA MER1_type 1 216 -8 2102 113 0 3 chr9 8556396 8556704 -133714740 + AluSq SINE Alu 1 307 0 351 130 0 0 chr9 8556877 8556931 -133714513 + MER20 DNA MER1_type 31 84 -135 6579 156 12 21 chr9 8556979 8558482 -133712962 - Ricksha DNA DNA -13 3238 1711 592 152 16 24 chr9 8558468 8558593 -133712851 - Ricksha DNA DNA -1049 132 9 * 497 224 9 0 chr9 8558612 8558719 -133712725 + MER20 DNA MER1_type 107 214 -5 180 240 135 31 chr9 8558724 8558820 -133712624 + MIR SINE MIR 102 207 -55 21 36 0 0 chr9 8558854 8558882 -133712562 + AT_rich Low_complexity Low_complexity 1 28 0 712 174 52 0 chr9 8559817 8559932 -133711512 - FLAM_A SINE Alu -9 124 4 196 392 13 0 chr9 8562604 8562683 -133708761 + L2 LINE L2 3164 3243 -29 428 266 16 23 chr9 8562844 8562972 -133708472 - MIR SINE MIR -21 241 115 216 202 26 26 chr9 8563055 8563169 -133708275 + (TA)n Simple_repeat Simple_repeat 2 115 0 459 224 0 112 chr9 8563324 8563458 -133707986 - MIR3 SINE MIR -46 162 44 227 217 49 105 chr9 8563648 8563791 -133707653 + L2 LINE L2 2878 3012 -260 486 227 109 0 chr9 8563896 8564006 -133707438 + MER45A DNA AcHobo 57 178 0 248 297 81 0 chr9 8564065 8564139 -133707305 + L2 LINE L2 3136 3215 -57 240 352 16 39 chr9 8564968 8565071 -133706373 - L2 LINE L2 -7 3306 3207 894 223 9 40 chr9 8565071 8565295 -133706149 + MIR SINE MIR 2 218 -44 2121 133 7 0 chr9 8565779 8566088 -133705356 - AluSx SINE Alu 0 312 2 2264 101 0 16 chr9 8566161 8566468 -133704976 - AluSg SINE Alu -8 302 1 2013 137 21 6 chr9 8568151 8568487 -133702957 + L1P4 LINE L1 5393 5733 -432 1463 214 31 26 chr9 8568538 8568922 -133702522 - MER89 LTR ERV1 0 559 174 318 143 32 0 chr9 8568922 8568985 -133702459 - MER89 LTR ERV1 -494 65 1 995 150 56 100 chr9 8569026 8569106 -133702338 + MER33 DNA MER1_type 1 83 -2502 2215 71 0 52 chr9 8569106 8569416 -133702028 + AluY SINE Alu 1 294 -17 995 150 56 100 chr9 8569416 8569674 -133701770 + MER33 DNA MER1_type 83 324 0 413 322 17 0 chr9 8573599 8573714 -133697730 + MIR3 SINE MIR 86 202 -6 28 48 0 0 chr9 8574103 8574145 -133697299 + AT_rich Low_complexity Low_complexity 1 42 0 262 239 103 77 chr9 8575321 8575438 -133696006 - MER20B DNA MER1_type -607 176 57 1991 165 123 8 chr9 8575929 8576311 -133695133 - MSTA LTR MaLR 0 428 3 1648 171 3 58 chr9 8576534 8576712 -133694732 - AluJo SINE Alu -2 310 157 1996 144 17 0 chr9 8576712 8577003 -133694441 - AluSx SINE Alu -16 296 1 1648 171 3 58 chr9 8577003 8577151 -133694293 - AluJo SINE Alu -155 157 2 442 326 47 23 chr9 8577421 8577593 -133693851 - MIR SINE MIR -50 212 37 201 310 42 0 chr9 8577814 8577885 -133693559 - MIR3 SINE MIR -11 197 124 363 277 97 13 chr9 8577886 8578041 -133693403 + MLT1J2 LTR MaLR 1 168 -282 228 86 0 0 chr9 8578062 8578097 -133693347 + (TCTCTG)n Simple_repeat Simple_repeat 2 36 0 28 29 0 0 chr9 8578181 8578216 -133693228 + AT_rich Low_complexity Low_complexity 1 35 0 820 192 7 0 chr9 8578223 8578369 -133693075 - AluJb SINE Alu -30 282 136 260 243 0 27 chr9 8578383 8578457 -133692987 + MLT1I LTR MaLR 336 407 -2 486 272 97 20 chr9 8579202 8579426 -133692018 + L1M4b LINE L1 11 549 -6306 1121 267 40 14 chr9 8579539 8579959 -133691485 + L1ME1 LINE L1 5731 6161 -5 184 283 321 9 chr9 8580173 8580279 -133691165 - MIR3 SINE MIR -16 192 54 269 294 147 45 chr9 8580857 8581034 -133690410 + MIR SINE MIR 7 201 -61 227 343 95 0 chr9 8581589 8581694 -133689750 + L2 LINE L2 3150 3264 -8 1882 127 25 28 chr9 8583230 8583513 -133687931 - AluY SINE Alu -29 282 1 23 0 0 0 chr9 8585587 8585610 -133685834 + AT_rich Low_complexity Low_complexity 1 23 0 2088 117 7 3 chr9 8585706 8586021 -133685423 - AluSq SINE Alu 0 316 1 22 56 0 0 chr9 8587361 8587397 -133684047 + AT_rich Low_complexity Low_complexity 1 36 0 183 292 167 31 chr9 8587872 8587968 -133683476 - L2 LINE L2 -1 3312 3204 328 367 130 18 chr9 8588621 8589013 -133682431 - L2 LINE L2 0 3272 2837 1259 123 36 5 chr9 8589163 8589382 -133682062 - L1MA8 LINE L1 -5 6286 6061 38561 69 10 8 chr9 8589389 8595484 -133675960 - L1PA3 LINE L1 -3 6152 44 4132 145 9 0 chr9 8595484 8596298 -133675146 - L1MA8 LINE L1 -744 5402 4450 1655 154 0 0 chr9 8596324 8596596 -133674848 - L1MA8 LINE L1 -1800 4346 4075 1210 168 15 0 chr9 8596817 8597020 -133674424 + L1PA15 LINE L1 5939 6144 -21 338 314 128 21 chr9 8597436 8597678 -133673766 - LTR33A LTR ERVL -129 394 127 1175 226 146 45 chr9 8597912 8598289 -133673155 + LTR48 LTR ERV1 1 415 -372 574 178 34 126 chr9 8598292 8598561 -133672883 + LTR48 LTR ERV1 544 787 0 266 263 52 0 chr9 8599511 8599614 -133671830 - Charlie8 DNA MER1_type -1014 1403 203 223 277 89 50 chr9 8599645 8599746 -133671698 - L2 LINE L2 -283 3030 2926 598 245 0 73 chr9 8599746 8599791 -133671653 - MER5B DNA MER1_type 0 178 131 2537 81 0 0 chr9 8599791 8600100 -133671344 - AluSx SINE Alu -3 309 1 598 245 0 73 chr9 8600100 8600246 -133671198 - MER5B DNA MER1_type -47 131 1 240 326 11 11 chr9 8600252 8600341 -133671103 - Charlie8 DNA MER1_type -2201 216 128 281 262 72 42 chr9 8600829 8601066 -133670378 + L1ME4a LINE L1 5872 6115 -6 282 29 0 0 chr9 8601116 8601151 -133670293 + (TG)n Simple_repeat Simple_repeat 2 36 0 216 0 0 0 chr9 8601209 8601233 -133670211 + (TGAA)n Simple_repeat Simple_repeat 3 26 0 280 230 81 23 chr9 8602085 8602172 -133669272 - MIR3 SINE MIR -50 158 67 1651 166 60 21 chr9 8603257 8603570 -133667874 - MER2 DNA MER2_type 0 345 17 2423 127 27 78 chr9 8603570 8604019 -133667425 - MSTB LTR MaLR 0 426 1 1651 166 60 21 chr9 8604019 8604037 -133667407 - MER2 DNA MER2_type -328 17 1 227 228 35 0 chr9 8604104 8604161 -133667283 - MLT1J LTR MaLR -30 481 423 266 308 0 0 chr9 8604466 8604531 -133666913 + L3b LINE CR1 1276 1340 -243 7998 25 2 2 chr9 8604674 8606392 -133665052 - L1PA3 LINE L1 -1 6154 4437 886 9 0 0 chr9 8606392 8606499 -133664945 + L1PA3 LINE L1 4326 4432 -1714 193 245 0 38 chr9 8606715 8606768 -133664676 - L2 LINE L2 0 3313 3263 198 71 0 0 chr9 8607891 8607919 -133663525 + (TA)n Simple_repeat Simple_repeat 2 29 0 260 222 69 0 chr9 8608808 8608880 -133662564 - MIR SINE MIR -88 174 98 8349 130 16 1 chr9 8609140 8610409 -133661035 + HSMAR2 DNA Mariner 5 1292 -10 363 325 80 51 chr9 8610865 8611216 -133660228 + L2 LINE L2 2535 2895 -419 301 369 0 39 chr9 8611379 8611509 -133659935 + L2 LINE L2 3133 3257 -15 460 243 59 64 chr9 8611523 8611587 -133659857 - MIR SINE MIR -3 259 196 2247 192 12 19 chr9 8611587 8611820 -133659624 - MSTB LTR MaLR -2 424 194 1395 234 3 23 chr9 8611820 8612123 -133659321 - AluJb SINE Alu -15 297 1 2247 192 12 19 chr9 8612123 8612316 -133659128 - MSTB LTR MaLR -232 194 1 460 243 59 64 chr9 8612316 8612472 -133658972 - MIR SINE MIR -66 196 40 208 253 220 22 chr9 8613590 8613681 -133657763 + MIR SINE MIR 36 144 -118 181 314 114 38 chr9 8613803 8613908 -133657536 + L3b LINE CR1 1296 1408 -175 804 139 0 39 chr9 8613960 8614089 -133657355 - FLAM_C SINE Alu -19 124 1 218 242 16 16 chr9 8615055 8615117 -133656327 + L2 LINE L2 3251 3312 -1 758 263 124 0 chr9 8615224 8615441 -133656003 + MIR SINE MIR 14 257 -5 205 281 158 23 chr9 8615515 8615784 -133655660 - L2 LINE L2 0 3272 2928 851 201 36 82 chr9 8615853 8616072 -133655372 - MER20 DNA MER1_type -10 209 1 183 379 81 0 chr9 8617497 8617621 -133653823 + L3b LINE CR1 1377 1510 -73 186 167 0 0 chr9 8618196 8618232 -133653212 + (TG)n Simple_repeat Simple_repeat 2 37 0 317 266 38 0 chr9 8618824 8618903 -133652541 + L2 LINE L2 3190 3271 -1 402 100 0 0 chr9 8619771 8619831 -133651613 + (TG)n Simple_repeat Simple_repeat 2 61 0 1242 218 157 11 chr9 8620677 8621302 -133650142 - LTR50 LTR ERVL 0 795 5 296 396 132 7 chr9 8621708 8621852 -133649592 + MER91A DNA MER1_type 34 195 -1 194 263 70 0 chr9 8621883 8621940 -133649504 + L2 LINE L2 3006 3066 -206 1286 211 34 4 chr9 8622328 8622757 -133648687 + L1MB8 LINE L1 5137 5578 -596 2020 132 140 8 chr9 8622766 8623144 -133648300 - MSTA LTR MaLR 0 428 1 8968 168 19 31 chr9 8623149 8624814 -133646630 - MSTA-int LTR MaLR -6 1645 1 2250 127 99 10 chr9 8624814 8625207 -133646237 - MSTA LTR MaLR 0 428 1 1469 176 35 6 chr9 8625207 8625526 -133645918 + L1MB8 LINE L1 5583 5910 -268 398 145 0 0 chr9 8625528 8625590 -133645854 - MADE1 DNA Mariner -18 62 1 394 228 11 5 chr9 8625590 8625778 -133645666 + L1MB8 LINE L1 5908 6172 -6 400 349 24 8 chr9 8626000 8626126 -133645318 - L2 LINE L2 0 3272 3145 761 326 143 33 chr9 8626175 8626777 -133644667 - L2 LINE L2 -653 2661 1994 241 174 0 0 chr9 8627091 8627137 -133644307 - L1MB1 LINE L1 -1 6167 6122 2801 110 19 14 chr9 8627139 8627567 -133643877 - L1PA16 LINE L1 0 6166 5737 3100 149 5 13 chr9 8627567 8628362 -133643082 + L1PA16 LINE L1 4949 5737 -429 473 162 108 0 chr9 8628360 8628471 -133642973 - L1MB1 LINE L1 -39 6129 6007 * 841 180 19 0 chr9 8628475 8628636 -133642808 - L1MB1 LINE L1 -236 5932 5769 * 24463 63 5 2 chr9 8628635 8632603 -133638841 - L1PA6 LINE L1 0 6154 2175 3852 131 29 3 chr9 8632603 8633222 -133638222 - MER11B LTR ERVK -601 635 1 4825 167 34 5 chr9 8633222 8634728 -133636716 - L1PA14 LINE L1 -332 6480 4935 5285 167 19 10 chr9 8634730 8636296 -133635148 + L1PB1 LINE L1 4573 6143 -8 11262 199 39 32 chr9 8636311 8640533 -133630911 - L1PA14 LINE L1 -1851 4946 728 279 0 0 0 chr9 8640533 8640564 -133630880 + (CA)n Simple_repeat Simple_repeat 1 31 0 11262 199 39 32 chr9 8640564 8641173 -133630271 - L1PA14 LINE L1 -6069 728 125 2294 272 71 28 chr9 8641178 8642517 -133628927 - L1M4 LINE L1 -2478 3668 2273 27 0 0 0 chr9 8642599 8642626 -133628818 + AT_rich Low_complexity Low_complexity 1 27 0 203 0 37 0 chr9 8643102 8643129 -133628315 + (TTA)n Simple_repeat Simple_repeat 3 30 0 278 267 139 10 chr9 8644426 8644527 -133626917 + LTR16A LTR ERVL 337 450 0 255 176 68 27 chr9 8644528 8644602 -133626842 + MLT1K LTR MaLR 496 572 -16 832 166 21 100 chr9 8644879 8645120 -133626324 - L1MA4A LINE L1 -114 6189 5968 * 1627 51 0 0 chr9 8645097 8645312 -133626132 - L1P2 LINE L1 -644 5510 5296 * 1652 121 18 33 chr9 8645303 8645575 -133625869 + L1M1 LINE L1 5465 5732 -571 * 12292 218 55 22 chr9 8645573 8647627 -133623817 - L1 LINE L1 -842 6006 4023 234 0 0 0 chr9 8647627 8647653 -133623791 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 12292 218 55 22 chr9 8647653 8649536 -133621908 - L1 LINE L1 -2825 4023 1908 3659 202 61 13 chr9 8649544 8650309 -133621135 - L1 LINE L1 -6067 782 2 388 222 5 62 chr9 8651082 8651191 -133620253 - MLT2E LTR ERVL -336 185 36 24 0 0 0 chr9 8651458 8651482 -133619962 + AT_rich Low_complexity Low_complexity 1 24 0 201 268 0 36 chr9 8652384 8652440 -133619004 + GA-rich Low_complexity Low_complexity 4 57 0 437 315 56 29 chr9 8653165 8653718 -133617726 - L1MC4a LINE L1 -846 5445 5297 286 245 170 34 chr9 8653805 8654070 -133617374 - L1MC4a LINE L1 -1773 4373 4073 2429 77 3 3 chr9 8654136 8654447 -133616997 - AluY SINE Alu 0 311 1 321 306 32 64 chr9 8654451 8654670 -133616774 - L1MC4a LINE L1 -2117 4029 3818 723 119 24 8 chr9 8654694 8654820 -133616624 - L1MA5A LINE L1 -4 6293 6166 2716 125 26 9 chr9 8654849 8655304 -133616140 - L1PA16 LINE L1 -9 6157 5695 5483 245 66 25 chr9 8655306 8656071 -133615373 - L1M4 LINE L1 -758 5388 4656 1702 187 0 22 chr9 8656071 8656386 -133615058 - AluJo SINE Alu 0 312 5 5483 245 66 25 chr9 8656386 8657893 -133613551 - L1M4 LINE L1 -1490 4656 2762 287 266 64 0 chr9 8658096 8658190 -133613254 - L1PA12 LINE L1 -5398 2183 2084 914 343 20 51 chr9 8658289 8658922 -133612522 - L1PA12 LINE L1 -6173 1401 788 227 272 52 81 chr9 8658951 8659124 -133612320 - L1MC4a LINE L1 -2342 3804 3637 253 328 55 55 chr9 8659168 8659351 -133612093 - MER5A DNA MER1_type -2 187 5 1504 319 83 25 chr9 8659421 8660238 -133611206 + HAL1 LINE L1 10 874 -1633 185 62 0 31 chr9 8660247 8660279 -133611165 + (TTTTA)n Simple_repeat Simple_repeat 1 31 0 3415 25 0 0 chr9 8660279 8660674 -133610770 - L1PA4 LINE L1 -24 6131 5737 363 0 0 0 chr9 8660671 8660711 -133610733 + L1P2 LINE L1 5618 5657 -498 * 461 238 115 73 chr9 8660707 8661282 -133610162 + HAL1 LINE L1 863 1461 -1046 456 318 40 0 chr9 8661282 8661430 -133610014 + L2 LINE L2 3160 3313 0 381 316 36 14 chr9 8661621 8661760 -133609684 - L3 LINE CR1 -8 1569 1428 2030 130 0 0 chr9 8662234 8662511 -133608933 - AluSq SINE Alu -15 298 22 339 270 132 7 chr9 8662774 8662926 -133608518 + MIR3 SINE MIR 31 201 -7 1997 112 13 16 chr9 8662972 8663275 -133608169 - AluSq SINE Alu -11 302 1 293 306 50 16 chr9 8663674 8663795 -133607649 + MIR3 SINE MIR 8 132 -76 200 231 19 19 chr9 8663952 8664004 -133607440 - L2 LINE L2 -8 3305 3254 415 232 141 68 chr9 8664522 8664699 -133606745 - MIR SINE MIR -24 238 49 4627 88 8 8 chr9 8664952 8665602 -133605842 + L1PA10 LINE L1 5519 6168 0 302 186 253 98 chr9 8665640 8665834 -133605610 + MLT1H LTR MaLR 1 224 -325 2388 151 45 0 chr9 8665873 8666270 -133605174 - MSTB LTR MaLR -11 415 1 36842 98 6 6 chr9 8666479 8672625 -133598819 - L1PA6 LINE L1 -4 6150 11 1986 111 0 14 chr9 8673592 8673871 -133597573 + AluSc SINE Alu 1 275 -34 756 32 0 0 chr9 8673871 8673966 -133597478 + (TC)n Simple_repeat Simple_repeat 2 96 0 2485 56 0 3 chr9 8674054 8674359 -133597085 + AluY SINE Alu 1 304 -7 1745 44 0 31 chr9 8674529 8674757 -133596687 + L1PA5 LINE L1 5928 6148 -6 203 211 0 0 chr9 8675280 8675318 -133596126 - MIR SINE MIR -72 136 99 264 170 0 0 chr9 8675425 8675478 -133595966 + (TATG)n Simple_repeat Simple_repeat 2 54 0 353 292 175 38 chr9 8675818 8676212 -133595232 + MLT1L LTR MaLR 166 613 -2 216 261 0 0 chr9 8676409 8676455 -133594989 - MER5A DNA MER1_type -128 61 16 234 174 0 0 chr9 8676582 8676628 -133594816 + (ATG)n Simple_repeat Simple_repeat 3 48 0 788 277 38 34 chr9 8676657 8676809 -133594635 + MIR SINE MIR 7 162 -100 1899 148 49 25 chr9 8676809 8677175 -133594269 + THE1C LTR MaLR 1 375 0 788 277 38 34 chr9 8677175 8677257 -133594187 + MIR SINE MIR 162 242 -20 323 260 79 0 chr9 8679143 8679270 -133592174 - L1ME4a LINE L1 -50 6071 5935 350 299 216 0 chr9 8680867 8681001 -133590443 - MER5A DNA MER1_type -2 187 25 2750 20 0 0 chr9 8682165 8682468 -133588976 + AluY SINE Alu 1 303 -8 595 324 29 0 chr9 8683885 8684055 -133587389 + MIR3 SINE MIR 19 193 -15 10675 200 27 41 chr9 8684553 8685009 -133586435 - L1PA16 LINE L1 0 6166 5705 2584 108 14 3 chr9 8685009 8685379 -133586065 - THE1C LTR MaLR -1 374 1 10675 200 27 41 chr9 8685379 8685793 -133585651 - L1PA16 LINE L1 -461 5705 5287 3780 94 14 38 chr9 8685793 8686418 -133585026 - L1MA2 LINE L1 0 6304 5695 10675 200 27 41 chr9 8686418 8687266 -133584178 - L1PA16 LINE L1 -879 5287 4429 2316 98 0 16 chr9 8687266 8687582 -133583862 - AluY SINE Alu 0 311 1 10675 200 27 41 chr9 8687582 8689752 -133581692 - L1PA16 LINE L1 -1737 4429 2304 * 20968 47 3 1 chr9 8689742 8693164 -133578280 - L1PA5 LINE L1 0 6154 2725 209 179 39 77 chr9 8693279 8693357 -133578087 + A-rich Low_complexity Low_complexity 5 79 0 516 268 0 9 chr9 8695235 8695347 -133576097 + MIR SINE MIR 41 151 -111 210 71 0 0 chr9 8695917 8695945 -133575499 + (TA)n Simple_repeat Simple_repeat 1 28 0 301 263 131 0 chr9 8695948 8696047 -133575397 - MIR SINE MIR -25 237 126 377 265 103 0 chr9 8696383 8696500 -133574944 + Zaphod DNA AcHobo 3900 4028 -3 516 271 17 0 chr9 8696501 8696619 -133574825 - MIR SINE MIR -137 125 6 336 219 93 35 chr9 8696978 8697163 -133574281 + MIR SINE MIR 10 248 -14 580 266 83 16 chr9 8697216 8697408 -133574036 - MIR SINE MIR -1 261 57 1041 243 31 20 chr9 8697414 8697735 -133573709 - MER58B DNA MER1_type 0 341 1 1502 214 57 10 chr9 8698854 8699261 -133572183 + LTR37A LTR ERV1 1 426 0 245 325 105 26 chr9 8700815 8700929 -133570515 - L2 LINE L2 -12 3260 3138 625 355 132 20 chr9 8701481 8702338 -133569106 - L2 LINE L2 -825 2489 1537 417 225 28 84 chr9 8703956 8704098 -133567346 + MIR SINE MIR 8 141 -121 181 246 31 77 chr9 8704280 8704345 -133567099 - L2 LINE L2 -45 3268 3207 783 290 75 36 chr9 8704367 8704726 -133566718 + LTR33 LTR ERVL 149 521 0 397 339 48 16 chr9 8704865 8705051 -133566393 - MIR SINE MIR -70 192 1 493 276 6 41 chr9 8706129 8706299 -133565145 + MIR SINE MIR 29 191 -69 197 367 41 31 chr9 8708059 8708157 -133563287 - L2 LINE L2 -32 3240 3142 1140 189 42 0 chr9 8708425 8708685 -133562759 + L1MA4 LINE L1 6018 6288 -12 767 297 64 55 chr9 8708961 8709399 -133562045 - L1MEd LINE L1 -5613 506 65 503 329 70 51 chr9 8709557 8709913 -133561531 + L2 LINE L2 2939 3301 -12 537 258 22 39 chr9 8710513 8710691 -133560753 + MER5B DNA MER1_type 2 176 -2 291 337 0 0 chr9 8710768 8710860 -133560584 + L2 LINE L2 3180 3271 -1 21 36 0 0 chr9 8711746 8711774 -133559670 + AT_rich Low_complexity Low_complexity 1 28 0 369 43 0 0 chr9 8711980 8712027 -133559417 + (TAGA)n Simple_repeat Simple_repeat 3 49 0 5100 171 35 24 chr9 8713493 8714867 -133556577 - L1MA9 LINE L1 0 6312 4927 2742 136 28 29 chr9 8714857 8715488 -133555956 - L1P4 LINE L1 -425 5740 5113 * 1154 193 75 55 chr9 8715487 8715939 -133555505 - L1MA9 LINE L1 -2757 3389 2929 * 859 254 39 21 chr9 8715990 8716269 -133555175 + L1MA9 LINE L1 5987 6270 -42 4029 146 84 40 chr9 8716651 8717540 -133553904 - L1PB4 LINE L1 0 6156 5229 6154 147 17 4 chr9 8717540 8718558 -133552886 + Ricksha_c DNA DNA 906 1936 -110 333 0 0 0 chr9 8718723 8718760 -133552684 + (TC)n Simple_repeat Simple_repeat 2 38 0 321 321 0 0 chr9 8718760 8718844 -133552600 - L1MC4 LINE L1 -1341 6701 6618 21 36 0 0 chr9 8718962 8718990 -133552454 + AT_rich Low_complexity Low_complexity 1 28 0 2118 124 0 7 chr9 8719093 8719391 -133552053 + AluSx SINE Alu 1 296 -16 43 56 0 0 chr9 8719529 8719600 -133551844 + AT_rich Low_complexity Low_complexity 1 71 0 1864 117 8 4 chr9 8721277 8721542 -133549902 - AluSc SINE Alu -9 300 35 1061 266 100 35 chr9 8721673 8722185 -133549259 - MLT1H LTR MaLR 0 549 5 625 266 141 0 chr9 8722319 8722518 -133548926 + MIR SINE MIR 23 249 -13 310 266 120 20 chr9 8723686 8723820 -133547624 - MIR SINE MIR -62 146 38 279 0 0 0 chr9 8724031 8724062 -133547382 + (CA)n Simple_repeat Simple_repeat 1 31 0 2091 94 59 0 chr9 8725266 8725552 -133545892 - AluSg SINE Alu -5 305 3 359 307 90 16 chr9 8726456 8726645 -133544799 + MIR SINE MIR 49 251 -11 281 330 50 105 chr9 8727566 8727908 -133543536 - L2 LINE L2 0 3272 2950 242 332 237 12 chr9 8728175 8728512 -133542932 - L2 LINE L2 -925 2389 1977 704 270 37 68 chr9 8729179 8729534 -133541910 - MLT1H LTR MaLR -131 418 75 310 290 0 0 chr9 8729614 8729683 -133541761 + MIR SINE MIR 3 71 -191 195 196 0 65 chr9 8729735 8729781 -133541663 + MIR SINE MIR 201 243 -19 478 224 106 12 chr9 8730051 8730212 -133541232 - L1ME LINE L1 -439 5682 5507 483 18 0 0 chr9 8732024 8732080 -133539364 + (TA)n Simple_repeat Simple_repeat 2 57 0 1971 186 21 8 chr9 8732158 8732539 -133538905 + MLT1B LTR MaLR 3 388 -2 24 32 0 0 chr9 8732601 8732632 -133538812 + AT_rich Low_complexity Low_complexity 1 31 0 288 210 32 0 chr9 8732788 8732850 -133538594 - MLT1I LTR MaLR 0 409 346 508 292 14 14 chr9 8733141 8733285 -133538159 - MLT1I LTR MaLR -207 202 59 1952 309 16 48 chr9 8734156 8734903 -133536541 + L1PA15 LINE L1 1 723 -6064 14158 223 23 15 chr9 8735018 8737523 -133533921 + L1PA15 LINE L1 1324 3809 -3007 2445 123 13 11 chr9 8737523 8737897 -133533547 + THE1C LTR MaLR 1 375 0 14158 223 23 15 chr9 8737897 8740844 -133530600 + L1PA15 LINE L1 3809 6815 -1 216 86 0 0 chr9 8741986 8742021 -133529423 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr9 8742090 8742111 -133529333 + AT_rich Low_complexity Low_complexity 1 21 0 236 200 0 50 chr9 8742587 8742647 -133528797 + L2 LINE L2 3255 3311 -2 22 56 0 0 chr9 8742981 8743017 -133528427 + AT_rich Low_complexity Low_complexity 1 36 0 264 222 0 0 chr9 8743606 8743678 -133527766 + (TG)n Simple_repeat Simple_repeat 1 72 0 333 0 0 0 chr9 8744198 8744235 -133527209 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 309 230 190 10 chr9 8744372 8744472 -133526972 - L2 LINE L2 -1 3312 3195 2160 136 0 0 chr9 8746235 8746544 -133524900 - AluSc SINE Alu 0 309 1 481 263 112 0 chr9 8746636 8746788 -133524656 - MLT1H1 LTR MaLR 0 555 387 382 297 68 68 chr9 8746806 8747028 -133524416 - MLT1H1 LTR MaLR -273 282 61 504 328 6 22 chr9 8748270 8748450 -133522994 - MIR SINE MIR -32 230 54 1710 229 28 21 chr9 8748490 8748923 -133522521 - L1ME1 LINE L1 -9 6157 5722 2569 67 0 0 chr9 8749143 8749443 -133522001 - AluY SINE Alu -11 300 1 180 265 61 0 chr9 8749467 8749516 -133521928 + L2 LINE L2 3221 3272 0 382 343 6 17 chr9 8750080 8750260 -133521184 + MIR SINE MIR 30 206 -41 2429 81 7 3 chr9 8751264 8751573 -133519871 + AluY SINE Alu 1 310 -1 297 128 0 0 chr9 8755896 8755943 -133515501 + (A)n Simple_repeat Simple_repeat 1 47 0 497 173 0 10 chr9 8756050 8756154 -133515290 + CT-rich Low_complexity Low_complexity 2 104 0 446 311 28 17 chr9 8756550 8756730 -133514714 + MIR SINE MIR 81 262 0 188 346 90 32 chr9 8756860 8757239 -133514205 + L2 LINE L2 2670 3071 -201 523 255 50 32 chr9 8757775 8757973 -133513471 - MIR SINE MIR -42 220 18 352 234 117 7 chr9 8758125 8758270 -133513174 - L1ME4a LINE L1 0 6121 5961 836 84 0 0 chr9 8758311 8758418 -133513026 - AluY SINE Alu -6 305 199 23 33 0 0 chr9 8758650 8758680 -133512764 + AT_rich Low_complexity Low_complexity 1 30 0 1019 247 17 0 chr9 8759172 8759411 -133512033 + MIR SINE MIR 20 262 0 3523 251 53 23 chr9 8759525 8759868 -133511576 - L1MDb LINE L1 -2295 3785 3454 2090 134 0 0 chr9 8759868 8760158 -133511286 + AluSx SINE Alu 3 292 -20 3523 251 53 23 chr9 8760158 8761403 -133510041 - L1MDb LINE L1 -2626 3454 463 274 279 101 16 chr9 8761526 8761655 -133509789 - L1MDb LINE L1 -5664 406 267 333 296 63 0 chr9 8761836 8762017 -133509427 - L1ME LINE L1 -5384 686 515 1003 167 19 0 chr9 8763790 8763952 -133507492 - AluJb SINE Alu -15 297 133 430 335 70 44 chr9 8765133 8765476 -133505968 + MLT1J2 LTR MaLR 99 450 0 289 283 10 10 chr9 8765878 8765905 -133505539 + L3 LINE CR1 647 673 -904 2543 196 21 44 chr9 8765905 8766472 -133504972 - MLT2B3 LTR ERVL 0 554 1 289 283 10 10 chr9 8766472 8766543 -133504901 + L3 LINE CR1 672 745 -832 2043 118 48 3 chr9 8766899 8767188 -133504256 - AluSc SINE Alu -7 302 1 207 139 23 23 chr9 8767347 8767390 -133504054 + A-rich Low_complexity Low_complexity 2 44 0 229 373 117 12 chr9 8767677 8767924 -133503520 + L3 LINE CR1 1251 1523 -54 1860 191 0 20 chr9 8767941 8768291 -133503153 + MLT1A1 LTR MaLR 21 363 -2 222 217 29 43 chr9 8768410 8768479 -133502965 + CT-rich Low_complexity Low_complexity 4 71 0 337 393 17 6 chr9 8768479 8768657 -133502787 - L2 LINE L2 -1 3312 3133 629 281 65 5 chr9 8769452 8769680 -133501764 + MIR SINE MIR 5 246 -16 180 158 40 13 chr9 8771412 8771488 -133499956 + (TCTCTG)n Simple_repeat Simple_repeat 3 80 0 251 181 36 24 chr9 8771505 8771671 -133499773 + (TCTCTG)n Simple_repeat Simple_repeat 4 171 0 435 156 21 54 chr9 8771688 8771874 -133499570 + (TCTCTG)n Simple_repeat Simple_repeat 1 180 0 1079 145 0 12 chr9 8772340 8772512 -133498932 - AluSp SINE Alu -10 303 134 2420 95 0 3 chr9 8772512 8772816 -133498628 - AluY SINE Alu -8 303 1 258 292 0 0 chr9 8773736 8773808 -133497636 + MER5A DNA MER1_type 4 75 -114 232 277 9 9 chr9 8773892 8774004 -133497440 + (CA)n Simple_repeat Simple_repeat 2 113 0 1421 189 0 26 chr9 8774321 8774611 -133496833 + AluJo SINE Alu 25 307 0 251 313 157 7 chr9 8774791 8774938 -133496506 - MIR SINE MIR -71 191 23 2510 107 8 8 chr9 8776524 8776897 -133494547 - THE1C LTR MaLR 0 375 3 247 286 36 0 chr9 8778139 8778223 -133493221 + MIR SINE MIR 52 138 -70 238 216 98 49 chr9 8778809 8778911 -133492533 - LTR16C LTR ERVL 0 491 385 208 195 0 46 chr9 8779603 8779690 -133491754 + (CACCC)n Simple_repeat Simple_repeat 3 85 0 2200 122 0 10 chr9 8780785 8781089 -133490355 - AluSx SINE Alu -10 302 2 1352 263 54 28 chr9 8781646 8782107 -133489337 - MLT1E2 LTR MaLR -7 619 147 375 278 57 41 chr9 8786469 8786663 -133484781 - MER58A DNA MER1_type -2 222 26 1144 175 60 19 chr9 8786728 8786997 -133484447 - THE1C LTR MaLR 0 375 96 602 224 76 59 chr9 8788356 8788593 -133482851 + MIR SINE MIR 8 248 -14 360 246 129 23 chr9 8788614 8788834 -133482610 + MLT1K LTR MaLR 360 613 -2 1998 59 0 0 chr9 8789203 8789459 -133481985 - L1PA5 LINE L1 -1 6153 5898 185 189 0 0 chr9 8790172 8790209 -133481235 - L2 LINE L2 -23 3249 3213 245 279 58 0 chr9 8790210 8790314 -133481130 - MIR SINE MIR -124 138 29 216 184 0 0 chr9 8791003 8791041 -133480403 + (CA)n Simple_repeat Simple_repeat 1 38 0 282 243 0 0 chr9 8791173 8791247 -133480197 + G-rich Low_complexity Low_complexity 1 74 0 633 276 92 0 chr9 8793591 8793830 -133477614 - Charlie5 DNA MER1_type 0 2624 2364 256 288 14 0 chr9 8793817 8793890 -133477554 - Charlie5 DNA MER1_type -2536 76 3 * 215 286 83 7 chr9 8794416 8794510 -133476934 + MIR SINE MIR 45 144 -64 564 214 17 0 chr9 8794718 8794891 -133476553 + CT-rich Low_complexity Low_complexity 1 176 0 1480 94 44 5 chr9 8795777 8795980 -133475464 + AluSg/x SINE Alu 85 295 -17 259 301 54 0 chr9 8796726 8796819 -133474625 + MIR3 SINE MIR 92 189 -19 298 224 0 0 chr9 8796952 8797010 -133474434 + L2 LINE L2 3215 3272 0 1696 149 55 3 chr9 8797080 8797369 -133474075 - AluSx SINE Alu -8 304 1 421 345 40 0 chr9 8798312 8798486 -133472958 + MIR SINE MIR 50 230 -32 1165 252 55 3 chr9 8799081 8799406 -133472038 + MER7A DNA MER2_type 1 340 -6 298 283 11 22 chr9 8799792 8799884 -133471560 + MIR SINE MIR 87 177 -85 188 333 0 0 chr9 8799940 8799988 -133471456 - MIR SINE MIR -106 156 109 233 209 75 0 chr9 8801065 8801132 -133470312 - MLT1J LTR MaLR -341 170 99 181 296 28 14 chr9 8802913 8802984 -133468460 + L2 LINE L2 2994 3065 -248 2352 60 0 0 chr9 8803218 8803529 -133467915 - AluY SINE Alu 0 311 1 817 164 0 29 chr9 8803529 8803669 -133467775 - AluJo SINE Alu -176 136 1 1912 97 0 0 chr9 8803718 8803965 -133467479 - AluSx SINE Alu -19 293 47 186 200 20 20 chr9 8804593 8804643 -133466801 - MIR SINE MIR -57 151 102 390 303 70 32 chr9 8805043 8805228 -133466216 + MIR SINE MIR 41 232 -30 401 330 62 17 chr9 8805494 8805785 -133465659 - L1MEc LINE L1 -6028 368 65 627 253 220 10 chr9 8807652 8808011 -133463433 - MLT1C LTR MaLR -47 420 1 194 126 11 69 chr9 8808720 8808807 -133462637 + (GGA)n Simple_repeat Simple_repeat 2 83 0 351 297 109 0 chr9 8810989 8811127 -133460317 - MIR SINE MIR -19 243 91 23 0 0 0 chr9 8812822 8812845 -133458599 + GC_rich Low_complexity Low_complexity 1 23 0 326 251 115 20 chr9 8814357 8814475 -133456969 + MIR SINE MIR 33 162 -46 2122 78 58 3 chr9 8814629 8814924 -133456520 - AluY SINE Alu 0 311 1 2299 258 92 8 chr9 8815815 8816567 -133454877 - MER21B LTR ERV1 0 863 49 276 294 0 0 chr9 8816578 8816646 -133454798 - MER21B LTR ERV1 -777 86 19 285 244 37 0 chr9 8816759 8816841 -133454603 + MLT1E2 LTR MaLR 124 208 -418 248 259 0 0 chr9 8817163 8817221 -133454223 + MARNA DNA Mariner 436 493 -93 1883 184 47 19 chr9 8818264 8818629 -133452815 + THE1C LTR MaLR 1 375 0 1274 193 28 0 chr9 8820040 8820252 -133451192 + MER20 DNA MER1_type 1 218 -1 22 0 0 0 chr9 8821420 8821442 -133450002 + GC_rich Low_complexity Low_complexity 1 22 0 392 330 84 0 chr9 8822125 8822304 -133449140 + MIR SINE MIR 43 236 -26 279 363 9 9 chr9 8823020 8823133 -133448311 + L3 LINE CR1 1417 1529 -48 495 244 154 5 chr9 8823160 8823361 -133448083 + MER113 DNA MER1_type? 61 291 -230 206 295 33 0 chr9 8825487 8825548 -133445896 - MER91B DNA MER1_type -127 63 1 569 209 157 5 chr9 8825555 8825765 -133445679 - MLT1D LTR MaLR -157 348 107 372 277 108 19 chr9 8826553 8826766 -133444678 - LTR16A LTR ERVL -17 433 202 255 168 76 0 chr9 8826840 8826959 -133444485 + (CAGGA)n Simple_repeat Simple_repeat 3 130 0 242 272 48 24 chr9 8826959 8827084 -133444360 + (CGGGA)n Simple_repeat Simple_repeat 3 130 0 1732 231 86 25 chr9 8830488 8830978 -133440466 - MLT2B1 LTR ERVL 0 520 1 2659 104 8 29 chr9 8831550 8831933 -133439511 + THE1C LTR MaLR 1 375 0 441 104 42 52 chr9 8833668 8833764 -133437680 - L1MA8 LINE L1 -1 6290 6196 234 245 28 56 chr9 8837570 8837713 -133433731 + GA-rich Low_complexity Low_complexity 3 141 0 203 222 0 37 chr9 8839837 8839891 -133431553 - MIR SINE MIR -64 144 93 201 244 0 0 chr9 8840066 8840111 -133431333 + (TGAG)n Simple_repeat Simple_repeat 4 48 0 193 260 188 0 chr9 8840641 8840737 -133430707 - MIR SINE MIR -128 134 21 234 188 14 110 chr9 8841122 8841209 -133430235 - MIR SINE MIR -61 147 86 3165 142 45 215 chr9 8845793 8847158 -133424286 + L1 LINE L1 3240 4372 -1774 2049 122 7 0 chr9 8847159 8847453 -133423991 + AluSq SINE Alu 1 296 -17 404 259 29 43 chr9 8847457 8847596 -133423848 - L2 LINE L2 -256 3057 2921 5156 284 40 19 chr9 8847721 8849820 -133421624 - L1P LINE L1 -2537 3609 1466 261 247 53 94 chr9 8850422 8850592 -133420852 + LTR67 LTR ERVL 381 543 -14 214 239 15 15 chr9 8850698 8850765 -133420679 + (TA)n Simple_repeat Simple_repeat 2 68 0 204 179 0 0 chr9 8850882 8850921 -133420523 + T-rich Low_complexity Low_complexity 1 39 0 25 0 0 0 chr9 8851407 8851432 -133420012 + AT_rich Low_complexity Low_complexity 1 25 0 379 256 175 0 chr9 8851650 8851787 -133419657 - MIR SINE MIR -2 260 100 220 158 26 0 chr9 8852520 8852558 -133418886 + L2 LINE L2 3264 3302 -11 906 231 54 0 chr9 8855032 8855218 -133416226 + Tigger7 DNA MER2_type 7 202 -503 713 278 27 0 chr9 8855433 8855656 -133415788 + Tigger7 DNA MER2_type 191 419 -2068 667 149 90 70 chr9 8856415 8856616 -133414828 - MLT1C LTR MaLR -231 236 32 252 258 0 0 chr9 8857547 8857609 -133413835 - MER2 DNA MER2_type -1 344 283 241 290 0 0 chr9 8857585 8857654 -133413790 - MER8 DNA MER2_type -60 179 111 * 425 242 121 0 chr9 8857767 8857916 -133413528 + MLT1F1 LTR MaLR 1 167 -223 476 264 142 44 chr9 8858746 8859041 -133412403 + MLT1F1 LTR MaLR 244 567 0 672 198 20 10 chr9 8859429 8859600 -133411844 - MLT1A1 LTR MaLR -175 190 15 288 207 198 0 chr9 8859921 8860032 -133411412 + MLT1K LTR MaLR 431 563 -25 729 262 72 20 chr9 8861162 8861639 -133409805 - MER77 LTR ERV1 -4 601 58 247 176 0 39 chr9 8863380 8863431 -133408013 - L2 LINE L2 -5 3267 3219 2325 241 49 29 chr9 8864438 8864570 -133406874 + MER67C LTR ERV1 1 129 -581 2074 96 13 3 chr9 8864570 8864872 -133406572 - AluSc SINE Alu -4 305 1 2325 241 49 29 chr9 8864872 8865435 -133406009 + MER67C LTR ERV1 129 710 0 2020 101 3 3 chr9 8866041 8866327 -133405117 + AluSg1 SINE Alu 1 286 -23 2179 101 53 71 chr9 8866506 8866725 -133404719 + MER51A LTR ERV1 1 222 -412 238 67 44 0 chr9 8866725 8866770 -133404674 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 1974 125 0 20 chr9 8866773 8867077 -133404367 - AluSx SINE Alu -14 298 1 2179 101 53 71 chr9 8867077 8867403 -133404041 + MER51A LTR ERV1 224 634 0 2400 234 51 43 chr9 8867794 8868546 -133402898 - L1M4 LINE L1 -1778 4368 3608 1226 171 98 29 chr9 8868546 8868821 -133402623 - AluJb SINE Alu -18 294 1 2400 234 51 43 chr9 8868821 8868832 -133402612 - L1M4 LINE L1 -2538 3608 3599 723 244 80 20 chr9 8868827 8869028 -133402416 - L1MD2 LINE L1 -16 6343 6131 * 266 197 237 0 chr9 8869270 8869346 -133402098 - L1MD2 LINE L1 -543 5699 5606 480 239 22 29 chr9 8869401 8869539 -133401905 - L1M4 LINE L1 -2595 3551 3415 237 300 51 74 chr9 8869774 8870031 -133401413 + MLT1-int LTR MaLR 1114 1364 -7 6076 18 0 0 chr9 8870237 8870914 -133400530 - L1PA3 LINE L1 -16 6139 5463 * 7326 36 18 0 chr9 8870911 8871894 -133399550 + L1PA4 LINE L1 5149 6147 -8 2192 67 7 24 chr9 8872034 8872332 -133399112 + AluY SINE Alu 1 293 -18 201 74 0 0 chr9 8872396 8872423 -133399021 + (TA)n Simple_repeat Simple_repeat 2 28 0 271 279 52 22 chr9 8872499 8872635 -133398809 - L1MC/D LINE L1 -1928 5880 5741 5588 72 3 0 chr9 8872791 8873499 -133397945 - L1PA7 LINE L1 -3 6151 5442 5205 156 41 1 chr9 8874202 8875203 -133396241 - L1PA16 LINE L1 -9 6157 5116 180 0 0 0 chr9 8875405 8875425 -133396019 + (T)n Simple_repeat Simple_repeat 1 20 0 380 326 116 31 chr9 8876585 8876843 -133394601 - L2 LINE L2 -3 3310 3031 426 262 121 7 chr9 8878232 8878373 -133393071 + MER5A DNA MER1_type 33 189 0 1905 135 0 3 chr9 8878871 8879160 -133392284 - AluJb SINE Alu -16 296 9 236 375 22 52 chr9 8881143 8881279 -133390165 + MIR SINE MIR 19 150 -58 204 326 102 0 chr9 8881476 8881574 -133389870 + MIR SINE MIR 152 259 -3 1807 77 151 4 chr9 8883068 8883327 -133388117 - AluY SINE Alu -3 298 2 344 257 38 0 chr9 8883643 8883748 -133387696 + MER103 DNA DNA 1 109 -57 23 0 0 0 chr9 8885221 8885244 -133386200 + AT_rich Low_complexity Low_complexity 1 23 0 295 284 40 14 chr9 8887364 8887438 -133384006 + MIR SINE MIR 32 107 -155 235 311 66 25 chr9 8888080 8888202 -133383242 - L2 LINE L2 0 3313 3187 712 316 112 54 chr9 8889492 8890453 -133380991 + L2 LINE L2 2297 3313 0 1905 149 0 10 chr9 8891015 8891323 -133380121 - AluSx SINE Alu -3 309 5 24 0 0 0 chr9 8891537 8891561 -133379883 + AT_rich Low_complexity Low_complexity 1 24 0 24 32 0 0 chr9 8891870 8891901 -133379543 + AT_rich Low_complexity Low_complexity 1 31 0 1578 189 70 83 chr9 8892292 8892774 -133378670 - LTR8 LTR ERV1 -215 476 1 2000 111 10 0 chr9 8892860 8893157 -133378287 - AluSq SINE Alu -12 301 2 1012 149 28 11 chr9 8894158 8894339 -133377105 + MER5A DNA MER1_type 6 189 0 498 147 138 0 chr9 8894394 8894503 -133376941 + MER53 DNA DNA 3 126 -63 1866 153 73 14 chr9 8896402 8896756 -133374688 + THE1C LTR MaLR 1 375 0 219 277 117 51 chr9 8897469 8897606 -133373838 + L2 LINE L2 3166 3311 -2 872 359 87 11 chr9 8898354 8898883 -133372561 - MLT1K LTR MaLR -3 585 17 180 378 14 0 chr9 8898953 8899027 -133372417 - L2 LINE L2 -218 3054 2980 395 330 16 68 chr9 8899125 8899316 -133372128 + MER5A DNA MER1_type 7 187 -2 342 275 0 0 chr9 8899372 8899452 -133371992 - L2 LINE L2 0 3313 3234 616 174 232 7 chr9 8899478 8899616 -133371828 - MER45A DNA AcHobo -9 169 1 890 170 105 0 chr9 8899880 8900051 -133371393 + MER5A DNA MER1_type 1 189 0 4993 116 26 8 chr9 8900932 8902241 -133369203 + L1PA14 LINE L1 4781 6158 -3 348 212 68 25 chr9 8903050 8903168 -133368276 - MLT1K LTR MaLR -47 541 419 243 218 0 0 chr9 8903216 8903271 -133368173 - MLT1K LTR MaLR -158 430 376 2117 139 0 3 chr9 8903528 8903831 -133367613 - AluSx SINE Alu -10 302 1 327 49 0 0 chr9 8904246 8904287 -133367157 + (CA)n Simple_repeat Simple_repeat 2 42 0 33 80 0 0 chr9 8905136 8905211 -133366233 + AT_rich Low_complexity Low_complexity 1 75 0 184 283 43 0 chr9 8905420 8905466 -133365978 + L2 LINE L2 1835 1882 -1432 214 241 60 60 chr9 8906360 8906443 -133365001 - MIR SINE MIR -56 206 124 1574 162 19 4 chr9 8906449 8906715 -133364729 + MLT1A1 LTR MaLR 1 270 -95 3552 266 44 20 chr9 8906830 8908247 -133363197 + L1M4 LINE L1 3213 4663 -1483 1231 179 70 5 chr9 8909263 8909526 -133361918 - L1MD2 LINE L1 -21 7752 6172 227 176 0 0 chr9 8909529 8909563 -133361881 + Charlie3 DNA MER1_type 1 34 -2676 4297 168 29 20 chr9 8909728 8910076 -133361368 - L1MB5 LINE L1 0 6174 5830 1860 150 0 32 chr9 8910076 8910390 -133361054 - AluJb SINE Alu -8 304 1 4297 168 29 20 chr9 8910390 8910883 -133360561 - L1MB5 LINE L1 -344 5830 5326 1721 168 31 17 chr9 8910896 8911188 -133360256 - AluJb SINE Alu -16 296 1 1857 167 0 16 chr9 8911194 8911506 -133359938 - AluJo SINE Alu -5 307 1 1636 196 28 0 chr9 8911511 8911797 -133359647 - AluJb SINE Alu -18 294 1 230 170 0 0 chr9 8911804 8911851 -133359593 - L1MB5 LINE L1 -834 5328 5282 909 236 41 20 chr9 8911854 8912197 -133359247 - L1M4c LINE L1 -4071 2313 1964 2463 111 17 37 chr9 8912381 8912785 -133358659 - HERVK9 LTR ERVK -5520 396 1 3370 125 2 6 chr9 8912785 8913282 -133358162 - MER9 LTR ERVK 0 511 17 8024 157 18 8 chr9 8913439 8914824 -133356620 + Tigger1 DNA MER2_type 1 1399 -1019 2049 92 4 0 chr9 8914926 8915186 -133356258 - AluSq SINE Alu -50 263 3 303 167 24 60 chr9 8915538 8915622 -133355822 - L1M4 LINE L1 -3170 2976 2896 6462 26 3 0 chr9 8915731 8916491 -133354953 + L1PA2 LINE L1 5391 6152 -3 280 179 155 12 chr9 8917091 8917175 -133354269 - MER33 DNA MER1_type -224 100 5 200 309 49 81 chr9 8918209 8918332 -133353112 + L2 LINE L2 3187 3305 -8 412 330 59 39 chr9 8919803 8920006 -133351438 - MIR SINE MIR -7 255 49 573 320 64 27 chr9 8920371 8920788 -133350656 + L1ME3A LINE L1 5268 5689 -520 204 204 37 0 chr9 8920789 8920843 -133350601 + (TA)n Simple_repeat Simple_repeat 2 57 0 310 374 36 12 chr9 8920919 8921085 -133350359 + L1ME3A LINE L1 5728 5897 -273 207 365 81 0 chr9 8921526 8921600 -133349844 - L2 LINE L2 -223 3049 2970 301 302 63 32 chr9 8921830 8921956 -133349488 - MLT1J LTR MaLR 0 511 382 1523 237 91 24 chr9 8921962 8922419 -133349025 + MLT2B1 LTR ERVL 1 534 -20 224 182 0 18 chr9 8922425 8922480 -133348964 + CT-rich Low_complexity Low_complexity 1 54 0 221 147 0 0 chr9 8922481 8922515 -133348929 + (TC)n Simple_repeat Simple_repeat 2 35 0 388 318 95 34 chr9 8922536 8922800 -133348644 - MLT1J LTR MaLR -226 285 6 2243 259 10 19 chr9 8923728 8924242 -133347202 - MLT1F LTR MaLR -6 536 28 2562 177 18 11 chr9 8924592 8925032 -133346412 + L1PA13 LINE L1 2 444 -6343 368 95 16 32 chr9 8925132 8925195 -133346249 - MER30 DNA MER1_type -162 68 7 3993 118 3 0 chr9 8925201 8925779 -133345665 + Tigger1 DNA MER2_type 1461 2040 -378 288 243 0 0 chr9 8926668 8926742 -133344702 + (CATATA)n Simple_repeat Simple_repeat 4 77 0 268 338 110 15 chr9 8926898 8927034 -133344410 - MIR SINE MIR -109 153 5 380 145 0 0 chr9 8927358 8927420 -133344024 + MSTB1 LTR MaLR 344 405 -27 22 0 0 0 chr9 8929944 8929966 -133341478 + AT_rich Low_complexity Low_complexity 1 22 0 6071 55 3 10 chr9 8930070 8930899 -133340545 + L1P3 LINE L1 2 953 -5193 471 281 99 18 chr9 8930999 8931170 -133340274 - L2 LINE L2 -40 3273 3089 863 183 91 6 chr9 8931172 8931347 -133340097 + MER58A DNA MER1_type 25 214 -10 483 273 107 0 chr9 8931356 8931506 -133339938 - L2 LINE L2 -504 2810 2645 1297 86 15 40 chr9 8931506 8931704 -133339740 - MER30 DNA MER1_type -37 193 1 840 321 11 4 chr9 8931824 8932101 -133339343 - L2 LINE L2 -861 2453 2175 216 0 0 0 chr9 8932103 8932127 -133339317 + (T)n Simple_repeat Simple_repeat 1 24 0 189 216 0 0 chr9 8932428 8932465 -133338979 - MIR SINE MIR -3 259 223 5561 65 39 0 chr9 8932810 8933547 -133337897 + L1PA7 LINE L1 5386 6151 -3 265 276 52 22 chr9 8933703 8933837 -133337607 + L1MC/D LINE L1 5741 5878 -1930 201 74 0 0 chr9 8933915 8933942 -133337502 + (TA)n Simple_repeat Simple_repeat 2 28 0 1866 62 8 29 chr9 8934006 8934250 -133337194 - AluY SINE Alu -18 293 55 7073 181 13 21 chr9 8934350 8936546 -133334898 + L1PA13 LINE L1 3944 6145 -18 779 251 0 26 chr9 8936583 8936774 -133334670 + AluJb SINE Alu 127 312 0 645 274 88 18 chr9 8937061 8937401 -133334043 + L1ME3A LINE L1 4037 4400 -1746 1100 278 168 10 chr9 8937411 8937994 -133333450 + L1ME3A LINE L1 4573 5247 -899 2305 246 71 24 chr9 8938067 8938621 -133332823 + L1ME3A LINE L1 5274 5883 -287 782 230 99 5 chr9 8938621 8938812 -133332632 - MER63A DNA MER1_type -1 209 1 2305 246 71 24 chr9 8938812 8939106 -133332338 + L1ME3A LINE L1 5883 6162 -8 905 191 12 0 chr9 8939161 8939323 -133332121 - MER58B DNA MER1_type -5 336 173 240 289 45 58 chr9 8939392 8939548 -133331896 - MIR3 SINE MIR -25 183 30 592 191 0 116 chr9 8939716 8939830 -133331614 + L1MA9 LINE L1 6105 6189 -123 2231 90 0 0 chr9 8939830 8940144 -133331300 - AluSc SINE Alu 0 316 3 592 191 0 116 chr9 8940144 8940227 -133331217 + L1MA9 LINE L1 6189 6280 -32 23 54 0 0 chr9 8940530 8940567 -133330877 + AT_rich Low_complexity Low_complexity 1 37 0 3382 133 57 25 chr9 8941398 8942031 -133329413 - MER39B LTR ERV1 0 653 1 583 76 0 0 chr9 8942509 8942639 -133328805 - AluSg/x SINE Alu 0 333 204 268 250 0 0 chr9 8943571 8943631 -133327813 + Charlie8 DNA MER1_type 2357 2416 -1 1879 181 25 27 chr9 8943967 8944375 -133327069 - L1MA10 LINE L1 -13 6321 5915 1483 312 57 40 chr9 8944543 8945249 -133326195 - L3 LINE CR1 -99 1478 761 641 313 96 24 chr9 8945324 8945742 -133325702 + MLT1H LTR MaLR 102 549 0 366 350 87 15 chr9 8946600 8946806 -133324638 + MIR SINE MIR 1 221 -41 265 267 120 0 chr9 8946926 8947001 -133324443 - MLT1J LTR MaLR -142 369 286 974 247 126 40 chr9 8947308 8947985 -133323459 - L1MEc LINE L1 -4813 1583 849 1333 275 61 7 chr9 8948003 8948446 -133322998 - L1MEc LINE L1 -5640 756 290 187 336 101 40 chr9 8948446 8948595 -133322849 - MER5A DNA MER1_type -16 173 16 208 352 66 9 chr9 8948786 8948979 -133322465 + MIR SINE MIR 18 221 -41 387 324 101 26 chr9 8949072 8949378 -133322066 - HAL1 LINE L1 -1353 1154 826 780 179 0 22 chr9 8949678 8949862 -133321582 + CT-rich Low_complexity Low_complexity 1 180 0 1909 161 0 13 chr9 8950362 8950667 -133320777 + AluJb SINE Alu 3 303 -9 243 204 0 0 chr9 8950991 8951045 -133320399 + (TATATG)n Simple_repeat Simple_repeat 4 57 0 2851 12 0 6 chr9 8951470 8951790 -133319654 + AluYb8 SINE Alu 1 318 0 22 0 0 0 chr9 8953224 8953246 -133318198 + AT_rich Low_complexity Low_complexity 1 22 0 511 163 273 5 chr9 8954213 8954332 -133317112 + MSTA LTR MaLR 1 151 -241 400 357 78 0 chr9 8955149 8955303 -133316141 - L2 LINE L2 -1 3271 3106 518 243 41 18 chr9 8955425 8955857 -133315587 + LTR33 LTR ERVL 3 521 0 228 195 0 0 chr9 8956082 8956123 -133315321 + MER34 LTR ERV1 6 46 -496 1491 187 127 19 chr9 8956181 8956550 -133314894 + MER39 LTR ERV1 290 698 -9 1938 227 38 47 chr9 8956593 8957169 -133314275 + MLT1E3 LTR MaLR 4 574 -50 1092 173 25 0 chr9 8957454 8957651 -133313793 + MER3 DNA MER1_type 3 204 -5 3109 131 15 27 chr9 8957750 8958157 -133313287 - L1PA16 LINE L1 0 6166 5766 180 0 0 0 chr9 8958157 8958177 -133313267 + (TTTA)n Simple_repeat Simple_repeat 4 23 0 3109 131 15 27 chr9 8958177 8958318 -133313126 - L1PA16 LINE L1 -400 5766 5625 22 0 0 0 chr9 8958353 8958375 -133313069 + AT_rich Low_complexity Low_complexity 1 22 0 211 350 114 24 chr9 8958585 8958708 -133312736 + MIR3 SINE MIR 13 146 -62 22 35 0 0 chr9 8958923 8958952 -133312492 + AT_rich Low_complexity Low_complexity 1 29 0 333 0 0 0 chr9 8959683 8959720 -133311724 + (TC)n Simple_repeat Simple_repeat 2 38 0 346 232 61 0 chr9 8959732 8959814 -133311630 - L1MC4 LINE L1 -1339 6703 6617 999 228 97 28 chr9 8960629 8961102 -133310342 + Charlie4a DNA MER1_type 3 508 0 407 312 153 27 chr9 8961360 8961732 -133309712 - MLT1L LTR MaLR -54 561 143 355 365 76 25 chr9 8962972 8963249 -133308195 + L2 LINE L2 2977 3267 -5 288 169 15 0 chr9 8966829 8966894 -133304550 + MADE1 DNA Mariner 14 79 -1 823 51 0 0 chr9 8967290 8967388 -133304056 + L1PA4 LINE L1 1 98 -6048 * 38668 40 6 0 chr9 8967386 8972893 -133298551 + L1PA4 LINE L1 623 6161 0 875 173 21 37 chr9 8974003 8974194 -133297250 + MER5A DNA MER1_type 2 189 0 262 306 86 27 chr9 8974551 8974773 -133296671 - L1MC4 LINE L1 -1960 5848 5614 566 186 9 9 chr9 8974786 8974899 -133296545 + MER74A LTR ERVL 1 113 -445 1959 219 16 26 chr9 8974950 8975375 -133296069 + MER74B LTR ERVL 176 596 -26 326 208 78 0 chr9 8975605 8975682 -133295762 + L1MC4 LINE L1 6621 6703 -1339 333 0 0 0 chr9 8975694 8975731 -133295713 + (GA)n Simple_repeat Simple_repeat 2 38 0 2728 231 44 5 chr9 8976414 8977167 -133294277 + L1ME1 LINE L1 3981 4762 -1384 2006 129 0 0 chr9 8977820 8978099 -133293345 + AluSx SINE Alu 1 279 -33 249 108 0 0 chr9 8978099 8978136 -133293308 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 837 271 48 36 chr9 8978547 8978798 -133292646 + MIR SINE MIR 8 261 -1 2355 192 48 43 chr9 8978850 8979635 -133291809 + L1ME1 LINE L1 4801 5623 -543 444 213 0 0 chr9 8979635 8979715 -133291729 + AluJ/FLAM SINE Alu 5 84 -228 2355 192 48 43 chr9 8979715 8979965 -133291479 + L1ME1 LINE L1 5623 5870 -296 3934 172 18 1 chr9 8979967 8981129 -133290315 - L1M2 LINE L1 -490 5822 4647 193 329 96 0 chr9 8981154 8981227 -133290217 - MIR SINE MIR -109 153 74 191 388 36 24 chr9 8981589 8981754 -133289690 + L2 LINE L2 2887 3053 -219 383 324 71 24 chr9 8983365 8983535 -133287909 + MER5B DNA MER1_type 1 178 0 231 94 0 0 chr9 8984019 8984051 -133287393 - L2 LINE L2 -259 3054 3023 193 303 0 15 chr9 8984063 8984129 -133287315 + L2 LINE L2 3249 3313 0 227 299 55 24 chr9 8984235 8984362 -133287082 - L2 LINE L2 -481 2833 2703 989 249 155 22 chr9 8984409 8984855 -133286589 - L2 LINE L2 -590 2724 2220 207 241 12 60 chr9 8984901 8984984 -133286460 + CT-rich Low_complexity Low_complexity 5 83 0 252 203 34 17 chr9 8985102 8985161 -133286283 + MIR SINE MIR 82 141 -67 2261 221 21 0 chr9 8985439 8985906 -133285538 + LTR53 LTR ERVL 1 477 -42 1828 125 3 42 chr9 8985921 8986208 -133285236 + AluSq SINE Alu 1 276 -37 693 194 17 6 chr9 8986210 8986385 -133285059 + GA-rich Low_complexity Low_complexity 3 179 0 2263 85 0 10 chr9 8986426 8986720 -133284724 - AluY SINE Alu -20 291 1 2133 112 3 38 chr9 8986720 8987034 -133284410 - AluSx SINE Alu -1 311 9 459 313 107 21 chr9 8987038 8987271 -133284173 + MLT1I LTR MaLR 150 402 -7 769 180 97 44 chr9 8987530 8987736 -133283708 - MER20 DNA MER1_type -2 217 1 2078 104 42 0 chr9 8988543 8988830 -133282614 + AluY SINE Alu 1 299 -12 24 0 0 0 chr9 8990527 8990551 -133280893 + AT_rich Low_complexity Low_complexity 1 24 0 308 197 0 45 chr9 8990682 8990748 -133280696 + L2 LINE L2 3249 3311 -2 412 240 50 0 chr9 8991767 8991867 -133279577 - L2 LINE L2 -4 3309 3205 * 1545 278 42 24 chr9 8991865 8992362 -133279082 - L2 LINE L2 -500 2814 2309 293 327 137 29 chr9 8992386 8992664 -133278780 - L2 LINE L2 -1 3312 3005 1487 127 27 0 chr9 8992695 8992916 -133278528 + MER30 DNA MER1_type 4 230 0 269 121 52 0 chr9 8993942 8994000 -133277444 + HSMAR1 DNA Mariner 1227 1287 0 319 261 8 75 chr9 8996027 8996161 -133275283 + MIR SINE MIR 88 212 -50 296 244 9 61 chr9 8997110 8997225 -133274219 + MLT1L LTR MaLR 387 495 -120 230 340 29 10 chr9 8997302 8997405 -133274039 + L2 LINE L2 3181 3285 -28 189 0 0 0 chr9 8997601 8997622 -133273822 + (T)n Simple_repeat Simple_repeat 1 21 0 282 250 100 0 chr9 8998683 8998783 -133272661 - L1ME LINE L1 -381 5740 5631 2250 121 36 33 chr9 8999841 9000204 -133271240 + THE1B LTR MaLR 1 364 0 25 31 0 0 chr9 9002222 9002254 -133269190 + AT_rich Low_complexity Low_complexity 1 32 0 533 309 104 17 chr9 9002397 9002627 -133268817 + MIR SINE MIR 12 261 -1 314 315 35 35 chr9 9002949 9003092 -133268352 + MIR3 SINE MIR 41 183 -25 378 0 0 0 chr9 9003767 9003809 -133267635 + (CA)n Simple_repeat Simple_repeat 2 43 0 229 203 31 31 chr9 9003905 9003969 -133267475 + G-rich Low_complexity Low_complexity 1 64 0 791 305 4 21 chr9 9004496 9004735 -133266709 - MIR SINE MIR -25 237 3 1218 231 34 0 chr9 9004980 9005274 -133266170 - L1ME1 LINE L1 -6 6160 5857 812 146 22 14 chr9 9005279 9005618 -133265826 + CT-rich Low_complexity Low_complexity 1 341 0 1540 163 22 22 chr9 9005644 9005921 -133265523 - AluJo SINE Alu -3 309 33 1367 185 48 0 chr9 9005921 9006191 -133265253 - L1ME1 LINE L1 -307 5859 5577 1243 198 39 61 chr9 9006374 9006784 -133264660 + MER39 LTR ERV1 307 707 0 730 195 12 12 chr9 9006784 9006953 -133264491 - L1ME1 LINE L1 -583 5583 5415 196 293 0 35 chr9 9007492 9007550 -133263894 + MER5A DNA MER1_type 45 100 -89 215 179 0 0 chr9 9007568 9007607 -133263837 + L2 LINE L2 3257 3295 -18 2012 151 0 3 chr9 9007800 9008104 -133263340 + AluSx SINE Alu 1 303 -9 978 70 0 56 chr9 9008106 9008249 -133263195 + AluY SINE Alu 175 309 -2 216 0 0 0 chr9 9008629 9008653 -133262791 + (A)n Simple_repeat Simple_repeat 1 24 0 216 240 133 93 chr9 9009795 9009945 -133261499 + MER5A DNA MER1_type 34 189 0 324 93 19 0 chr9 9010018 9010072 -133261372 - L1PB2 LINE L1 -2 6149 6095 503 265 7 52 chr9 9010075 9010141 -133261303 - L2 LINE L2 -9 3263 3204 1725 208 43 41 chr9 9010141 9010607 -133260837 - MLT1C LTR MaLR 0 467 1 503 265 7 52 chr9 9010607 9010676 -133260768 - L2 LINE L2 -68 3204 3134 211 292 150 0 chr9 9011578 9011691 -133259753 - MIR SINE MIR -5 257 128 23 33 0 0 chr9 9012901 9012931 -133258513 + AT_rich Low_complexity Low_complexity 1 30 0 330 383 6 16 chr9 9013598 9013781 -133257663 + MIR SINE MIR 8 188 -74 459 254 47 41 chr9 9015274 9015332 -133256112 - LTR67 LTR ERVL -293 264 208 1522 105 0 0 chr9 9015332 9015532 -133255912 - AluSg/x SINE Alu -2 308 109 459 254 47 41 chr9 9015532 9015642 -133255802 - LTR67 LTR ERVL -349 208 95 207 0 0 0 chr9 9015657 9015680 -133255764 + (A)n Simple_repeat Simple_repeat 1 23 0 2952 271 105 56 chr9 9015802 9016593 -133254851 + L2 LINE L2 1511 2393 -921 2316 77 10 3 chr9 9016593 9016892 -133254552 + AluSg SINE Alu 1 301 -9 2952 271 105 56 chr9 9016892 9017416 -133254028 + L2 LINE L2 2393 2890 -424 186 194 0 0 chr9 9017634 9017665 -133253779 - L2 LINE L2 -23 3249 3219 2438 91 0 0 chr9 9017998 9018307 -133253137 + AluSc SINE Alu 1 309 0 318 26 0 0 chr9 9018694 9018733 -133252711 + (CA)n Simple_repeat Simple_repeat 2 40 0 224 307 40 0 chr9 9018923 9018998 -133252446 - MIR SINE MIR -14 248 171 323 217 17 104 chr9 9020851 9020966 -133250478 - MIR SINE MIR -108 154 50 1922 128 45 0 chr9 9021216 9021505 -133249939 + AluSg SINE Alu 1 302 -8 428 222 126 29 chr9 9021553 9021760 -133249684 - HAL1 LINE L1 -5 2502 2276 581 290 80 8 chr9 9021836 9022074 -133249370 - L2 LINE L2 0 3313 3059 1929 228 120 86 chr9 9022074 9023392 -133248052 - HAL1 LINE L1 -331 2176 814 2579 52 3 0 chr9 9023774 9024082 -133247362 - AluY SINE Alu -2 309 1 216 200 0 0 chr9 9024335 9024380 -133247064 + (TA)n Simple_repeat Simple_repeat 1 45 0 235 0 0 54 chr9 9026223 9026260 -133245184 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 233 330 28 28 chr9 9027032 9027138 -133244306 + L2 LINE L2 3158 3263 -50 322 282 101 32 chr9 9027476 9027603 -133243841 - MER5B DNA MER1_type -39 150 5 195 329 53 26 chr9 9027893 9027969 -133243475 - MIR SINE MIR -162 100 23 353 330 98 15 chr9 9028774 9028977 -133242467 - MIR SINE MIR -34 228 9 650 255 51 23 chr9 9029542 9029776 -133241668 - MIR SINE MIR -23 239 3 188 35 35 0 chr9 9031442 9031471 -133239973 + (TAA)n Simple_repeat Simple_repeat 1 30 0 279 288 68 38 chr9 9033267 9033399 -133238045 - L2 LINE L2 0 3272 3137 369 299 149 8 chr9 9035096 9035230 -133236214 - MER5A DNA MER1_type -6 183 31 380 226 66 9 chr9 9036209 9036315 -133235129 + MER117 DNA MER1_type 7 118 -79 306 270 45 0 chr9 9036503 9036592 -133234852 - L2 LINE L2 0 3313 3221 8416 213 39 25 chr9 9037763 9039554 -133231890 - L1MC1 LINE L1 0 6333 4569 2480 62 0 0 chr9 9039554 9039869 -133231575 + AluSc SINE Alu 1 315 0 8416 213 39 25 chr9 9039869 9041888 -133229556 - L1MC1 LINE L1 -1764 4569 2460 1948 166 77 0 chr9 9042294 9042632 -133228812 - THE1B LTR MaLR 0 364 1 11498 103 5 2 chr9 9042632 9044207 -133227237 - THE1B-int LTR MaLR 0 1580 1 2065 108 108 15 chr9 9044207 9044540 -133226904 - THE1B LTR MaLR 0 364 1 281 294 49 10 chr9 9044833 9044935 -133226509 - MIR SINE MIR -94 168 63 820 230 8 6 chr9 9045090 9045314 -133226130 - L1PA16 LINE L1 -5 6146 5921 475 287 84 0 chr9 9045754 9045897 -133225547 + MIR SINE MIR 89 243 -19 288 274 168 9 chr9 9045906 9046019 -133225425 - MER94 DNA DNA -1 133 3 589 316 92 5 chr9 9047064 9047270 -133224174 + MIR SINE MIR 29 252 -10 497 309 48 30 chr9 9047522 9047687 -133223757 - MIR SINE MIR -77 185 18 325 375 8 0 chr9 9048039 9048159 -133223285 - MIR SINE MIR -65 143 23 198 0 0 0 chr9 9048526 9048548 -133222896 + (CAAAA)n Simple_repeat Simple_repeat 3 24 0 1166 212 29 67 chr9 9050066 9050457 -133220987 + MLT1B LTR MaLR 1 342 -32 403 331 73 17 chr9 9050892 9050979 -133220465 + MIR SINE MIR 65 146 -116 1612 171 72 17 chr9 9050979 9051325 -133220119 - MLT1A1 LTR MaLR 0 365 1 403 331 73 17 chr9 9051325 9051415 -133220029 + MIR SINE MIR 146 252 -10 280 310 80 10 chr9 9051993 9052093 -133219351 - MIR SINE MIR -72 190 84 369 198 0 47 chr9 9052852 9052938 -133218506 - MIR SINE MIR -5 257 176 980 273 112 12 chr9 9053440 9053858 -133217586 + LTR16B LTR ERVL 1 460 -4 21 0 0 0 chr9 9054915 9054936 -133216508 + AT_rich Low_complexity Low_complexity 1 21 0 928 186 60 5 chr9 9056168 9056367 -133215077 + MER6B DNA MER2_type 1 210 0 2328 192 29 5 chr9 9056741 9057148 -133214296 + MLT2C2 LTR ERVL 7 427 -37 432 0 0 0 chr9 9057148 9057196 -133214248 + (CA)n Simple_repeat Simple_repeat 2 49 0 2328 192 29 5 chr9 9057196 9057235 -133214209 + MLT2C2 LTR ERVL 427 464 0 323 106 0 0 chr9 9058223 9058270 -133213174 - L2 LINE L2 0 3313 3267 2894 6 0 6 chr9 9058415 9058735 -133212709 + AluYb8 SINE Alu 1 318 0 22 0 0 0 chr9 9060169 9060191 -133211253 + AT_rich Low_complexity Low_complexity 1 22 0 2023 151 137 11 chr9 9061173 9061538 -133209906 + MSTA LTR MaLR 18 428 0 652 139 9 0 chr9 9061538 9061646 -133209798 + MSTA-int LTR MaLR 1 109 -1542 * 1779 128 7 14 chr9 9061641 9061931 -133209513 + MSTA-int LTR MaLR 1293 1580 0 2217 144 105 5 chr9 9061931 9062320 -133209124 + MSTA LTR MaLR 1 428 0 1090 278 86 24 chr9 9062827 9063198 -133208246 - MLT1J1 LTR MaLR -45 401 8 326 298 35 26 chr9 9064445 9064559 -133206885 - LTR67 LTR ERVL -6 551 437 1867 165 71 10 chr9 9064919 9065313 -133206131 + LTR52 LTR ERVL 1 418 -3 181 191 0 29 chr9 9066005 9066073 -133205371 + GA-rich Low_complexity Low_complexity 3 68 0 245 295 0 108 chr9 9066246 9066385 -133205059 - L3 LINE CR1 -21 1556 1433 229 402 21 0 chr9 9068174 9068271 -133203173 - MIR SINE MIR -142 120 22 355 240 88 2 chr9 9068521 9068640 -133202804 - MIR SINE MIR -67 141 13 295 312 65 14 chr9 9068677 9068815 -133202629 + MIR SINE MIR 67 211 -51 1069 202 10 5 chr9 9069163 9069371 -133202073 + MER2 DNA MER2_type 2 210 -135 23 54 0 0 chr9 9069381 9069418 -133202026 + AT_rich Low_complexity Low_complexity 1 37 0 353 269 67 10 chr9 9069510 9069614 -133201830 - MIR SINE MIR -102 160 51 7144 216 91 22 chr9 9069649 9070097 -133201347 - L1MB3 LINE L1 -2 6417 6001 2492 162 16 2 chr9 9070097 9070523 -133200921 + MSTB1 LTR MaLR 1 432 0 7144 216 91 22 chr9 9070523 9071786 -133199658 - L1MB3 LINE L1 -418 6001 4826 2065 132 0 0 chr9 9071786 9072097 -133199347 - AluSc SINE Alu 0 311 1 7144 216 91 22 chr9 9072097 9073158 -133198286 - L1MB3 LINE L1 -1593 4826 3839 1676 146 0 4 chr9 9073158 9073405 -133198039 - AluSx SINE Alu -66 246 1 7144 216 91 22 chr9 9073405 9075379 -133196065 - L1MB3 LINE L1 -2580 3839 1340 857 211 43 24 chr9 9075386 9075594 -133195850 + AluJo SINE Alu 84 295 -17 5375 172 147 18 chr9 9075616 9076784 -133194660 - L1MB3 LINE L1 -5044 1340 22 198 0 0 0 chr9 9077330 9077352 -133194092 + (T)n Simple_repeat Simple_repeat 1 22 0 212 328 0 0 chr9 9077513 9077574 -133193870 - L3b LINE CR1 -243 1340 1280 1187 321 80 5 chr9 9077865 9078451 -133192993 - L1ME3A LINE L1 -258 5981 5352 1710 263 94 22 chr9 9078477 9079467 -133191977 - L1ME3A LINE L1 -2814 3401 2341 316 298 123 6 chr9 9079505 9079676 -133191768 - L1ME3A LINE L1 -4093 2303 2113 21 0 0 0 chr9 9079855 9079876 -133191568 + AT_rich Low_complexity Low_complexity 1 21 0 364 208 28 176 chr9 9080908 9081124 -133190320 + MLT1K LTR MaLR 399 582 -6 323 335 112 6 chr9 9081137 9081316 -133190128 + L2 LINE L2 3116 3313 0 180 250 264 0 chr9 9081539 9081611 -133189833 + MIR SINE MIR 80 170 -92 241 224 0 59 chr9 9082129 9082214 -133189230 + A-rich Low_complexity Low_complexity 5 84 0 211 216 0 0 chr9 9083125 9083176 -133188268 + T-rich Low_complexity Low_complexity 1 51 0 21 0 0 0 chr9 9084119 9084140 -133187304 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr9 9087011 9087036 -133184408 + AT_rich Low_complexity Low_complexity 1 25 0 301 197 28 0 chr9 9087052 9087123 -133184321 - MER116 DNA Mariner -7 73 1 219 256 0 0 chr9 9088637 9088680 -133182764 + L3 LINE CR1 1524 1566 -11 243 0 0 0 chr9 9088965 9088992 -133182452 + (TG)n Simple_repeat Simple_repeat 2 28 0 * 360 0 0 0 chr9 9088991 9089031 -133182413 + (TA)n Simple_repeat Simple_repeat 1 40 0 12959 125 21 60 chr9 9089309 9091610 -133179834 + Tigger1 DNA MER2_type 3 2214 -204 29542 146 42 7 chr9 9091610 9097824 -133173620 - L1PA7 LINE L1 -3 6466 5 869 133 109 24 chr9 9097827 9097992 -133173452 + Tigger1 DNA MER2_type 2240 2418 0 214 308 165 0 chr9 9098148 9098239 -133173205 - MIR SINE MIR -72 136 31 23146 80 36 11 chr9 9100913 9105088 -133166356 + L1PA7 LINE L1 1852 6132 -22 194 0 0 37 chr9 9106600 9106627 -133164817 + (TCTA)n Simple_repeat Simple_repeat 1 26 0 228 296 11 45 chr9 9106729 9106817 -133164627 + L2 LINE L2 3229 3313 0 185 299 86 34 chr9 9112189 9112306 -133159138 + MIR SINE MIR 34 156 -106 263 213 0 0 chr9 9112671 9112718 -133158726 + L2 LINE L2 3214 3260 -12 189 243 272 10 chr9 9113548 9113651 -133157793 + L2 LINE L2 2364 2493 -821 600 175 171 26 chr9 9113768 9113864 -133157580 - MER63B DNA MER1_type -750 312 231 4306 157 28 6 chr9 9113864 9114578 -133156866 + MER44D DNA MER2_type 2 603 -2 600 175 171 26 chr9 9114578 9114724 -133156720 - MER63B DNA MER1_type -831 231 7 412 252 118 30 chr9 9114834 9114969 -133156475 - L2 LINE L2 -8 3305 3159 1691 187 38 51 chr9 9115060 9115455 -133155989 + MLT1B LTR MaLR 1 390 0 472 317 60 42 chr9 9115725 9116110 -133155334 - HAL1b LINE L1 -659 689 298 34 24 0 0 chr9 9116514 9116555 -133154889 + AT_rich Low_complexity Low_complexity 1 41 0 22 0 0 0 chr9 9117409 9117431 -133154013 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chr9 9118238 9118273 -133153171 + AT_rich Low_complexity Low_complexity 1 35 0 727 275 67 22 chr9 9118366 9118635 -133152809 + L1MC4a LINE L1 5563 5843 -1965 270 0 0 0 chr9 9119218 9119248 -133152196 + (A)n Simple_repeat Simple_repeat 1 30 0 232 277 0 15 chr9 9119986 9120051 -133151393 + MER91 DNA MER1_type 1 64 -76 2342 99 0 0 chr9 9120308 9120610 -133150834 + AluSc SINE Alu 3 304 -5 255 31 0 0 chr9 9120893 9120925 -133150519 + (TGAA)n Simple_repeat Simple_repeat 4 35 0 1899 134 0 14 chr9 9120925 9121209 -133150235 - AluSx SINE Alu -32 280 1 894 137 0 0 chr9 9121293 9121439 -133150005 + (TA)n Simple_repeat Simple_repeat 2 147 0 829 80 0 0 chr9 9121440 9121540 -133149904 - AluSc SINE Alu -17 292 193 28 86 0 0 chr9 9121541 9121611 -133149833 + AT_rich Low_complexity Low_complexity 1 70 0 1688 181 74 23 chr9 9122473 9122826 -133148618 + MSTB LTR MaLR 1 371 -55 216 318 38 23 chr9 9123196 9123328 -133148116 + MER5A DNA MER1_type 31 164 -25 * 578 250 7 0 chr9 9123216 9123356 -133148088 - MER5A DNA MER1_type -40 149 9 249 263 123 35 chr9 9125949 9126063 -133145381 + MIR SINE MIR 57 180 -82 2545 28 0 3 chr9 9126322 9126613 -133144831 + AluY SINE Alu 22 311 0 292 221 42 63 chr9 9126623 9126665 -133144779 - MIR3 SINE MIR -5 203 162 798 156 9 133 chr9 9126665 9126813 -133144631 + MER5A DNA MER1_type 3 119 -70 1740 172 0 30 chr9 9126813 9127109 -133144335 - AluSx SINE Alu -25 287 1 798 156 9 133 chr9 9127109 9127171 -133144273 + MER5A DNA MER1_type 119 187 -2 292 221 42 63 chr9 9127171 9127223 -133144221 - MIR3 SINE MIR -46 162 111 336 184 233 0 chr9 9128294 9128397 -133143047 - MER103 DNA DNA -37 129 3 320 135 54 27 chr9 9129185 9129259 -133142185 + L1MC5 LINE L1 7832 7907 -54 25 0 0 0 chr9 9132608 9132633 -133138811 + AT_rich Low_complexity Low_complexity 1 25 0 468 229 145 39 chr9 9133093 9133488 -133137956 + MLT1H LTR MaLR 4 547 -2 751 268 34 43 chr9 9134261 9134586 -133136858 - MARNA DNA Mariner -9 577 256 789 245 38 5 chr9 9134793 9135005 -133136439 + MER20 DNA MER1_type 1 219 0 687 283 35 10 chr9 9135286 9135484 -133135960 - MIR SINE MIR -10 252 50 337 338 27 34 chr9 9135666 9135814 -133135630 + MIR SINE MIR 50 196 -66 291 114 0 0 chr9 9137670 9137714 -133133730 + (CA)n Simple_repeat Simple_repeat 1 44 0 229 146 0 49 chr9 9137887 9137928 -133133516 + MIR SINE MIR 80 118 -144 342 311 37 31 chr9 9138309 9138470 -133132974 + MIR SINE MIR 63 224 -38 673 282 64 37 chr9 9139809 9140062 -133131382 - MIR SINE MIR -2 260 4 396 0 0 0 chr9 9141083 9141127 -133130317 + (TG)n Simple_repeat Simple_repeat 2 45 0 414 57 0 0 chr9 9141275 9141328 -133130116 + (TATG)n Simple_repeat Simple_repeat 4 56 0 * 677 54 21 0 chr9 9141327 9141420 -133130024 + (TCTA)n Simple_repeat Simple_repeat 2 96 0 363 23 0 0 chr9 9141598 9141642 -133129802 + (TG)n Simple_repeat Simple_repeat 2 45 0 21 0 0 0 chr9 9141935 9141956 -133129488 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr9 9142726 9142761 -133128683 + AT_rich Low_complexity Low_complexity 1 35 0 341 310 70 16 chr9 9147412 9147541 -133123903 + MIR SINE MIR 127 262 0 236 298 43 21 chr9 9147643 9147737 -133123707 - L2 LINE L2 -9 3263 3168 26 30 0 0 chr9 9148149 9148182 -133123262 + AT_rich Low_complexity Low_complexity 1 33 0 2155 117 7 0 chr9 9152013 9152312 -133119132 - AluSp SINE Alu -12 301 1 1458 188 49 10 chr9 9152729 9153017 -133118427 + AluJo SINE Alu 1 299 -13 420 272 136 19 chr9 9153579 9153741 -133117703 - MIR SINE MIR -59 203 23 562 291 11 11 chr9 9155107 9155286 -133116158 + MIR SINE MIR 2 180 -82 189 74 0 0 chr9 9156470 9156497 -133114947 + (T)n Simple_repeat Simple_repeat 1 27 0 441 254 113 7 chr9 9157357 9157499 -133113945 - MIR SINE MIR -60 202 46 484 281 135 23 chr9 9157579 9157839 -133113605 + L2 LINE L2 2606 2894 -420 473 296 196 39 chr9 9158188 9158597 -133112847 + L3 LINE CR1 1090 1562 -15 828 159 16 0 chr9 9159596 9159722 -133111722 + AluJb SINE Alu 7 134 -178 1467 202 10 17 chr9 9159735 9160027 -133111417 + AluJo SINE Alu 6 295 -17 186 294 88 15 chr9 9161203 9161271 -133110173 - MIR3 SINE MIR -18 190 118 320 378 7 13 chr9 9161981 9162132 -133109312 + MIR3 SINE MIR 41 190 -18 203 220 55 88 chr9 9163612 9163703 -133107741 + MIR SINE MIR 119 206 -56 715 233 61 0 chr9 9165656 9165819 -133105625 - MIR SINE MIR 0 262 90 1402 179 23 101 chr9 9166000 9166396 -133105048 + MLT1A1 LTR MaLR 1 365 0 271 336 38 15 chr9 9167320 9167451 -133103993 + MIR SINE MIR 41 174 -88 385 257 88 61 chr9 9168142 9168291 -133103153 + MIR3 SINE MIR 9 161 -68 218 246 228 0 chr9 9168398 9168455 -133102989 - MIR SINE MIR -69 139 70 989 172 0 0 chr9 9168650 9168807 -133102637 - AluJb SINE Alu -11 301 145 26 0 0 0 chr9 9170327 9170353 -133101091 + AT_rich Low_complexity Low_complexity 1 26 0 2214 99 0 20 chr9 9171613 9171916 -133099528 - AluSx SINE Alu -15 297 1 242 242 8 42 chr9 9172790 9172910 -133098534 + T-rich Low_complexity Low_complexity 2 117 0 230 337 191 13 chr9 9173738 9174041 -133097403 + L2 LINE L2 2429 2785 -529 322 261 109 25 chr9 9174723 9174842 -133096602 - MIR SINE MIR -30 232 104 191 192 58 39 chr9 9174837 9174889 -133096555 - L2 LINE L2 -4 3309 3257 * 209 338 39 0 chr9 9174897 9174974 -133096470 - MIR SINE MIR -155 107 28 737 325 49 0 chr9 9176604 9176847 -133094597 - MIR SINE MIR -5 257 3 24 53 0 0 chr9 9178749 9178787 -133092657 + AT_rich Low_complexity Low_complexity 1 38 0 2050 137 13 0 chr9 9178788 9179087 -133092357 - AluSx SINE Alu -5 307 5 622 177 0 54 chr9 9179609 9179739 -133091705 + FLAM_A SINE Alu 2 124 -9 25 0 0 0 chr9 9181680 9181705 -133089739 + AT_rich Low_complexity Low_complexity 1 25 0 285 291 34 34 chr9 9181846 9181963 -133089481 + Tigger8 DNA MER2_type 127 243 -423 490 219 10 0 chr9 9182135 9182231 -133089213 - MER94 DNA DNA -35 99 3 237 65 0 0 chr9 9182357 9182388 -133089056 + (GGGA)n Simple_repeat Simple_repeat 2 32 0 506 29 0 14 chr9 9182492 9182561 -133088883 + (GA)n Simple_repeat Simple_repeat 1 68 0 22 0 0 0 chr9 9183048 9183070 -133088374 + AT_rich Low_complexity Low_complexity 1 22 0 266 262 85 37 chr9 9183869 9184033 -133087411 + L1ME4a LINE L1 5933 6104 -17 558 286 5 46 chr9 9184375 9184571 -133086873 - MIR SINE MIR -70 192 5 1113 186 12 39 chr9 9186576 9186834 -133084610 + AluJo SINE Alu 60 310 -2 21 0 0 0 chr9 9187129 9187150 -133084294 + AT_rich Low_complexity Low_complexity 1 21 0 340 308 68 8 chr9 9187757 9187874 -133083570 + L2 LINE L2 3147 3270 -2 35 0 0 0 chr9 9187953 9187988 -133083456 + AT_rich Low_complexity Low_complexity 1 35 0 26 30 0 0 chr9 9188491 9188524 -133082920 + AT_rich Low_complexity Low_complexity 1 33 0 16824 68 1 5 chr9 9188809 9191047 -133080397 + L1P LINE L1 2780 5009 -1137 261 98 0 0 chr9 9191168 9191209 -133080235 + (C)n Simple_repeat Simple_repeat 1 41 0 478 273 58 0 chr9 9191246 9191385 -133080059 + MIR SINE MIR 111 257 -5 1862 107 4 0 chr9 9192649 9192902 -133078542 + AluSx SINE Alu 1 254 -58 962 306 90 35 chr9 9192938 9193483 -133077961 + L1M4 LINE L1 192 766 -5776 6854 118 8 98 chr9 9193584 9194918 -133076526 + Tigger1 DNA MER2_type 995 2208 -210 4459 84 0 0 chr9 9194918 9195510 -133075934 - L1PA7 LINE L1 -1 6153 5562 2634 50 0 0 chr9 9195510 9195833 -133075611 + L1PA5 LINE L1 5830 6152 -2 489 255 213 0 chr9 9196662 9196803 -133074641 - MER5A DNA MER1_type -2 187 17 214 333 11 21 chr9 9197091 9197184 -133074260 + L2 LINE L2 2604 2695 -619 284 293 83 38 chr9 9197357 9197514 -133073930 + L2 LINE L2 2896 3059 -213 221 348 87 26 chr9 9197627 9197742 -133073702 + L2 LINE L2 3134 3255 -17 413 210 15 29 chr9 9198054 9198259 -133073185 + GA-rich Low_complexity Low_complexity 1 202 0 320 202 8 42 chr9 9198267 9198386 -133073058 + A-rich Low_complexity Low_complexity 2 116 0 314 269 134 29 chr9 9198492 9198663 -133072781 + L1ME LINE L1 5607 5795 -326 430 205 90 32 chr9 9199163 9199188 -133072256 - MER83B-int LTR ERV1 -3789 4331 4309 1725 183 10 0 chr9 9199188 9199489 -133071955 - AluJo SINE Alu -8 304 1 430 205 90 32 chr9 9199489 9199619 -133071825 - MER83B-int LTR ERV1 -3811 4309 4167 391 253 58 35 chr9 9199633 9199992 -133071452 - MER83B-int LTR ERV1 -1938 2942 1952 3587 79 8 2 chr9 9199992 9200500 -133070944 - LTR6B LTR ERV1 0 558 48 6185 137 1 1 chr9 9200500 9201435 -133070009 - HERVS71 LTR ERV1 -48 8930 7996 645 325 4 17 chr9 9202551 9202782 -133068662 - MIR SINE MIR -34 228 1 822 210 23 109 chr9 9203127 9203362 -133068082 - MIR SINE MIR -10 252 39 1098 153 9 37 chr9 9203362 9203577 -133067867 - MER3 DNA MER1_type 0 209 1 822 210 23 109 chr9 9203577 9203598 -133067846 - MIR SINE MIR -223 39 18 3480 68 0 1 chr9 9203848 9205031 -133066413 - L1P LINE L1 -4015 2131 858 * 5452 35 17 0 chr9 9205029 9205965 -133065479 + L1PA4 LINE L1 5017 5968 -187 1865 148 0 24 chr9 9207577 9207874 -133063570 + AluJb SINE Alu 3 292 -20 648 172 0 67 chr9 9207983 9208117 -133063327 + FLAM_A SINE Alu 1 125 -8 317 295 18 27 chr9 9208247 9208359 -133063085 - L1MEd LINE L1 -5310 809 699 922 193 0 0 chr9 9208361 9208506 -133062938 - AluJb SINE Alu -28 284 140 2003 119 7 23 chr9 9209001 9209303 -133062141 - AluSx SINE Alu -15 297 1 2459 93 0 3 chr9 9210254 9210567 -133060877 - AluSx SINE Alu 0 312 1 720 169 124 28 chr9 9210892 9211070 -133060374 - MER31B LTR ERV1 0 466 272 255 277 50 40 chr9 9211180 9211281 -133060163 + MER5B DNA MER1_type 19 120 -58 1390 178 90 59 chr9 9211392 9211808 -133059636 - MER21B LTR ERV1 -186 745 317 1486 207 133 85 chr9 9211814 9212326 -133059118 + MER50 LTR ERV1 10 565 -169 2284 110 0 0 chr9 9212326 9212625 -133058819 - AluSg SINE Alu -11 299 1 1486 207 133 85 chr9 9212625 9212804 -133058640 + MER50 LTR ERV1 565 734 0 1112 151 45 113 chr9 9212805 9213151 -133058293 - MER39 LTR ERV1 -237 470 62 278 171 0 122 chr9 9213263 9213345 -133058099 - MER21A LTR ERV1 -859 72 1 544 266 66 8 chr9 9213353 9213593 -133057851 - L1M4 LINE L1 -1857 4289 4045 321 197 0 0 chr9 9213698 9213764 -133057680 - LTR54B LTR ERV1 -419 79 14 6681 169 32 14 chr9 9213764 9215073 -133056371 - MER57-int LTR ERV1 -381 7156 5825 5787 152 58 31 chr9 9215398 9216035 -133055409 - MER57-int LTR ERV1 -1717 5820 5202 1452 182 87 0 chr9 9216035 9216153 -133055291 + AluSx SINE Alu 1 107 -205 419 0 20 0 chr9 9216153 9216204 -133055240 + (TAA)n Simple_repeat Simple_repeat 2 53 0 1452 182 87 0 chr9 9216204 9216360 -133055084 + AluSx SINE Alu 107 299 -13 5787 152 58 31 chr9 9216360 9216964 -133054480 - MER57-int LTR ERV1 -2335 5202 4545 2249 94 0 20 chr9 9218450 9218748 -133052696 + AluSg SINE Alu 1 292 -18 1790 175 24 7 chr9 9219643 9219935 -133051509 - AluSx SINE Alu -15 297 1 520 248 149 30 chr9 9219963 9220326 -133051118 - L1ME4a LINE L1 -2 6119 5714 1076 181 8 46 chr9 9220327 9220416 -133051028 + MLT2B1 LTR ERVL 1 92 -428 4499 87 51 6 chr9 9220416 9221048 -133050396 - PABL_A LTR ERV1 0 660 1 1076 181 8 46 chr9 9221048 9221196 -133050248 + MLT2B1 LTR ERVL 92 229 -291 23 78 0 0 chr9 9221838 9221889 -133049555 + AT_rich Low_complexity Low_complexity 1 51 0 261 0 0 0 chr9 9221889 9221918 -133049526 + (TA)n Simple_repeat Simple_repeat 2 30 0 2171 120 0 3 chr9 9221918 9222217 -133049227 - AluSx SINE Alu -13 299 2 763 61 0 0 chr9 9222488 9222586 -133048858 + L1P LINE L1 1 98 -6048 * 5321 119 0 2 chr9 9222584 9223418 -133048026 + L1P LINE L1 623 1454 -4692 12768 51 5 0 chr9 9223531 9225819 -133045625 - L1PA5 LINE L1 -140 6014 3716 7552 28 16 0 chr9 9227740 9228747 -133042697 - L1PA3 LINE L1 0 6155 5144 3601 209 125 64 chr9 9228955 9229511 -133041933 + L1MC4 LINE L1 6450 6971 -1071 1851 241 124 8 chr9 9229511 9230041 -133041403 + MLT1G1 LTR MaLR 4 595 0 3601 209 125 64 chr9 9230041 9230850 -133040594 + L1MC4 LINE L1 6971 7898 -144 983 135 6 0 chr9 9230962 9231125 -133040319 - L1MA4 LINE L1 -362 5938 5775 257 214 60 0 chr9 9231126 9231210 -133040234 + (TA)n Simple_repeat Simple_repeat 2 90 0 437 289 121 0 chr9 9231210 9231400 -133040044 + LTR33 LTR ERVL 309 521 0 352 384 23 6 chr9 9231648 9231820 -133039624 + MIR3 SINE MIR 19 193 -15 23 0 0 0 chr9 9232285 9232308 -133039136 + AT_rich Low_complexity Low_complexity 1 23 0 2666 86 6 0 chr9 9232611 9232962 -133038482 + THE1A LTR MaLR 3 355 0 2857 96 7 0 chr9 9232963 9233380 -133038064 + THE1A-int LTR MaLR 2 421 -1159 2326 116 30 58 chr9 9233484 9233701 -133037743 - L1MA5A LINE L1 -175 6122 5900 1749 132 90 39 chr9 9233701 9234056 -133037388 - THE1C LTR MaLR -2 373 1 2326 116 30 58 chr9 9234056 9234143 -133037301 - L1MA5A LINE L1 -397 5900 5812 2038 158 0 0 chr9 9234143 9234446 -133036998 - AluJb SINE Alu -9 303 1 2326 116 30 58 chr9 9234446 9234604 -133036840 - L1MA5A LINE L1 -485 5812 5672 1260 220 86 40 chr9 9234611 9235016 -133036428 - L1ME2 LINE L1 -9 6155 5732 713 199 0 14 chr9 9235675 9235816 -133035628 + FLAM_C SINE Alu 3 141 -2 198 167 0 0 chr9 9235927 9235963 -133035481 + (TA)n Simple_repeat Simple_repeat 2 37 0 707 257 45 4 chr9 9235997 9236242 -133035202 - L1ME3A LINE L1 -220 5950 5696 23 33 0 0 chr9 9236754 9236784 -133034660 + AT_rich Low_complexity Low_complexity 1 30 0 216 0 0 0 chr9 9236821 9236845 -133034599 + (TA)n Simple_repeat Simple_repeat 1 24 0 21 57 0 0 chr9 9236913 9236948 -133034496 + AT_rich Low_complexity Low_complexity 1 35 0 1630 202 40 3 chr9 9237365 9237717 -133033727 - MLT1A1 LTR MaLR 0 365 1 306 208 0 14 chr9 9237925 9237997 -133033447 + HAL1b LINE L1 1197 1267 -81 469 33 0 0 chr9 9238540 9238601 -133032843 + L1PA4 LINE L1 6092 6152 -3 1756 170 3 50 chr9 9238601 9238983 -133032461 - MSTA LTR MaLR -64 364 1 8260 195 29 5 chr9 9238983 9240595 -133030849 - MSTA-int LTR MaLR 0 1651 2 702 151 122 14 chr9 9240596 9240735 -133030709 - MSTA LTR MaLR 0 428 275 315 93 0 0 chr9 9240735 9240778 -133030666 - THE1A LTR MaLR 0 355 313 644 179 0 0 chr9 9240778 9240901 -133030543 - THE1B LTR MaLR 0 364 242 24 0 0 0 chr9 9241192 9241216 -133030228 + AT_rich Low_complexity Low_complexity 1 24 0 23 54 0 0 chr9 9241349 9241386 -133030058 + AT_rich Low_complexity Low_complexity 1 37 0 206 146 24 24 chr9 9242794 9242835 -133028609 + CT-rich Low_complexity Low_complexity 2 42 0 588 98 12 0 chr9 9242963 9243045 -133028399 + AluY SINE Alu 1 83 -227 224 307 40 0 chr9 9243634 9243709 -133027735 + MIR SINE MIR 171 248 -14 291 28 0 0 chr9 9243901 9243937 -133027507 + (TG)n Simple_repeat Simple_repeat 2 37 0 2393 93 0 3 chr9 9244324 9244635 -133026809 - AluSg SINE Alu 0 310 1 1813 144 0 0 chr9 9244652 9244902 -133026542 - AluSq SINE Alu -63 250 1 308 270 87 0 chr9 9244903 9245018 -133026426 + L1ME2 LINE L1 6040 6164 0 332 174 122 26 chr9 9245038 9245153 -133026291 + L1MC5 LINE L1 7786 7911 -50 287 278 69 14 chr9 9246088 9246232 -133025212 + BaEV-int LTR ERV1 216 367 -6282 499 325 5 10 chr9 9246577 9246780 -133024664 + BaEV-int LTR ERV1 802 1003 -6782 732 320 39 34 chr9 9246947 9247634 -133023810 + BaEV-int LTR ERV1 1048 1738 -4911 1836 118 16 6 chr9 9247821 9248143 -133023301 - L1M3f LINE L1 -4221 1107 783 4941 120 5 0 chr9 9248143 9248893 -133022551 - THE1A-int LTR MaLR -826 754 1 2457 130 0 6 chr9 9248893 9249248 -133022196 - THE1A LTR MaLR 0 355 3 3923 111 48 0 chr9 9249252 9249810 -133021634 + BaEV-int LTR ERV1 4152 4736 -2355 610 104 0 0 chr9 9249810 9249888 -133021556 + Alu SINE Alu 2 78 -232 180 0 0 0 chr9 9250927 9250947 -133020497 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1537 236 51 6 chr9 9251002 9251333 -133020111 + MLT1A1 LTR MaLR 14 359 -6 203 0 37 0 chr9 9251575 9251602 -133019842 + (TCTA)n Simple_repeat Simple_repeat 3 30 0 30 111 0 0 chr9 9251830 9251965 -133019479 + AT_rich Low_complexity Low_complexity 1 135 0 2472 172 17 44 chr9 9252507 9253242 -133018202 - MER52A-int LTR ERV1 -1331 1966 953 * 6312 180 35 41 chr9 9253236 9253449 -133017995 - MER52A-int LTR ERV1 -1882 1261 1048 2446 159 3 0 chr9 9253449 9253821 -133017623 - THE1C LTR MaLR -2 373 1 6312 180 35 41 chr9 9253821 9254914 -133016530 - MER52A-int LTR ERV1 -2095 1048 30 480 271 6 54 chr9 9254919 9255085 -133016359 - MER52A LTR ERV1 0 1755 1598 561 306 22 71 chr9 9255090 9255358 -133016086 - MER52A LTR ERV1 -285 1470 1216 1916 170 69 20 chr9 9255594 9255941 -133015503 + THE1B LTR MaLR 1 364 0 11764 115 10 2 chr9 9255942 9257508 -133013936 + THE1B-int LTR MaLR 2 1579 -1 1065 167 59 25 chr9 9257509 9257713 -133013731 + THE1B LTR MaLR 1 211 -153 1092 105 6 19 chr9 9257813 9257975 -133013469 - LTR14B LTR ERVK -432 176 17 662 336 8 4 chr9 9257975 9258237 -133013207 + Harlequin LTR ERV1 5494 5756 -2029 333 269 25 25 chr9 9258468 9258587 -133012857 + Harlequin LTR ERV1 4735 4853 -1796 466 284 78 35 chr9 9258986 9259218 -133012226 + Harlequin LTR ERV1 5297 5538 -1111 332 193 50 67 chr9 9259445 9259564 -133011880 + Harlequin LTR ERV1 3819 3935 -2961 2007 78 11 14 chr9 9259615 9259898 -133011546 - AluY SINE Alu -1 310 29 20863 33 7 0 chr9 9260204 9262705 -133008739 + L1P LINE L1 2545 5062 -1084 14860 89 6 5 chr9 9262805 9264869 -133006575 + L1P LINE L1 3038 5104 -1042 737 325 49 0 chr9 9315384 9315627 -132955817 - MIR SINE MIR -5 257 3 24 53 0 0 chr9 9317529 9317567 -132953877 + AT_rich Low_complexity Low_complexity 1 38 0 2050 137 13 0 chr9 9317568 9317867 -132953577 - AluSx SINE Alu -5 307 5 622 177 0 54 chr9 9318389 9318519 -132952925 + FLAM_A SINE Alu 2 124 -9 25 0 0 0 chr9 9320460 9320485 -132950959 + AT_rich Low_complexity Low_complexity 1 25 0 285 291 34 34 chr9 9320626 9320743 -132950701 + Tigger8 DNA MER2_type 127 243 -423 490 219 10 0 chr9 9320915 9321011 -132950433 - MER94 DNA DNA -35 99 3 636 143 0 0 chr9 9321138 9321250 -132950194 + (GA)n Simple_repeat Simple_repeat 1 112 0 22 0 0 0 chr9 9321736 9321758 -132949686 + AT_rich Low_complexity Low_complexity 1 22 0 266 262 85 37 chr9 9322557 9322721 -132948723 + L1ME4a LINE L1 5933 6104 -17 558 286 5 46 chr9 9323063 9323259 -132948185 - MIR SINE MIR -70 192 5 1144 189 8 39 chr9 9325264 9325523 -132945921 + AluJo SINE Alu 60 310 -2 21 0 0 0 chr9 9325818 9325839 -132945605 + AT_rich Low_complexity Low_complexity 1 21 0 340 308 68 8 chr9 9326446 9326563 -132944881 + L2 LINE L2 3147 3270 -2 35 0 0 0 chr9 9326642 9326677 -132944767 + AT_rich Low_complexity Low_complexity 1 35 0 26 30 0 0 chr9 9327071 9327104 -132944340 + AT_rich Low_complexity Low_complexity 1 33 0 409 199 7 28 chr9 9327529 9327670 -132943774 + CT-rich Low_complexity Low_complexity 1 138 0 1901 159 7 3 chr9 9328135 9328443 -132943001 + AluJb SINE Alu 3 311 -1 21 0 0 0 chr9 9330289 9330310 -132941134 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 9330413 9330434 -132941010 + AT_rich Low_complexity Low_complexity 1 21 0 914 227 71 21 chr9 9330575 9330813 -132940631 + MIR SINE MIR 11 260 -2 245 256 24 39 chr9 9330927 9331029 -132940415 + GA-rich Low_complexity Low_complexity 3 170 0 207 357 14 13 chr9 9332036 9332115 -132939329 - MIR3 SINE MIR -54 154 75 414 327 73 29 chr9 9332433 9332638 -132938806 - MIR SINE MIR -39 223 10 183 146 0 0 chr9 9333922 9333963 -132937481 + (TTA)n Simple_repeat Simple_repeat 2 42 0 737 224 6 17 chr9 9334022 9334196 -132937248 + MER104 DNA Tc2 6 177 -3 451 333 138 4 chr9 9334199 9334430 -132937014 - MIR SINE MIR 0 262 1 204 40 0 0 chr9 9334941 9334966 -132936478 + (TG)n Simple_repeat Simple_repeat 2 26 0 360 289 47 31 chr9 9335542 9335678 -132935766 + MIR3 SINE MIR 49 187 -21 1906 148 0 22 chr9 9336527 9336844 -132934600 - AluJb SINE Alu -2 310 1 500 219 0 0 chr9 9336893 9336989 -132934455 - MER5A DNA MER1_type -80 109 14 425 309 8 8 chr9 9337931 9338057 -132933387 + MER5A DNA MER1_type 7 132 -57 1841 92 0 0 chr9 9338060 9338311 -132933133 - L1P LINE L1 -2459 3687 3437 279 286 52 104 chr9 9338512 9338743 -132932701 - L3b LINE CR1 -74 1509 1291 5632 165 87 3 chr9 9339355 9340243 -132931201 + Tigger3b DNA MER2_type 2 813 -2215 294 29 0 0 chr9 9340243 9340278 -132931166 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1968 107 7 4 chr9 9340278 9340548 -132930896 - AluSq SINE Alu -42 271 1 5632 165 87 3 chr9 9340548 9340791 -132930653 + Tigger3b DNA MER2_type 812 1230 -1 333 118 0 0 chr9 9341968 9342019 -132929425 + (CA)n Simple_repeat Simple_repeat 2 52 0 1085 159 85 0 chr9 9342368 9342569 -132928875 + L1MA7 LINE L1 5893 6110 -181 27 0 0 0 chr9 9342591 9342618 -132928826 + AT_rich Low_complexity Low_complexity 1 27 0 316 344 94 25 chr9 9345443 9345603 -132925841 + MIR3 SINE MIR 8 178 -30 279 0 0 0 chr9 9346203 9346234 -132925210 + (T)n Simple_repeat Simple_repeat 1 31 0 340 250 26 0 chr9 9346235 9346311 -132925133 + MER5B DNA MER1_type 65 142 -36 2239 99 3 0 chr9 9346587 9346880 -132924564 - AluSg SINE Alu -16 294 1 380 299 24 31 chr9 9347090 9347217 -132924227 - MIR3 SINE MIR -6 202 77 225 191 0 0 chr9 9347324 9347366 -132924078 - Charlie8 DNA MER1_type -28 2389 2348 377 301 78 44 chr9 9347377 9347817 -132923627 - Charlie8 DNA MER1_type -2196 221 1 272 324 70 28 chr9 9348003 9348145 -132923299 - MIR3 SINE MIR -49 159 12 1094 213 13 30 chr9 9349186 9349416 -132922028 + AluJb SINE Alu 61 286 -26 392 324 42 19 chr9 9350317 9350530 -132920914 + L1MC/D LINE L1 5586 5803 -2005 29 60 0 0 chr9 9350771 9350821 -132920623 + AT_rich Low_complexity Low_complexity 1 50 0 1645 182 0 10 chr9 9354310 9354601 -132916843 + AluJb SINE Alu 1 288 -24 204 125 0 0 chr9 9355513 9355545 -132915899 + (TCCC)n Simple_repeat Simple_repeat 3 34 0 294 252 146 24 chr9 9359275 9359398 -132912046 + MIR3 SINE MIR 57 194 -14 2276 68 0 4 chr9 9359452 9359731 -132911713 - AluY SINE Alu -33 278 1 896 200 5 36 chr9 9359943 9360138 -132911306 - MER5A DNA MER1_type 0 189 1 243 220 17 0 chr9 9360205 9360264 -132911180 + (TA)n Simple_repeat Simple_repeat 2 61 0 185 0 40 0 chr9 9360487 9360512 -132910932 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 333 0 0 0 chr9 9361079 9361116 -132910328 + (TG)n Simple_repeat Simple_repeat 1 37 0 315 281 156 0 chr9 9362386 9362482 -132908962 - L2 LINE L2 -18 3295 3185 29 28 0 0 chr9 9363197 9363233 -132908211 + AT_rich Low_complexity Low_complexity 1 36 0 426 263 51 36 chr9 9363409 9363546 -132907898 - MIR3 SINE MIR -45 163 25 22 0 0 0 chr9 9365785 9365807 -132905637 + AT_rich Low_complexity Low_complexity 1 22 0 219 275 110 28 chr9 9367172 9367281 -132904163 - L2 LINE L2 -15 3298 3181 854 150 0 0 chr9 9368090 9368217 -132903227 - FLAM_C SINE Alu -16 127 1 247 375 27 18 chr9 9369139 9369251 -132902193 + L2 LINE L2 3154 3266 -6 234 0 0 0 chr9 9369576 9369602 -132901842 + (A)n Simple_repeat Simple_repeat 1 26 0 26 0 0 0 chr9 9372945 9372971 -132898473 + AT_rich Low_complexity Low_complexity 1 26 0 22 35 0 0 chr9 9373366 9373395 -132898049 + AT_rich Low_complexity Low_complexity 1 29 0 722 185 15 29 chr9 9373646 9373809 -132897635 - MIR SINE MIR 0 262 103 1311 204 39 0 chr9 9378778 9379086 -132892358 + MER33 DNA MER1_type 5 324 0 565 308 31 62 chr9 9380269 9380717 -132890727 + L2 LINE L2 340 773 -2541 1290 346 103 36 chr9 9380717 9382315 -132889129 + L2 LINE L2 1118 2823 -491 1997 158 3 32 chr9 9382375 9382722 -132888722 - MER1B DNA MER1_type 0 337 1 21 0 0 0 chr9 9382932 9382953 -132888491 + AT_rich Low_complexity Low_complexity 1 21 0 462 257 182 30 chr9 9384113 9384315 -132887129 + MIR SINE MIR 3 228 -34 479 248 35 0 chr9 9384344 9384457 -132886987 + MIR SINE MIR 75 191 -71 275 319 21 11 chr9 9386155 9386249 -132885195 + L2 LINE L2 2976 3070 -202 265 302 35 99 chr9 9386477 9386679 -132884765 + L2 LINE L2 2909 3097 -175 582 226 68 0 chr9 9386835 9386968 -132884476 + L1MA10 LINE L1 6192 6333 -1 2265 91 3 3 chr9 9387126 9387434 -132884010 + AluY SINE Alu 1 308 -3 2122 117 0 0 chr9 9388045 9388348 -132883096 - AluSg SINE Alu 0 303 1 2100 98 0 80 chr9 9389738 9390098 -132881346 + AluY SINE Alu 1 333 0 353 286 56 89 chr9 9392982 9393251 -132878193 - MIR SINE MIR -1 261 2 338 263 0 0 chr9 9393349 9393444 -132878000 + MIR SINE MIR 120 214 -48 1326 207 46 25 chr9 9393715 9393803 -132877641 + AluJo SINE Alu 1 86 -226 2064 94 33 0 chr9 9393803 9394108 -132877336 + AluSp SINE Alu 1 314 0 1326 207 46 25 chr9 9394108 9394298 -132877146 + AluJo SINE Alu 86 286 -26 22 56 0 0 chr9 9394910 9394946 -132876498 + AT_rich Low_complexity Low_complexity 1 36 0 180 0 0 0 chr9 9397926 9397946 -132873498 + (A)n Simple_repeat Simple_repeat 1 20 0 705 288 95 21 chr9 9398561 9398888 -132872556 + L2 LINE L2 2943 3293 -20 594 226 119 43 chr9 9399459 9399694 -132871750 + MIR SINE MIR 7 259 -3 498 91 0 0 chr9 9400231 9400308 -132871136 + (CA)n Simple_repeat Simple_repeat 2 78 0 306 344 139 35 chr9 9401186 9401756 -132869688 + L2 LINE L2 2045 2673 -641 643 233 38 88 chr9 9401757 9402019 -132869425 - MER112 DNA MER1_type 0 260 12 507 17 0 0 chr9 9402439 9402499 -132868945 + (CA)n Simple_repeat Simple_repeat 2 61 0 1078 80 98 18 chr9 9403057 9403220 -132868224 - MER30 DNA MER1_type -54 176 1 230 245 0 53 chr9 9403966 9404060 -132867384 + GA-rich Low_complexity Low_complexity 2 90 0 1756 108 0 15 chr9 9404534 9404794 -132866650 - AluSc SINE Alu -4 305 50 183 129 0 0 chr9 9406318 9406349 -132865095 + (A)n Simple_repeat Simple_repeat 1 31 0 315 49 0 0 chr9 9406817 9406858 -132864586 + (A)n Simple_repeat Simple_repeat 1 41 0 211 282 0 0 chr9 9407381 9407452 -132863992 + A-rich Low_complexity Low_complexity 1 71 0 234 217 0 0 chr9 9409099 9409145 -132862299 + L1MC4 LINE L1 6658 6703 -1339 2411 76 0 10 chr9 9411608 9411922 -132859522 + AluY SINE Alu 1 311 0 212 162 0 0 chr9 9412105 9412142 -132859302 + (TATG)n Simple_repeat Simple_repeat 2 38 0 755 289 47 16 chr9 9412735 9412988 -132858456 + MIR SINE MIR 2 262 0 213 356 0 0 chr9 9413985 9414072 -132857372 + MIR SINE MIR 160 246 -16 180 0 0 0 chr9 9414262 9414282 -132857162 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 450 79 0 0 chr9 9415131 9415194 -132856250 + (TG)n Simple_repeat Simple_repeat 2 64 0 1683 172 0 26 chr9 9416274 9416577 -132854867 + AluJo SINE Alu 6 300 -12 562 297 79 40 chr9 9416604 9416907 -132854537 - MER102b DNA MER1_type -8 333 19 242 239 14 0 chr9 9417278 9417349 -132854095 + (TA)n Simple_repeat Simple_repeat 1 72 0 1516 194 7 14 chr9 9417350 9417638 -132853806 - AluJb SINE Alu -26 286 1 21 0 0 0 chr9 9417745 9417766 -132853678 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr9 9417973 9418001 -132853443 + AT_rich Low_complexity Low_complexity 1 28 0 2003 145 49 25 chr9 9421029 9421395 -132850049 + THE1C LTR MaLR 1 375 0 395 258 88 57 chr9 9421409 9421603 -132849841 + MIR SINE MIR 39 238 -24 2132 195 28 11 chr9 9421689 9422146 -132849298 + MLT1C LTR MaLR 1 465 -2 342 239 146 23 chr9 9422150 9422280 -132849164 - MIR SINE MIR -83 179 34 1900 130 29 29 chr9 9423066 9423373 -132848071 - AluSx SINE Alu -5 307 1 435 286 29 0 chr9 9424919 9425125 -132846319 + MIR SINE MIR 49 229 -33 264 361 0 53 chr9 9425820 9425953 -132845491 + L2 LINE L2 3188 3313 0 244 369 0 0 chr9 9426674 9426758 -132844686 + L2 LINE L2 3188 3271 -42 28 48 0 0 chr9 9429089 9429131 -132842313 + AT_rich Low_complexity Low_complexity 1 42 0 219 235 20 0 chr9 9430843 9430894 -132840550 + GA-rich Low_complexity Low_complexity 4 55 0 336 200 0 0 chr9 9432518 9432588 -132838856 + A-rich Low_complexity Low_complexity 1 70 0 184 128 21 21 chr9 9432681 9432728 -132838716 + GA-rich Low_complexity Low_complexity 2 48 0 195 100 0 0 chr9 9433291 9433321 -132838123 + (TA)n Simple_repeat Simple_repeat 1 30 0 26 0 0 0 chr9 9433534 9433560 -132837884 + AT_rich Low_complexity Low_complexity 1 26 0 250 200 17 0 chr9 9434761 9434821 -132836623 + A-rich Low_complexity Low_complexity 1 61 0 824 65 0 0 chr9 9436063 9436170 -132835274 - L1PA5 LINE L1 -5 6149 6043 340 219 27 0 chr9 9441207 9441280 -132830164 - L2 LINE L2 -2 3311 3237 214 256 105 12 chr9 9441337 9441423 -132830021 + MIR SINE MIR 141 234 -28 362 198 23 0 chr9 9442660 9442746 -132828698 - L1MC4 LINE L1 -1339 6703 6616 32 57 0 0 chr9 9444529 9444582 -132826862 + AT_rich Low_complexity Low_complexity 1 53 0 1318 219 70 147 chr9 9444801 9446360 -132825084 + L1MC4 LINE L1 6539 7896 -146 1365 228 7 7 chr9 9447496 9447794 -132823650 - AluJb SINE Alu -11 301 4 592 210 14 22 chr9 9447796 9447934 -132823510 - FLAM_C SINE Alu -6 137 1 202 195 0 0 chr9 9447936 9447977 -132823467 + (TG)n Simple_repeat Simple_repeat 2 42 0 2102 135 3 0 chr9 9449974 9450277 -132821167 - AluSg SINE Alu -6 304 1 870 122 8 0 chr9 9450432 9450563 -132820881 - AluSx SINE Alu -9 303 172 530 107 12 12 chr9 9450563 9450647 -132820797 - AluSx SINE Alu -227 86 3 2011 136 3 3 chr9 9450735 9451036 -132820408 - AluSx SINE Alu -9 303 3 274 163 20 0 chr9 9451036 9451085 -132820359 + MADE1 DNA Mariner 30 79 -1 198 0 0 0 chr9 9451157 9451179 -132820265 + (T)n Simple_repeat Simple_repeat 1 22 0 2115 125 0 6 chr9 9452755 9453068 -132818376 - AluSx SINE Alu -1 311 1 203 167 0 0 chr9 9453590 9453626 -132817818 + GA-rich Low_complexity Low_complexity 2 37 0 1677 194 7 0 chr9 9453635 9453929 -132817515 + AluJb SINE Alu 6 301 -11 1902 152 3 3 chr9 9454638 9454935 -132816509 - AluSx SINE Alu -15 297 1 2483 68 13 0 chr9 9454949 9455256 -132816188 - AluSp SINE Alu 0 313 3 227 304 138 29 chr9 9455263 9455401 -132816043 - L2 LINE L2 -567 2747 2595 275 306 28 19 chr9 9456541 9456649 -132814795 + MIR SINE MIR 152 260 -2 242 231 19 0 chr9 9457720 9457772 -132813672 + CT-rich Low_complexity Low_complexity 3 55 0 286 100 0 80 chr9 9459925 9459975 -132811469 + U2 snRNA snRNA 1 46 -142 2183 103 0 4 chr9 9460174 9460479 -132810965 + AluSg SINE Alu 1 304 0 1427 182 50 12 chr9 9461402 9461660 -132809784 + AluJb SINE Alu 1 268 -44 213 268 0 0 chr9 9463562 9463603 -132807841 + L2 LINE L2 3215 3255 -17 213 39 0 0 chr9 9463699 9463725 -132807719 + (TA)n Simple_repeat Simple_repeat 2 27 0 2326 106 0 0 chr9 9463728 9464040 -132807404 + AluSx SINE Alu 1 312 0 342 67 0 0 chr9 9464047 9464092 -132807352 + (CA)n Simple_repeat Simple_repeat 2 46 0 222 235 0 0 chr9 9464092 9464143 -132807301 + (TA)n Simple_repeat Simple_repeat 2 52 0 984 203 83 0 chr9 9465419 9465660 -132805784 + L1MA4 LINE L1 6036 6296 -4 330 87 0 0 chr9 9466704 9466750 -132804694 + (CA)n Simple_repeat Simple_repeat 2 47 0 22 0 0 0 chr9 9466791 9466813 -132804631 + AT_rich Low_complexity Low_complexity 1 22 0 2337 206 28 29 chr9 9467211 9467872 -132803572 + LTR27 LTR ERV1 1 498 -138 22 35 0 0 chr9 9468091 9468120 -132803324 + AT_rich Low_complexity Low_complexity 1 29 0 1922 158 0 0 chr9 9468696 9469004 -132802440 - AluJb SINE Alu 0 308 1 714 219 63 15 chr9 9469060 9469265 -132802179 - L1M4 LINE L1 -1034 5112 4898 644 256 48 6 chr9 9469264 9469489 -132801955 + L1ME2 LINE L1 5756 5993 -177 * 465 186 21 0 chr9 9469538 9469635 -132801809 + L1MA10 LINE L1 6221 6319 -15 209 152 22 0 chr9 9469640 9469668 -132801776 + (CATATA)n Simple_repeat Simple_repeat 3 29 -20 1978 202 14 31 chr9 9469668 9469704 -132801740 + MER47B DNA MER2_type 1 36 -2287 1888 116 4 0 chr9 9469704 9469962 -132801482 - AluSg SINE Alu -11 299 41 1714 155 0 15 chr9 9469962 9470233 -132801211 - AluSx SINE Alu -45 267 1 1978 202 14 31 chr9 9470233 9470620 -132800824 + MER47B DNA MER2_type 34 418 0 209 152 22 0 chr9 9470620 9470637 -132800807 + (CATATA)n Simple_repeat Simple_repeat 29 49 0 1944 117 14 21 chr9 9470684 9470975 -132800469 + AluSx SINE Alu 1 289 -23 369 0 0 0 chr9 9472368 9472409 -132799035 + (TG)n Simple_repeat Simple_repeat 2 42 0 282 319 92 17 chr9 9472866 9472985 -132798459 + L2 LINE L2 3144 3271 -1 250 282 103 136 chr9 9473553 9473883 -132797561 + L2 LINE L2 2954 3272 0 22 35 0 0 chr9 9474379 9474408 -132797036 + AT_rich Low_complexity Low_complexity 1 29 0 212 345 84 21 chr9 9478221 9478363 -132793081 + MIR3 SINE MIR 33 183 -25 23 0 0 0 chr9 9480370 9480393 -132791051 + AT_rich Low_complexity Low_complexity 1 23 0 180 306 69 69 chr9 9481879 9481951 -132789493 - L2 LINE L2 0 3313 3242 241 272 7 110 chr9 9483260 9483299 -132788145 + L2 LINE L2 2938 2979 -293 2170 95 3 3 chr9 9483299 9483629 -132787815 - AluSp SINE Alu 0 330 1 241 272 7 110 chr9 9483629 9483724 -132787720 + L2 LINE L2 2979 3059 -213 933 197 16 16 chr9 9483801 9483989 -132787455 + MER5A DNA MER1_type 1 188 -1 343 346 58 6 chr9 9485546 9485702 -132785742 - L2 LINE L2 -1 3271 3108 463 322 64 35 chr9 9487219 9487533 -132783911 + L1ME LINE L1 2979 3301 -2845 2346 90 3 0 chr9 9487541 9487842 -132783602 + AluY SINE Alu 1 302 -9 270 116 0 0 chr9 9487842 9487885 -132783559 + (GGGGA)n Simple_repeat Simple_repeat 1 43 0 462 188 111 8 chr9 9487887 9488004 -132783440 + FLAM_C SINE Alu 5 133 0 438 273 108 45 chr9 9488267 9488601 -132782843 + L1ME LINE L1 4905 5259 -887 444 285 57 44 chr9 9488627 9489115 -132782329 + L1ME LINE L1 5312 5803 -367 1739 141 4 15 chr9 9489135 9489397 -132782047 - MER1B DNA MER1_type -80 259 1 627 197 0 53 chr9 9489426 9489558 -132781886 - FLAM_A SINE Alu -8 125 1 1851 174 0 7 chr9 9489944 9490232 -132781212 + AluJb SINE Alu 1 286 -26 32 26 0 0 chr9 9490232 9490271 -132781173 + AT_rich Low_complexity Low_complexity 1 39 0 2572 121 3 5 chr9 9490795 9491166 -132780278 - THE1C LTR MaLR 0 375 6 23 33 0 0 chr9 9491357 9491387 -132780057 + AT_rich Low_complexity Low_complexity 1 30 0 257 313 80 0 chr9 9491832 9491944 -132779500 - MIR SINE MIR -21 241 121 28 0 0 26 chr9 9492075 9492094 -132779350 + AT_rich Low_complexity Low_complexity 1 19 -19 1997 133 3 0 chr9 9492094 9492379 -132779065 + AluSg SINE Alu 1 286 -24 28 0 0 26 chr9 9492379 9492398 -132779046 + AT_rich Low_complexity Low_complexity 19 38 0 25 51 0 0 chr9 9492834 9492873 -132778571 + AT_rich Low_complexity Low_complexity 1 39 0 2234 102 0 10 chr9 9492940 9493253 -132778191 + AluY SINE Alu 1 310 -1 24 32 0 0 chr9 9493389 9493420 -132778024 + AT_rich Low_complexity Low_complexity 1 31 0 298 324 29 0 chr9 9494932 9495034 -132776410 + MER5A DNA MER1_type 40 144 -45 1739 194 35 78 chr9 9496877 9497399 -132774045 - MLT1D LTR MaLR -3 502 4 219 375 94 31 chr9 9498895 9499151 -132772293 - L2 LINE L2 -184 3088 2817 206 247 143 137 chr9 9500084 9500266 -132771178 - L3 LINE CR1 -130 1447 1265 1921 127 69 30 chr9 9500563 9500924 -132770520 + THE1C LTR MaLR 1 375 0 2314 96 0 3 chr9 9500935 9501237 -132770207 - AluY SINE Alu -10 301 1 218 289 0 21 chr9 9503557 9503654 -132767790 + A-rich Low_complexity Low_complexity 2 96 0 22 0 0 0 chr9 9503937 9503959 -132767485 + AT_rich Low_complexity Low_complexity 1 22 0 1816 110 8 34 chr9 9504277 9504573 -132766871 + AluSx SINE Alu 34 322 0 2452 137 0 0 chr9 9505032 9505396 -132766048 + THE1B LTR MaLR 1 364 0 2241 82 26 7 chr9 9505688 9505992 -132765452 - AluSp SINE Alu -3 310 1 9674 193 25 6 chr9 9506002 9507768 -132763676 + L1M1 LINE L1 111 1911 -5654 21 0 0 0 chr9 9508602 9508623 -132762821 + AT_rich Low_complexity Low_complexity 1 21 0 259 254 132 35 chr9 9510153 9510267 -132761177 - L2 LINE L2 -6 3307 3183 339 355 74 31 chr9 9510744 9511000 -132760444 - L2 LINE L2 -757 2557 2291 382 307 106 5 chr9 9511609 9511798 -132759646 + MIR SINE MIR 49 256 -6 186 43 0 0 chr9 9512012 9512035 -132759409 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 1361 166 73 7 chr9 9513082 9513384 -132758060 + L1MA8 LINE L1 5964 6285 -6 2098 126 0 7 chr9 9513437 9513739 -132757705 + AluSg SINE Alu 1 300 -10 24 0 0 0 chr9 9515710 9515734 -132755710 + AT_rich Low_complexity Low_complexity 1 24 0 269 321 18 18 chr9 9516040 9516149 -132755295 + MIR SINE MIR 98 206 -56 423 242 87 60 chr9 9516261 9516410 -132755034 + MIR SINE MIR 109 261 -1 264 343 14 21 chr9 9516403 9516546 -132754898 - MIR SINE MIR -107 155 14 * 1825 166 6 13 chr9 9517497 9517811 -132753633 + AluJb SINE Alu 1 312 0 349 221 19 10 chr9 9517811 9517915 -132753529 + GA-rich Low_complexity Low_complexity 5 109 0 260 45 68 0 chr9 9518001 9518045 -132753399 + A-rich Low_complexity Low_complexity 1 47 0 * 270 125 0 0 chr9 9518043 9518091 -132753353 + (GGGGA)n Simple_repeat Simple_repeat 4 51 0 285 51 0 0 chr9 9518177 9518216 -132753228 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 429 304 88 21 chr9 9519647 9519841 -132751603 - L3 LINE CR1 -106 1471 1265 640 255 76 0 chr9 9520264 9520409 -132751035 - MER82 DNA MER2_type -25 628 473 1723 163 0 72 chr9 9524775 9524941 -132746503 - AluSx SINE Alu -16 296 162 303 49 0 0 chr9 9524941 9524982 -132746462 + (TG)n Simple_repeat Simple_repeat 2 42 0 1723 163 0 72 chr9 9524982 9525134 -132746310 - AluSx SINE Alu -150 162 1 1795 176 35 23 chr9 9525139 9525570 -132745874 - L1MA8 LINE L1 0 6291 5856 459 289 28 0 chr9 9527089 9527231 -132744213 - MER69 DNA AcHobo -2380 146 1 28 48 0 0 chr9 9527449 9527491 -132743953 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr9 9528037 9528058 -132743386 + AT_rich Low_complexity Low_complexity 1 21 0 231 296 112 40 chr9 9528628 9528753 -132742691 + L2 LINE L2 3139 3272 0 1380 197 10 48 chr9 9528931 9529240 -132742204 + AluJo SINE Alu 1 297 -15 270 274 147 0 chr9 9529241 9529336 -132742108 - L2 LINE L2 -13 3300 3192 220 224 0 0 chr9 9529635 9529684 -132741760 + (TAA)n Simple_repeat Simple_repeat 1 49 0 439 346 87 9 chr9 9529687 9529918 -132741526 - MIR SINE MIR 0 262 14 327 200 50 0 chr9 9530529 9530589 -132740855 - L2 LINE L2 -16 3256 3194 297 328 94 18 chr9 9530647 9530818 -132740626 - MIR SINE MIR -6 256 73 254 244 204 35 chr9 9531084 9531256 -132740188 - L2 LINE L2 -5 3308 3108 249 175 16 32 chr9 9531257 9531320 -132740124 + (CATATA)n Simple_repeat Simple_repeat 1 62 0 1203 249 97 45 chr9 9532538 9533032 -132738412 + MLT2B1 LTR ERVL 1 520 0 352 289 33 25 chr9 9533403 9533524 -132737920 + MIR3 SINE MIR 79 200 -8 28 0 0 0 chr9 9533575 9533603 -132737841 + AT_rich Low_complexity Low_complexity 1 28 0 202 340 41 31 chr9 9534701 9534798 -132736646 - MIR SINE MIR -78 130 33 354 23 0 0 chr9 9538196 9538239 -132733205 + (TG)n Simple_repeat Simple_repeat 2 44 0 316 300 0 18 chr9 9540990 9541100 -132730344 - L2 LINE L2 -16 3297 3190 213 66 115 0 chr9 9541106 9541167 -132730277 + (TA)n Simple_repeat Simple_repeat 2 69 0 29 60 0 0 chr9 9541487 9541537 -132729907 + AT_rich Low_complexity Low_complexity 1 50 0 432 359 32 14 chr9 9542216 9542436 -132729008 + MLT1K LTR MaLR 23 246 -342 273 298 72 53 chr9 9543718 9543980 -132727464 + L1ME4a LINE L1 5637 5903 -218 23 0 0 0 chr9 9544178 9544201 -132727243 + AT_rich Low_complexity Low_complexity 1 23 0 2155 104 0 0 chr9 9544900 9545215 -132726229 - AluSc SINE Alu 0 315 1 1571 197 7 0 chr9 9546006 9546296 -132725148 - AluJb SINE Alu -13 299 8 671 115 0 26 chr9 9546344 9546457 -132724987 + AluSp/q SINE Alu 204 313 0 234 81 0 0 chr9 9546621 9546658 -132724786 + (A)n Simple_repeat Simple_repeat 1 37 0 25 31 0 0 chr9 9546755 9546787 -132724657 + AT_rich Low_complexity Low_complexity 1 32 0 356 86 0 17 chr9 9549417 9549475 -132721969 + (GGAA)n Simple_repeat Simple_repeat 4 60 0 6125 183 37 71 chr9 9549670 9551075 -132720369 + MER52A LTR ERV1 399 1755 0 237 261 0 15 chr9 9551699 9551764 -132719680 + GA-rich Low_complexity Low_complexity 1 64 0 339 268 84 106 chr9 9552088 9552267 -132719177 + MER5B DNA MER1_type 4 178 0 229 351 77 36 chr9 9552573 9552741 -132718703 + L2 LINE L2 2918 3092 -180 373 248 97 31 chr9 9553606 9553832 -132717612 - L1ME LINE L1 -364 5757 5517 1717 184 7 0 chr9 9555996 9556289 -132715155 - AluJo SINE Alu -16 296 2 2294 81 17 7 chr9 9556325 9556622 -132714822 + AluSp SINE Alu 4 303 -10 764 194 90 0 chr9 9560068 9560223 -132711221 - MER20 DNA MER1_type -19 200 32 359 267 87 52 chr9 9562176 9562348 -132709096 + MER5A DNA MER1_type 8 185 -4 844 274 202 13 chr9 9562541 9562917 -132708527 + MER69 DNA AcHobo 1 447 -2079 424 254 42 0 chr9 9562897 9563015 -132708429 + MER69 DNA AcHobo 1917 2039 -487 * 1729 101 26 38 chr9 9563082 9563239 -132708205 - L1P4 LINE L1 -697 5477 5320 2371 95 0 3 chr9 9563239 9563543 -132707901 - AluSq SINE Alu -10 303 1 1729 101 26 38 chr9 9563543 9563805 -132707639 - L1P4 LINE L1 -854 5320 5058 21 36 0 0 chr9 9564003 9564031 -132707413 + AT_rich Low_complexity Low_complexity 1 28 0 193 200 60 0 chr9 9567073 9567123 -132704321 - MIR SINE MIR -93 169 117 258 156 0 0 chr9 9567990 9568035 -132703409 + (TTCA)n Simple_repeat Simple_repeat 1 45 0 516 270 0 0 chr9 9568035 9568146 -132703298 - FLAM_A SINE Alu -22 120 10 279 0 0 0 chr9 9568378 9568409 -132703035 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2100 127 3 3 chr9 9569558 9569865 -132701579 - AluSx SINE Alu -5 307 1 2257 108 0 0 chr9 9573131 9573436 -132698008 + AluSq SINE Alu 1 305 -8 1354 148 44 109 chr9 9573504 9573829 -132697615 + MER46B DNA MER2_type 3 176 -2555 188 0 74 0 chr9 9573829 9573856 -132697588 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 1354 148 44 109 chr9 9573856 9573914 -132697530 + MER46B DNA MER2_type 176 236 0 270 154 0 0 chr9 9573978 9574017 -132697427 + MER57A LTR ERV1 295 333 -70 27 0 0 0 chr9 9574019 9574046 -132697398 + AT_rich Low_complexity Low_complexity 1 27 0 503 283 21 26 chr9 9576241 9576432 -132695012 - L1MA9 LINE L1 -173 6139 5950 323 148 0 0 chr9 9576498 9576552 -132694892 - L1MA9 LINE L1 -375 5937 5884 22 0 0 0 chr9 9577306 9577328 -132694116 + AT_rich Low_complexity Low_complexity 1 22 0 921 204 0 52 chr9 9579862 9580092 -132691352 - MER20 DNA MER1_type -1 218 1 2324 85 0 0 chr9 9580264 9580558 -132690886 + AluSc SINE Alu 13 306 -3 396 286 111 20 chr9 9581249 9581448 -132689996 + MIR SINE MIR 44 260 -2 236 98 0 24 chr9 9581570 9581611 -132689833 + (CA)n Simple_repeat Simple_repeat 2 41 0 225 0 0 0 chr9 9581613 9581638 -132689806 + (A)n Simple_repeat Simple_repeat 1 25 0 1147 147 5 0 chr9 9582447 9582631 -132688813 - AluSq SINE Alu -2 311 127 2197 87 13 13 chr9 9582636 9582948 -132688496 - AluSp SINE Alu -1 312 1 2822 139 23 12 chr9 9583273 9583754 -132687690 + L1PA15 LINE L1 5673 6158 -7 25 51 0 0 chr9 9586197 9586236 -132685208 + AT_rich Low_complexity Low_complexity 1 39 0 375 268 12 24 chr9 9586640 9586808 -132684636 + (CATATA)n Simple_repeat Simple_repeat 3 168 0 268 138 447 0 chr9 9588457 9588551 -132682893 + L1MA4 LINE L1 6164 6299 -1 23 33 0 0 chr9 9588610 9588640 -132682804 + AT_rich Low_complexity Low_complexity 1 30 0 872 244 65 98 chr9 9589719 9590289 -132681155 + MLT1G LTR MaLR 40 590 0 408 284 168 10 chr9 9590339 9590536 -132680908 - MIR SINE MIR -27 235 8 26 0 0 0 chr9 9591904 9591930 -132679514 + AT_rich Low_complexity Low_complexity 1 26 0 359 329 64 7 chr9 9592597 9592737 -132678707 - MIR SINE MIR -78 184 37 2440 73 3 0 chr9 9594357 9594660 -132676784 + AluY SINE Alu 1 304 -7 296 230 23 46 chr9 9594886 9594973 -132676471 + MIR3 SINE MIR 118 202 -6 29 0 0 0 chr9 9595277 9595306 -132676138 + AT_rich Low_complexity Low_complexity 1 29 0 2261 120 20 3 chr9 9595441 9595790 -132675654 - THE1A LTR MaLR 0 355 1 1997 150 3 10 chr9 9595898 9596211 -132675233 + AluSx SINE Alu 1 311 -1 2121 117 0 7 chr9 9596318 9596617 -132674827 + AluY SINE Alu 1 297 -14 306 217 23 132 chr9 9597419 9597548 -132673896 + MER117 DNA MER1_type 57 171 -26 580 268 108 10 chr9 9598278 9598472 -132672972 - MLT1J2 LTR MaLR -15 435 223 337 311 16 8 chr9 9600213 9600335 -132671109 + L1M4 LINE L1 3339 3461 -2685 898 272 92 65 chr9 9600991 9601586 -132669858 - MLT1L LTR MaLR -2 613 3 260 303 193 29 chr9 9602413 9602687 -132668757 - L2 LINE L2 0 3313 2995 242 330 18 18 chr9 9602745 9602857 -132668587 - L2 LINE L2 -446 2868 2757 26 0 0 0 chr9 9603460 9603486 -132667958 + AT_rich Low_complexity Low_complexity 1 26 0 2293 119 0 0 chr9 9603490 9603793 -132667651 - AluSx SINE Alu -7 305 3 252 100 0 0 chr9 9603815 9603855 -132667589 + (TG)n Simple_repeat Simple_repeat 2 41 0 27 0 0 0 chr9 9604999 9605026 -132666418 + AT_rich Low_complexity Low_complexity 1 27 0 2179 96 0 0 chr9 9606974 9607245 -132664199 + AluSg SINE Alu 22 292 -18 2174 83 0 7 chr9 9607425 9607713 -132663731 + AluSp SINE Alu 1 286 -27 246 132 0 0 chr9 9608476 9608514 -132662930 - L2 LINE L2 -4 3268 3231 2165 76 21 14 chr9 9608688 9608979 -132662465 - AluSg SINE Alu -17 293 1 1257 308 78 54 chr9 9609416 9610212 -132661232 + L2 LINE L2 1795 2609 -705 325 258 0 22 chr9 9610407 9610496 -132660948 + GA-rich Low_complexity Low_complexity 2 88 0 1490 113 66 51 chr9 9610767 9611024 -132660420 + AluSg SINE Alu 49 309 -1 1096 116 24 0 chr9 9611303 9611467 -132659977 - AluSg/x SINE Alu -19 293 126 3972 161 19 48 chr9 9614295 9614464 -132656980 + L1MA8 LINE L1 5442 5614 -677 2360 96 0 16 chr9 9614464 9614777 -132656667 + AluSq SINE Alu 1 308 -5 3972 161 19 48 chr9 9614777 9615305 -132656139 + L1MA8 LINE L1 5614 6112 -179 2458 84 0 3 chr9 9615305 9615616 -132655828 + AluY SINE Alu 1 310 -1 3972 161 19 48 chr9 9615616 9615790 -132655654 + L1MA8 LINE L1 6112 6289 -2 431 312 89 46 chr9 9615974 9616211 -132655233 + MIR SINE MIR 13 259 -3 1972 153 3 0 chr9 9616407 9616708 -132654736 + AluJb SINE Alu 1 302 -10 24 32 0 0 chr9 9617369 9617400 -132654044 + AT_rich Low_complexity Low_complexity 1 31 0 364 277 23 39 chr9 9617660 9617790 -132653654 - MER5B DNA MER1_type 0 178 51 725 227 305 32 chr9 9617845 9618343 -132653101 + L1MC3 LINE L1 5684 6317 -1468 2257 71 0 4 chr9 9618810 9619091 -132652353 - AluSq SINE Alu -33 280 1 237 33 0 0 chr9 9620379 9620409 -132651035 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 837 230 56 136 chr9 9620621 9621069 -132650375 + L2 LINE L2 2852 3263 -50 21 0 0 0 chr9 9621537 9621558 -132649886 + AT_rich Low_complexity Low_complexity 1 21 0 367 336 9 9 chr9 9621558 9621674 -132649770 - MIR SINE MIR -144 118 3 272 75 0 0 chr9 9622169 9622209 -132649235 + MADE1 DNA Mariner 41 80 0 269 333 115 10 chr9 9622696 9622888 -132648556 + MER102b DNA MER1_type 105 316 -25 1077 190 109 16 chr9 9622989 9623236 -132648208 + AluJb SINE Alu 34 303 -9 302 354 104 17 chr9 9623434 9623674 -132647770 + L2 LINE L2 2496 2756 -558 354 345 53 18 chr9 9623675 9623846 -132647598 - MER5B DNA MER1_type -1 177 1 933 239 52 0 chr9 9625617 9625830 -132645614 + MER58A DNA MER1_type 1 224 0 201 74 0 0 chr9 9625920 9625947 -132645497 + (A)n Simple_repeat Simple_repeat 1 27 0 565 288 96 34 chr9 9626069 9626578 -132644866 - MLT1H LTR MaLR 0 555 1 21 0 0 0 chr9 9627111 9627132 -132644312 + AT_rich Low_complexity Low_complexity 1 21 0 2159 139 0 3 chr9 9627219 9627528 -132643916 + AluSx SINE Alu 1 308 -4 40 49 0 0 chr9 9627581 9627642 -132643802 + AT_rich Low_complexity Low_complexity 1 61 0 479 326 78 10 chr9 9627658 9627851 -132643593 - MIR SINE MIR 0 262 57 345 161 37 25 chr9 9628014 9628095 -132643349 + MER20 DNA MER1_type 1 82 -137 387 0 0 0 chr9 9628196 9628239 -132643205 + (TG)n Simple_repeat Simple_repeat 2 44 0 314 281 52 85 chr9 9629225 9629495 -132641949 + L2 LINE L2 2883 3143 -170 189 330 70 62 chr9 9630455 9630713 -132640731 + L2 LINE L2 2563 2822 -492 1594 172 0 14 chr9 9630741 9631020 -132640424 + AluJb SINE Alu 17 291 -21 754 200 16 11 chr9 9631053 9631243 -132640201 + L1MC4a LINE L1 7618 7808 0 22 35 0 0 chr9 9631347 9631376 -132640068 + AT_rich Low_complexity Low_complexity 1 29 0 345 342 17 8 chr9 9631383 9631500 -132639944 + L2 LINE L2 3189 3306 -7 601 313 84 13 chr9 9631694 9631921 -132639523 - MIR SINE MIR 0 262 20 363 73 0 0 chr9 9632083 9632138 -132639306 + (CA)n Simple_repeat Simple_repeat 2 56 0 909 120 15 0 chr9 9632378 9632511 -132638933 + AluJb SINE Alu 1 135 -177 417 109 0 0 chr9 9632656 9632720 -132638724 + (TA)n Simple_repeat Simple_repeat 2 65 0 1322 155 3 123 chr9 9632724 9633066 -132638378 + AluJo SINE Alu 2 302 0 770 219 26 0 chr9 9633704 9633891 -132637553 - AluJo SINE Alu 0 319 129 501 82 0 12 chr9 9633898 9633983 -132637461 - L1MB8 LINE L1 -2 6176 6093 2280 91 0 7 chr9 9634116 9634413 -132637031 + AluSp SINE Alu 1 295 -18 807 171 0 0 chr9 9634524 9634647 -132636797 - AluJo SINE Alu -188 124 2 2044 128 7 0 chr9 9634853 9635143 -132636301 + AluSx SINE Alu 6 297 -15 189 159 159 45 chr9 9635611 9635655 -132635789 + L2 LINE L2 3216 3264 -8 438 284 28 103 chr9 9635673 9635955 -132635489 - MIR SINE MIR 0 262 2 2458 72 0 0 chr9 9636125 9636431 -132635013 + AluY SINE Alu 1 306 -5 197 135 0 27 chr9 9640788 9640825 -132630619 - L2 LINE L2 -13 3300 3265 343 254 36 18 chr9 9641157 9641267 -132630177 - MER5A DNA MER1_type -7 182 71 2065 155 7 0 chr9 9641284 9641594 -132629850 - AluSx SINE Alu 0 312 1 467 118 15 0 chr9 9641638 9641706 -132629738 - MER5A DNA MER1_type -116 73 5 2177 122 3 7 chr9 9641778 9642082 -132629362 + AluSx SINE Alu 1 303 -9 2057 124 0 7 chr9 9643808 9644099 -132627345 - AluSg SINE Alu -21 289 1 689 245 32 68 chr9 9644566 9644920 -132626524 + L1MC5 LINE L1 6730 7050 -911 677 183 167 6 chr9 9645504 9645684 -132625760 + MER3 DNA MER1_type 1 209 0 2018 133 98 21 chr9 9645861 9646199 -132625245 + THE1B LTR MaLR 1 364 0 268 159 0 0 chr9 9646282 9646326 -132625118 + 5S rRNA rRNA 1 44 -77 2202 129 0 22 chr9 9647722 9648039 -132623405 - AluSg SINE Alu 0 310 1 708 158 44 27 chr9 9648376 9648559 -132622885 - L1MA8 LINE L1 0 6291 6106 602 250 17 28 chr9 9649038 9649214 -132622230 + MER20 DNA MER1_type 46 219 0 5858 119 15 18 chr9 9649721 9649942 -132621502 + L1PB1 LINE L1 4958 5178 -973 339 25 0 0 chr9 9649942 9649982 -132621462 + (TAA)n Simple_repeat Simple_repeat 2 41 0 5858 119 15 18 chr9 9649982 9650956 -132620488 + L1PB1 LINE L1 5178 6150 -1 250 342 71 27 chr9 9651261 9651445 -132619999 - MIR3 SINE MIR -1 207 16 261 0 0 0 chr9 9651935 9651964 -132619480 + (TC)n Simple_repeat Simple_repeat 2 30 0 1550 185 18 4 chr9 9651964 9652240 -132619204 - AluJo SINE Alu -28 284 5 828 169 0 0 chr9 9652862 9652992 -132618452 + FLAM_C SINE Alu 1 130 -3 4940 70 9 0 chr9 9653374 9654036 -132617408 + HERV17 LTR ERV1 5352 6019 -2607 285 51 0 0 chr9 9654029 9654068 -132617376 + HERV17 LTR ERV1 7510 7548 -1078 * 2229 52 10 0 chr9 9654058 9654347 -132617097 + HERV17 LTR ERV1 8335 8626 0 2392 40 28 31 chr9 9654347 9654674 -132616770 + LTR17 LTR ERV1 1 326 -454 255 125 0 0 chr9 9654674 9654714 -132616730 + (A)n Simple_repeat Simple_repeat 1 40 0 1795 166 3 7 chr9 9654780 9655076 -132616368 + AluSp SINE Alu 1 295 -18 242 168 74 11 chr9 9655160 9655255 -132616189 - Charlie7 DNA MER1_type -74 2538 2438 2000 136 3 23 chr9 9655329 9655639 -132615805 - AluSx SINE Alu -6 306 3 2144 115 0 0 chr9 9655991 9656279 -132615165 - AluSx SINE Alu -24 288 1 421 301 113 58 chr9 9656302 9656754 -132614690 - L2 LINE L2 -175 3138 2653 201 74 0 0 chr9 9657224 9657251 -132614193 + (A)n Simple_repeat Simple_repeat 1 27 0 883 254 53 82 chr9 9657698 9657899 -132613545 + MLT1H LTR MaLR 64 269 -280 4445 59 0 4 chr9 9657899 9658455 -132612989 + MER41A LTR ERV1 1 554 0 883 254 53 82 chr9 9658455 9658754 -132612690 + MLT1H LTR MaLR 269 549 0 1678 250 69 30 chr9 9659525 9659684 -132611760 + L1ME LINE L1 4381 4532 -1614 2193 107 0 0 chr9 9659684 9659974 -132611470 + AluSx SINE Alu 1 290 -22 1678 250 69 30 chr9 9659974 9660645 -132610799 + L1ME LINE L1 4532 5243 -903 878 273 92 30 chr9 9660709 9661069 -132610375 + L1ME LINE L1 5325 5722 -448 2329 91 3 0 chr9 9661069 9661367 -132610077 + AluSq SINE Alu 1 299 -14 878 273 92 30 chr9 9661367 9661472 -132609972 + L1ME LINE L1 5722 5819 -351 278 257 73 37 chr9 9661947 9662056 -132609388 + MIR SINE MIR 17 129 -79 212 279 39 84 chr9 9662031 9662185 -132609259 + L2 LINE L2 3081 3227 -86 * 336 274 161 0 chr9 9662818 9662942 -132608502 + MIR SINE MIR 49 192 -70 1531 198 7 7 chr9 9663517 9663810 -132607634 - AluJb SINE Alu -19 293 1 2044 135 0 0 chr9 9663873 9664154 -132607290 + AluSx SINE Alu 1 281 -31 907 169 46 62 chr9 9664364 9664559 -132606885 - AluJb SINE Alu -4 308 117 526 141 0 0 chr9 9664659 9664737 -132606707 + AluSg/x SINE Alu 207 284 -26 482 119 12 0 chr9 9665196 9665280 -132606164 + (TA)n Simple_repeat Simple_repeat 1 85 0 868 201 46 0 chr9 9665792 9665986 -132605458 - MER105 DNA DNA -1 203 1 500 65 0 0 chr9 9666353 9666415 -132605029 - AluY SINE Alu -16 296 235 1306 81 0 0 chr9 9666416 9666576 -132604868 - AluY SINE Alu -151 160 1 1659 169 0 72 chr9 9666624 9666943 -132604501 - AluJb SINE Alu -16 296 1 214 244 0 47 chr9 9667185 9667271 -132604173 + T-rich Low_complexity Low_complexity 1 82 0 985 114 0 0 chr9 9667649 9667781 -132603663 - AluSx SINE Alu -139 173 42 273 29 0 0 chr9 9668186 9668220 -132603224 + (TG)n Simple_repeat Simple_repeat 1 34 0 2132 117 3 3 chr9 9669778 9670078 -132601366 + AluSx SINE Alu 1 300 -12 198 0 0 0 chr9 9671185 9671207 -132600237 + (T)n Simple_repeat Simple_repeat 1 22 0 26 0 0 0 chr9 9671397 9671423 -132600021 + AT_rich Low_complexity Low_complexity 1 26 0 267 365 19 10 chr9 9671506 9671610 -132599834 + MER5A DNA MER1_type 72 176 -13 184 280 227 8 chr9 9671716 9671848 -132599596 - MIR3 SINE MIR -11 197 37 222 281 61 24 chr9 9672079 9672161 -132599283 - MIR SINE MIR -115 147 63 295 211 14 0 chr9 9673353 9673424 -132598020 - Charlie8 DNA MER1_type -2272 145 74 338 289 13 39 chr9 9673582 9673738 -132597706 - LTR16C LTR ERVL -244 247 96 192 238 0 0 chr9 9674961 9675024 -132596420 + (TA)n Simple_repeat Simple_repeat 2 64 0 454 391 55 19 chr9 9675550 9675972 -132595472 + L3 LINE CR1 284 720 -857 1233 180 0 21 chr9 9676156 9676395 -132595049 - AluJo SINE Alu -78 234 1 292 301 159 51 chr9 9676658 9676834 -132594610 + L2 LINE L2 3068 3262 -10 194 277 15 46 chr9 9679091 9679156 -132592288 - L2 LINE L2 -37 3276 3214 993 168 19 93 chr9 9680139 9680353 -132591091 + AluJo SINE Alu 85 282 -30 27 100 0 0 chr9 9680995 9681085 -132590359 + AT_rich Low_complexity Low_complexity 1 90 0 1969 150 3 7 chr9 9681794 9682088 -132589356 + AluSx SINE Alu 1 293 -19 210 167 37 19 chr9 9682104 9682158 -132589286 + (TATAA)n Simple_repeat Simple_repeat 3 57 0 1909 137 18 0 chr9 9683080 9683400 -132588044 + AluSg SINE Alu 1 325 0 1644 201 67 93 chr9 9683725 9684307 -132587137 + MLT1F1 LTR MaLR 1 567 0 323 319 37 37 chr9 9684344 9684507 -132586937 + MIR3 SINE MIR 14 176 -32 193 277 12 72 chr9 9684650 9684695 -132586749 + L3 LINE CR1 1497 1536 -41 4586 164 33 9 chr9 9684695 9685540 -132585904 + MER6 DNA MER2_type 1 865 0 193 277 12 72 chr9 9685540 9685577 -132585867 + L3 LINE CR1 1536 1574 -3 2366 94 3 0 chr9 9685682 9685980 -132585464 - AluSq SINE Alu -13 300 2 329 319 76 14 chr9 9685984 9686128 -132585316 + L1MC/D LINE L1 5607 5759 -2049 696 203 21 112 chr9 9686212 9686399 -132585045 + MER5B DNA MER1_type 8 177 -1 816 199 0 53 chr9 9686681 9686852 -132584592 + AluJo SINE Alu 5 166 -146 1623 167 7 14 chr9 9686853 9687129 -132584315 + AluJb SINE Alu 21 294 -18 22 0 0 0 chr9 9687683 9687705 -132583739 + AT_rich Low_complexity Low_complexity 1 22 0 2116 115 3 13 chr9 9688563 9688877 -132582567 + AluSx SINE Alu 1 311 -1 2346 66 0 7 chr9 9689463 9689750 -132581694 + AluY SINE Alu 2 286 -25 412 231 74 133 chr9 9689966 9690169 -132581275 - MIR SINE MIR 0 262 72 26 30 0 0 chr9 9690882 9690915 -132580529 + AT_rich Low_complexity Low_complexity 1 33 0 2078 121 7 0 chr9 9690937 9691226 -132580218 + AluSx SINE Alu 1 291 -21 516 284 35 12 chr9 9691739 9691908 -132579536 - MIR SINE MIR -74 188 16 26 50 0 0 chr9 9691966 9692006 -132579438 + AT_rich Low_complexity Low_complexity 1 40 0 246 32 0 0 chr9 9692831 9692862 -132578582 + (TC)n Simple_repeat Simple_repeat 1 31 0 2149 93 4 0 chr9 9693240 9693518 -132577926 - AluSg1 SINE Alu -30 279 1 374 264 24 16 chr9 9694244 9694367 -132577077 - MIR SINE MIR -78 130 30 215 285 98 24 chr9 9694448 9694571 -132576873 + L2 LINE L2 2629 2760 -554 475 319 109 22 chr9 9694653 9695010 -132576434 + L2 LINE L2 1983 2370 -944 992 143 22 28 chr9 9695032 9695214 -132576230 + AluJb SINE Alu 108 288 -24 267 20 0 78 chr9 9695215 9695266 -132576178 + (GGAAA)n Simple_repeat Simple_repeat 1 47 0 3850 121 4 0 chr9 9695286 9695838 -132575606 - MER41A LTR ERV1 0 554 1 7819 129 37 3 chr9 9695838 9697135 -132574309 - MER41A-int LTR ERV1 -2 5944 4604 3311 110 24 0 chr9 9697141 9697651 -132573793 - MER41A LTR ERV1 -32 522 1 596 348 92 20 chr9 9697748 9698366 -132573078 + L2 LINE L2 2589 3256 -16 282 345 43 75 chr9 9698483 9698590 -132572854 + L2 LINE L2 2933 3042 -230 211 53 26 26 chr9 9698590 9698628 -132572816 + (CA)n Simple_repeat Simple_repeat 2 39 0 282 345 43 75 chr9 9698628 9698775 -132572669 + L2 LINE L2 3042 3179 -93 2175 131 0 0 chr9 9698881 9699179 -132572265 + AluSx SINE Alu 1 298 -14 21 0 0 0 chr9 9699465 9699486 -132571958 + AT_rich Low_complexity Low_complexity 1 21 0 1721 187 25 8 chr9 9699776 9700129 -132571315 + MLT1A1 LTR MaLR 5 363 -2 1215 189 41 78 chr9 9700665 9701052 -132570392 - L1ME2 LINE L1 -1 6163 5791 386 305 102 11 chr9 9701276 9701463 -132569981 + MIR SINE MIR 1 204 -58 860 265 12 31 chr9 9701582 9701839 -132569605 - MIR SINE MIR -7 255 4 234 333 0 26 chr9 9702614 9702692 -132568752 - MIR3 SINE MIR -24 184 109 236 277 12 12 chr9 9703662 9703745 -132567699 - MIR SINE MIR -44 218 136 1630 186 0 18 chr9 9703774 9704054 -132567390 - AluJo SINE Alu -37 275 1 293 267 80 0 chr9 9704055 9704130 -132567314 - MIR SINE MIR -115 147 67 205 262 0 0 chr9 9704879 9704921 -132566523 + polypyrimidine Low_complexity Low_complexity 4 45 0 23 0 0 0 chr9 9705074 9705097 -132566347 + AT_rich Low_complexity Low_complexity 1 23 0 1983 114 10 10 chr9 9705099 9705389 -132566055 - AluSx SINE Alu -22 290 1 331 313 27 27 chr9 9705787 9705899 -132565545 - MIR SINE MIR -63 145 34 4178 79 2 2 chr9 9705982 9706536 -132564908 - MER41A LTR ERV1 0 554 1 216 325 76 45 chr9 9707828 9707985 -132563459 - MIR SINE MIR -75 187 26 270 330 54 9 chr9 9708096 9708208 -132563236 + L2 LINE L2 3197 3313 0 688 163 16 8 chr9 9708832 9708955 -132562489 + FRAM SINE Alu 43 166 -10 253 344 82 41 chr9 9708968 9709090 -132562354 - L2 LINE L2 -19 3253 3127 24 0 0 0 chr9 9709599 9709623 -132561821 + AT_rich Low_complexity Low_complexity 1 24 0 291 146 21 0 chr9 9709631 9709679 -132561765 - U7 snRNA snRNA -1 62 14 23 54 0 0 chr9 9709916 9709953 -132561491 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr9 9710511 9710533 -132560911 + AT_rich Low_complexity Low_complexity 1 22 0 1975 120 7 14 chr9 9711357 9711649 -132559795 + AluSx SINE Alu 1 290 -22 797 188 0 0 chr9 9712182 9712315 -132559129 + FLAM_A SINE Alu 1 133 0 1590 221 127 43 chr9 9713252 9713741 -132557703 - MLT1F LTR MaLR -9 533 4 196 354 31 0 chr9 9713758 9713823 -132557621 + MIR SINE MIR 67 133 -75 237 315 14 0 chr9 9713969 9714042 -132557402 + GA-rich Low_complexity Low_complexity 4 77 0 753 115 0 0 chr9 9715188 9715301 -132556143 + AluSg/x SINE Alu 190 302 -8 2386 101 0 0 chr9 9715303 9715610 -132555834 + AluSg SINE Alu 3 309 -1 653 222 31 25 chr9 9715823 9715985 -132555459 + MER3 DNA MER1_type 1 163 -46 213 253 152 25 chr9 9716176 9716255 -132555189 - L2 LINE L2 0 3313 3225 1107 115 0 0 chr9 9716256 9716413 -132555031 + AluSg/x SINE Alu 150 306 -6 202 230 27 68 chr9 9716413 9716487 -132554957 - L2 LINE L2 -85 3228 3158 1690 200 3 0 chr9 9716509 9716804 -132554640 + AluJo SINE Alu 1 296 -16 483 230 37 12 chr9 9716901 9717062 -132554382 - L1M4 LINE L1 -1033 5113 4949 2428 75 3 28 chr9 9717536 9717856 -132553588 + AluSp SINE Alu 1 312 -1 256 275 0 46 chr9 9718382 9718491 -132552953 + CT-rich Low_complexity Low_complexity 4 107 0 257 237 26 26 chr9 9718884 9718960 -132552484 + MARNA DNA Mariner 460 535 -51 325 142 9 8 chr9 9718975 9719200 -132552244 + AluJo SINE Alu 1 294 -8 2282 96 0 16 chr9 9719398 9719711 -132551733 + AluSx SINE Alu 3 310 -2 333 0 0 0 chr9 9720040 9720077 -132551367 + (CA)n Simple_repeat Simple_repeat 2 38 0 409 326 54 33 chr9 9722512 9722696 -132548748 + MIR SINE MIR 49 236 -26 2309 84 7 7 chr9 9723239 9723538 -132547906 + AluSg SINE Alu 1 299 -11 899 108 7 0 chr9 9723658 9723797 -132547647 + L1MA8 LINE L1 6021 6160 -131 704 136 179 0 chr9 9723799 9723961 -132547483 + L1MA8 LINE L1 6079 6269 -22 488 325 12 0 chr9 9727230 9727399 -132544045 - MIR SINE MIR -26 236 66 1514 136 31 19 chr9 9728891 9729149 -132542295 + AluJb SINE Alu 37 297 -15 417 116 64 23 chr9 9729170 9729343 -132542101 + (TA)n Simple_repeat Simple_repeat 1 180 0 1611 176 38 3 chr9 9729543 9729832 -132541612 + AluJb SINE Alu 1 299 -13 892 142 0 0 chr9 9730306 9730433 -132541011 - FLAM_C SINE Alu -16 127 1 427 159 0 0 chr9 9730479 9730548 -132540896 + L1PA16 LINE L1 6089 6157 -9 2544 65 3 0 chr9 9731301 9731607 -132539837 + AluSp SINE Alu 1 307 -6 222 170 208 0 chr9 9731985 9732038 -132539406 - MIR SINE MIR -111 151 88 367 354 76 8 chr9 9732201 9732543 -132538901 - L2 LINE L2 -221 3051 2688 3453 218 48 75 chr9 9732543 9733475 -132537969 + L1MEc LINE L1 36 933 -5463 1518 164 25 0 chr9 9733475 9733719 -132537725 - AluJo SINE Alu -13 299 50 3453 218 48 75 chr9 9733719 9733935 -132537509 + L1MEc LINE L1 933 1153 -5243 225 0 0 0 chr9 9733973 9733998 -132537446 + (TTG)n Simple_repeat Simple_repeat 2 26 0 887 68 38 8 chr9 9734027 9734159 -132537285 - L1MA3 LINE L1 -1 6304 6169 21 0 0 0 chr9 9734297 9734318 -132537126 + AT_rich Low_complexity Low_complexity 1 21 0 201 180 0 0 chr9 9735151 9735201 -132536243 + CT-rich Low_complexity Low_complexity 1 50 0 288 0 0 0 chr9 9736091 9736123 -132535321 + (CA)n Simple_repeat Simple_repeat 2 33 0 416 258 32 39 chr9 9736921 9737076 -132534368 - MIR SINE MIR 0 262 109 476 276 32 101 chr9 9737786 9737894 -132533550 + L2 LINE L2 3027 3141 -172 1838 154 6 28 chr9 9737894 9738212 -132533232 - AluJb SINE Alu 0 312 2 476 276 32 101 chr9 9738212 9738411 -132533033 + L2 LINE L2 3141 3313 0 2054 75 0 4 chr9 9738963 9739218 -132532226 - AluSc SINE Alu -2 307 54 2110 108 38 0 chr9 9739401 9739689 -132531755 - AluSx SINE Alu -12 300 2 1500 214 20 17 chr9 9739858 9740177 -132531267 - AluJb SINE Alu 0 312 1 2122 107 4 0 chr9 9741676 9742000 -132529444 - AluSx SINE Alu 0 325 1 2268 123 51 14 chr9 9742560 9742911 -132528533 + THE1B LTR MaLR 1 364 0 23 0 0 0 chr9 9743803 9743826 -132527618 + AT_rich Low_complexity Low_complexity 1 23 0 2162 102 3 0 chr9 9744105 9744398 -132527046 + AluSx SINE Alu 1 294 -18 303 242 121 0 chr9 9745322 9745421 -132526023 - MER94 DNA DNA -23 111 1 609 230 54 7 chr9 9745841 9745989 -132525455 + MER3 DNA MER1_type 2 156 -53 197 266 165 25 chr9 9746250 9746329 -132525115 + MIR3 SINE MIR 93 182 -26 27 0 0 0 chr9 9748547 9748574 -132522870 + AT_rich Low_complexity Low_complexity 1 27 0 475 308 66 85 chr9 9748731 9749360 -132522084 - L2 LINE L2 -41 3231 2635 1581 162 0 46 chr9 9750696 9750980 -132520464 - AluJo SINE Alu 0 312 42 363 300 34 11 chr9 9751100 9751247 -132520197 + MIR SINE MIR 6 152 -64 241 328 16 55 chr9 9751355 9751483 -132519961 + MIR SINE MIR 132 254 -8 1341 103 5 0 chr9 9751678 9751862 -132519582 - AluY SINE Alu -7 304 120 1495 41 0 0 chr9 9751862 9752031 -132519413 - AluY SINE Alu -140 171 3 364 303 0 18 chr9 9754246 9754355 -132517089 - MIR SINE MIR -108 154 48 21 0 0 0 chr9 9755528 9755549 -132515895 + AT_rich Low_complexity Low_complexity 1 21 0 6574 48 22 0 chr9 9756351 9757182 -132514262 + L1PA7 LINE L1 5306 6154 0 474 252 23 8 chr9 9757315 9757446 -132513998 + MIR3 SINE MIR 70 202 -6 180 398 11 0 chr9 9757838 9757926 -132513518 - L2 LINE L2 -44 3228 3140 186 262 0 0 chr9 9757992 9758034 -132513410 + L2 LINE L2 3256 3297 -16 371 329 29 61 chr9 9758102 9758348 -132513096 - L2 LINE L2 -196 3076 2839 24 0 0 0 chr9 9758526 9758550 -132512894 + AT_rich Low_complexity Low_complexity 1 24 0 684 191 14 7 chr9 9759060 9759207 -132512237 + L1MA3 LINE L1 6158 6305 0 421 343 77 0 chr9 9759859 9760028 -132511416 + L2 LINE L2 2872 3053 -219 238 244 215 15 chr9 9760522 9760657 -132510787 + MIR SINE MIR 52 213 -49 403 283 6 24 chr9 9760995 9761161 -132510283 + CT-rich Low_complexity Low_complexity 2 164 0 210 71 0 0 chr9 9761164 9761192 -132510252 + (T)n Simple_repeat Simple_repeat 1 28 0 183 80 0 0 chr9 9765322 9765347 -132506097 + (T)n Simple_repeat Simple_repeat 1 25 0 2044 108 16 32 chr9 9765397 9765713 -132505731 - AluSq SINE Alu -2 311 1 249 108 0 0 chr9 9766831 9766868 -132504576 + (TG)n Simple_repeat Simple_repeat 1 37 0 1985 126 4 0 chr9 9767408 9767685 -132503759 + AluSx SINE Alu 22 299 -13 262 186 23 23 chr9 9767963 9768049 -132503395 + (CATG)n Simple_repeat Simple_repeat 2 87 0 459 182 36 24 chr9 9768087 9768252 -132503192 + (CATG)n Simple_repeat Simple_repeat 1 167 0 1770 161 21 3 chr9 9768335 9768621 -132502823 + AluSx SINE Alu 1 291 -21 12442 86 9 120 chr9 9768757 9770401 -132501043 - L1P LINE L1 -1116 5030 3746 7467 39 0 2 chr9 9770401 9772084 -132499360 - L1PA5 LINE L1 -9 6145 4465 12442 86 9 120 chr9 9772084 9772897 -132498547 - L1P LINE L1 -2400 3746 2845 6110 100 8 0 chr9 9772893 9773762 -132497682 - L1P3 LINE L1 -5584 877 2 * 198 0 0 0 chr9 9773773 9773795 -132497649 + (T)n Simple_repeat Simple_repeat 1 22 0 1662 62 40 22 chr9 9774020 9774246 -132497198 + MER30 DNA MER1_type 1 230 0 1982 120 0 0 chr9 9774336 9774649 -132496795 - AluSx SINE Alu 0 313 1 272 330 42 25 chr9 9774909 9775027 -132496417 + MER5B DNA MER1_type 20 139 -39 218 266 107 130 chr9 9774914 9775030 -132496414 - MER5A DNA MER1_type -24 165 53 * 2260 124 0 0 chr9 9775030 9775329 -132496115 - AluSx SINE Alu -13 299 1 218 266 107 130 chr9 9775329 9775381 -132496063 - MER5A DNA MER1_type -136 53 1 1977 93 0 99 chr9 9776174 9776498 -132494946 - AluSc SINE Alu -17 292 1 2334 103 0 0 chr9 9776504 9776877 -132494567 - AluSx SINE Alu 0 373 1 23 0 0 0 chr9 9777591 9777614 -132493830 + AT_rich Low_complexity Low_complexity 1 23 0 313 303 33 49 chr9 9778591 9778835 -132492609 + L2 LINE L2 2090 2329 -985 864 82 0 0 chr9 9779130 9779265 -132492179 + (TA)n Simple_repeat Simple_repeat 2 136 0 2275 95 34 0 chr9 9779639 9779934 -132491510 + AluSx SINE Alu 1 305 -7 237 386 44 0 chr9 9780669 9780783 -132490661 - MIR SINE MIR -20 242 124 314 252 115 43 chr9 9781412 9781551 -132489893 - MIR3 SINE MIR -23 185 37 180 0 0 0 chr9 9781827 9781847 -132489597 + (TG)n Simple_repeat Simple_repeat 2 21 0 201 178 22 22 chr9 9781847 9781883 -132489561 + GA-rich Low_complexity Low_complexity 7 45 0 1156 321 147 29 chr9 9781903 9782629 -132488815 + L2 LINE L2 1992 2803 -511 182 128 26 0 chr9 9782688 9782727 -132488717 + (TA)n Simple_repeat Simple_repeat 2 41 0 319 265 76 53 chr9 9782807 9782939 -132488505 + L2 LINE L2 3178 3312 -1 21 71 0 0 chr9 9783741 9783783 -132487661 + AT_rich Low_complexity Low_complexity 1 42 0 5058 175 16 4 chr9 9783977 9785204 -132486240 + L1PA16 LINE L1 4921 6166 0 576 312 153 14 chr9 9785699 9786064 -132485380 + L3b LINE CR1 1102 1517 -66 36 0 0 0 chr9 9786299 9786335 -132485109 + AT_rich Low_complexity Low_complexity 1 36 0 195 129 0 0 chr9 9787126 9787157 -132484287 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 479 240 199 14 chr9 9787503 9787649 -132483795 + MER5B DNA MER1_type 1 173 -5 368 333 89 7 chr9 9788292 9788427 -132483017 + L2 LINE L2 3123 3268 -4 284 208 0 0 chr9 9789837 9789890 -132481554 - L2 LINE L2 0 3313 3261 685 297 53 12 chr9 9790726 9790972 -132480472 + MIR SINE MIR 6 261 -1 450 309 20 56 chr9 9791372 9791621 -132479823 + MIR SINE MIR 23 262 0 296 339 17 44 chr9 9791795 9791975 -132479469 - L2 LINE L2 -173 3099 2925 270 319 0 0 chr9 9792790 9792859 -132478585 - L2 LINE L2 -4 3268 3200 234 62 0 0 chr9 9793222 9793254 -132478190 + (GA)n Simple_repeat Simple_repeat 2 33 0 649 223 120 12 chr9 9793638 9793880 -132477564 + L1ME3A LINE L1 5682 5949 -221 475 194 0 9 chr9 9794156 9794264 -132477180 - L1 LINE L1 -2198 3948 3842 225 132 0 0 chr9 9794437 9794475 -132476969 + (TCC)n Simple_repeat Simple_repeat 1 38 0 336 83 0 0 chr9 9794591 9794639 -132476805 + (TCC)n Simple_repeat Simple_repeat 2 49 0 230 241 0 19 chr9 9794678 9794732 -132476712 + CT-rich Low_complexity Low_complexity 3 55 0 507 45 0 0 chr9 9795302 9795368 -132476076 + (CA)n Simple_repeat Simple_repeat 2 67 0 270 314 137 8 chr9 9797273 9797397 -132474047 - MIR3 SINE MIR -62 146 7 269 262 0 0 chr9 9797499 9797560 -132473884 + MIR3 SINE MIR 138 198 -10 227 224 155 17 chr9 9797808 9797924 -132473520 - MER112 DNA MER1_type -9 251 120 28 0 0 0 chr9 9797927 9797955 -132473489 + AT_rich Low_complexity Low_complexity 1 28 0 505 243 81 29 chr9 9798009 9798182 -132473262 - MIR SINE MIR -70 192 11 2244 101 3 7 chr9 9798580 9798877 -132472567 + AluSx SINE Alu 1 296 -16 2474 42 7 0 chr9 9799278 9799586 -132471858 + L1PA3 LINE L1 5846 6155 0 232 290 58 77 chr9 9802919 9803126 -132468318 + L2 LINE L2 2550 2752 -562 223 231 13 13 chr9 9803751 9803829 -132467615 + CT-rich Low_complexity Low_complexity 2 79 0 300 229 58 133 chr9 9804665 9804790 -132466654 + MER5B DNA MER1_type 4 112 -66 1965 132 7 16 chr9 9804790 9805093 -132466351 - AluSx SINE Alu -12 300 1 300 229 58 133 chr9 9805093 9805155 -132466289 + MER5B DNA MER1_type 112 177 -1 291 227 40 13 chr9 9806098 9806173 -132465271 + MER5A DNA MER1_type 87 163 -26 378 0 0 0 chr9 9807277 9807319 -132464125 + (CA)n Simple_repeat Simple_repeat 2 43 0 367 264 164 0 chr9 9809714 9809824 -132461620 + L2 LINE L2 3145 3272 0 553 283 45 60 chr9 9809836 9810101 -132461343 + L2 LINE L2 3043 3303 -10 205 190 69 17 chr9 9810752 9810810 -132460634 - MIR SINE MIR -110 152 92 2185 123 0 0 chr9 9811031 9811340 -132460104 - AluSc SINE Alu 0 309 1 24 67 0 0 chr9 9811593 9811638 -132459806 + AT_rich Low_complexity Low_complexity 1 45 0 1378 199 31 50 chr9 9812631 9812948 -132458496 - AluJo SINE Alu -1 311 1 189 74 0 0 chr9 9813489 9813516 -132457928 + (TTCA)n Simple_repeat Simple_repeat 4 30 0 242 261 17 118 chr9 9813530 9813649 -132457795 - L2 LINE L2 -19 3253 3147 1437 163 103 39 chr9 9814900 9815182 -132456262 - AluJb SINE Alu -12 300 1 362 264 96 56 chr9 9815237 9815362 -132456082 - L2 LINE L2 0 3272 3143 515 274 39 39 chr9 9816402 9816555 -132454889 - MIR3 SINE MIR -22 186 34 1993 153 0 0 chr9 9816718 9817012 -132454432 + AluSx SINE Alu 1 294 -18 348 264 44 0 chr9 9817212 9817303 -132454141 - MIR SINE MIR 0 262 168 219 371 35 28 chr9 9818147 9818308 -132453136 - MIR SINE MIR -62 146 25 264 250 14 14 chr9 9818917 9818989 -132452455 - L2 LINE L2 0 3313 3242 312 305 166 11 chr9 9819301 9819386 -132452058 - MIR SINE MIR -43 219 149 583 198 27 0 chr9 9819386 9819497 -132451947 + MER81 DNA DNA 1 114 0 312 305 166 11 chr9 9819497 9819598 -132451846 - MIR SINE MIR -113 149 4 2196 127 0 0 chr9 9819604 9819912 -132451532 - AluSq SINE Alu -5 308 1 21 0 0 0 chr9 9820498 9820519 -132450925 + AT_rich Low_complexity Low_complexity 1 21 0 724 293 19 38 chr9 9821065 9821331 -132450113 - MIR SINE MIR 0 262 2 563 324 22 21 chr9 9822911 9823120 -132448324 + MIR SINE MIR 2 213 -49 245 106 0 21 chr9 9823365 9823412 -132448032 + (GA)n Simple_repeat Simple_repeat 1 46 0 460 204 11 11 chr9 9823422 9823515 -132447929 + L2 LINE L2 3180 3272 0 21 0 0 0 chr9 9823565 9823586 -132447858 + AT_rich Low_complexity Low_complexity 1 21 0 4553 92 6 0 chr9 9823586 9824218 -132447226 - L1PB1 LINE L1 -3 6148 5513 2430 55 3 0 chr9 9825254 9825545 -132445899 - AluY SINE Alu -17 294 3 185 255 39 39 chr9 9826467 9826518 -132444926 - MIR3 SINE MIR -18 190 140 * 195 337 22 22 chr9 9826510 9826602 -132444842 - L2 LINE L2 -18 3295 3204 309 227 34 11 chr9 9826609 9826697 -132444747 + L1MCa LINE L1 1979 2068 -4358 * 319 262 71 0 chr9 9826674 9826758 -132444686 + L1MC4 LINE L1 6894 6983 -1339 339 311 0 0 chr9 9826764 9826854 -132444590 + L1MC4 LINE L1 6614 6703 -1339 229 265 0 0 chr9 9827655 9827704 -132443740 + L1ME3A LINE L1 5480 5528 -638 865 303 52 19 chr9 9828140 9828187 -132443257 + L1ME3A LINE L1 5783 5827 -343 2184 128 0 3 chr9 9828187 9828491 -132442953 + AluSq SINE Alu 1 303 -10 865 303 52 19 chr9 9828491 9828809 -132442635 + L1ME3A LINE L1 5827 6160 -10 255 346 6 58 chr9 9831906 9832062 -132439382 + MIR SINE MIR 65 212 -50 21 71 0 0 chr9 9834258 9834300 -132437144 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr9 9834620 9834641 -132436803 + AT_rich Low_complexity Low_complexity 1 21 0 431 264 30 85 chr9 9835547 9835748 -132435696 - MIR SINE MIR -40 222 33 252 330 62 36 chr9 9836011 9836123 -132435321 + MIR3 SINE MIR 45 159 -49 337 350 34 28 chr9 9836332 9836446 -132434998 + MER5A DNA MER1_type 9 126 -63 2188 127 0 6 chr9 9836446 9836760 -132434684 - AluSx SINE Alu 0 312 1 337 350 34 28 chr9 9836760 9836822 -132434622 + MER5A DNA MER1_type 126 186 -3 767 168 7 13 chr9 9837263 9837412 -132434032 - L1PA16 LINE L1 0 6166 6019 194 250 60 0 chr9 9837771 9837838 -132433606 + MIR SINE MIR 68 141 -67 775 261 72 13 chr9 9838138 9838444 -132433000 - L1MC4 LINE L1 0 8042 7719 2057 139 14 0 chr9 9838505 9838800 -132432644 + AluSx SINE Alu 1 299 -13 2137 130 0 0 chr9 9839572 9839871 -132431573 + AluSx SINE Alu 1 299 -13 471 299 36 0 chr9 9840487 9840624 -132430820 + MIR SINE MIR 58 199 -63 384 268 18 47 chr9 9841201 9841444 -132430000 + L1MB8 LINE L1 892 1131 -5411 1286 122 0 0 chr9 9841481 9841649 -132429795 + AluY SINE Alu 130 300 -11 189 0 0 0 chr9 9841649 9841670 -132429774 + (TA)n Simple_repeat Simple_repeat 1 21 0 1286 122 0 0 chr9 9841670 9841681 -132429763 + AluY SINE Alu 299 309 -2 1998 279 45 13 chr9 9841691 9842477 -132428967 + L1MB8 LINE L1 1249 2059 -4587 4172 244 58 72 chr9 9842482 9844093 -132427351 + L1MB8 LINE L1 3253 4884 -1792 2683 124 11 30 chr9 9844093 9844136 -132427308 + MSTC LTR MaLR 1 43 -385 2246 78 4 0 chr9 9844136 9844452 -132426992 - AluY SINE Alu 0 317 1 2683 124 11 30 chr9 9844452 9844843 -132426601 + MSTC LTR MaLR 43 428 0 4172 244 58 72 chr9 9844843 9845504 -132425940 + L1MB8 LINE L1 4884 5552 -1124 404 19 19 0 chr9 9845504 9845557 -132425887 + (TG)n Simple_repeat Simple_repeat 1 54 0 4172 244 58 72 chr9 9845557 9846771 -132424673 + L1MB8 LINE L1 5552 6674 -2 23 0 0 0 chr9 9846823 9846846 -132424598 + AT_rich Low_complexity Low_complexity 1 23 0 219 316 143 53 chr9 9846879 9847088 -132424356 + MIR SINE MIR 34 261 -1 24 53 0 0 chr9 9847649 9847687 -132423757 + AT_rich Low_complexity Low_complexity 1 38 0 374 302 30 59 chr9 9848009 9848211 -132423233 - L2 LINE L2 0 3313 3118 3048 221 89 17 chr9 9848226 9849057 -132422387 - MER97a DNA MER1_type 0 894 4 237 352 69 110 chr9 9849103 9849495 -132421949 - L2 LINE L2 -366 2948 2573 226 170 21 0 chr9 9849555 9849602 -132421842 - MLT2C2 LTR ERVL 0 464 417 254 304 25 0 chr9 9849607 9849686 -132421758 + (CATATA)n Simple_repeat Simple_repeat 3 83 0 318 248 58 9 chr9 9849689 9849830 -132421614 - MLT2D LTR ERVL -109 411 238 293 299 80 37 chr9 9850318 9850505 -132420939 + MIR SINE MIR 57 251 -11 221 246 49 0 chr9 9850724 9850785 -132420659 + MIR SINE MIR 128 191 -71 839 169 41 52 chr9 9850899 9851071 -132420373 + AluJo SINE Alu 4 173 -139 381 327 70 0 chr9 9851398 9851554 -132419890 + MIR SINE MIR 13 179 -83 311 261 121 48 chr9 9851560 9851725 -132419719 + MLT1L LTR MaLR 437 613 -2 3050 131 59 85 chr9 9853214 9853254 -132418190 - L1MA9 LINE L1 -2 6310 6270 261 0 0 0 chr9 9853254 9853283 -132418161 + (TG)n Simple_repeat Simple_repeat 2 30 0 * 753 71 0 0 chr9 9853282 9853395 -132418049 + (TA)n Simple_repeat Simple_repeat 1 113 0 3050 131 59 85 chr9 9853283 9854003 -132417441 - L1MA9 LINE L1 -42 6270 5679 1292 151 21 45 chr9 9854002 9854293 -132417151 + L1 LINE L1 4178 4461 -1685 * 1802 155 0 50 chr9 9854991 9855314 -132416130 + AluJb SINE Alu 3 309 -3 227 336 60 87 chr9 9856781 9856930 -132414514 - L2 LINE L2 -1 3271 3127 386 154 13 0 chr9 9857103 9857181 -132414263 + GA-rich Low_complexity Low_complexity 3 81 0 196 30 61 0 chr9 9858721 9858754 -132412690 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2189 99 0 35 chr9 9859141 9859454 -132411990 - AluSx SINE Alu -10 302 1 288 0 0 0 chr9 9859688 9859720 -132411724 + (ATG)n Simple_repeat Simple_repeat 1 32 0 21 36 0 0 chr9 9860032 9860060 -132411384 + AT_rich Low_complexity Low_complexity 1 28 0 203 250 26 13 chr9 9860214 9860290 -132411154 + (TA)n Simple_repeat Simple_repeat 1 77 0 410 245 93 29 chr9 9860332 9860471 -132410973 + MIR SINE MIR 59 206 -56 21 0 0 0 chr9 9860491 9860512 -132410932 + AT_rich Low_complexity Low_complexity 1 21 0 2161 106 0 0 chr9 9860652 9860966 -132410478 - AluSq SINE Alu 0 314 1 5817 160 19 36 chr9 9861688 9863789 -132407655 + L1MA3 LINE L1 4185 6174 -131 4956 239 35 22 chr9 9863889 9863976 -132407468 - L1P LINE L1 -2274 3872 3788 1722 174 21 0 chr9 9863976 9864263 -132407181 - AluJo SINE Alu -19 293 1 4956 239 35 22 chr9 9864263 9865445 -132405999 - L1P LINE L1 -2358 3788 2579 2146 109 10 16 chr9 9865445 9865748 -132405696 + AluSx SINE Alu 1 301 -11 4956 239 35 22 chr9 9865748 9865974 -132405470 - L1P LINE L1 -3567 2579 2357 5688 168 23 57 chr9 9865974 9867916 -132403528 + L1PA16 LINE L1 3977 5888 -278 6298 36 0 3 chr9 9868125 9868881 -132402563 - L1PA5 LINE L1 -23 6131 5378 663 329 28 9 chr9 9868884 9869100 -132402344 - MIR SINE MIR -37 225 6 330 321 62 53 chr9 9869172 9869415 -132402029 + L1ME LINE L1 5104 5348 -798 497 281 84 38 chr9 9869475 9869795 -132401649 + L1ME LINE L1 5383 5717 -453 346 19 0 38 chr9 9871238 9871291 -132400153 + (CAAAA)n Simple_repeat Simple_repeat 5 55 0 584 303 188 0 chr9 9871721 9871929 -132399515 + MIR SINE MIR 2 248 -14 706 253 84 5 chr9 9872058 9872248 -132399196 - MIR SINE MIR 0 262 58 22 0 0 0 chr9 9872347 9872369 -132399075 + AT_rich Low_complexity Low_complexity 1 22 0 215 224 0 15 chr9 9872842 9872909 -132398535 + GA-rich Low_complexity Low_complexity 3 68 0 222 307 121 7 chr9 9872931 9873071 -132398373 - MIR SINE MIR -10 252 97 5154 156 20 3 chr9 9873509 9874683 -132396761 - L1PA16 LINE L1 -105 6061 4868 861 86 0 0 chr9 9874747 9874864 -132396580 - L1PA8 LINE L1 0 6172 6056 2253 113 0 0 chr9 9875164 9875464 -132395980 + AluSq SINE Alu 1 300 -13 243 258 32 0 chr9 9875671 9875733 -132395711 - MIR SINE MIR -48 160 96 210 118 0 0 chr9 9876137 9876171 -132395273 + (TA)n Simple_repeat Simple_repeat 2 35 0 240 211 184 28 chr9 9876172 9876281 -132395163 - L1ME4a LINE L1 -196 5925 5800 195 306 65 0 chr9 9876606 9876668 -132394776 + L2 LINE L2 3246 3311 -2 237 367 176 27 chr9 9877236 9877828 -132393616 + L2 LINE L2 2225 2904 -410 216 351 0 14 chr9 9878717 9878791 -132392653 + L2 LINE L2 3236 3308 -5 234 270 79 0 chr9 9878839 9878902 -132392542 - MER91A DNA MER1_type -19 177 110 4299 199 38 27 chr9 9879653 9880857 -132390587 + L1MA9 LINE L1 5057 6274 -38 211 163 20 41 chr9 9882053 9882102 -132389342 + MIR SINE MIR 158 205 -57 207 286 0 0 chr9 9882891 9882954 -132388490 + A-rich Low_complexity Low_complexity 1 63 0 1459 164 52 31 chr9 9883874 9884160 -132387284 - AluJo SINE Alu -20 292 1 200 325 75 0 chr9 9884179 9884259 -132387185 - MIR SINE MIR -73 189 104 23 78 0 0 chr9 9884531 9884582 -132386862 + AT_rich Low_complexity Low_complexity 1 51 0 24 0 0 0 chr9 9884777 9884801 -132386643 + AT_rich Low_complexity Low_complexity 1 24 0 337 313 121 16 chr9 9886652 9886908 -132384536 - L1ME4a LINE L1 -1 6120 5838 252 262 141 53 chr9 9886972 9887178 -132384266 - L1ME4a LINE L1 -386 5735 5512 21 0 0 0 chr9 9887517 9887538 -132383906 + AT_rich Low_complexity Low_complexity 1 21 0 208 306 0 40 chr9 9888292 9888416 -132383028 + GA-rich Low_complexity Low_complexity 2 120 0 3043 140 30 4 chr9 9889425 9889967 -132381477 - L1MA4 LINE L1 -1 6299 5744 3457 144 33 33 chr9 9890824 9891283 -132380161 + MER39 LTR ERV1 75 536 -171 2101 125 0 13 chr9 9891283 9891588 -132379856 + AluSx SINE Alu 1 301 -11 3457 144 33 33 chr9 9891588 9891761 -132379683 + MER39 LTR ERV1 535 707 0 448 308 96 0 chr9 9893547 9893703 -132377741 + MIR SINE MIR 36 206 -56 21 36 0 0 chr9 9895451 9895479 -132375965 + AT_rich Low_complexity Low_complexity 1 28 0 549 215 55 6 chr9 9895546 9895709 -132375735 + L1MC5 LINE L1 7610 7780 -181 2468 223 18 38 chr9 9896324 9896864 -132374580 + L1ME1 LINE L1 5508 6034 -132 1731 175 42 28 chr9 9896864 9897224 -132374220 - MLT1A1 LTR MaLR 0 365 1 2468 223 18 38 chr9 9897224 9897350 -132374094 + L1ME1 LINE L1 6034 6161 -5 233 314 29 9 chr9 9897449 9897554 -132373890 - L1ME LINE L1 -305 5816 5710 14884 130 14 15 chr9 9897566 9899986 -132371458 + Tigger1 DNA MER2_type 1 2417 -1 250 306 117 9 chr9 9901496 9901607 -132369837 - L2 LINE L2 0 3313 3191 302 301 24 57 chr9 9901673 9901796 -132369648 - MIR SINE MIR -108 154 36 358 279 39 3 chr9 9903247 9903381 -132368063 - MER63 DNA MER1_type 0 1061 692 29 47 0 0 chr9 9904644 9904687 -132366757 + AT_rich Low_complexity Low_complexity 1 43 0 258 368 26 13 chr9 9905611 9905766 -132365678 + MIR SINE MIR 106 262 0 26 50 0 0 chr9 9906351 9906391 -132365053 + AT_rich Low_complexity Low_complexity 1 40 0 26 0 0 0 chr9 9907417 9907443 -132364001 + AT_rich Low_complexity Low_complexity 1 26 0 26 0 0 0 chr9 9907809 9907835 -132363609 + AT_rich Low_complexity Low_complexity 1 26 0 362 266 156 41 chr9 9907931 9908149 -132363295 - HAL1 LINE L1 -577 1930 1688 21 0 0 0 chr9 9908168 9908189 -132363255 + AT_rich Low_complexity Low_complexity 1 21 0 867 39 0 0 chr9 9908278 9908382 -132363062 - L1PA3 LINE L1 -3 6152 6049 2209 64 7 0 chr9 9908558 9908890 -132362554 - AluY SINE Alu 0 334 1 249 33 0 0 chr9 9909770 9909800 -132361644 + (TTTTA)n Simple_repeat Simple_repeat 1 30 0 508 117 0 0 chr9 9909800 9909877 -132361567 - L1PA10 LINE L1 -21 6147 6071 790 283 81 25 chr9 9910735 9911181 -132360263 + LTR33 LTR ERVL 33 519 -2 24 53 0 0 chr9 9911308 9911346 -132360098 + AT_rich Low_complexity Low_complexity 1 38 0 2102 224 77 37 chr9 9912192 9912727 -132358717 + MLT1E LTR MaLR 1 556 -37 195 69 0 0 chr9 9914543 9914572 -132356872 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 264 299 0 0 chr9 9915288 9915355 -132356089 + (TG)n Simple_repeat Simple_repeat 2 68 0 4184 79 2 7 chr9 9915510 9916067 -132355377 + MER41A LTR ERV1 1 554 0 382 314 106 5 chr9 9916663 9916870 -132354574 + MIR SINE MIR 2 229 -33 198 302 116 0 chr9 9917221 9917323 -132354121 - MIR SINE MIR -63 145 25 874 9 27 0 chr9 9919620 9919730 -132351714 + (GAAA)n Simple_repeat Simple_repeat 3 115 0 1948 139 0 3 chr9 9919790 9920077 -132351367 + AluSx SINE Alu 1 286 -26 24 0 0 0 chr9 9920097 9920121 -132351323 + AT_rich Low_complexity Low_complexity 1 24 0 618 248 19 36 chr9 9920331 9920599 -132350845 + L1MA10 LINE L1 5916 6333 -1 1017 305 102 4 chr9 9920687 9921139 -132350305 - L2 LINE L2 -601 2713 2218 285 354 49 18 chr9 9921140 9921304 -132350140 - L2 LINE L2 -2518 796 628 5908 153 42 52 chr9 9921567 9922286 -132349158 + Tigger3b DNA MER2_type 1 703 -2325 1746 69 0 0 chr9 9922286 9922519 -132348925 + L1PA8 LINE L1 5938 6170 -2 5908 153 42 52 chr9 9922519 9923043 -132348401 + Tigger3b DNA MER2_type 703 1231 0 227 294 46 28 chr9 9923424 9923533 -132347911 + MIR SINE MIR 123 233 -29 1399 175 33 17 chr9 9923909 9924223 -132347221 - L1PA16 LINE L1 -9 6165 5813 851 284 99 49 chr9 9924355 9925175 -132346269 - L1ME4a LINE L1 -3 6118 5258 641 310 94 53 chr9 9926240 9926756 -132344688 - L2 LINE L2 0 3313 2784 219 290 32 16 chr9 9928969 9929031 -132342413 - L2 LINE L2 -10 3262 3200 1204 141 101 52 chr9 9929323 9929629 -132341815 + MER33 DNA MER1_type 1 321 -3 22 0 0 0 chr9 9929861 9929883 -132341561 + AT_rich Low_complexity Low_complexity 1 22 0 288 0 0 0 chr9 9930642 9930674 -132340770 + (T)n Simple_repeat Simple_repeat 1 32 0 229 299 15 0 chr9 9931578 9931645 -132339799 + L2 LINE L2 3242 3309 -4 1554 146 32 0 chr9 9931650 9931897 -132339547 - Tigger3(Golem) DNA MER2_type 0 3037 2783 560 250 25 0 chr9 9931898 9932018 -132339426 - Tigger3(Golem) DNA MER2_type -2889 140 18 190 229 71 0 chr9 9932197 9932267 -132339177 - L2 LINE L2 -227 3045 2971 338 280 80 40 chr9 9933071 9933221 -132338223 + MIR SINE MIR 51 206 -56 374 316 52 11 chr9 9933614 9933788 -132337656 - MIR3 SINE MIR -6 202 22 246 235 15 15 chr9 9934027 9934095 -132337349 + CT-rich Low_complexity Low_complexity 2 69 0 402 280 21 39 chr9 9934685 9934842 -132336602 + MIR SINE MIR 39 191 -71 583 235 166 18 chr9 9935005 9935222 -132336222 + MIR SINE MIR 12 260 -2 264 276 15 104 chr9 9935416 9935550 -132335894 + L2 LINE L2 3150 3271 -1 2936 203 23 38 chr9 9935569 9936259 -132335185 + MER67C LTR ERV1 1 680 -30 22 0 0 0 chr9 9936572 9936594 -132334850 + AT_rich Low_complexity Low_complexity 1 22 0 1194 165 21 25 chr9 9936770 9937012 -132334432 + L1MC3 LINE L1 7480 7720 -65 487 270 17 0 chr9 9937551 9937666 -132333778 - MIR3 SINE MIR -9 199 83 278 321 98 9 chr9 9938247 9938359 -132333085 + MIR SINE MIR 24 145 -63 25 0 0 0 chr9 9938389 9938414 -132333030 + AT_rich Low_complexity Low_complexity 1 25 0 2151 106 3 7 chr9 9938923 9939224 -132332220 - AluSq SINE Alu -12 301 2 26 0 0 0 chr9 9939231 9939257 -132332187 + AT_rich Low_complexity Low_complexity 1 26 0 894 197 45 40 chr9 9939817 9940040 -132331404 + MER58A DNA MER1_type 1 224 0 191 263 0 0 chr9 9940377 9940415 -132331029 - MIR SINE MIR -115 147 110 315 248 179 81 chr9 9940422 9940656 -132330788 - MIR SINE MIR 0 262 6 23 33 0 0 chr9 9941523 9941553 -132329891 + AT_rich Low_complexity Low_complexity 1 30 0 2654 88 0 0 chr9 9941575 9941937 -132329507 - L1PA13 LINE L1 -2 6161 5800 235 319 219 12 chr9 9942061 9942221 -132329223 - MIR3 SINE MIR -11 197 5 559 322 79 59 chr9 9942357 9942901 -132328543 - MLT1K LTR MaLR -29 559 5 219 69 0 0 chr9 9942965 9942994 -132328450 + (T)n Simple_repeat Simple_repeat 1 29 0 458 288 165 76 chr9 9943110 9943516 -132327928 + LTR67 LTR ERVL 101 542 -15 1865 152 0 0 chr9 9943981 9944343 -132327101 + AluSx SINE Alu 1 362 0 540 272 17 29 chr9 9946974 9947147 -132324297 - MER58B DNA MER1_type -1 340 170 6470 135 61 9 chr9 9947147 9949318 -132322126 + L1MA2 LINE L1 4014 6304 0 245 189 0 0 chr9 9949639 9949676 -132321768 - MER105 DNA DNA -162 42 6 258 310 37 53 chr9 9950362 9950554 -132320890 + MIR SINE MIR 27 212 -50 1122 252 94 3 chr9 9950840 9951126 -132320318 + Tigger7 DNA MER2_type 1 312 -2175 * 1253 148 5 0 chr9 9951115 9951324 -132320120 + Tigger7 DNA MER2_type 2365 2574 -13 22 35 0 0 chr9 9951513 9951542 -132319902 + AT_rich Low_complexity Low_complexity 1 29 0 27 29 0 0 chr9 9951577 9951611 -132319833 + AT_rich Low_complexity Low_complexity 1 34 0 1871 170 19 32 chr9 9952330 9952700 -132318744 - MLT1A1 LTR MaLR 0 365 1 222 368 0 0 chr9 9953558 9953634 -132317810 + MIR SINE MIR 1 76 -186 243 103 0 0 chr9 9953742 9953781 -132317663 + (ATG)n Simple_repeat Simple_repeat 1 39 0 629 205 21 52 chr9 9953891 9954064 -132317380 + MLT1C LTR MaLR 311 467 0 392 291 7 61 chr9 9954456 9954604 -132316840 - MIR SINE MIR -31 231 92 243 355 40 24 chr9 9955039 9955163 -132316281 - L2 LINE L2 -1 3271 3146 452 301 63 10 chr9 9955373 9955579 -132315865 + L1ME LINE L1 5505 5724 -446 858 191 65 0 chr9 9955592 9955791 -132315653 + L1MA8 LINE L1 6075 6286 -5 442 273 9 0 chr9 9955800 9955910 -132315534 - MLT2D LTR ERVL -303 111 1 245 213 73 6 chr9 9956075 9956239 -132315205 + (TA)n Simple_repeat Simple_repeat 1 175 0 22 35 0 0 chr9 9957151 9957180 -132314264 + AT_rich Low_complexity Low_complexity 1 29 0 274 267 0 0 chr9 9957665 9957725 -132313719 - MIR3 SINE MIR -7 201 142 2595 23 7 3 chr9 9958806 9959116 -132312328 - AluY SINE Alu 0 311 1 22 35 0 0 chr9 9960027 9960056 -132311388 + AT_rich Low_complexity Low_complexity 1 29 0 1038 273 122 35 chr9 9960078 9961077 -132310367 + L1ME3A LINE L1 4272 5357 -789 764 263 72 65 chr9 9961203 9961621 -132309823 + L1ME3A LINE L1 5743 6163 -7 339 136 23 11 chr9 9962886 9962974 -132308470 + (TCTA)n Simple_repeat Simple_repeat 4 92 0 434 345 20 35 chr9 9963452 9963655 -132307789 + MIR3 SINE MIR 9 208 0 305 303 22 11 chr9 9963936 9964025 -132307419 + L2 LINE L2 3219 3308 -5 997 293 83 34 chr9 9965388 9966069 -132305375 - L2 LINE L2 -4 3309 2577 305 340 25 31 chr9 9966218 9966380 -132305064 + MIR SINE MIR 102 262 0 663 307 45 22 chr9 9966424 9966825 -132304619 - L1M4 LINE L1 -2383 3763 3354 1098 249 78 80 chr9 9966831 9967305 -132304139 + MLT1D LTR MaLR 3 475 -30 1750 129 52 4 chr9 9967324 9967628 -132303816 + AluSp SINE Alu 1 317 0 3314 210 28 41 chr9 9967989 9968465 -132302979 - L1MD2 LINE L1 -1 6358 5883 288 327 51 37 chr9 9968465 9968899 -132302545 - L1PA8A LINE L1 -232 5899 5460 1943 139 3 0 chr9 9968979 9969273 -132302171 - AluSc SINE Alu -14 295 1 23 0 0 0 chr9 9970962 9970985 -132300459 + AT_rich Low_complexity Low_complexity 1 23 0 975 168 5 59 chr9 9971283 9971486 -132299958 - AluJo SINE Alu -28 284 93 1566 214 64 120 chr9 9971529 9972225 -132299219 + MLT1E1 LTR MaLR 1 650 -4 378 0 0 0 chr9 9972644 9972686 -132298758 + (CA)n Simple_repeat Simple_repeat 2 43 0 308 343 7 21 chr9 9972953 9973096 -132298348 - MIR SINE MIR -12 250 110 229 273 18 0 chr9 9973552 9973607 -132297837 - L2 LINE L2 -8 3305 3250 2018 189 112 5 chr9 9973745 9974163 -132297281 + MLT2C2 LTR ERVL 2 464 0 327 237 119 25 chr9 9974298 9974416 -132297028 + MIR SINE MIR 121 249 -13 22 0 0 0 chr9 9974946 9974968 -132296476 + AT_rich Low_complexity Low_complexity 1 22 0 1085 87 6 6 chr9 9974968 9975167 -132296277 - L1M LINE L1 -743 5403 5214 1507 106 16 8 chr9 9975514 9975759 -132295685 - L1MA3 LINE L1 0 6305 6059 6765 58 84 0 chr9 9975776 9976762 -132294682 - L1PA5 LINE L1 -2 6152 5146 5231 105 8 19 chr9 9976771 9977652 -132293792 - L1MA3 LINE L1 -257 6048 5179 618 260 78 39 chr9 9978973 9979204 -132292240 - LTR16A LTR ERVL -6 444 205 463 113 72 10 chr9 9979204 9979301 -132292143 - L1MA5A LINE L1 -1 6296 6194 321 176 29 0 chr9 9979301 9979369 -132292075 - L1MA5A LINE L1 -57 6240 6171 * 2945 148 47 9 chr9 9979343 9979983 -132291461 - L1MA5A LINE L1 -46 6251 5548 243 298 80 16 chr9 9980542 9980674 -132290770 - MIR SINE MIR -61 147 2 539 258 91 45 chr9 9980797 9981018 -132290426 - MIR SINE MIR -27 235 5 8082 99 3 6 chr9 9981099 9982294 -132289150 - L1PA7 LINE L1 -2718 3428 2237 3782 109 16 0 chr9 9982295 9982864 -132288580 + L1PA7 LINE L1 3444 4021 -2125 9206 96 4 3 chr9 9982865 9984942 -132286502 + L1PA7 LINE L1 4075 6153 -1 22 0 0 0 chr9 9987711 9987733 -132283711 + AT_rich Low_complexity Low_complexity 1 22 0 223 315 77 31 chr9 9987984 9988114 -132283330 - MIR SINE MIR -41 221 86 2208 121 16 0 chr9 9988257 9988564 -132282880 - AluSx SINE Alu 0 312 1 2155 115 26 0 chr9 9988688 9988992 -132282452 + AluSx SINE Alu 1 312 0 648 223 141 15 chr9 9989167 9989373 -132282071 + MIR SINE MIR 28 259 -3 254 208 0 0 chr9 9989598 9989645 -132281799 - MER58A DNA MER1_type -17 207 161 475 255 57 0 chr9 9989645 9989751 -132281693 - MER58A DNA MER1_type 0 113 2 182 333 118 11 chr9 9989824 9989917 -132281527 + MIR3 SINE MIR 83 185 -23 2804 135 30 4 chr9 9990310 9990806 -132280638 - L1MA4 LINE L1 0 6300 5792 228 184 184 0 chr9 9991964 9992013 -132279431 + L2 LINE L2 3209 3266 -6 5312 255 87 36 chr9 9993178 9994561 -132276883 + L1MEc LINE L1 2197 3507 -2708 3002 112 18 22 chr9 9994561 9995063 -132276381 + L1PB2 LINE L1 5651 6150 -1 5312 255 87 36 chr9 9995063 9995126 -132276318 + L1MEc LINE L1 3507 3565 -2650 191 35 0 35 chr9 9995126 9995155 -132276289 + (CAA)n Simple_repeat Simple_repeat 2 29 0 5312 255 87 36 chr9 9995155 9995814 -132275630 + L1MEc LINE L1 3565 4402 -1813 468 198 23 0 chr9 9995922 9996008 -132275436 - AluJ/FLAM SINE Alu -222 90 3 2998 197 68 16 chr9 9996024 9996731 -132274713 + L1MA9 LINE L1 5531 6274 -38 316 247 0 0 chr9 9996975 9997052 -132274392 - L1MC4 LINE L1 -4 8038 7962 475 278 22 28 chr9 9997385 9997565 -132273879 + Charlie8 DNA MER1_type 85 263 -2154 2152 86 0 7 chr9 9997785 9998065 -132273379 - AluY SINE Alu -6 305 28 1060 200 48 0 chr9 9998112 9998342 -132273102 + LTR40a LTR ERVL 1 241 -278 38 51 0 0 chr9 9998408 9998467 -132272977 + AT_rich Low_complexity Low_complexity 1 59 0 201 194 0 56 chr9 9998643 9998674 -132272770 + T-rich Low_complexity Low_complexity 5 36 -36 1740 136 31 0 chr9 9998674 9998931 -132272513 - AluSx SINE Alu -47 265 1 201 194 0 56 chr9 9998931 9998971 -132272473 + T-rich Low_complexity Low_complexity 36 72 0 332 354 69 33 chr9 9999075 9999437 -132272007 + L1ME3A LINE L1 5515 5889 -275 180 68 45 23 chr9 10001544 10001588 -132269856 + A-rich Low_complexity Low_complexity 1 45 0 202 98 24 49 chr9 10003198 10003239 -132268205 + (CAAAAA)n Simple_repeat Simple_repeat 2 41 0 1748 165 0 13 chr9 10004077 10004386 -132267058 + AluJb SINE Alu 1 305 -7 1223 221 67 45 chr9 10004477 10004808 -132266636 - MER58B DNA MER1_type -3 338 1 300 389 32 11 chr9 10005486 10005671 -132265773 - MIR3 SINE MIR -13 195 7 22 35 0 0 chr9 10006666 10006695 -132264749 + AT_rich Low_complexity Low_complexity 1 29 0 326 306 191 25 chr9 10006696 10006895 -132264549 - MIR SINE MIR 0 262 31 207 0 0 0 chr9 10006991 10007014 -132264430 + (A)n Simple_repeat Simple_repeat 1 23 0 505 276 39 111 chr9 10008762 10009121 -132262323 - MLT1I LTR MaLR 0 409 77 329 328 102 16 chr9 10009717 10009903 -132261541 + MIR SINE MIR 13 214 -48 919 180 51 6 chr9 10010651 10010829 -132260615 + MER5A DNA MER1_type 1 186 -3 310 373 108 52 chr9 10011119 10011157 -132260287 - L2 LINE L2 -24 3248 3214 811 232 45 58 chr9 10011157 10011381 -132260063 + MER58A DNA MER1_type 4 224 0 310 373 108 52 chr9 10011381 10011629 -132259815 - L2 LINE L2 -58 3214 2946 1690 178 3 35 chr9 10013339 10013653 -132257791 - AluJo SINE Alu -8 304 1 3538 154 27 109 chr9 10015695 10016591 -132254853 + L1PB3 LINE L1 5330 6151 -3 2463 109 8 31 chr9 10016611 10016996 -132254448 + L1PB3 LINE L1 5770 6145 -9 247 291 76 0 chr9 10017269 10017348 -132254096 + L2 LINE L2 3227 3311 -2 508 247 16 70 chr9 10018273 10018459 -132252985 - MER69A DNA AcHobo -1 176 1 2021 104 35 3 chr9 10019915 10020202 -132251242 - AluSx SINE Alu -16 296 1 400 198 31 0 chr9 10020267 10020363 -132251081 + L1MA4A LINE L1 6182 6280 -23 347 183 0 118 chr9 10020506 10020599 -132250845 - MER103 DNA DNA -36 130 49 371 335 59 18 chr9 10020984 10021154 -132250290 - MER5B DNA MER1_type -1 177 1 478 319 12 0 chr9 10021281 10021441 -132250003 - MIR SINE MIR -2 260 99 3671 129 13 13 chr9 10021605 10022208 -132249236 + L1PB1 LINE L1 5546 6148 -3 192 40 0 0 chr9 10023382 10023407 -132248037 + (TTG)n Simple_repeat Simple_repeat 2 26 0 365 318 82 29 chr9 10025837 10026007 -132245437 + L2 LINE L2 3088 3266 -6 715 343 73 27 chr9 10026055 10026662 -132244782 - L2 LINE L2 -8 3264 2628 3827 178 36 99 chr9 10026762 10027361 -132244083 - MER6 DNA MER2_type 0 865 343 255 103 0 0 chr9 10027361 10027400 -132244044 + (CA)n Simple_repeat Simple_repeat 1 39 0 3827 178 36 99 chr9 10027400 10027723 -132243721 - MER6 DNA MER2_type -522 343 1 329 325 124 47 chr9 10027748 10028175 -132243269 - L2 LINE L2 -708 2606 2147 21 0 0 0 chr9 10028564 10028585 -132242859 + AT_rich Low_complexity Low_complexity 1 21 0 220 306 0 0 chr9 10028685 10028747 -132242697 + (CA)n Simple_repeat Simple_repeat 2 63 0 2089 93 18 0 chr9 10029486 10029785 -132241659 + AluSq SINE Alu 1 304 0 577 256 231 0 chr9 10030216 10030411 -132241033 + MIR SINE MIR 6 245 -17 2244 70 0 7 chr9 10032376 10032687 -132238757 - AluY SINE Alu 0 309 1 677 255 292 11 chr9 10034318 10034434 -132237010 + L2 LINE L2 2319 2401 -913 2831 16 0 3 chr9 10034434 10034748 -132236696 - AluYb8 SINE Alu -2 316 4 677 255 292 11 chr9 10034748 10035011 -132236433 + L2 LINE L2 2401 2805 -509 446 245 8 97 chr9 10035025 10035262 -132236182 + L2 LINE L2 3077 3292 -21 229 296 0 0 chr9 10036362 10036416 -132235028 + (CATA)n Simple_repeat Simple_repeat 3 56 0 23 54 0 0 chr9 10037598 10037635 -132233809 + AT_rich Low_complexity Low_complexity 1 37 0 182 375 48 10 chr9 10037782 10037886 -132233558 + MIR3 SINE MIR 69 176 -32 227 327 39 10 chr9 10038339 10038443 -132233001 - MIR SINE MIR -62 146 40 250 206 135 92 chr9 10038626 10038767 -132232677 + MIR SINE MIR 116 262 0 1109 141 0 47 chr9 10039488 10039587 -132231857 - Tigger7 DNA MER2_type -7 2484 2397 1022 178 25 5 chr9 10039587 10039789 -132231655 + MER6B DNA MER2_type 2 207 -3 1109 141 0 47 chr9 10039789 10039881 -132231563 - Tigger7 DNA MER2_type -94 2397 2302 * 1544 192 49 13 chr9 10039877 10040184 -132231260 - Tigger7 DNA MER2_type -415 318 1 258 105 0 0 chr9 10040570 10040608 -132230836 + (A)n Simple_repeat Simple_repeat 1 38 0 2563 44 0 0 chr9 10040960 10041256 -132230188 - AluY SINE Alu -15 296 1 403 278 85 40 chr9 10041285 10041461 -132229983 + MLT1J1 LTR MaLR 36 219 -227 245 225 0 56 chr9 10041472 10041632 -132229812 + CT-rich Low_complexity Low_complexity 2 152 0 342 310 83 7 chr9 10041662 10041807 -132229637 + MLT1J2 LTR MaLR 290 445 -5 350 186 40 16 chr9 10042055 10042179 -132229265 + (TA)n Simple_repeat Simple_repeat 1 127 0 336 312 188 10 chr9 10043164 10043579 -132227865 + LTR33 LTR ERVL 1 517 -4 317 341 115 1 chr9 10043587 10043761 -132227683 - MIR3 SINE MIR -63 145 3 2064 133 7 3 chr9 10044850 10045159 -132226285 + AluSg SINE Alu 1 310 0 24 32 0 0 chr9 10046623 10046654 -132224790 + AT_rich Low_complexity Low_complexity 1 31 0 483 315 33 5 chr9 10046693 10046877 -132224567 + MER5A DNA MER1_type 1 189 0 206 238 63 48 chr9 10046960 10047023 -132224421 - MIR3 SINE MIR -18 190 127 32 26 0 0 chr9 10047731 10047770 -132223674 + AT_rich Low_complexity Low_complexity 1 39 0 1376 162 59 15 chr9 10047862 10048133 -132223311 + MER58B DNA MER1_type 56 338 -3 531 218 40 114 chr9 10048163 10048365 -132223079 + MER5A DNA MER1_type 2 188 -1 21 0 0 0 chr9 10049019 10049040 -132222404 + AT_rich Low_complexity Low_complexity 1 21 0 657 307 49 25 chr9 10049449 10049693 -132221751 + MIR SINE MIR 13 262 0 310 286 71 36 chr9 10050667 10050779 -132220665 - L2 LINE L2 -8 3264 3149 227 86 54 65 chr9 10050785 10050878 -132220566 + (TA)n Simple_repeat Simple_repeat 1 92 0 1736 133 66 0 chr9 10050878 10051149 -132220295 - AluSx SINE Alu -23 289 1 362 266 98 90 chr9 10054298 10054647 -132216797 + MLT1I LTR MaLR 19 373 -36 962 245 80 52 chr9 10054647 10055010 -132216434 - MLT1A2 LTR MaLR -1 373 1 362 266 98 90 chr9 10055010 10055048 -132216396 + MLT1I LTR MaLR 373 409 0 43 47 0 0 chr9 10056799 10056863 -132214581 + AT_rich Low_complexity Low_complexity 1 64 0 10150 177 27 30 chr9 10057469 10058084 -132213360 + L1MA7 LINE L1 2949 3565 -2726 3985 97 30 15 chr9 10058084 10058685 -132212759 - L1PA11 LINE L1 0 6174 5565 10150 177 27 30 chr9 10058685 10058710 -132212734 + L1MA7 LINE L1 3565 3589 -2702 2139 94 0 0 chr9 10058710 10059002 -132212442 + AluSg SINE Alu 14 305 0 10150 177 27 30 chr9 10059002 10061711 -132209733 + L1MA7 LINE L1 3589 6289 -2 25 31 0 0 chr9 10061888 10061920 -132209524 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr9 10062234 10062255 -132209189 + AT_rich Low_complexity Low_complexity 1 21 0 1439 346 95 39 chr9 10062568 10064344 -132207100 + L2 LINE L2 1167 3049 -223 1957 211 67 43 chr9 10064447 10064940 -132206504 - MLT1D LTR MaLR 0 505 1 308 287 23 0 chr9 10064980 10065067 -132206377 + L2 LINE L2 3225 3313 0 2101 109 7 13 chr9 10065109 10065229 -132206215 + AluSx SINE Alu 1 120 -192 342 0 0 0 chr9 10065229 10065267 -132206177 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 2101 109 7 13 chr9 10065267 10065448 -132205996 + AluSx SINE Alu 120 300 -12 261 376 105 0 chr9 10065482 10065615 -132205829 - L2 LINE L2 -4 3268 3122 310 349 11 0 chr9 10067418 10067529 -132203915 - MIR SINE MIR -78 130 14 288 0 0 0 chr9 10067706 10067738 -132203706 + (TG)n Simple_repeat Simple_repeat 1 32 0 2184 133 0 0 chr9 10067850 10068159 -132203285 + AluSp SINE Alu 1 309 -4 930 227 72 0 chr9 10068418 10068625 -132202819 + MER58A DNA MER1_type 2 223 -1 23 0 0 0 chr9 10068780 10068803 -132202641 + AT_rich Low_complexity Low_complexity 1 23 0 36 0 0 0 chr9 10069246 10069282 -132202162 + AT_rich Low_complexity Low_complexity 1 36 0 36 40 0 0 chr9 10071702 10071752 -132199692 + AT_rich Low_complexity Low_complexity 1 50 0 24 32 0 0 chr9 10072092 10072123 -132199321 + AT_rich Low_complexity Low_complexity 1 31 0 194 343 0 29 chr9 10072562 10072632 -132198812 + L2 LINE L2 3246 3313 0 851 275 115 50 chr9 10073058 10073608 -132197836 + L2 LINE L2 2457 3039 -274 1802 154 11 76 chr9 10073776 10074145 -132197299 - MER7A DNA MER2_type -2 344 2 195 167 146 0 chr9 10074233 10074281 -132197163 + L2 LINE L2 3180 3234 -38 363 301 89 14 chr9 10074551 10074697 -132196747 + L2 LINE L2 3152 3308 -5 27 29 0 0 chr9 10075136 10075170 -132196274 + AT_rich Low_complexity Low_complexity 1 34 0 1768 201 22 3 chr9 10075220 10075578 -132195866 + MLT1A1 LTR MaLR 1 365 0 2373 97 0 7 chr9 10075718 10076028 -132195416 + AluSg SINE Alu 1 308 -2 1779 203 39 21 chr9 10076894 10077283 -132194161 + MSTD LTR MaLR 1 396 0 2179 124 18 47 chr9 10077388 10077774 -132193670 - THE1C LTR MaLR 0 375 1 515 284 88 42 chr9 10078229 10078468 -132192976 + L3 LINE CR1 998 1247 -330 202 265 0 0 chr9 10078474 10078523 -132192921 + L3 LINE CR1 1363 1411 -166 354 202 18 18 chr9 10078665 10078774 -132192670 + CT-rich Low_complexity Low_complexity 4 112 0 291 321 80 15 chr9 10078812 10078949 -132192495 + MIR3 SINE MIR 52 197 -11 189 315 117 63 chr9 10079933 10080044 -132191400 - L2 LINE L2 -3 3269 3153 407 254 238 22 chr9 10080158 10080343 -132191101 + MIR SINE MIR 28 252 -10 4467 38 0 0 chr9 10080451 10080985 -132190459 + L1PA4 LINE L1 5619 6152 -3 244 333 14 0 chr9 10081165 10081237 -132190207 + L3 LINE CR1 411 483 -1094 227 319 138 26 chr9 10081392 10081508 -132189936 + MIR3 SINE MIR 11 139 -69 201 129 0 0 chr9 10081548 10081579 -132189865 + MIR SINE MIR 220 250 -12 21 36 0 0 chr9 10081847 10081875 -132189569 + AT_rich Low_complexity Low_complexity 1 28 0 527 289 96 23 chr9 10081880 10082098 -132189346 - MIR SINE MIR -4 258 25 210 314 0 0 chr9 10083707 10083758 -132187686 - L2 LINE L2 -85 3187 3137 203 272 111 12 chr9 10083782 10083863 -132187581 - MIR SINE MIR -74 188 100 378 200 156 0 chr9 10084622 10084712 -132186732 + MLT1J2 LTR MaLR 1 104 -346 280 250 39 86 chr9 10084906 10085034 -132186410 + MLT1J2 LTR MaLR 311 432 -18 199 359 10 78 chr9 10085051 10085154 -132186290 + L2 LINE L2 3141 3236 -36 1026 213 0 5 chr9 10086791 10086979 -132184465 + AluJb SINE Alu 87 273 -39 498 46 0 0 chr9 10086979 10087044 -132184400 + (TC)n Simple_repeat Simple_repeat 1 65 0 26 0 0 0 chr9 10087365 10087391 -132184053 + AT_rich Low_complexity Low_complexity 1 26 0 204 200 0 0 chr9 10087951 10087996 -132183448 + CT-rich Low_complexity Low_complexity 1 45 0 186 103 0 0 chr9 10088185 10088214 -132183230 + (TG)n Simple_repeat Simple_repeat 2 30 0 1012 233 90 23 chr9 10088315 10088903 -132182541 - L1ME3A LINE L1 -20 6150 5490 329 0 24 0 chr9 10089186 10089227 -132182217 + (TG)n Simple_repeat Simple_repeat 1 42 0 476 335 44 0 chr9 10089609 10089767 -132181677 - MIR3 SINE MIR -7 201 37 403 383 47 34 chr9 10089821 10090119 -132181325 + L2 LINE L2 2970 3271 -1 558 258 140 6 chr9 10090205 10090383 -132181061 + MLT1I LTR MaLR 17 218 -191 1780 216 39 23 chr9 10090434 10090623 -132180821 + MSTD LTR MaLR 2 187 -209 2173 70 138 0 chr9 10090623 10090935 -132180509 + THE1A LTR MaLR 1 355 0 1780 216 39 23 chr9 10090935 10091134 -132180310 + MSTD LTR MaLR 187 396 0 384 306 37 0 chr9 10091135 10091243 -132180201 + MLT1I LTR MaLR 295 406 -3 225 213 16 0 chr9 10091244 10091305 -132180139 + MST-int LTR MaLR 1560 1621 -30 1284 231 61 112 chr9 10091332 10091930 -132179514 + MLT1F1 LTR MaLR 1 567 0 23 0 0 0 chr9 10092132 10092155 -132179289 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr9 10093524 10093550 -132177894 + AT_rich Low_complexity Low_complexity 1 26 0 7355 129 31 2 chr9 10093789 10094986 -132176458 - Tigger3b DNA MER2_type 0 1231 1 227 162 0 73 chr9 10095377 10095445 -132175999 + L1MC4 LINE L1 6641 6703 -1339 * 266 228 127 0 chr9 10095413 10095492 -132175952 + L1MC4 LINE L1 6614 6702 -1340 222 316 122 10 chr9 10096420 10096518 -132174926 + MIR SINE MIR 43 151 -57 503 350 9 27 chr9 10096884 10097107 -132174337 + MIR SINE MIR 31 249 -13 2590 207 42 10 chr9 10097165 10097760 -132173684 + MER90 LTR ERV1 1 614 0 2163 108 0 0 chr9 10097802 10098088 -132173356 - AluSx SINE Alu -26 286 1 180 200 0 0 chr9 10098163 10098198 -132173246 + L2 LINE L2 3238 3272 0 25 51 0 0 chr9 10100161 10100200 -132171244 + AT_rich Low_complexity Low_complexity 1 39 0 252 311 152 8 chr9 10100245 10100377 -132171067 + MIR SINE MIR 28 178 -84 243 307 84 58 chr9 10100503 10100728 -132170716 + MLT1K LTR MaLR 336 566 -22 326 270 165 23 chr9 10100826 10101001 -132170443 - MIR3 SINE MIR -11 251 26 836 122 0 0 chr9 10103491 10103606 -132167838 + AluSp/q SINE Alu 167 281 -32 264 30 0 0 chr9 10103608 10103641 -132167803 + (CA)n Simple_repeat Simple_repeat 2 34 0 719 294 54 67 chr9 10106121 10106810 -132164634 - L2 LINE L2 0 3313 2624 2023 157 45 42 chr9 10106812 10107353 -132164091 + MLT2A2 LTR ERVL 1 554 0 1132 310 27 10 chr9 10107353 10107766 -132163678 - L2 LINE L2 -688 2626 2207 1545 279 12 34 chr9 10107878 10108372 -132163072 + L1MC5 LINE L1 5453 5935 -1873 2325 69 16 0 chr9 10108413 10108719 -132162725 - AluY SINE Alu 0 311 1 1635 240 97 68 chr9 10108983 10109215 -132162229 + L1MC5 LINE L1 7008 7232 -729 2331 77 0 3 chr9 10109215 10109513 -132161931 - AluY SINE Alu -14 297 1 1635 240 97 68 chr9 10109513 10110159 -132161285 + L1MC5 LINE L1 7232 7911 -50 21 0 0 0 chr9 10110165 10110186 -132161258 + AT_rich Low_complexity Low_complexity 1 21 0 1984 225 89 7 chr9 10110189 10110647 -132160797 - LTR40a LTR ERVL -18 501 6 21 0 0 0 chr9 10110849 10110870 -132160574 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 10111336 10111357 -132160087 + AT_rich Low_complexity Low_complexity 1 21 0 228 86 0 0 chr9 10111477 10111512 -132159932 + (TG)n Simple_repeat Simple_repeat 2 36 0 631 344 27 19 chr9 10111605 10111861 -132159583 + MIR SINE MIR 4 261 -1 255 61 0 0 chr9 10111869 10111902 -132159542 + (TTCC)n Simple_repeat Simple_repeat 4 36 0 411 21 0 0 chr9 10111917 10111965 -132159479 + (CA)n Simple_repeat Simple_repeat 1 48 0 530 302 15 42 chr9 10112102 10112370 -132159074 - MIR SINE MIR 0 262 3 13443 83 2 5 chr9 10162588 10165331 -132106113 + L1PA7 LINE L1 3415 6152 -2 27434 64 4 12 chr9 10166123 10170636 -132100808 + L1PA6 LINE L1 1675 6148 -6 302 257 29 0 chr9 10170657 10170727 -132100717 - SATR1 Satellite Satellite -387 83 12 8788 41 0 0 chr9 10170830 10172712 -132098732 + L1PA3 LINE L1 4283 6152 -3 35399 44 1 4 chr9 10173661 10178016 -132093428 - L1P LINE L1 -1802 4344 2 1168 279 97 3 chr9 10178192 10178575 -132092869 + L2 LINE L2 2016 2434 -880 14569 126 14 5 chr9 10178770 10181159 -132090285 + L1P LINE L1 952 3360 -2786 2169 164 38 75 chr9 10181261 10181728 -132089716 - L1MC3 LINE L1 -709 7076 6630 3216 191 99 6 chr9 10181728 10182397 -132089047 - MER44D DNA MER2_type -2 603 1 2169 164 38 75 chr9 10182397 10182478 -132088966 - L1MC3 LINE L1 -1155 6630 6548 1087 235 45 79 chr9 10182505 10182909 -132088535 + MLT1B LTR MaLR 1 390 0 21 71 0 0 chr9 10182935 10182977 -132088467 + AT_rich Low_complexity Low_complexity 1 42 0 21 36 0 0 chr9 10183121 10183149 -132088295 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr9 10185672 10185693 -132085751 + AT_rich Low_complexity Low_complexity 1 21 0 374 223 96 0 chr9 10185947 10186041 -132085403 - MIR SINE MIR -28 234 132 210 281 35 0 chr9 10186076 10186133 -132085311 + L2 LINE L2 3214 3272 0 201 351 20 20 chr9 10186142 10186290 -132085154 - L2 LINE L2 -828 2486 2339 955 166 71 33 chr9 10187368 10187579 -132083865 + MER20 DNA MER1_type 1 219 0 463 348 80 26 chr9 10188178 10188517 -132082927 + L2 LINE L2 2620 2976 -338 1702 198 19 19 chr9 10188570 10188934 -132082510 + MLT1A1 LTR MaLR 2 365 0 380 324 0 9 chr9 10189056 10189167 -132082277 + L2 LINE L2 3143 3252 -20 21 0 0 0 chr9 10190474 10190495 -132080949 + AT_rich Low_complexity Low_complexity 1 21 0 222 37 0 0 chr9 10190686 10190713 -132080731 + (T)n Simple_repeat Simple_repeat 1 27 0 333 264 63 38 chr9 10192007 10192166 -132079278 - HAL1 LINE L1 -14 2493 2331 482 304 101 34 chr9 10192175 10192471 -132078973 - L2 LINE L2 0 3313 2998 749 281 83 112 chr9 10192486 10193442 -132078002 - HAL1 LINE L1 -1577 930 3 242 308 54 39 chr9 10193450 10193580 -132077864 - L2 LINE L2 -4 3268 3137 1185 210 60 111 chr9 10193695 10194128 -132077316 + MLT1C LTR MaLR 53 463 -4 2285 104 3 3 chr9 10194377 10194685 -132076759 + AluSx SINE Alu 1 308 -4 424 374 33 39 chr9 10195713 10196045 -132075399 + L2 LINE L2 2647 2976 -338 2158 106 0 0 chr9 10198731 10199060 -132072384 + AluSp SINE Alu 1 329 0 186 312 119 9 chr9 10199262 10199371 -132072073 - MIR SINE MIR -81 181 61 204 316 0 61 chr9 10200244 10200342 -132071102 - MIR SINE MIR -71 191 100 4613 167 37 7 chr9 10200490 10201327 -132070117 + MER6 DNA MER2_type 1 862 -3 244 322 0 35 chr9 10202675 10202762 -132068682 + L2 LINE L2 3188 3271 -1 216 0 0 0 chr9 10203929 10203953 -132067491 + (T)n Simple_repeat Simple_repeat 1 24 0 297 325 192 41 chr9 10205365 10205824 -132065620 + L2 LINE L2 2249 2776 -538 2223 107 10 3 chr9 10205985 10206293 -132065151 + AluSp SINE Alu 1 310 -3 230 156 0 0 chr9 10206298 10206343 -132065101 + A-rich Low_complexity Low_complexity 4 48 0 21 36 0 0 chr9 10208520 10208548 -132062896 + AT_rich Low_complexity Low_complexity 1 28 0 2112 113 7 0 chr9 10209369 10209662 -132061782 + AluSp SINE Alu 1 295 -18 561 267 85 0 chr9 10209793 10209958 -132061486 + MIR SINE MIR 72 250 -12 369 339 79 21 chr9 10210381 10210570 -132060874 - MIR SINE MIR -15 247 48 21 0 0 0 chr9 10211056 10211077 -132060367 + AT_rich Low_complexity Low_complexity 1 21 0 379 297 85 18 chr9 10211432 10211597 -132059847 - MIR SINE MIR -64 198 23 12718 59 0 1 chr9 10211791 10214183 -132057261 - L1PA6 LINE L1 -4 6150 3758 262 342 0 0 chr9 10214526 10214605 -132056839 - MIR SINE MIR -113 149 71 1680 76 22 0 chr9 10215900 10216125 -132055319 + MER30 DNA MER1_type 1 230 0 1903 161 3 3 chr9 10216721 10217032 -132054412 - AluSx SINE Alu 0 312 2 228 100 0 0 chr9 10217333 10217373 -132054071 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 311 48 48 16 chr9 10221451 10221514 -132049930 + (TA)n Simple_repeat Simple_repeat 1 65 0 221 377 9 38 chr9 10221565 10221671 -132049773 + MIR3 SINE MIR 4 106 -102 415 286 96 11 chr9 10222548 10222726 -132048718 + MIR SINE MIR 63 255 -7 216 111 0 0 chr9 10222730 10222766 -132048678 + (CAT)n Simple_repeat Simple_repeat 2 37 0 24 32 0 0 chr9 10223544 10223575 -132047869 + AT_rich Low_complexity Low_complexity 1 31 0 195 244 22 0 chr9 10223724 10223769 -132047675 - MIR3 SINE MIR -36 172 127 29 70 0 0 chr9 10226446 10226503 -132044941 + AT_rich Low_complexity Low_complexity 1 57 0 1676 76 0 4 chr9 10226682 10226907 -132044537 - L1PA7 LINE L1 -3 6151 5928 1992 72 0 34 chr9 10227183 10227448 -132043996 + AluY SINE Alu 1 256 -55 192 328 16 0 chr9 10227539 10227600 -132043844 + L2 LINE L2 3251 3312 -1 22 0 0 0 chr9 10229779 10229801 -132041643 + AT_rich Low_complexity Low_complexity 1 22 0 1967 153 0 3 chr9 10229801 10230096 -132041348 - AluSx SINE Alu -18 294 1 6097 50 11 27 chr9 10230698 10231515 -132039929 - L1PA7 LINE L1 0 6154 5351 2436 87 3 3 chr9 10232148 10232493 -132038951 + L1PA8 LINE L1 5826 6170 -2 38 39 0 0 chr9 10232730 10232782 -132038662 + AT_rich Low_complexity Low_complexity 1 52 0 27 49 0 0 chr9 10233215 10233256 -132038188 + AT_rich Low_complexity Low_complexity 1 41 0 528 316 26 74 chr9 10233620 10233889 -132037555 + MIR SINE MIR 7 262 0 2186 117 0 0 chr9 10234681 10234980 -132036464 - AluSq SINE Alu -14 299 1 675 255 0 13 chr9 10235010 10235163 -132036281 + AluJb SINE Alu 139 289 -23 294 167 0 0 chr9 10235292 10235352 -132036092 + (TA)n Simple_repeat Simple_repeat 1 60 0 188 188 0 0 chr9 10237138 10237170 -132034274 + L2 LINE L2 2705 2736 -578 348 344 110 0 chr9 10239738 10239901 -132031543 + MIR SINE MIR 11 191 -71 510 211 0 19 chr9 10239993 10240097 -132031347 - AluJ/FLAM SINE Alu -210 102 1 357 336 66 5 chr9 10240099 10240310 -132031134 - L1MC4a LINE L1 -1906 5902 5679 390 159 0 0 chr9 10240315 10240384 -132031060 + (TG)n Simple_repeat Simple_repeat 2 70 0 346 364 19 6 chr9 10241327 10241489 -132029955 - MIR3 SINE MIR 0 208 45 1468 243 98 17 chr9 10241727 10242310 -132029134 - MLT1E3 LTR MaLR 0 624 1 928 290 120 40 chr9 10242518 10243083 -132028361 - L2 LINE L2 -38 3275 2670 430 202 67 10 chr9 10243087 10243191 -132028253 - L1MA10 LINE L1 -58 6276 6167 3244 277 46 19 chr9 10243261 10244353 -132027091 - L2 LINE L2 -638 2676 1556 321 381 39 0 chr9 10244657 10244812 -132026632 + MIR3 SINE MIR 20 180 -28 23 0 0 0 chr9 10245692 10245715 -132025729 + AT_rich Low_complexity Low_complexity 1 23 0 181 316 82 20 chr9 10247782 10247880 -132023564 - L2 LINE L2 -5 3267 3164 890 181 102 0 chr9 10249510 10249715 -132021729 - L1MA4 LINE L1 0 6300 6075 225 299 52 10 chr9 10249823 10249920 -132021524 - L2 LINE L2 -13 3300 3200 21 0 0 0 chr9 10250276 10250297 -132021147 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 10251099 10251120 -132020324 + AT_rich Low_complexity Low_complexity 1 21 0 193 261 0 0 chr9 10251790 10251836 -132019608 - MIR SINE MIR -120 142 97 1117 293 103 41 chr9 10252257 10253088 -132018356 - L2 LINE L2 -43 3270 2392 371 325 52 13 chr9 10256157 10256311 -132015133 + MIR SINE MIR 47 206 -56 28898 32 1 1 chr9 10256750 10260879 -132010565 - L1PA4 LINE L1 -3 6152 1872 242 313 90 14 chr9 10260885 10261029 -132010415 - L1ME LINE L1 -484 5637 5483 514 294 0 0 chr9 10261132 10261258 -132010186 + MIR SINE MIR 4 129 -133 1431 227 135 33 chr9 10261368 10261826 -132009618 - MLT1D LTR MaLR 0 505 1 338 315 80 0 chr9 10261830 10261992 -132009452 - L1ME LINE L1 -813 5333 5159 216 97 0 0 chr9 10263059 10263090 -132008354 + (TG)n Simple_repeat Simple_repeat 2 32 0 2055 195 64 26 chr9 10263140 10263304 -132008140 + L1MB4 LINE L1 5660 5816 -364 2215 114 3 0 chr9 10263304 10263611 -132007833 + AluSg SINE Alu 1 308 -2 2055 195 64 26 chr9 10263611 10263957 -132007487 + L1MB4 LINE L1 5816 6179 -1 368 304 185 5 chr9 10265420 10265604 -132005840 - MIR SINE MIR 0 262 46 4482 214 73 10 chr9 10265899 10267184 -132004260 - L1MC2 LINE L1 -16 6608 5126 255 39 20 39 chr9 10267184 10267235 -132004209 + (TA)n Simple_repeat Simple_repeat 2 51 0 4482 214 73 10 chr9 10267235 10268198 -132003246 - L1MC2 LINE L1 -1498 5126 4225 2528 227 19 34 chr9 10268205 10268364 -132003080 - L1MC2 LINE L1 -3145 3281 3121 775 42 0 0 chr9 10268364 10268460 -132002984 - L1MA1 LINE L1 0 6302 6207 2528 227 19 34 chr9 10268460 10269347 -132002097 - L1MC2 LINE L1 -3305 3121 2252 1741 161 38 0 chr9 10269347 10269638 -132001806 - AluJb SINE Alu -8 304 3 261 145 0 0 chr9 10269660 10269722 -132001722 + (T)n Simple_repeat Simple_repeat 1 62 0 2123 215 6 18 chr9 10269756 10270263 -132001181 - L1 LINE L1 -1389 4757 4257 * 2835 187 69 11 chr9 10270262 10271032 -132000412 + L1MB1 LINE L1 5051 5882 -307 190 301 53 35 chr9 10271197 10271310 -132000134 + L2 LINE L2 3184 3298 -15 303 336 92 34 chr9 10271684 10271976 -131999468 - MLT1I LTR MaLR -2 407 99 369 0 0 0 chr9 10272331 10272372 -131999072 + (T)n Simple_repeat Simple_repeat 1 41 0 316 362 71 14 chr9 10273697 10273907 -131997537 - MIR SINE MIR -36 226 5 318 242 0 0 chr9 10275463 10275529 -131995915 - L1M4c LINE L1 -4713 1671 1606 947 130 0 43 chr9 10275674 10275836 -131995608 - LTR1 LTR ERV1 0 785 631 1895 129 57 9 chr9 10275863 10276385 -131995059 - LTR1 LTR ERV1 -146 639 1 322 257 14 0 chr9 10276451 10276521 -131994923 + MER94 DNA DNA 64 134 0 29 0 0 0 chr9 10276681 10276710 -131994734 + AT_rich Low_complexity Low_complexity 1 29 0 669 210 28 55 chr9 10277013 10277194 -131994250 + MIR SINE MIR 86 261 -1 2108 116 20 0 chr9 10277216 10277517 -131993927 + AluSp SINE Alu 1 307 -6 581 313 103 34 chr9 10277766 10278312 -131993132 - L2 LINE L2 -1 3312 2728 25 0 0 0 chr9 10278531 10278556 -131992888 + AT_rich Low_complexity Low_complexity 1 25 0 256 261 77 69 chr9 10278733 10278863 -131992581 + MIR SINE MIR 52 182 -80 1431 189 101 1 chr9 10280873 10281181 -131990263 + MER61B LTR ERV1 1 425 0 342 247 34 0 chr9 10281554 10281643 -131989801 + MLT1H LTR MaLR 458 549 0 467 313 92 5 chr9 10281645 10281840 -131989604 + MIR SINE MIR 49 260 -2 382 336 30 0 chr9 10282278 10282409 -131989035 + L2 LINE L2 3179 3313 0 668 282 116 0 chr9 10282435 10282651 -131988793 + MIR SINE MIR 21 261 -1 191 333 40 0 chr9 10282776 10282851 -131988593 + MER5B DNA MER1_type 1 78 -100 419 219 0 0 chr9 10283210 10283291 -131988153 + MER5A DNA MER1_type 4 84 -105 317 291 46 69 chr9 10283296 10283471 -131987973 - MER5B DNA MER1_type -1 177 7 397 306 140 6 chr9 10284277 10284434 -131987010 + MER5A DNA MER1_type 10 187 -2 276 186 0 0 chr9 10286068 10286127 -131985317 + CT-rich Low_complexity Low_complexity 1 59 0 25 31 0 0 chr9 10286683 10286715 -131984729 + AT_rich Low_complexity Low_complexity 1 32 0 2272 112 0 92 chr9 10287527 10287928 -131983516 + THE1B LTR MaLR 1 364 0 23 0 0 0 chr9 10289022 10289045 -131982399 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr9 10289116 10289144 -131982300 + AT_rich Low_complexity Low_complexity 1 28 0 192 217 0 0 chr9 10289257 10289303 -131982141 + (CATATA)n Simple_repeat Simple_repeat 5 50 0 2336 131 11 8 chr9 10289638 10290012 -131981432 + THE1C LTR MaLR 1 375 0 818 289 122 30 chr9 10290120 10290951 -131980493 + L1MEd LINE L1 43 1130 -4989 225 83 0 0 chr9 10290954 10290990 -131980454 + (A)n Simple_repeat Simple_repeat 1 36 0 1940 156 0 10 chr9 10290996 10291310 -131980134 + AluSx SINE Alu 2 312 0 213 39 0 0 chr9 10291397 10291423 -131980021 + (TC)n Simple_repeat Simple_repeat 1 26 0 35 24 0 0 chr9 10291651 10291693 -131979751 + AT_rich Low_complexity Low_complexity 1 42 0 1515 291 132 48 chr9 10291694 10292829 -131978615 - L2 LINE L2 -1 3312 2094 541 269 54 21 chr9 10294892 10295078 -131976366 + MIR SINE MIR 4 195 -67 662 295 49 16 chr9 10295109 10295414 -131976030 - L1ME3A LINE L1 -192 5978 5664 401 363 81 4 chr9 10295572 10295806 -131975638 + MIR SINE MIR 5 256 -6 232 343 0 0 chr9 10296747 10296820 -131974624 + MIR SINE MIR 175 247 -15 314 400 22 17 chr9 10297466 10297696 -131973748 + L1MEd LINE L1 561 791 -5328 204 40 0 0 chr9 10299029 10299054 -131972390 + (TG)n Simple_repeat Simple_repeat 2 26 0 357 218 40 50 chr9 10299890 10299991 -131971453 - MIR3 SINE MIR -32 176 77 183 80 0 0 chr9 10300122 10300147 -131971297 + (TTTTC)n Simple_repeat Simple_repeat 4 28 0 2862 9 0 0 chr9 10301085 10301401 -131970043 - AluYb8 SINE Alu -2 316 1 417 349 42 16 chr9 10301649 10301838 -131969606 + MIR SINE MIR 57 250 -12 211 394 55 0 chr9 10302715 10302842 -131968602 - L2 LINE L2 0 3272 3139 662 244 37 30 chr9 10302887 10303051 -131968393 + MER45A DNA AcHobo 4 168 -10 198 275 73 73 chr9 10303092 10303201 -131968243 - L2 LINE L2 -167 3146 3038 1751 173 0 0 chr9 10303202 10303491 -131967953 + AluSg SINE Alu 22 310 0 180 254 56 14 chr9 10303879 10303950 -131967494 - L2 LINE L2 -309 2963 2890 279 389 92 11 chr9 10304005 10304288 -131967156 + L2 LINE L2 2444 2749 -565 326 316 34 8 chr9 10304298 10304415 -131967029 + MIR SINE MIR 13 132 -130 199 325 70 13 chr9 10304499 10304656 -131966788 + L2 LINE L2 2764 2929 -385 296 248 91 33 chr9 10305716 10305837 -131965607 + MIR SINE MIR 97 224 -38 434 324 65 12 chr9 10306462 10306632 -131964812 + MIR SINE MIR 23 201 -61 333 0 0 0 chr9 10307116 10307153 -131964291 + (CA)n Simple_repeat Simple_repeat 2 38 0 25 0 0 0 chr9 10308012 10308037 -131963407 + AT_rich Low_complexity Low_complexity 1 25 0 304 301 109 43 chr9 10308488 10308764 -131962680 + L1ME4a LINE L1 5572 5865 -256 369 258 16 121 chr9 10308986 10309168 -131962276 - MER91B DNA MER1_type -27 163 1 29 0 0 0 chr9 10309327 10309356 -131962088 + AT_rich Low_complexity Low_complexity 1 29 0 189 266 31 0 chr9 10309766 10309830 -131961614 + L2 LINE L2 3236 3301 -12 216 200 0 53 chr9 10309917 10309992 -131961452 + A-rich Low_complexity Low_complexity 2 72 0 705 238 17 50 chr9 10310075 10310256 -131961188 - MIR SINE MIR -10 252 78 1263 207 120 20 chr9 10311167 10311504 -131959940 + MLT1A2 LTR MaLR 4 463 -4 482 327 45 11 chr9 10311541 10311917 -131959527 + L1MEd LINE L1 753 1141 -4978 665 261 125 0 chr9 10312115 10312299 -131959145 + LTR16A LTR ERVL 231 437 -13 346 246 115 4 chr9 10312680 10312815 -131958629 + L1 LINE L1 4217 4362 -1784 558 327 44 25 chr9 10312892 10313166 -131958278 + MLT1H LTR MaLR 72 305 -244 208 110 64 37 chr9 10313345 10313454 -131957990 + (TATAA)n Simple_repeat Simple_repeat 5 116 0 441 147 0 0 chr9 10313467 10313542 -131957902 - MADE1 DNA Mariner -5 75 1 15684 93 2 4 chr9 10313909 10316090 -131955354 + L1P LINE L1 1 2176 -3970 40103 71 3 2 chr9 10316234 10322403 -131949041 + L1PA5 LINE L1 1 6179 0 2159 168 10 22 chr9 10324605 10325022 -131946422 + L1 LINE L1 4419 4830 -1316 303 150 33 0 chr9 10325019 10325079 -131946365 + L1MA6 LINE L1 6230 6291 -9 * 214 169 31 15 chr9 10325144 10325209 -131946235 + (TTATA)n Simple_repeat Simple_repeat 4 69 0 1448 157 45 63 chr9 10325541 10325827 -131945617 + AluJo SINE Alu 1 281 -31 27 29 0 0 chr9 10326014 10326048 -131945396 + AT_rich Low_complexity Low_complexity 1 34 0 494 303 95 35 chr9 10326394 10326711 -131944733 + LTR16C LTR ERVL 156 491 0 23 0 0 0 chr9 10327797 10327820 -131943624 + AT_rich Low_complexity Low_complexity 1 23 0 1312 202 33 85 chr9 10328207 10328573 -131942871 - MLT1B LTR MaLR -42 348 2 588 276 13 0 chr9 10330089 10330245 -131941199 - MIR SINE MIR -53 209 52 23 0 0 0 chr9 10330595 10330618 -131940826 + AT_rich Low_complexity Low_complexity 1 23 0 941 317 50 12 chr9 10331170 10331574 -131939870 - LTR16A LTR ERVL -31 419 1 2077 13 0 0 chr9 10332842 10333077 -131938367 + 7SLRNA srpRNA srpRNA 1 235 -85 254 313 10 20 chr9 10333677 10333776 -131937668 + (TATG)n Simple_repeat Simple_repeat 1 98 0 180 0 0 0 chr9 10334025 10334045 -131937399 + (TAAA)n Simple_repeat Simple_repeat 4 23 0 188 329 0 94 chr9 10334050 10334135 -131937309 - L3b LINE CR1 -24 1559 1483 934 306 122 31 chr9 10334157 10334666 -131936778 + MLT1H1 LTR MaLR 1 555 0 2643 96 8 8 chr9 10336209 10336584 -131934860 - THE1C LTR MaLR 0 375 1 285 245 10 69 chr9 10337340 10337442 -131934002 - L2 LINE L2 -9 3304 3209 5766 109 7 9 chr9 10337442 10338457 -131932987 + L1PA13 LINE L1 5136 6149 -14 931 337 117 10 chr9 10338569 10338961 -131932483 - L2 LINE L2 -340 2974 2541 181 403 16 23 chr9 10338989 10339023 -131932421 - L2 LINE L2 0 3313 3280 1608 146 52 78 chr9 10339023 10339406 -131932038 + THE1C LTR MaLR 1 373 -2 181 403 16 23 chr9 10339406 10339500 -131931944 - L2 LINE L2 -33 3280 3186 4824 110 19 3 chr9 10340519 10340878 -131930566 - L1PB2 LINE L1 0 6151 5799 381 22 0 0 chr9 10340878 10340924 -131930520 + (TG)n Simple_repeat Simple_repeat 2 47 0 4824 110 19 3 chr9 10340924 10341290 -131930154 - L1PB2 LINE L1 -352 5799 5414 417 70 0 0 chr9 10341721 10341778 -131929666 + (CA)n Simple_repeat Simple_repeat 2 58 0 22 70 0 0 chr9 10342112 10342155 -131929289 + AT_rich Low_complexity Low_complexity 1 43 0 250 326 58 29 chr9 10342262 10342642 -131928802 + L1MEd LINE L1 698 1088 -5117 374 339 34 21 chr9 10342797 10343122 -131928322 + L1MEd LINE L1 1316 1644 -4752 26 30 0 0 chr9 10344170 10344203 -131927241 + AT_rich Low_complexity Low_complexity 1 33 0 834 260 10 0 chr9 10344969 10345177 -131926267 + MER63A DNA MER1_type 1 210 0 248 297 54 0 chr9 10345524 10345598 -131925846 - L2 LINE L2 -7 3265 3188 276 100 0 0 chr9 10345613 10345653 -131925791 + (TA)n Simple_repeat Simple_repeat 2 41 0 34 0 0 0 chr9 10346059 10346093 -131925351 + AT_rich Low_complexity Low_complexity 1 34 0 25 51 0 0 chr9 10346170 10346209 -131925235 + AT_rich Low_complexity Low_complexity 1 39 0 612 346 35 4 chr9 10347407 10347661 -131923783 - MIR SINE MIR 0 262 1 1476 206 7 0 chr9 10349453 10349740 -131921704 + AluJb SINE Alu 12 300 -12 481 229 0 9 chr9 10349917 10350026 -131921418 + L1PB4 LINE L1 744 851 -5353 * 5544 196 24 4 chr9 10350016 10352103 -131919341 + L1PB4 LINE L1 4073 6197 -16 329 345 131 35 chr9 10352618 10352931 -131918513 + L2 LINE L2 2966 3308 -5 234 294 0 11 chr9 10354143 10354235 -131917209 + GA-rich Low_complexity Low_complexity 1 91 0 778 217 30 30 chr9 10354417 10354514 -131916930 - L1PA16 LINE L1 0 6166 6070 2777 174 8 4 chr9 10354514 10355009 -131916435 + LOR1a LTR ERV1 1 497 0 778 217 30 30 chr9 10355009 10355114 -131916330 - L1PA16 LINE L1 -95 6071 5964 1575 203 3 3 chr9 10356809 10357095 -131914349 + AluJb SINE Alu 1 286 -26 22 0 0 0 chr9 10357474 10357496 -131913948 + AT_rich Low_complexity Low_complexity 1 22 0 313 299 59 21 chr9 10357613 10357800 -131913644 - L1M4 LINE L1 -1430 4716 4523 216 0 0 0 chr9 10357996 10358020 -131913424 + (T)n Simple_repeat Simple_repeat 1 24 0 2062 131 3 0 chr9 10358088 10358393 -131913051 + AluSx SINE Alu 1 306 -6 429 296 107 67 chr9 10358535 10359089 -131912355 - L1M4 LINE L1 -2229 3917 3342 303 290 137 48 chr9 10359293 10359607 -131911837 - L1M4 LINE L1 -3037 3109 2768 915 172 90 37 chr9 10359816 10360084 -131911360 + MER33 DNA MER1_type 27 308 -16 2801 16 0 0 chr9 10363087 10363400 -131908044 - AluYb8 SINE Alu -5 313 1 5291 188 36 12 chr9 10363733 10365856 -131905588 - L1MA5 LINE L1 0 6300 4126 365 318 68 21 chr9 10366342 10366534 -131904910 - MLT1K LTR MaLR -34 554 354 250 373 47 18 chr9 10366590 10366759 -131904685 - MER5A DNA MER1_type -1 188 15 185 274 129 65 chr9 10366992 10367116 -131904328 - MIR SINE MIR -61 147 16 2095 127 7 0 chr9 10367623 10367931 -131903513 - AluSp SINE Alu -3 310 1 413 257 203 7 chr9 10369307 10369455 -131901989 - MIR SINE MIR -12 250 74 22 70 0 0 chr9 10369580 10369623 -131901821 + AT_rich Low_complexity Low_complexity 1 43 0 258 32 0 0 chr9 10370318 10370349 -131901095 + (CA)n Simple_repeat Simple_repeat 1 31 0 205 330 32 0 chr9 10370450 10370544 -131900900 - MIR SINE MIR -71 191 95 266 0 0 29 chr9 10370696 10370731 -131900713 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 277 318 70 31 chr9 10371903 10372032 -131899412 + MIR SINE MIR 68 201 -61 291 54 0 0 chr9 10372059 10372096 -131899348 + (ATG)n Simple_repeat Simple_repeat 3 39 0 216 361 60 8 chr9 10372253 10372386 -131899058 + MIR SINE MIR 51 190 -72 926 185 58 62 chr9 10372417 10372693 -131898751 - ORSL DNA AcHobo 0 275 1 382 149 0 0 chr9 10373336 10373403 -131898041 - L1MC2 LINE L1 -2 6342 6276 23 78 0 0 chr9 10375094 10375145 -131896299 + AT_rich Low_complexity Low_complexity 1 51 0 923 253 54 54 chr9 10375155 10375527 -131895917 + L1ME3 LINE L1 5789 6160 -2 736 312 40 8 chr9 10375531 10375781 -131895663 - MIR SINE MIR -3 259 2 2313 110 0 0 chr9 10376838 10377148 -131894296 + AluSg SINE Alu 1 310 0 202 338 0 0 chr9 10377475 10377549 -131893895 + T-rich Low_complexity Low_complexity 3 76 0 265 323 136 39 chr9 10377665 10377922 -131893522 + L2 LINE L2 3008 3289 -24 32 26 0 0 chr9 10377960 10377999 -131893445 + AT_rich Low_complexity Low_complexity 1 39 0 4058 42 0 0 chr9 10378027 10378523 -131892921 - L1PA4 LINE L1 0 6155 5660 22 0 0 0 chr9 10378645 10378667 -131892777 + AT_rich Low_complexity Low_complexity 1 22 0 11090 215 70 31 chr9 10379561 10383641 -131887803 + L1MB3 LINE L1 6 4246 -2136 2578 188 19 0 chr9 10383641 10384119 -131887325 + Tigger1 DNA MER2_type 1 487 -1931 5610 152 25 34 chr9 10384121 10384476 -131886968 + Tigger1 DNA MER2_type 1123 1479 -939 2503 72 0 0 chr9 10384476 10384783 -131886661 + AluY SINE Alu 3 309 -2 5610 152 25 34 chr9 10384783 10385498 -131885946 + Tigger1 DNA MER2_type 1479 2184 -234 2514 230 95 7 chr9 10385498 10386185 -131885259 + L1MB3 LINE L1 4539 5285 -1097 2317 189 111 34 chr9 10386377 10387103 -131884341 + LTR28 LTR ERV1 204 1020 0 4723 188 33 19 chr9 10387108 10387532 -131883912 + L1MB3 LINE L1 5300 5717 -702 193 0 94 0 chr9 10387532 10387564 -131883880 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4723 188 33 19 chr9 10387564 10388257 -131883187 + L1MB3 LINE L1 5717 6419 0 364 312 19 0 chr9 10388825 10388963 -131882481 + MIR3 SINE MIR 63 205 -3 267 179 0 0 chr9 10389912 10389979 -131881465 + CT-rich Low_complexity Low_complexity 2 68 0 315 187 0 112 chr9 10391428 10391562 -131879882 + L1 LINE L1 2889 3007 -3139 2441 175 63 15 chr9 10391577 10392102 -131879342 - L1MA10 LINE L1 -2 6332 5783 1973 262 50 7 chr9 10392100 10392681 -131878763 + L1ME2 LINE L1 5530 6135 -29 * 2094 146 14 97 chr9 10393280 10393765 -131877679 + MER65A LTR ERV1 1 445 0 1776 228 33 4 chr9 10394093 10394545 -131876899 + L1 LINE L1 3959 4423 -1723 388 271 83 31 chr9 10394641 10394833 -131876611 + LTR16B LTR ERVL 263 464 0 21 0 0 0 chr9 10395660 10395681 -131875763 + AT_rich Low_complexity Low_complexity 1 21 0 200 279 73 78 chr9 10395812 10395991 -131875453 + L3b LINE CR1 1234 1411 -172 262 279 82 74 chr9 10396551 10397049 -131874395 + L1ME4a LINE L1 5619 6120 -1 22 35 0 0 chr9 10398655 10398684 -131872760 + AT_rich Low_complexity Low_complexity 1 29 0 2829 154 2 21 chr9 10398900 10399381 -131872063 + LOR1a LTR ERV1 26 497 0 28 29 0 0 chr9 10399412 10399447 -131871997 + AT_rich Low_complexity Low_complexity 1 35 0 262 270 52 17 chr9 10399478 10399593 -131871851 + LTR33A LTR ERVL 1 119 -404 241 281 78 66 chr9 10399756 10399923 -131871521 + LTR33A LTR ERVL 346 514 -9 207 305 0 0 chr9 10399977 10400036 -131871408 + L2 LINE L2 3209 3267 -5 21 0 0 0 chr9 10400385 10400406 -131871038 + AT_rich Low_complexity Low_complexity 1 21 0 27 49 0 0 chr9 10405287 10405328 -131866116 + AT_rich Low_complexity Low_complexity 1 41 0 1958 135 0 0 chr9 10406135 10406445 -131864999 - AluSc SINE Alu 0 318 9 829 269 89 27 chr9 10408603 10409243 -131862201 + L1M4 LINE L1 2749 3428 -2718 564 281 26 6 chr9 10409232 10409631 -131861813 + L1M4 LINE L1 4399 4844 -1302 * 204 154 0 0 chr9 10409883 10409935 -131861509 + (TA)n Simple_repeat Simple_repeat 1 52 0 276 258 314 8 chr9 10410537 10410661 -131860783 + MER5A DNA MER1_type 24 185 -4 2261 105 3 0 chr9 10411493 10411797 -131859647 + AluSp SINE Alu 1 305 -8 25 31 0 0 chr9 10412288 10412320 -131859124 + AT_rich Low_complexity Low_complexity 1 32 0 23 33 0 0 chr9 10412748 10412778 -131858666 + AT_rich Low_complexity Low_complexity 1 30 0 180 0 0 0 chr9 10413063 10413083 -131858361 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 310 283 112 52 chr9 10413210 10413443 -131858001 + L2 LINE L2 1869 2115 -1199 363 256 101 23 chr9 10413503 10413632 -131857812 + MLT1K LTR MaLR 83 221 -367 322 268 41 32 chr9 10413715 10413838 -131857606 + MLT1K LTR MaLR 352 475 -113 226 250 0 54 chr9 10413873 10413929 -131857515 + polypyrimidine Low_complexity Low_complexity 4 56 0 2281 54 7 0 chr9 10414455 10414770 -131856674 - AluY SINE Alu 0 319 3 289 315 20 0 chr9 10415471 10415591 -131855853 - L1ME3 LINE L1 -53 6109 5988 711 281 109 19 chr9 10415674 10416041 -131855403 - L1ME3 LINE L1 -216 5954 5555 27 0 0 0 chr9 10416051 10416078 -131855366 + AT_rich Low_complexity Low_complexity 1 27 0 22 0 0 0 chr9 10416503 10416525 -131854919 + AT_rich Low_complexity Low_complexity 1 22 0 988 322 49 16 chr9 10417553 10418041 -131853403 + L1MEc LINE L1 454 957 -5764 432 315 70 32 chr9 10418112 10418483 -131852961 + L1MEc LINE L1 1521 1905 -4635 * 1088 207 66 68 chr9 10418474 10418544 -131852900 + L1ME1 LINE L1 5022 5091 -1075 2146 110 20 3 chr9 10418544 10418845 -131852599 - AluSg SINE Alu 0 310 5 1088 207 66 68 chr9 10418845 10419436 -131852008 + L1ME1 LINE L1 5091 5678 -488 266 259 9 19 chr9 10419438 10419546 -131851898 + (TA)n Simple_repeat Simple_repeat 1 107 0 2824 175 39 3 chr9 10419571 10420182 -131851262 + L1MA4A LINE L1 2934 3566 -2580 3012 153 26 34 chr9 10420184 10420797 -131850647 + L1MA4A LINE L1 5685 6292 -11 353 222 0 44 chr9 10420814 10420904 -131850540 + L1ME1 LINE L1 5774 5859 -307 1143 203 64 4 chr9 10421170 10421436 -131850008 - L1MB5 LINE L1 -305 5869 5588 204 256 26 0 chr9 10421509 10421587 -131849857 + (TA)n Simple_repeat Simple_repeat 1 80 0 207 284 49 78 chr9 10424510 10424612 -131846832 - L2 LINE L2 -18 3295 3197 209 320 73 87 chr9 10426737 10426943 -131844501 - MIR SINE MIR -7 255 53 23 33 0 0 chr9 10427490 10427520 -131843924 + AT_rich Low_complexity Low_complexity 1 30 0 744 322 107 30 chr9 10428526 10429020 -131842424 - L2 LINE L2 0 3313 2778 275 356 34 0 chr9 10429862 10429980 -131841464 - L2 LINE L2 -2 3311 3190 250 364 28 14 chr9 10430316 10430459 -131840985 - L2 LINE L2 -1855 1459 1315 265 252 39 79 chr9 10430474 10430601 -131840843 + L1ME2 LINE L1 18 139 -6284 320 287 89 63 chr9 10430871 10431108 -131840336 + MLT1H1 LTR MaLR 187 429 -126 659 249 51 68 chr9 10431514 10431908 -131839536 + L1ME2 LINE L1 3825 4211 -2730 * 2302 232 75 48 chr9 10431900 10432991 -131838453 + L1ME2 LINE L1 5738 6854 -105 23 68 0 0 chr9 10433071 10433115 -131838329 + AT_rich Low_complexity Low_complexity 1 44 0 194 0 0 37 chr9 10433309 10433336 -131838108 + (CAAAAA)n Simple_repeat Simple_repeat 3 28 0 291 273 140 13 chr9 10434092 10434242 -131837202 + MARNA DNA Mariner 91 259 -327 28 0 0 0 chr9 10434377 10434405 -131837039 + AT_rich Low_complexity Low_complexity 1 28 0 3235 176 70 16 chr9 10434599 10435243 -131836201 - L1MC1 LINE L1 -13 6320 5642 2102 227 44 70 chr9 10435247 10435974 -131835470 - L1MC1 LINE L1 -1312 4834 4127 202 214 45 135 chr9 10436307 10436396 -131835048 - MIR SINE MIR 0 262 182 1705 167 48 80 chr9 10436547 10437007 -131834437 + MER65A LTR ERV1 1 445 0 368 298 86 20 chr9 10437069 10437220 -131834224 + MIR SINE MIR 96 256 -6 1294 279 57 46 chr9 10437351 10437414 -131834030 + L1ME LINE L1 2041 2102 -4839 252 0 0 0 chr9 10437414 10437442 -131834002 + (CA)n Simple_repeat Simple_repeat 1 28 0 1294 279 57 46 chr9 10437442 10438015 -131833429 + L1ME LINE L1 2102 2667 -4274 1545 112 40 0 chr9 10438015 10438239 -131833205 - AluSg/x SINE Alu -2 308 76 1294 279 57 46 chr9 10438239 10438676 -131832768 + L1ME LINE L1 2667 3491 -3450 855 221 51 72 chr9 10438674 10439159 -131832285 + L1ME LINE L1 5835 6306 -653 * 384 196 88 10 chr9 10439161 10439263 -131832181 + L1ME LINE L1 6389 6498 -461 * 931 255 39 23 chr9 10439259 10439565 -131831879 + L1MC/D LINE L1 4837 5147 -999 1944 164 112 0 chr9 10439587 10439952 -131831492 + MLT2C2 LTR ERVL 10 415 -49 338 156 66 42 chr9 10440007 10440174 -131831270 + (TATATG)n Simple_repeat Simple_repeat 2 172 0 275 133 0 0 chr9 10440182 10440227 -131831217 + MLT2C2 LTR ERVL 459 503 -12 1630 212 66 22 chr9 10440238 10440783 -131830661 + L1MC/D LINE L1 5146 5709 -650 349 239 116 29 chr9 10441669 10441807 -131829637 - MIR SINE MIR -21 241 92 22 56 0 0 chr9 10442654 10442690 -131828754 + AT_rich Low_complexity Low_complexity 1 36 0 345 301 47 31 chr9 10442946 10443139 -131828305 - MIR SINE MIR -10 252 57 2553 127 72 2 chr9 10445609 10446026 -131825418 - Tigger2 DNA MER2_type 0 2718 2273 372 157 29 14 chr9 10446013 10446083 -131825361 - Tigger2 DNA MER2_type -2646 72 2 * 3537 165 46 16 chr9 10446736 10447400 -131824044 + MER4D LTR ERV1 1 684 -219 3188 127 47 61 chr9 10447400 10448023 -131823421 - LTR18B LTR ERVL 0 614 1 3071 191 5 29 chr9 10448224 10448780 -131822664 - HERVL18 LTR ERVL -2556 3491 2949 728 196 23 0 chr9 10448776 10448909 -131822535 - HERVL18 LTR ERVL -2963 3084 2949 * 1191 177 54 6 chr9 10448905 10449183 -131822261 - HERVL18 LTR ERVL -2963 3084 2718 715 160 8 6 chr9 10449180 10449408 -131822036 - HERVL18 LTR ERVL -3595 2452 2119 * 1056 205 22 7 chr9 10449407 10449774 -131821670 - HERVL18 LTR ERVL -4237 1810 1375 1497 205 14 4 chr9 10449973 10450251 -131821193 - HERVL18 LTR ERVL -5760 287 7 2961 132 52 55 chr9 10450263 10450879 -131820565 - LTR18B LTR ERVL 0 614 1 1204 178 9 13 chr9 10450879 10451104 -131820340 + MER4D LTR ERV1 680 903 0 1690 299 92 46 chr9 10451366 10452630 -131818814 + L2 LINE L2 2005 3311 -2 195 312 143 26 chr9 10453542 10453696 -131817748 - MER5A DNA MER1_type 0 189 18 221 359 46 38 chr9 10453761 10453892 -131817552 - MER5B DNA MER1_type -25 153 22 23 0 0 0 chr9 10454051 10454074 -131817370 + AT_rich Low_complexity Low_complexity 1 23 0 307 390 0 8 chr9 10454074 10454192 -131817252 + MER5A DNA MER1_type 73 189 0 261 0 0 0 chr9 10454502 10454531 -131816913 + (T)n Simple_repeat Simple_repeat 1 29 0 180 375 29 39 chr9 10455963 10456067 -131815377 - MIR SINE MIR -140 122 20 21 0 0 0 chr9 10456648 10456669 -131814775 + AT_rich Low_complexity Low_complexity 1 21 0 222 284 27 14 chr9 10456710 10456784 -131814660 - L2 LINE L2 -194 3078 3004 674 324 110 55 chr9 10457256 10457839 -131813605 + MLT1L LTR MaLR 1 615 0 187 373 28 28 chr9 10457841 10457983 -131813461 - MIR3 SINE MIR -6 202 61 265 263 53 13 chr9 10458497 10458573 -131812871 + L2 LINE L2 3189 3267 -5 183 80 0 0 chr9 10459814 10459839 -131811605 + (TTA)n Simple_repeat Simple_repeat 2 26 0 24 103 0 0 chr9 10461373 10461460 -131809984 + AT_rich Low_complexity Low_complexity 1 87 0 305 257 29 48 chr9 10461552 10461758 -131809686 + L1ME3A LINE L1 5009 5210 -936 519 252 0 8 chr9 10461787 10461906 -131809538 + MER63 DNA MER1_type 1 744 -92 230 129 12 71 chr9 10462156 10462241 -131809203 + L1MC4 LINE L1 6624 6703 -1339 269 239 14 0 chr9 10462242 10462313 -131809131 + (TA)n Simple_repeat Simple_repeat 1 72 0 1018 251 103 68 chr9 10462315 10463153 -131808291 + L1ME3A LINE L1 5282 6160 -2 24 32 0 0 chr9 10463192 10463223 -131808221 + AT_rich Low_complexity Low_complexity 1 31 0 22 56 0 0 chr9 10463625 10463661 -131807783 + AT_rich Low_complexity Low_complexity 1 36 0 2281 97 7 3 chr9 10465056 10465414 -131806030 + AluSg SINE Alu 1 359 0 1820 170 6 3 chr9 10466899 10467210 -131804234 + AluJb SINE Alu 1 312 0 2266 118 0 0 chr9 10467383 10467689 -131803755 + AluSx SINE Alu 3 308 -4 27 0 0 0 chr9 10468162 10468189 -131803255 + AT_rich Low_complexity Low_complexity 1 27 0 303 321 290 0 chr9 10468497 10468690 -131802754 - MIR SINE MIR -2 260 12 560 300 58 5 chr9 10468852 10469042 -131802402 - MIR SINE MIR -10 252 53 1235 107 54 29 chr9 10469050 10469255 -131802189 - L1PA10 LINE L1 -4 6164 5955 4700 158 21 37 chr9 10469325 10470156 -131801288 - L1PB4 LINE L1 -5 6151 5334 2177 126 0 0 chr9 10470156 10470466 -131800978 - AluSx SINE Alu -2 310 1 4700 158 21 37 chr9 10470466 10470624 -131800820 - L1PB4 LINE L1 -822 5334 5175 22 0 0 0 chr9 10470787 10470809 -131800635 + AT_rich Low_complexity Low_complexity 1 22 0 212 315 33 33 chr9 10471465 10471557 -131799887 - L2 LINE L2 0 3272 3181 639 309 116 56 chr9 10471731 10472145 -131799299 + MLT1J LTR MaLR 1 439 -72 346 227 13 8 chr9 10472147 10472278 -131799166 + L1MB7 LINE L1 5951 6184 0 285 194 30 45 chr9 10473623 10473690 -131797754 - MER5A DNA MER1_type 0 189 124 253 204 19 0 chr9 10473700 10473754 -131797690 + MER5A DNA MER1_type 55 109 -80 189 0 0 0 chr9 10473977 10473998 -131797446 + (TTA)n Simple_repeat Simple_repeat 2 22 0 315 341 66 57 chr9 10474922 10475288 -131796156 + L2 LINE L2 2132 2500 -814 1777 206 12 38 chr9 10475326 10475797 -131795647 - MER89 LTR ERV1 -2 557 1 220 274 32 16 chr9 10476757 10476819 -131794625 + MIR SINE MIR 48 110 -152 22 56 0 0 chr9 10476828 10476864 -131794580 + AT_rich Low_complexity Low_complexity 1 36 0 456 323 37 1 chr9 10476909 10477082 -131794362 - MIR SINE MIR -44 218 45 430 194 291 15 chr9 10477196 10477330 -131794114 - MER5A DNA MER1_type 0 189 19 2133 163 50 5 chr9 10477330 10477766 -131793678 + L1MA4A LINE L1 5848 6303 0 22 35 0 0 chr9 10478938 10478967 -131792477 + AT_rich Low_complexity Low_complexity 1 29 0 403 213 131 0 chr9 10479283 10479405 -131792039 - MER104 DNA Tc2 -13 167 30 269 346 23 0 chr9 10479461 10479591 -131791853 + L1ME LINE L1 5492 5624 -497 378 333 29 0 chr9 10479882 10479987 -131791457 + L2 LINE L2 3193 3300 -13 24 0 0 0 chr9 10480221 10480245 -131791199 + AT_rich Low_complexity Low_complexity 1 24 0 2213 226 51 36 chr9 10480608 10481218 -131790226 + MLT1E2 LTR MaLR 1 619 -7 1954 145 54 0 chr9 10481293 10481644 -131789800 - L1MA6 LINE L1 0 6300 5931 221 148 0 19 chr9 10481923 10481977 -131789467 + (CAAAA)n Simple_repeat Simple_repeat 3 55 0 2067 153 0 0 chr9 10482384 10482692 -131788752 + AluSx SINE Alu 5 312 0 308 122 23 0 chr9 10482692 10482777 -131788667 + GA-rich Low_complexity Low_complexity 1 86 0 203 0 37 0 chr9 10482809 10482836 -131788608 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 191 122 0 24 chr9 10482968 10483009 -131788435 + (TATATG)n Simple_repeat Simple_repeat 2 41 0 2065 218 14 6 chr9 10483883 10484375 -131787069 - L1PB1 LINE L1 -988 5158 4663 * 3041 100 0 10 chr9 10484372 10484895 -131786549 + L1PB1 LINE L1 5164 5682 -469 442 118 39 33 chr9 10484895 10485048 -131786396 + (TA)n Simple_repeat Simple_repeat 1 154 0 297 51 0 0 chr9 10485079 10485156 -131786288 + (TG)n Simple_repeat Simple_repeat 1 116 0 297 51 0 0 chr9 10485156 10485195 -131786249 + (TG)n Simple_repeat Simple_repeat 2 40 0 2301 132 3 5 chr9 10485201 10485571 -131785873 + L1PB1 LINE L1 5783 6151 0 23 0 0 0 chr9 10485571 10485594 -131785850 + AT_rich Low_complexity Low_complexity 1 23 0 33 0 0 0 chr9 10488092 10488125 -131783319 + AT_rich Low_complexity Low_complexity 1 33 0 220 320 43 38 chr9 10488393 10488509 -131782935 + MIR SINE MIR 1 124 -84 286 344 57 53 chr9 10488775 10489022 -131782422 - MIR SINE MIR 0 262 15 300 274 37 53 chr9 10489099 10489289 -131782155 - L1MEd LINE L1 -4955 1164 978 353 304 85 36 chr9 10489354 10489601 -131781843 + L1M4 LINE L1 4317 4575 -1571 198 71 0 0 chr9 10490016 10490044 -131781400 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 357 24 0 0 chr9 10490729 10490771 -131780673 + (TG)n Simple_repeat Simple_repeat 1 42 0 399 257 91 67 chr9 10491283 10491493 -131779951 - L2 LINE L2 -2 3311 3097 26 0 0 0 chr9 10491973 10491999 -131779445 + AT_rich Low_complexity Low_complexity 1 26 0 245 309 49 0 chr9 10492110 10492191 -131779253 + MIR SINE MIR 118 202 -60 1753 191 15 9 chr9 10493067 10493402 -131778042 + MER1B DNA MER1_type 1 337 0 528 105 42 0 chr9 10493460 10493555 -131777889 - L1PA15 LINE L1 -2 6163 6065 28 0 0 0 chr9 10493598 10493626 -131777818 + AT_rich Low_complexity Low_complexity 1 28 0 224 380 96 0 chr9 10495167 10495333 -131776111 - L2 LINE L2 -527 2787 2606 360 0 0 0 chr9 10496583 10496623 -131774821 + (A)n Simple_repeat Simple_repeat 1 40 0 275 319 69 9 chr9 10496966 10497082 -131774362 - MIR SINE MIR -18 244 122 363 338 58 0 chr9 10497716 10497855 -131773589 + MIR SINE MIR 116 262 0 191 122 0 24 chr9 10498985 10499026 -131772418 + (CAAAAA)n Simple_repeat Simple_repeat 2 41 0 2066 137 0 0 chr9 10499073 10499379 -131772065 - AluSx SINE Alu -5 307 2 313 287 75 46 chr9 10499519 10499693 -131771751 + MER102b DNA MER1_type 154 332 -9 300 279 68 14 chr9 10500351 10500498 -131770946 - L1ME4a LINE L1 -3 6118 5964 183 163 0 70 chr9 10500534 10500577 -131770867 + L2 LINE L2 3234 3273 -40 404 261 179 31 chr9 10500599 10500856 -131770588 - L1ME4a LINE L1 -170 5951 5657 400 236 250 0 chr9 10502580 10502720 -131768724 - MER5A DNA MER1_type 0 189 15 396 59 0 0 chr9 10502740 10502791 -131768653 + (TA)n Simple_repeat Simple_repeat 1 51 0 306 282 254 7 chr9 10503302 10503444 -131768000 + MER5A DNA MER1_type 13 189 0 258 281 83 10 chr9 10503611 10503707 -131767737 + MIR SINE MIR 151 253 -9 252 217 17 0 chr9 10503713 10503773 -131767671 + (TA)n Simple_repeat Simple_repeat 2 62 0 617 176 111 33 chr9 10504481 10504634 -131766810 + LTR41 LTR ERVL 1 165 -608 272 203 0 17 chr9 10505192 10505251 -131766193 + LTR41 LTR ERVL 710 767 -6 456 297 104 25 chr9 10505341 10505543 -131765901 - MIR SINE MIR -44 218 1 547 220 68 17 chr9 10505780 10505957 -131765487 - MER53 DNA DNA -3 186 1 873 129 14 14 chr9 10506314 10506461 -131764983 + MER41B LTR ERV1 392 538 -97 673 98 20 0 chr9 10506461 10506563 -131764881 - L1P LINE L1 -3327 2819 2716 308 203 9 59 chr9 10506565 10506675 -131764769 + MER41A LTR ERV1 403 474 -12 216 339 57 42 chr9 10507119 10507311 -131764133 - L2 LINE L2 -234 3038 2844 2595 48 0 0 chr9 10507408 10507719 -131763725 + AluY SINE Alu 1 311 0 671 341 165 14 chr9 10508054 10508973 -131762471 - L2 LINE L2 -689 2625 1568 356 226 33 2 chr9 10509049 10509590 -131761854 + (TA)n Simple_repeat Simple_repeat 1 557 0 267 133 0 0 chr9 10509591 10509636 -131761808 + (GA)n Simple_repeat Simple_repeat 1 45 0 183 250 0 0 chr9 10509899 10509935 -131761509 + L2 LINE L2 3191 3226 -87 312 283 43 0 chr9 10513266 10513358 -131758086 + MER5A DNA MER1_type 15 110 -79 210 37 0 0 chr9 10513891 10513918 -131757526 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1955 137 0 18 chr9 10513920 10514205 -131757239 - AluSx SINE Alu -32 280 1 940 277 5 9 chr9 10515510 10515730 -131755714 - MER58A DNA MER1_type 0 224 6 280 311 44 11 chr9 10515938 10516028 -131755416 + L2 LINE L2 3208 3300 -13 186 209 0 0 chr9 10516167 10516210 -131755234 + GA-rich Low_complexity Low_complexity 4 46 0 192 344 109 27 chr9 10516282 10516465 -131754979 - MIR SINE MIR -50 212 15 1909 131 28 3 chr9 10516649 10516931 -131754513 + AluSx SINE Alu 1 289 -23 248 275 100 0 chr9 10517414 10517494 -131753950 - L2 LINE L2 -1 3312 3225 25 75 0 0 chr9 10518450 10518503 -131752941 + AT_rich Low_complexity Low_complexity 1 53 0 2249 93 6 13 chr9 10518509 10518821 -131752623 + AluSg SINE Alu 1 310 0 328 179 12 12 chr9 10518837 10518921 -131752523 + (TA)n Simple_repeat Simple_repeat 2 85 0 23 78 0 0 chr9 10520336 10520387 -131751057 + AT_rich Low_complexity Low_complexity 1 51 0 186 344 33 0 chr9 10520456 10520517 -131750927 + L2 LINE L2 3246 3308 -5 261 299 41 21 chr9 10520679 10520776 -131750668 + MIR SINE MIR 1 99 -163 297 0 0 0 chr9 10520810 10520843 -131750601 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 1989 202 38 44 chr9 10521691 10522196 -131749248 + L1MB7 LINE L1 5667 6168 -16 201 321 46 38 chr9 10522443 10522574 -131748870 - L2 LINE L2 -223 3049 2918 2025 137 0 22 chr9 10522630 10522943 -131748501 + AluSx SINE Alu 1 306 -6 349 304 10 57 chr9 10525315 10525509 -131745935 + L2 LINE L2 2427 2611 -703 233 197 0 33 chr9 10526063 10526124 -131745320 + (CATATA)n Simple_repeat Simple_repeat 6 64 0 255 343 133 20 chr9 10526135 10526383 -131745061 + MLT1L LTR MaLR 220 495 -120 930 222 33 111 chr9 10526385 10526781 -131744663 - MLT1A1 LTR MaLR 0 365 1 6218 234 122 10 chr9 10526782 10528342 -131743102 - MLT1A1-int LTR MaLR -1 1734 1 789 172 126 128 chr9 10528342 10528708 -131742736 - MLT1A1 LTR MaLR 0 365 1 298 298 44 51 chr9 10528801 10528959 -131742485 + L2 LINE L2 3156 3312 -1 211 364 146 12 chr9 10529047 10529212 -131742232 - L3 LINE CR1 -377 1200 1014 743 335 80 29 chr9 10529652 10530175 -131741269 + MLT1K LTR MaLR 37 586 -2 4728 85 15 14 chr9 10531129 10531553 -131739891 + PABL_A LTR ERV1 1 428 -232 4307 10 0 0 chr9 10531553 10532041 -131739403 + L1PA2 LINE L1 5663 6150 -5 4728 85 15 14 chr9 10532041 10532275 -131739169 + PABL_A LTR ERV1 428 660 0 451 310 23 40 chr9 10532361 10532535 -131738909 - MIR SINE MIR -47 215 45 208 344 21 10 chr9 10532701 10532797 -131738647 - MER5A DNA MER1_type -78 111 15 897 180 16 86 chr9 10534195 10534440 -131737004 + LTR1B LTR ERV1 1 228 -598 936 194 150 70 chr9 10534455 10534843 -131736601 + LTR1B LTR ERV1 347 775 -10 421 257 38 0 chr9 10534843 10534948 -131736496 + MIR SINE MIR 83 191 -71 255 61 0 0 chr9 10535065 10535098 -131736346 + (TA)n Simple_repeat Simple_repeat 1 33 0 301 175 0 0 chr9 10535520 10535583 -131735861 - L1MA3 LINE L1 -3 6302 6240 225 263 152 79 chr9 10535795 10535920 -131735524 - L1MEc LINE L1 -4702 1608 1494 474 33 0 0 chr9 10535920 10535980 -131735464 + (TG)n Simple_repeat Simple_repeat 2 61 0 225 263 152 79 chr9 10535980 10536261 -131735183 - L1MEc LINE L1 -4816 1494 1172 1510 141 121 33 chr9 10536270 10536575 -131734869 - MER44D DNA MER2_type -1 608 7 469 325 90 62 chr9 10536628 10537431 -131734013 - L1MEc LINE L1 -5026 1093 269 31 26 0 0 chr9 10539432 10539470 -131731974 + AT_rich Low_complexity Low_complexity 1 38 0 1547 145 92 45 chr9 10539618 10539976 -131731468 + THE1C LTR MaLR 1 375 0 1236 163 54 0 chr9 10539977 10540198 -131731246 - L1P LINE L1 -2283 3863 3631 1417 113 24 0 chr9 10540198 10540408 -131731036 + L1PA13 LINE L1 5945 6161 -2 28 79 0 0 chr9 10540479 10540542 -131730902 + AT_rich Low_complexity Low_complexity 1 63 0 286 297 81 0 chr9 10540612 10540723 -131730721 - MIR SINE MIR -73 189 70 3755 99 13 2 chr9 10540859 10541405 -131730039 - L1PA13 LINE L1 -2 6161 5610 2254 89 6 25 chr9 10541444 10541759 -131729685 - AluY SINE Alu -2 309 1 1947 145 7 3 chr9 10542235 10542531 -131728913 - AluSq SINE Alu -16 297 1 2917 3 0 0 chr9 10542678 10542996 -131728448 + AluYb8 SINE Alu 1 318 0 23 33 0 0 chr9 10543548 10543578 -131727866 + AT_rich Low_complexity Low_complexity 1 30 0 225 281 0 0 chr9 10544027 10544084 -131727360 + L1MD3 LINE L1 6619 6675 -1320 219 103 0 0 chr9 10544610 10544649 -131726795 + (TA)n Simple_repeat Simple_repeat 2 40 0 21 0 0 0 chr9 10544710 10544731 -131726713 + AT_rich Low_complexity Low_complexity 1 21 0 4989 163 32 61 chr9 10544768 10544905 -131726539 + L1MC1 LINE L1 5185 5324 -1009 1960 151 3 0 chr9 10544905 10545189 -131726255 + AluSx SINE Alu 1 285 -27 564 15 0 0 chr9 10545193 10545258 -131726186 + (CAAAC)n Simple_repeat Simple_repeat 2 66 0 4989 163 32 61 chr9 10545258 10545313 -131726131 + L1MC1 LINE L1 5327 5382 -951 1980 139 0 0 chr9 10545313 10545607 -131725837 + AluSx SINE Alu 1 294 -18 4989 163 32 61 chr9 10545607 10546572 -131724872 + L1MC1 LINE L1 5382 6325 -8 254 312 0 26 chr9 10546681 10546758 -131724686 + L2 LINE L2 3239 3313 0 23 68 0 0 chr9 10546798 10546842 -131724602 + AT_rich Low_complexity Low_complexity 1 44 0 2437 105 14 3 chr9 10546867 10547230 -131724214 + L1PA7 LINE L1 5787 6153 -1 242 313 75 75 chr9 10547912 10548139 -131723305 + L2 LINE L2 3074 3300 -13 395 261 244 6 chr9 10548375 10548555 -131722889 - MIR SINE MIR -10 252 30 533 245 126 13 chr9 10549029 10549188 -131722256 + MER5B DNA MER1_type 2 178 0 22 56 0 0 chr9 10549644 10549680 -131721764 + AT_rich Low_complexity Low_complexity 1 36 0 695 271 65 81 chr9 10549781 10550212 -131721232 - L2 LINE L2 -476 2838 2415 23 33 0 0 chr9 10552993 10553023 -131718421 + AT_rich Low_complexity Low_complexity 1 30 0 218 372 69 13 chr9 10553085 10553316 -131718128 + L2 LINE L2 2289 2532 -782 32 0 0 0 chr9 10553792 10553824 -131717620 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr9 10554550 10554572 -131716872 + AT_rich Low_complexity Low_complexity 1 22 0 242 363 40 16 chr9 10555133 10555257 -131716187 - MIR SINE MIR -115 147 21 341 290 62 16 chr9 10555789 10555982 -131715462 + L1ME4a LINE L1 5710 5911 -210 277 322 18 53 chr9 10557518 10557689 -131713755 - MER5A DNA MER1_type -3 186 22 312 45 0 0 chr9 10558900 10558944 -131712500 - L1PA3 LINE L1 0 6155 6112 879 45 0 0 chr9 10558944 10559054 -131712390 + L1P2 LINE L1 5630 5739 -415 345 0 0 0 chr9 10560029 10560068 -131711376 + THE1B LTR MaLR 1 39 -325 8297 107 19 32 chr9 10560068 10561335 -131710109 + THE1A-int LTR MaLR 330 1580 0 2212 124 11 11 chr9 10561335 10561690 -131709754 + THE1A LTR MaLR 1 355 0 655 312 51 4 chr9 10562166 10562400 -131709044 - MIR SINE MIR -1 261 17 321 344 49 0 chr9 10563062 10563184 -131708260 + L2 LINE L2 3143 3270 -2 242 206 0 32 chr9 10563295 10563358 -131708086 + L1MEd LINE L1 1231 1291 -5081 267 350 0 0 chr9 10563691 10563811 -131707633 + L1MEd LINE L1 1577 1696 -4688 208 176 39 20 chr9 10563957 10564008 -131707436 + A-rich Low_complexity Low_complexity 1 52 0 344 337 36 29 chr9 10564351 10564627 -131706817 + L1MEd LINE L1 2453 2730 -3652 22 35 0 0 chr9 10564731 10564760 -131706684 + AT_rich Low_complexity Low_complexity 1 29 0 545 231 50 0 chr9 10565150 10565271 -131706173 - FLAM_A SINE Alu -6 127 1 1275 37 25 0 chr9 10566291 10566452 -131704992 - L1PA5 LINE L1 -189 5965 5801 1285 61 0 0 chr9 10566452 10566611 -131704833 + L1PA5 LINE L1 5989 6151 -3 351 333 71 29 chr9 10567179 10567389 -131704055 - MIR SINE MIR -13 249 31 2063 136 0 3 chr9 10568925 10569220 -131702224 + AluSx SINE Alu 1 294 -18 354 325 102 0 chr9 10569547 10569704 -131701740 - MIR SINE MIR 0 262 90 32 26 0 0 chr9 10569994 10570033 -131701411 + AT_rich Low_complexity Low_complexity 1 39 0 2002 270 18 18 chr9 10570657 10571202 -131700242 - MLT1H1 LTR MaLR -10 545 1 964 220 11 5 chr9 10571585 10571776 -131699668 + AluJb SINE Alu 104 295 -17 28 0 0 0 chr9 10572044 10572072 -131699372 + AT_rich Low_complexity Low_complexity 1 28 0 370 304 152 13 chr9 10572081 10572239 -131699205 - MER5A DNA MER1_type 0 189 10 518 115 13 0 chr9 10572309 10572387 -131699057 - MSTA LTR MaLR 0 428 350 2003 143 0 6 chr9 10573077 10573391 -131698053 - AluSx SINE Alu 0 312 1 21 0 0 0 chr9 10574170 10574191 -131697253 + AT_rich Low_complexity Low_complexity 1 21 0 202 349 70 104 chr9 10574205 10574446 -131696998 + L2 LINE L2 3035 3267 -5 25 31 0 0 chr9 10574962 10574994 -131696450 + AT_rich Low_complexity Low_complexity 1 32 0 4867 235 47 11 chr9 10575903 10578039 -131693405 + L1MA4 LINE L1 2005 4227 -3338 2762 203 18 3 chr9 10578030 10578642 -131692802 + L1MA4 LINE L1 4812 5432 -2133 * 5802 224 64 22 chr9 10578643 10580390 -131691054 + L1MA2 LINE L1 513 2677 -4888 1280 202 91 23 chr9 10580398 10580749 -131690695 - THE1C LTR MaLR 0 375 1 6732 158 23 4 chr9 10580749 10582805 -131688639 + L1MA2 LINE L1 5489 7584 -139 1496 176 60 3 chr9 10582909 10583228 -131688216 + L1MA2 LINE L1 5968 6304 0 4583 184 47 13 chr9 10583230 10584867 -131686577 + L1MA4 LINE L1 6027 7719 0 245 287 117 0 chr9 10584967 10585061 -131686383 - MIR SINE MIR -71 191 87 228 236 42 0 chr9 10585260 10585332 -131686112 + (TCTA)n Simple_repeat Simple_repeat 4 78 0 1636 192 40 32 chr9 10586016 10586386 -131685058 - THE1C LTR MaLR -2 373 1 520 43 0 0 chr9 10586597 10586667 -131684777 - L1PA3 LINE L1 0 6155 6086 241 311 66 19 chr9 10587260 10587366 -131684078 + L2 LINE L2 3162 3272 0 347 229 202 27 chr9 10587534 10587722 -131683722 - L1ME3 LINE L1 -4 6158 5938 24 0 0 0 chr9 10587753 10587777 -131683667 + AT_rich Low_complexity Low_complexity 1 24 0 206 287 35 9 chr9 10588875 10588990 -131682454 + (TA)n Simple_repeat Simple_repeat 2 119 0 364 339 90 17 chr9 10589192 10589425 -131682019 - MIR SINE MIR 0 262 13 267 31 0 0 chr9 10589510 10589542 -131681902 + (CA)n Simple_repeat Simple_repeat 1 32 0 21 0 0 0 chr9 10594201 10594222 -131677222 + AT_rich Low_complexity Low_complexity 1 21 0 213 121 0 0 chr9 10594989 10595022 -131676422 + (GA)n Simple_repeat Simple_repeat 1 33 0 25 0 0 0 chr9 10595264 10595289 -131676155 + AT_rich Low_complexity Low_complexity 1 25 0 9167 38 1 0 chr9 10595751 10596864 -131674580 - L1PA4 LINE L1 -1240 4906 3793 7281 37 5 1 chr9 10596864 10598101 -131673343 + L1PA4 LINE L1 4911 6149 -6 2359 32 0 0 chr9 10598794 10599077 -131672367 + L1PA4 LINE L1 5862 6144 -11 324 302 65 22 chr9 10599138 10599370 -131672074 - L1MEd LINE L1 -2242 4140 3899 444 289 99 44 chr9 10599571 10600151 -131671293 - L1MEd LINE L1 -2744 3638 2967 344 337 36 29 chr9 10600397 10600673 -131670771 - L1MEd LINE L1 -3652 2730 2453 208 176 39 20 chr9 10601016 10601067 -131670377 + T-rich Low_complexity Low_complexity 1 52 0 242 306 37 30 chr9 10601199 10601333 -131670111 - L1MEd LINE L1 -4673 1711 1577 313 288 23 45 chr9 10601666 10601798 -131669646 - L1MEd LINE L1 -5081 1291 1163 281 353 49 0 chr9 10601840 10601962 -131669482 - L2 LINE L2 -2 3270 3143 647 312 51 4 chr9 10602627 10602861 -131668583 + MIR SINE MIR 17 261 -1 25 0 0 0 chr9 10603631 10603656 -131667788 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr9 10605162 10605185 -131666259 + AT_rich Low_complexity Low_complexity 1 23 0 2426 58 3 0 chr9 10605386 10605680 -131665764 + AluY SINE Alu 1 295 -16 312 304 82 26 chr9 10605689 10605883 -131665561 + L1M4 LINE L1 2379 2583 -3563 363 248 183 30 chr9 10605927 10606157 -131665287 + L1M4 LINE L1 2690 2954 -3192 22 35 0 0 chr9 10607617 10607646 -131663798 + AT_rich Low_complexity Low_complexity 1 29 0 520 273 155 9 chr9 10611636 10611975 -131659469 - L1ME1 LINE L1 -201 5965 5587 429 283 121 36 chr9 10612032 10612671 -131658773 - L1ME1 LINE L1 -687 5479 4787 3028 185 77 65 chr9 10612774 10613421 -131658023 - L1MB7 LINE L1 -24 6160 5522 2064 50 0 0 chr9 10613421 10613681 -131657763 + L1PA4 LINE L1 5894 6153 -2 3028 185 77 65 chr9 10613681 10613857 -131657587 - L1MB7 LINE L1 -662 5522 5307 2167 111 16 10 chr9 10613857 10614164 -131657280 - AluSx SINE Alu -3 309 1 3028 185 77 65 chr9 10614164 10614276 -131657168 - L1MB7 LINE L1 -877 5307 5198 23 33 0 0 chr9 10614438 10614468 -131656976 + AT_rich Low_complexity Low_complexity 1 30 0 211 277 0 0 chr9 10614555 10614602 -131656842 + (CATG)n Simple_repeat Simple_repeat 3 49 0 319 347 96 6 chr9 10614602 10614769 -131656675 - L1ME1 LINE L1 -1992 4154 3973 398 280 146 57 chr9 10614854 10615537 -131655907 - L1ME1 LINE L1 -2713 3433 2690 369 306 58 65 chr9 10615581 10615784 -131655660 - L1ME1 LINE L1 -3563 2583 2381 2294 63 0 20 chr9 10615784 10616086 -131655358 - AluY SINE Alu -15 296 1 369 306 58 65 chr9 10616086 10616157 -131655287 - L1ME1 LINE L1 -3765 2381 2311 5290 90 69 5 chr9 10616873 10617638 -131653806 - L1PA6 LINE L1 -5 6149 5336 479 288 64 63 chr9 10618690 10618919 -131652525 + MIR SINE MIR 14 246 -16 450 0 0 0 chr9 10619148 10619198 -131652246 + (CA)n Simple_repeat Simple_repeat 2 51 0 24 0 0 0 chr9 10620524 10620548 -131650896 + AT_rich Low_complexity Low_complexity 1 24 0 181 327 106 0 chr9 10621145 10621249 -131650195 + L2 LINE L2 3125 3239 -33 2118 126 0 19 chr9 10622956 10623273 -131648171 - AluSq SINE Alu -2 311 1 257 336 19 10 chr9 10626744 10626848 -131644596 + MIR SINE MIR 49 153 -109 1320 213 48 78 chr9 10626866 10627266 -131644178 + MLT1C LTR MaLR 3 390 0 210 260 182 0 chr9 10627266 10627343 -131644101 + MIR SINE MIR 159 249 -13 349 287 85 37 chr9 10627746 10627910 -131643534 - MIR3 SINE MIR -5 203 32 215 372 74 65 chr9 10629247 10629478 -131641966 + L2 LINE L2 2948 3180 -92 259 250 98 11 chr9 10629820 10629912 -131641532 + MIR SINE MIR 58 157 -105 432 337 28 6 chr9 10630383 10630564 -131640880 + MER5A DNA MER1_type 1 185 -4 31 99 0 0 chr9 10631219 10631320 -131640124 + AT_rich Low_complexity Low_complexity 1 101 0 353 312 80 76 chr9 10631803 10631977 -131639467 - MIR SINE MIR -10 252 75 961 161 33 0 chr9 10631977 10632157 -131639287 + L1MB5 LINE L1 5981 6166 -8 353 312 80 76 chr9 10632157 10632232 -131639212 - MIR SINE MIR -187 75 2 207 0 0 0 chr9 10633563 10633586 -131637858 + (A)n Simple_repeat Simple_repeat 1 23 0 2197 119 0 3 chr9 10634978 10635281 -131636163 - AluSg SINE Alu -8 302 1 393 22 0 0 chr9 10636021 10636067 -131635377 + (CA)n Simple_repeat Simple_repeat 1 46 0 4542 193 48 22 chr9 10636104 10637157 -131634287 + L1MD2 LINE L1 5280 6359 0 21 0 0 0 chr9 10637309 10637330 -131634114 + AT_rich Low_complexity Low_complexity 1 21 0 514 164 55 18 chr9 10637343 10637453 -131633991 - MLT1B LTR MaLR -2 388 275 373 176 54 0 chr9 10637672 10637746 -131633698 - MLT1B-int LTR MaLR -488 883 806 * 1736 226 29 13 chr9 10637742 10638122 -131633322 - MLT1B-int LTR MaLR -703 668 283 438 243 36 9 chr9 10638127 10638238 -131633206 - MLT1B-int LTR MaLR -1256 115 2 1147 214 19 62 chr9 10638239 10638561 -131632883 - MLT1B LTR MaLR 0 390 83 377 184 56 56 chr9 10638594 10638719 -131632725 - L1ME4a LINE L1 -30 6091 5967 21 0 0 0 chr9 10639256 10639277 -131632167 + AT_rich Low_complexity Low_complexity 1 21 0 244 376 78 45 chr9 10639350 10639592 -131631852 + L2 LINE L2 2987 3236 -36 283 325 0 12 chr9 10640145 10640225 -131631219 - MIR SINE MIR -155 107 29 2357 71 0 7 chr9 10641071 10641379 -131630065 - AluY SINE Alu -5 306 1 192 352 111 14 chr9 10641381 10641597 -131629847 - L3b LINE CR1 -224 1359 1123 26 0 0 0 chr9 10642196 10642222 -131629222 + AT_rich Low_complexity Low_complexity 1 26 0 395 181 48 0 chr9 10643680 10643763 -131627681 + MIR SINE MIR 174 260 -2 27 29 0 0 chr9 10643784 10643818 -131627626 + AT_rich Low_complexity Low_complexity 1 34 0 201 268 0 0 chr9 10644518 10644574 -131626870 + A-rich Low_complexity Low_complexity 1 56 0 2476 65 0 3 chr9 10644735 10645045 -131626399 - AluY SINE Alu -2 309 1 5397 57 3 0 chr9 10645062 10645734 -131625710 - L1PA7 LINE L1 -33 6121 5448 2153 161 13 15 chr9 10647418 10647809 -131623635 + MLT1B LTR MaLR 1 390 0 598 291 65 57 chr9 10648159 10648510 -131622934 + L1ME4a LINE L1 5500 5853 -268 293 333 56 9 chr9 10650772 10650880 -131620564 + MIR3 SINE MIR 42 154 -54 2356 59 3 40 chr9 10651081 10651402 -131620042 + AluY SINE Alu 1 309 -2 434 367 56 53 chr9 10651543 10651954 -131619490 + L2 LINE L2 2857 3268 -4 288 77 0 0 chr9 10652738 10652777 -131618667 + (CA)n Simple_repeat Simple_repeat 1 39 0 1556 205 3 10 chr9 10652835 10653137 -131618307 + AluJb SINE Alu 1 300 -12 985 356 26 21 chr9 10653461 10654043 -131617401 + L1PA13 LINE L1 1 585 -6202 4333 163 55 66 chr9 10654230 10655818 -131615626 + L1PA16 LINE L1 4588 6157 -9 3026 221 59 14 chr9 10655793 10656763 -131614681 + L1MC3 LINE L1 5254 7764 -21 * 25 51 0 0 chr9 10656772 10656811 -131614633 + AT_rich Low_complexity Low_complexity 1 39 0 2382 71 3 0 chr9 10657229 10657526 -131613918 - AluY SINE Alu -13 298 1 25 0 0 0 chr9 10659255 10659280 -131612164 + AT_rich Low_complexity Low_complexity 1 25 0 191 168 47 19 chr9 10660197 10660304 -131611140 + (TA)n Simple_repeat Simple_repeat 1 110 0 183 129 0 0 chr9 10660303 10660334 -131611110 + (CA)n Simple_repeat Simple_repeat 2 32 0 * 2130 266 68 13 chr9 10660612 10661327 -131610117 + L1MC4a LINE L1 7052 7806 -2 198 156 22 44 chr9 10661593 10661638 -131609806 - L2 LINE L2 -8 3305 3262 428 88 0 0 chr9 10662048 10662105 -131609339 - L1P1 LINE L1 -524 5631 5575 962 43 0 0 chr9 10662105 10662218 -131609226 + L1PA5 LINE L1 6034 6150 -4 25 97 0 9 chr9 10662262 10662299 -131609145 + AT_rich Low_complexity Low_complexity 1 37 -75 1686 147 31 20 chr9 10662299 10662592 -131608852 + AluSg SINE Alu 1 296 -14 25 97 0 9 chr9 10662592 10662667 -131608777 + AT_rich Low_complexity Low_complexity 37 112 0 2017 122 0 7 chr9 10663203 10663522 -131607922 - AluSx SINE Alu 0 312 1 2407 70 0 3 chr9 10663708 10664020 -131607424 + AluY SINE Alu 1 311 0 2396 66 20 0 chr9 10664955 10665260 -131606184 + AluY SINE Alu 1 311 0 191 246 70 18 chr9 10666236 10666293 -131605151 + L2 LINE L2 3254 3313 0 231 233 0 0 chr9 10668901 10668944 -131602500 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 182 381 103 8 chr9 10669429 10669555 -131601889 - L2 LINE L2 -8 3264 3127 285 244 23 0 chr9 10669579 10669665 -131601779 + L1MC4 LINE L1 6615 6702 -1340 345 377 0 0 chr9 10670067 10670205 -131601239 - MIR SINE MIR -56 206 69 265 302 23 54 chr9 10670254 10670383 -131601061 - L2 LINE L2 -592 2722 2598 2649 268 72 23 chr9 10670418 10671316 -131600128 + MER69 DNA AcHobo 1 942 -1584 446 240 126 29 chr9 10671307 10671553 -131599891 + MER69 DNA AcHobo 2156 2425 -101 * 294 347 36 32 chr9 10671777 10672025 -131599419 - L2 LINE L2 -933 2381 2133 556 232 7 7 chr9 10672240 10672378 -131599066 - L1MA10 LINE L1 -4 6330 6193 198 0 0 0 chr9 10672679 10672701 -131598743 + (T)n Simple_repeat Simple_repeat 1 22 0 39 50 0 0 chr9 10672743 10672803 -131598641 + AT_rich Low_complexity Low_complexity 1 60 0 1946 146 0 7 chr9 10672999 10673307 -131598137 + AluSq SINE Alu 1 306 -7 25 0 0 0 chr9 10673576 10673601 -131597843 + AT_rich Low_complexity Low_complexity 1 25 0 1119 240 94 36 chr9 10673625 10674087 -131597357 - MER39 LTR ERV1 0 707 1 24 0 0 0 chr9 10674561 10674585 -131596859 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr9 10675473 10675494 -131595950 + AT_rich Low_complexity Low_complexity 1 21 0 850 188 19 0 chr9 10675622 10675782 -131595662 + FRAM SINE Alu 1 159 -17 195 337 208 0 chr9 10676045 10676146 -131595298 + L2 LINE L2 3151 3272 0 21 0 0 0 chr9 10676473 10676494 -131594950 + AT_rich Low_complexity Low_complexity 1 21 0 341 254 35 70 chr9 10678058 10678172 -131593272 + L2 LINE L2 3200 3309 -4 21 36 0 0 chr9 10678854 10678882 -131592562 + AT_rich Low_complexity Low_complexity 1 28 0 233 204 0 0 chr9 10680007 10680051 -131591393 + L2 LINE L2 3262 3305 -8 26 30 0 0 chr9 10680238 10680271 -131591173 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr9 10680378 10680399 -131591045 + AT_rich Low_complexity Low_complexity 1 21 0 266 272 196 58 chr9 10680528 10680752 -131590692 + MIR SINE MIR 6 260 -2 925 171 48 16 chr9 10681572 10681759 -131589685 + MER50 LTR ERV1 1 193 -541 510 260 73 29 chr9 10681952 10682156 -131589288 + LTR7 LTR ERV1 238 450 0 * 2737 181 39 8 chr9 10682156 10682644 -131588800 + MER50 LTR ERV1 182 685 -49 2901 154 16 8 chr9 10682966 10683473 -131587971 + MER75 DNA T2_type 4 514 0 2429 213 73 63 chr9 10683627 10684220 -131587224 + LTR48 LTR ERV1 1 604 -183 1270 226 3 37 chr9 10684220 10684516 -131586928 - AluJo SINE Alu -26 286 1 2429 213 73 63 chr9 10684516 10684679 -131586765 + LTR48 LTR ERV1 604 764 -23 2195 94 10 0 chr9 10684695 10684993 -131586451 - AluY SINE Alu -9 302 2 353 206 0 0 chr9 10685375 10685438 -131586006 + Tigger2 DNA MER2_type 7 69 -2649 * 1145 160 166 64 chr9 10685427 10685740 -131585704 + Tigger2 DNA MER2_type 2273 2617 -101 * 7621 140 10 99 chr9 10685729 10686394 -131585050 + Tigger1 DNA MER2_type 975 1698 -720 748 181 0 23 chr9 10686394 10686527 -131584917 + AluJo/FLAM SINE Alu 1 130 -172 424 169 0 0 chr9 10686527 10686592 -131584852 + AluSp SINE Alu 134 198 -115 7621 140 10 99 chr9 10686592 10686864 -131584580 + Tigger1 DNA MER2_type 1697 1992 -426 2240 101 0 0 chr9 10686864 10687162 -131584282 + AluY SINE Alu 1 298 -13 7621 140 10 99 chr9 10687162 10687743 -131583701 + Tigger1 DNA MER2_type 1992 2418 0 8434 208 71 41 chr9 10687751 10690237 -131581207 + L1MA9 LINE L1 2125 4684 -1462 1413 142 164 0 chr9 10690241 10690473 -131580971 - AluJb SINE Alu -10 302 33 2332 209 13 20 chr9 10690493 10691038 -131580406 + L1MA9 LINE L1 4682 5222 -924 1431 149 33 78 chr9 10691057 10691392 -131580052 + L1MA9 LINE L1 5865 6184 -128 452 123 14 0 chr9 10691401 10691474 -131579970 - MER41E LTR ERV1 -112 400 327 424 195 16 24 chr9 10691486 10691609 -131579835 + L1MA9 LINE L1 6190 6311 -1 25 99 0 0 chr9 10691925 10692006 -131579438 + AT_rich Low_complexity Low_complexity 1 81 0 24 32 0 0 chr9 10692594 10692625 -131578819 + AT_rich Low_complexity Low_complexity 1 31 0 2163 123 0 0 chr9 10694077 10694377 -131577067 + AluSg SINE Alu 1 300 -10 5119 180 59 6 chr9 10694947 10696726 -131574718 - L1PA16 LINE L1 -6 6160 4280 387 337 76 6 chr9 10697081 10697253 -131574191 - MIR SINE MIR -34 228 45 194 81 27 0 chr9 10697355 10697392 -131574052 + (TA)n Simple_repeat Simple_repeat 2 39 0 2052 133 0 0 chr9 10697569 10697854 -131573590 + AluSc SINE Alu 1 285 -24 360 85 102 0 chr9 10697854 10697972 -131573472 + (TA)n Simple_repeat Simple_repeat 1 130 0 1262 199 86 12 chr9 10698146 10698245 -131573199 + MER46B DNA MER2_type 1 91 -2640 4319 164 20 12 chr9 10698245 10698557 -131572887 + L1MA4 LINE L1 5484 5792 -508 2252 158 62 10 chr9 10698557 10698961 -131572483 - MSTA LTR MaLR -3 425 1 4319 164 20 12 chr9 10698961 10699453 -131571991 + L1MA4 LINE L1 5792 6294 -6 1262 199 86 12 chr9 10699453 10699689 -131571755 + MER46B DNA MER2_type 91 236 0 340 263 79 20 chr9 10700031 10700183 -131571261 + MER113 DNA MER1_type? 276 436 -85 374 301 21 0 chr9 10700344 10700461 -131570983 + MIR SINE MIR 11 130 -78 748 221 17 30 chr9 10700464 10700695 -131570749 - L1MC5 LINE L1 -731 7230 7003 647 197 6 0 chr9 10700746 10700924 -131570520 + GA-rich Low_complexity Low_complexity 2 180 0 572 321 71 64 chr9 10701149 10701731 -131569713 - L1MCa LINE L1 -834 1050 17 230 106 0 85 chr9 10702129 10702160 -131569284 - L1PA4 LINE L1 -1929 4217 4190 9321 42 8 0 chr9 10702160 10704084 -131567360 + L1PA4 LINE L1 4218 6149 -6 230 106 0 85 chr9 10704084 10704099 -131567345 - L1P LINE L1 -1956 4190 4175 187 200 0 0 chr9 10705347 10705382 -131566062 - L2 LINE L2 -4 3268 3234 42 71 0 0 chr9 10705501 10705585 -131565859 + AT_rich Low_complexity Low_complexity 1 84 0 22 70 0 0 chr9 10705608 10705651 -131565793 + AT_rich Low_complexity Low_complexity 1 43 0 386 298 119 70 chr9 10707832 10708262 -131563182 + MLT1L LTR MaLR 1 451 -164 4673 47 6 9 chr9 10708592 10709577 -131561867 - MER11C LTR ERVK 0 1071 1 1050 338 66 33 chr9 10709661 10710329 -131561115 + ERVL LTR ERVL 1949 2638 -3126 1072 350 65 47 chr9 10710891 10711873 -131559571 + ERVL LTR ERVL 3286 4285 -1479 542 268 191 0 chr9 10712015 10712183 -131559261 + MIR SINE MIR 41 240 -22 7494 30 6 5 chr9 10713110 10714532 -131556912 - L1PA3 LINE L1 -3 6152 4730 5080 36 2 0 chr9 10714532 10715148 -131556296 + L1PA3 LINE L1 4131 4747 -1399 1460 154 143 0 chr9 10715366 10715638 -131555806 - AluSx SINE Alu -1 311 1 1445 67 0 0 chr9 10715951 10716131 -131555313 + AluSc SINE Alu 130 309 0 397 324 44 9 chr9 10716633 10716862 -131554582 + MIR SINE MIR 28 262 0 322 346 50 39 chr9 10716897 10717079 -131554365 - MIR3 SINE MIR -6 202 19 216 0 0 0 chr9 10717638 10717662 -131553782 + (T)n Simple_repeat Simple_repeat 1 24 0 803 274 43 10 chr9 10718326 10718534 -131552910 + MER58A DNA MER1_type 1 215 -9 281 294 161 7 chr9 10718770 10718913 -131552531 + MIR SINE MIR 86 250 -12 853 155 37 0 chr9 10719655 10719816 -131551628 + L1MA9 LINE L1 5863 6029 -283 383 121 0 91 chr9 10720372 10720570 -131550874 + (TA)n Simple_repeat Simple_repeat 1 180 0 328 311 192 6 chr9 10723801 10723968 -131547476 - MIR SINE MIR -49 213 16 1436 169 58 38 chr9 10725892 10726236 -131545208 - L1MA8 LINE L1 -4 6287 5937 525 230 109 30 chr9 10726330 10726495 -131544949 + MIR SINE MIR 68 245 -17 885 205 0 0 chr9 10726970 10727121 -131544323 + AluJb SINE Alu 134 284 -28 281 361 71 0 chr9 10728027 10728196 -131543248 - MIR SINE MIR 0 262 82 1218 245 30 18 chr9 10728468 10728803 -131542641 - MER58B DNA MER1_type -1 340 2 2065 119 0 29 chr9 10728879 10729190 -131542254 - AluSc SINE Alu -2 307 6 1427 147 29 21 chr9 10729197 10729476 -131541968 - L1MA6 LINE L1 -2 6298 6018 1378 209 94 115 chr9 10730850 10731785 -131539659 - LTR1B LTR ERV1 -4 1016 1 22 0 0 0 chr9 10732900 10732922 -131538522 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr9 10732963 10732984 -131538460 + AT_rich Low_complexity Low_complexity 1 21 0 270 285 65 24 chr9 10734015 10734138 -131537306 - MIR3 SINE MIR -5 203 76 246 316 32 11 chr9 10734170 10734265 -131537179 - MIR3 SINE MIR -29 179 83 1584 168 45 45 chr9 10734278 10734652 -131536792 + THE1C LTR MaLR 1 374 -1 333 251 18 105 chr9 10734666 10734837 -131536607 + MER117 DNA MER1_type 41 196 -1 2263 78 3 7 chr9 10736621 10736928 -131534516 - AluSc SINE Alu -3 306 1 330 332 56 39 chr9 10737289 10737521 -131533923 - L1MC/D LINE L1 -2062 5746 5511 229 294 167 49 chr9 10738521 10738766 -131532678 - L2 LINE L2 -676 2638 2365 250 267 35 23 chr9 10738854 10738940 -131532504 + MLT1L LTR MaLR 120 206 -409 2255 101 0 16 chr9 10739362 10739679 -131531765 + AluSx SINE Alu 1 312 0 1672 181 20 0 chr9 10739849 10740148 -131531296 - AluJo SINE Alu -3 309 5 26 64 0 0 chr9 10740237 10740284 -131531160 + AT_rich Low_complexity Low_complexity 1 47 0 2235 159 51 19 chr9 10740568 10740983 -131530461 + MSTC LTR MaLR 1 428 0 21 57 0 0 chr9 10742090 10742125 -131529319 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr9 10743624 10743648 -131527796 + AT_rich Low_complexity Low_complexity 1 24 0 343 348 51 41 chr9 10743800 10744327 -131527117 + HAL1b LINE L1 303 590 -758 620 261 30 53 chr9 10744450 10744714 -131526730 + L1MC5 LINE L1 6976 7233 -728 281 277 61 48 chr9 10744910 10745141 -131526303 + L1MC5 LINE L1 7262 7495 -466 244 311 68 19 chr9 10745415 10745576 -131525868 + L1MC5 LINE L1 7749 7917 -44 397 325 0 26 chr9 10745888 10746116 -131525328 + L1MC4 LINE L1 7693 7914 -128 312 305 16 8 chr9 10747245 10747373 -131524071 - MIR SINE MIR 0 262 134 485 284 40 113 chr9 10747531 10747667 -131523777 + MIR SINE MIR 7 115 -147 1516 162 53 15 chr9 10747667 10747933 -131523511 + AluJo SINE Alu 11 286 -26 485 284 40 113 chr9 10747933 10748071 -131523373 + MIR SINE MIR 115 261 -1 296 207 0 0 chr9 10750671 10750729 -131520715 + AluJ/monomer SINE Alu 241 298 -2 210 176 0 0 chr9 10751372 10751423 -131520021 + GA-rich Low_complexity Low_complexity 3 53 0 2140 112 7 0 chr9 10753032 10753335 -131518109 + AluSp SINE Alu 1 305 -8 192 77 0 0 chr9 10754294 10754320 -131517124 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 654 234 57 29 chr9 10754553 10754762 -131516682 - MER20 DNA MER1_type -1 218 4 1716 114 87 70 chr9 10755320 10755689 -131515755 + THE1C LTR MaLR 1 375 0 26 30 0 0 chr9 10756465 10756498 -131514946 + AT_rich Low_complexity Low_complexity 1 33 0 252 330 199 6 chr9 10756750 10756926 -131514518 + MIR SINE MIR 20 229 -33 322 306 40 24 chr9 10757189 10757313 -131514131 + MLT1H LTR MaLR 229 354 -195 21 0 0 0 chr9 10757818 10757839 -131513605 + AT_rich Low_complexity Low_complexity 1 21 0 1944 189 70 5 chr9 10758094 10758491 -131512953 + MSTB LTR MaLR 1 423 -3 2761 96 5 5 chr9 10759943 10760318 -131511126 + THE1C LTR MaLR 1 375 0 329 311 92 26 chr9 10760319 10760547 -131510897 + MLT1-int LTR MaLR 291 533 -838 830 194 138 6 chr9 10760835 10761198 -131510246 + MLT1D LTR MaLR 59 494 -11 843 293 162 31 chr9 10761873 10762421 -131509023 + MLT1G LTR MaLR 11 590 0 1950 184 45 21 chr9 10763725 10764144 -131507300 + MSTB1 LTR MaLR 4 432 0 2006 146 50 31 chr9 10764324 10764743 -131506701 + L1MA8 LINE L1 5861 6287 -4 877 226 252 87 chr9 10764917 10765128 -131506316 + LTR41 LTR ERVL 1 176 -597 387 41 0 0 chr9 10765128 10765177 -131506267 + (TG)n Simple_repeat Simple_repeat 1 49 0 877 226 252 87 chr9 10765177 10765542 -131505902 + LTR41 LTR ERVL 176 700 -73 1531 175 7 11 chr9 10765542 10765827 -131505617 - AluJo SINE Alu -17 295 12 877 226 252 87 chr9 10765827 10765904 -131505540 + LTR41 LTR ERVL 700 763 -10 1400 311 32 64 chr9 10767407 10768487 -131502957 - L2 LINE L2 0 3313 2198 1288 221 13 7 chr9 10768504 10768802 -131502642 + L1P LINE L1 2022 2321 -3825 199 296 28 0 chr9 10768945 10769016 -131502428 - L2 LINE L2 -1606 1708 1636 1227 246 31 24 chr9 10769169 10769458 -131501986 - AluJb SINE Alu -11 291 1 454 313 87 38 chr9 10769495 10769783 -131501661 + L2 LINE L2 2584 2885 -429 294 330 76 0 chr9 10770051 10770169 -131501275 + L2 LINE L2 3182 3308 -5 701 154 75 58 chr9 10770871 10771059 -131500385 + L1MA8 LINE L1 5938 6128 -163 270 0 0 0 chr9 10772471 10772501 -131498943 + (CA)n Simple_repeat Simple_repeat 2 31 0 822 248 61 5 chr9 10773178 10773376 -131498068 - MER58A DNA MER1_type -6 218 10 219 368 34 8 chr9 10774105 10774222 -131497222 + MER5A DNA MER1_type 6 125 -64 934 221 52 31 chr9 10774267 10774593 -131496851 + L1M4 LINE L1 4178 4510 -1636 * 3576 160 57 8 chr9 10774580 10775361 -131496083 + L1MA8 LINE L1 5180 5993 -298 3041 182 12 21 chr9 10775424 10775981 -131495463 - MSTB-int LTR MaLR -1051 600 48 1962 106 0 0 chr9 10775981 10776236 -131495208 - AluSc SINE Alu -16 293 39 3041 182 12 21 chr9 10776236 10776283 -131495161 - MSTB-int LTR MaLR -1603 48 2 1022 232 19 5 chr9 10776284 10776495 -131494949 - MSTB LTR MaLR 0 426 213 22 0 0 0 chr9 10776827 10776849 -131494595 + AT_rich Low_complexity Low_complexity 1 22 0 38 22 0 0 chr9 10776903 10776948 -131494496 + AT_rich Low_complexity Low_complexity 1 45 0 1395 175 93 11 chr9 10776999 10777268 -131494176 - MSTA LTR MaLR 0 428 138 22 0 0 0 chr9 10777887 10777909 -131493535 + AT_rich Low_complexity Low_complexity 1 22 0 325 269 134 15 chr9 10778712 10778846 -131492598 + MIR SINE MIR 110 259 -3 233 298 36 24 chr9 10778865 10778949 -131492495 + L2 LINE L2 3184 3268 -4 189 261 152 43 chr9 10779898 10779990 -131491454 + MIR SINE MIR 105 206 -56 1644 190 44 36 chr9 10782646 10783031 -131488413 - MLT1B LTR MaLR 0 390 3 537 265 143 31 chr9 10785352 10785575 -131485869 + MIR SINE MIR 15 262 0 22 35 0 0 chr9 10787134 10787163 -131484281 + AT_rich Low_complexity Low_complexity 1 29 0 6790 231 40 34 chr9 10788755 10792029 -131479415 + L1M2c LINE L1 3 2999 -3789 * 8154 200 103 16 chr9 10792006 10794261 -131477183 + L1M2c LINE L1 3208 5658 -1130 23 0 0 0 chr9 10796571 10796594 -131474850 + AT_rich Low_complexity Low_complexity 1 23 0 548 253 203 25 chr9 10797139 10797341 -131474103 - MIR SINE MIR -20 242 5 1006 250 103 32 chr9 10798061 10798449 -131472995 + L1MC4 LINE L1 7502 7936 -106 269 68 23 0 chr9 10798449 10798493 -131472951 + (TG)n Simple_repeat Simple_repeat 2 46 0 1006 250 103 32 chr9 10798493 10798608 -131472836 + L1MC4 LINE L1 7936 8041 -1 310 240 64 8 chr9 10798618 10798743 -131472701 + HAL1 LINE L1 1102 1233 -1274 301 244 61 0 chr9 10799238 10799320 -131472124 + HAL1 LINE L1 1846 1932 -575 507 246 113 35 chr9 10799425 10799681 -131471763 + HAL1 LINE L1 2117 2392 -115 1658 191 3 7 chr9 10801166 10801469 -131469975 - AluJo SINE Alu -10 302 1 279 0 0 0 chr9 10804097 10804128 -131467316 + (CA)n Simple_repeat Simple_repeat 2 32 0 2078 118 0 10 chr9 10804743 10805031 -131466413 - AluSc SINE Alu -24 285 1 180 0 0 0 chr9 10805363 10805383 -131466061 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 21 36 0 0 chr9 10805936 10805964 -131465480 + AT_rich Low_complexity Low_complexity 1 28 0 26 50 0 0 chr9 10806043 10806083 -131465361 + AT_rich Low_complexity Low_complexity 1 40 0 26 0 0 0 chr9 10806303 10806329 -131465115 + AT_rich Low_complexity Low_complexity 1 26 0 22 35 0 0 chr9 10806522 10806551 -131464893 + AT_rich Low_complexity Low_complexity 1 29 0 42078 37 23 2 chr9 10806553 10812577 -131458867 + L1PA3 LINE L1 2 6154 -1 28 0 0 0 chr9 10812577 10812605 -131458839 + AT_rich Low_complexity Low_complexity 1 28 0 25 90 0 0 chr9 10812760 10812827 -131458617 + AT_rich Low_complexity Low_complexity 1 67 0 383 241 9 19 chr9 10815336 10815444 -131456000 - LTR33 LTR ERVL -13 508 402 371 316 78 31 chr9 10815539 10815795 -131455649 - LTR33 LTR ERVL -250 271 4 197 391 120 0 chr9 10815830 10815922 -131455522 + MIR SINE MIR 49 151 -111 268 378 75 70 chr9 10816038 10816307 -131455137 + L2 LINE L2 2869 3142 -130 1346 127 35 35 chr9 10816307 10816535 -131454909 + MER30 DNA MER1_type 3 230 0 268 378 75 70 chr9 10816535 10816667 -131454777 + L2 LINE L2 3142 3272 0 1854 148 7 0 chr9 10816679 10816962 -131454482 - AluSx SINE Alu -27 285 1 887 284 116 34 chr9 10817451 10818148 -131453296 - L1MC4a LINE L1 -1748 6060 5307 180 0 0 0 chr9 10818753 10818773 -131452671 + (TTCA)n Simple_repeat Simple_repeat 2 21 0 496 329 119 35 chr9 10818788 10819098 -131452346 - L2 LINE L2 -33 3280 2945 267 257 9 48 chr9 10819141 10819246 -131452198 + LTR16A LTR ERVL 28 128 -322 543 274 0 0 chr9 10819457 10819581 -131451863 + LTR16A LTR ERVL 267 390 -60 1804 320 123 23 chr9 10819679 10821042 -131450402 - L2 LINE L2 0 3313 1806 326 331 6 6 chr9 10821047 10821204 -131450240 + L1M4 LINE L1 2679 2835 -3311 27 92 0 0 chr9 10821275 10821351 -131450093 + AT_rich Low_complexity Low_complexity 1 76 0 313 367 75 0 chr9 10821516 10821636 -131449808 + L2 LINE L2 3141 3269 -3 678 42 84 6 chr9 10822645 10822811 -131448633 + (TA)n Simple_repeat Simple_repeat 2 180 0 721 41 71 12 chr9 10822822 10822992 -131448452 + (TA)n Simple_repeat Simple_repeat 1 180 0 200 122 0 24 chr9 10825014 10825055 -131446389 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 285 294 57 52 chr9 10825136 10825330 -131446114 + MLT1K LTR MaLR 375 569 -19 2641 23 7 3 chr9 10825782 10826092 -131445352 + AluY SINE Alu 1 311 0 259 333 59 75 chr9 10826970 10827559 -131443885 + ERVL LTR ERVL 841 1420 -4344 897 325 122 31 chr9 10827893 10828469 -131442975 + ERVL LTR ERVL 1801 2428 -3336 608 243 143 11 chr9 10828477 10828666 -131442778 + MLT2D LTR ERVL 4 217 -197 717 166 14 7 chr9 10828667 10828806 -131442638 + L1PB2 LINE L1 6012 6151 0 339 65 0 0 chr9 10828833 10828879 -131442565 + (CA)n Simple_repeat Simple_repeat 2 47 0 2092 127 13 0 chr9 10829354 10829662 -131441782 + AluSx SINE Alu 1 312 0 2348 53 4 0 chr9 10830837 10831161 -131440283 - AluY SINE Alu 0 325 1 21 36 0 0 chr9 10831857 10831885 -131439559 + AT_rich Low_complexity Low_complexity 1 28 0 249 389 13 6 chr9 10832519 10832676 -131438768 + L1MC3 LINE L1 558 715 -5404 337 284 27 34 chr9 10832874 10833022 -131438422 + L1MC3 LINE L1 3596 3742 -2387 * 8386 212 81 36 chr9 10833014 10833587 -131437857 + L1MC3 LINE L1 4607 5152 -2616 2197 100 0 3 chr9 10833587 10833876 -131437568 + AluSq SINE Alu 1 288 -25 8386 212 81 36 chr9 10833876 10836174 -131435270 + L1MC3 LINE L1 5152 7591 -177 1909 67 4 0 chr9 10836144 10836412 -131435032 + L1P LINE L1 5118 5386 -743 * 226 184 20 0 chr9 10836476 10836525 -131434919 + (TA)n Simple_repeat Simple_repeat 1 50 0 297 146 463 0 chr9 10837238 10837320 -131434124 + L1MA6 LINE L1 6173 6293 -4 180 191 0 24 chr9 10837589 10837631 -131433813 - L2 LINE L2 -969 2345 2305 419 103 82 0 chr9 10839363 10839460 -131431984 + (CAGAGA)n Simple_repeat Simple_repeat 2 106 0 349 321 83 37 chr9 10840995 10841213 -131430231 + MIR SINE MIR 32 259 -3 233 313 53 30 chr9 10842287 10842418 -131429026 - MIR SINE MIR -114 148 15 464 262 119 12 chr9 10842429 10842597 -131428847 + MIR SINE MIR 5 190 -72 476 319 68 16 chr9 10842816 10843007 -131428437 - MIR SINE MIR -10 252 52 199 351 13 46 chr9 10844234 10844385 -131427059 - L2 LINE L2 -10 3303 3158 224 321 57 0 chr9 10844559 10844665 -131426779 - L2 LINE L2 -411 2903 2792 198 295 57 72 chr9 10845350 10845543 -131425901 - L2 LINE L2 -437 2877 2688 2003 39 78 0 chr9 10845543 10845799 -131425645 + AluY SINE Alu 36 311 0 21 0 0 0 chr9 10846266 10846287 -131425157 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr9 10846756 10846782 -131424662 + AT_rich Low_complexity Low_complexity 1 26 0 25 51 0 0 chr9 10847305 10847344 -131424100 + AT_rich Low_complexity Low_complexity 1 39 0 1968 213 78 23 chr9 10847873 10848347 -131423097 - MLT1D LTR MaLR 0 505 6 1558 185 3 33 chr9 10848520 10848823 -131422621 + AluJo SINE Alu 1 294 -18 221 109 22 0 chr9 10849116 10849162 -131422282 + T-rich Low_complexity Low_complexity 1 47 0 295 320 72 16 chr9 10850047 10850172 -131421272 + L2 LINE L2 3141 3272 0 342 313 167 7 chr9 10850818 10850968 -131420476 + MER5A DNA MER1_type 9 182 -7 368 301 103 20 chr9 10851080 10851226 -131420218 + MIR SINE MIR 25 182 -80 506 281 32 67 chr9 10851367 10851652 -131419792 + Charlie2 DNA MER1_type 6 280 -2502 2080 133 3 3 chr9 10851726 10852026 -131419418 - AluSx SINE Alu -12 300 1 207 0 0 0 chr9 10852029 10852052 -131419392 + (A)n Simple_repeat Simple_repeat 1 23 0 493 185 123 31 chr9 10852206 10852368 -131419076 + Charlie2a DNA MER1_type 1495 1671 -1191 372 284 22 15 chr9 10853289 10853423 -131418021 + L1MCc LINE L1 19 153 -6270 1021 257 84 97 chr9 10853512 10854623 -131416821 + L1MCc LINE L1 1350 2601 -4479 24 85 0 0 chr9 10854818 10854877 -131416567 + AT_rich Low_complexity Low_complexity 1 59 0 281 221 35 122 chr9 10855587 10855666 -131415778 + MER106B DNA MER1_type 903 961 -98 2084 125 3 3 chr9 10855666 10855978 -131415466 + AluSx SINE Alu 1 312 0 281 221 35 122 chr9 10855978 10856070 -131415374 + MER106B DNA MER1_type 961 1059 0 316 264 0 64 chr9 10856078 10856188 -131415256 + L1ME3A LINE L1 5265 5367 -2441 330 354 59 39 chr9 10856257 10856613 -131414831 + L1ME3A LINE L1 5513 5875 -295 2335 69 0 20 chr9 10856694 10856999 -131414445 - AluY SINE Alu -12 299 1 334 248 57 95 chr9 10857121 10857331 -131414113 + L2 LINE L2 3102 3303 -10 360 0 0 0 chr9 10857815 10857855 -131413589 + (TG)n Simple_repeat Simple_repeat 2 41 0 30 0 0 0 chr9 10858082 10858112 -131413332 + AT_rich Low_complexity Low_complexity 1 30 0 28 79 0 0 chr9 10859429 10859492 -131411952 + AT_rich Low_complexity Low_complexity 1 63 0 366 295 111 53 chr9 10859540 10859784 -131411660 - LTR41 LTR ERVL -6 767 510 407 263 66 7 chr9 10860235 10860372 -131411072 - LTR41 LTR ERVL -588 185 41 23 54 0 0 chr9 10860997 10861034 -131410410 + AT_rich Low_complexity Low_complexity 1 37 0 29 0 0 0 chr9 10861119 10861148 -131410296 + AT_rich Low_complexity Low_complexity 1 29 0 467 280 127 25 chr9 10861429 10861768 -131409676 + L1ME4a LINE L1 5467 5840 -281 280 304 47 12 chr9 10861829 10862000 -131409444 + L1ME4a LINE L1 5944 6120 -1 641 167 80 0 chr9 10862108 10862258 -131409186 + L1MB1 LINE L1 6007 6168 0 1721 124 124 24 chr9 10862635 10862965 -131408479 - THE1B LTR MaLR 0 364 2 261 0 0 0 chr9 10864356 10864385 -131407059 + (A)n Simple_repeat Simple_repeat 1 29 0 1932 208 99 87 chr9 10864518 10865334 -131406110 + LTR1B LTR ERV1 1 826 0 1454 247 100 45 chr9 10865435 10865897 -131405547 + HUERS-P2 LTR ERV1 72 558 -2530 250 237 64 110 chr9 10866229 10866277 -131405167 + L1ME LINE L1 5013 5062 -1084 2151 115 7 0 chr9 10866277 10866573 -131404871 - AluSq SINE Alu -15 298 1 250 237 64 110 chr9 10866573 10866700 -131404744 + L1ME LINE L1 5062 5193 -953 2274 103 3 0 chr9 10866700 10867000 -131404444 - AluSp SINE Alu -12 301 1 250 237 64 110 chr9 10867000 10867169 -131404275 + L1ME LINE L1 5193 5342 -804 333 0 0 0 chr9 10867172 10867209 -131404235 + (CA)n Simple_repeat Simple_repeat 1 37 0 1593 176 126 28 chr9 10867214 10867611 -131403833 + L1MB8 LINE L1 5741 6176 -2 21 36 0 0 chr9 10867624 10867652 -131403792 + AT_rich Low_complexity Low_complexity 1 28 0 4589 77 0 0 chr9 10867693 10868340 -131403104 + L1PA5 LINE L1 5546 6154 0 240 254 136 0 chr9 10868358 10868468 -131402976 + L1ME LINE L1 5523 5647 -523 1567 275 49 45 chr9 10868483 10869151 -131402293 + L1ME3A LINE L1 5499 6169 -1 760 261 94 0 chr9 10869305 10869508 -131401936 - MIR SINE MIR -27 235 14 225 263 136 42 chr9 10869743 10869861 -131401583 + L2 LINE L2 3173 3301 -12 273 224 90 0 chr9 10870821 10870888 -131400556 + LTR33 LTR ERVL 1 73 -448 291 232 30 71 chr9 10871224 10871323 -131400121 - L3 LINE CR1 -113 1464 1370 3231 228 27 28 chr9 10871729 10872622 -131398822 + L1M4 LINE L1 530 1421 -5121 2203 102 3 13 chr9 10872625 10872928 -131398516 - AluSp SINE Alu -13 300 1 2127 187 28 37 chr9 10872946 10873405 -131398039 + LTR9B LTR ERV1 7 461 -183 476 17 0 0 chr9 10873408 10873468 -131397976 + L1PA6 LINE L1 6095 6154 0 21 0 0 0 chr9 10873468 10873489 -131397955 + AT_rich Low_complexity Low_complexity 1 21 0 2574 105 25 0 chr9 10873496 10873858 -131397586 + HUERS-P3 LTR ERV1 2883 3253 -5666 675 227 7 47 chr9 10873861 10874011 -131397433 + HUERS-P3 LTR ERV1 4539 4682 -4237 2577 136 42 10 chr9 10874014 10874419 -131397025 + HUERS-P3 LTR ERV1 4903 5320 -3599 * 3491 197 38 39 chr9 10874406 10875153 -131396291 + HUERS-P3 LTR ERV1 6214 6959 -1960 879 143 22 18 chr9 10875171 10875398 -131396046 + HUERS-P3 LTR ERV1 2383 4320 -560 1355 169 2 12 chr9 10875671 10875925 -131395519 + HUERS-P3 LTR ERV1 7176 8918 0 2998 165 63 31 chr9 10875925 10876543 -131394901 + LTR9B LTR ERV1 7 644 0 1664 269 44 55 chr9 10876547 10877665 -131393779 + L1M4 LINE L1 1422 2648 -3996 195 69 0 0 chr9 10877665 10877694 -131393750 + (TA)n Simple_repeat Simple_repeat 2 30 0 1664 269 44 55 chr9 10877694 10878408 -131393036 + L1M4 LINE L1 2648 3368 -3276 368 272 24 16 chr9 10879030 10879155 -131392289 - MIR SINE MIR 0 262 137 25 31 0 0 chr9 10879716 10879748 -131391696 + AT_rich Low_complexity Low_complexity 1 32 0 25 31 0 0 chr9 10879896 10879928 -131391516 + AT_rich Low_complexity Low_complexity 1 32 0 209 33 33 0 chr9 10879964 10879994 -131391450 + (CA)n Simple_repeat Simple_repeat 2 32 0 336 284 101 39 chr9 10881032 10881370 -131390074 + L1ME4a LINE L1 5555 5913 -208 313 364 43 48 chr9 10881993 10882224 -131389220 - L3 LINE CR1 -995 582 353 242 368 69 7 chr9 10882382 10882526 -131388918 - MIR SINE MIR -74 188 36 26 0 0 0 chr9 10883085 10883111 -131388333 + AT_rich Low_complexity Low_complexity 1 26 0 2040 255 68 20 chr9 10883434 10884123 -131387321 + MER72 LTR ERV1 1 722 0 26 30 0 0 chr9 10884249 10884282 -131387162 + AT_rich Low_complexity Low_complexity 1 33 0 3905 170 36 10 chr9 10884535 10885264 -131386180 - MER4D LTR ERV1 0 903 156 330 257 0 50 chr9 10886606 10886707 -131384737 - MIR SINE MIR -111 151 56 225 291 0 0 chr9 10888059 10888114 -131383330 + GA-rich Low_complexity Low_complexity 3 57 0 319 20 20 20 chr9 10888717 10888766 -131382678 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 2464 4 0 7 chr9 10888871 10889148 -131382296 - AluYa5 SINE Alu -36 275 1 7422 32 1 1 chr9 10889216 10890236 -131381208 + L1PA4 LINE L1 5131 6150 -5 185 284 37 62 chr9 10890238 10890319 -131381125 + MIR SINE MIR 152 230 -32 21 0 0 0 chr9 10890409 10890430 -131381014 + AT_rich Low_complexity Low_complexity 1 21 0 1731 105 8 4 chr9 10890596 10890843 -131380601 - AluSc SINE Alu -4 305 58 226 291 115 61 chr9 10891319 10891484 -131379960 + MLT1L LTR MaLR 369 542 -73 201 189 0 0 chr9 10891572 10891609 -131379835 + L2 LINE L2 3272 3308 -5 394 60 0 0 chr9 10891668 10891718 -131379726 - MADE1 DNA Mariner 0 80 31 22 0 0 0 chr9 10892209 10892231 -131379213 + AT_rich Low_complexity Low_complexity 1 22 0 7710 19 0 0 chr9 10893813 10894962 -131376482 - L1PA4 LINE L1 -8 6147 4999 1139 297 15 10 chr9 10894962 10895370 -131376074 - L1 LINE L1 -3335 2811 2402 28 48 0 0 chr9 10897611 10897653 -131373791 + AT_rich Low_complexity Low_complexity 1 42 0 1905 147 77 18 chr9 10897928 10898268 -131373176 + THE1B LTR MaLR 3 362 -2 11018 94 40 0 chr9 10898270 10899790 -131371654 + THE1B-int LTR MaLR 1 1580 0 1926 130 78 26 chr9 10899791 10900136 -131371308 + THE1B LTR MaLR 2 364 0 263 340 137 26 chr9 10900175 10900554 -131370890 - L2 LINE L2 -826 2488 2068 2534 81 74 15 chr9 10901183 10901555 -131369889 + MLT2A1 LTR ERVL 6 355 -89 387 0 0 0 chr9 10901555 10901598 -131369846 + (TA)n Simple_repeat Simple_repeat 1 43 0 348 24 0 0 chr9 10901597 10901638 -131369806 + (CA)n Simple_repeat Simple_repeat 2 42 0 * 2534 81 74 15 chr9 10901598 10901659 -131369785 + MLT2A1 LTR ERVL 355 422 -22 366 307 92 31 chr9 10901709 10901872 -131369572 + L3 LINE CR1 375 547 -1030 723 161 0 0 chr9 10902399 10902529 -131368915 + L1 LINE L1 4529 4658 -1488 5473 94 47 5 chr9 10902797 10903970 -131367474 - L1PA13 LINE L1 0 6163 4999 25 0 0 0 chr9 10904532 10904557 -131366887 + AT_rich Low_complexity Low_complexity 1 25 0 390 74 0 0 chr9 10904868 10904922 -131366522 + (CA)n Simple_repeat Simple_repeat 1 54 0 2047 97 4 0 chr9 10904955 10905257 -131366187 - AluSc SINE Alu 0 315 13 1466 196 3 25 chr9 10905259 10905544 -131365900 - AluJb SINE Alu -11 301 23 1822 182 100 5 chr9 10905582 10905961 -131365483 + MSTA LTR MaLR 2 416 -12 304 344 114 31 chr9 10906369 10906721 -131364723 + L2 LINE L2 1869 2249 -1065 582 291 98 0 chr9 10906837 10907040 -131364404 - MIR SINE MIR 0 262 40 216 252 54 117 chr9 10907990 10908101 -131363343 + MIR3 SINE MIR 74 177 -31 262 370 68 25 chr9 10911338 10911500 -131359944 + MIR3 SINE MIR 19 187 -21 455 335 24 0 chr9 10912953 10913117 -131358327 - MIR SINE MIR -46 216 49 23 0 0 0 chr9 10913614 10913637 -131357807 + AT_rich Low_complexity Low_complexity 1 23 0 266 298 19 39 chr9 10915571 10915675 -131355769 + MIR SINE MIR 48 149 -113 357 62 0 0 chr9 10915686 10915734 -131355710 + (TG)n Simple_repeat Simple_repeat 1 48 0 276 333 67 22 chr9 10916127 10916262 -131355182 + MIR SINE MIR 79 219 -43 248 271 0 0 chr9 10917562 10917621 -131353823 - MIR3 SINE MIR -12 196 138 335 77 0 19 chr9 10917773 10917825 -131353619 + (GAAA)n Simple_repeat Simple_repeat 2 52 0 21 36 0 0 chr9 10918086 10918114 -131353330 + AT_rich Low_complexity Low_complexity 1 28 0 342 323 90 18 chr9 10918313 10918480 -131352964 + L2 LINE L2 3130 3308 -5 2266 97 3 6 chr9 10918652 10918963 -131352481 + AluSg SINE Alu 1 310 0 1999 33 0 0 chr9 10919826 10920068 -131351376 - L1PA4 LINE L1 -3 6152 5911 1354 170 5 0 chr9 10920319 10920542 -131350902 - AluJb SINE Alu -13 299 76 401 252 191 62 chr9 10920878 10921088 -131350356 - MIR SINE MIR -6 256 20 22 35 0 0 chr9 10921304 10921333 -131350111 + AT_rich Low_complexity Low_complexity 1 29 0 1908 145 7 0 chr9 10922142 10922431 -131349013 - AluSx SINE Alu -20 292 2 1908 200 130 19 chr9 10922783 10923203 -131348241 + MER67D LTR ERV1 3 480 -34 1434 214 26 45 chr9 10923203 10923356 -131348088 + MLT1A2 LTR MaLR 4 158 -216 204 40 0 0 chr9 10923356 10923381 -131348063 + (GAAA)n Simple_repeat Simple_repeat 2 26 0 1434 214 26 45 chr9 10923381 10923605 -131347839 + MLT1A2 LTR MaLR 158 374 0 1908 200 130 19 chr9 10923605 10923645 -131347799 + MER67D LTR ERV1 480 514 0 644 325 42 17 chr9 10923715 10923955 -131347489 - MIR SINE MIR -4 258 13 249 174 61 0 chr9 10924172 10924270 -131347174 + (TA)n Simple_repeat Simple_repeat 1 104 0 2094 133 0 0 chr9 10924414 10924708 -131346736 + AluSg SINE Alu 1 294 -16 231 385 56 7 chr9 10925396 10925539 -131345905 + MIR3 SINE MIR 3 152 -56 358 264 62 0 chr9 10925644 10925788 -131345656 - LTR33A LTR ERVL -2 521 369 1939 121 10 3 chr9 10925948 10926245 -131345199 + AluSg SINE Alu 12 310 0 1457 188 84 10 chr9 10926569 10926925 -131344519 + LTR56 LTR ERV1 86 467 0 23 0 0 0 chr9 10927362 10927385 -131344059 + AT_rich Low_complexity Low_complexity 1 23 0 26 30 0 0 chr9 10928135 10928168 -131343276 + AT_rich Low_complexity Low_complexity 1 33 0 1216 92 8 8 chr9 10929150 10929399 -131342045 + (TTTC)n Simple_repeat Simple_repeat 1 249 0 849 221 16 21 chr9 10930215 10930405 -131341039 + MER5A DNA MER1_type 1 189 0 688 215 116 45 chr9 10930417 10930696 -131340748 - LTR37A LTR ERV1 0 426 121 2044 142 0 3 chr9 10930696 10931007 -131340437 + AluSq SINE Alu 1 310 -3 688 215 116 45 chr9 10931007 10931038 -131340406 - LTR37A LTR ERV1 -305 121 94 180 380 28 19 chr9 10931832 10931940 -131339504 + MIR SINE MIR 42 150 -58 194 0 0 37 chr9 10932202 10932229 -131339215 + (CAAAAA)n Simple_repeat Simple_repeat 2 27 0 525 198 0 19 chr9 10933087 10933193 -131338251 + L1PA16 LINE L1 6054 6157 -9 21 0 0 0 chr9 10933193 10933214 -131338230 + AT_rich Low_complexity Low_complexity 1 21 0 477 0 0 0 chr9 10933515 10933568 -131337876 + (GAAA)n Simple_repeat Simple_repeat 4 56 0 27 0 0 0 chr9 10934788 10934815 -131336629 + AT_rich Low_complexity Low_complexity 1 27 0 186 259 19 0 chr9 10935813 10935867 -131335577 - MIR SINE MIR -104 158 104 390 228 96 101 chr9 10935913 10936132 -131335312 - MIR SINE MIR -42 220 3 828 223 88 0 chr9 10936175 10936368 -131335076 + MER63A DNA MER1_type 1 210 0 184 298 20 126 chr9 10936540 10936691 -131334753 + MIR3 SINE MIR 10 144 -64 23 68 0 0 chr9 10938222 10938266 -131333178 + AT_rich Low_complexity Low_complexity 1 44 0 180 329 14 0 chr9 10938359 10938432 -131333012 - MER5A DNA MER1_type -45 144 71 2393 246 35 35 chr9 10939257 10940122 -131331322 + L1MC3 LINE L1 4246 5110 -1036 24 53 0 0 chr9 10940282 10940320 -131331124 + AT_rich Low_complexity Low_complexity 1 38 0 607 220 181 6 chr9 10940375 10940669 -131330775 + L1MC3 LINE L1 5125 5487 -838 180 0 0 0 chr9 10940669 10940689 -131330755 + (TAAAA)n Simple_repeat Simple_repeat 1 20 0 607 220 181 6 chr9 10940689 10940722 -131330722 + L1MC3 LINE L1 5487 5513 -812 646 160 0 0 chr9 10940722 10940822 -131330622 - LTR12 LTR ERV1 0 714 615 300 273 10 0 chr9 10940824 10940923 -131330521 - LTR30 LTR ERV1 -79 643 544 687 155 38 113 chr9 10940923 10941136 -131330308 - LTR12 LTR ERV1 -437 277 81 1802 183 158 7 chr9 10941136 10941584 -131329860 + L1MC3 LINE L1 5564 6079 -1706 949 192 20 15 chr9 10941590 10941788 -131329656 + L1MC3 LINE L1 6169 6367 -1418 620 189 45 0 chr9 10941787 10941919 -131329525 + L1MC3 LINE L1 7481 7618 -167 * 37 62 0 0 chr9 10943828 10943893 -131327551 + AT_rich Low_complexity Low_complexity 1 65 0 422 235 10 10 chr9 10943922 10944020 -131327424 + L2 LINE L2 3216 3313 0 242 351 45 22 chr9 10945714 10945848 -131325596 + MER5A DNA MER1_type 7 143 -46 2230 118 21 3 chr9 10945870 10946210 -131325234 - L1PA15 LINE L1 -6 6159 5814 469 283 135 80 chr9 10946566 10946604 -131324840 - L3 LINE CR1 -3 1574 1540 2111 127 0 16 chr9 10946604 10946919 -131324525 + AluSg SINE Alu 1 310 0 469 283 135 80 chr9 10946919 10947332 -131324112 - L3 LINE CR1 -37 1540 1098 1500 203 58 29 chr9 10949729 10950086 -131321358 + MLT1A1 LTR MaLR 6 428 0 435 19 0 0 chr9 10951186 10951238 -131320206 + (CA)n Simple_repeat Simple_repeat 2 53 0 1403 185 129 16 chr9 10952031 10952334 -131319110 - MER1B DNA MER1_type 0 337 1 248 314 26 103 chr9 10952343 10952499 -131318945 + MIR SINE MIR 48 191 -71 553 312 83 5 chr9 10953002 10953207 -131318237 - MER58A DNA MER1_type -2 222 2 185 156 0 22 chr9 10954042 10954087 -131317357 + (CA)n Simple_repeat Simple_repeat 1 44 0 245 363 41 29 chr9 10957026 10957197 -131314247 + MIR SINE MIR 86 258 -4 399 196 83 43 chr9 10957198 10957335 -131314109 + L1MB7 LINE L1 6018 6137 -43 1021 233 16 12 chr9 10957335 10957613 -131313831 + AluJo SINE Alu 38 316 0 395 214 111 8 chr9 10959084 10959210 -131312234 + MER104 DNA Tc2 5 143 -37 369 0 0 0 chr9 10959293 10959334 -131312110 + (CA)n Simple_repeat Simple_repeat 2 42 0 4999 187 26 7 chr9 10960934 10962492 -131308952 + L1PA16 LINE L1 4591 6175 0 21 0 0 0 chr9 10962577 10962598 -131308846 + AT_rich Low_complexity Low_complexity 1 21 0 252 86 0 0 chr9 10962894 10962929 -131308515 + (T)n Simple_repeat Simple_repeat 1 35 0 11431 34 2 0 chr9 10964738 10966247 -131305197 - L1PA4 LINE L1 -624 5531 4018 5286 38 0 0 chr9 10966247 10966900 -131304544 + L1PA4 LINE L1 5519 6175 0 220 312 97 32 chr9 10967117 10967210 -131304234 - MIR SINE MIR -111 151 53 684 251 25 25 chr9 10967544 10967743 -131303701 + MIR SINE MIR 2 200 -62 281 189 19 0 chr9 10967744 10967797 -131303647 + L1PA16 LINE L1 5858 5911 -255 227 250 22 22 chr9 10968305 10968397 -131303047 - MER103 DNA DNA -63 103 12 422 293 183 11 chr9 10968596 10968787 -131302657 - MIR SINE MIR -20 242 19 316 346 63 0 chr9 10969074 10969233 -131302211 - MIR SINE MIR 0 262 94 26 0 0 0 chr9 10969374 10969400 -131302044 + AT_rich Low_complexity Low_complexity 1 26 0 26 64 0 0 chr9 10970903 10970950 -131300494 + AT_rich Low_complexity Low_complexity 1 47 0 29 0 0 0 chr9 10971747 10971776 -131299668 + AT_rich Low_complexity Low_complexity 1 29 0 2981 117 6 26 chr9 10972232 10972730 -131298714 + L1MB3 LINE L1 5696 6183 0 275 326 11 21 chr9 10973868 10973963 -131297481 + MIR3 SINE MIR 101 194 -14 319 192 164 14 chr9 10974258 10974331 -131297113 - MLT1I LTR MaLR -245 164 81 216 0 0 0 chr9 10974387 10974411 -131297033 + (A)n Simple_repeat Simple_repeat 1 24 0 435 311 90 6 chr9 10975855 10976032 -131295412 + MIR SINE MIR 65 256 -6 229 309 82 0 chr9 10976015 10976125 -131295319 + L2 LINE L2 3187 3305 -8 * 253 313 20 27 chr9 10976311 10976461 -131294983 + MLT1I LTR MaLR 1 149 -260 1864 171 13 19 chr9 10976556 10976931 -131294513 - L1MA8 LINE L1 -3 6288 5916 1717 155 19 7 chr9 10976932 10977241 -131294203 + L1MA8 LINE L1 5588 5900 -391 223 347 96 30 chr9 10978596 10978763 -131292681 - MIR SINE MIR -15 247 70 238 328 67 22 chr9 10979396 10979530 -131291914 + MIR SINE MIR 63 202 -60 2806 13 0 0 chr9 10979600 10979911 -131291533 - AluYa5 SINE Alu 0 311 1 529 275 28 3 chr9 10981578 10981789 -131289655 - MIR SINE MIR -37 225 9 306 289 52 39 chr9 10981894 10982065 -131289379 + MER5A DNA MER1_type 4 187 -2 408 241 15 3 chr9 10982098 10982233 -131289211 - MER5A DNA MER1_type 0 189 10 283 289 87 71 chr9 10982296 10982463 -131288981 - MER5A DNA MER1_type -11 167 12 189 132 0 0 chr9 10982845 10982883 -131288561 + (TC)n Simple_repeat Simple_repeat 2 39 0 257 244 12 0 chr9 10982913 10982999 -131288445 + (TA)n Simple_repeat Simple_repeat 2 88 0 829 226 122 19 chr9 10984735 10985054 -131286390 + Charlie4a DNA MER1_type 119 508 0 653 282 235 19 chr9 10985058 10985556 -131285888 + L2 LINE L2 2703 3313 0 1092 226 147 48 chr9 10985728 10986144 -131285300 - MLT1C LTR MaLR 0 467 11 342 0 0 0 chr9 10986570 10986608 -131284836 + (TCTA)n Simple_repeat Simple_repeat 1 38 0 254 229 31 0 chr9 10986624 10986720 -131284724 + (TA)n Simple_repeat Simple_repeat 2 100 0 204 371 9 26 chr9 10986777 10986893 -131284551 + MIR SINE MIR 149 262 0 671 334 127 30 chr9 10986915 10987241 -131284203 + L3 LINE CR1 810 1103 -474 306 0 0 0 chr9 10987241 10987275 -131284169 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 671 334 127 30 chr9 10987275 10987523 -131283921 + L3 LINE CR1 1103 1440 -137 197 293 130 32 chr9 10987532 10987655 -131283789 - MIR SINE MIR -4 258 124 1235 191 62 57 chr9 10987883 10988306 -131283138 - LTR37A LTR ERV1 0 426 2 407 273 22 14 chr9 10988691 10988830 -131282614 - MIR SINE MIR -50 212 73 26 74 0 0 chr9 10989025 10989079 -131282365 + AT_rich Low_complexity Low_complexity 1 54 0 25 65 0 0 chr9 10989341 10989387 -131282057 + AT_rich Low_complexity Low_complexity 1 46 0 2200 110 0 0 chr9 10990399 10990689 -131280755 + AluSx SINE Alu 1 290 -22 2139 92 16 13 chr9 10993761 10993996 -131277448 - AluSg SINE Alu 0 310 123 315 0 0 0 chr9 10993996 10994031 -131277413 + (TG)n Simple_repeat Simple_repeat 2 36 0 2139 92 16 13 chr9 10994031 10994151 -131277293 - AluSg SINE Alu -187 123 5 333 0 0 0 chr9 10994800 10994837 -131276607 + (CA)n Simple_repeat Simple_repeat 2 38 0 1116 258 82 55 chr9 10995049 10995596 -131275848 + MER68 LTR ERV1 1 562 0 2436 172 29 2 chr9 10996567 10997020 -131274424 + MLT1C LTR MaLR 1 465 -2 24 0 0 0 chr9 10997230 10997254 -131274190 + AT_rich Low_complexity Low_complexity 1 24 0 180 338 56 28 chr9 10997714 10997927 -131273517 + L2 LINE L2 1880 2098 -1216 21 36 0 0 chr9 10998184 10998212 -131273232 + AT_rich Low_complexity Low_complexity 1 28 0 210 340 111 14 chr9 10999676 10999820 -131271624 + MIR SINE MIR 105 262 0 898 247 85 62 chr9 11001197 11001508 -131269936 + MLT1F LTR MaLR 3 328 -239 4534 268 13 22 chr9 11002792 11004931 -131266513 + L1PA16 LINE L1 2182 4249 -3335 7994 11 0 0 chr9 11004931 11006088 -131265356 + L1HS LINE L1 4999 6155 0 8408 213 26 28 chr9 11006094 11006790 -131264654 + L1PA16 LINE L1 4252 4948 -2656 230 0 33 0 chr9 11006790 11006820 -131264624 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 8408 213 26 28 chr9 11006820 11008703 -131262741 + L1PA16 LINE L1 4948 6823 -781 17718 31 1 0 chr9 11008703 11011661 -131259783 + L1PA3 LINE L1 3220 6155 0 8408 213 26 28 chr9 11011661 11012436 -131259008 + L1PA16 LINE L1 6823 7598 -6 23 33 0 0 chr9 11012471 11012501 -131258943 + AT_rich Low_complexity Low_complexity 1 30 0 270 293 0 57 chr9 11012599 11012705 -131258739 + MLT1F1 LTR MaLR 1 100 -467 22 0 0 0 chr9 11012705 11012727 -131258717 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr9 11013419 11013443 -131258001 + AT_rich Low_complexity Low_complexity 1 24 0 260 171 0 0 chr9 11013655 11013696 -131257748 - MER8 DNA MER2_type -2 237 197 * 2325 156 10 5 chr9 11013692 11014076 -131257368 + Tigger2 DNA MER2_type 2328 2713 -5 195 42 0 0 chr9 11014524 11014548 -131256896 + (TA)n Simple_repeat Simple_repeat 2 25 0 364 129 0 24 chr9 11014564 11014649 -131256795 + (CATA)n Simple_repeat Simple_repeat 2 84 0 465 256 51 51 chr9 11014650 11014826 -131256618 - L2 LINE L2 -4 3309 3134 676 45 0 0 chr9 11015638 11015727 -131255717 - L1PA2 LINE L1 -1 6154 6066 767 11 0 0 chr9 11015727 11015814 -131255630 + L1P1 LINE L1 5650 5736 -419 2043 133 3 0 chr9 11015971 11016265 -131255179 + AluSq SINE Alu 1 295 -18 276 290 130 23 chr9 11016686 11016817 -131254627 - L2 LINE L2 -2 3311 3167 703 241 24 0 chr9 11017052 11017218 -131254226 + MER5B DNA MER1_type 8 177 -1 191 418 11 0 chr9 11017974 11018065 -131253379 + MIR SINE MIR 7 98 -164 2258 112 0 0 chr9 11018097 11018402 -131253042 - AluSg SINE Alu -5 305 1 22 0 0 0 chr9 11018408 11018430 -131253014 + AT_rich Low_complexity Low_complexity 1 22 0 358 314 44 25 chr9 11018449 11018608 -131252836 + L1ME LINE L1 5611 5772 -349 3205 81 5 0 chr9 11018608 11019042 -131252402 + L1PA5 LINE L1 5716 6151 -3 200 135 0 96 chr9 11019045 11019097 -131252347 + (A)n Simple_repeat Simple_repeat 1 47 0 1287 120 0 6 chr9 11019433 11019616 -131251828 - AluSc SINE Alu -11 298 117 2333 83 3 3 chr9 11019630 11019930 -131251514 - AluSg SINE Alu -6 304 5 1891 237 147 20 chr9 11019945 11020862 -131250582 - L1ME1 LINE L1 0 6166 5170 333 140 0 0 chr9 11020859 11020916 -131250528 + L1MA7 LINE L1 5773 5829 -483 * 2188 80 7 0 chr9 11020917 11021193 -131250251 + AluSp SINE Alu 1 278 -35 2365 150 32 13 chr9 11021209 11021676 -131249768 + L1MA7 LINE L1 5815 6290 -1 392 250 100 5 chr9 11021683 11021883 -131249561 - L1ME1 LINE L1 -954 5192 4974 14380 197 92 11 chr9 11021923 11024448 -131246996 - L1PA13 LINE L1 -14 6791 4474 417 20 0 0 chr9 11024448 11024498 -131246946 + (TG)n Simple_repeat Simple_repeat 1 50 0 14380 197 92 11 chr9 11024498 11026377 -131245067 - L1PA13 LINE L1 -2331 4474 2750 207 0 0 0 chr9 11026377 11026400 -131245044 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1766 147 4 7 chr9 11026402 11026681 -131244763 - AluSg SINE Alu -32 278 1 14380 197 92 11 chr9 11026681 11026741 -131244703 - L1PA13 LINE L1 -4055 2750 1874 357 328 8 0 chr9 11026742 11026867 -131244577 - L1ME1 LINE L1 -2299 3847 3722 * 3553 236 9 9 chr9 11026862 11027599 -131243845 + L1M4b LINE L1 6 742 -4586 242 100 40 0 chr9 11027599 11027649 -131243795 + L1MA4 LINE L1 707 758 -4570 2388 186 52 14 chr9 11027736 11028387 -131243057 + L1MA4 LINE L1 732 1398 -4065 888 216 0 10 chr9 11028385 11028589 -131242855 + L1MA4 LINE L1 2340 2541 -3787 * 1190 177 33 4 chr9 11028581 11028824 -131242620 + L1MA4 LINE L1 3524 3773 -2555 5630 190 28 10 chr9 11028829 11030974 -131240470 + L1MA4 LINE L1 4049 6231 -251 279 215 0 0 chr9 11030975 11031040 -131240404 + (TA)n Simple_repeat Simple_repeat 1 65 0 225 143 0 0 chr9 11031040 11031082 -131240362 - LTR66 LTR ERVL -171 439 398 384 103 0 0 chr9 11031083 11031141 -131240303 + (CATATA)n Simple_repeat Simple_repeat 3 60 0 226 173 19 0 chr9 11031351 11031403 -131240041 + (TCTA)n Simple_repeat Simple_repeat 1 53 0 23 0 0 0 chr9 11031476 11031499 -131239945 + AT_rich Low_complexity Low_complexity 1 23 0 208 278 37 0 chr9 11034256 11034364 -131237080 + (TA)n Simple_repeat Simple_repeat 2 113 0 231 206 40 8 chr9 11034377 11034503 -131236941 + (TA)n Simple_repeat Simple_repeat 1 130 0 2575 36 0 0 chr9 11037566 11037867 -131233577 + AluY SINE Alu 1 301 -10 593 274 43 43 chr9 11038153 11038387 -131233057 + L1M4b LINE L1 719 952 -5278 2259 72 14 0 chr9 11038783 11039074 -131232370 + AluY SINE Alu 1 295 -16 226 247 14 55 chr9 11039360 11039433 -131232011 + L2 LINE L2 3235 3304 -9 1558 140 73 62 chr9 11039575 11039894 -131231550 + THE1B LTR MaLR 1 326 -38 2357 70 3 0 chr9 11039894 11040196 -131231248 - AluY SINE Alu -8 303 1 1558 140 73 62 chr9 11040196 11040234 -131231210 + THE1B LTR MaLR 326 362 -2 27 49 0 0 chr9 11040759 11040800 -131230644 + AT_rich Low_complexity Low_complexity 1 41 0 303 282 39 19 chr9 11041711 11041814 -131229630 - MIR SINE MIR -102 160 56 2001 180 64 10 chr9 11042527 11042932 -131228512 + MSTB1 LTR MaLR 1 427 -5 264 323 91 38 chr9 11043556 11043742 -131227702 + MIR SINE MIR 67 262 0 22 0 0 0 chr9 11044609 11044631 -131226813 + AT_rich Low_complexity Low_complexity 1 22 0 370 370 36 51 chr9 11045691 11046080 -131225364 - L2 LINE L2 -436 2878 2496 1005 184 53 0 chr9 11047049 11047255 -131224189 - MER20 DNA MER1_type 0 219 3 340 374 63 35 chr9 11047474 11047792 -131223652 + HAL1 LINE L1 1444 1770 -737 514 282 159 9 chr9 11047975 11048195 -131223249 - MIR SINE MIR -1 261 9 409 250 32 32 chr9 11048675 11048799 -131222645 + L2 LINE L2 2765 2888 -426 729 294 68 39 chr9 11048843 11049536 -131221908 + L1 LINE L1 3529 4241 -1905 388 310 73 67 chr9 11049587 11050036 -131221408 + L1 LINE L1 4326 4777 -1369 261 231 96 29 chr9 11050106 11050210 -131221234 + L1 LINE L1 4904 5014 -1132 234 0 0 0 chr9 11050316 11050342 -131221102 + (A)n Simple_repeat Simple_repeat 1 26 0 2036 133 3 19 chr9 11050347 11050663 -131220781 + AluY SINE Alu 1 311 0 254 222 12 37 chr9 11050856 11050937 -131220507 - MIR SINE MIR -1 261 183 338 324 58 24 chr9 11050972 11051264 -131220180 + L1ME LINE L1 5366 5667 -497 247 268 74 121 chr9 11051296 11051527 -131219917 + MIR SINE MIR 26 245 -17 1903 136 7 0 chr9 11052516 11052828 -131218616 + AluSx SINE Alu 1 314 0 304 220 17 0 chr9 11052889 11052948 -131218496 + L2 LINE L2 3201 3260 -12 184 344 0 0 chr9 11053166 11053230 -131218214 + MIR SINE MIR 178 241 -21 24 0 0 0 chr9 11053444 11053468 -131217976 + AT_rich Low_complexity Low_complexity 1 24 0 541 308 85 27 chr9 11053809 11054033 -131217411 - MIR SINE MIR -6 256 20 338 87 0 0 chr9 11055835 11055881 -131215563 + LTR42 LTR ERVL 363 408 -87 208 351 88 40 chr9 11056154 11056302 -131215142 + L2 LINE L2 2585 2739 -575 22 0 0 0 chr9 11056701 11056723 -131214721 + AT_rich Low_complexity Low_complexity 1 22 0 287 260 144 0 chr9 11057202 11057306 -131214138 - MLT1H LTR MaLR 0 549 431 305 258 21 32 chr9 11057362 11057455 -131213989 + LTR42 LTR ERVL 1 92 -403 1149 176 10 10 chr9 11057464 11057669 -131213775 + LTR42 LTR ERVL 291 495 0 580 287 111 42 chr9 11057690 11057979 -131213465 - MLT1H LTR MaLR -228 321 13 183 363 72 85 chr9 11057993 11058381 -131213063 - L2 LINE L2 -78 3194 2812 1886 103 18 70 chr9 11058458 11058787 -131212657 + AluSx SINE Alu 1 312 0 2252 123 0 0 chr9 11058809 11059117 -131212327 + AluSq SINE Alu 1 308 -5 207 0 0 0 chr9 11059438 11059461 -131211983 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 21 0 0 0 chr9 11059592 11059613 -131211831 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr9 11059651 11059686 -131211758 + AT_rich Low_complexity Low_complexity 1 35 0 715 203 14 7 chr9 11060668 11060816 -131210628 - MLT1D LTR MaLR 0 505 357 225 0 0 0 chr9 11060819 11060844 -131210600 + (A)n Simple_repeat Simple_repeat 1 25 0 271 391 96 10 chr9 11061245 11061442 -131210002 - L3b LINE CR1 -69 1514 1301 22 0 0 0 chr9 11062230 11062252 -131209192 + AT_rich Low_complexity Low_complexity 1 22 0 261 0 0 0 chr9 11062691 11062720 -131208724 + (TA)n Simple_repeat Simple_repeat 2 30 0 * 486 0 0 0 chr9 11062719 11062773 -131208671 + (GA)n Simple_repeat Simple_repeat 2 55 0 206 276 35 0 chr9 11062843 11062901 -131208543 - MIR SINE MIR -123 139 80 206 289 82 41 chr9 11063149 11063246 -131208198 - MIR SINE MIR -1 261 161 1333 107 39 73 chr9 11063315 11063548 -131207896 - AluSq SINE Alu -13 300 76 292 233 0 0 chr9 11063615 11063675 -131207769 + MIR SINE MIR 103 162 -100 570 246 59 21 chr9 11063681 11063868 -131207576 + MLT1J LTR MaLR 7 200 -311 1079 236 52 35 chr9 11064156 11064524 -131206920 + L1ME1 LINE L1 5769 6142 -24 311 275 28 18 chr9 11064676 11064785 -131206659 + MIR SINE MIR 147 256 -6 1246 256 28 19 chr9 11065110 11065470 -131205974 + MLT1A1 LTR MaLR 1 363 -2 320 332 22 74 chr9 11067900 11068129 -131203315 - MIR SINE MIR -19 243 27 267 31 0 0 chr9 11068277 11068309 -131203135 + (CA)n Simple_repeat Simple_repeat 1 32 0 904 209 33 33 chr9 11068669 11068884 -131202560 + MER20 DNA MER1_type 1 215 -4 226 42 0 167 chr9 11069906 11069954 -131201490 - L1M2 LINE L1 -491 5821 5782 345 195 11 11 chr9 11069970 11070057 -131201387 - L1M2 LINE L1 -507 5793 5707 631 175 0 0 chr9 11070057 11070173 -131201271 + L1MA7 LINE L1 6170 6289 -2 225 239 65 33 chr9 11070227 11070319 -131201125 + L1ME4a LINE L1 5992 6086 -35 775 328 82 29 chr9 11070321 11070812 -131200632 + L3 LINE CR1 1052 1568 -9 261 57 0 0 chr9 11071038 11071073 -131200371 + (TA)n Simple_repeat Simple_repeat 2 36 0 831 192 15 56 chr9 11071190 11071388 -131200056 + MLT1A1 LTR MaLR 165 354 -11 21 0 0 0 chr9 11071543 11071564 -131199880 + AT_rich Low_complexity Low_complexity 1 21 0 201 158 0 26 chr9 11071625 11071663 -131199781 + MIR SINE MIR 219 255 -7 215 347 48 9 chr9 11071765 11071914 -131199530 + MER5A DNA MER1_type 1 164 -25 435 38 0 0 chr9 11073741 11073794 -131197650 + (TTTTA)n Simple_repeat Simple_repeat 2 54 0 1833 149 7 3 chr9 11073796 11074078 -131197366 - AluSx SINE Alu -29 283 1 22 88 0 0 chr9 11074127 11074184 -131197260 + AT_rich Low_complexity Low_complexity 1 57 0 384 384 83 35 chr9 11074246 11074644 -131196800 - L2 LINE L2 -1 3271 2855 240 328 71 74 chr9 11074970 11075281 -131196163 - L2 LINE L2 -880 2434 2125 671 262 52 98 chr9 11075349 11075716 -131195728 - L1ME2 LINE L1 0 6164 5815 628 225 0 48 chr9 11075713 11075900 -131195544 - L1M4 LINE L1 -2413 3733 3556 * 26 0 0 0 chr9 11076092 11076118 -131195326 + AT_rich Low_complexity Low_complexity 1 26 0 21 36 0 0 chr9 11076240 11076268 -131195176 + AT_rich Low_complexity Low_complexity 1 28 0 2374 41 0 0 chr9 11076606 11076899 -131194545 + AluY SINE Alu 1 293 -18 291 191 0 0 chr9 11079007 11079075 -131192369 + (TA)n Simple_repeat Simple_repeat 1 68 0 212 169 51 0 chr9 11079096 11079155 -131192289 + (TA)n Simple_repeat Simple_repeat 1 62 0 318 106 0 0 chr9 11079170 11079217 -131192227 + (TA)n Simple_repeat Simple_repeat 2 48 0 1813 196 3 0 chr9 11079987 11080323 -131191121 + L1PB4 LINE L1 5808 6144 -12 284 267 145 23 chr9 11081738 11081869 -131189575 + MLT1J2 LTR MaLR 132 278 -172 1491 169 46 42 chr9 11082642 11082949 -131188495 - AluSq SINE Alu 0 308 1 686 314 59 26 chr9 11083711 11084172 -131187272 + L1ME LINE L1 5321 5796 -374 23 86 0 0 chr9 11084185 11084243 -131187201 + AT_rich Low_complexity Low_complexity 1 58 0 350 235 51 0 chr9 11084272 11084370 -131187074 + MER20 DNA MER1_type 113 215 -4 697 210 126 29 chr9 11084415 11084653 -131186791 + MER96B DNA MER1_type? 156 416 -1 210 174 0 22 chr9 11085653 11085699 -131185745 + (CA)n Simple_repeat Simple_repeat 2 46 0 243 299 97 8 chr9 11085862 11085996 -131185448 - MER117 DNA MER1_type -51 146 1 27 49 0 0 chr9 11086744 11086785 -131184659 + AT_rich Low_complexity Low_complexity 1 41 0 404 233 47 40 chr9 11087062 11087212 -131184232 + HAL1b LINE L1 1196 1346 -2 33 25 0 0 chr9 11088005 11088045 -131183399 + AT_rich Low_complexity Low_complexity 1 40 0 29 60 0 0 chr9 11088342 11088392 -131183052 + AT_rich Low_complexity Low_complexity 1 50 0 405 260 89 45 chr9 11088619 11088865 -131182579 - MIR SINE MIR -3 259 3 30 0 0 0 chr9 11088964 11088994 -131182450 + AT_rich Low_complexity Low_complexity 1 30 0 194 114 0 23 chr9 11089300 11089344 -131182100 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 229 313 0 0 chr9 11089635 11089702 -131181742 + (CA)n Simple_repeat Simple_repeat 1 67 0 22 0 0 0 chr9 11089890 11089912 -131181532 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr9 11090529 11090558 -131180886 + AT_rich Low_complexity Low_complexity 1 29 0 197 233 0 17 chr9 11091550 11091610 -131179834 + CT-rich Low_complexity Low_complexity 3 61 0 1652 177 3 21 chr9 11091756 11092088 -131179356 + AluSx SINE Alu 1 327 0 549 64 13 0 chr9 11092736 11092814 -131178630 - L1PA2 LINE L1 -3 6152 6074 2511 150 7 25 chr9 11093030 11093469 -131177975 + Tigger2a DNA MER2_type 4 434 0 22 0 0 0 chr9 11093515 11093537 -131177907 + AT_rich Low_complexity Low_complexity 1 22 0 26 88 0 0 chr9 11093557 11093625 -131177819 + AT_rich Low_complexity Low_complexity 1 68 0 212 191 60 71 chr9 11094288 11094372 -131177072 - MIR SINE MIR 0 262 180 1142 315 77 55 chr9 11094470 11095066 -131176378 - MER45C DNA AcHobo -343 610 2 180 111 0 0 chr9 11096080 11096107 -131175337 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 317 199 43 21 chr9 11097082 11097223 -131174221 + (TA)n Simple_repeat Simple_repeat 2 145 0 6541 42 0 0 chr9 11097440 11098236 -131173208 + L1PA4 LINE L1 5357 6152 -3 890 250 15 10 chr9 11098508 11098712 -131172732 + MLT1C LTR MaLR 263 467 0 851 70 8 0 chr9 11098765 11098893 -131172551 + (TCTA)n Simple_repeat Simple_repeat 3 131 0 201 171 49 0 chr9 11099901 11099942 -131171502 + G-rich Low_complexity Low_complexity 3 45 0 365 253 0 23 chr9 11099970 11100057 -131171387 + L2 LINE L2 3186 3270 -2 1797 177 39 52 chr9 11100122 11100330 -131171114 + MSTB2 LTR MaLR 1 210 -247 306 0 0 0 chr9 11100330 11100364 -131171080 + (GA)n Simple_repeat Simple_repeat 2 35 0 * 351 0 0 0 chr9 11100363 11100402 -131171042 + (TG)n Simple_repeat Simple_repeat 1 39 0 1797 177 39 52 chr9 11100364 11100656 -131170788 + MSTB2 LTR MaLR 210 457 0 1504 103 0 5 chr9 11102360 11102563 -131168881 + AluSx SINE Alu 17 218 -94 47 0 0 0 chr9 11102574 11102621 -131168823 + AT_rich Low_complexity Low_complexity 1 47 0 1696 178 28 0 chr9 11105300 11105621 -131165823 + L1MC1 LINE L1 5986 6315 -18 2538 147 43 9 chr9 11106506 11106947 -131164497 + MER65C LTR ERV1 1 456 -5 1259 258 101 75 chr9 11107218 11107979 -131163465 + MER20B DNA MER1_type 3 783 0 2361 184 93 77 chr9 11108142 11108763 -131162681 + MER39 LTR ERV1 75 705 -2 273 173 0 0 chr9 11108908 11108960 -131162484 + L1ME1 LINE L1 3680 3731 -2415 2980 253 49 35 chr9 11109094 11110235 -131161209 + L1ME1 LINE L1 5007 6161 -5 227 300 29 0 chr9 11110872 11110942 -131160502 - L2 LINE L2 -5 3267 3196 257 167 19 0 chr9 11111277 11111331 -131160113 + GA-rich Low_complexity Low_complexity 1 55 0 425 299 147 5 chr9 11112268 11112472 -131158972 + MIR SINE MIR 28 260 -2 283 378 45 0 chr9 11112657 11112768 -131158676 + L2 LINE L2 3145 3260 -12 184 296 56 0 chr9 11113831 11113885 -131157559 - L2 LINE L2 -4 3268 3212 204 250 0 0 chr9 11114004 11114052 -131157392 + (TAAA)n Simple_repeat Simple_repeat 1 48 0 1787 149 4 0 chr9 11114615 11114916 -131156528 - AluSq SINE Alu 0 302 1 1007 136 13 0 chr9 11115138 11115293 -131156151 + AluSp SINE Alu 152 308 -5 31 26 0 0 chr9 11115293 11115331 -131156113 + AT_rich Low_complexity Low_complexity 1 38 0 2107 141 45 17 chr9 11116219 11116573 -131154871 + THE1B LTR MaLR 1 364 0 186 71 0 0 chr9 11116885 11116913 -131154531 + (A)n Simple_repeat Simple_repeat 1 28 0 24 0 0 0 chr9 11118254 11118278 -131153166 + AT_rich Low_complexity Low_complexity 1 24 0 280 223 43 0 chr9 11119154 11119273 -131152171 + (TA)n Simple_repeat Simple_repeat 1 124 0 268 267 91 61 chr9 11119577 11119742 -131151702 - MIR SINE MIR -30 232 63 21 0 0 0 chr9 11119773 11119794 -131151650 + AT_rich Low_complexity Low_complexity 1 21 0 342 276 80 75 chr9 11119832 11120031 -131151413 + MIR SINE MIR 63 262 0 769 265 87 107 chr9 11120072 11120152 -131151292 + MLT1G1 LTR MaLR 6 86 -509 1760 141 87 14 chr9 11120152 11120507 -131150937 + L1MA7 LINE L1 5911 6291 0 769 265 87 107 chr9 11120507 11120864 -131150580 + MLT1G1 LTR MaLR 86 434 -161 21 57 0 0 chr9 11120943 11120978 -131150466 + AT_rich Low_complexity Low_complexity 1 35 0 264 219 31 0 chr9 11120978 11121042 -131150402 + MLT1G1 LTR MaLR 522 587 -8 2161 118 3 0 chr9 11121160 11121456 -131149988 - AluSx SINE Alu -15 297 1 5047 130 60 24 chr9 11123553 11124249 -131147195 - Tigger3b DNA MER2_type -1799 1229 490 1907 151 6 62 chr9 11124249 11124606 -131146838 + MER1B DNA MER1_type 1 337 0 5047 130 60 24 chr9 11124606 11124831 -131146613 - Tigger3b DNA MER2_type -2538 490 275 554 194 10 0 chr9 11124833 11124931 -131146513 - Tigger3b DNA MER2_type -1132 99 1 250 310 22 92 chr9 11125115 11125299 -131146145 + L2 LINE L2 2868 3038 -234 186 310 220 20 chr9 11125410 11125510 -131145934 + L2 LINE L2 3137 3256 -16 189 107 0 0 chr9 11127117 11127145 -131144299 + (TC)n Simple_repeat Simple_repeat 1 28 0 22 35 0 0 chr9 11127209 11127238 -131144206 + AT_rich Low_complexity Low_complexity 1 29 0 2458 61 0 6 chr9 11127384 11127697 -131143747 - AluY SINE Alu 0 311 1 322 244 56 0 chr9 11128459 11128549 -131142895 - MER53 DNA DNA -93 96 2 309 281 22 0 chr9 11129353 11129442 -131142002 + L1MC4 LINE L1 6614 6704 -1338 198 103 0 0 chr9 11129442 11129471 -131141973 + (TA)n Simple_repeat Simple_repeat 1 29 0 26 30 0 0 chr9 11130541 11130574 -131140870 + AT_rich Low_complexity Low_complexity 1 33 0 407 330 91 17 chr9 11130673 11130903 -131140541 - MIR SINE MIR -12 250 4 425 353 8 0 chr9 11130966 11131099 -131140345 + MIR SINE MIR 16 149 -59 2154 119 42 33 chr9 11131199 11131560 -131139884 + THE1B LTR MaLR 1 364 0 10394 103 33 40 chr9 11131560 11133150 -131138294 + THE1B-int LTR MaLR 1 1580 0 2093 134 42 28 chr9 11133150 11133509 -131137935 + THE1B LTR MaLR 1 364 0 392 263 52 36 chr9 11133717 11133888 -131137556 + MLT1H LTR MaLR 330 501 -48 1078 175 0 0 chr9 11133888 11134071 -131137373 - MER58A DNA MER1_type 0 224 42 265 207 0 0 chr9 11134137 11134195 -131137249 + MLT1H LTR MaLR 491 548 -1 255 274 0 0 chr9 11134471 11134533 -131136911 + (CA)n Simple_repeat Simple_repeat 1 62 0 21 36 0 0 chr9 11134687 11134715 -131136729 + AT_rich Low_complexity Low_complexity 1 28 0 2229 106 3 10 chr9 11135282 11135594 -131135850 + AluSg SINE Alu 1 310 0 1281 205 28 59 chr9 11136372 11136660 -131134784 + AluJo SINE Alu 1 279 -33 345 47 0 0 chr9 11136667 11136710 -131134734 + (TAA)n Simple_repeat Simple_repeat 2 44 0 712 178 82 0 chr9 11137284 11137430 -131134014 - MER20 DNA MER1_type -61 158 1 224 224 0 0 chr9 11137743 11137792 -131133652 + (TATG)n Simple_repeat Simple_repeat 4 52 0 21 71 0 0 chr9 11138585 11138627 -131132817 + AT_rich Low_complexity Low_complexity 1 42 0 22 35 0 0 chr9 11139208 11139237 -131132207 + AT_rich Low_complexity Low_complexity 1 29 0 1231 172 84 56 chr9 11139248 11139498 -131131946 - AluJo SINE Alu -55 257 1 33 66 0 0 chr9 11139568 11139629 -131131815 + AT_rich Low_complexity Low_complexity 1 61 0 2295 117 0 0 chr9 11139907 11140215 -131131229 - AluSx SINE Alu -4 308 1 21 0 0 0 chr9 11190257 11190278 -131081166 + AT_rich Low_complexity Low_complexity 1 21 0 2191 193 62 32 chr9 11190325 11190858 -131080586 - L1MB8 LINE L1 -5 6173 5625 318 325 9 18 chr9 11192416 11192530 -131078914 + MIR3 SINE MIR 91 203 -5 247 258 76 106 chr9 11193449 11193581 -131077863 + MER91B DNA MER1_type 2 129 -61 244 269 97 43 chr9 11193606 11193699 -131077745 + MER91B DNA MER1_type 91 188 -2 203 86 0 29 chr9 11193794 11193829 -131077615 + (GA)n Simple_repeat Simple_repeat 1 34 0 221 121 0 48 chr9 11195555 11195638 -131075806 + (CAAAAA)n Simple_repeat Simple_repeat 3 81 0 465 293 104 4 chr9 11195780 11195976 -131075468 + MIR SINE MIR 48 257 -5 2136 77 13 7 chr9 11196255 11196555 -131074889 + AluY SINE Alu 1 302 -9 228 35 0 0 chr9 11197141 11197170 -131074274 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2219 71 0 0 chr9 11197172 11197452 -131073992 - AluY SINE Alu -31 280 1 289 204 65 75 chr9 11197999 11198092 -131073352 - L2 LINE L2 -1 3312 3221 21 36 0 0 chr9 11198423 11198451 -131072993 + AT_rich Low_complexity Low_complexity 1 28 0 270 0 0 0 chr9 11198739 11198769 -131072675 + (CA)n Simple_repeat Simple_repeat 1 30 0 677 217 76 60 chr9 11198882 11198993 -131072451 - MER5A DNA MER1_type -2 187 70 1453 183 7 47 chr9 11198993 11199294 -131072150 - AluJo SINE Alu -23 289 1 677 217 76 60 chr9 11199294 11199366 -131072078 - MER5A DNA MER1_type -119 70 1 22 0 0 0 chr9 11200358 11200380 -131071064 + AT_rich Low_complexity Low_complexity 1 22 0 426 234 236 1 chr9 11200487 11200666 -131070778 + MIR SINE MIR 20 232 -30 212 231 96 0 chr9 11200645 11200697 -131070747 + L2 LINE L2 3216 3272 0 * 287 315 102 9 chr9 11200777 11200885 -131070559 + MIR3 SINE MIR 89 206 -2 474 287 102 0 chr9 11200984 11201141 -131070303 - MER5B DNA MER1_type -2 176 4 228 35 0 0 chr9 11201504 11201533 -131069911 + (CA)n Simple_repeat Simple_repeat 2 30 0 27 29 0 0 chr9 11201544 11201578 -131069866 + AT_rich Low_complexity Low_complexity 1 34 0 349 314 73 0 chr9 11201714 11201838 -131069606 + L2 LINE L2 3180 3312 -1 304 273 0 34 chr9 11201853 11201941 -131069503 - L1ME LINE L1 -682 5439 5355 241 325 62 19 chr9 11202306 11202466 -131068978 + MIR3 SINE MIR 33 199 -9 258 132 75 0 chr9 11202564 11202617 -131068827 + Alu SINE Alu 246 302 0 1135 186 81 39 chr9 11202893 11203237 -131068207 - MLT1E3 LTR MaLR -5 619 231 392 266 47 90 chr9 11203885 11203984 -131067460 + MIR SINE MIR 25 127 -135 2381 63 7 0 chr9 11203984 11204286 -131067158 - AluY SINE Alu -7 304 1 392 266 47 90 chr9 11204286 11204419 -131067025 + MIR SINE MIR 127 247 -15 251 218 18 0 chr9 11204421 11204476 -131066968 + (TATG)n Simple_repeat Simple_repeat 2 57 0 1110 198 0 5 chr9 11204621 11204813 -131066631 + AluJb SINE Alu 85 275 -37 39 22 0 0 chr9 11204820 11204866 -131066578 + AT_rich Low_complexity Low_complexity 1 46 0 1875 146 0 10 chr9 11204969 11205277 -131066167 - AluSg SINE Alu -5 305 1 211 111 28 0 chr9 11206533 11206569 -131064875 + G-rich Low_complexity Low_complexity 1 37 0 186 143 0 0 chr9 11207402 11207437 -131064007 + (T)n Simple_repeat Simple_repeat 1 35 0 321 310 115 48 chr9 11209424 11209680 -131061764 + MLT1L LTR MaLR 175 457 -158 1618 204 25 67 chr9 11209680 11210204 -131061240 + MLT1D LTR MaLR 1 502 -3 321 310 115 48 chr9 11210204 11210260 -131061184 + MLT1L LTR MaLR 457 508 -107 669 272 217 19 chr9 11210550 11210863 -131060581 + L2 LINE L2 2428 2802 -512 250 260 71 97 chr9 11210869 11211023 -131060421 + MLT1I LTR MaLR 242 391 -18 284 272 54 33 chr9 11212983 11213075 -131058369 - MIR3 SINE MIR -2 206 113 1117 223 42 28 chr9 11213991 11214278 -131057166 + MLT1E2 LTR MaLR 1 291 -335 1812 182 91 41 chr9 11214619 11215058 -131056386 + LOR1b LTR ERV1 1 461 0 215 31 31 0 chr9 11215482 11215514 -131055930 + (TA)n Simple_repeat Simple_repeat 2 34 0 651 47 12 0 chr9 11215514 11215600 -131055844 - L1PA5 LINE L1 -9 6145 6059 22 0 0 0 chr9 11215617 11215639 -131055805 + AT_rich Low_complexity Low_complexity 1 22 0 23 68 0 0 chr9 11215656 11215700 -131055744 + AT_rich Low_complexity Low_complexity 1 44 0 226 188 21 0 chr9 11217051 11217099 -131054345 + (TA)n Simple_repeat Simple_repeat 1 49 0 22 0 0 0 chr9 11217129 11217151 -131054293 + AT_rich Low_complexity Low_complexity 1 22 0 317 287 40 33 chr9 11217325 11217475 -131053969 + MIR SINE MIR 110 260 -2 21 82 0 0 chr9 11217510 11217559 -131053885 + AT_rich Low_complexity Low_complexity 1 49 0 213 429 15 0 chr9 11217749 11217882 -131053562 + MIR3 SINE MIR 33 167 -41 261 122 0 41 chr9 11218597 11218646 -131052798 + L1PA7 LINE L1 5 51 -6410 * 31052 108 6 23 chr9 11218628 11224807 -131046637 + L1PA7 LINE L1 292 6461 -8 5451 173 33 18 chr9 11225311 11227189 -131044255 - L1MA4A LINE L1 -5 6298 4392 702 318 40 16 chr9 11227172 11227493 -131043951 - L1MC/D LINE L1 -1985 5823 5495 * 1945 142 0 40 chr9 11227719 11228042 -131043402 - AluSx SINE Alu -1 311 2 228 367 11 57 chr9 11229764 11229915 -131041529 + MIR SINE MIR 33 176 -62 286 255 92 41 chr9 11229943 11230041 -131041403 - L2 LINE L2 -3 3310 3208 189 0 0 0 chr9 11231776 11231797 -131039647 + (CA)n Simple_repeat Simple_repeat 2 22 0 243 377 83 30 chr9 11232458 11232988 -131038456 - L2 LINE L2 -527 2787 2230 340 273 23 0 chr9 11234485 11234573 -131036871 - L1MC4 LINE L1 -1339 6703 6614 23 0 0 0 chr9 11235325 11235348 -131036096 + AT_rich Low_complexity Low_complexity 1 23 0 400 259 47 59 chr9 11235911 11236081 -131035363 - Charlie8 DNA MER1_type -2188 229 62 827 204 11 11 chr9 11236986 11237167 -131034277 - AluJb SINE Alu -9 303 123 216 250 0 0 chr9 11237369 11237413 -131034031 + CT-rich Low_complexity Low_complexity 4 47 0 1758 180 13 0 chr9 11239103 11239403 -131032041 - AluJb SINE Alu -8 304 1 192 386 0 39 chr9 11239659 11239786 -131031658 - L2 LINE L2 -255 3058 2937 1112 217 91 0 chr9 11241519 11241578 -131029866 - AluJo SINE Alu 0 349 297 792 96 0 0 chr9 11241578 11241693 -131029751 + (TCCCC)n Simple_repeat Simple_repeat 2 116 0 1112 217 91 0 chr9 11241693 11241841 -131029603 - AluJo SINE Alu -52 297 109 180 77 0 0 chr9 11241841 11241867 -131029577 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 1112 217 91 0 chr9 11241867 11241949 -131029495 - AluJo SINE Alu -240 109 36 279 184 13 79 chr9 11242904 11242980 -131028464 + 7SK RNA RNA 16 86 -107 434 282 160 0 chr9 11243507 11243663 -131027781 - MER5A DNA MER1_type -1 188 8 24 32 0 0 chr9 11244441 11244472 -131026972 + AT_rich Low_complexity Low_complexity 1 31 0 24 77 0 0 chr9 11244974 11245026 -131026418 + AT_rich Low_complexity Low_complexity 1 52 0 303 154 0 144 chr9 11245463 11245567 -131025877 + L1MC4 LINE L1 6615 6703 -1339 22 0 0 0 chr9 11245976 11245998 -131025446 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr9 11247722 11247743 -131023701 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr9 11247777 11247800 -131023644 + AT_rich Low_complexity Low_complexity 1 23 0 1435 306 50 28 chr9 11248950 11249588 -131021856 + MLT2F LTR ERVL 11 628 0 375 251 89 10 chr9 11249766 11249909 -131021535 + MLT1G LTR MaLR 413 585 -10 195 292 67 22 chr9 11250755 11250844 -131020600 - MIR SINE MIR -58 204 112 629 325 0 0 chr9 11251024 11251181 -131020263 - MIR SINE MIR -100 162 6 424 297 21 68 chr9 11251283 11251475 -131019969 + L2 LINE L2 3131 3313 0 4598 218 17 34 chr9 11252649 11254544 -131016900 + L1MC/D LINE L1 3860 5718 -615 378 198 79 20 chr9 11254755 11254856 -131016588 - MLT1J2 LTR MaLR -239 211 105 386 183 29 0 chr9 11254894 11254998 -131016446 + L1M4 LINE L1 3869 3975 -2171 522 341 78 15 chr9 11256068 11256273 -131015171 - MIR SINE MIR -44 218 1 26 0 0 0 chr9 11256337 11256363 -131015081 + AT_rich Low_complexity Low_complexity 1 26 0 258 371 53 7 chr9 11258926 11259077 -131012367 + MIR SINE MIR 61 218 -44 367 262 28 28 chr9 11259317 11259424 -131012020 + MIR3 SINE MIR 54 160 -48 199 276 69 0 chr9 11260065 11260123 -131011321 + MIR SINE MIR 92 153 -109 196 345 76 25 chr9 11261146 11261265 -131010179 + L2 LINE L2 3147 3271 -1 7617 52 5 48 chr9 11261360 11263221 -131008223 - L1PA6 LINE L1 -4 6150 4337 201 317 17 100 chr9 11263403 11263523 -131007921 + L2 LINE L2 3182 3291 -22 30 59 0 0 chr9 11263539 11263590 -131007854 + AT_rich Low_complexity Low_complexity 1 51 0 5527 66 19 4 chr9 11263652 11264393 -131007051 - L1PA7 LINE L1 0 6154 5403 889 213 48 54 chr9 11265673 11265782 -131005662 - L1MA4 LINE L1 -6 6294 6186 2323 105 3 0 chr9 11265782 11266088 -131005356 - AluSp SINE Alu -6 307 1 889 213 48 54 chr9 11266088 11266154 -131005290 - L1MA4 LINE L1 -114 6186 6121 1933 130 3 3 chr9 11266154 11266447 -131004997 + AluSx SINE Alu 1 293 -19 889 213 48 54 chr9 11266447 11266584 -131004860 - L1MA4 LINE L1 -179 6121 5983 240 246 29 0 chr9 11266839 11266908 -131004536 - MER117 DNA MER1_type -51 146 76 1834 136 5 87 chr9 11267113 11267502 -131003942 + MER4A LTR ERV1 1 357 -307 447 176 119 31 chr9 11267556 11267715 -131003729 + MER4C LTR ERV1 293 465 0 31 44 0 0 chr9 11268061 11268106 -131003338 + AT_rich Low_complexity Low_complexity 1 45 0 280 254 0 0 chr9 11268112 11268175 -131003269 + MLT1D LTR MaLR 3 65 -440 1127 117 6 6 chr9 11268176 11268339 -131003105 - AluSx SINE Alu -149 163 1 21 71 0 0 chr9 11268813 11268855 -131002589 + AT_rich Low_complexity Low_complexity 1 42 0 532 287 67 15 chr9 11268855 11269050 -131002394 - MIR SINE MIR -17 245 41 270 308 114 35 chr9 11269148 11269437 -131002007 - L2 LINE L2 0 3313 3002 312 284 7 61 chr9 11272910 11273058 -130998386 - L1MEd LINE L1 -5968 151 12 2331 91 3 0 chr9 11273849 11274156 -130997288 - AluSp SINE Alu -5 308 1 2137 117 3 3 chr9 11275052 11275359 -130996085 - AluSx SINE Alu -5 307 1 524 298 98 9 chr9 11275756 11275971 -130995473 + MIR SINE MIR 23 256 -6 432 132 0 0 chr9 11276032 11276100 -130995344 - MER41A LTR ERV1 -86 468 401 257 177 152 0 chr9 11276483 11276562 -130994882 + L1MA4A LINE L1 6208 6298 -5 263 289 44 31 chr9 11277648 11277807 -130993637 - HAL1 LINE L1 -5 2502 2342 203 393 8 25 chr9 11278546 11278668 -130992776 + MIR3 SINE MIR 37 156 -52 1317 249 83 18 chr9 11278998 11279199 -130992245 - Charlie1b DNA MER1_type -2238 523 337 2416 58 7 0 chr9 11279199 11279507 -130991937 + AluY SINE Alu 1 310 -1 1317 249 83 18 chr9 11279507 11279796 -130991648 - Charlie1b DNA MER1_type -2424 337 1 383 313 6 3 chr9 11280619 11280787 -130990657 - MIR SINE MIR -11 251 33 2192 89 0 0 chr9 11280978 11281285 -130990159 + AluSg SINE Alu 1 307 0 352 314 0 0 chr9 11281285 11281371 -130990073 + L2 LINE L2 3220 3305 -8 459 320 154 0 chr9 11281513 11281669 -130989775 - MER5A DNA MER1_type -6 183 4 2444 72 0 7 chr9 11282370 11282677 -130988767 - AluY SINE Alu -4 307 3 275 382 14 14 chr9 11282679 11282791 -130988653 - MIR SINE MIR -111 151 37 374 183 0 0 chr9 11282791 11282873 -130988571 + L1PB4 LINE L1 6068 6149 -7 275 382 14 14 chr9 11282873 11282904 -130988540 - MIR SINE MIR -224 38 8 189 341 11 23 chr9 11283215 11283303 -130988141 + L2 LINE L2 2261 2347 -967 226 296 0 0 chr9 11284012 11284066 -130987378 + L2 LINE L2 3219 3272 0 27 0 0 0 chr9 11284156 11284183 -130987261 + AT_rich Low_complexity Low_complexity 1 27 0 341 274 19 0 chr9 11285043 11285149 -130986295 - L1MC5 LINE L1 -67 7894 7787 362 288 54 0 chr9 11285325 11285436 -130986008 + L1ME3A LINE L1 6045 6161 -9 211 269 15 30 chr9 11286201 11286268 -130985176 + MIR SINE MIR 87 152 -110 190 376 28 50 chr9 11287449 11287590 -130983854 + MIR SINE MIR 9 146 -116 632 274 13 27 chr9 11288284 11288498 -130982946 - MIR SINE MIR 0 262 55 356 281 125 44 chr9 11289473 11289768 -130981676 - HAL1 LINE L1 -127 2380 2062 650 289 64 68 chr9 11289860 11290314 -130981130 - HAL1 LINE L1 -607 1900 1449 1726 140 68 0 chr9 11291215 11291510 -130979934 - AluSx SINE Alu 0 313 1 542 335 6 0 chr9 11292144 11292320 -130979124 + MER102b DNA MER1_type 154 330 -11 24 32 0 0 chr9 11294767 11294798 -130976646 + AT_rich Low_complexity Low_complexity 1 31 0 3511 98 17 2 chr9 11295147 11295669 -130975775 - L1MA2 LINE L1 -6 6298 5769 2998 46 0 3 chr9 11295677 11296046 -130975398 - L1PA5 LINE L1 -8 6146 5779 953 35 0 0 chr9 11296046 11296161 -130975283 + L1P2 LINE L1 5461 5575 -580 * 2834 165 8 36 chr9 11296148 11297844 -130973600 - L1MA2 LINE L1 -507 5797 4052 678 216 0 49 chr9 11298330 11298492 -130972952 - FRAM SINE Alu -12 164 11 26 0 0 0 chr9 11299450 11299476 -130971968 + AT_rich Low_complexity Low_complexity 1 26 0 229 250 104 10 chr9 11300230 11300326 -130971118 + MIR SINE MIR 102 206 -56 24 0 0 0 chr9 11301219 11301243 -130970201 + AT_rich Low_complexity Low_complexity 1 24 0 2199 108 20 6 chr9 11302364 11302707 -130968737 + L1MA2 LINE L1 5957 6304 0 195 308 13 51 chr9 11303624 11303702 -130967742 + L2 LINE L2 3099 3173 -99 386 286 130 25 chr9 11303981 11304142 -130967302 + MIR SINE MIR 56 233 -29 230 321 123 45 chr9 11304800 11305038 -130966406 + MLT1K LTR MaLR 142 405 -183 207 0 0 0 chr9 11305038 11305061 -130966383 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 230 321 123 45 chr9 11305061 11305090 -130966354 + MLT1K LTR MaLR 405 430 -158 1487 193 89 65 chr9 11305131 11305624 -130965820 + MLT1D LTR MaLR 1 505 0 864 144 0 0 chr9 11306206 11306338 -130965106 - FLAM_C SINE Alu 0 133 2 226 204 23 0 chr9 11306797 11306841 -130964603 + L2 LINE L2 3266 3310 -3 25 65 0 0 chr9 11306936 11306982 -130964462 + AT_rich Low_complexity Low_complexity 1 46 0 518 333 61 0 chr9 11307063 11307261 -130964183 + MIR SINE MIR 47 256 -6 2073 246 54 27 chr9 11309311 11309904 -130961540 - MER90 LTR ERV1 0 614 6 463 343 111 11 chr9 11309936 11310207 -130961237 + L2 LINE L2 2501 2798 -516 687 318 82 21 chr9 11310254 11310584 -130960860 + L2 LINE L2 2931 3280 -33 270 56 0 0 chr9 11311666 11311702 -130959742 + (TG)n Simple_repeat Simple_repeat 1 36 0 688 186 0 0 chr9 11311887 11312000 -130959444 + FLAM_C SINE Alu 1 113 -30 232 111 37 0 chr9 11312065 11312119 -130959325 + (TA)n Simple_repeat Simple_repeat 1 56 0 376 297 45 0 chr9 11312309 11312420 -130959024 - L2 LINE L2 -33 3280 3165 591 160 17 0 chr9 11312423 11312598 -130958846 + (TA)n Simple_repeat Simple_repeat 2 179 0 21 36 0 0 chr9 11312607 11312635 -130958809 + AT_rich Low_complexity Low_complexity 1 28 0 237 65 0 0 chr9 11313323 11313354 -130958090 + (T)n Simple_repeat Simple_repeat 1 31 0 2434 50 0 13 chr9 11313487 11313804 -130957640 - L1PA5 LINE L1 -8 6146 5834 351 174 0 0 chr9 11314314 11314400 -130957044 + GA-rich Low_complexity Low_complexity 2 87 0 390 330 77 6 chr9 11315571 11315753 -130955691 + MIR SINE MIR 47 241 -21 1405 131 31 207 chr9 11315911 11316332 -130955112 + MER7A DNA MER2_type 2 346 0 1299 205 4 15 chr9 11316476 11316744 -130954700 + AluJo SINE Alu 3 267 -45 245 192 0 0 chr9 11316744 11316796 -130954648 + (TA)n Simple_repeat Simple_repeat 1 52 0 442 250 0 43 chr9 11316797 11316913 -130954531 + MER77 LTR ERV1 491 601 -4 189 360 50 0 chr9 11316915 11317015 -130954429 - L2 LINE L2 -20 3293 3189 561 306 56 0 chr9 11317167 11317327 -130954117 - MIR SINE MIR -71 191 23 254 352 112 60 chr9 11317827 11318396 -130953048 - L2 LINE L2 -5 3267 2688 595 312 86 17 chr9 11318460 11318694 -130952750 + MIR SINE MIR 11 260 -2 21 36 0 0 chr9 11318746 11318774 -130952670 + AT_rich Low_complexity Low_complexity 1 28 0 28 0 0 0 chr9 11319141 11319169 -130952275 + AT_rich Low_complexity Low_complexity 1 28 0 554 254 28 14 chr9 11319784 11319926 -130951518 + MER106A DNA MER1_type 1 144 -92 288 0 0 0 chr9 11321677 11321709 -130949735 + (TA)n Simple_repeat Simple_repeat 2 33 0 34 42 0 0 chr9 11321830 11321878 -130949566 + AT_rich Low_complexity Low_complexity 1 48 0 2802 178 55 3 chr9 11321886 11322612 -130948832 + L1MC1 LINE L1 5442 6322 -11 25 31 0 0 chr9 11322616 11322648 -130948796 + AT_rich Low_complexity Low_complexity 1 32 0 24 0 0 0 chr9 11324276 11324300 -130947144 + AT_rich Low_complexity Low_complexity 1 24 0 26 0 0 0 chr9 11325643 11325669 -130945775 + AT_rich Low_complexity Low_complexity 1 26 0 26 30 0 0 chr9 11326299 11326332 -130945112 + AT_rich Low_complexity Low_complexity 1 33 0 594 281 97 0 chr9 11327451 11327647 -130943797 + MER58C DNA MER1_type 1 215 0 1710 217 43 27 chr9 11328073 11328543 -130942901 + MLT1F LTR MaLR 5 542 0 264 119 51 0 chr9 11328703 11328762 -130942682 + (TA)n Simple_repeat Simple_repeat 1 62 0 517 294 91 5 chr9 11329291 11329512 -130941932 + MIR SINE MIR 13 252 -10 9460 200 31 10 chr9 11330620 11331055 -130940389 + L1PA14 LINE L1 3240 3664 -2497 465 50 0 0 chr9 11331055 11331115 -130940329 + (CA)n Simple_repeat Simple_repeat 2 61 0 9460 200 31 10 chr9 11331115 11333555 -130937889 + L1PA14 LINE L1 3664 6160 -1 256 319 11 11 chr9 11333595 11333689 -130937755 + MIR SINE MIR 112 205 -57 2004 123 0 35 chr9 11334515 11334831 -130936613 + AluSx SINE Alu 1 305 -7 1169 223 47 76 chr9 11335052 11335082 -130936362 - MER110A LTR ERV1 0 468 482 1142 215 55 70 chr9 11335082 11335557 -130935887 - MER110A LTR ERV1 0 468 1 579 216 60 117 chr9 11336853 11336896 -130934548 + L2 LINE L2 3038 3082 -231 468 0 0 0 chr9 11336896 11336948 -130934496 + (CA)n Simple_repeat Simple_repeat 2 53 0 579 216 60 117 chr9 11336948 11337187 -130934257 + L2 LINE L2 3082 3304 -9 344 347 52 21 chr9 11337594 11337787 -130933657 + L2 LINE L2 1876 2074 -1240 796 273 72 29 chr9 11337948 11338325 -130933119 - Charlie7 DNA MER1_type -1889 723 331 235 180 20 0 chr9 11338507 11338557 -130932887 + (TAA)n Simple_repeat Simple_repeat 1 51 0 195 302 0 32 chr9 11338601 11338664 -130932780 - MIR SINE MIR -6 256 196 291 362 133 20 chr9 11338679 11338875 -130932569 - L3 LINE CR1 -1325 252 35 1358 82 117 0 chr9 11339419 11339625 -130931819 + MER30 DNA MER1_type 1 230 0 220 244 8 73 chr9 11340187 11340310 -130931134 + T-rich Low_complexity Low_complexity 6 120 0 210 360 90 9 chr9 11340421 11340485 -130930959 - L2 LINE L2 0 3272 3215 7047 53 0 3 chr9 11340485 11341913 -130929531 + L1PA6 LINE L1 4716 6148 -6 210 360 90 9 chr9 11341913 11341959 -130929485 - L2 LINE L2 -57 3215 3153 270 0 0 0 chr9 11342763 11342793 -130928651 + (TC)n Simple_repeat Simple_repeat 1 30 0 23 0 0 0 chr9 11344263 11344286 -130927158 + AT_rich Low_complexity Low_complexity 1 23 0 261 233 14 14 chr9 11344402 11344475 -130926969 + (TA)n Simple_repeat Simple_repeat 1 73 0 21 82 0 0 chr9 11346416 11346465 -130924979 + AT_rich Low_complexity Low_complexity 1 49 0 1745 138 42 18 chr9 11346486 11346769 -130924675 + AluSg SINE Alu 4 293 -17 305 274 32 42 chr9 11347343 11347438 -130924006 + MIR SINE MIR 86 179 -83 31 26 0 0 chr9 11347511 11347549 -130923895 + AT_rich Low_complexity Low_complexity 1 38 0 2530 168 33 6 chr9 11347618 11348105 -130923339 + L1MA4A LINE L1 5479 5978 -325 335 262 0 57 chr9 11348126 11348248 -130923196 + L1PB4 LINE L1 5941 6055 -101 269 320 41 10 chr9 11348266 11348363 -130923081 - MIR SINE MIR -71 191 92 21 82 0 0 chr9 11348732 11348781 -130922663 + AT_rich Low_complexity Low_complexity 1 49 0 7703 19 1 1 chr9 11349674 11350899 -130920545 + L1PA2 LINE L1 4931 6155 0 21 0 0 0 chr9 11351725 11351746 -130919698 + AT_rich Low_complexity Low_complexity 1 21 0 314 381 14 14 chr9 11353850 11353989 -130917455 - MIR3 SINE MIR -66 142 4 228 185 37 0 chr9 11354679 11354733 -130916711 + L1MC4 LINE L1 6648 6703 -1339 209 171 0 0 chr9 11355040 11355075 -130916369 + (CA)n Simple_repeat Simple_repeat 2 36 0 195 42 0 0 chr9 11356455 11356479 -130914965 + (TA)n Simple_repeat Simple_repeat 1 24 0 217 359 48 10 chr9 11356490 11356593 -130914851 - MIR SINE MIR -114 148 42 514 178 10 40 chr9 11356776 11356877 -130914567 + Tigger5 DNA MER2_type 2225 2322 -1 22 56 0 0 chr9 11357169 11357205 -130914239 + AT_rich Low_complexity Low_complexity 1 36 0 249 103 0 0 chr9 11358435 11358474 -130912970 + L1PA3 LINE L1 6115 6153 -2 320 365 67 47 chr9 11359453 11359752 -130911692 + L2 LINE L2 2530 2834 -480 227 357 64 32 chr9 11359833 11359990 -130911454 + L2 LINE L2 2897 3058 -214 180 0 0 0 chr9 11362295 11362315 -130909129 + (CA)n Simple_repeat Simple_repeat 1 20 0 1758 180 13 0 chr9 11364994 11365294 -130906150 - AluJb SINE Alu -8 304 1 192 386 0 39 chr9 11365551 11365678 -130905766 - L2 LINE L2 -255 3058 2937 23 0 0 0 chr9 11367014 11367037 -130904407 + AT_rich Low_complexity Low_complexity 1 23 0 261 233 14 14 chr9 11367153 11367226 -130904218 + (TA)n Simple_repeat Simple_repeat 2 74 0 21 82 0 0 chr9 11369169 11369218 -130902226 + AT_rich Low_complexity Low_complexity 1 49 0 1793 117 50 25 chr9 11369239 11369522 -130901922 + AluSg SINE Alu 4 293 -17 312 274 32 42 chr9 11370096 11370191 -130901253 + MIR SINE MIR 86 179 -83 31 26 0 0 chr9 11370264 11370302 -130901142 + AT_rich Low_complexity Low_complexity 1 38 0 2499 170 33 6 chr9 11370371 11370858 -130900586 + L1MA4A LINE L1 5479 5978 -325 335 262 0 57 chr9 11370879 11371001 -130900443 + L1PB4 LINE L1 5941 6055 -101 269 320 41 10 chr9 11371019 11371116 -130900328 - MIR SINE MIR -71 191 92 21 82 0 0 chr9 11371485 11371534 -130899910 + AT_rich Low_complexity Low_complexity 1 49 0 7699 19 1 1 chr9 11372427 11373652 -130897792 + L1PA2 LINE L1 4931 6155 0 21 0 0 0 chr9 11374477 11374498 -130896946 + AT_rich Low_complexity Low_complexity 1 21 0 314 381 14 14 chr9 11376601 11376740 -130894704 - MIR3 SINE MIR -66 142 4 228 185 37 0 chr9 11377430 11377484 -130893960 + L1MC4 LINE L1 6648 6703 -1339 209 171 0 0 chr9 11377791 11377826 -130893618 + (CA)n Simple_repeat Simple_repeat 2 36 0 258 32 0 0 chr9 11381024 11381055 -130890389 + (T)n Simple_repeat Simple_repeat 1 31 0 185 105 0 26 chr9 11382603 11382641 -130888803 + (TG)n Simple_repeat Simple_repeat 2 38 0 204 288 111 9 chr9 11382656 11382764 -130888680 - MIR SINE MIR -63 145 34 310 284 41 58 chr9 11383187 11383393 -130888051 - MIR SINE MIR -39 223 20 254 29 0 0 chr9 11383621 11383655 -130887789 + L1PA6 LINE L1 6117 6150 -4 5814 77 25 7 chr9 11383657 11384875 -130886569 + SVA Other Other 31 1385 -1 25 51 0 0 chr9 11384880 11384919 -130886525 + AT_rich Low_complexity Low_complexity 1 39 0 403 269 99 57 chr9 11386081 11386293 -130885151 + MIR SINE MIR 41 261 -1 4811 204 35 22 chr9 11386790 11388577 -130882867 - L1M2 LINE L1 -511 5801 3986 249 108 0 0 chr9 11389425 11389462 -130881982 + (CA)n Simple_repeat Simple_repeat 2 38 0 793 267 141 20 chr9 11391780 11392425 -130879019 - L1MB7 LINE L1 -7 6155 5419 3633 220 64 3 chr9 11392428 11393493 -130877951 + L1MA9 LINE L1 3205 4334 -1812 6506 83 28 23 chr9 11393517 11394443 -130877001 - L1PA7 LINE L1 -4 6150 5226 30 59 0 0 chr9 11394455 11394506 -130876938 + AT_rich Low_complexity Low_complexity 1 51 0 513 147 20 0 chr9 11394545 11394647 -130876797 - L1MB4 LINE L1 0 6180 6077 4090 207 48 17 chr9 11394691 11396230 -130875214 + L1MA9 LINE L1 4326 5927 -385 2280 106 3 0 chr9 11396233 11396536 -130874908 - AluSx SINE Alu -8 304 1 272 326 7 50 chr9 11396779 11396835 -130874609 + L2 LINE L2 1773 1830 -1484 1849 166 0 3 chr9 11396835 11397137 -130874307 - AluSx SINE Alu -11 301 1 272 326 7 50 chr9 11397137 11397221 -130874223 + L2 LINE L2 1830 1907 -1407 1182 200 9 9 chr9 11397312 11397532 -130873912 + AluJo SINE Alu 1 220 -92 248 189 0 0 chr9 11397532 11397585 -130873859 + FAM SINE Alu 127 179 0 609 219 175 32 chr9 11398308 11398646 -130872798 + L1ME2 LINE L1 5765 6150 -14 909 144 17 58 chr9 11399293 11399466 -130871978 - FRAM SINE Alu -13 163 1 767 158 25 0 chr9 11400553 11400673 -130870771 - FLAM_C SINE Alu -20 123 1 2214 120 0 7 chr9 11400724 11401024 -130870420 + AluSx SINE Alu 1 298 -14 1933 123 42 7 chr9 11401087 11401371 -130870073 + AluSx SINE Alu 9 302 -10 647 256 106 45 chr9 11401424 11401670 -130869774 - MIR SINE MIR -1 261 1 372 354 101 13 chr9 11401674 11401911 -130869533 + L2 LINE L2 2807 3064 -208 192 346 37 12 chr9 11401995 11402076 -130869368 + L2 LINE L2 3190 3272 0 1376 174 27 15 chr9 11402573 11402915 -130868529 + Tigger3(Golem) DNA MER2_type 48 3029 0 425 255 47 65 chr9 11403191 11403364 -130868080 - MIR SINE MIR -70 138 8 2504 78 3 0 chr9 11403394 11403703 -130867741 + AluSp SINE Alu 2 311 -2 5975 77 5 2 chr9 11404900 11405701 -130865743 + L1PA7 LINE L1 5341 6143 -11 326 299 36 28 chr9 11405922 11406173 -130865271 + L1M4 LINE L1 3875 4127 -2019 457 317 67 18 chr9 11406667 11406831 -130864613 + MIR3 SINE MIR 30 201 -7 1753 189 42 3 chr9 11406881 11407215 -130864229 - MER7A DNA MER2_type 0 346 2 1113 170 13 45 chr9 11407878 11408041 -130863403 - MER20 DNA MER1_type -2 217 61 2067 122 24 10 chr9 11408041 11408335 -130863109 + AluSx SINE Alu 1 298 -14 1113 170 13 45 chr9 11408335 11408395 -130863049 - MER20 DNA MER1_type -158 61 1 305 339 36 9 chr9 11410456 11410568 -130860876 + L1ME LINE L1 3 117 -5953 360 304 132 67 chr9 11411544 11411886 -130859558 + L1M2 LINE L1 611 974 -5875 347 265 145 8 chr9 11412727 11412844 -130858600 + MIR3 SINE MIR 30 162 -46 198 329 13 25 chr9 11413941 11414020 -130857424 + L2 LINE L2 3004 3081 -232 958 128 20 13 chr9 11414134 11414283 -130857161 - AluJo SINE Alu -159 153 4 1547 104 5 0 chr9 11414306 11414518 -130856926 + AluSg1 SINE Alu 1 213 -96 2498 51 0 0 chr9 11414518 11414810 -130856634 + AluSc SINE Alu 1 293 -16 577 75 25 0 chr9 11414810 11414890 -130856554 + AluSg1 SINE Alu 205 286 -26 389 250 36 0 chr9 11414897 11414981 -130856463 + L2 LINE L2 3203 3289 -24 181 360 30 30 chr9 11419251 11419351 -130852093 + MER5A DNA MER1_type 69 168 -21 21 0 0 0 chr9 11419647 11419668 -130851776 + AT_rich Low_complexity Low_complexity 1 21 0 214 247 14 27 chr9 11420507 11420580 -130850864 + T-rich Low_complexity Low_complexity 6 77 0 675 233 7 20 chr9 11420995 11421145 -130850299 + MER5A DNA MER1_type 5 152 -37 359 217 12 12 chr9 11421255 11421338 -130850106 - MLT1K LTR MaLR -338 250 168 495 0 0 0 chr9 11421398 11421453 -130849991 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 2172 98 0 16 chr9 11422340 11422645 -130848799 - AluSq SINE Alu -13 300 1 261 0 0 0 chr9 11423070 11423099 -130848345 + (TA)n Simple_repeat Simple_repeat 1 29 0 2189 98 0 0 chr9 11423099 11423376 -130848068 - AluSp SINE Alu -7 306 30 476 152 0 0 chr9 11424128 11424194 -130847250 - AluJo SINE Alu -120 192 127 1693 158 50 4 chr9 11424204 11424364 -130847080 - AluJb SINE Alu -20 292 112 186 43 0 0 chr9 11424364 11424387 -130847057 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 1693 158 50 4 chr9 11424387 11424505 -130846939 - AluJb SINE Alu -200 112 1 1993 90 14 31 chr9 11424777 11425067 -130846377 + AluY SINE Alu 1 285 -26 775 215 108 0 chr9 11425166 11425380 -130846064 - L1ME2 LINE L1 -10 6154 5918 1097 209 5 5 chr9 11425430 11425631 -130845813 - AluJo SINE Alu -92 220 20 239 213 150 0 chr9 11425646 11425726 -130845718 - L1ME2 LINE L1 -279 5885 5794 215 341 111 14 chr9 11425726 11425934 -130845510 + L2 LINE L2 1742 1969 -1345 233 315 143 19 chr9 11425934 11426150 -130845294 + L2 LINE L2 2328 2570 -744 194 348 11 11 chr9 11426302 11426391 -130845053 - MIR SINE MIR -63 145 57 2179 137 0 0 chr9 11427453 11427746 -130843698 + AluSx SINE Alu 3 295 -17 1416 188 72 51 chr9 11428006 11428299 -130843145 - AluJo SINE Alu -13 299 1 309 312 115 13 chr9 11428500 11428657 -130842787 + MIR SINE MIR 80 252 -10 445 287 44 48 chr9 11428658 11428923 -130842521 - L1ME2 LINE L1 -456 5665 5443 662 179 0 0 chr9 11428946 11429058 -130842386 - AluJb SINE Alu -81 231 120 340 287 41 26 chr9 11429172 11429367 -130842077 + L1MA9 LINE L1 5987 6184 -128 26 0 0 0 chr9 11429382 11429408 -130842036 + AT_rich Low_complexity Low_complexity 1 26 0 304 374 39 0 chr9 11429524 11429679 -130841765 - MIR SINE MIR -82 180 20 30 93 0 0 chr9 11430003 11430089 -130841355 + AT_rich Low_complexity Low_complexity 1 86 0 193 128 43 0 chr9 11430118 11430165 -130841279 + (TA)n Simple_repeat Simple_repeat 2 50 0 353 341 17 34 chr9 11430766 11430942 -130840502 + HAL1b LINE L1 330 502 -846 22 35 0 0 chr9 11431082 11431111 -130840333 + AT_rich Low_complexity Low_complexity 1 29 0 1325 171 98 15 chr9 11431284 11431558 -130839886 + AluSx SINE Alu 1 297 -15 373 181 21 0 chr9 11431558 11431652 -130839792 + GA-rich Low_complexity Low_complexity 1 96 0 31 26 0 0 chr9 11431848 11431886 -130839558 + AT_rich Low_complexity Low_complexity 1 38 0 415 228 87 0 chr9 11432928 11433020 -130838424 - MIR SINE MIR -78 184 85 195 169 43 26 chr9 11433455 11433505 -130837939 - MIR SINE MIR -57 151 105 181 171 0 49 chr9 11433658 11433699 -130837745 + MIR SINE MIR 39 77 -131 196 128 77 26 chr9 11434512 11434551 -130836893 + L2 LINE L2 3230 3270 -2 331 284 127 22 chr9 11434597 11434731 -130836713 - MIR SINE MIR -70 192 45 258 32 0 0 chr9 11434948 11434979 -130836465 + (TG)n Simple_repeat Simple_repeat 1 31 0 1367 94 5 11 chr9 11435080 11435271 -130836173 + AluY SINE Alu 111 300 -11 2474 60 0 0 chr9 11435406 11435704 -130835740 + AluY SINE Alu 4 301 -10 412 196 143 58 chr9 11435715 11435779 -130835665 + L2 LINE L2 3109 3166 -147 695 206 0 22 chr9 11435779 11435915 -130835529 - FLAM_A SINE Alu 0 133 1 412 196 143 58 chr9 11435915 11436039 -130835405 + L2 LINE L2 3166 3313 0 977 161 39 39 chr9 11436732 11436912 -130834532 + MER20 DNA MER1_type 40 219 0 1660 178 7 26 chr9 11437429 11437733 -130833711 - AluJo SINE Alu -14 298 1 880 188 48 0 chr9 11437761 11437926 -130833518 + AluJb SINE Alu 127 299 -13 1170 237 16 0 chr9 11438065 11438318 -130833126 - MER58 DNA MER1_type -2163 257 1 27 29 0 0 chr9 11438822 11438856 -130832588 + AT_rich Low_complexity Low_complexity 1 34 0 2334 88 0 3 chr9 11438947 11439243 -130832201 + AluSx SINE Alu 1 295 -17 1771 174 0 20 chr9 11439369 11439668 -130831776 + AluJo SINE Alu 1 293 -19 202 271 172 16 chr9 11440183 11440305 -130831139 - MIR3 SINE MIR -62 146 6 248 333 26 26 chr9 11440622 11440739 -130830705 + L2 LINE L2 3134 3250 -22 383 338 69 61 chr9 11441080 11441441 -130830003 - L2 LINE L2 -12 3260 2897 431 244 61 61 chr9 11441617 11441748 -130829696 - MER20 DNA MER1_type -88 131 1 27 0 0 26 chr9 11441819 11441837 -130829607 + AT_rich Low_complexity Low_complexity 1 18 -19 3158 69 16 5 chr9 11441837 11442284 -130829160 + L1PA7 LINE L1 5700 6151 -3 27 0 0 26 chr9 11442284 11442303 -130829141 + AT_rich Low_complexity Low_complexity 18 37 0 278 360 205 5 chr9 11442423 11442623 -130828821 + MIR SINE MIR 5 244 -18 25 31 0 0 chr9 11443080 11443112 -130828332 + AT_rich Low_complexity Low_complexity 1 32 0 27 49 0 0 chr9 11443858 11443899 -130827545 + AT_rich Low_complexity Low_complexity 1 41 0 358 306 49 35 chr9 11445774 11445918 -130825526 - L2 LINE L2 0 3313 3168 189 197 155 28 chr9 11446492 11446563 -130824881 - L2 LINE L2 -4 3268 3189 21 36 0 0 chr9 11446851 11446879 -130824565 + AT_rich Low_complexity Low_complexity 1 28 0 6799 74 6 0 chr9 11447365 11448635 -130822809 + L1PA8 LINE L1 4893 6171 -1 212 410 38 0 chr9 11448798 11448903 -130822541 + MIR SINE MIR 52 160 -102 231 88 0 0 chr9 11449199 11449233 -130822211 + (TA)n Simple_repeat Simple_repeat 2 35 0 1093 176 19 37 chr9 11450060 11450106 -130821338 + AluJb SINE Alu 85 130 -182 312 27 0 0 chr9 11450106 11450143 -130821301 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 1093 176 19 37 chr9 11450143 11450312 -130821132 + AluJb SINE Alu 130 296 -16 26 64 0 0 chr9 11451096 11451143 -130820301 + AT_rich Low_complexity Low_complexity 1 47 0 378 250 82 41 chr9 11451595 11451791 -130819653 + L1MC5 LINE L1 7726 7929 -32 205 167 0 0 chr9 11452075 11452111 -130819333 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 22 0 0 0 chr9 11452202 11452224 -130819220 + AT_rich Low_complexity Low_complexity 1 22 0 250 263 21 21 chr9 11452468 11452563 -130818881 + A-rich Low_complexity Low_complexity 5 99 0 2269 64 0 0 chr9 11452567 11452893 -130818551 + AluY SINE Alu 1 326 0 4976 185 31 24 chr9 11452905 11454548 -130816896 + L1PB3 LINE L1 4143 5803 -351 180 77 0 0 chr9 11454548 11454574 -130816870 + (CA)n Simple_repeat Simple_repeat 2 27 0 4976 185 31 24 chr9 11454574 11454920 -130816524 + L1PB3 LINE L1 5803 6145 -9 * 5283 183 39 5 chr9 11454919 11456302 -130815142 - L1M1 LINE L1 -705 7019 5606 372 258 0 0 chr9 11456322 11456411 -130815033 - L1M1 LINE L1 -2759 4806 4718 * 3837 118 17 0 chr9 11456401 11457030 -130814414 - L1P LINE L1 -732 5422 4781 3010 198 22 14 chr9 11457021 11458068 -130813376 - L1M1 LINE L1 -3233 4332 3274 * 1558 117 0 25 chr9 11458071 11458311 -130813133 + L1PA8A LINE L1 5884 6117 -14 9334 194 19 41 chr9 11458332 11458444 -130813000 - L1M1 LINE L1 -5687 1878 1765 369 0 0 0 chr9 11458444 11458485 -130812959 + (TC)n Simple_repeat Simple_repeat 2 42 0 9334 194 19 41 chr9 11458485 11458563 -130812881 - L1M1 LINE L1 -5800 1765 1687 2464 70 0 0 chr9 11458563 11458865 -130812579 + AluY SINE Alu 1 302 -9 9334 194 19 41 chr9 11458865 11460571 -130810873 - L1M1 LINE L1 -5878 1687 22 415 301 17 46 chr9 11461471 11461644 -130809800 + L2 LINE L2 3146 3313 0 6794 73 8 2 chr9 11462193 11463339 -130808105 - L1PA7 LINE L1 -2 6152 5004 4862 110 7 1 chr9 11463339 11464082 -130807362 + L1PA7 LINE L1 4250 4996 -1150 219 289 91 25 chr9 11464894 11465015 -130806429 - MIR SINE MIR -46 216 88 21 0 0 0 chr9 11465192 11465213 -130806231 + AT_rich Low_complexity Low_complexity 1 21 0 211 293 0 0 chr9 11466016 11466074 -130805370 - MIR SINE MIR -21 241 184 27 29 0 0 chr9 11466492 11466526 -130804918 + AT_rich Low_complexity Low_complexity 1 34 0 25 31 0 0 chr9 11466866 11466898 -130804546 + AT_rich Low_complexity Low_complexity 1 32 0 2450 125 0 0 chr9 11466979 11467426 -130804018 - L1P4 LINE L1 -558 5608 5159 2031 156 17 3 chr9 11467426 11467784 -130803660 + L1PA16 LINE L1 5793 6156 -10 352 311 42 17 chr9 11467839 11467958 -130803486 + L2 LINE L2 3149 3270 -2 2736 0 0 7 chr9 11469229 11469532 -130801912 + AluYa5 SINE Alu 1 301 -10 587 76 0 0 chr9 11469713 11469792 -130801652 - L1PA8 LINE L1 -224 5948 5870 25 51 0 0 chr9 11470356 11470395 -130801049 + AT_rich Low_complexity Low_complexity 1 39 0 6000 145 35 5 chr9 11470889 11471980 -130799464 - L1MA2 LINE L1 0 6304 5184 577 257 22 34 chr9 11472315 11472494 -130798950 - MER5B DNA MER1_type -1 177 1 22 0 0 0 chr9 11472761 11472783 -130798661 + AT_rich Low_complexity Low_complexity 1 22 0 202 291 8 94 chr9 11473303 11473430 -130798014 - L3 LINE CR1 -1 1576 1461 183 42 0 0 chr9 11473671 11473695 -130797749 + (A)n Simple_repeat Simple_repeat 1 24 0 640 297 28 73 chr9 11474045 11474312 -130797132 - L2 LINE L2 -2 3311 3060 2548 52 0 0 chr9 11474312 11474619 -130796825 + AluY SINE Alu 1 307 -4 640 297 28 73 chr9 11474619 11474678 -130796766 - L2 LINE L2 -253 3060 3000 390 295 3 48 chr9 11475109 11475274 -130796170 - MIR SINE MIR -65 143 19 1392 202 50 106 chr9 11476688 11476917 -130794527 - L1MD3 LINE L1 -1 7994 7754 1218 87 49 0 chr9 11476917 11477102 -130794342 + L1MA3 LINE L1 6112 6305 0 1392 202 50 106 chr9 11477102 11477392 -130794052 - L1MD3 LINE L1 -241 7754 7504 1210 35 0 0 chr9 11477392 11477537 -130793907 - L1P LINE L1 -1969 4177 4033 8876 54 7 0 chr9 11477537 11479433 -130792011 + L1PA5 LINE L1 4253 6153 -1 378 278 28 9 chr9 11479453 11479561 -130791883 - L1MD3 LINE L1 -482 7513 7404 2618 244 77 112 chr9 11479562 11479944 -130791500 - L1MD3 LINE L1 -718 7277 6883 312 27 0 0 chr9 11479944 11479981 -130791463 + (TCTA)n Simple_repeat Simple_repeat 1 37 0 2618 244 77 112 chr9 11479981 11481053 -130790391 - L1MD3 LINE L1 -1112 6883 5775 2295 178 29 2 chr9 11481053 11481502 -130789942 - L1MA4 LINE L1 -6 6294 5834 2618 244 77 112 chr9 11481502 11481898 -130789546 - L1MD3 LINE L1 -2220 5775 5491 1796 143 0 41 chr9 11481898 11482191 -130789253 - AluSg SINE Alu -29 281 1 2618 244 77 112 chr9 11482191 11482246 -130789198 - L1MD3 LINE L1 -2504 5491 5436 243 0 0 0 chr9 11482330 11482357 -130789087 + (TG)n Simple_repeat Simple_repeat 2 28 0 249 300 0 0 chr9 11482373 11482463 -130788981 + L1MC4 LINE L1 6614 6703 -1339 243 152 0 0 chr9 11482483 11482529 -130788915 - LTR66 LTR ERVL -171 439 394 241 152 0 0 chr9 11482489 11482535 -130788909 + LTR66 LTR ERVL 394 439 -171 * 183 42 0 0 chr9 11483601 11483625 -130787819 + (TTTTTG)n Simple_repeat Simple_repeat 6 29 0 249 33 0 0 chr9 11483650 11483680 -130787764 + (TG)n Simple_repeat Simple_repeat 1 30 0 782 260 48 18 chr9 11484012 11484348 -130787096 + MLT1I LTR MaLR 6 405 -4 23 54 0 0 chr9 11484732 11484769 -130786675 + AT_rich Low_complexity Low_complexity 1 37 0 26 50 0 0 chr9 11484924 11484964 -130786480 + AT_rich Low_complexity Low_complexity 1 40 0 28 48 0 0 chr9 11486019 11486061 -130785383 + AT_rich Low_complexity Low_complexity 1 42 0 4902 200 22 7 chr9 11486061 11487987 -130783457 - L1MB1 LINE L1 -6 6162 4209 236 234 13 13 chr9 11488073 11488150 -130783294 + (TA)n Simple_repeat Simple_repeat 1 77 0 2406 68 0 0 chr9 11489013 11489309 -130782135 - AluY SINE Alu -15 296 1 23 0 0 0 chr9 11489317 11489340 -130782104 + AT_rich Low_complexity Low_complexity 1 23 0 225 0 0 0 chr9 11489735 11489760 -130781684 + (A)n Simple_repeat Simple_repeat 1 25 0 13268 151 25 29 chr9 11490046 11492452 -130778992 + Tigger1 DNA MER2_type 24 2418 0 24 67 0 0 chr9 11493305 11493350 -130778094 + AT_rich Low_complexity Low_complexity 1 45 0 219 88 0 0 chr9 11494067 11494101 -130777343 + (TA)n Simple_repeat Simple_repeat 1 34 0 363 121 0 0 chr9 11494104 11494162 -130777282 + (GA)n Simple_repeat Simple_repeat 2 59 0 648 276 26 49 chr9 11494369 11494633 -130776811 - MLT1B LTR MaLR -4 386 129 21 36 0 0 chr9 11496105 11496133 -130775311 + AT_rich Low_complexity Low_complexity 1 28 0 270 0 0 0 chr9 11496205 11496235 -130775209 + (TG)n Simple_repeat Simple_repeat 2 31 0 231 250 80 11 chr9 11496300 11496388 -130775056 + Charlie2 DNA MER1_type 173 266 -2596 783 250 14 10 chr9 11496393 11496601 -130774843 - MER3 DNA MER1_type 0 209 1 404 274 94 18 chr9 11496660 11496989 -130774455 + Charlie2 DNA MER1_type 2478 2831 -31 563 273 105 43 chr9 11498687 11498896 -130772548 + MIR SINE MIR 13 234 -28 4368 66 2 0 chr9 11499645 11500208 -130771236 + L1PA7 LINE L1 5591 6154 0 2538 84 11 0 chr9 11500208 11500551 -130770893 + L1PA8 LINE L1 5815 6165 -7 1228 264 53 57 chr9 11500944 11501432 -130770012 + L1MC4 LINE L1 6745 7232 -810 1981 146 0 0 chr9 11501432 11501727 -130769717 - AluSx SINE Alu -17 295 1 1228 264 53 57 chr9 11501727 11501780 -130769664 + L1MC4 LINE L1 7232 7284 -758 375 273 1 10 chr9 11502353 11502465 -130768979 + L1MC4 LINE L1 7224 7396 -473 233 29 29 0 chr9 11502919 11502953 -130768491 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 294 97 43 21 chr9 11503039 11503132 -130768312 + (TA)n Simple_repeat Simple_repeat 1 95 0 1517 191 62 76 chr9 11503380 11503803 -130767641 + MSTB1 LTR MaLR 16 432 0 21 0 0 0 chr9 11504068 11504089 -130767355 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 11504228 11504249 -130767195 + AT_rich Low_complexity Low_complexity 1 21 0 33 0 0 0 chr9 11504450 11504483 -130766961 + AT_rich Low_complexity Low_complexity 1 33 0 31 0 0 0 chr9 11504854 11504885 -130766559 + AT_rich Low_complexity Low_complexity 1 31 0 180 360 30 30 chr9 11506573 11506673 -130764771 + MER5A DNA MER1_type 69 168 -21 21 0 0 0 chr9 11506969 11506990 -130764454 + AT_rich Low_complexity Low_complexity 1 21 0 214 247 14 27 chr9 11507829 11507902 -130763542 + T-rich Low_complexity Low_complexity 6 77 0 659 233 7 20 chr9 11508314 11508464 -130762980 + MER5A DNA MER1_type 5 152 -37 368 283 104 40 chr9 11508574 11508717 -130762727 - MLT1K LTR MaLR -338 250 93 531 0 0 0 chr9 11508717 11508776 -130762668 + (TAAA)n Simple_repeat Simple_repeat 2 60 0 368 283 104 40 chr9 11508776 11508805 -130762639 - MLT1K LTR MaLR -495 93 67 2028 137 0 0 chr9 11509663 11509962 -130761482 - AluSx SINE Alu -13 299 1 1333 224 34 31 chr9 11509974 11510390 -130761054 + LTR52 LTR ERVL 3 419 -2 1775 157 10 7 chr9 11510504 11510803 -130760641 - AluSx SINE Alu -10 302 3 23 54 0 0 chr9 11512010 11512047 -130759397 + AT_rich Low_complexity Low_complexity 1 37 0 24 77 0 0 chr9 11512074 11512126 -130759318 + AT_rich Low_complexity Low_complexity 1 52 0 1347 112 4 13 chr9 11513198 11513518 -130757926 - AluSp SINE Alu -15 298 11 602 227 0 0 chr9 11513530 11513662 -130757782 - FLAM_C SINE Alu -1 132 1 23 54 0 0 chr9 11513755 11513792 -130757652 + AT_rich Low_complexity Low_complexity 1 37 0 432 82 0 0 chr9 11513957 11514018 -130757426 + (CA)n Simple_repeat Simple_repeat 2 62 0 21 36 0 0 chr9 11516969 11516997 -130754447 + AT_rich Low_complexity Low_complexity 1 28 0 200 143 24 0 chr9 11518163 11518205 -130753239 + (TA)n Simple_repeat Simple_repeat 1 43 0 453 99 4 0 chr9 11520759 11520829 -130750615 - L1PA16 LINE L1 -1 6155 6084 600 305 106 7 chr9 11520830 11521112 -130750332 - LTR16C LTR ERVL -5 486 177 1486 215 0 16 chr9 11521529 11521841 -130749603 + AluJo SINE Alu 1 307 -5 1329 220 87 32 chr9 11521874 11522220 -130749224 + MLT1A1 LTR MaLR 1 365 0 2386 67 0 6 chr9 11525124 11525437 -130746007 - AluY SINE Alu 0 311 1 350 305 69 93 chr9 11526454 11526818 -130744626 + L1ME4a LINE L1 5530 5884 -237 229 227 15 36 chr9 11527850 11527937 -130743507 + CT-rich Low_complexity Low_complexity 1 134 0 558 271 40 13 chr9 11528375 11528526 -130742918 + MER45A DNA AcHobo 1 155 -23 248 170 75 0 chr9 11529007 11529060 -130742384 + MIR SINE MIR 69 125 -137 * 277 276 138 46 chr9 11529045 11529241 -130742203 + L2 LINE L2 3100 3313 0 335 222 172 0 chr9 11529799 11529898 -130741546 - MER3 DNA MER1_type -13 196 81 7587 22 1 7 chr9 11530029 11531055 -130740389 + L1PA3 LINE L1 5135 6155 0 781 226 0 6 chr9 11531223 11531387 -130740057 - MER3 DNA MER1_type -46 163 1 213 272 154 62 chr9 11531586 11531781 -130739663 + MIR SINE MIR 1 213 -49 262 320 0 0 chr9 11531949 11532024 -130739420 + L2 LINE L2 3235 3309 -4 252 277 85 0 chr9 11532201 11532295 -130739149 + MIR3 SINE MIR 100 201 -7 240 335 61 30 chr9 11533618 11533782 -130737662 + MLT1K LTR MaLR 160 328 -260 22 0 0 0 chr9 11534038 11534060 -130737384 + AT_rich Low_complexity Low_complexity 1 22 0 219 167 24 0 chr9 11534115 11534157 -130737287 + (TTG)n Simple_repeat Simple_repeat 2 44 0 195 42 0 0 chr9 11534308 11534332 -130737112 + (TTTA)n Simple_repeat Simple_repeat 4 27 0 1364 183 22 51 chr9 11534481 11534792 -130736652 - AluJb SINE Alu -10 302 1 21 71 0 0 chr9 11535718 11535760 -130735684 + AT_rich Low_complexity Low_complexity 1 42 0 202 263 26 13 chr9 11536290 11536366 -130735078 + (CATATA)n Simple_repeat Simple_repeat 4 80 0 723 303 87 16 chr9 11536479 11536915 -130734529 - L1ME3A LINE L1 -225 5945 5479 462 271 94 39 chr9 11537027 11537388 -130734056 - L1ME3A LINE L1 -856 5290 4910 186 49 49 24 chr9 11538394 11538435 -130733009 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 5450 27 0 0 chr9 11538446 11539085 -130732359 - L1PA4 LINE L1 -3 6152 5514 4533 39 5 0 chr9 11539085 11539756 -130731688 + L1PA4 LINE L1 4827 5499 -656 25 0 0 0 chr9 11539890 11539915 -130731529 + AT_rich Low_complexity Low_complexity 1 25 0 243 0 0 0 chr9 11539983 11540010 -130731434 + (TC)n Simple_repeat Simple_repeat 2 28 0 234 105 0 0 chr9 11541038 11541076 -130730368 + (CA)n Simple_repeat Simple_repeat 1 38 0 347 269 67 37 chr9 11541934 11542068 -130729376 + MIR SINE MIR 6 143 -119 1997 149 3 20 chr9 11542130 11542473 -130728971 - MER1B DNA MER1_type 0 337 1 1303 159 10 0 chr9 11543970 11544177 -130727267 + L1PA13 LINE L1 1 209 -6578 637 136 0 0 chr9 11544322 11544433 -130727011 + L1PA8 LINE L1 6022 6171 -1 216 97 0 0 chr9 11544675 11544706 -130726738 + (TG)n Simple_repeat Simple_repeat 2 32 0 185 237 68 17 chr9 11544928 11544987 -130726457 + MIR SINE MIR 85 146 -62 243 141 31 62 chr9 11545273 11545337 -130726107 + LTR66 LTR ERVL 402 463 -147 218 313 0 0 chr9 11546230 11546297 -130725147 + CT-rich Low_complexity Low_complexity 2 68 0 719 238 18 0 chr9 11547976 11548144 -130723300 + MLT1D LTR MaLR 335 505 0 2262 100 13 0 chr9 11548388 11548687 -130722757 - AluSx SINE Alu -9 303 1 21 0 0 0 chr9 11548833 11548854 -130722590 + AT_rich Low_complexity Low_complexity 1 21 0 841 109 7 43 chr9 11549197 11549335 -130722109 - L1PA16 LINE L1 -1 6165 6033 189 0 0 0 chr9 11549338 11549359 -130722085 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1420 111 5 0 chr9 11549369 11549601 -130721843 - L1PA8 LINE L1 0 6172 5955 947 85 0 8 chr9 11549601 11549730 -130721714 + L1PA8 LINE L1 5796 5923 -208 * 4591 128 46 7 chr9 11549725 11550483 -130720961 - L1PA16 LINE L1 -125 6041 5254 21 0 0 0 chr9 11551164 11551185 -130720259 + AT_rich Low_complexity Low_complexity 1 21 0 698 332 12 16 chr9 11551456 11551712 -130719732 + MIR SINE MIR 2 256 -6 2243 50 0 84 chr9 11553932 11554255 -130717189 - AluY SINE Alu -15 296 1 207 100 0 0 chr9 11554660 11554690 -130716754 + (A)n Simple_repeat Simple_repeat 1 30 0 26 64 0 0 chr9 11555675 11555722 -130715722 + AT_rich Low_complexity Low_complexity 1 47 0 229 89 44 0 chr9 11556182 11556227 -130715217 + (CA)n Simple_repeat Simple_repeat 2 48 0 21 0 0 0 chr9 11557931 11557952 -130713492 + AT_rich Low_complexity Low_complexity 1 21 0 264 30 0 0 chr9 11558905 11558938 -130712506 + (CA)n Simple_repeat Simple_repeat 2 34 0 446 284 46 46 chr9 11559220 11559438 -130712006 + L2 LINE L2 3000 3217 -96 21 71 0 0 chr9 11560386 11560428 -130711016 + AT_rich Low_complexity Low_complexity 1 42 0 252 253 113 27 chr9 11560785 11560801 -130710643 - L1MA10 LINE L1 -3 6331 6316 1281 211 64 36 chr9 11560801 11561189 -130710255 - L1ME2 LINE L1 -8 6156 5758 39 0 0 0 chr9 11561369 11561408 -130710036 + AT_rich Low_complexity Low_complexity 1 39 0 226 211 14 56 chr9 11561544 11561615 -130709829 + MLT1J LTR MaLR 3 70 -472 519 237 137 80 chr9 11562298 11562547 -130708897 + MLT1F1 LTR MaLR 278 565 -2 230 250 0 0 chr9 11563036 11563088 -130708356 + LTR30 LTR ERV1 1 52 -670 621 180 41 95 chr9 11563088 11563353 -130708091 + LTR12 LTR ERV1 55 258 -456 248 271 8 78 chr9 11563353 11563482 -130707962 + LTR30 LTR ERV1 524 643 -79 707 100 0 0 chr9 11563484 11563584 -130707860 + LTR12 LTR ERV1 615 714 0 421 255 11 0 chr9 11563711 11563805 -130707639 - MER5A DNA MER1_type -86 103 9 32 0 0 0 chr9 11566121 11566153 -130705291 + AT_rich Low_complexity Low_complexity 1 32 0 216 325 81 31 chr9 11566549 11566709 -130704735 - MIR SINE MIR -58 204 37 21 36 0 0 chr9 11567051 11567079 -130704365 + AT_rich Low_complexity Low_complexity 1 28 0 183 123 0 53 chr9 11567548 11567605 -130703839 + (TA)n Simple_repeat Simple_repeat 2 55 0 259 316 73 37 chr9 11569002 11569138 -130702306 + MIR3 SINE MIR 17 157 -51 466 16 32 0 chr9 11569148 11569211 -130702233 + (TG)n Simple_repeat Simple_repeat 2 66 0 392 291 7 43 chr9 11569404 11569545 -130701899 + MLT1J LTR MaLR 24 159 -352 28 0 0 0 chr9 11571597 11571625 -130699819 + AT_rich Low_complexity Low_complexity 1 28 0 182 255 0 0 chr9 11572069 11572116 -130699328 + MER5C DNA MER1_type 159 205 -119 821 227 29 0 chr9 11574023 11574195 -130697249 + MIR SINE MIR 86 262 0 21 0 0 0 chr9 11574935 11574956 -130696488 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr9 11577681 11577711 -130693733 + AT_rich Low_complexity Low_complexity 1 30 0 252 239 56 0 chr9 11578520 11578591 -130692853 + MIR3 SINE MIR 120 194 -14 23 0 0 0 chr9 11578604 11578627 -130692817 + AT_rich Low_complexity Low_complexity 1 23 0 195 42 0 0 chr9 11582686 11582710 -130688734 + (A)n Simple_repeat Simple_repeat 1 24 0 392 297 21 102 chr9 11583173 11583456 -130687988 - L1M2 LINE L1 -5720 1129 870 28 29 0 0 chr9 11583575 11583610 -130687834 + GC_rich Low_complexity Low_complexity 1 35 0 24 32 0 0 chr9 11583653 11583684 -130687760 + GC_rich Low_complexity Low_complexity 1 31 0 180 0 0 0 chr9 11583922 11583942 -130687502 + (TTA)n Simple_repeat Simple_repeat 2 21 0 205 182 0 0 chr9 11585106 11585139 -130686305 + polypyrimidine Low_complexity Low_complexity 2 34 0 451 269 44 76 chr9 11587350 11587599 -130683845 + LTR33 LTR ERVL 1 241 -280 1680 233 22 80 chr9 11587997 11588585 -130682859 + MLT2B3 LTR ERVL 1 554 0 1932 125 24 0 chr9 11588665 11588952 -130682492 + AluSg SINE Alu 1 294 -16 24 0 0 0 chr9 11589379 11589403 -130682041 + AT_rich Low_complexity Low_complexity 1 24 0 1374 192 43 14 chr9 11589628 11589909 -130681535 - AluJb SINE Alu -23 289 1 372 286 62 50 chr9 11589910 11590071 -130681373 - MIR SINE MIR -89 173 11 21 57 0 0 chr9 11590717 11590752 -130680692 + AT_rich Low_complexity Low_complexity 1 35 0 2015 122 10 0 chr9 11591382 11591678 -130679766 - AluSg SINE Alu -11 299 1 43 56 0 0 chr9 11592692 11592763 -130678681 + AT_rich Low_complexity Low_complexity 1 71 0 2577 151 9 14 chr9 11593139 11593569 -130677875 - MSTA LTR MaLR 0 428 1 6791 194 61 0 chr9 11593569 11594851 -130676593 - MSTA-int LTR MaLR 0 1651 292 341 359 23 8 chr9 11597066 11597197 -130674247 + MIR SINE MIR 2 134 -128 302 232 172 10 chr9 11597242 11597341 -130674103 + MIR SINE MIR 114 228 -34 218 347 163 0 chr9 11598525 11598623 -130672821 + MIR SINE MIR 75 188 -74 22 70 0 0 chr9 11598832 11598875 -130672569 + AT_rich Low_complexity Low_complexity 1 43 0 304 272 64 56 chr9 11599152 11599277 -130672167 + MIR SINE MIR 64 189 -73 22 0 0 0 chr9 11599398 11599420 -130672024 + AT_rich Low_complexity Low_complexity 1 22 0 248 211 39 102 chr9 11599995 11600123 -130671321 + MLT1L LTR MaLR 492 611 -4 23 0 0 0 chr9 11600163 11600186 -130671258 + AT_rich Low_complexity Low_complexity 1 23 0 210 143 0 0 chr9 11600460 11600495 -130670949 + (CA)n Simple_repeat Simple_repeat 2 36 0 222 381 17 8 chr9 11600804 11600922 -130670522 - MIR3 SINE MIR 0 208 90 2102 113 0 0 chr9 11601040 11601349 -130670095 + AluSx SINE Alu 1 309 0 256 254 0 15 chr9 11602396 11602463 -130668981 - MLT1K LTR MaLR -18 570 505 261 0 0 0 chr9 11602560 11602589 -130668855 + (A)n Simple_repeat Simple_repeat 1 29 0 364 313 61 0 chr9 11603737 11603884 -130667560 - MIR SINE MIR -16 246 91 27 0 0 0 chr9 11604258 11604285 -130667159 + AT_rich Low_complexity Low_complexity 1 27 0 560 287 37 53 chr9 11604299 11604599 -130666845 + LTR16B LTR ERVL 11 305 -159 2316 81 7 3 chr9 11604816 11605126 -130666318 + AluY SINE Alu 1 311 0 279 287 121 67 chr9 11605164 11605792 -130665652 - L1M4 LINE L1 -1088 5058 4397 255 61 0 0 chr9 11607170 11607203 -130664241 + (TG)n Simple_repeat Simple_repeat 2 34 0 358 286 48 24 chr9 11607222 11607348 -130664096 - MIR SINE MIR -78 184 56 360 200 40 0 chr9 11607460 11607535 -130663909 - L2 LINE L2 0 3313 3236 261 372 84 5 chr9 11607678 11607869 -130663575 - L2 LINE L2 -358 2956 2751 1208 251 48 59 chr9 11608260 11608755 -130662689 + MLT1D LTR MaLR 1 490 -15 234 289 109 55 chr9 11608767 11608895 -130662549 + L2 LINE L2 3177 3311 -2 666 373 90 9 chr9 11608903 11609453 -130661991 + L2 LINE L2 2716 3309 -4 849 214 42 33 chr9 11610226 11610352 -130661092 - MER34 LTR ERV1 0 542 412 2012 144 129 28 chr9 11610352 11610740 -130660704 - MSTA LTR MaLR -1 427 1 849 214 42 33 chr9 11610740 11610828 -130660616 - MER34 LTR ERV1 -130 412 326 857 240 72 12 chr9 11610860 11611110 -130660334 - MER34 LTR ERV1 -277 265 1 306 0 0 0 chr9 11611356 11611390 -130660054 + (TTA)n Simple_repeat Simple_repeat 3 36 0 1188 48 0 0 chr9 11611390 11611536 -130659908 - L1PA5 LINE L1 -18 6136 5991 259 341 148 28 chr9 11611810 11612027 -130659417 - MIR SINE MIR -1 261 19 373 313 7 21 chr9 11613480 11613624 -130657820 - MIR SINE MIR -51 211 70 293 301 26 26 chr9 11615365 11615478 -130655966 - MIR SINE MIR -60 202 90 252 302 12 12 chr9 11616098 11616184 -130655260 + (TA)n Simple_repeat Simple_repeat 1 86 0 22 70 0 0 chr9 11617841 11617884 -130653560 + AT_rich Low_complexity Low_complexity 1 43 0 259 309 95 0 chr9 11617986 11618070 -130653374 + MIR SINE MIR 41 132 -76 1363 196 21 25 chr9 11618191 11618476 -130652968 + AluJo SINE Alu 1 284 -28 380 316 26 0 chr9 11619781 11619895 -130651549 - L2 LINE L2 0 3313 3197 331 346 13 6 chr9 11620611 11620767 -130650677 - L1MC4a LINE L1 -472 7336 7180 8373 229 28 82 chr9 11620930 11623638 -130647806 + L1M2 LINE L1 1 2564 -4285 10886 79 26 6 chr9 11723644 11725922 -130545522 + L1PA4 LINE L1 3849 6154 -1 303 210 61 31 chr9 11726054 11726186 -130545258 - L1MC4a LINE L1 -1289 6507 6382 1154 276 58 11 chr9 11726195 11726575 -130544869 + L1MCc LINE L1 19 416 -6007 203 103 26 0 chr9 11726576 11726615 -130544829 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 186 43 0 0 chr9 11726623 11726646 -130544798 + (GA)n Simple_repeat Simple_repeat 2 24 0 389 348 11 28 chr9 11727515 11727693 -130543751 - MER5A DNA MER1_type -6 183 9 44 46 0 0 chr9 11727840 11727905 -130543539 + AT_rich Low_complexity Low_complexity 1 65 0 382 294 62 56 chr9 11728049 11728209 -130543235 + MIR SINE MIR 28 188 -74 467 355 82 38 chr9 11728387 11728753 -130542691 + L2 LINE L2 2582 2963 -351 275 365 69 13 chr9 11728875 11729034 -130542410 + L2 LINE L2 3104 3271 -1 257 319 0 0 chr9 11729636 11729708 -130541736 - L2 LINE L2 -9 3263 3192 388 300 119 0 chr9 11730346 11730506 -130540938 - MIR SINE MIR -69 193 15 267 333 69 38 chr9 11730913 11731072 -130540372 + L3 LINE CR1 1400 1563 -14 2016 148 0 0 chr9 11732888 11733192 -130538252 + AluSx SINE Alu 1 304 -8 268 132 0 0 chr9 11734407 11734445 -130536999 - THE1B LTR MaLR 0 428 391 620 160 0 0 chr9 11734447 11734553 -130536891 + AluSg/x SINE Alu 203 308 -2 2129 120 37 3 chr9 11734569 11734894 -130536550 - THE1B LTR MaLR -28 336 1 2149 154 76 5 chr9 11735386 11735808 -130535636 - L1MA4 LINE L1 -1 6299 5848 292 379 47 18 chr9 11736794 11736963 -130534481 + LTR16A LTR ERVL 1 174 -276 440 261 18 18 chr9 11737075 11737240 -130534204 + MER115 DNA AcHobo 505 669 -24 1011 159 43 0 chr9 11738337 11738500 -130532944 + AluSg/x SINE Alu 122 291 -21 5999 90 2 18 chr9 11738532 11739417 -130532027 - L1PA7 LINE L1 -846 5300 4430 6342 72 2 0 chr9 11739417 11740252 -130531192 + L1PA7 LINE L1 5317 6153 -1 1714 84 0 4 chr9 11740274 11740500 -130530944 + AluY SINE Alu 27 251 -60 315 300 12 0 chr9 11741000 11741080 -130530364 + MIR SINE MIR 2 82 -180 24 53 0 0 chr9 11741127 11741165 -130530279 + AT_rich Low_complexity Low_complexity 1 38 0 251 300 14 0 chr9 11741372 11741442 -130530002 + MIR SINE MIR 173 243 -19 1859 158 0 16 chr9 11742528 11742839 -130528605 + AluSx SINE Alu 3 308 -4 371 279 67 36 chr9 11742950 11743115 -130528329 + MER5A DNA MER1_type 4 173 -16 344 246 0 123 chr9 11743282 11743404 -130528040 - MER5B DNA MER1_type -71 107 1 1186 244 154 60 chr9 11743468 11743981 -130527463 + MLT1E2 LTR MaLR 1 565 -61 315 0 0 0 chr9 11743981 11744016 -130527428 + (TG)n Simple_repeat Simple_repeat 2 36 0 302 0 26 0 chr9 11744052 11744090 -130527354 + (TG)n Simple_repeat Simple_repeat 2 40 0 882 121 161 15 chr9 11744121 11744320 -130527124 - L1MA3 LINE L1 -1 6304 6077 3844 71 4 0 chr9 11744437 11744944 -130526500 + L1PA7 LINE L1 5643 6151 -3 427 267 141 7 chr9 11745120 11745255 -130526189 - MIR SINE MIR -10 252 100 186 295 85 62 chr9 11745290 11745419 -130526025 - MIR SINE MIR -74 188 57 444 19 0 0 chr9 11746156 11746209 -130525235 + (GA)n Simple_repeat Simple_repeat 2 54 0 5553 40 3 0 chr9 11746755 11747425 -130524019 - L1PA4 LINE L1 -2 6153 5482 9836 32 0 2 chr9 11747425 11748618 -130522826 + L1P LINE L1 3213 4402 -1744 1362 204 11 15 chr9 11748627 11748892 -130522552 - AluJo SINE Alu -22 290 27 264 296 64 54 chr9 11748926 11749206 -130522238 + L1MC/D LINE L1 5607 5889 -1919 416 280 91 88 chr9 11749227 11749591 -130521853 - MER93b LTR ERV1 0 373 9 26 0 0 0 chr9 11749595 11749621 -130521823 + AT_rich Low_complexity Low_complexity 1 26 0 229 295 124 23 chr9 11749725 11749854 -130521590 - MIR SINE MIR -120 142 1 204 226 0 0 chr9 11749956 11750009 -130521435 + A-rich Low_complexity Low_complexity 1 53 0 2666 176 44 21 chr9 11752131 11752919 -130518525 + L1PA16 LINE L1 4699 5506 -660 1288 144 5 5 chr9 11752919 11753127 -130518317 - L1PA16 LINE L1 -283 5883 5676 1062 124 0 0 chr9 11753145 11753298 -130518146 + L1PA16 LINE L1 5495 5647 -519 1581 128 152 3 chr9 11753400 11753723 -130517721 + L1PA16 LINE L1 5813 6179 0 2501 25 0 0 chr9 11753851 11754135 -130517309 + AluY SINE Alu 24 307 -4 313 288 161 0 chr9 11754793 11754911 -130516533 + L2 LINE L2 3136 3272 0 405 54 0 0 chr9 11755316 11755372 -130516072 + (CA)n Simple_repeat Simple_repeat 1 56 0 1803 153 27 7 chr9 11756985 11757280 -130514164 - AluSx SINE Alu -11 301 1 1140 219 124 22 chr9 11758220 11758630 -130512814 - L1ME3A LINE L1 -8 6231 5780 906 114 0 0 chr9 11758631 11758754 -130512690 + AluSc SINE Alu 166 288 -21 231 114 0 0 chr9 11758754 11758789 -130512655 + (GGGAGA)n Simple_repeat Simple_repeat 2 36 0 1341 156 0 41 chr9 11758802 11759046 -130512398 + AluJb SINE Alu 79 312 0 702 266 41 12 chr9 11759046 11759290 -130512154 - L1ME3A LINE L1 -463 5776 5526 523 206 79 52 chr9 11759344 11759633 -130511811 - L1ME3A LINE L1 -681 5552 5253 2879 13 0 0 chr9 11759633 11759947 -130511497 - AluYb8 SINE Alu -4 314 1 523 206 79 52 chr9 11759947 11760028 -130511416 - L1ME3A LINE L1 -980 5253 5176 4042 55 0 2 chr9 11760029 11760537 -130510907 - L1PA7 LINE L1 -12 6142 5636 479 48 0 0 chr9 11760537 11760599 -130510845 + L1P LINE L1 3577 3638 -2508 1253 248 142 41 chr9 11760897 11761389 -130510055 + MLT1F LTR MaLR 1 542 0 987 254 104 73 chr9 11761402 11762374 -130509070 - L1ME3A LINE L1 -1304 4911 3910 21 57 0 0 chr9 11762376 11762411 -130509033 + AT_rich Low_complexity Low_complexity 1 35 0 2002 147 0 0 chr9 11762571 11762878 -130508566 + AluSx SINE Alu 3 309 -3 180 111 0 0 chr9 11762885 11762912 -130508532 + (GAAAA)n Simple_repeat Simple_repeat 4 30 0 809 257 172 67 chr9 11762912 11764795 -130506649 - L1MEc LINE L1 -2300 3915 1869 2166 232 106 13 chr9 11765035 11765147 -130506297 - L1MA5 LINE L1 -25 6275 6175 312 27 0 0 chr9 11765147 11765184 -130506260 + (TG)n Simple_repeat Simple_repeat 2 38 0 2166 232 106 13 chr9 11765184 11766260 -130505184 - L1MA5 LINE L1 -125 6175 4955 6712 44 1 1 chr9 11766260 11767081 -130504363 + L1PA5 LINE L1 5332 6152 -2 365 222 14 0 chr9 11767109 11767181 -130504263 - L1MA5 LINE L1 -1179 4967 4895 3020 217 6 42 chr9 11767185 11767991 -130503453 + L1 LINE L1 3595 4371 -1775 2123 128 7 3 chr9 11768321 11768626 -130502818 - AluSg SINE Alu -4 306 1 22 0 0 0 chr9 11768956 11768978 -130502466 + AT_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr9 11769177 11769205 -130502239 + AT_rich Low_complexity Low_complexity 1 28 0 353 376 6 19 chr9 11769775 11769937 -130501507 + L3 LINE CR1 1388 1547 -30 1281 304 20 38 chr9 11769943 11770393 -130501051 - LTR33 LTR ERVL -18 503 62 400 392 73 18 chr9 11771812 11772242 -130499202 + L2 LINE L2 2613 3068 -245 348 176 0 0 chr9 11772320 11772388 -130499056 + (TATATG)n Simple_repeat Simple_repeat 4 71 0 207 0 0 0 chr9 11773427 11773450 -130497994 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 501 355 56 4 chr9 11774552 11774850 -130496594 - HERV16 LTR ERVL -2023 2973 2684 41323 62 4 2 chr9 11774869 11781000 -130490444 + L1PA5 LINE L1 11 6147 -7 274 380 52 10 chr9 11781024 11781411 -130490033 - HERV16 LTR ERVL -2819 2666 2264 618 382 16 13 chr9 11781467 11781839 -130489605 - HERV16 LTR ERVL -3487 2277 1905 356 391 37 14 chr9 11782041 11782335 -130489109 - HERV16 LTR ERVL -3412 1584 1284 2290 31 41 34 chr9 11783297 11783590 -130487854 - AluY SINE Alu -16 295 1 496 329 43 29 chr9 11783864 11784141 -130487303 - LTR16C LTR ERVL -18 473 193 319 322 85 43 chr9 11784337 11785286 -130486158 + L1M4 LINE L1 3553 4541 -1605 * 4423 47 0 9 chr9 11785272 11785286 -130486158 + L1PA4 LINE L1 5352 5365 -790 2181 35 0 0 chr9 11785286 11785545 -130485899 - L1PA5 LINE L1 -1 6153 5895 4423 47 0 9 chr9 11785545 11786079 -130485365 + L1PA5 LINE L1 5365 5895 -260 248 270 48 24 chr9 11786076 11786202 -130485242 + L1M4 LINE L1 4532 4660 -1486 * 5897 211 110 36 chr9 11786775 11788283 -130483161 + MER52A LTR ERV1 136 1755 0 237 265 15 0 chr9 11788292 11788360 -130483084 + L1M LINE L1 5349 5417 -747 3753 214 34 70 chr9 11788614 11789993 -130481451 - L1MB1 LINE L1 -1 5991 4611 389 207 12 0 chr9 11789993 11790075 -130481369 - MER52A LTR ERV1 -460 1295 1213 3753 214 34 70 chr9 11790075 11790409 -130481035 - L1MB1 LINE L1 -1381 4611 4266 2131 225 19 73 chr9 11790420 11790997 -130480447 - MLT2B3 LTR ERVL -8 546 1 14782 158 23 27 chr9 11790999 11793578 -130477866 - HERVL-B3 LTR ERVL -2 5652 3063 4467 64 0 10 chr9 11793578 11794156 -130477288 - L1PA7 LINE L1 0 6154 5583 14782 158 23 27 chr9 11794156 11794259 -130477185 - HERVL-B3 LTR ERVL -2591 3063 2961 1833 144 27 56 chr9 11794259 11794634 -130476810 + THE1B LTR MaLR 1 364 0 14782 158 23 27 chr9 11794634 11794966 -130476478 - HERVL-B3 LTR ERVL -2693 2961 2548 3052 257 76 48 chr9 11794972 11795391 -130476053 - L1MB1 LINE L1 -2813 3157 2751 2149 109 0 17 chr9 11795391 11795706 -130475738 - AluSx SINE Alu 0 312 1 3052 257 76 48 chr9 11795706 11796513 -130474931 - L1MB1 LINE L1 -3219 2751 1968 6584 155 23 17 chr9 11796513 11797732 -130473712 + Tigger3b DNA MER2_type 5 1230 -1 3052 257 76 48 chr9 11797732 11799489 -130471955 - L1MB1 LINE L1 -4002 1968 444 876 314 81 14 chr9 11799513 11799860 -130471584 - L1MB1 LINE L1 -5520 371 2 1532 193 4 0 chr9 11799866 11800130 -130471314 - AluJo SINE Alu -12 300 36 24 53 0 0 chr9 11800344 11800382 -130471062 + AT_rich Low_complexity Low_complexity 1 38 0 23 0 0 0 chr9 11800419 11800442 -130471002 + AT_rich Low_complexity Low_complexity 1 23 0 262 312 48 64 chr9 11800609 11800859 -130470585 - HERVL LTR ERVL -4383 1271 1026 22 0 0 0 chr9 11800924 11800946 -130470498 + AT_rich Low_complexity Low_complexity 1 22 0 325 361 68 21 chr9 11801336 11801527 -130469917 - L2 LINE L2 -469 2845 2646 1537 204 37 30 chr9 11801961 11802392 -130469052 + L1MB2 LINE L1 5738 6171 0 430 239 165 37 chr9 11802648 11802836 -130468608 - L1ME2 LINE L1 0 6164 5953 1738 184 7 3 chr9 11803065 11803364 -130468080 + AluJb SINE Alu 13 312 0 276 100 0 0 chr9 11803375 11803415 -130468029 + (GAAA)n Simple_repeat Simple_repeat 1 40 0 224 350 25 67 chr9 11803441 11803561 -130467883 - MER5A DNA MER1_type 0 189 75 361 282 98 23 chr9 11803617 11803791 -130467653 - MER5A DNA MER1_type 0 189 3 207 133 0 0 chr9 11804793 11804838 -130466606 + (A)n Simple_repeat Simple_repeat 1 45 0 1764 173 10 10 chr9 11805779 11806091 -130465353 - AluJb SINE Alu 0 312 1 1943 147 53 11 chr9 11806673 11807033 -130464411 + THE1C LTR MaLR 1 375 0 294 29 0 0 chr9 11809381 11809416 -130462028 + (CA)n Simple_repeat Simple_repeat 2 36 0 284 331 127 0 chr9 11809633 11809775 -130461669 + L2 LINE L2 2696 2855 -459 303 224 60 43 chr9 11810877 11810993 -130460451 + L1M4 LINE L1 2816 2933 -3213 1101 253 29 3 chr9 11811009 11811321 -130460123 - L1 LINE L1 -3318 2828 2509 525 248 21 0 chr9 11811328 11811469 -130459975 - L1M4 LINE L1 -1549 4597 4454 * 5690 121 18 14 chr9 11811465 11811738 -130459706 + L1PA16 LINE L1 5215 5485 -681 450 0 0 0 chr9 11811738 11811788 -130459656 + (TA)n Simple_repeat Simple_repeat 1 50 0 5690 121 18 14 chr9 11811788 11812081 -130459363 + L1PA16 LINE L1 5485 5775 -391 1320 195 31 69 chr9 11812081 11812399 -130459045 + AluJb SINE Alu 1 306 -6 5690 121 18 14 chr9 11812399 11812774 -130458670 + L1PA16 LINE L1 5775 6154 -12 189 74 0 0 chr9 11812887 11812914 -130458530 + (CA)n Simple_repeat Simple_repeat 2 28 0 255 200 0 0 chr9 11812958 11813013 -130458431 - L1MC4 LINE L1 -1340 6702 6648 1857 225 34 135 chr9 11813037 11813504 -130457940 - MLT2B3 LTR ERVL -26 498 75 431 143 0 0 chr9 11813600 11813670 -130457774 - MLT2B3 LTR ERVL -483 71 2 1391 237 56 31 chr9 11813675 11814194 -130457250 - L1M4 LINE L1 -1701 4445 3914 689 231 19 61 chr9 11814248 11814365 -130457079 + L1 LINE L1 2626 2732 -3414 1638 199 7 7 chr9 11814365 11814652 -130456792 - AluJb SINE Alu -23 289 3 689 231 19 61 chr9 11814652 11814746 -130456698 + L1 LINE L1 2732 2828 -3318 189 74 0 0 chr9 11814787 11814814 -130456630 + (CA)n Simple_repeat Simple_repeat 2 28 0 1654 154 96 9 chr9 11814845 11815190 -130456254 - THE1C LTR MaLR 0 375 1 8378 134 106 6 chr9 11815193 11816615 -130454829 - THE1C-int LTR MaLR -17 1563 1 1603 141 73 62 chr9 11816615 11816984 -130454460 - THE1C LTR MaLR 0 375 3 658 188 34 20 chr9 11816986 11817094 -130454350 - L1M4 LINE L1 -2289 3857 3745 2889 210 9 4 chr9 11817094 11817641 -130453803 - MER44D DNA MER2_type 0 605 1 658 188 34 20 chr9 11817641 11817681 -130453763 - L1M4 LINE L1 -2401 3745 3707 1750 24 9 0 chr9 11818639 11818850 -130452594 - L1PA4 LINE L1 0 6155 5943 961 242 50 0 chr9 11818890 11819109 -130452335 + MIR SINE MIR 3 232 -30 510 361 38 0 chr9 11819118 11819301 -130452143 + LTR16A LTR ERVL 5 194 -256 318 234 65 56 chr9 11820364 11820471 -130450973 + L3b LINE CR1 1329 1436 -147 2147 107 0 3 chr9 11820511 11820800 -130450644 + AluSq SINE Alu 1 288 -25 358 258 0 21 chr9 11820803 11820896 -130450548 + L1MC4 LINE L1 6614 6704 -1338 441 0 0 0 chr9 11820954 11821003 -130450441 + (TG)n Simple_repeat Simple_repeat 2 50 0 23 68 0 0 chr9 11821135 11821179 -130450265 + AT_rich Low_complexity Low_complexity 1 44 0 1909 146 44 0 chr9 11821430 11821725 -130449719 - AluSp SINE Alu -5 308 1 3281 99 18 16 chr9 11821766 11822259 -130449185 - L1PA14 LINE L1 -4 6157 5664 13948 214 22 20 chr9 11822260 11824691 -130446753 - L1P LINE L1 -882 5264 2823 2857 10 0 0 chr9 11824691 11825002 -130446442 - AluY SINE Alu 0 311 1 13948 214 22 20 chr9 11825002 11825880 -130445564 - L1P LINE L1 -3323 2823 1948 201 250 25 0 chr9 11826271 11826311 -130445133 + MIR3 SINE MIR 114 154 -54 23 0 0 0 chr9 11827182 11827205 -130444239 + AT_rich Low_complexity Low_complexity 1 23 0 2184 114 3 3 chr9 11827395 11827694 -130443750 - AluSq SINE Alu -12 301 3 198 385 31 43 chr9 11827767 11827928 -130443516 - L2 LINE L2 0 3272 3114 235 368 39 44 chr9 11828396 11828578 -130442866 + MIR SINE MIR 70 250 -12 1449 160 53 153 chr9 11830805 11831356 -130440088 + LTR54B LTR ERV1 1 496 -2 4897 124 28 35 chr9 11832359 11833340 -130438104 + pTR5 LTR ERV1 741 2025 -413 301 276 10 0 chr9 11833340 11833438 -130438006 + LTR30 LTR ERV1 544 642 -80 1233 163 34 5 chr9 11833445 11833654 -130437790 + pTR5 LTR ERV1 175 389 -2049 2173 91 0 30 chr9 11833785 11834083 -130437361 + AluY SINE Alu 5 293 -18 6708 140 33 25 chr9 11834990 11835744 -130435700 + Tigger3b DNA MER2_type 1 769 -2259 2235 92 14 0 chr9 11835744 11836036 -130435408 - AluY SINE Alu -13 298 3 6708 140 33 25 chr9 11836036 11836503 -130434941 + Tigger3b DNA MER2_type 769 1231 0 314 297 26 58 chr9 11836755 11836910 -130434534 - MIR SINE MIR -1 261 112 248 139 93 0 chr9 11836959 11837002 -130434442 + MLT1G1 LTR MaLR 1 47 -548 518 198 85 41 chr9 11837022 11837271 -130434173 + MLT1G1 LTR MaLR 194 567 0 282 329 33 26 chr9 11837271 11837423 -130434021 + MLT1G1-int LTR MaLR 1 153 -1218 3991 250 54 64 chr9 11837481 11838662 -130432782 - L1MEc LINE L1 -853 5362 4207 1799 126 33 0 chr9 11838662 11838932 -130432512 - AluSg SINE Alu -6 304 26 3991 250 54 64 chr9 11838932 11839708 -130431736 - L1MEc LINE L1 -2008 4207 3425 1837 255 90 13 chr9 11839709 11840231 -130431213 - MLT1F1 LTR MaLR -5 562 1 2446 265 79 15 chr9 11840264 11840405 -130431039 - L1MEc LINE L1 -2827 3388 3257 1213 234 31 0 chr9 11840405 11840695 -130430749 - AluJo SINE Alu -13 299 1 2446 265 79 15 chr9 11840695 11842182 -130429262 - L1MEc LINE L1 -2958 3257 1703 348 0 58 0 chr9 11842261 11842313 -130429131 + (TTA)n Simple_repeat Simple_repeat 3 57 0 7463 21 3 0 chr9 11842313 11843732 -130427712 - L1PA3 LINE L1 -18 6137 4708 685 245 83 0 chr9 11843853 11844106 -130427338 - L1MC3 LINE L1 -1 7784 7511 21101 30 2 0 chr9 11845782 11848341 -130423103 - L1PA3 LINE L1 -784 5362 2800 6806 19 0 0 chr9 11848341 11849155 -130422289 + L1PA3 LINE L1 5354 6167 0 290 291 58 12 chr9 11849527 11849613 -130421831 + MIR SINE MIR 19 108 -154 808 213 6 22 chr9 11849916 11850099 -130421345 + AluJb SINE Alu 132 311 -1 287 227 13 0 chr9 11850707 11850782 -130420662 + (TA)n Simple_repeat Simple_repeat 2 77 0 346 273 84 0 chr9 11851952 11852095 -130419349 + LTR16A1 LTR ERVL 299 453 -4 277 272 114 26 chr9 11852183 11852297 -130419147 + HAL1 LINE L1 258 381 -2126 707 296 100 34 chr9 11852642 11853320 -130418124 + HAL1 LINE L1 817 1539 -968 384 313 40 7 chr9 11853342 11853492 -130417952 + HAL1 LINE L1 1619 1773 -734 656 288 123 48 chr9 11853494 11854001 -130417443 - L2 LINE L2 -98 3215 2648 3219 43 0 0 chr9 11854001 11854396 -130417048 + L1PA4 LINE L1 5758 6152 -3 656 288 123 48 chr9 11854396 11854432 -130417012 - L2 LINE L2 -665 2648 2616 1413 153 16 28 chr9 11854894 11855143 -130416301 - L1PB3 LINE L1 0 6154 5909 211 220 138 88 chr9 11855974 11856133 -130415311 - L2 LINE L2 -37 3276 3110 23 0 0 0 chr9 11856250 11856273 -130415171 + AT_rich Low_complexity Low_complexity 1 23 0 1850 262 82 39 chr9 11856547 11857991 -130413453 + L1ME LINE L1 10 1505 -4575 306 286 165 9 chr9 11857991 11858215 -130413229 + L1ME LINE L1 3522 3780 -2300 2127 255 71 38 chr9 11858326 11859596 -130411848 + L1ME LINE L1 4298 5600 -500 28 29 0 0 chr9 11862601 11862636 -130408808 + AT_rich Low_complexity Low_complexity 1 35 0 269 235 12 0 chr9 11862923 11863008 -130408436 + (CATA)n Simple_repeat Simple_repeat 3 88 0 332 278 111 12 chr9 11864854 11864985 -130406459 + MIR SINE MIR 11 151 -57 5548 116 8 0 chr9 11864989 11865816 -130405628 + L1PA13 LINE L1 5310 6143 -20 29 47 0 0 chr9 11865859 11865902 -130405542 + AT_rich Low_complexity Low_complexity 1 43 0 183 42 0 0 chr9 11866156 11866180 -130405264 + (CA)n Simple_repeat Simple_repeat 1 24 0 394 243 98 75 chr9 11866747 11866920 -130404524 + MER5B DNA MER1_type 2 178 0 262 257 14 0 chr9 11867028 11867102 -130404342 + (CA)n Simple_repeat Simple_repeat 1 75 0 2602 39 0 7 chr9 11867166 11867474 -130403970 + AluY SINE Alu 1 306 -5 199 286 57 29 chr9 11867670 11867740 -130403704 + MIR SINE MIR 82 153 -55 1643 147 55 68 chr9 11868219 11868599 -130402845 - THE1C LTR MaLR 0 375 1 9533 126 63 6 chr9 11868599 11870094 -130401350 - THE1C-int LTR MaLR 0 1580 1 1510 167 66 74 chr9 11870094 11870472 -130400972 - THE1C LTR MaLR 0 375 1 26 0 0 0 chr9 11870594 11870620 -130400824 + AT_rich Low_complexity Low_complexity 1 26 0 34 42 0 0 chr9 11870924 11870972 -130400472 + AT_rich Low_complexity Low_complexity 1 48 0 261 297 66 0 chr9 11871082 11871173 -130400271 - MIR SINE MIR -62 200 104 22 0 0 0 chr9 11872321 11872343 -130399101 + AT_rich Low_complexity Low_complexity 1 22 0 664 295 71 5 chr9 11872636 11872860 -130398584 + MIR SINE MIR 13 251 -11 416 226 81 24 chr9 11872987 11873111 -130398333 + L2 LINE L2 3183 3313 0 183 304 170 7 chr9 11873432 11873567 -130397877 - MIR SINE MIR -11 251 95 2131 160 38 30 chr9 11873582 11874131 -130397313 - MLT2A2 LTR ERVL 0 554 1 211 304 14 29 chr9 11874577 11874646 -130396798 - L2 LINE L2 -1 3312 3245 1105 221 0 32 chr9 11875297 11875550 -130395894 + L1MC3 LINE L1 6548 6792 -993 241 292 135 22 chr9 11875584 11875673 -130395771 + MIR SINE MIR 32 130 -78 2071 101 6 38 chr9 11876343 11876661 -130394783 - AluSp SINE Alu -1 312 5 2487 77 0 0 chr9 11876768 11877078 -130394366 + AluY SINE Alu 1 310 -1 180 111 0 0 chr9 11877779 11877806 -130393638 + (T)n Simple_repeat Simple_repeat 1 27 0 567 216 69 78 chr9 11879958 11880264 -130391180 - LTR37A LTR ERV1 -12 414 112 598 284 85 6 chr9 11880990 11881166 -130390278 + MIR SINE MIR 70 259 -3 2353 94 139 5 chr9 11881557 11881952 -130389492 + LTR7 LTR ERV1 1 448 -2 14533 111 6 26 chr9 11881954 11884764 -130386680 + HERVH LTR ERV1 1 2995 -4718 877 160 7 0 chr9 11884743 11884893 -130386551 + HERVH LTR ERV1 3140 3290 -4423 * 1598 121 12 0 chr9 11884892 11885132 -130386312 + HERVH LTR ERV1 3500 3742 -3971 7600 126 13 2 chr9 11885139 11886294 -130385150 + HERVH LTR ERV1 3993 5149 -2564 1418 125 19 0 chr9 11886295 11886511 -130384933 + HERVH LTR ERV1 5600 5819 -1894 2374 96 48 13 chr9 11886511 11886888 -130384556 + HERVH LTR ERV1 7324 7713 0 2241 96 152 18 chr9 11886888 11887283 -130384161 + LTR7 LTR ERV1 1 448 -2 635 77 0 22 chr9 11887283 11887374 -130384070 + LTR7 LTR ERV1 354 442 -8 2326 91 0 16 chr9 11887593 11887902 -130383542 - AluY SINE Alu -6 305 2 1540 168 44 24 chr9 11888948 11889246 -130382198 + AluJb SINE Alu 1 304 -8 617 186 8 0 chr9 11889552 11889676 -130381768 + L1MB4 LINE L1 6050 6174 -6 2037 47 3 10 chr9 11889766 11889777 -130381667 + L1PA4 LINE L1 5668 5678 -496 217 49 0 49 chr9 11889777 11889818 -130381626 + (TTTTA)n Simple_repeat Simple_repeat 1 39 0 2037 47 3 10 chr9 11889818 11890099 -130381345 + L1PA4 LINE L1 5678 5954 -220 270 0 0 0 chr9 11890392 11890422 -130381022 + (TG)n Simple_repeat Simple_repeat 1 30 0 238 265 0 0 chr9 11891773 11891822 -130379622 - L2 LINE L2 -5 3267 3219 3356 129 39 2 chr9 11892264 11892798 -130378646 + MER41C LTR ERV1 1 554 0 905 203 144 13 chr9 11893088 11893324 -130378120 + AluYa8 SINE Alu 44 310 0 283 340 10 0 chr9 11894439 11894536 -130376908 - L2 LINE L2 -19 3294 3197 2278 129 25 8 chr9 11894982 11895338 -130376106 - THE1B LTR MaLR 0 364 3 10908 108 1 32 chr9 11895344 11896967 -130374477 - THE1B-int LTR MaLR -4 1576 5 1109 146 0 16 chr9 11896968 11897153 -130374291 - THE1B LTR MaLR -6 358 177 11153 75 2 6 chr9 11897253 11899574 -130371870 + L1PA5 LINE L1 3848 6151 -3 1047 140 7 4 chr9 11899580 11901133 -130370311 + ALR/Alpha Satellite centromeric 1 1557 -34 1816 101 8 0 chr9 11901233 11901471 -130369973 - AluSq SINE Alu -73 240 1 2060 147 0 0 chr9 11901639 11901939 -130369505 + AluSx SINE Alu 1 300 -12 1799 127 48 4 chr9 11902221 11902489 -130368955 + AluSc SINE Alu 11 290 -19 1734 160 0 17 chr9 11902696 11902983 -130368461 + AluSx SINE Alu 1 282 -30 1636 170 37 0 chr9 11903180 11903474 -130367970 - AluSx SINE Alu 0 305 2 443 113 16 0 chr9 11904241 11904303 -130367141 - AluSg/x SINE Alu -134 176 114 1276 134 0 46 chr9 11904406 11904622 -130366822 + AluSq SINE Alu 95 300 -13 217 119 48 0 chr9 11904635 11904677 -130366767 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 2082 113 0 7 chr9 11905333 11905642 -130365802 + AluSg SINE Alu 1 307 0 1082 215 15 5 chr9 11905681 11905886 -130365558 - AluJo SINE Alu -30 282 76 2007 99 11 0 chr9 11905886 11906158 -130365286 - AluSx SINE Alu -35 277 3 650 163 8 16 chr9 11906193 11906316 -130365128 + FLAM_C SINE Alu 2 123 -10 923 100 21 29 chr9 11906332 11906472 -130364972 - AluJb SINE Alu -152 160 22 409 236 0 0 chr9 11906528 11906634 -130364810 - FRAM SINE Alu -8 168 63 301 258 171 69 chr9 11907241 11907458 -130363986 + L1M2 LINE L1 840 1078 -5771 2166 80 3 0 chr9 11907549 11907838 -130363606 + AluSg SINE Alu 1 290 -20 550 157 0 0 chr9 11907920 11908003 -130363441 + AluSg/x SINE Alu 205 287 -23 1329 136 5 5 chr9 11908058 11908264 -130363180 + AluJb SINE Alu 1 206 -106 422 172 46 23 chr9 11908273 11908360 -130363084 - AluJ/FLAM SINE Alu -223 89 1 943 172 108 135 chr9 11908491 11908787 -130362657 - AluJb SINE Alu -12 290 3 242 180 0 0 chr9 11908831 11908881 -130362563 - Alu SINE Alu -3 296 247 769 220 75 0 chr9 11910525 11910711 -130360733 - MER3 DNA MER1_type -1 208 9 462 180 40 30 chr9 11910908 11911008 -130360436 - MER5A DNA MER1_type -83 106 6 299 319 163 0 chr9 11911080 11911221 -130360223 + MIR SINE MIR 20 183 -79 26 0 0 0 chr9 11913012 11913038 -130358406 + AT_rich Low_complexity Low_complexity 1 26 0 3081 60 2 2 chr9 11913144 11913543 -130357901 - L1PA6 LINE L1 -2 6152 5754 2185 95 3 10 chr9 11914106 11914402 -130357042 + AluSp SINE Alu 1 294 -19 22 35 0 0 chr9 11915090 11915119 -130356325 + AT_rich Low_complexity Low_complexity 1 29 0 956 196 138 45 chr9 11915465 11915594 -130355850 + AluJo SINE Alu 1 116 -196 2200 99 24 0 chr9 11915594 11915886 -130355558 + AluSq SINE Alu 1 299 -14 956 196 138 45 chr9 11915886 11915980 -130355464 + AluJo SINE Alu 116 245 -67 491 310 167 58 chr9 11916418 11916541 -130354903 - L2 LINE L2 -10 3262 3154 1124 154 288 3 chr9 11916541 11916826 -130354618 - MER47A DNA MER2_type 0 366 1 491 310 167 58 chr9 11916826 11917607 -130353837 - L2 LINE L2 -118 3154 2228 2304 92 3 0 chr9 11918058 11918363 -130353081 - AluY SINE Alu -5 306 1 228 143 20 41 chr9 11918465 11918514 -130352930 + Alu SINE Alu 121 168 -135 2278 102 0 0 chr9 11918566 11918859 -130352585 - AluSg SINE Alu -17 293 1 1378 162 26 0 chr9 11918860 11919089 -130352355 + MER46A DNA MER2_type 2 236 0 557 203 15 30 chr9 11919660 11919793 -130351651 - FLAM_A SINE Alu 0 133 3 23 54 0 0 chr9 11920149 11920186 -130351258 + AT_rich Low_complexity Low_complexity 1 37 0 2251 92 0 0 chr9 11922031 11922315 -130349129 - AluSx SINE Alu -24 288 5 22 0 0 0 chr9 11923170 11923192 -130348252 + AT_rich Low_complexity Low_complexity 1 22 0 1936 166 0 13 chr9 11923192 11923500 -130347944 + AluJb SINE Alu 1 304 -8 4358 74 16 20 chr9 11923500 11924530 -130346914 - MER11A LTR ERVK 0 1266 1 406 295 45 0 chr9 11925043 11925155 -130346289 + MER5A DNA MER1_type 73 189 0 25 31 0 0 chr9 11926280 11926312 -130345132 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr9 11926753 11926781 -130344663 + AT_rich Low_complexity Low_complexity 1 28 0 650 339 40 49 chr9 11926824 11927252 -130344192 + MER45C DNA AcHobo 1 424 -529 407 300 58 0 chr9 11927249 11927439 -130344005 + MER45B DNA AcHobo 768 968 -72 * 472 211 0 0 chr9 11927441 11927536 -130343908 - MLT1E2 LTR MaLR -480 146 52 2200 103 66 6 chr9 11928187 11928535 -130342909 - MER51B LTR ERV1 -8 369 1 415 129 0 0 chr9 11928537 11928599 -130342845 - MER51B-int LTR ERV1 -1 7815 7754 21 57 0 0 chr9 11928795 11928830 -130342614 + AT_rich Low_complexity Low_complexity 1 35 0 231 133 0 0 chr9 11928830 11928875 -130342569 + (TA)n Simple_repeat Simple_repeat 2 46 0 467 244 91 17 chr9 11934563 11934739 -130336705 - MIR SINE MIR 0 262 74 202 358 15 45 chr9 11935502 11935636 -130335808 - MIR SINE MIR -109 153 24 294 50 0 0 chr9 11935998 11936038 -130335406 + (TC)n Simple_repeat Simple_repeat 1 40 0 1056 349 49 25 chr9 11936280 11936907 -130334537 - L2 LINE L2 -830 2484 1843 200 211 0 0 chr9 11937269 11937307 -130334137 + (TTAG)n Simple_repeat Simple_repeat 3 40 0 739 321 57 46 chr9 11937833 11938394 -130333050 - L2 LINE L2 -1485 1829 1263 24 0 0 0 chr9 11938397 11938421 -130333023 + AT_rich Low_complexity Low_complexity 1 24 0 780 343 102 21 chr9 11938522 11939082 -130332362 + L2 LINE L2 1935 2541 -773 414 298 37 46 chr9 11939082 11939266 -130332178 - MER5B DNA MER1_type -1 177 10 273 398 37 12 chr9 11939357 11939518 -130331926 + L2 LINE L2 2608 2772 -542 571 355 13 4 chr9 11939766 11939994 -130331450 - MIR SINE MIR -2 260 31 5221 159 11 44 chr9 11940050 11940617 -130330827 - L1MA10 LINE L1 0 6334 5750 1582 126 57 4 chr9 11940617 11940864 -130330580 - AluSq SINE Alu -9 304 45 5221 159 11 44 chr9 11940864 11941586 -130329858 - L1MA10 LINE L1 -584 5750 5078 19267 91 9 2 chr9 11941935 11945492 -130325952 - L1PA7 LINE L1 -2 6152 2561 2136 126 0 0 chr9 11946798 11947083 -130324361 + AluSx SINE Alu 1 285 -27 21 0 0 0 chr9 11947083 11947104 -130324340 + AT_rich Low_complexity Low_complexity 1 21 0 297 233 0 0 chr9 11947415 11947475 -130323969 - MER33 DNA MER1_type -222 102 43 2029 135 0 14 chr9 11947626 11947923 -130323521 - AluSp SINE Alu -20 293 1 2107 134 7 0 chr9 11948417 11948722 -130322722 - AluSx SINE Alu -5 307 1 2183 138 0 0 chr9 11949216 11949521 -130321923 - AluSg SINE Alu -5 305 1 1163 141 6 3 chr9 11950393 11954290 -130317154 - ALR/Alpha Satellite centromeric 0 3910 1 1075 157 2 0 chr9 11954390 11955241 -130316203 - ALR/Alpha Satellite centromeric 0 852 1 843 202 26 26 chr9 11955624 11955817 -130315627 + MER46A DNA MER2_type 43 235 -1 610 219 62 12 chr9 11955826 11955986 -130315458 - MIR SINE MIR 0 262 95 191 362 79 31 chr9 11955979 11956106 -130315338 - MIR SINE MIR -57 151 19 * 260 266 13 38 chr9 11956700 11956779 -130314665 + MIR SINE MIR 156 232 -30 288 0 0 0 chr9 11958291 11958323 -130313121 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 424 233 188 7 chr9 11959172 11959311 -130312133 - MER5A DNA MER1_type -5 184 1 3367 215 66 27 chr9 11960225 11961062 -130310382 - L1MC3 LINE L1 -457 7328 6450 1957 159 0 0 chr9 11961062 11961364 -130310080 + AluSg SINE Alu 1 302 -8 3367 215 66 27 chr9 11961364 11961453 -130309991 - L1MC3 LINE L1 -1335 6450 6366 1723 196 0 0 chr9 11961625 11961921 -130309523 + AluJb SINE Alu 1 296 -16 1495 150 9 4 chr9 11962777 11963010 -130308434 + AluSp SINE Alu 1 234 -79 387 140 0 0 chr9 11963010 11963067 -130308377 - AluJ/FLAM SINE Alu -200 102 46 632 307 88 34 chr9 11963151 11963717 -130307727 - L1ME3A LINE L1 -310 5860 5264 642 194 129 48 chr9 11963892 11964140 -130307304 + MER33 DNA MER1_type 57 324 0 21 0 0 0 chr9 11964152 11964173 -130307271 + AT_rich Low_complexity Low_complexity 1 21 0 310 308 128 15 chr9 11964441 11964902 -130306542 - L1ME3A LINE L1 -1371 4775 4263 1517 163 31 7 chr9 11964991 11965285 -130306159 + AluSq SINE Alu 1 301 -12 192 287 0 0 chr9 11965326 11965427 -130306017 + (CAGAC)n Simple_repeat Simple_repeat 5 105 0 303 292 0 0 chr9 11965445 11965613 -130305831 + (CAGAC)n Simple_repeat Simple_repeat 3 170 0 300 270 0 0 chr9 11965702 11965828 -130305616 + (GACTG)n Simple_repeat Simple_repeat 3 128 0 219 224 0 0 chr9 11965840 11965889 -130305555 + (GACTG)n Simple_repeat Simple_repeat 1 49 0 212 211 14 0 chr9 11965890 11965961 -130305483 + (CAGAC)n Simple_repeat Simple_repeat 4 75 0 255 301 0 0 chr9 11965965 11966038 -130305406 + (GACTG)n Simple_repeat Simple_repeat 1 73 0 330 288 0 0 chr9 11966039 11966199 -130305245 + (CAGAC)n Simple_repeat Simple_repeat 4 163 0 402 297 0 0 chr9 11966203 11966321 -130305123 + (GACTG)n Simple_repeat Simple_repeat 3 120 0 285 283 0 0 chr9 11966324 11966476 -130304968 + (CAGAC)n Simple_repeat Simple_repeat 4 155 0 366 282 0 0 chr9 11966508 11966678 -130304766 + (CAGAC)n Simple_repeat Simple_repeat 3 172 0 412 187 7 29 chr9 11966730 11966823 -130304621 - AluJ/FLAM SINE Alu -240 62 1 1614 146 27 8 chr9 11967202 11967462 -130303982 + AluSq SINE Alu 49 313 0 1131 150 10 2 chr9 11967709 11970978 -130300466 + ALR/Alpha Satellite centromeric 1 3297 -4 1442 72 97 5 chr9 11970979 11971186 -130300258 - AluY SINE Alu -19 292 67 1212 136 5 8 chr9 11971192 11973292 -130298152 + ALR/Alpha Satellite centromeric 1 2094 -66 25 0 0 0 chr9 11976505 11976530 -130294914 + AT_rich Low_complexity Low_complexity 1 25 0 397 151 0 0 chr9 11977017 11977103 -130294341 + L1PA12 LINE L1 5932 6017 -151 1910 153 3 0 chr9 11977247 11977555 -130293889 - AluSx SINE Alu -3 309 1 965 336 24 16 chr9 11977592 11978135 -130293309 + L2 LINE L2 2683 3313 0 253 310 35 35 chr9 11978143 11978285 -130293159 + MIR SINE MIR 81 222 -40 21 0 0 0 chr9 11978722 11978743 -130292701 + AT_rich Low_complexity Low_complexity 1 21 0 3570 125 64 8 chr9 11979492 11980100 -130291344 - LTR12 LTR ERV1 0 1797 130 1251 129 5 3 chr9 11981714 11988664 -130282780 - ALR/Alpha Satellite centromeric 0 6961 1 4433 86 21 6 chr9 11988664 11989681 -130281763 - MER11A LTR ERVK 0 1266 1 1263 128 2 11 chr9 11989681 11992571 -130278873 - ALR/Alpha Satellite centromeric 0 2864 1 1286 121 2 1 chr9 11992583 11997914 -130273530 - ALR/Alpha Satellite centromeric 0 5336 1 1041 139 7 0 chr9 11998016 11998294 -130273150 - ALR/Alpha Satellite centromeric -3 279 1 289 241 175 51 chr9 11998850 11998987 -130272457 + MIR3 SINE MIR 29 182 -26 181 363 77 0 chr9 11999617 11999708 -130271736 - MIR SINE MIR 0 262 165 578 280 48 43 chr9 11999709 11999916 -130271528 - L2 LINE L2 -5 3308 3101 1623 177 11 11 chr9 11999931 12000208 -130271236 + AluJb SINE Alu 11 287 -25 22 56 0 0 chr9 12000210 12000246 -130271198 + AT_rich Low_complexity Low_complexity 1 36 0 198 273 26 39 chr9 12000251 12000328 -130271116 - L2 LINE L2 -207 3106 3031 5216 10 2 2 chr9 12000995 12001579 -130269865 + L1PA2 LINE L1 5478 6061 -94 9335 95 24 9 chr9 12001682 12001778 -130269666 - HERVL LTR ERVL -1047 4607 4514 2343 87 0 0 chr9 12001778 12002078 -130269366 - AluY SINE Alu -11 300 1 9335 95 24 9 chr9 12002078 12003252 -130268192 - HERVL LTR ERVL -1140 4514 3319 2402 144 23 0 chr9 12003252 12003605 -130267839 - THE1B LTR MaLR -3 361 1 417 333 73 20 chr9 12004638 12004842 -130266602 - MIR SINE MIR -3 259 45 224 80 120 0 chr9 12005206 12005256 -130266188 + (TATAA)n Simple_repeat Simple_repeat 5 60 0 21 0 0 0 chr9 12005267 12005288 -130266156 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 12005656 12005677 -130265767 + AT_rich Low_complexity Low_complexity 1 21 0 444 269 124 43 chr9 12006097 12006283 -130265161 + MLT1H1 LTR MaLR 7 207 -348 2867 276 77 59 chr9 12006351 12007498 -130263946 - L1MCc LINE L1 -4887 1536 438 186 43 0 0 chr9 12007498 12007521 -130263923 + (TC)n Simple_repeat Simple_repeat 2 24 0 2867 276 77 59 chr9 12007521 12007949 -130263495 - L1MCc LINE L1 -5985 438 19 309 214 65 31 chr9 12007950 12008090 -130263354 + L1MC4a LINE L1 6344 6507 -1289 41173 70 3 4 chr9 12008222 12014366 -130257078 - L1PA4 LINE L1 -1 6154 11 192 40 0 0 chr9 12014384 12014409 -130257035 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 2148 101 0 0 chr9 12014413 12014689 -130256755 - AluY SINE Alu -35 276 1 481 303 41 74 chr9 12014812 12015056 -130256388 - MLT1J LTR MaLR -60 451 216 516 359 11 6 chr9 12016352 12016533 -130254911 + MIR SINE MIR 11 192 -70 2606 158 59 9 chr9 12016589 12017031 -130254413 - MLT2C2 LTR ERVL 0 464 1 189 387 0 43 chr9 12018432 12018525 -130252919 + MIR SINE MIR 30 118 -90 2866 99 3 0 chr9 12018616 12018970 -130252474 - THE1A LTR MaLR 0 355 1 12104 107 3 1 chr9 12018971 12020547 -130250897 - THE1A-int LTR MaLR -1 1579 1 2831 102 3 0 chr9 12020547 12020901 -130250543 - THE1A LTR MaLR 0 355 1 327 175 16 0 chr9 12020965 12021028 -130250416 + MIR SINE MIR 86 149 -113 2317 95 3 13 chr9 12021030 12021345 -130250099 + AluSx SINE Alu 1 312 0 276 188 129 47 chr9 12021976 12022061 -130249383 + MLT1A1 LTR MaLR 95 186 -188 371 323 19 38 chr9 12022168 12022326 -130249118 - MIR SINE MIR -30 232 78 1378 199 29 19 chr9 12022465 12022777 -130248667 + MLT1A1 LTR MaLR 1 315 -50 236 314 154 0 chr9 12022816 12022922 -130248522 - MIR SINE MIR -69 139 46 830 251 120 43 chr9 12023103 12023423 -130248021 + MLT1I LTR MaLR 7 362 -47 2184 110 47 65 chr9 12023423 12023805 -130247639 - THE1C LTR MaLR 0 375 1 830 251 120 43 chr9 12023805 12023858 -130247586 + MLT1I LTR MaLR 362 409 0 252 253 107 0 chr9 12024043 12024118 -130247326 - Charlie8 DNA MER1_type -2236 181 99 246 261 81 54 chr9 12024243 12024354 -130247090 + MIR3 SINE MIR 55 168 -40 953 181 15 10 chr9 12025681 12025880 -130245564 + L1MA6 LINE L1 6099 6298 -2 371 367 28 17 chr9 12026040 12026217 -130245227 + MER5A DNA MER1_type 1 179 -10 682 296 29 15 chr9 12026228 12026434 -130245010 - MLT1K LTR MaLR -7 581 373 467 333 73 18 chr9 12026460 12026679 -130244765 - MIR SINE MIR -17 245 15 2136 139 0 13 chr9 12027235 12027544 -130243900 + AluSx SINE Alu 1 305 -7 351 253 119 36 chr9 12027742 12028037 -130243407 + MLT1G LTR MaLR 226 549 0 21 0 0 0 chr9 12028389 12028410 -130243034 + AT_rich Low_complexity Low_complexity 1 21 0 688 293 38 9 chr9 12028410 12028622 -130242822 - MIR SINE MIR -35 227 10 2395 39 0 0 chr9 12028689 12028969 -130242475 - L1P LINE L1 -1772 4374 4095 339 300 112 24 chr9 12029367 12029654 -130241790 + Tigger8 DNA MER2_type 237 548 -118 3212 206 28 84 chr9 12030556 12031582 -130239862 + LTR5 LTR ERVK 1 969 0 403 333 62 1 chr9 12032819 12033002 -130238442 + MIR SINE MIR 19 208 -39 323 103 0 17 chr9 12033794 12033852 -130237592 + (TC)n Simple_repeat Simple_repeat 1 57 0 2974 231 51 26 chr9 12034096 12034896 -130236548 + MER99 DNA DNA 5 824 -4 797 167 68 123 chr9 12035716 12035967 -130235477 - MLT2B1 LTR ERVL 0 520 284 7779 144 56 7 chr9 12035967 12037297 -130234147 - Ricksha DNA DNA -39 3207 1821 1528 135 139 0 chr9 12037295 12037547 -130233897 - Ricksha DNA DNA -2957 289 3 * 1222 211 61 22 chr9 12037550 12037862 -130233582 - MLT2B1 LTR ERVL -196 324 1 7689 98 6 11 chr9 12038087 12039136 -130232308 + HERVL LTR ERVL 4611 5654 0 3723 164 6 30 chr9 12039145 12039853 -130231591 + Tigger1 DNA MER2_type 1440 2130 -288 2096 194 112 7 chr9 12039858 12041452 -130229992 - SATR1 Satellite Satellite -140 1761 1 2038 190 95 30 chr9 12041479 12042509 -130228935 - SATR1 Satellite Satellite -20 1096 1 221 250 11 53 chr9 12042592 12042780 -130228664 + (TTA)n Simple_repeat Simple_repeat 1 180 0 2413 186 111 0 chr9 12042799 12044441 -130227003 + SATR1 Satellite Satellite 1 1823 -411 3247 50 3 0 chr9 12044607 12044985 -130226459 + L1PA4 LINE L1 5774 6152 -3 356 320 82 24 chr9 12045373 12045547 -130225897 + MIR3 SINE MIR 20 207 -1 1843 157 17 3 chr9 12045561 12045855 -130225589 + AluSp SINE Alu 2 299 -14 953 248 216 19 chr9 12046050 12046559 -130224885 - L2 LINE L2 -2 3311 2664 800 130 19 80 chr9 12046562 12046724 -130224720 + AluSg/x SINE Alu 138 289 -21 585 243 64 0 chr9 12046734 12046907 -130224537 - L2 LINE L2 -639 2675 2492 243 205 143 80 chr9 12046973 12047085 -130224359 + L2 LINE L2 3154 3272 0 979 146 31 28 chr9 12047207 12047415 -130224029 - AluSg/x SINE Alu -4 308 145 3362 71 5 5 chr9 12047518 12047941 -130223503 + L1PA6 LINE L1 5732 6154 0 862 180 50 0 chr9 12047941 12048102 -130223342 - THE1C LTR MaLR -206 169 1 26 0 0 0 chr9 12048540 12048566 -130222878 + AT_rich Low_complexity Low_complexity 1 26 0 244 100 100 0 chr9 12049768 12049808 -130221636 + MSTA LTR MaLR 385 428 0 532 284 59 49 chr9 12050002 12050393 -130221051 + L1MDa LINE L1 1525 1919 -4621 384 125 0 0 chr9 12050776 12050840 -130220604 + (CA)n Simple_repeat Simple_repeat 2 65 0 1972 141 0 0 chr9 12051026 12051330 -130220114 - AluSx SINE Alu 0 304 1 818 284 61 68 chr9 12051366 12052784 -130218660 + L1MDa LINE L1 2621 4028 -2512 238 306 24 0 chr9 12052968 12053053 -130218391 + L1MCc LINE L1 113 199 -6224 1392 280 39 2 chr9 12053126 12053583 -130217861 + L1MCc LINE L1 3032 3505 -3436 3780 146 64 40 chr9 12053773 12054528 -130216916 - LTR1 LTR ERV1 0 785 13 1206 62 19 0 chr9 12054836 12054998 -130216446 + L1PA7 LINE L1 5990 6154 0 186 43 0 0 chr9 12055109 12055132 -130216312 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 21 0 0 0 chr9 12055518 12055539 -130215905 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr9 12055640 12055669 -130215775 + AT_rich Low_complexity Low_complexity 1 29 0 3837 36 0 0 chr9 12055811 12056289 -130215155 + L1P LINE L1 2296 2773 -3373 897 296 154 28 chr9 12056748 12057598 -130213846 + HAL1 LINE L1 817 1773 -734 641 288 123 48 chr9 12057600 12058107 -130213337 - L2 LINE L2 -98 3215 2648 3205 43 0 0 chr9 12058107 12058502 -130212942 + L1PA4 LINE L1 5758 6152 -3 641 288 123 48 chr9 12058502 12058538 -130212906 - L2 LINE L2 -665 2648 2616 1404 153 16 28 chr9 12059000 12059249 -130212195 - L1PB3 LINE L1 0 6154 5909 219 220 138 88 chr9 12060080 12060239 -130211205 - L2 LINE L2 -37 3276 3110 23 0 0 0 chr9 12060356 12060379 -130211065 + AT_rich Low_complexity Low_complexity 1 23 0 1913 262 82 39 chr9 12060653 12062097 -130209347 + L1ME LINE L1 10 1505 -4575 327 286 165 9 chr9 12062097 12062321 -130209123 + L1ME LINE L1 3522 3780 -2300 2202 258 69 46 chr9 12062321 12063702 -130207742 + L1ME LINE L1 4199 5600 -500 28 29 0 0 chr9 12066707 12066742 -130204702 + AT_rich Low_complexity Low_complexity 1 35 0 269 235 12 0 chr9 12067029 12067114 -130204330 + (CATA)n Simple_repeat Simple_repeat 3 88 0 332 278 111 12 chr9 12068960 12069091 -130202353 + MIR SINE MIR 11 151 -57 5555 117 8 0 chr9 12069093 12069922 -130201522 + L1PA13 LINE L1 5308 6143 -20 29 47 0 0 chr9 12069965 12070008 -130201436 + AT_rich Low_complexity Low_complexity 1 43 0 183 42 0 0 chr9 12070262 12070286 -130201158 + (CA)n Simple_repeat Simple_repeat 1 24 0 395 243 98 75 chr9 12070853 12071026 -130200418 + MER5B DNA MER1_type 2 178 0 262 257 14 0 chr9 12071134 12071208 -130200236 + (CA)n Simple_repeat Simple_repeat 1 75 0 2559 39 0 7 chr9 12071272 12071580 -130199864 + AluY SINE Alu 1 306 -5 200 286 57 29 chr9 12071776 12071846 -130199598 + MIR SINE MIR 82 153 -55 1627 147 55 68 chr9 12072325 12072705 -130198739 - THE1C LTR MaLR 0 375 1 9425 126 63 6 chr9 12072705 12074200 -130197244 - THE1C-int LTR MaLR 0 1580 1 1505 167 66 74 chr9 12074200 12074578 -130196866 - THE1C LTR MaLR 0 375 1 26 0 0 0 chr9 12074700 12074726 -130196718 + AT_rich Low_complexity Low_complexity 1 26 0 34 42 0 0 chr9 12075030 12075078 -130196366 + AT_rich Low_complexity Low_complexity 1 48 0 261 297 66 0 chr9 12075188 12075279 -130196165 - MIR SINE MIR -62 200 104 22 0 0 0 chr9 12076427 12076449 -130194995 + AT_rich Low_complexity Low_complexity 1 22 0 673 295 71 5 chr9 12076742 12076966 -130194478 + MIR SINE MIR 13 251 -11 416 226 81 24 chr9 12077093 12077217 -130194227 + L2 LINE L2 3183 3313 0 191 311 170 7 chr9 12077538 12077673 -130193771 - MIR SINE MIR -11 251 95 2116 160 38 30 chr9 12077688 12078237 -130193207 - MLT2A2 LTR ERVL 0 554 1 214 304 14 29 chr9 12078683 12078752 -130192692 - L2 LINE L2 -1 3312 3245 1117 221 0 32 chr9 12079403 12079656 -130191788 + L1MC3 LINE L1 6548 6792 -993 241 292 135 22 chr9 12079690 12079779 -130191665 + MIR SINE MIR 32 130 -78 2041 101 6 38 chr9 12080449 12080767 -130190677 - AluSp SINE Alu -1 312 5 2101 104 3 27 chr9 12080874 12081172 -130190272 + AluSg SINE Alu 1 291 -19 25 0 0 0 chr9 12081199 12081224 -130190220 + AT_rich Low_complexity Low_complexity 1 25 0 2112 114 3 0 chr9 12081472 12081762 -130189682 - AluSq SINE Alu -20 293 3 180 97 0 0 chr9 12081774 12081805 -130189639 + (T)n Simple_repeat Simple_repeat 1 31 0 1724 140 0 23 chr9 12081805 12082070 -130189374 - AluSx SINE Alu -53 259 1 2175 131 33 6 chr9 12082070 12082405 -130189039 - MER41A LTR ERV1 -210 344 1 23 33 0 0 chr9 12083099 12083129 -130188315 + AT_rich Low_complexity Low_complexity 1 30 0 268 217 11 65 chr9 12083134 12083226 -130188218 - L2 LINE L2 -994 2320 2234 502 224 8 75 chr9 12083306 12083329 -130188115 - FLAM_A SINE Alu -177 125 102 1999 122 37 0 chr9 12083329 12083623 -130187821 + AluSp SINE Alu 1 305 -8 502 224 8 75 chr9 12083623 12083733 -130187711 - FLAM_A SINE Alu -200 102 1 1790 127 32 49 chr9 12083890 12084198 -130187246 - AluSx SINE Alu -9 303 1 367 233 134 35 chr9 12084235 12084407 -130187037 - L1MC5 LINE L1 -61 7900 7712 2224 121 0 3 chr9 12084516 12084829 -130186615 - AluSx SINE Alu 0 312 1 21 0 0 0 chr9 12085005 12085026 -130186418 + AT_rich Low_complexity Low_complexity 1 21 0 2035 143 0 3 chr9 12085186 12085493 -130185951 + AluSx SINE Alu 1 306 -6 2228 88 0 0 chr9 12085663 12085985 -130185459 - AluY SINE Alu 0 322 1 33 0 0 0 chr9 12085992 12086025 -130185419 + AT_rich Low_complexity Low_complexity 1 33 0 1216 140 4 1 chr9 12086338 12087913 -130183531 - ALR/Alpha Satellite centromeric 0 1579 1 4338 93 17 4 chr9 12087916 12088927 -130182517 - MER11A LTR ERVK -5 1261 1 1288 134 3 1 chr9 12088907 12094067 -130177377 - ALR/Alpha Satellite centromeric -55 5169 1 * 1220 140 2 4 chr9 12094167 12095389 -130176055 + ALR/Alpha Satellite centromeric 1 1220 -27 1196 133 3 3 chr9 12095402 12097452 -130173992 + ALR/Alpha Satellite centromeric 1 2049 -4 547 141 0 0 chr9 12097452 12097537 -130173907 + AluS SINE Alu 220 304 -8 1300 126 5 3 chr9 12097544 12102597 -130168847 + ALR/Alpha Satellite centromeric 1 5064 0 490 226 0 0 chr9 12103434 12103551 -130167893 - L1MC4 LINE L1 0 8042 7901 1870 110 50 0 chr9 12103614 12103895 -130167549 - AluSx SINE Alu -16 296 2 576 227 148 75 chr9 12103895 12104141 -130167303 - L1MC4 LINE L1 -995 6813 6586 2012 124 10 7 chr9 12104141 12104439 -130167005 - AluSx SINE Alu -13 299 1 576 227 148 75 chr9 12104439 12104861 -130166583 - L1MC4 LINE L1 -1222 6586 6116 * 1004 147 28 6 chr9 12104854 12105031 -130166413 - L1PA16 LINE L1 -34 6132 5952 625 187 89 31 chr9 12105056 12105251 -130166193 - MER33 DNA MER1_type -255 69 1 192 163 0 0 chr9 12105633 12105676 -130165768 + (CA)n Simple_repeat Simple_repeat 2 44 0 1126 205 20 12 chr9 12106454 12106708 -130164736 + Tigger1 DNA MER2_type 2163 2418 0 235 322 11 11 chr9 12108508 12108595 -130162849 + L2 LINE L2 3227 3313 0 2466 49 16 7 chr9 12108792 12109098 -130162346 - AluY SINE Alu -2 309 1 198 103 0 0 chr9 12109485 12109514 -130161930 + (TA)n Simple_repeat Simple_repeat 2 30 0 2027 154 13 34 chr9 12109827 12110209 -130161235 + THE1C LTR MaLR 2 375 0 21 0 0 0 chr9 12111354 12111375 -130160069 + AT_rich Low_complexity Low_complexity 1 21 0 239 316 35 18 chr9 12111535 12111649 -130159795 + MLT1I LTR MaLR 278 393 -16 180 350 80 29 chr9 12112319 12112456 -130158988 + L3 LINE CR1 1425 1568 -9 23 54 0 0 chr9 12112558 12112595 -130158849 + AT_rich Low_complexity Low_complexity 1 37 0 1153 147 10 5 chr9 12112667 12112864 -130158580 + L1PBa LINE L1 3 200 -6663 11404 125 87 72 chr9 12112866 12114188 -130157256 + L1PBa LINE L1 636 1937 -4925 1060 78 0 14 chr9 12114188 12114329 -130157115 - AluY SINE Alu -15 296 158 11404 125 87 72 chr9 12114329 12114703 -130156741 + L1PBa LINE L1 1937 2304 -4558 2386 75 3 7 chr9 12114703 12115010 -130156434 + AluY SINE Alu 2 307 -4 11404 125 87 72 chr9 12115010 12115939 -130155505 + L1PBa LINE L1 2304 3444 -3418 2321 187 106 0 chr9 12115941 12116395 -130155049 + L1PB3 LINE L1 5593 6094 -60 394 32 0 81 chr9 12116405 12116467 -130154977 - L1PA3 LINE L1 0 6155 6099 1957 21 0 0 chr9 12116469 12116705 -130154739 + L1P LINE L1 4987 5222 -924 366 67 0 50 chr9 12116705 12116760 -130154684 + L1PB1 LINE L1 6091 6147 -4 2143 95 60 0 chr9 12117342 12117627 -130153817 - AluSq SINE Alu -11 302 1 1057 244 117 22 chr9 12118637 12118810 -130152634 - L1M4 LINE L1 -1316 4830 4675 2466 129 3 3 chr9 12118810 12119174 -130152270 - THE1B LTR MaLR 0 364 1 1057 244 117 22 chr9 12119174 12119435 -130152009 - L1M4 LINE L1 -1471 4675 4339 11821 35 9 3 chr9 12119435 12121650 -130149794 - L1PA4 LINE L1 -3 6152 3928 1057 244 117 22 chr9 12121650 12121717 -130149727 - L1M4 LINE L1 -1807 4339 4280 201 155 52 0 chr9 12121757 12121815 -130149629 + (TTAA)n Simple_repeat Simple_repeat 4 64 0 273 58 58 0 chr9 12121828 12121880 -130149564 + (TTAA)n Simple_repeat Simple_repeat 3 57 0 424 223 33 25 chr9 12121926 12122047 -130149397 - L1M4 LINE L1 -1922 4224 4103 6028 165 28 5 chr9 12122913 12124343 -130147101 - L1MA3 LINE L1 0 6305 4843 1725 165 51 38 chr9 12124343 12124713 -130146731 - THE1C LTR MaLR 0 375 1 5877 161 24 19 chr9 12124713 12125739 -130145705 - THE1C-int LTR MaLR 0 1580 549 518 269 88 46 chr9 12126740 12127023 -130144421 - L1ME1 LINE L1 -44 6122 5828 461 296 0 0 chr9 12127047 12127199 -130144245 + L1M4 LINE L1 3605 3756 -2390 280 269 113 6 chr9 12127231 12127307 -130144137 + L1M4 LINE L1 3742 3809 -2337 7075 34 2 0 chr9 12127307 12128153 -130143291 + L1PA4 LINE L1 5304 6151 -4 280 269 113 6 chr9 12128153 12128236 -130143208 + L1M4 LINE L1 3809 3918 -2228 366 333 123 4 chr9 12128238 12128481 -130142963 + HAL1 LINE L1 1298 1569 -938 829 298 39 12 chr9 12128706 12129038 -130142406 + HAL1 LINE L1 1550 1890 -617 29 47 0 0 chr9 12129456 12129499 -130141945 + AT_rich Low_complexity Low_complexity 1 43 0 254 326 7 20 chr9 12129858 12130005 -130141439 + CT-rich Low_complexity Low_complexity 3 147 0 2250 89 86 0 chr9 12131060 12131385 -130140059 + THE1A LTR MaLR 3 355 0 11339 105 1 7 chr9 12131385 12132974 -130138470 + THE1A-int LTR MaLR 1 1580 0 2153 107 71 21 chr9 12132976 12133312 -130138132 + THE1A LTR MaLR 3 355 0 22 0 0 0 chr9 12133580 12133602 -130137842 + AT_rich Low_complexity Low_complexity 1 22 0 297 0 0 0 chr9 12133625 12133658 -130137786 + (TG)n Simple_repeat Simple_repeat 2 34 0 189 377 61 0 chr9 12134703 12134817 -130136627 + MIR SINE MIR 20 140 -122 191 167 24 0 chr9 12134861 12134903 -130136541 + (CATA)n Simple_repeat Simple_repeat 3 45 0 237 258 0 0 chr9 12135069 12135099 -130136345 + (CA)n Simple_repeat Simple_repeat 1 30 -36 2225 103 0 0 chr9 12135099 12135381 -130136063 + AluSc SINE Alu 3 284 -25 237 258 0 0 chr9 12135381 12135416 -130136028 + (CA)n Simple_repeat Simple_repeat 29 66 0 23 0 0 0 chr9 12135836 12135859 -130135585 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr9 12136871 12136900 -130134544 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr9 12136977 12137002 -130134442 + AT_rich Low_complexity Low_complexity 1 25 0 189 107 0 0 chr9 12137399 12137427 -130134017 + (TG)n Simple_repeat Simple_repeat 2 29 0 583 269 184 3 chr9 12137664 12137980 -130133464 - Charlie2 DNA MER1_type -19 2843 2471 272 352 0 11 chr9 12138599 12138687 -130132757 + L2 LINE L2 3137 3223 -49 2034 127 3 7 chr9 12138735 12139027 -130132417 + AluSx SINE Alu 9 299 -13 222 139 23 0 chr9 12139760 12139803 -130131641 + (TG)n Simple_repeat Simple_repeat 2 45 0 1251 295 102 27 chr9 12140957 12141739 -130129705 + L2 LINE L2 2467 3304 -9 360 292 56 21 chr9 12141770 12141914 -130129530 - MIR3 SINE MIR -6 202 54 707 296 89 44 chr9 12142295 12142701 -130128743 + L3b LINE CR1 1106 1529 -54 1256 194 131 45 chr9 12143342 12143678 -130127766 - MLT1A1 LTR MaLR 0 365 1 453 355 77 11 chr9 12144388 12144571 -130126873 + MER91A DNA MER1_type 2 196 0 228 248 59 59 chr9 12144585 12144686 -130126758 - HAL1 LINE L1 -14 2493 2393 799 177 96 90 chr9 12144726 12144875 -130126569 - L1MA9 LINE L1 0 6312 6178 365 39 20 0 chr9 12144875 12144926 -130126518 + (TG)n Simple_repeat Simple_repeat 1 52 0 799 177 96 90 chr9 12144926 12145084 -130126360 - L1MA9 LINE L1 -134 6178 6022 322 277 28 14 chr9 12145088 12145229 -130126215 - HAL1 LINE L1 -128 2379 2237 3204 120 16 0 chr9 12145428 12145943 -130125501 - L1MA3 LINE L1 0 6305 5783 11596 181 59 25 chr9 12145945 12147806 -130123638 - L1 LINE L1 -1080 6485 4472 2079 139 0 0 chr9 12147806 12148115 -130123329 - AluSx SINE Alu 0 312 4 11596 181 59 25 chr9 12148115 12149295 -130122149 - L1 LINE L1 -3093 4472 3334 18943 158 35 12 chr9 12151460 12151935 -130119509 - L1 LINE L1 -4219 3346 2883 3438 128 6 4 chr9 12151935 12152445 -130118999 - MER9 LTR ERVK 0 511 1 18943 158 35 12 chr9 12152445 12152795 -130118649 - L1 LINE L1 -4682 2883 2542 2089 137 6 6 chr9 12152795 12153108 -130118336 - AluSq SINE Alu 0 313 1 18943 158 35 12 chr9 12153108 12155542 -130115902 - L1 LINE L1 -5023 2542 12 538 339 13 48 chr9 12155549 12156009 -130115435 - HAL1 LINE L1 -423 2084 1641 440 333 86 17 chr9 12156027 12156261 -130115183 - MIR SINE MIR -9 253 4 237 238 152 19 chr9 12156354 12156564 -130114880 - HAL1 LINE L1 -1241 1266 1029 439 343 131 7 chr9 12156600 12156897 -130114547 - HAL1 LINE L1 -1735 772 439 404 251 118 93 chr9 12156905 12157113 -130114331 - HAL1 LINE L1 -2134 373 153 2269 107 7 0 chr9 12157113 12157421 -130114023 - AluSx SINE Alu -2 310 1 404 251 118 93 chr9 12157421 12157535 -130113909 - HAL1 LINE L1 -2354 153 43 24 0 0 0 chr9 12159315 12159339 -130112105 + AT_rich Low_complexity Low_complexity 1 24 0 267 279 205 31 chr9 12159623 12159784 -130111660 - MER5A DNA MER1_type 0 189 1 629 290 45 77 chr9 12159818 12160170 -130111274 - LTR16C LTR ERVL 0 491 151 23 0 0 0 chr9 12160373 12160396 -130111048 + AT_rich Low_complexity Low_complexity 1 23 0 369 93 0 0 chr9 12161419 12161473 -130109971 + (CA)n Simple_repeat Simple_repeat 2 55 0 272 275 62 12 chr9 12162011 12162091 -130109353 + MIR SINE MIR 173 256 -6 615 295 120 0 chr9 12162195 12162429 -130109015 - MIR SINE MIR 0 262 1 225 0 0 0 chr9 12163068 12163093 -130108351 + (CA)n Simple_repeat Simple_repeat 2 26 0 288 256 13 0 chr9 12164043 12164121 -130107323 + MER116 DNA Mariner 2 80 0 21 0 0 0 chr9 12164432 12164453 -130106991 + AT_rich Low_complexity Low_complexity 1 21 0 1822 163 79 30 chr9 12164605 12165011 -130106433 - MSTB LTR MaLR 0 426 1 8572 185 33 4 chr9 12165019 12166622 -130104822 - MSTB-int LTR MaLR -1 1650 1 2096 195 19 16 chr9 12166622 12167047 -130104397 - MSTB LTR MaLR 0 426 1 11203 41 0 0 chr9 12167409 12168776 -130102668 + L1P LINE L1 3808 5174 -972 3324 261 52 32 chr9 12168776 12170157 -130101287 - L1MEc LINE L1 -2185 4030 2622 1167 259 21 16 chr9 12170273 12170697 -130100747 - L1MEc LINE L1 -3534 2681 2256 394 319 44 54 chr9 12170713 12171030 -130100414 - L1MEc LINE L1 -4352 2044 1731 303 309 21 42 chr9 12171168 12171359 -130100085 - L1MEc LINE L1 -4595 1801 1615 * 2737 195 75 37 chr9 12171340 12172077 -130099367 - L1MD1 LINE L1 0 6242 5478 23 54 0 0 chr9 12172368 12172405 -130099039 + AT_rich Low_complexity Low_complexity 1 37 0 2119 110 17 0 chr9 12172633 12172933 -130098511 - AluSc SINE Alu -4 305 1 24 0 0 0 chr9 12173107 12173131 -130098313 + AT_rich Low_complexity Low_complexity 1 24 0 813 241 174 15 chr9 12174169 12174434 -130097010 - MLT1A1 LTR MaLR -3 362 56 5248 149 15 52 chr9 12174478 12175878 -130095566 - L1PA16 LINE L1 0 6166 4795 186 71 0 0 chr9 12176908 12176936 -130094508 + (A)n Simple_repeat Simple_repeat 1 28 0 1352 150 48 0 chr9 12176985 12177212 -130094232 + MER41B LTR ERV1 1 238 -397 2689 98 93 5 chr9 12177212 12177619 -130093825 + LTR7 LTR ERV1 1 443 -7 2252 156 5 24 chr9 12177626 12178036 -130093408 + MER41B LTR ERV1 234 635 0 295 100 0 20 chr9 12178947 12179019 -130092425 - AluSc SINE Alu 0 299 247 1886 139 45 27 chr9 12179041 12179372 -130092072 + MER1B DNA MER1_type 1 337 0 23 54 0 0 chr9 12179662 12179699 -130091745 + AT_rich Low_complexity Low_complexity 1 37 0 302 295 72 97 chr9 12179822 12180026 -130091418 - MLT1K LTR MaLR -110 478 281 309 26 0 0 chr9 12180026 12180064 -130091380 + (CA)n Simple_repeat Simple_repeat 2 39 0 302 295 72 97 chr9 12180064 12180137 -130091307 - MLT1K LTR MaLR -307 281 208 210 457 16 0 chr9 12180375 12180502 -130090942 + L2 LINE L2 2896 3024 -248 656 153 0 8 chr9 12180560 12180678 -130090766 - L1MC/D LINE L1 -759 5574 5458 280 325 67 25 chr9 12180685 12180805 -130090639 + L2 LINE L2 3148 3272 0 26 0 0 0 chr9 12182624 12182650 -130088794 + AT_rich Low_complexity Low_complexity 1 26 0 188 279 101 13 chr9 12184481 12184560 -130086884 + MIR SINE MIR 81 166 -96 2208 112 0 3 chr9 12184918 12185221 -130086223 + AluSg SINE Alu 1 302 -8 612 256 81 78 chr9 12185533 12185853 -130085591 + L2 LINE L2 1372 1692 -1622 339 328 22 0 chr9 12185848 12185982 -130085462 + L2 LINE L2 1831 1967 -1347 * 470 253 121 20 chr9 12185982 12186180 -130085264 - L1MA10 LINE L1 0 6334 6117 842 308 91 42 chr9 12186235 12186915 -130084529 + L2 LINE L2 1958 2762 -552 645 259 101 28 chr9 12186917 12187354 -130084090 + Charlie2 DNA MER1_type 2394 2862 0 187 333 98 8 chr9 12188013 12188136 -130083308 - L2 LINE L2 -213 3059 2926 286 222 141 0 chr9 12188374 12188473 -130082971 - L1MD3 LINE L1 -23 7972 7860 502 226 102 0 chr9 12188574 12188711 -130082733 - L1MD3 LINE L1 -110 7885 7735 333 314 101 13 chr9 12189836 12189995 -130081449 - MLT1K LTR MaLR -80 508 336 314 356 16 31 chr9 12190017 12190211 -130081233 - L1MEc LINE L1 -6096 300 110 37 23 0 0 chr9 12191113 12191157 -130080287 + AT_rich Low_complexity Low_complexity 1 44 0 2692 183 14 45 chr9 12191822 12191860 -130079584 + MER34 LTR ERV1 1 39 -503 2453 138 44 7 chr9 12191860 12192273 -130079171 - MSTA LTR MaLR 0 428 1 2692 183 14 45 chr9 12192273 12192793 -130078651 + MER34 LTR ERV1 39 542 0 306 280 65 0 chr9 12192851 12192958 -130078486 + MIR SINE MIR 73 186 -76 251 54 27 0 chr9 12192965 12193002 -130078442 + (TC)n Simple_repeat Simple_repeat 1 38 0 2018 128 66 9 chr9 12193228 12193563 -130077881 + THE1A LTR MaLR 1 354 -1 10768 113 8 14 chr9 12193564 12195154 -130076290 + THE1A-int LTR MaLR 1 1580 0 2304 113 8 11 chr9 12195156 12195510 -130075934 + THE1A LTR MaLR 3 355 0 297 221 44 44 chr9 12195765 12195860 -130075584 - MER34 LTR ERV1 -419 123 29 822 150 36 7 chr9 12195860 12196000 -130075444 + MSTA LTR MaLR 1 144 -284 23 78 0 0 chr9 12196871 12196922 -130074522 + AT_rich Low_complexity Low_complexity 1 51 0 1942 229 61 28 chr9 12197566 12198170 -130073274 + MER92B LTR ERV1 1 624 -12 32 76 0 11 chr9 12198247 12198281 -130073163 + AT_rich Low_complexity Low_complexity 1 34 -57 2058 134 3 0 chr9 12198281 12198571 -130072873 - AluSx SINE Alu -21 291 1 32 76 0 11 chr9 12198571 12198628 -130072816 + AT_rich Low_complexity Low_complexity 34 91 0 24 67 0 0 chr9 12198691 12198736 -130072708 + AT_rich Low_complexity Low_complexity 1 45 0 33 0 0 0 chr9 12198914 12198947 -130072497 + AT_rich Low_complexity Low_complexity 1 33 0 338 286 121 29 chr9 12199233 12199439 -130072005 - L1M4 LINE L1 -2326 3820 3596 24 0 0 0 chr9 12199551 12199575 -130071869 + AT_rich Low_complexity Low_complexity 1 24 0 268 273 22 22 chr9 12200033 12200172 -130071272 - L1M4 LINE L1 -3155 2991 2853 22 0 0 0 chr9 12200176 12200198 -130071246 + AT_rich Low_complexity Low_complexity 1 22 0 219 200 20 0 chr9 12200835 12200885 -130070559 + (TA)n Simple_repeat Simple_repeat 1 51 0 853 175 148 27 chr9 12201480 12201703 -130069741 - LTR48 LTR ERV1 -537 250 1 1339 230 69 19 chr9 12201872 12202294 -130069150 - L1ME1 LINE L1 -5 6161 5719 1275 259 86 23 chr9 12202268 12202592 -130068852 - L1ME1 LINE L1 -1131 5015 4713 * 1879 187 25 129 chr9 12202592 12203143 -130068301 + LTR9 LTR ERV1 1 469 -143 1481 133 130 11 chr9 12203143 12203437 -130068007 - AluSx SINE Alu 0 312 2 1879 187 25 129 chr9 12203437 12203568 -130067876 + LTR9 LTR ERV1 469 612 0 1275 259 86 23 chr9 12203568 12203849 -130067595 - L1ME1 LINE L1 -1433 4713 4372 218 177 0 48 chr9 12203957 12204019 -130067425 + CT-rich Low_complexity Low_complexity 2 60 0 23 33 0 0 chr9 12205040 12205070 -130066374 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr9 12206972 12206996 -130064448 + AT_rich Low_complexity Low_complexity 1 24 0 230 252 92 25 chr9 12207800 12207919 -130063525 - MLT1L LTR MaLR -8 607 481 1720 173 3 0 chr9 12208016 12208300 -130063144 - AluSx SINE Alu -27 285 1 31 26 0 0 chr9 12210704 12210742 -130060702 + AT_rich Low_complexity Low_complexity 1 38 0 2385 77 3 0 chr9 12210936 12211246 -130060198 - AluY SINE Alu 0 311 1 207 0 0 0 chr9 12212547 12212570 -130058874 + (TTG)n Simple_repeat Simple_repeat 2 24 0 7369 197 46 12 chr9 12212594 12215800 -130055644 - L1MA4 LINE L1 -14 7705 22 2289 107 24 0 chr9 12216501 12216838 -130054606 + L1PA10 LINE L1 5823 6167 -1 293 294 0 0 chr9 12217011 12217096 -130054348 + T-rich Low_complexity Low_complexity 1 85 0 290 151 0 0 chr9 12217132 12217185 -130054259 + MER41A LTR ERV1 402 454 -100 21 36 0 0 chr9 12217305 12217333 -130054111 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr9 12217698 12217721 -130053723 + AT_rich Low_complexity Low_complexity 1 23 0 2078 123 0 0 chr9 12218325 12218629 -130052815 - AluSq SINE Alu 0 305 2 2189 64 0 0 chr9 12218693 12218960 -130052484 + AluY SINE Alu 1 267 -44 30 0 0 0 chr9 12219070 12219100 -130052344 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr9 12219154 12219182 -130052262 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr9 12219410 12219435 -130052009 + AT_rich Low_complexity Low_complexity 1 25 0 225 313 0 10 chr9 12219473 12219572 -130051872 + (TTAA)n Simple_repeat Simple_repeat 1 98 0 26 30 0 0 chr9 12219768 12219801 -130051643 + AT_rich Low_complexity Low_complexity 1 33 0 1117 246 141 17 chr9 12220293 12220712 -130050732 + MLT1D LTR MaLR 1 471 -34 1911 203 44 7 chr9 12220815 12221224 -130050220 - MSTB LTR MaLR -2 424 1 223 218 18 0 chr9 12221401 12221456 -130049988 + (TA)n Simple_repeat Simple_repeat 2 57 0 613 158 82 54 chr9 12222767 12222951 -130048493 - MER53 DNA DNA 0 189 1 1022 205 9 14 chr9 12223212 12223427 -130048017 + AluJo SINE Alu 87 300 -12 677 45 11 0 chr9 12223427 12223516 -130047928 + (GGAA)n Simple_repeat Simple_repeat 3 92 0 2516 113 16 3 chr9 12224796 12225166 -130046278 - THE1C LTR MaLR 0 375 1 270 132 0 0 chr9 12226024 12226077 -130045367 + (CA)n Simple_repeat Simple_repeat 2 54 0 312 285 165 19 chr9 12228084 12228242 -130043202 + MIR SINE MIR 26 206 -56 567 328 134 8 chr9 12228769 12229150 -130042294 - MLT1J2 LTR MaLR -19 431 3 1695 104 39 0 chr9 12229242 12229473 -130041971 - AluSx SINE Alu -72 240 1 2504 68 0 0 chr9 12229667 12229975 -130041469 - AluY SINE Alu -3 308 1 210 296 0 0 chr9 12230225 12230279 -130041165 + (CA)n Simple_repeat Simple_repeat 2 55 0 782 236 6 0 chr9 12230296 12230457 -130040987 + FAM SINE Alu 1 162 -13 26 30 0 0 chr9 12230464 12230497 -130040947 + AT_rich Low_complexity Low_complexity 1 33 0 275 202 48 29 chr9 12230729 12230833 -130040611 + (TAGA)n Simple_repeat Simple_repeat 4 109 0 236 366 30 8 chr9 12231997 12232131 -130039313 + L2 LINE L2 2215 2351 -963 252 374 9 61 chr9 12232528 12232742 -130038702 + L2 LINE L2 2857 3059 -213 266 273 15 15 chr9 12232883 12232949 -130038495 + L2 LINE L2 3201 3266 -6 246 81 0 0 chr9 12233034 12233071 -130038373 + (TA)n Simple_repeat Simple_repeat 2 38 0 237 363 73 22 chr9 12233140 12233457 -130037987 + L2 LINE L2 1752 2084 -1230 253 289 197 73 chr9 12234628 12234846 -130036598 - MIR SINE MIR -12 250 6 1627 166 86 12 chr9 12236276 12236614 -130034830 - MER47A DNA MER2_type -2 364 2 1198 234 70 56 chr9 12236801 12237316 -130034128 + MER39 LTR ERV1 4 707 0 2122 244 76 37 chr9 12237454 12238102 -130033342 + LTR48 LTR ERV1 1 674 -113 1850 170 55 32 chr9 12238102 12238203 -130033241 - MER61C LTR ERV1 0 434 337 1898 121 0 7 chr9 12238203 12238504 -130032940 - AluSc SINE Alu 0 299 1 1850 170 55 32 chr9 12238504 12238841 -130032603 - MER61C LTR ERV1 -97 337 1 441 142 50 5 chr9 12238843 12238950 -130032494 + MER39 LTR ERV1 447 703 -4 320 274 12 12 chr9 12238953 12239037 -130032407 + MER58B DNA MER1_type 240 323 -18 1549 208 0 13 chr9 12239369 12239672 -130031772 + AluJb SINE Alu 1 299 -13 256 175 0 0 chr9 12239935 12239975 -130031469 - LTR7 LTR ERV1 0 450 411 429 191 35 9 chr9 12239975 12240090 -130031354 - HERVH LTR ERV1 -7595 118 1 1274 170 150 42 chr9 12240090 12240496 -130030948 - LTR7 LTR ERV1 0 450 1 324 205 36 36 chr9 12240758 12240841 -130030603 + LTR48-int LTR ERV1 1537 1619 -4712 424 100 0 0 chr9 12240841 12240901 -130030543 + Alu SINE Alu 1 60 -250 6322 208 57 57 chr9 12240901 12241905 -130029539 + LTR48-int LTR ERV1 1671 2721 -3610 235 182 0 0 chr9 12241905 12241949 -130029495 - MER54B LTR ERVL -4 789 746 6322 208 57 57 chr9 12241949 12242597 -130028847 + LTR48-int LTR ERV1 2721 3367 -2964 1085 175 53 77 chr9 12242632 12242969 -130028475 + LTR48-int LTR ERV1 3352 3680 -2651 717 180 0 16 chr9 12242985 12243113 -130028331 - FLAM_C SINE Alu -7 126 1 2152 172 41 111 chr9 12243200 12243564 -130027880 + LTR48-int LTR ERV1 3712 3999 -2332 2007 126 0 3 chr9 12243564 12243850 -130027594 - AluSx SINE Alu -27 285 1 2152 172 41 111 chr9 12243850 12244222 -130027222 + LTR48-int LTR ERV1 3999 4396 -1935 558 267 69 69 chr9 12244222 12244484 -130026960 + LTR48-int LTR ERV1 4510 4771 -1560 1375 149 3 57 chr9 12244493 12244775 -130026669 - LTR23 LTR ERV1 -10 427 161 19542 180 28 12 chr9 12244825 12248083 -130023361 + L1M1 LINE L1 16 3220 -4345 1204 109 47 0 chr9 12248083 12248275 -130023169 + L1PA13 LINE L1 5959 6159 -4 19542 180 28 12 chr9 12248275 12248414 -130023030 + L1M1 LINE L1 3220 3355 -4210 614 48 0 12 chr9 12248414 12248497 -130022947 + (GGAA)n Simple_repeat Simple_repeat 4 85 0 19542 180 28 12 chr9 12248497 12249618 -130021826 + L1M1 LINE L1 3355 4622 -2943 1957 152 3 0 chr9 12249618 12249915 -130021529 - AluSx SINE Alu -14 298 1 19542 180 28 12 chr9 12249915 12250281 -130021163 + L1M1 LINE L1 4622 4981 -2584 995 188 45 0 chr9 12250281 12250457 -130020987 - AluSg/x SINE Alu -22 290 107 389 206 246 0 chr9 12250461 12250587 -130020857 + L1M1 LINE L1 4986 5142 -2423 * 6545 116 19 11 chr9 12250564 12251610 -130019834 + L1MA1 LINE L1 6671 7721 0 555 190 70 28 chr9 12251673 12251815 -130019629 - LTR23 LTR ERV1 -287 150 3 5483 148 26 16 chr9 12251815 12252271 -130019173 + LTR48-int LTR ERV1 4771 5221 -1110 2045 188 30 5 chr9 12252271 12252664 -130018780 - MER57A LTR ERV1 0 403 1 5483 148 26 16 chr9 12252664 12253217 -130018227 + LTR48-int LTR ERV1 5221 5790 -541 469 259 22 87 chr9 12253213 12253398 -130018046 + LTR48-int LTR ERV1 4541 4713 -223 * 717 254 110 19 chr9 12253568 12253777 -130017667 + LTR48 LTR ERV1 1 228 -559 3847 168 45 4 chr9 12253792 12254475 -130016969 + MER50 LTR ERV1 1 711 -23 2110 213 54 10 chr9 12254476 12255104 -130016340 - L1MC/D LINE L1 -575 5769 5114 1777 156 104 42 chr9 12255581 12255793 -130015651 - MSTA LTR MaLR 0 428 231 2132 102 0 3 chr9 12255793 12256115 -130015329 - AluSg SINE Alu 0 321 1 1777 156 104 42 chr9 12256115 12256304 -130015140 - MSTA LTR MaLR -197 231 1 2606 249 20 23 chr9 12257706 12258591 -130012853 - L1MC/D LINE L1 -1031 5115 4233 3073 92 5 0 chr9 12258591 12259016 -130012428 - L1PA6 LINE L1 0 6154 5728 2265 117 0 67 chr9 12259042 12259110 -130012334 - THE1B LTR MaLR -4 360 289 2762 74 22 0 chr9 12259110 12259477 -130011967 + L1PA8 LINE L1 5794 6168 -4 2265 117 0 67 chr9 12259477 12259794 -130011650 - THE1B LTR MaLR -75 289 1 9625 113 48 37 chr9 12259794 12261357 -130010087 - THE1B-int LTR MaLR 0 1580 1 2627 116 6 0 chr9 12261357 12261719 -130009725 - THE1B LTR MaLR 0 364 1 676 212 66 0 chr9 12261719 12261870 -130009574 - L1MC/D LINE L1 -1935 4211 4051 1523 235 166 34 chr9 12262519 12263072 -130008372 - MLT1E2 LTR MaLR 0 626 1 22 0 0 0 chr9 12263421 12263443 -130008001 + AT_rich Low_complexity Low_complexity 1 22 0 968 235 15 0 chr9 12264951 12265155 -130006289 - MER58A DNA MER1_type -9 215 9 21 0 0 0 chr9 12265884 12265905 -130005539 + AT_rich Low_complexity Low_complexity 1 21 0 284 330 11 0 chr9 12267505 12267596 -130003848 - MIR SINE MIR 0 262 171 207 0 0 0 chr9 12268457 12268480 -130002964 + (T)n Simple_repeat Simple_repeat 1 23 0 207 0 0 0 chr9 12269465 12269488 -130001956 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 4238 179 55 30 chr9 12270098 12270378 -130001066 - Charlie5 DNA MER1_type -13 2611 2339 2164 147 108 5 chr9 12270378 12270766 -130000678 + MSTA LTR MaLR 1 428 0 4238 179 55 30 chr9 12270766 12270885 -130000559 - Charlie5 DNA MER1_type -285 2339 2224 2241 78 7 20 chr9 12270885 12271191 -130000253 + AluSp SINE Alu 1 302 -11 4238 179 55 30 chr9 12271191 12271879 -129999565 - Charlie5 DNA MER1_type -400 2224 1496 2987 241 61 10 chr9 12271914 12272879 -129998565 - Charlie5 DNA MER1_type -2488 124 1 22 35 0 0 chr9 12272983 12273012 -129998432 + AT_rich Low_complexity Low_complexity 1 29 0 35 0 0 0 chr9 12273194 12273229 -129998215 + AT_rich Low_complexity Low_complexity 1 35 0 3086 155 24 7 chr9 12273690 12274227 -129997217 + LTR38 LTR ERV1 11 556 0 21 0 0 0 chr9 12274609 12274630 -129996814 + AT_rich Low_complexity Low_complexity 1 21 0 213 240 0 0 chr9 12274698 12274773 -129996671 + (TG)n Simple_repeat Simple_repeat 2 76 0 190 421 40 16 chr9 12275138 12275264 -129996180 - L2 LINE L2 -2 3270 3142 1050 255 102 6 chr9 12275370 12275723 -129995721 + MLT1B LTR MaLR 1 387 -3 33 56 0 0 chr9 12276784 12276838 -129994606 + AT_rich Low_complexity Low_complexity 1 54 0 23 0 0 0 chr9 12276944 12276967 -129994477 + AT_rich Low_complexity Low_complexity 1 23 0 2027 163 12 58 chr9 12277482 12277911 -129993533 - L1MA7 LINE L1 0 6291 5883 762 211 69 6 chr9 12278860 12279035 -129992409 + L1MB3 LINE L1 5997 6182 -1 244 269 0 0 chr9 12279617 12279669 -129991775 + (CA)n Simple_repeat Simple_repeat 2 53 0 1690 166 20 17 chr9 12280443 12280745 -129990699 - AluJb SINE Alu -8 304 2 1056 120 204 0 chr9 12280788 12280979 -129990465 - MER30 DNA MER1_type 0 230 1 198 0 0 0 chr9 12281648 12281670 -129989774 + (A)n Simple_repeat Simple_repeat 1 22 0 570 302 212 38 chr9 12282351 12283110 -129988334 + HAL1 LINE L1 66 956 -1551 668 258 19 43 chr9 12283131 12283550 -129987894 + L1ME1 LINE L1 5599 6068 -98 1230 225 75 28 chr9 12283694 12284014 -129987430 + MLT1B LTR MaLR 1 335 -55 22 56 0 0 chr9 12284115 12284151 -129987293 + AT_rich Low_complexity Low_complexity 1 36 0 1211 156 49 8 chr9 12284400 12284644 -129986800 - Tigger2 DNA MER2_type -10 2708 2455 1163 109 5 5 chr9 12284647 12284831 -129986613 + L1MA1 LINE L1 6118 6301 -1 43 20 0 0 chr9 12284832 12284882 -129986562 + AT_rich Low_complexity Low_complexity 1 50 0 252 345 61 12 chr9 12285120 12285531 -129985913 + L1M4 LINE L1 2268 2698 -3448 655 325 66 12 chr9 12285713 12286045 -129985399 + HERV16 LTR ERVL 851 1200 -3796 301 390 14 14 chr9 12286183 12286406 -129985038 + HERV16 LTR ERVL 1493 1715 -4049 1587 143 14 38 chr9 12286852 12287181 -129984263 + AluSx SINE Alu 1 312 0 240 320 143 7 chr9 12287551 12287698 -129983746 - MIR SINE MIR -60 202 36 2373 57 0 38 chr9 12287795 12288109 -129983335 - AluY SINE Alu -9 302 1 265 353 122 0 chr9 12288704 12288843 -129982601 + MIR3 SINE MIR 39 194 -14 1416 265 131 10 chr9 12289555 12290158 -129981286 - L1ME1 LINE L1 -140 6026 5351 198 108 81 0 chr9 12290234 12290308 -129981136 + (TA)n Simple_repeat Simple_repeat 1 80 0 1646 278 26 7 chr9 12290395 12291013 -129980431 + L1M4 LINE L1 3234 3863 -2283 * 11402 239 31 31 chr9 12291007 12293061 -129978383 - L1P4 LINE L1 -622 6982 4938 216 67 0 0 chr9 12293061 12293091 -129978353 + (TTG)n Simple_repeat Simple_repeat 1 30 0 11402 239 31 31 chr9 12293091 12294751 -129976693 - L1P4 LINE L1 -2666 4938 3280 2186 269 52 19 chr9 12294758 12295490 -129975954 - L1P4 LINE L1 -4654 2927 2172 340 340 0 10 chr9 12295716 12295819 -129975625 - L1P4 LINE L1 -5399 2182 2081 999 310 47 48 chr9 12295963 12296541 -129974903 - L1P4 LINE L1 -6210 1364 788 393 290 95 12 chr9 12296809 12296978 -129974466 - L1ME3A LINE L1 -233 5937 5755 1184 196 25 21 chr9 12297078 12297358 -129974086 - L1MC2 LINE L1 -11 6333 6053 742 175 0 8 chr9 12297358 12297484 -129973960 - Tigger1 DNA MER2_type -9 2409 2285 * 6046 145 19 21 chr9 12297480 12298509 -129972935 - Tigger1 DNA MER2_type -754 1664 638 939 242 68 37 chr9 12298509 12298904 -129972540 + MSTB1 LTR MaLR 1 432 0 4868 264 73 21 chr9 12298913 12300486 -129970958 + MSTB1-int LTR MaLR 28 1620 -31 1637 210 125 70 chr9 12300486 12301175 -129970269 + LTR8A LTR ERV1 1 727 0 4868 264 73 21 chr9 12301175 12301202 -129970242 + MSTB1-int LTR MaLR 1620 1644 -7 256 33 0 0 chr9 12301222 12301252 -129970192 + MSTB2 LTR MaLR 43 72 -385 1418 193 83 70 chr9 12301255 12301758 -129969686 - LTR54 LTR ERV1 0 510 1 1605 237 122 17 chr9 12301759 12302219 -129969225 - HUERS-P3b LTR ERV1 -395 7142 6635 2945 197 70 102 chr9 12302274 12303738 -129967706 - HUERS-P3b LTR ERV1 -791 5094 3475 4196 168 38 3 chr9 12303738 12304494 -129966950 - LTR39 LTR ERV1 0 783 1 2945 197 70 102 chr9 12304494 12304934 -129966510 - HUERS-P3b LTR ERV1 -2410 3475 3022 341 158 0 40 chr9 12304930 12305006 -129966438 - HUERS-P3b LTR ERV1 -2680 3918 3846 * 1048 215 53 40 chr9 12305008 12305544 -129965900 - HUERS-P3b LTR ERV1 -2558 2565 1728 291 239 0 14 chr9 12305553 12305624 -129965820 - HUERS-P3b LTR ERV1 -2575 3371 3302 251 277 0 0 chr9 12305678 12305743 -129965701 - HUERS-P3b LTR ERV1 -3373 4045 3981 2016 198 16 3 chr9 12306216 12306590 -129964854 + MER72 LTR ERV1 9 387 -335 2890 117 2 2 chr9 12306592 12307003 -129964441 - PABL_B LTR ERV1 -2 665 255 466 271 8 0 chr9 12307068 12307190 -129964254 - L1M4 LINE L1 -3577 2569 2447 251 229 59 7 chr9 12308322 12308475 -129962969 + (TA)n Simple_repeat Simple_repeat 2 162 0 616 268 155 0 chr9 12308720 12308914 -129962530 - MER58A DNA MER1_type 0 224 1 231 279 0 15 chr9 12310231 12310299 -129961145 + GA-rich Low_complexity Low_complexity 3 69 0 307 321 230 12 chr9 12311675 12311840 -129959604 + MIR SINE MIR 45 245 -17 694 266 28 83 chr9 12313018 12313623 -129957821 + L1MEc LINE L1 645 1216 -5180 22 70 0 0 chr9 12314019 12314062 -129957382 + AT_rich Low_complexity Low_complexity 1 43 0 242 309 40 13 chr9 12315167 12315319 -129956125 + MER103 DNA DNA 1 156 -10 814 233 50 63 chr9 12315822 12316268 -129955176 - L1ME LINE L1 -623 5612 5178 246 234 0 0 chr9 12316266 12316330 -129955114 - L1ME LINE L1 -3952 2263 2200 * 2238 282 69 39 chr9 12316442 12317973 -129953471 - L1ME LINE L1 -4732 1664 37 198 169 46 0 chr9 12318572 12318637 -129952807 + (TA)n Simple_repeat Simple_repeat 1 68 0 25 75 0 0 chr9 12318645 12318698 -129952746 + AT_rich Low_complexity Low_complexity 1 53 0 240 239 15 0 chr9 12318718 12318785 -129952659 + (TA)n Simple_repeat Simple_repeat 1 68 0 456 104 0 0 chr9 12318785 12318852 -129952592 + (CA)n Simple_repeat Simple_repeat 2 68 0 207 250 0 0 chr9 12319619 12319663 -129951781 + (CA)n Simple_repeat Simple_repeat 2 45 0 293 331 26 45 chr9 12320028 12320182 -129951262 - L2 LINE L2 -36 3277 3127 4772 173 61 24 chr9 12321590 12322275 -129949169 - L1MC1 LINE L1 -1 6332 5600 2405 67 0 10 chr9 12322275 12322589 -129948855 - AluY SINE Alu 0 311 1 4772 173 61 24 chr9 12322589 12322874 -129948570 - L1MC1 LINE L1 -733 5600 5327 2812 157 43 26 chr9 12322886 12323473 -129947971 - L1MA5A LINE L1 -10 6287 5691 2551 159 16 3 chr9 12323476 12324292 -129947152 - MER66A-int LTR ERV1 -702 5974 5018 7092 178 35 24 chr9 12324315 12325669 -129945775 - MER66A-int LTR ERV1 -4098 2578 1210 2932 216 30 69 chr9 12326030 12326981 -129944463 - MER66A-int LTR ERV1 -5562 1114 67 1133 203 22 87 chr9 12327022 12327428 -129944016 - MER66A LTR ERV1 -40 438 97 1725 203 32 15 chr9 12327467 12328011 -129943433 - L1MC/D LINE L1 -743 5403 4923 517 188 55 16 chr9 12327986 12328133 -129943311 - L1MA5A LINE L1 -756 5390 5241 * 347 335 108 20 chr9 12329172 12329375 -129942069 - MIR SINE MIR -7 255 35 479 244 39 13 chr9 12329429 12329471 -129941973 - L1MA10 LINE L1 -8 6326 6285 1947 262 57 28 chr9 12329471 12330438 -129941006 - L1ME1 LINE L1 -44 6122 5135 354 217 0 54 chr9 12330530 12330622 -129940822 - L1MC/D LINE L1 -1380 4766 4680 21 0 0 0 chr9 12331800 12331821 -129939623 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 12333986 12334008 -129937436 + AT_rich Low_complexity Low_complexity 1 22 0 773 217 144 37 chr9 12334261 12334560 -129936884 + MLT1C LTR MaLR 6 336 -131 3820 125 14 163 chr9 12334560 12336099 -129935345 + pTR5 LTR ERV1 781 2606 0 843 218 6 6 chr9 12336099 12336269 -129935175 + MLT1C LTR MaLR 296 465 -2 222 358 44 15 chr9 12336765 12336902 -129934542 - MER5A DNA MER1_type -48 141 1 223 288 27 55 chr9 12336949 12337022 -129934422 + MER5A DNA MER1_type 54 124 -65 396 0 0 0 chr9 12339337 12339381 -129932063 + (TATG)n Simple_repeat Simple_repeat 2 45 0 947 190 0 0 chr9 12339383 12339541 -129931903 - FAM SINE Alu -17 158 1 2446 161 19 26 chr9 12340949 12341416 -129930028 + MLT1C LTR MaLR 2 465 -2 343 198 0 23 chr9 12342089 12342175 -129929269 + L1MA9 LINE L1 6215 6298 -14 1110 228 44 34 chr9 12342347 12342712 -129928732 + MLT1B LTR MaLR 6 390 0 25 0 0 0 chr9 12344576 12344601 -129926843 + AT_rich Low_complexity Low_complexity 1 25 0 498 320 157 29 chr9 12345469 12345750 -129925694 - L3 LINE CR1 -5 1572 1256 234 274 217 0 chr9 12345761 12345867 -129925577 - L2 LINE L2 0 3313 3185 231 213 0 16 chr9 12346133 12346194 -129925250 - Charlie7 DNA MER1_type -2512 100 41 22 35 0 0 chr9 12346648 12346677 -129924767 + AT_rich Low_complexity Low_complexity 1 29 0 217 354 0 0 chr9 12346677 12346756 -129924688 - L2 LINE L2 -5 3308 3230 22 35 0 0 chr9 12349277 12349306 -129922138 + AT_rich Low_complexity Low_complexity 1 29 0 2512 111 6 3 chr9 12350337 12350698 -129920746 - THE1B LTR MaLR -2 362 1 256 297 22 43 chr9 12350905 12351043 -129920401 + L1MC/D LINE L1 5616 5750 -2058 2073 131 0 10 chr9 12351100 12351412 -129920032 + AluSx SINE Alu 4 312 0 27 49 0 0 chr9 12351582 12351623 -129919821 + AT_rich Low_complexity Low_complexity 1 41 0 24 53 0 0 chr9 12351680 12351718 -129919726 + AT_rich Low_complexity Low_complexity 1 38 0 783 131 0 48 chr9 12351798 12351943 -129919501 - L1MA3 LINE L1 -2 6303 6166 9678 39 0 4 chr9 12351943 12353629 -129917815 - L1PA5 LINE L1 -270 5884 4205 1128 56 0 0 chr9 12353623 12353766 -129917678 + L1PA5 LINE L1 5901 6043 -111 * 1964 68 0 0 chr9 12353629 12353872 -129917572 + L1PA5 LINE L1 5901 6149 -5 5014 155 17 42 chr9 12354044 12355237 -129916207 - L1MA3 LINE L1 -118 6187 5023 2187 154 32 2 chr9 12355237 12355640 -129915804 + L1MA3 LINE L1 4612 5026 -1120 351 222 167 9 chr9 12355677 12355785 -129915659 - L2 LINE L2 -7 3306 3182 298 380 25 0 chr9 12358237 12358358 -129913086 + MIR3 SINE MIR 57 180 -28 180 0 0 0 chr9 12358853 12358873 -129912571 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 22 35 0 0 chr9 12358916 12358945 -129912499 + AT_rich Low_complexity Low_complexity 1 29 0 190 339 0 32 chr9 12358947 12359009 -129912435 - MIR SINE MIR -173 89 30 628 272 117 58 chr9 12360076 12360579 -129910865 + HAL1 LINE L1 1586 2118 -389 21 0 0 0 chr9 12361083 12361104 -129910340 + AT_rich Low_complexity Low_complexity 1 21 0 1957 141 3 10 chr9 12361120 12361417 -129910027 + AluSq SINE Alu 3 297 -16 3980 33 0 6 chr9 12361419 12361941 -129909503 + L1PA3 LINE L1 5674 6155 0 26 0 0 0 chr9 12362152 12362178 -129909266 + AT_rich Low_complexity Low_complexity 1 26 0 297 363 20 10 chr9 12362950 12363052 -129908392 - L2 LINE L2 -17 3255 3153 857 212 33 24 chr9 12363643 12363855 -129907589 + MER20 DNA MER1_type 2 215 -4 41 66 0 0 chr9 12363979 12364055 -129907389 + AT_rich Low_complexity Low_complexity 1 76 0 280 308 136 42 chr9 12364067 12364684 -129906760 - HAL1b LINE L1 -601 747 73 24 67 0 0 chr9 12364839 12364884 -129906560 + AT_rich Low_complexity Low_complexity 1 45 0 427 219 171 0 chr9 12365272 12365377 -129906067 - MER5C DNA MER1_type -200 124 2 1550 164 0 93 chr9 12365884 12365919 -129905525 - MER4A LTR ERV1 0 664 627 1457 56 0 0 chr9 12365919 12366099 -129905345 + L1PA3 LINE L1 5976 6155 0 1550 164 0 93 chr9 12366099 12366386 -129905058 - MER4A LTR ERV1 -37 627 372 265 111 22 22 chr9 12366438 12366483 -129904961 - MER4A LTR ERV1 -566 98 54 1151 157 30 0 chr9 12366701 12366898 -129904546 - L1PA16 LINE L1 -9 7595 7393 3347 89 25 0 chr9 12366943 12367417 -129904027 - LTR19A LTR ERV1 0 486 1 39530 77 31 12 chr9 12367417 12372903 -129898541 - LTR19A-int LTR ERV1 0 5586 1 1519 90 50 0 chr9 12372904 12373290 -129898154 - LTR19A LTR ERV1 0 486 1 10691 236 31 15 chr9 12373720 12377409 -129894035 - L1PA16 LINE L1 -261 7343 3599 1996 176 12 18 chr9 12377411 12377723 -129893721 + MER1B DNA MER1_type 1 312 -2400 5275 74 0 25 chr9 12377723 12378429 -129893015 - LTR12 LTR ERV1 0 688 1 1996 176 12 18 chr9 12378429 12378457 -129892987 + MER1B DNA MER1_type 312 339 0 846 210 4 4 chr9 12378458 12378693 -129892751 - L1PA16 LINE L1 -3981 3603 3262 650 342 10 28 chr9 12379797 12380189 -129891255 - L1PA16 LINE L1 -7187 394 10 3030 217 25 130 chr9 12380200 12381612 -129889832 - L1 LINE L1 -2301 3845 2581 21 0 0 0 chr9 12382422 12382443 -129889001 + AT_rich Low_complexity Low_complexity 1 21 0 5725 110 3 34 chr9 12382764 12383685 -129887759 - L1PA11 LINE L1 0 6174 5302 23 54 0 0 chr9 12383737 12383774 -129887670 + AT_rich Low_complexity Low_complexity 1 37 0 482 245 13 40 chr9 12383936 12384087 -129887357 + L1ME2 LINE L1 5952 6098 -66 10152 197 22 12 chr9 12384405 12387467 -129883977 + L1PA15 LINE L1 2963 6049 -116 686 167 12 24 chr9 12387654 12387822 -129883622 + CT-rich Low_complexity Low_complexity 4 169 0 26 50 0 0 chr9 12387858 12387898 -129883546 + AT_rich Low_complexity Low_complexity 1 40 0 21 36 0 0 chr9 12387957 12387985 -129883459 + AT_rich Low_complexity Low_complexity 1 28 0 9206 30 0 10 chr9 12388338 12390230 -129881214 - L1PA4 LINE L1 0 6155 4275 3345 131 16 0 chr9 12390330 12390833 -129880611 - HERVK22 LTR ERVK -6326 511 1 2373 167 76 25 chr9 12390833 12391317 -129880127 - LTR22 LTR ERVK 0 509 1 1284 257 117 8 chr9 12391317 12391885 -129879559 + L1MB3 LINE L1 4784 5418 -745 5594 113 10 18 chr9 12391886 12392755 -129878689 + L1PA10 LINE L1 5307 6168 0 2221 216 13 11 chr9 12392755 12393282 -129878162 + L1MB3 LINE L1 5652 6181 -2 353 286 0 0 chr9 12393325 12393423 -129878021 + L1M4 LINE L1 4617 4714 -1432 30 45 0 0 chr9 12394033 12394077 -129877367 + AT_rich Low_complexity Low_complexity 1 44 0 7277 196 33 40 chr9 12394279 12394992 -129876452 + L1M4c LINE L1 163 880 -5504 12702 44 1 0 chr9 12394992 12397340 -129874104 + L1PA4 LINE L1 3812 6152 -3 7277 196 33 40 chr9 12397340 12398026 -129873418 + L1M4c LINE L1 880 1549 -4835 1046 244 13 13 chr9 12398026 12398264 -129873180 + MER8 DNA MER2_type 2 239 0 7277 196 33 40 chr9 12398264 12398613 -129872831 + L1M4c LINE L1 1549 1899 -4485 * 7386 251 30 28 chr9 12398611 12398837 -129872607 + L1M4c LINE L1 2261 2485 -3897 2060 147 45 14 chr9 12398837 12399190 -129872254 - THE1B LTR MaLR 0 364 1 7386 251 30 28 chr9 12399190 12401725 -129869719 + L1M4c LINE L1 2485 5025 -1357 2246 174 65 26 chr9 12401725 12402215 -129869229 - LTR22 LTR ERVK 0 509 1 22752 85 4 2 chr9 12402215 12406725 -129864719 - HERVK22 LTR ERVK 0 6837 2314 432 173 0 24 chr9 12406708 12406846 -129864598 - HERVK22 LTR ERVK -6043 794 625 * 4280 268 65 30 chr9 12406997 12409572 -129861872 - L1PA13 LINE L1 -3481 3316 550 2169 80 14 3 chr9 12409572 12409860 -129861584 + AluSc SINE Alu 1 291 -18 4280 268 65 30 chr9 12409860 12410430 -129861014 - L1PA13 LINE L1 -6247 550 1 449 279 25 0 chr9 12411119 12411241 -129860203 + L1M4 LINE L1 825 949 -5593 1801 256 81 18 chr9 12411308 12412187 -129859257 + L1M4 LINE L1 1443 2466 -4180 2222 118 0 0 chr9 12412194 12412500 -129858944 + AluSg SINE Alu 1 306 -4 1272 144 43 0 chr9 12412521 12412729 -129858715 + MER30 DNA MER1_type 14 230 0 336 121 52 0 chr9 12412754 12412812 -129858632 - MER61D LTR ERV1 0 501 441 273 57 0 0 chr9 12412860 12412895 -129858549 + (A)n Simple_repeat Simple_repeat 1 35 0 1075 179 12 64 chr9 12412897 12413148 -129858296 - MLT1B LTR MaLR -28 362 125 408 114 171 0 chr9 12413152 12413222 -129858222 - THE1A LTR MaLR -273 82 1 11075 112 10 2 chr9 12413222 12414791 -129856653 - THE1A-int LTR MaLR 0 1580 1 2553 108 6 0 chr9 12414791 12415143 -129856301 - THE1A LTR MaLR 0 355 2 2447 187 22 9 chr9 12415145 12415697 -129855747 - L1 LINE L1 -1371 6194 5636 1638 195 16 8 chr9 12415697 12416039 -129855405 + MER61C LTR ERV1 1 434 0 1435 254 28 36 chr9 12416039 12416429 -129855015 + MER61C-int LTR ERV1 2 388 -4829 * 25457 125 55 34 chr9 12416427 12417886 -129853558 + MER61C-int LTR ERV1 666 2093 -3124 2321 72 0 0 chr9 12417886 12418176 -129853268 - AluY SINE Alu -11 300 11 25457 125 55 34 chr9 12418176 12418892 -129852552 + MER61C-int LTR ERV1 2093 2793 -2424 2229 97 0 10 chr9 12418892 12419214 -129852230 + AluSp SINE Alu 1 319 0 25457 125 55 34 chr9 12419214 12421492 -129849952 + MER61C-int LTR ERV1 2793 5216 -1 1469 178 69 7 chr9 12421492 12421816 -129849628 + MER61C LTR ERV1 1 431 -2 4084 223 36 4 chr9 12421819 12422800 -129848644 - L1 LINE L1 -1927 5638 4627 3942 161 14 56 chr9 12422797 12423352 -129848092 + L1PA16 LINE L1 5389 5903 -263 * 2169 125 3 0 chr9 12423352 12423657 -129847787 + AluSx SINE Alu 2 307 -5 3942 161 14 56 chr9 12423657 12423892 -129847552 + L1PA16 LINE L1 5903 6146 -20 * 6422 224 13 79 chr9 12423881 12425538 -129845906 - L1 LINE L1 -5046 2519 972 444 237 13 32 chr9 12427274 12427430 -129844014 - L1M4 LINE L1 -986 5160 5008 1383 178 62 38 chr9 12427444 12427669 -129843775 + MER44D DNA MER2_type 11 229 -2262 303 93 0 0 chr9 12427669 12427712 -129843732 + (CA)n Simple_repeat Simple_repeat 2 44 0 1383 178 62 38 chr9 12427712 12427806 -129843638 + MER44D DNA MER2_type 229 608 -1 1470 207 38 90 chr9 12427816 12427990 -129843454 - L1M4 LINE L1 -1149 4997 4816 1806 169 4 4 chr9 12427990 12428268 -129843176 - AluJb SINE Alu -32 280 3 1470 207 38 90 chr9 12428268 12428614 -129842830 - L1M4 LINE L1 -1330 4816 4504 586 256 123 10 chr9 12428622 12428825 -129842619 - L1M4 LINE L1 -2419 3727 3502 216 0 0 0 chr9 12428827 12428851 -129842593 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1583 163 43 29 chr9 12428997 12429347 -129842097 - L1MA7 LINE L1 -1 6290 5936 582 222 24 77 chr9 12429347 12429595 -129841849 - L1M4 LINE L1 -2650 3496 3262 4796 203 5 0 chr9 12429598 12430437 -129841007 - HUERS-P3 LTR ERV1 -2332 4759 3917 1795 273 15 35 chr9 12430465 12431008 -129840436 - HUERS-P3 LTR ERV1 -6242 2677 2146 5303 253 27 21 chr9 12431039 12432484 -129838960 - HUERS-P3 LTR ERV1 -5247 1749 296 1290 256 95 72 chr9 12432688 12433515 -129837929 - L1ME2 LINE L1 -2 6162 5283 216 0 0 0 chr9 12433515 12433539 -129837905 + (CA)n Simple_repeat Simple_repeat 2 25 0 1290 256 95 72 chr9 12433539 12434124 -129837320 - L1ME2 LINE L1 -881 5283 4713 5467 180 29 8 chr9 12434172 12435010 -129836434 - L1MA3 LINE L1 0 6305 5421 2862 156 37 89 chr9 12435010 12435739 -129835705 + LTR8 LTR ERV1 1 691 0 5467 180 29 8 chr9 12435739 12436351 -129835093 - L1MA3 LINE L1 -884 5421 4823 3060 230 64 39 chr9 12436356 12437324 -129834120 + MER61E-int LTR ERV1 5998 6989 -7 295 203 8 136 chr9 12437339 12437457 -129833987 + MER61E LTR ERV1 2 104 -465 * 499 250 23 15 chr9 12437444 12437576 -129833868 + LTR25 LTR ERV1 248 380 -414 250 217 14 43 chr9 12437566 12437635 -129833809 + MER61E LTR ERV1 99 165 -404 * 1104 159 56 0 chr9 12437645 12437840 -129833604 + MER61E LTR ERV1 342 547 -22 1794 158 50 7 chr9 12437883 12438005 -129833439 + AluSx SINE Alu 1 116 -196 348 43 0 0 chr9 12438005 12438051 -129833393 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 1794 158 50 7 chr9 12438051 12438225 -129833219 + AluSx SINE Alu 116 310 -2 235 222 56 0 chr9 12438515 12438569 -129832875 + L2 LINE L2 3257 3313 0 186 306 74 0 chr9 12439242 12439350 -129832094 + MIR SINE MIR 97 212 -50 34 55 0 0 chr9 12439396 12439451 -129831993 + AT_rich Low_complexity Low_complexity 1 55 0 23 0 0 0 chr9 12440505 12440528 -129830916 + AT_rich Low_complexity Low_complexity 1 23 0 362 39 19 0 chr9 12440635 12440687 -129830757 + (CA)n Simple_repeat Simple_repeat 2 54 0 739 293 150 26 chr9 12440704 12441131 -129830313 - MLT1H LTR MaLR -15 534 55 1544 179 0 30 chr9 12441226 12441517 -129829927 - AluJb SINE Alu 0 305 23 1187 205 5 0 chr9 12443557 12443767 -129827677 + AluJo SINE Alu 1 211 -101 704 175 0 111 chr9 12443816 12443987 -129827457 + FRAM SINE Alu 1 152 -14 25 31 0 0 chr9 12443994 12444026 -129827418 + AT_rich Low_complexity Low_complexity 1 32 0 222 358 138 22 chr9 12445881 12446236 -129825208 - L2 LINE L2 -1028 2286 1891 188 343 28 56 chr9 12446521 12446629 -129824815 + L2 LINE L2 3149 3253 -19 293 303 85 66 chr9 12446829 12447040 -129824404 - MLT1J LTR MaLR -74 437 223 327 385 21 17 chr9 12447375 12447609 -129823835 + L2 LINE L2 2227 2461 -853 17512 42 1 5 chr9 12447944 12450145 -129821299 + L1P LINE L1 2992 5183 -963 4946 204 13 1 chr9 12450259 12451135 -129820309 - L1M1 LINE L1 -6668 897 12 727 270 27 31 chr9 12451130 12451612 -129819832 - L1M4 LINE L1 -1445 4701 4222 * 2282 272 45 51 chr9 12451623 12452902 -129818542 - L1M4 LINE L1 -1843 4303 3033 923 255 41 52 chr9 12452902 12453271 -129818173 + MLT1A1 LTR MaLR 1 365 0 2282 272 45 51 chr9 12453271 12453563 -129817881 - L1M4 LINE L1 -3113 3033 2741 1129 317 62 49 chr9 12453763 12454786 -129816658 + L1MEc LINE L1 39 1139 -5257 23 92 0 0 chr9 12454797 12454862 -129816582 + AT_rich Low_complexity Low_complexity 1 65 0 225 313 134 0 chr9 12454894 12455006 -129816438 + L1MEc LINE L1 1194 1320 -5076 2451 212 49 11 chr9 12455083 12455696 -129815748 + L1MD3 LINE L1 7350 7985 -10 1680 66 0 9 chr9 12459233 12459460 -129811984 - L1PA7 LINE L1 -3 6151 5927 41 93 0 0 chr9 12461454 12461572 -129809872 + AT_rich Low_complexity Low_complexity 1 118 0 213 39 0 0 chr9 12462030 12462056 -129809388 + (A)n Simple_repeat Simple_repeat 1 26 0 183 304 72 36 chr9 12462226 12462364 -129809080 - MIR SINE MIR 0 262 120 25 31 0 0 chr9 12462461 12462493 -129808951 + AT_rich Low_complexity Low_complexity 1 32 0 906 61 0 30 chr9 12462498 12462629 -129808815 + SVA Other Other 1260 1386 0 533 202 0 18 chr9 12462629 12462743 -129808701 - MER104 DNA Tc2 -64 116 5 938 265 118 42 chr9 12463710 12464117 -129807327 + LTR38 LTR ERV1 87 524 -32 321 26 0 0 chr9 12464360 12464398 -129807046 + (TG)n Simple_repeat Simple_repeat 1 38 0 2604 215 21 36 chr9 12464561 12465222 -129806222 - L1MC3 LINE L1 -9 7776 7126 1456 221 135 29 chr9 12465229 12465682 -129805762 - MLT1D LTR MaLR -4 501 1 1656 147 40 0 chr9 12465817 12466068 -129805376 + Charlie3 DNA MER1_type 1 261 -2449 886 201 45 76 chr9 12466085 12466349 -129805095 - L1MA9 LINE L1 -330 5982 5727 539 316 73 89 chr9 12466787 12467094 -129804350 - ERVL LTR ERVL -2117 3647 3337 624 198 32 0 chr9 12467094 12467220 -129804224 - L1PA16 LINE L1 -14 6152 6023 539 316 73 89 chr9 12467220 12467747 -129803697 - ERVL LTR ERVL -2427 3337 2826 2331 191 107 31 chr9 12468067 12468675 -129802769 - LTR28 LTR ERV1 -395 625 1 852 341 66 41 chr9 12468675 12469284 -129802160 - ERVL LTR ERVL -3136 2628 2005 1600 204 36 40 chr9 12469292 12469738 -129801706 - L1M4 LINE L1 -451 5733 5290 6693 229 36 19 chr9 12469738 12471539 -129799905 + Cheshire DNA MER1_type 589 2419 -1 416 245 129 68 chr9 12471541 12472263 -129799181 + L1MC4 LINE L1 5901 6592 -1216 3337 243 43 50 chr9 12472670 12473795 -129797649 + L1MC4 LINE L1 6669 7785 -257 393 291 82 41 chr9 12473853 12473953 -129797491 + L1M4 LINE L1 4297 4391 -1755 1571 183 3 30 chr9 12473953 12474248 -129797196 - AluJb SINE Alu -25 287 1 393 291 82 41 chr9 12474248 12474463 -129796981 + L1M4 LINE L1 4391 4625 -1521 1467 162 68 39 chr9 12475710 12476019 -129795425 + MER44D DNA MER2_type 22 609 0 226 321 87 98 chr9 12476077 12476445 -129794999 + L2 LINE L2 2950 3313 0 1524 175 7 59 chr9 12476814 12477117 -129794327 + AluJb SINE Alu 3 289 -23 36 23 0 0 chr9 12477135 12477178 -129794266 + AT_rich Low_complexity Low_complexity 1 43 0 212 0 36 0 chr9 12478584 12478612 -129792832 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 993 263 146 38 chr9 12480225 12480731 -129790713 - MLT1E1 LTR MaLR -4 650 90 1575 154 113 0 chr9 12480789 12481082 -129790362 - MER44D DNA MER2_type 0 609 14 518 0 16 0 chr9 12481224 12481286 -129790158 + (TAGA)n Simple_repeat Simple_repeat 2 64 0 256 134 60 0 chr9 12481286 12481353 -129790091 + (TA)n Simple_repeat Simple_repeat 2 72 0 38 61 0 0 chr9 12481557 12481623 -129789821 + AT_rich Low_complexity Low_complexity 1 66 0 360 299 246 9 chr9 12482476 12482687 -129788757 + MIR SINE MIR 2 262 0 290 143 76 162 chr9 12482883 12482930 -129788514 - MIR SINE MIR -11 251 216 2128 112 0 3 chr9 12482930 12483233 -129788211 - AluSx SINE Alu -8 304 3 290 143 76 162 chr9 12483233 12483290 -129788154 - MIR SINE MIR -46 216 156 192 307 47 39 chr9 12483777 12483904 -129787540 + L2 LINE L2 2271 2398 -916 1670 214 114 72 chr9 12484147 12484714 -129786730 + L1ME2 LINE L1 5435 6038 -126 3779 132 8 37 chr9 12484714 12485368 -129786076 - MER41B LTR ERV1 0 635 1 1670 214 114 72 chr9 12485368 12485492 -129785952 + L1ME2 LINE L1 6038 6155 -9 1167 228 44 35 chr9 12485611 12486057 -129785387 + LTR56 LTR ERV1 12 437 0 332 206 0 14 chr9 12486396 12486469 -129784975 - LTR27 LTR ERV1 0 1020 949 2052 250 27 22 chr9 12486521 12487416 -129784028 - LTR27 LTR ERV1 -70 950 1 1247 215 29 0 chr9 12488713 12488867 -129782577 - AluJo SINE Alu -24 288 123 410 0 0 20 chr9 12488867 12488918 -129782526 + (TTTA)n Simple_repeat Simple_repeat 4 53 0 1247 215 29 0 chr9 12488918 12489009 -129782435 - AluJo SINE Alu -189 123 36 219 346 0 0 chr9 12489749 12489827 -129781617 - MIR SINE MIR -26 236 159 24 0 0 0 chr9 12490891 12490915 -129780529 + AT_rich Low_complexity Low_complexity 1 24 0 237 119 0 0 chr9 12491115 12491157 -129780287 + (CA)n Simple_repeat Simple_repeat 2 43 0 234 288 0 0 chr9 12491167 12491226 -129780218 + MLT1J2 LTR MaLR 93 151 -299 269 278 41 30 chr9 12491895 12492064 -129779380 - L1MC/D LINE L1 -1926 5882 5712 21 57 0 0 chr9 12494779 12494814 -129776630 + AT_rich Low_complexity Low_complexity 1 35 0 700 255 43 64 chr9 12495315 12495734 -129775710 - Charlie1 DNA MER1_type -9 2752 2343 387 268 0 0 chr9 12495826 12495983 -129775461 + (TA)n Simple_repeat Simple_repeat 1 157 0 * 462 251 0 0 chr9 12495967 12496130 -129775314 + (TATATG)n Simple_repeat Simple_repeat 5 167 0 23 54 0 0 chr9 12496172 12496209 -129775235 + AT_rich Low_complexity Low_complexity 1 37 0 2423 65 0 7 chr9 12496350 12496656 -129774788 + AluY SINE Alu 1 304 -7 349 172 7 6 chr9 12498354 12498456 -129772988 - L1PB3 LINE L1 -667 5484 5382 * 3130 117 83 62 chr9 12498455 12499081 -129772363 + L1PB3 LINE L1 5516 6154 0 24 53 0 0 chr9 12499618 12499656 -129771788 + AT_rich Low_complexity Low_complexity 1 38 0 369 163 35 12 chr9 12500018 12500104 -129771340 + L1MCc LINE L1 27 114 -6309 804 301 9 0 chr9 12500189 12500402 -129771042 + ERVL LTR ERVL 338 552 -5212 6174 183 225 35 chr9 12500402 12501876 -129769568 + MER52A LTR ERV1 1 1755 0 591 292 43 11 chr9 12501876 12502110 -129769334 + ERVL LTR ERVL 549 863 -4901 3762 222 63 20 chr9 12502116 12502334 -129769110 + ERVL LTR ERVL 4548 4755 -1009 2421 212 11 0 chr9 12502334 12502801 -129768643 + MER70A LTR ERVL 1 472 0 3762 222 63 20 chr9 12502801 12503423 -129768021 + ERVL LTR ERVL 4755 5424 -340 387 250 0 0 chr9 12503496 12503584 -129767860 + ERVL LTR ERVL 5534 5621 -143 21 89 0 0 chr9 12503710 12503766 -129767678 + AT_rich Low_complexity Low_complexity 1 56 0 213 294 130 11 chr9 12505597 12505689 -129765755 - MIR SINE MIR -24 238 136 204 0 0 36 chr9 12505691 12505719 -129765725 + (TTTA)n Simple_repeat Simple_repeat 2 180 0 1002 136 0 26 chr9 12505719 12505873 -129765571 - AluSg/x SINE Alu -28 284 135 187 319 0 0 chr9 12505876 12505923 -129765521 - MIR SINE MIR -64 144 98 24 0 0 0 chr9 12506161 12506185 -129765259 + AT_rich Low_complexity Low_complexity 1 24 0 295 315 148 0 chr9 12507051 12507159 -129764285 + L2 LINE L2 3116 3239 -33 2364 93 0 0 chr9 12508543 12508845 -129762599 - AluSc SINE Alu -7 302 1 22 56 0 0 chr9 12509267 12509303 -129762141 + AT_rich Low_complexity Low_complexity 1 36 0 1413 131 0 38 chr9 12510853 12511089 -129760355 + MER30 DNA MER1_type 4 230 0 2132 166 22 0 chr9 12511197 12511553 -129759891 - THE1B LTR MaLR 0 364 1 10390 120 12 27 chr9 12511553 12513158 -129758286 - THE1B-int LTR MaLR 0 1580 1 2207 146 22 0 chr9 12513158 12513514 -129757930 - THE1B LTR MaLR 0 364 1 2345 94 0 0 chr9 12514050 12514349 -129757095 - AluSx SINE Alu -13 299 1 759 262 33 19 chr9 12514931 12515141 -129756303 + MIR SINE MIR 22 234 -28 22 0 0 0 chr9 12521634 12521656 -129749788 + AT_rich Low_complexity Low_complexity 1 22 0 436 183 0 0 chr9 12521852 12521923 -129749521 + AluJ/FLAM SINE Alu 12 82 -230 23 92 0 0 chr9 12521942 12522007 -129749437 + AT_rich Low_complexity Low_complexity 1 65 0 250 227 193 85 chr9 12523220 12523396 -129748048 + MER112 DNA MER1_type 1 195 -65 75 57 0 0 chr9 12524356 12524480 -129746964 + AT_rich Low_complexity Low_complexity 1 124 0 240 175 12 25 chr9 12524860 12524940 -129746504 + (TA)n Simple_repeat Simple_repeat 1 79 0 1806 181 112 20 chr9 12525351 12525743 -129745701 + MSTA LTR MaLR 1 428 0 8272 153 27 52 chr9 12525745 12526109 -129745335 + MSTA-int LTR MaLR 3 374 -1206 2214 117 3 13 chr9 12526109 12526425 -129745019 - AluSp SINE Alu 0 313 1 8272 153 27 52 chr9 12526425 12527678 -129743766 + MSTA-int LTR MaLR 374 1580 0 1738 172 158 11 chr9 12527678 12528051 -129743393 + MSTA LTR MaLR 1 428 0 4713 198 91 8 chr9 12530242 12531184 -129740260 + LTR28 LTR ERV1 1 1020 0 45 27 0 27 chr9 12532651 12532667 -129738777 + AT_rich Low_complexity Low_complexity 1 16 -56 1989 92 0 86 chr9 12532667 12532971 -129738473 + AluSq SINE Alu 1 278 -35 45 27 0 27 chr9 12532971 12533028 -129738416 + AT_rich Low_complexity Low_complexity 16 72 0 385 239 93 133 chr9 12533028 12533329 -129738115 - MLT1J2 LTR MaLR -33 417 83 186 429 97 9 chr9 12534278 12534609 -129736835 + L2 LINE L2 2571 2930 -384 350 292 8 54 chr9 12534826 12534956 -129736488 + L2 LINE L2 3184 3307 -6 353 337 95 19 chr9 12535014 12535278 -129736166 + LTR16A LTR ERVL 78 361 -89 765 295 82 21 chr9 12535353 12535733 -129735711 + HERV16 LTR ERVL 1 403 -4593 1221 291 78 13 chr9 12535954 12536405 -129735039 + HERV16 LTR ERVL 686 1165 -3831 471 348 82 49 chr9 12536441 12536769 -129734675 + HERV16 LTR ERVL 1243 1581 -3415 643 309 32 12 chr9 12536844 12537093 -129734351 + HERV16 LTR ERVL 1741 1994 -3002 559 234 6 51 chr9 12537106 12537264 -129734180 - MLT1A1 LTR MaLR -214 151 1 994 363 59 32 chr9 12537398 12537965 -129733479 + HERV16 LTR ERVL 2736 3286 -2478 2452 127 5 11 chr9 12537965 12538342 -129733102 + THE1C LTR MaLR 1 375 0 9849 123 18 31 chr9 12538342 12539942 -129731502 + THE1C-int LTR MaLR 1 1580 0 2153 152 5 24 chr9 12539942 12540324 -129731120 + THE1C LTR MaLR 1 375 0 994 363 59 32 chr9 12540324 12540828 -129730616 + HERV16 LTR ERVL 3285 3903 -1861 866 213 96 5 chr9 12541387 12541575 -129729869 - Tigger7 DNA MER2_type -2259 228 24 405 345 92 25 chr9 12541852 12542289 -129729155 + HERV16 LTR ERVL 4917 5382 -382 296 345 30 71 chr9 12542479 12542676 -129728768 + LTR16A LTR ERVL 81 269 -181 302 232 14 0 chr9 12542720 12542789 -129728655 + LTR16A LTR ERVL 381 450 0 219 69 0 0 chr9 12543309 12543338 -129728106 + (GGAGAA)n Simple_repeat Simple_repeat 3 31 0 312 330 27 0 chr9 12543943 12544055 -129727389 - MIR SINE MIR -112 150 36 196 346 37 12 chr9 12545178 12545259 -129726185 - MIR SINE MIR -58 150 68 298 306 119 15 chr9 12548271 12548405 -129723039 - MIR SINE MIR -58 204 57 24 67 0 0 chr9 12548468 12548513 -129722931 + AT_rich Low_complexity Low_complexity 1 45 0 2482 59 0 3 chr9 12548767 12549070 -129722374 + AluY SINE Alu 1 302 -9 209 128 0 26 chr9 12549177 12549216 -129722228 + (TAAAA)n Simple_repeat Simple_repeat 2 39 0 1589 191 32 0 chr9 12549297 12549580 -129721864 + AluJb SINE Alu 16 307 -5 5041 183 41 22 chr9 12550794 12552552 -129718892 - L1MA9 LINE L1 -20 6292 4495 26 0 0 0 chr9 12554034 12554060 -129717384 + AT_rich Low_complexity Low_complexity 1 26 0 208 385 9 0 chr9 12554518 12554627 -129716817 + GA-rich Low_complexity Low_complexity 1 110 0 23 54 0 0 chr9 12555192 12555229 -129716215 + AT_rich Low_complexity Low_complexity 1 37 0 23 54 0 0 chr9 12555284 12555321 -129716123 + AT_rich Low_complexity Low_complexity 1 37 0 282 289 99 8 chr9 12555932 12556053 -129715391 - Charlie1 DNA MER1_type -837 1924 1793 514 250 0 0 chr9 12556053 12556157 -129715287 + Tigger3(Golem) DNA MER2_type 1 104 -2925 3075 143 51 11 chr9 12556167 12556735 -129714709 + Tigger3(Golem) DNA MER2_type 2391 2981 -48 22 0 0 0 chr9 12557199 12557221 -129714223 + AT_rich Low_complexity Low_complexity 1 22 0 258 312 55 0 chr9 12557228 12557337 -129714107 - MER104 DNA Tc2 -25 155 41 931 144 32 32 chr9 12557867 12558054 -129713390 - L1MA9 LINE L1 -331 5981 5795 2268 164 26 55 chr9 12558078 12558119 -129713325 - L1MA9 LINE L1 -1948 4198 4157 2070 134 3 0 chr9 12558119 12558424 -129713020 - AluSx SINE Alu -6 306 1 2268 164 26 55 chr9 12558424 12558875 -129712569 - L1MA9 LINE L1 -1989 4157 3720 1942 164 42 14 chr9 12558876 12559266 -129712178 + MLT2A2 LTR ERVL 1 304 -149 4517 261 89 62 chr9 12559271 12559345 -129712099 + L1MCa LINE L1 1540 1611 -4835 1999 139 16 0 chr9 12559345 12559662 -129711782 + L1PA15 LINE L1 5827 6148 -17 4517 261 89 62 chr9 12559662 12561036 -129710408 + L1MCa LINE L1 1611 2946 -3500 879 103 0 0 chr9 12561036 12561152 -129710292 + AluJb SINE Alu 21 136 -176 4517 261 89 62 chr9 12561152 12562281 -129709163 + L1MCa LINE L1 2946 4043 -2403 180 0 0 0 chr9 12562281 12562301 -129709143 + (TAA)n Simple_repeat Simple_repeat 2 21 0 4517 261 89 62 chr9 12562301 12563667 -129707777 + L1MCa LINE L1 4043 5371 -1075 1109 37 0 0 chr9 12563667 12563802 -129707642 + L1PA3 LINE L1 6021 6155 0 4517 261 89 62 chr9 12563802 12563911 -129707533 + L1MCa LINE L1 5371 5476 -970 189 0 0 0 chr9 12563911 12563932 -129707512 + (TA)n Simple_repeat Simple_repeat 1 21 0 4517 261 89 62 chr9 12563932 12564232 -129707212 + L1MCa LINE L1 5476 6268 -178 298 67 44 0 chr9 12564233 12564278 -129707166 - U2 snRNA snRNA -141 47 1 1013 272 53 100 chr9 12564302 12564964 -129706480 + MER45C DNA AcHobo 1 631 -322 254 268 0 0 chr9 12564960 12565016 -129706428 + MER45C DNA AcHobo 898 953 0 * 472 264 0 8 chr9 12565036 12565161 -129706283 + L1MA10 LINE L1 6202 6325 -9 201 178 0 0 chr9 12565930 12565975 -129705469 + (TA)n Simple_repeat Simple_repeat 2 46 0 198 234 16 78 chr9 12566633 12566697 -129704747 - L2 LINE L2 0 3272 3213 182 114 0 29 chr9 12568029 12568064 -129703380 + (TG)n Simple_repeat Simple_repeat 2 35 0 25 31 0 0 chr9 12568922 12568954 -129702490 + AT_rich Low_complexity Low_complexity 1 32 0 26 64 0 0 chr9 12570743 12570790 -129700654 + AT_rich Low_complexity Low_complexity 1 47 0 257 172 30 10 chr9 12570866 12570965 -129700479 + (TA)n Simple_repeat Simple_repeat 1 101 0 33 0 0 0 chr9 12571526 12571559 -129699885 + AT_rich Low_complexity Low_complexity 1 33 0 181 204 111 0 chr9 12571823 12571877 -129699567 + MER5C DNA MER1_type 264 323 -1 2063 137 0 0 chr9 12572017 12572317 -129699127 + AluSx SINE Alu 1 300 -12 646 179 22 37 chr9 12572987 12573121 -129698323 + FLAM_C SINE Alu 1 132 -1 398 163 0 12 chr9 12573121 12573201 -129698243 + GA-rich Low_complexity Low_complexity 2 80 0 235 306 65 16 chr9 12573421 12573545 -129697899 + MIR SINE MIR 116 245 -17 344 209 40 54 chr9 12573576 12573724 -129697720 + L1ME4a LINE L1 6253 6398 -3 2017 130 7 0 chr9 12575112 12575405 -129696039 + AluSg SINE Alu 1 295 -15 453 36 0 0 chr9 12575864 12575919 -129695525 + (CA)n Simple_repeat Simple_repeat 2 56 0 1564 206 20 23 chr9 12576603 12576947 -129694497 - MER2 DNA MER2_type -1 343 1 1563 197 8 64 chr9 12577208 12577584 -129693860 - MLT1B LTR MaLR -32 358 4 3613 156 95 19 chr9 12577588 12578356 -129693088 - LTR1B LTR ERV1 0 826 1 754 209 175 7 chr9 12578502 12578819 -129692625 + L1MC3 LINE L1 5084 5436 -743 2210 224 67 39 chr9 12578824 12579513 -129691931 + L1MC3 LINE L1 5624 6331 -1454 21 57 0 0 chr9 12579726 12579761 -129691683 + AT_rich Low_complexity Low_complexity 1 35 0 2917 171 6 4 chr9 12579865 12580362 -129691082 - Tigger1 DNA MER2_type 0 2418 1921 3929 165 17 4 chr9 12580362 12581084 -129690360 + L1MA3 LINE L1 5363 6093 -212 7972 218 42 10 chr9 12581168 12583276 -129688168 + L1MB1 LINE L1 3073 5246 -900 2056 126 102 42 chr9 12583276 12583638 -129687806 + MSTA LTR MaLR 1 391 -37 2071 142 3 0 chr9 12583638 12583941 -129687503 - AluSx SINE Alu -8 304 1 2056 126 102 42 chr9 12583941 12583982 -129687462 + MSTA LTR MaLR 391 428 0 8531 170 34 16 chr9 12583983 12585604 -129685840 + MSTA-int LTR MaLR 2 1651 0 2122 155 80 6 chr9 12585606 12585967 -129685477 + MSTA LTR MaLR 3 390 -38 499 171 0 0 chr9 12585968 12586044 -129685400 + THE1-int LTR MaLR 1051 1126 -454 3652 201 21 52 chr9 12586075 12586204 -129685240 + L1MB1 LINE L1 5237 5368 -800 2520 60 0 0 chr9 12586204 12586506 -129684938 + AluY SINE Alu 1 302 -9 3652 201 21 52 chr9 12586506 12587248 -129684196 + L1MB1 LINE L1 5368 6086 -82 2347 153 32 25 chr9 12587248 12587679 -129683765 - Tigger2a DNA MER2_type 0 434 1 3652 201 21 52 chr9 12587679 12587759 -129683685 + L1MB1 LINE L1 6086 6167 -1 186 315 0 55 chr9 12588107 12588180 -129683264 - MIR3 SINE MIR -43 165 97 201 307 80 0 chr9 12589098 12589173 -129682271 - L2 LINE L2 -4 3309 3229 21 57 0 0 chr9 12589293 12589328 -129682116 + AT_rich Low_complexity Low_complexity 1 35 0 2118 145 22 6 chr9 12589335 12589693 -129681751 + THE1B LTR MaLR 1 364 0 8900 126 32 82 chr9 12589693 12591356 -129680088 + THE1B-int LTR MaLR 1 1580 0 2076 163 28 3 chr9 12591356 12591711 -129679733 + THE1B LTR MaLR 1 364 0 515 329 31 45 chr9 12591711 12592003 -129679441 - L2 LINE L2 -170 3143 2856 694 292 74 3 chr9 12592007 12592305 -129679139 - HAL1 LINE L1 -730 1777 1459 37 62 0 0 chr9 12592423 12592488 -129678956 + AT_rich Low_complexity Low_complexity 1 65 0 1330 261 59 50 chr9 12592488 12593150 -129678294 - L1ME2 LINE L1 -40 6124 5457 1828 181 39 16 chr9 12593270 12593656 -129677788 - L1MA9 LINE L1 -483 5829 5435 354 332 31 62 chr9 12593891 12594117 -129677327 - HAL1 LINE L1 -1577 930 712 427 256 138 0 chr9 12594434 12594594 -129676850 - L2 LINE L2 -2646 668 487 1037 184 8 3 chr9 12594946 12595163 -129676281 + L1MDa LINE L1 2511 2726 -3814 750 201 13 0 chr9 12595268 12595417 -129676027 - FRAM SINE Alu -16 160 10 1040 157 12 0 chr9 12595557 12595723 -129675721 + AluSg/x SINE Alu 130 297 -15 43 56 0 0 chr9 12595911 12595982 -129675462 + AT_rich Low_complexity Low_complexity 1 71 0 284 321 53 8 chr9 12596474 12596605 -129674839 + L2 LINE L2 2468 2604 -710 479 157 25 9 chr9 12596634 12596747 -129674697 - L1MA5 LINE L1 -241 5939 5826 270 278 0 9 chr9 12596694 12596802 -129674642 + L1MA3 LINE L1 6199 6305 0 * 721 272 14 115 chr9 12596813 12597299 -129674145 + LTR16B LTR ERVL 28 464 0 353 320 77 17 chr9 12597305 12597486 -129673958 + L2 LINE L2 2612 2803 -511 360 324 52 0 chr9 12597503 12597639 -129673805 + L2 LINE L2 2940 3082 -231 307 291 82 38 chr9 12598154 12598312 -129673132 + L2 LINE L2 3148 3312 -1 28 29 0 0 chr9 12598455 12598490 -129672954 + AT_rich Low_complexity Low_complexity 1 35 0 25 31 0 0 chr9 12598547 12598579 -129672865 + AT_rich Low_complexity Low_complexity 1 32 0 1952 106 8 0 chr9 12598589 12598853 -129672591 + AluSx SINE Alu 11 276 -36 4423 235 64 21 chr9 12599121 12601559 -129669885 - L1MC2 LINE L1 -9 6615 4086 2180 249 30 43 chr9 12601561 12603183 -129668261 - L1MC2 LINE L1 -4851 1056 7 322 289 122 20 chr9 12603211 12603408 -129668036 + L1M4 LINE L1 4213 4429 -1717 41 93 0 0 chr9 12603749 12603867 -129667577 + AT_rich Low_complexity Low_complexity 1 118 0 22 0 0 30 chr9 12603991 12604010 -129667434 + AT_rich Low_complexity Low_complexity 1 20 -12 2382 78 3 0 chr9 12604010 12604305 -129667139 + AluSp SINE Alu 1 296 -17 22 0 0 30 chr9 12604305 12604318 -129667126 + AT_rich Low_complexity Low_complexity 20 32 0 1376 203 0 4 chr9 12654789 12655030 -129616414 + L1P3 LINE L1 10 249 -6212 2187 111 3 35 chr9 12655194 12655509 -129615935 - AluSx SINE Alu -7 305 1 2288 112 3 0 chr9 12655585 12655890 -129615554 - AluSx SINE Alu -6 306 1 421 181 0 0 chr9 12656221 12656293 -129615151 - FLAM_A SINE Alu -18 124 53 2326 67 0 0 chr9 12656396 12656716 -129614728 + AluY SINE Alu 1 320 0 1317 105 0 28 chr9 12656716 12656897 -129614547 + AluSg/x SINE Alu 132 307 -5 2397 85 3 0 chr9 12658062 12658356 -129613088 - AluSp SINE Alu -16 297 3 2443 94 13 0 chr9 12658532 12658840 -129612604 - AluSx SINE Alu 0 312 1 702 157 0 0 chr9 12659117 12659238 -129612206 - AluSg/x SINE Alu 0 309 189 1548 118 0 5 chr9 12659119 12659339 -129612105 - AluSg/x SINE Alu -2 308 90 208 139 0 0 chr9 12661204 12661240 -129610204 + (TAAAAA)n Simple_repeat Simple_repeat 2 37 0 198 0 0 0 chr9 12661907 12661929 -129609515 + (T)n Simple_repeat Simple_repeat 1 22 0 22 35 0 0 chr9 12662916 12662945 -129608499 + AT_rich Low_complexity Low_complexity 1 29 0 300 315 99 17 chr9 12662961 12663253 -129608191 - L1MC4a LINE L1 -1920 5888 5573 42 0 0 0 chr9 12663539 12663581 -129607863 + AT_rich Low_complexity Low_complexity 1 42 0 856 326 94 15 chr9 12663663 12664377 -129607067 + L1M4 LINE L1 3840 4609 -1537 281 343 62 48 chr9 12664497 12664806 -129606638 + L1MEc LINE L1 92 404 -5992 204 135 0 0 chr9 12664898 12664935 -129606509 + (CCA)n Simple_repeat Simple_repeat 2 38 0 254 322 78 0 chr9 12664970 12665085 -129606359 + L1MEc LINE L1 499 622 -5774 29388 111 13 43 chr9 12666003 12672341 -129599103 - L1PA7 LINE L1 -5 6464 154 303 183 56 14 chr9 12672341 12672412 -129599032 - MER31A LTR ERV1 -332 153 80 29388 111 13 43 chr9 12672412 12672562 -129598882 - L1PA7 LINE L1 -6315 154 1 32 26 0 0 chr9 12672687 12672726 -129598718 + AT_rich Low_complexity Low_complexity 1 39 0 744 222 66 37 chr9 12673185 12673428 -129598016 - MER31A LTR ERV1 -235 250 1 664 249 51 30 chr9 12673429 12673458 -129597986 - MER31A-int LTR ERV1 -21 4915 4888 180 111 0 0 chr9 12673458 12673485 -129597959 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 664 249 51 30 chr9 12673485 12673692 -129597752 - MER31A-int LTR ERV1 -48 4888 4674 269 279 44 0 chr9 12675645 12675713 -129595731 - MER31A-int LTR ERV1 -4674 4245 4175 261 250 69 52 chr9 12676004 12676120 -129595324 - LTR57-int LTR ERVL -3196 2147 2030 24 32 0 0 chr9 12677709 12677740 -129593704 + AT_rich Low_complexity Low_complexity 1 31 0 760 207 89 43 chr9 12677957 12678159 -129593285 - MLT1D LTR MaLR 0 618 335 400 353 115 12 chr9 12678901 12679153 -129592291 + L2 LINE L2 2995 3272 0 278 244 89 49 chr9 12679708 12679831 -129591613 - MIR SINE MIR -115 147 20 22 35 0 0 chr9 12679983 12680012 -129591432 + AT_rich Low_complexity Low_complexity 1 29 0 1042 169 0 12 chr9 12680206 12680378 -129591066 + AluJo SINE Alu 1 170 -142 342 268 41 21 chr9 12680842 12680939 -129590505 - MIR3 SINE MIR -49 159 61 1820 216 36 78 chr9 12681125 12681703 -129589741 - MLT2B3 LTR ERVL 0 554 1 22 35 0 0 chr9 12682197 12682226 -129589218 + AT_rich Low_complexity Low_complexity 1 29 0 2516 127 63 97 chr9 12683844 12684470 -129586974 - MER4B LTR ERV1 0 766 1 530 193 18 18 chr9 12684509 12684623 -129586821 - FLAM_A SINE Alu -11 131 18 1646 162 51 51 chr9 12684643 12684800 -129586644 + MLT1B LTR MaLR 10 166 -224 1710 142 4 4 chr9 12684800 12685060 -129586384 + AluSq SINE Alu 39 298 -15 1646 162 51 51 chr9 12685060 12685253 -129586191 + MLT1B LTR MaLR 165 360 -30 1040 222 143 101 chr9 12685303 12686018 -129585426 + LTR1B LTR ERV1 82 826 0 2197 149 22 3 chr9 12686342 12686712 -129584732 + LTR8A LTR ERV1 1 377 -350 4220 121 49 49 chr9 12686713 12687467 -129583977 - LTR1 LTR ERV1 0 785 32 1201 195 47 58 chr9 12687480 12687824 -129583620 + LTR8A LTR ERV1 375 714 -13 2031 287 51 24 chr9 12688112 12688148 -129583296 + L1ME1 LINE L1 150 184 -6212 318 26 0 0 chr9 12688148 12688187 -129583257 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 2031 287 51 24 chr9 12688187 12688975 -129582469 + L1ME1 LINE L1 184 996 -5400 313 250 81 48 chr9 12688979 12689103 -129582341 - L1MEc LINE L1 -5034 1350 1223 343 218 20 10 chr9 12689113 12689214 -129582230 - L1MEc LINE L1 -5227 1336 1235 258 250 118 80 chr9 12689331 12689847 -129581597 + L1ME1 LINE L1 2898 3433 -2782 951 253 152 62 chr9 12690062 12690247 -129581197 + L1M4 LINE L1 1 168 -6374 3550 179 25 15 chr9 12690247 12690967 -129580477 - LTR8A LTR ERV1 0 727 1 951 253 152 62 chr9 12690967 12691280 -129580164 + L1M4 LINE L1 168 544 -5998 331 248 104 24 chr9 12691287 12691412 -129580032 + MLT1B LTR MaLR 404 538 -4 247 279 185 71 chr9 12691530 12691784 -129579660 + L1ME1 LINE L1 5094 5376 -839 1044 277 66 7 chr9 12691816 12692238 -129579206 + L1ME1 LINE L1 5479 5925 -310 225 128 0 0 chr9 12692954 12693001 -129578443 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 719 185 31 15 chr9 12693219 12693349 -129578095 - FLAM_C SINE Alu -1 132 1 21 36 0 0 chr9 12693390 12693418 -129578026 + AT_rich Low_complexity Low_complexity 1 28 0 4351 197 25 48 chr9 12693424 12694683 -129576761 - L1MA10 LINE L1 -15 6319 5088 2202 211 40 29 chr9 12694680 12695309 -129576135 + L1MA10 LINE L1 4441 5076 -1070 * 2006 90 60 4 chr9 12695526 12695817 -129575627 + AluY SINE Alu 1 306 0 22 35 0 0 chr9 12695953 12695982 -129575462 + AT_rich Low_complexity Low_complexity 1 29 0 2328 138 11 3 chr9 12696041 12696402 -129575042 + THE1B LTR MaLR 1 364 0 10215 123 37 3 chr9 12696403 12697930 -129573514 + THE1B-int LTR MaLR 2 1580 0 1589 144 25 18 chr9 12697930 12698208 -129573236 + THE1B LTR MaLR 1 280 -84 1400 164 0 0 chr9 12698208 12698422 -129573022 + THE1-int LTR MaLR 938 1151 -429 305 414 55 0 chr9 12699586 12699731 -129571713 + L2 LINE L2 3112 3264 -8 369 93 0 0 chr9 12700728 12700782 -129570662 + (GGAA)n Simple_repeat Simple_repeat 3 56 0 1941 169 107 13 chr9 12701393 12701784 -129569660 + MSTA LTR MaLR 1 428 0 761 268 65 0 chr9 12704272 12704533 -129566911 - MER5C DNA MER1_type -43 281 4 1382 269 75 53 chr9 12705533 12706636 -129564808 + L1ME LINE L1 508 1611 -4469 577 308 40 9 chr9 12706816 12707040 -129564404 + LTR16A LTR ERVL 176 406 -44 311 353 43 27 chr9 12707046 12707346 -129564098 + L1ME LINE L1 2271 2575 -3505 1840 175 51 0 chr9 12707363 12707694 -129563750 - MER7A DNA MER2_type 0 346 1 370 188 0 62 chr9 12707694 12707780 -129563664 - L1MC4 LINE L1 -1347 6695 6614 364 265 0 31 chr9 12707699 12707797 -129563647 + L1MC4 LINE L1 6614 6708 -1334 * 402 304 12 70 chr9 12708789 12708960 -129562484 + MER5B DNA MER1_type 1 161 -17 408 258 52 79 chr9 12709238 12709529 -129561915 - L1ME3 LINE L1 -22 6140 5858 33 66 0 0 chr9 12709565 12709626 -129561818 + AT_rich Low_complexity Low_complexity 1 61 0 408 281 131 70 chr9 12709802 12710224 -129561220 + MLT1H LTR MaLR 114 549 -6 21 57 0 0 chr9 12710339 12710374 -129561070 + AT_rich Low_complexity Low_complexity 1 35 0 374 80 0 0 chr9 12711050 12711100 -129560344 + L1P LINE L1 5123 5172 -974 2378 252 10 0 chr9 12711109 12711705 -129559739 + L1 LINE L1 2253 2854 -3292 1302 309 74 24 chr9 12711708 12712332 -129559112 + MER110-int LTR ERV1 2254 2908 -1739 192 40 0 0 chr9 12712544 12712569 -129558875 + (T)n Simple_repeat Simple_repeat 1 25 0 326 313 47 47 chr9 12712582 12712775 -129558669 + MER110-int LTR ERV1 4410 4605 -42 2186 108 3 3 chr9 12712775 12713081 -129558363 + AluSq SINE Alu 1 306 -7 326 313 47 47 chr9 12713081 12713101 -129558343 + MER110-int LTR ERV1 4604 4623 -24 331 350 110 30 chr9 12713211 12713548 -129557896 + L1ME3 LINE L1 5526 5889 -273 328 368 72 13 chr9 12713652 12713804 -129557640 - L2 LINE L2 -239 3074 2914 199 338 76 25 chr9 12713999 12714156 -129557288 + L2 LINE L2 3149 3313 0 216 200 0 0 chr9 12714277 12714322 -129557122 + (CATATA)n Simple_repeat Simple_repeat 6 50 0 204 407 82 21 chr9 12714340 12714583 -129556861 - L2 LINE L2 -89 3183 2926 41 36 0 0 chr9 12714943 12714998 -129556446 + AT_rich Low_complexity Low_complexity 1 55 0 4038 74 0 0 chr9 12715619 12716146 -129555298 - L1PA7 LINE L1 -3 6151 5625 579 360 20 65 chr9 12716281 12716776 -129554668 + L2 LINE L2 237 709 -2605 763 247 150 30 chr9 12716909 12717217 -129554227 - Charlie1a DNA MER1_type -1084 371 27 357 330 101 9 chr9 12717482 12717700 -129553744 + L3 LINE CR1 1155 1392 -185 25 0 0 0 chr9 12718063 12718088 -129553356 + AT_rich Low_complexity Low_complexity 1 25 0 29 67 0 0 chr9 12718965 12719010 -129552434 + AT_rich Low_complexity Low_complexity 1 45 0 369 225 13 40 chr9 12719034 12719185 -129552259 + (TATAA)n Simple_repeat Simple_repeat 2 148 0 56 67 0 0 chr9 12719290 12719395 -129552049 + AT_rich Low_complexity Low_complexity 1 105 0 536 294 74 69 chr9 12719427 12719647 -129551797 + L1MC4 LINE L1 6702 6926 -1116 1605 193 0 6 chr9 12719647 12719969 -129551475 + L1MA6 LINE L1 5981 6300 0 536 294 74 69 chr9 12719969 12720112 -129551332 + L1MC4 LINE L1 6926 7067 -975 314 314 33 19 chr9 12720347 12720557 -129550887 + L1MC4 LINE L1 7690 7902 -140 245 155 17 0 chr9 12720565 12720623 -129550821 + (TAGA)n Simple_repeat Simple_repeat 2 60 0 268 266 51 25 chr9 12720885 12720964 -129550480 + L2 LINE L2 3228 3308 -5 186 393 9 9 chr9 12722722 12722829 -129548615 + L2 LINE L2 2376 2482 -832 1069 219 81 51 chr9 12723120 12723454 -129547990 + MER2 DNA MER2_type 1 344 0 25 0 0 0 chr9 12723691 12723716 -129547728 + AT_rich Low_complexity Low_complexity 1 25 0 2041 141 3 0 chr9 12724965 12725271 -129546173 + AluSp SINE Alu 1 307 -6 1498 212 68 0 chr9 12725920 12726260 -129545184 + MLT1A1 LTR MaLR 1 363 -2 22 0 0 0 chr9 12726410 12726432 -129545012 + AT_rich Low_complexity Low_complexity 1 22 0 8673 46 2 4 chr9 12727190 12729039 -129542405 + L1PA5 LINE L1 4305 6151 -3 188 207 138 0 chr9 12729770 12729828 -129541616 + L2 LINE L2 2686 2751 -563 719 353 74 30 chr9 12731844 12732641 -129538803 + ERVL LTR ERVL 1944 2747 -2249 7062 199 88 24 chr9 12732872 12734426 -129537018 + MER52A LTR ERV1 1 1755 0 3289 206 62 5 chr9 12734461 12735134 -129536310 - MER44D DNA MER2_type 0 605 22 222 37 0 0 chr9 12735806 12735833 -129535611 + (A)n Simple_repeat Simple_repeat 1 27 0 269 345 9 9 chr9 12736416 12736526 -129534918 + ERVL LTR ERVL 5216 5325 -439 207 0 0 0 chr9 12736598 12736621 -129534823 + (TG)n Simple_repeat Simple_repeat 2 24 0 23 33 0 0 chr9 12736622 12736652 -129534792 + AT_rich Low_complexity Low_complexity 1 30 0 9414 210 70 32 chr9 12736673 12739543 -129531901 - L1M LINE L1 -769 5377 2447 27 0 0 0 chr9 12739543 12739570 -129531874 + AT_rich Low_complexity Low_complexity 1 27 0 328 360 23 29 chr9 12739578 12739750 -129531694 - L1M3d LINE L1 -5509 382 212 2903 299 51 29 chr9 12739822 12742278 -129529166 - L1M1 LINE L1 -3873 2278 6 423 301 57 17 chr9 12742310 12742486 -129528958 - LTR33 LTR ERVL -10 511 329 1155 274 95 16 chr9 12742546 12742977 -129528467 + MLT1D LTR MaLR 39 503 -2 21 57 0 0 chr9 12744616 12744651 -129526793 + AT_rich Low_complexity Low_complexity 1 35 0 704 325 54 31 chr9 12744841 12745195 -129526249 + L2 LINE L2 2949 3310 -3 270 297 42 8 chr9 12745499 12745617 -129525827 - L2 LINE L2 -1449 1865 1744 284 62 0 21 chr9 12746015 12746063 -129525381 + (TTTC)n Simple_repeat Simple_repeat 2 48 0 1006 128 12 0 chr9 12746077 12746249 -129525195 + CT-rich Low_complexity Low_complexity 3 176 0 2191 91 0 32 chr9 12746251 12746559 -129524885 - AluSc SINE Alu -10 299 2 25 0 0 0 chr9 12746961 12746986 -129524458 + AT_rich Low_complexity Low_complexity 1 25 0 2490 114 34 42 chr9 12746986 12747458 -129523986 - L1MA3 LINE L1 0 7724 7257 448 123 0 0 chr9 12747458 12747531 -129523913 - L1MA3 LINE L1 -914 6810 6738 5667 179 46 9 chr9 12747547 12748732 -129522712 - L1MA3 LINE L1 -1263 6302 5074 * 15103 175 32 25 chr9 12748728 12751550 -129519894 - L1MA3 LINE L1 -4715 2850 9 215 372 0 0 chr9 12752314 12752408 -129519036 + GA-rich Low_complexity Low_complexity 2 95 0 25 31 0 0 chr9 12752853 12752885 -129518559 + AT_rich Low_complexity Low_complexity 1 32 0 812 106 0 0 chr9 12754390 12754503 -129516941 - L1P LINE L1 -5442 704 592 11327 57 9 1 chr9 12754503 12756718 -129514726 + L1PA5 LINE L1 3932 6154 0 312 280 80 8 chr9 12756794 12756919 -129514525 - MLT1I LTR MaLR -267 142 9 325 360 52 28 chr9 12757389 12757639 -129513805 + L1ME4a LINE L1 5639 5894 -227 669 279 198 13 chr9 12758208 12758769 -129512675 - LTR50 LTR ERVL -42 753 50 21 36 0 0 chr9 12758929 12758957 -129512487 + AT_rich Low_complexity Low_complexity 1 28 0 369 250 0 0 chr9 12759024 12759108 -129512336 - MER94 DNA DNA -39 95 12 2757 186 47 29 chr9 12760008 12760620 -129510824 - L1MD1 LINE L1 -1 6241 5619 32 64 0 13 chr9 12760631 12760657 -129510787 + AT_rich Low_complexity Low_complexity 1 26 -51 252 0 0 0 chr9 12760657 12760685 -129510759 + (CA)n Simple_repeat Simple_repeat 2 29 0 180 0 0 0 chr9 12760684 12760704 -129510740 + (TC)n Simple_repeat Simple_repeat 2 21 0 * 32 64 0 13 chr9 12760685 12760755 -129510689 + AT_rich Low_complexity Low_complexity 26 77 0 703 20 4 0 chr9 12760755 12760852 -129510592 - L1PA4 LINE L1 -3 6152 6053 275 130 19 0 chr9 12760850 12760904 -129510540 + (TA)n Simple_repeat Simple_repeat 1 55 0 360 77 0 0 chr9 12760974 12761026 -129510418 + (TG)n Simple_repeat Simple_repeat 2 53 0 28 29 0 0 chr9 12761738 12761773 -129509671 + AT_rich Low_complexity Low_complexity 1 35 0 231 114 0 0 chr9 12764648 12764683 -129506761 + (TG)n Simple_repeat Simple_repeat 2 36 0 1323 239 28 12 chr9 12764851 12765177 -129506267 - MLT1A1 LTR MaLR -34 331 1 722 197 56 17 chr9 12765185 12765363 -129506081 - L1MD1 LINE L1 -136 6106 5922 4940 255 56 30 chr9 12765377 12767409 -129504035 + L1M4 LINE L1 14 2096 -4550 1933 336 64 15 chr9 12767637 12768429 -129503015 + L1M4b LINE L1 260 1090 -5769 5867 117 9 3 chr9 12768478 12769404 -129502040 - L1PB1 LINE L1 0 6151 5221 1402 261 59 52 chr9 12769405 12770636 -129500808 + L1M4b LINE L1 1185 2418 -4541 4372 28 0 0 chr9 12770974 12771502 -129499942 - L1P LINE L1 -772 5374 4847 822 58 0 0 chr9 12771502 12771598 -129499846 + L1PA3 LINE L1 6050 6152 -3 699 287 37 12 chr9 12771622 12772211 -129499233 + L1M4b LINE L1 2775 3478 -3479 * 1233 252 40 86 chr9 12772207 12772961 -129498483 + L1M4b LINE L1 3831 4549 -2408 1107 261 40 8 chr9 12772968 12773347 -129498097 + L1M4b LINE L1 5074 5464 -1493 * 2112 226 8 8 chr9 12773335 12773867 -129497577 + L1M4b LINE L1 5683 6214 -743 2146 101 23 4 chr9 12773873 12774382 -129497062 + L1PB1 LINE L1 5470 6151 0 2393 228 33 81 chr9 12774395 12774954 -129496490 + L1MB7 LINE L1 4646 5230 -954 2337 82 0 16 chr9 12774954 12775270 -129496174 + AluY SINE Alu 1 311 0 2393 228 33 81 chr9 12775270 12775383 -129496061 + L1MB7 LINE L1 5230 5347 -837 210 37 0 0 chr9 12775383 12775410 -129496034 + (CA)n Simple_repeat Simple_repeat 2 28 0 2393 228 33 81 chr9 12775410 12776352 -129495092 + L1MB7 LINE L1 5347 6184 0 545 265 107 28 chr9 12776344 12776736 -129494708 + L1M4c LINE L1 1921 2343 -4041 * 24 53 0 0 chr9 12776931 12776969 -129494475 + AT_rich Low_complexity Low_complexity 1 38 0 875 213 88 43 chr9 12777054 12777359 -129494085 - L1MC3 LINE L1 -1377 6802 6484 254 177 32 0 chr9 12777367 12777429 -129494015 - HSMAR2 DNA Mariner 0 1302 1239 4154 263 43 10 chr9 12777430 12779579 -129491865 - L1MC3 LINE L1 -743 5797 4135 1160 294 47 18 chr9 12779628 12780009 -129491435 - L1MC3 LINE L1 -5538 1002 611 225 65 0 0 chr9 12780091 12780122 -129491322 + (TG)n Simple_repeat Simple_repeat 2 32 0 304 163 125 12 chr9 12780142 12780222 -129491222 - L1MC3 LINE L1 -6175 365 277 225 108 0 0 chr9 12781030 12781067 -129490377 + (CA)n Simple_repeat Simple_repeat 2 38 0 265 188 38 25 chr9 12781518 12781598 -129489846 + (TTTA)n Simple_repeat Simple_repeat 2 82 0 207 0 0 0 chr9 12783029 12783052 -129488392 + (A)n Simple_repeat Simple_repeat 1 23 0 2371 72 3 28 chr9 12783195 12783514 -129487930 - AluY SINE Alu 0 311 1 219 69 0 0 chr9 12783783 12783812 -129487632 + (CA)n Simple_repeat Simple_repeat 2 30 0 2361 57 0 0 chr9 12784764 12785096 -129486348 + AluY SINE Alu 1 332 0 433 250 133 8 chr9 12785113 12785478 -129485966 + L1MC4 LINE L1 6188 6560 -1248 279 0 0 0 chr9 12785478 12785509 -129485935 + (CA)n Simple_repeat Simple_repeat 2 32 0 433 250 133 8 chr9 12785509 12785553 -129485891 + L1MC4 LINE L1 6560 6597 -1211 899 223 83 9 chr9 12785565 12786035 -129485409 + MER34 LTR ERV1 13 542 0 288 53 0 0 chr9 12786035 12786073 -129485371 + (TG)n Simple_repeat Simple_repeat 2 39 0 254 284 40 0 chr9 12786082 12786156 -129485288 + L1MC4 LINE L1 6743 6819 -1223 * 3912 209 13 23 chr9 12786141 12787131 -129484313 + L1 LINE L1 4154 5133 -1013 3119 251 48 31 chr9 12787126 12788205 -129483239 + L1MC4a LINE L1 6704 7800 -8 * 441 0 0 0 chr9 12788493 12788542 -129482902 + (TCTA)n Simple_repeat Simple_repeat 4 52 0 307 264 203 56 chr9 12789290 12789383 -129482061 + MIR SINE MIR 37 115 -147 252 0 0 0 chr9 12789383 12789411 -129482033 + (TAA)n Simple_repeat Simple_repeat 1 28 0 307 264 203 56 chr9 12789411 12789514 -129481930 + MIR SINE MIR 115 262 0 2294 100 0 0 chr9 12790938 12791238 -129480206 + AluSx SINE Alu 1 300 -12 180 0 0 0 chr9 12791346 12791366 -129480078 + (TG)n Simple_repeat Simple_repeat 2 21 0 231 217 22 0 chr9 12794394 12794440 -129477004 + CT-rich Low_complexity Low_complexity 5 51 0 8729 112 24 2 chr9 12794501 12795637 -129475807 - HSMAR1 DNA Mariner 0 1287 119 270 56 0 0 chr9 12795637 12795673 -129475771 + (CAA)n Simple_repeat Simple_repeat 2 37 0 8729 112 24 2 chr9 12795673 12795792 -129475652 - HSMAR1 DNA Mariner -1168 119 4 234 0 0 0 chr9 12796748 12796774 -129474670 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 810 196 76 73 chr9 12796941 12797216 -129474228 + MLT2D LTR ERVL 1 276 -138 188 103 51 0 chr9 12797459 12797498 -129473946 + CT-rich Low_complexity Low_complexity 3 43 0 2784 179 47 25 chr9 12798659 12799212 -129472232 - Tigger3b DNA MER2_type -666 565 1 1923 93 99 42 chr9 12799278 12799566 -129471878 + MER4D LTR ERV1 1 312 -591 4513 124 27 33 chr9 12799566 12800349 -129471095 - MER4E LTR ERV1 0 779 2 1923 93 99 42 chr9 12800349 12800392 -129471052 + MER4D LTR ERV1 312 351 -552 336 167 31 21 chr9 12800569 12800665 -129470779 + CT-rich Low_complexity Low_complexity 4 100 0 269 255 110 7 chr9 12801561 12801706 -129469738 - MER97b DNA MER1_type? -194 859 700 223 214 56 22 chr9 12802402 12802491 -129468953 + (CCCTG)n Simple_repeat Simple_repeat 5 96 0 720 163 23 0 chr9 12802932 12803061 -129468383 - FLAM_C SINE Alu -1 132 1 467 222 71 0 chr9 12803135 12803261 -129468183 - MER97c DNA MER1_type? -392 698 564 511 294 117 0 chr9 12803315 12803512 -129467932 - MIR SINE MIR -30 232 13 24 0 0 0 chr9 12804210 12804234 -129467210 + AT_rich Low_complexity Low_complexity 1 24 0 850 161 67 0 chr9 12804378 12804571 -129466873 - L1MA8 LINE L1 -2 6289 6084 1720 151 28 16 chr9 12805017 12805334 -129466110 - L1MA8 LINE L1 -185 6106 5786 792 163 101 17 chr9 12805334 12805512 -129465932 - Tigger1 DNA MER2_type 0 2418 2226 21 0 0 0 chr9 12805520 12805541 -129465903 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 12805843 12805864 -129465580 + AT_rich Low_complexity Low_complexity 1 21 0 1962 110 3 43 chr9 12806348 12806647 -129464797 - AluSq SINE Alu -26 287 1 244 316 26 0 chr9 12806848 12806924 -129464520 + MIR3 SINE MIR 85 162 -46 881 322 75 37 chr9 12807271 12807672 -129463772 - LTR16A LTR ERVL -9 441 26 357 357 14 0 chr9 12808262 12808405 -129463039 - LTR16A LTR ERVL 0 450 306 1411 127 4 48 chr9 12808482 12808710 -129462734 - AluSg/x SINE Alu -20 292 75 27 0 0 0 chr9 12809066 12809093 -129462351 + AT_rich Low_complexity Low_complexity 1 27 0 324 312 48 24 chr9 12809412 12809537 -129461907 - MIR SINE MIR -115 147 20 1310 185 4 0 chr9 12809537 12809775 -129461669 + L1MA7 LINE L1 5681 5919 -372 1571 177 52 33 chr9 12809782 12810149 -129461295 + THE1C LTR MaLR 1 374 -1 8188 154 39 36 chr9 12810157 12811627 -129459817 + THE1C-int LTR MaLR 3 1476 -104 221 56 0 28 chr9 12811627 12811663 -129459781 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 7365 29 1 1 chr9 12811663 12813243 -129458201 - L1PA3 LINE L1 -24 6131 4552 531 106 15 121 chr9 12813236 12813307 -129458137 + THE1C-int LTR MaLR 1463 1515 -65 * 1609 115 0 21 chr9 12813307 12813542 -129457902 - AluSg/x SINE Alu -4 308 79 531 106 15 121 chr9 12813542 12813602 -129457842 + THE1C-int LTR MaLR 1515 1580 0 1717 158 65 14 chr9 12813604 12813959 -129457485 + THE1C LTR MaLR 3 375 0 1575 193 40 0 chr9 12813959 12814311 -129457133 + L1MA7 LINE L1 5924 6289 -2 2163 124 0 0 chr9 12814461 12814759 -129456685 + AluSq SINE Alu 1 298 -15 2169 112 0 3 chr9 12815688 12815992 -129455452 + AluSg SINE Alu 5 307 -3 262 267 130 74 chr9 12816519 12816789 -129454655 - L1ME3 LINE L1 -150 6081 5797 266 237 96 59 chr9 12817105 12817240 -129454204 + MLT1H LTR MaLR 410 549 0 744 278 101 9 chr9 12817265 12817611 -129453833 - L1ME3 LINE L1 -470 5761 5384 14680 57 2 2 chr9 12817615 12820271 -129451173 - L1PA5 LINE L1 -13 6141 3486 2668 68 0 0 chr9 12820272 12820641 -129450803 + L1P LINE L1 3061 3429 -2717 * 21642 66 7 5 chr9 12820636 12823983 -129447461 - L1PA5 LINE L1 -322 5832 2479 1651 186 27 0 chr9 12824358 12824654 -129446790 - AluJb SINE Alu -8 304 1 1083 303 99 19 chr9 12825006 12826068 -129445376 - L1ME3 LINE L1 -1828 4387 3241 * 1797 289 69 47 chr9 12826065 12827454 -129443990 - L1ME3 LINE L1 -3950 2446 1027 1459 310 67 24 chr9 12827500 12828314 -129443130 - L1ME3 LINE L1 -5449 947 91 4759 43 2 0 chr9 12828314 12828896 -129442548 - L1PA5 LINE L1 -1 6153 5571 1459 310 67 24 chr9 12828896 12828956 -129442488 - L1ME3 LINE L1 -6305 91 35 830 348 81 3 chr9 12829307 12829666 -129441778 - L1MEc LINE L1 -5876 520 134 21 89 0 0 chr9 12829666 12829722 -129441722 + AT_rich Low_complexity Low_complexity 1 56 0 245 132 0 94 chr9 12829763 12829816 -129441628 - L1MEc LINE L1 -6294 102 55 369 291 163 26 chr9 12829839 12830639 -129440805 - L1MEc LINE L1 -3174 3041 2171 209 191 22 45 chr9 12830668 12830757 -129440687 + T-rich Low_complexity Low_complexity 6 92 0 197 383 8 17 chr9 12831639 12831759 -129439685 - L2 LINE L2 -925 2389 2271 2081 107 14 0 chr9 12832195 12832484 -129438960 - AluSc SINE Alu -16 293 1 30 0 0 0 chr9 12834651 12834681 -129436763 + AT_rich Low_complexity Low_complexity 1 30 0 266 241 46 0 chr9 12835189 12835276 -129436168 - MER58 DNA MER1_type -224 117 27 216 0 0 0 chr9 12837463 12837487 -129433957 + (TG)n Simple_repeat Simple_repeat 2 25 0 3106 188 29 9 chr9 12838249 12838905 -129432539 - L1MB1 LINE L1 -9 6159 5491 31 88 0 0 chr9 12839411 12839491 -129431953 + AT_rich Low_complexity Low_complexity 1 80 0 793 289 46 18 chr9 12840931 12841211 -129430233 - MLT1G LTR MaLR 0 590 303 185 255 43 0 chr9 12841876 12841923 -129429521 - L2 LINE L2 -5 3267 3219 183 42 0 0 chr9 12841988 12842012 -129429432 + (CA)n Simple_repeat Simple_repeat 1 24 0 349 191 22 38 chr9 12842152 12842335 -129429109 + (TA)n Simple_repeat Simple_repeat 1 180 0 1827 170 3 13 chr9 12842412 12842723 -129428721 + AluSx SINE Alu 3 310 -2 2849 268 55 51 chr9 12843094 12843323 -129428121 + L1M4 LINE L1 33 259 -6283 2101 125 0 13 chr9 12843323 12843635 -129427809 + AluSq SINE Alu 1 308 -5 2849 268 55 51 chr9 12843635 12844549 -129426895 + L1M4 LINE L1 259 1181 -5361 303 192 20 50 chr9 12844550 12844649 -129426795 + (TATATG)n Simple_repeat Simple_repeat 6 101 0 263 165 35 41 chr9 12844663 12844833 -129426611 + (TA)n Simple_repeat Simple_repeat 1 169 0 10962 234 35 16 chr9 12844910 12848826 -129422618 - L1M2 LINE L1 -522 7209 3213 22 66 0 40 chr9 12848831 12848907 -129422537 + AT_rich Low_complexity Low_complexity 1 73 0 28373 40 2 0 chr9 12848913 12853222 -129418222 - L1PA3 LINE L1 -11 6144 1827 1220 257 18 33 chr9 12853218 12853698 -129417746 - L1M2 LINE L1 -4166 3400 2728 * 10300 228 53 49 chr9 12853712 12854279 -129417165 - L1MA6 LINE L1 0 7719 7156 198 0 0 0 chr9 12854279 12854301 -129417143 + (TA)n Simple_repeat Simple_repeat 1 22 0 10300 228 53 49 chr9 12854301 12856450 -129414994 - L1MA6 LINE L1 -563 7156 5019 1539 202 121 5 chr9 12856450 12856831 -129414613 + MSTB LTR MaLR 1 425 -1 10300 228 53 49 chr9 12856831 12859350 -129412094 - L1MA6 LINE L1 -2700 5019 2527 243 253 13 27 chr9 12859700 12859775 -129411669 - MIR SINE MIR -110 152 79 261 320 40 58 chr9 12861235 12861397 -129410047 + MIR SINE MIR 37 188 -67 1935 67 0 0 chr9 12862021 12862259 -129409185 + AluY SINE Alu 1 238 -73 2120 217 50 9 chr9 12862259 12862896 -129408548 - L1 LINE L1 -2606 3540 2140 1297 251 109 7 chr9 12862975 12863378 -129408066 + L1 LINE L1 2420 2863 -3283 251 29 59 0 chr9 12863384 12863418 -129408026 + L1PA3 LINE L1 4206 4241 -1905 6772 113 18 10 chr9 12863421 12865070 -129406374 + L1PA3 LINE L1 4517 6181 0 755 198 78 5 chr9 12865070 12865262 -129406182 + L1MC4 LINE L1 7697 7902 -140 1260 96 0 0 chr9 12865279 12865445 -129405999 + AluSq SINE Alu 40 205 -108 29 47 0 0 chr9 12865466 12865509 -129405935 + AT_rich Low_complexity Low_complexity 1 43 0 277 240 0 0 chr9 12865509 12865559 -129405885 + L2 LINE L2 3256 3305 -8 345 239 19 31 chr9 12865822 12865981 -129405463 + (TA)n Simple_repeat Simple_repeat 2 158 0 21 0 0 0 chr9 12867249 12867270 -129404174 + AT_rich Low_complexity Low_complexity 1 21 0 334 351 154 10 chr9 12867451 12867659 -129403785 - MIR SINE MIR -11 251 14 192 333 56 42 chr9 12868198 12868342 -129403102 + MIR SINE MIR 1 146 -116 241 356 48 14 chr9 12868739 12868885 -129402559 + MIR SINE MIR 20 170 -92 242 217 17 0 chr9 12868925 12868985 -129402459 + (CAT)n Simple_repeat Simple_repeat 2 62 0 22 0 0 0 chr9 12869387 12869409 -129402035 + AT_rich Low_complexity Low_complexity 1 22 0 396 206 28 37 chr9 12870849 12870956 -129400488 - FLAM_A SINE Alu -8 125 20 1491 219 0 0 chr9 12871347 12871626 -129399818 + AluJb SINE Alu 2 280 -32 784 117 7 7 chr9 12871628 12871765 -129399679 + (GGAA)n Simple_repeat Simple_repeat 2 138 0 629 191 30 6 chr9 12871804 12871972 -129399472 + GA-rich Low_complexity Low_complexity 1 172 0 1997 110 21 27 chr9 12874569 12874897 -129396547 + L1PA13 LINE L1 5835 6160 -3 1492 203 13 19 chr9 12875029 12875340 -129396104 + AluJo SINE Alu 1 309 -3 222 111 44 22 chr9 12875757 12875802 -129395642 + A-rich Low_complexity Low_complexity 2 47 0 251 191 16 0 chr9 12875880 12875943 -129395501 + GA-rich Low_complexity Low_complexity 3 66 0 478 113 0 0 chr9 12876464 12876526 -129394918 - MER8 DNA MER2_type -4 235 174 2243 158 49 7 chr9 12876530 12876940 -129394504 + Tigger2 DNA MER2_type 2292 2718 0 423 0 0 0 chr9 12879046 12879093 -129392351 + (CA)n Simple_repeat Simple_repeat 2 48 0 204 67 0 0 chr9 12879670 12879700 -129391744 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 2059 116 0 0 chr9 12879704 12879979 -129391465 - AluSg SINE Alu -35 275 1 1426 281 50 88 chr9 12879979 12881549 -129389895 - L1PA12 LINE L1 -4978 2603 9 329 300 61 70 chr9 12881558 12881788 -129389656 + HAL1 LINE L1 1351 1578 -929 193 296 0 0 chr9 12881789 12881833 -129389611 + MIR SINE MIR 80 123 -139 1365 194 18 37 chr9 12882551 12882824 -129388620 + AluJb SINE Alu 1 268 -44 196 30 61 0 chr9 12882834 12882867 -129388577 + (TAA)n Simple_repeat Simple_repeat 2 36 0 25 0 0 0 chr9 12883194 12883219 -129388225 + AT_rich Low_complexity Low_complexity 1 25 0 1721 147 4 0 chr9 12883396 12883648 -129387796 + AluSx SINE Alu 7 259 -53 272 371 18 24 chr9 12883760 12883927 -129387517 - Zaphod DNA AcHobo -3857 174 9 2273 84 0 3 chr9 12885027 12885324 -129386120 - AluY SINE Alu -15 296 1 34 65 0 0 chr9 12885452 12885514 -129385930 + AT_rich Low_complexity Low_complexity 1 62 0 261 309 53 32 chr9 12885994 12886088 -129385356 + MIR3 SINE MIR 10 105 -103 1508 134 9 0 chr9 12887268 12887491 -129383953 - AluSq SINE Alu -84 229 5 242 246 138 82 chr9 12887899 12887946 -129383498 - MIR SINE MIR -49 213 170 1821 143 50 61 chr9 12887946 12888325 -129383119 - THE1C LTR MaLR 0 375 1 242 246 138 82 chr9 12888325 12888472 -129382972 - MIR SINE MIR -92 170 8 2304 98 10 0 chr9 12888783 12889089 -129382355 + AluY SINE Alu 1 309 -2 200 321 18 37 chr9 12889133 12889242 -129382202 + L2 LINE L2 2292 2398 -916 224 319 112 26 chr9 12890063 12890179 -129381265 + L2 LINE L2 3184 3309 -4 198 0 0 0 chr9 12893124 12893146 -129378298 + (TA)n Simple_repeat Simple_repeat 1 22 0 315 0 0 0 chr9 12893483 12893518 -129377926 + (CA)n Simple_repeat Simple_repeat 2 36 0 255 31 0 0 chr9 12893523 12893555 -129377889 + (TA)n Simple_repeat Simple_repeat 2 33 0 276 336 19 19 chr9 12894220 12894324 -129377120 - MIR SINE MIR -63 145 42 294 222 11 78 chr9 12896466 12896556 -129374888 + MIR3 SINE MIR 119 202 -6 2054 224 50 47 chr9 12896586 12896956 -129374488 - MER92B LTR ERV1 0 636 262 1713 193 21 19 chr9 12896956 12897330 -129374114 + THE1C LTR MaLR 1 375 0 2054 224 50 47 chr9 12897330 12897593 -129373851 - MER92B LTR ERV1 -374 262 1 402 21 0 0 chr9 12897881 12897928 -129373516 + (TG)n Simple_repeat Simple_repeat 2 48 0 327 49 0 0 chr9 12897966 12898007 -129373437 + (TG)n Simple_repeat Simple_repeat 2 42 0 215 205 0 0 chr9 12898297 12898336 -129373108 + (CA)n Simple_repeat Simple_repeat 2 40 0 41 58 0 0 chr9 12898872 12898941 -129372503 + AT_rich Low_complexity Low_complexity 1 69 0 3780 138 26 5 chr9 12899079 12899701 -129371743 + MER41B LTR ERV1 1 635 0 210 333 48 0 chr9 12899710 12899773 -129371671 + MIR SINE MIR 24 89 -173 22 0 0 0 chr9 12899776 12899798 -129371646 + AT_rich Low_complexity Low_complexity 1 22 0 1963 134 10 26 chr9 12899804 12900111 -129371333 + AluSx SINE Alu 1 302 -10 251 273 15 0 chr9 12900197 12900263 -129371181 - MER67D LTR ERV1 -8 506 440 3940 135 21 6 chr9 12900264 12900899 -129370545 - MER39B LTR ERV1 0 630 1 228 298 0 71 chr9 12900899 12900977 -129370467 - MER67D LTR ERV1 -87 427 356 1330 180 38 64 chr9 12900988 12901368 -129370076 - MER67C LTR ERV1 -271 243 1 183 256 0 0 chr9 12901577 12901616 -129369828 + MIR SINE MIR 203 241 -21 257 282 122 35 chr9 12903798 12904025 -129367419 - L1M2 LINE L1 -570 5584 5392 1702 227 78 49 chr9 12904526 12905348 -129366096 - L1MDa LINE L1 -3922 2618 1763 384 22 0 0 chr9 12905985 12906030 -129365414 + (TA)n Simple_repeat Simple_repeat 1 45 0 279 221 11 21 chr9 12906105 12906200 -129365244 + (TA)n Simple_repeat Simple_repeat 1 94 0 939 275 67 11 chr9 12906208 12906657 -129364787 - MLT1H LTR MaLR -24 525 12 273 210 8 48 chr9 12906679 12906803 -129364641 + T-rich Low_complexity Low_complexity 4 122 0 21 0 0 0 chr9 12907343 12907364 -129364080 + AT_rich Low_complexity Low_complexity 1 21 0 1245 238 83 17 chr9 12907949 12908298 -129363146 + L1MC2 LINE L1 5952 6323 -21 328 286 24 18 chr9 12908308 12908476 -129362968 - Charlie5 DNA MER1_type -1933 679 511 454 248 145 21 chr9 12909882 12910164 -129361280 - Charlie4a DNA MER1_type -7 501 185 390 318 31 8 chr9 12910663 12910792 -129360652 - L2 LINE L2 -2 3270 3139 745 183 12 24 chr9 12911465 12911629 -129359815 + AluSg/x SINE Alu 119 280 -32 22 0 0 0 chr9 12912047 12912069 -129359375 + AT_rich Low_complexity Low_complexity 1 22 0 1569 218 76 51 chr9 12913456 12913906 -129357538 + MLT1C LTR MaLR 7 467 0 24 0 0 0 chr9 12914105 12914129 -129357315 + AT_rich Low_complexity Low_complexity 1 24 0 1246 203 88 30 chr9 12914719 12915049 -129356395 + THE1C LTR MaLR 1 349 -26 24 32 0 0 chr9 12915075 12915106 -129356338 + AT_rich Low_complexity Low_complexity 1 31 0 576 261 67 75 chr9 12915540 12915793 -129355651 - AluJo SINE Alu -23 289 39 1002 313 40 13 chr9 12915810 12916353 -129355091 - L1 LINE L1 -3125 3021 2464 906 182 42 42 chr9 12916866 12917058 -129354386 - AluJb SINE Alu -11 301 110 3629 173 50 8 chr9 12917059 12917408 -129354036 - L1MA8 LINE L1 -324 5967 5634 234 0 0 0 chr9 12917408 12917434 -129354010 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 3629 173 50 8 chr9 12917434 12918150 -129353294 - L1MA8 LINE L1 -657 5634 4857 279 321 27 27 chr9 12918271 12918458 -129352986 - L1 LINE L1 -3324 2822 2636 540 303 27 90 chr9 12918531 12918782 -129352662 + L1M4 LINE L1 13 221 -6321 1618 140 0 0 chr9 12918782 12919060 -129352384 + AluYa5 SINE Alu 28 305 -6 540 303 27 90 chr9 12919060 12919286 -129352158 + L1M4 LINE L1 221 460 -6082 1582 206 57 40 chr9 12919585 12919988 -129351456 + MER77 LTR ERV1 196 605 0 409 242 8 32 chr9 12920723 12920847 -129350597 - L1M4 LINE L1 -6420 122 2 2181 269 79 24 chr9 12920900 12922025 -129349419 + L1M4 LINE L1 3125 4311 -2333 678 80 0 10 chr9 12922798 12922898 -129348546 + AluY SINE Alu 195 293 -18 234 227 21 10 chr9 12922935 12923032 -129348412 + (TA)n Simple_repeat Simple_repeat 2 99 0 1125 255 35 22 chr9 12924599 12924917 -129346527 + Charlie1b DNA MER1_type 1 322 -201 291 243 40 0 chr9 12924998 12925072 -129346372 + Charlie1b DNA MER1_type 442 518 -5 23 54 0 0 chr9 12925649 12925686 -129345758 + AT_rich Low_complexity Low_complexity 1 37 0 27 49 0 0 chr9 12925753 12925794 -129345650 + AT_rich Low_complexity Low_complexity 1 41 0 196 326 43 22 chr9 12927035 12927127 -129344317 + MIR SINE MIR 58 151 -57 1185 188 87 7 chr9 12927444 12927720 -129343724 - L1MC/D LINE L1 -600 5733 5436 671 192 150 21 chr9 12927795 12927917 -129343527 - L1MA4 LINE L1 -15 6285 6180 1826 153 17 3 chr9 12927917 12928218 -129343226 - AluSx SINE Alu -7 305 1 671 192 150 21 chr9 12928218 12928288 -129343156 - L1MA4 LINE L1 -120 6180 6068 1061 256 37 48 chr9 12928293 12928886 -129342558 - L1MC/D LINE L1 -743 5403 4811 368 244 53 0 chr9 12928886 12929017 -129342427 - L1MA7 LINE L1 -2 6289 4791 12201 42 2 2 chr9 12929445 12930977 -129340467 - L1P LINE L1 -1090 5056 3525 540 232 76 35 chr9 12930977 12931175 -129340269 + L1MC4 LINE L1 7697 7902 -140 226 118 0 0 chr9 12931192 12931226 -129340218 + AluJo SINE Alu 40 73 -230 2728 33 0 0 chr9 12931229 12931560 -129339884 + L1P LINE L1 2696 3026 -3120 559 228 146 67 chr9 12931544 12931798 -129339646 - L1MC4 LINE L1 -323 7719 7446 * 388 207 0 0 chr9 12931818 12931905 -129339539 - L1MA5 LINE L1 -12 6288 6202 1422 183 71 13 chr9 12931905 12932385 -129339059 + L1M1 LINE L1 5100 5603 -697 358 261 23 39 chr9 12932407 12932537 -129338907 - MIR SINE MIR -68 194 67 3375 148 74 5 chr9 12933773 12934383 -129337061 - MER39B LTR ERV1 0 653 2 1380 318 110 58 chr9 12934994 12935836 -129335608 + L1ME3A LINE L1 857 1654 -4909 1914 141 0 7 chr9 12935836 12936120 -129335324 + AluSx SINE Alu 2 283 -29 324 0 0 0 chr9 12936127 12936163 -129335281 + (TAA)n Simple_repeat Simple_repeat 2 37 0 1380 318 110 58 chr9 12936163 12936684 -129334760 + L1ME3A LINE L1 1659 2463 -4100 198 0 0 0 chr9 12936819 12936841 -129334603 + (CA)n Simple_repeat Simple_repeat 2 23 0 604 354 42 20 chr9 12937560 12938033 -129333411 + L1ME3A LINE L1 5622 6117 -289 1177 182 19 0 chr9 12938320 12938529 -129332915 + AluJo SINE Alu 83 295 -17 255 259 74 0 chr9 12938533 12938614 -129332830 - L1MC4 LINE L1 -1342 6700 6614 254 302 23 0 chr9 12938541 12938627 -129332817 + L1MC4 LINE L1 6615 6702 -1340 * 298 235 47 0 chr9 12938628 12938713 -129332731 + L1MC4 LINE L1 6614 6702 -1340 240 226 38 0 chr9 12938725 12938778 -129332666 + GA-rich Low_complexity Low_complexity 2 56 0 2327 195 13 7 chr9 12939233 12939689 -129331755 + MER65C LTR ERV1 3 461 0 205 146 42 0 chr9 12939743 12939791 -129331653 + (TA)n Simple_repeat Simple_repeat 2 51 0 319 193 0 0 chr9 12940981 12941038 -129330406 + AluS SINE Alu 1 57 -242 316 260 0 60 chr9 12941043 12941193 -129330251 - L1MC4 LINE L1 -1338 6704 6614 497 218 6 0 chr9 12941197 12941367 -129330077 + (TA)n Simple_repeat Simple_repeat 2 172 0 32 0 0 0 chr9 12941370 12941402 -129330042 + AT_rich Low_complexity Low_complexity 1 32 0 334 178 22 0 chr9 12941548 12941638 -129329806 + GA-rich Low_complexity Low_complexity 3 94 0 759 157 36 0 chr9 12941677 12941843 -129329601 + GA-rich Low_complexity Low_complexity 1 172 0 326 209 0 81 chr9 12941945 12942031 -129329413 + HsTC2 DNA Tc2 1 79 -1819 191 305 106 57 chr9 12942137 12942278 -129329166 + MIR SINE MIR 9 156 -106 225 0 0 0 chr9 12942803 12942828 -129328616 + (TTA)n Simple_repeat Simple_repeat 3 27 0 2625 38 0 3 chr9 12942828 12943145 -129328299 - L1PA3 LINE L1 -18 6137 5822 4405 24 1 0 chr9 12943145 12943716 -129327728 + L1P1 LINE L1 4860 5431 -724 300 352 28 11 chr9 12943747 12943923 -129327521 + L2 LINE L2 1303 1481 -1833 338 304 89 0 chr9 12944307 12944442 -129327002 - MLT1J1 LTR MaLR -299 147 1 781 335 67 61 chr9 12944442 12945161 -129326283 - L2 LINE L2 -2591 723 1 337 109 91 0 chr9 12945497 12945552 -129325892 + L1PA12 LINE L1 2535 2594 -4987 8499 140 19 9 chr9 12945562 12947783 -129323661 - L1PA10 LINE L1 -11 6157 3962 2255 103 0 7 chr9 12947783 12948085 -129323359 - AluSg SINE Alu -10 300 1 8499 140 19 9 chr9 12948085 12948148 -129323296 - L1PA10 LINE L1 -2206 3962 3901 516 330 161 43 chr9 12948164 12948999 -129322445 + L2 LINE L2 1851 2783 -531 240 307 69 63 chr9 12949245 12949434 -129322010 + L2 LINE L2 3082 3271 -42 522 0 0 0 chr9 12950174 12950232 -129321212 + (TA)n Simple_repeat Simple_repeat 2 59 0 1681 140 52 55 chr9 12950695 12951060 -129320384 + THE1B LTR MaLR 1 364 0 23 68 0 0 chr9 12951417 12951461 -129319983 + AT_rich Low_complexity Low_complexity 1 44 0 24 53 0 0 chr9 12951957 12951995 -129319449 + AT_rich Low_complexity Low_complexity 1 38 0 1788 239 46 5 chr9 12952074 12952513 -129318931 + MER74C LTR ERVL 4 460 0 527 232 43 23 chr9 12952612 12952817 -129318627 - MER61D LTR ERV1 -17 744 340 633 299 35 44 chr9 12953190 12953745 -129317699 - MER51-int LTR ERV1 -1 8254 6776 302 200 0 0 chr9 12953886 12953941 -129317503 - MER51-int LTR ERV1 -274 7542 7488 1356 251 62 6 chr9 12954296 12954619 -129316825 - MER51-int LTR ERV1 -3671 3420 3080 243 103 0 0 chr9 12955576 12955615 -129315829 + (TTCC)n Simple_repeat Simple_repeat 1 39 0 254 250 0 0 chr9 12955616 12955672 -129315772 + CT-rich Low_complexity Low_complexity 2 57 0 426 20 0 0 chr9 12955672 12955723 -129315721 + (CA)n Simple_repeat Simple_repeat 1 51 0 44 84 0 0 chr9 12957275 12957382 -129314062 + AT_rich Low_complexity Low_complexity 1 107 0 21 82 0 0 chr9 12957724 12957773 -129313671 + AT_rich Low_complexity Low_complexity 1 49 0 270 116 0 0 chr9 12957983 12958026 -129313418 + (TATATG)n Simple_repeat Simple_repeat 6 48 0 1704 322 111 20 chr9 12958434 12959371 -129312073 - L2 LINE L2 -353 2961 1940 225 403 42 21 chr9 12959547 12959738 -129311706 - MIR SINE MIR -2 260 66 384 323 31 8 chr9 12959945 12960075 -129311369 + L2 LINE L2 3139 3271 -1 254 306 83 9 chr9 12960514 12960622 -129310822 + L1MDb LINE L1 142 257 -6286 29225 43 2 1 chr9 12960667 12965105 -129306339 + L1PA4 LINE L1 1714 6155 0 1585 216 118 60 chr9 12965102 12965832 -129305612 + L1MDb LINE L1 1180 1951 -4589 * 21 57 0 0 chr9 12965871 12965906 -129305538 + AT_rich Low_complexity Low_complexity 1 35 0 24 53 0 0 chr9 12965976 12966014 -129305430 + AT_rich Low_complexity Low_complexity 1 38 0 24 53 0 0 chr9 12966082 12966120 -129305324 + AT_rich Low_complexity Low_complexity 1 38 0 330 343 50 22 chr9 12966359 12966540 -129304904 + MIR SINE MIR 46 231 -31 833 190 80 6 chr9 12968489 12968652 -129302792 - FAM SINE Alu 0 175 1 21 0 0 0 chr9 12969891 12969912 -129301532 + AT_rich Low_complexity Low_complexity 1 21 0 273 210 8 48 chr9 12970452 12970576 -129300868 + A-rich Low_complexity Low_complexity 4 122 0 957 283 84 10 chr9 12970598 12970909 -129300535 + MLT1H LTR MaLR 12 345 -204 233 237 0 0 chr9 12971053 12971112 -129300332 - L1MC4 LINE L1 -1344 6698 6640 * 264 169 34 0 chr9 12971060 12971119 -129300325 + L1MC4 LINE L1 6640 6700 -1342 240 86 0 0 chr9 12971169 12971204 -129300240 + (CA)n Simple_repeat Simple_repeat 2 36 0 366 274 112 45 chr9 12971558 12971737 -129299707 + LTR67 LTR ERVL 367 557 0 261 277 80 62 chr9 12972113 12972225 -129299219 + L2 LINE L2 3199 3312 -1 342 0 0 0 chr9 12972320 12972358 -129299086 + (CA)n Simple_repeat Simple_repeat 2 39 0 3732 166 20 22 chr9 12973627 12974369 -129297075 - L1MA4 LINE L1 -13 6287 5547 22 0 0 0 chr9 12974505 12974527 -129296917 + AT_rich Low_complexity Low_complexity 1 22 0 8404 159 15 2 chr9 12975225 12976637 -129294807 - Tigger1 DNA MER2_type 0 2418 989 388 346 62 44 chr9 12976733 12977054 -129294390 + MLT1H LTR MaLR 17 343 -206 29 0 0 0 chr9 12977339 12977368 -129294076 + AT_rich Low_complexity Low_complexity 1 29 0 302 365 161 19 chr9 12977642 12977853 -129293591 - MIR SINE MIR -12 250 10 194 337 60 12 chr9 12978468 12978551 -129292893 + MIR SINE MIR 26 112 -150 25 31 0 0 chr9 12979081 12979113 -129292331 + AT_rich Low_complexity Low_complexity 1 32 0 441 36 0 0 chr9 12980843 12980898 -129290546 + (CA)n Simple_repeat Simple_repeat 2 56 0 744 134 0 0 chr9 12980912 12981024 -129290420 - AluSg/x SINE Alu -17 295 184 2018 137 0 0 chr9 12981718 12982011 -129289433 + AluSg SINE Alu 1 293 -17 438 53 0 0 chr9 12982028 12982085 -129289359 + (TG)n Simple_repeat Simple_repeat 2 58 0 1363 127 0 19 chr9 12983724 12983929 -129287515 - AluSg/x SINE Alu -20 292 92 9783 190 28 74 chr9 12984486 12985044 -129286400 + L1MA5 LINE L1 2464 3046 -3254 801 242 68 57 chr9 12985044 12985292 -129286152 + AluJo SINE Alu 39 289 -23 9783 190 28 74 chr9 12985292 12988168 -129283276 + L1MA5 LINE L1 3046 5944 -356 2044 109 0 7 chr9 12988168 12988461 -129282983 + AluSx SINE Alu 1 291 -21 9783 190 28 74 chr9 12988461 12988803 -129282641 + L1MA5 LINE L1 5944 6300 0 218 366 128 26 chr9 12988865 12989092 -129282352 + L2 LINE L2 1459 1708 -1606 325 197 23 3 chr9 12989340 12989416 -129282028 + MSTA LTR MaLR 1 78 -354 3771 195 30 62 chr9 12989639 12990833 -129280611 + L1PA13 LINE L1 1540 2728 -4069 3297 149 2 23 chr9 12990845 12991163 -129280281 + L1PA15 LINE L1 5594 5896 -269 2128 123 3 0 chr9 12991163 12991472 -129279972 + AluSg SINE Alu 1 310 0 3297 149 2 23 chr9 12991472 12991715 -129279729 + L1PA15 LINE L1 5896 6143 -22 27 49 0 0 chr9 12992539 12992580 -129278864 + AT_rich Low_complexity Low_complexity 1 41 0 24 0 0 0 chr9 12993406 12993430 -129278014 + AT_rich Low_complexity Low_complexity 1 24 0 1629 203 76 51 chr9 12993629 12994077 -129277367 - MLT1C LTR MaLR 0 467 9 454 254 104 67 chr9 12994314 12994660 -129276784 + LTR37A LTR ERV1 22 380 -46 582 311 28 6 chr9 12994660 12994840 -129276604 + L1MA8 LINE L1 375 558 -6095 * 1441 233 81 3 chr9 12994827 12995149 -129276295 + L1MA8 LINE L1 1134 1480 -5173 10728 208 26 22 chr9 12995154 12996824 -129274620 + L1MA8 LINE L1 3240 4903 -1974 7810 16 0 0 chr9 12996824 12997915 -129273529 + L1PA2 LINE L1 5062 6152 -3 2068 133 13 0 chr9 12997923 12998224 -129273220 + AluSx SINE Alu 1 305 -7 10728 208 26 22 chr9 12998224 13000291 -129271153 + L1MA8 LINE L1 4909 6874 -3 241 172 47 31 chr9 13000294 13000358 -129271086 + L1MA7 LINE L1 5993 6057 -234 715 161 65 11 chr9 13000359 13000545 -129270899 + L1MA7 LINE L1 6095 6290 -1 496 294 19 102 chr9 13000899 13001164 -129270280 - MIR SINE MIR -6 256 14 22 0 0 0 chr9 13002575 13002597 -129268847 + AT_rich Low_complexity Low_complexity 1 22 0 3864 180 42 45 chr9 13002640 13003267 -129268177 - L1MC1 LINE L1 0 6333 5708 1986 154 0 0 chr9 13003267 13003559 -129267885 - AluSx SINE Alu -20 292 1 3864 180 42 45 chr9 13003559 13003832 -129267612 - L1MC1 LINE L1 -625 5708 5436 714 181 150 21 chr9 13003907 13004029 -129267415 - L1MA4 LINE L1 -15 6285 6180 2107 120 17 3 chr9 13004029 13004330 -129267114 - AluSx SINE Alu -7 305 1 714 181 150 21 chr9 13004330 13004400 -129267044 - L1MA4 LINE L1 -120 6180 6068 1448 246 25 21 chr9 13004405 13004987 -129266457 - L1MC1 LINE L1 -743 5403 4857 405 221 53 0 chr9 13004992 13005123 -129266321 - L1MA7 LINE L1 -2 6289 6152 2368 288 11 34 chr9 13005167 13006365 -129265079 + L1PA13 LINE L1 1 1686 -5101 798 265 35 3 chr9 13006365 13006652 -129264792 - L1MC1 LINE L1 -3719 2427 2132 258 376 73 28 chr9 13007641 13008135 -129263309 + L2 LINE L2 1978 2493 -821 300 351 60 66 chr9 13008302 13008815 -129262629 + L2 LINE L2 2804 3313 0 31 76 0 0 chr9 13009023 13009089 -129262355 + AT_rich Low_complexity Low_complexity 1 66 0 33 25 0 0 chr9 13009147 13009187 -129262257 + AT_rich Low_complexity Low_complexity 1 40 0 25 31 0 0 chr9 13009438 13009470 -129261974 + AT_rich Low_complexity Low_complexity 1 32 0 296 346 69 20 chr9 13009813 13010163 -129261281 + L1ME LINE L1 5362 5728 -393 294 95 0 0 chr9 13013098 13013140 -129258304 + (CA)n Simple_repeat Simple_repeat 1 42 0 258 268 84 26 chr9 13013445 13013635 -129257809 - HAL1 LINE L1 -61 2446 2246 50 18 0 0 chr9 13014761 13014818 -129256626 + AT_rich Low_complexity Low_complexity 1 57 0 243 224 20 10 chr9 13015497 13015595 -129255849 + (TA)n Simple_repeat Simple_repeat 1 99 0 678 80 0 10 chr9 13015632 13015732 -129255712 - AluY SINE Alu -18 293 195 1872 135 0 28 chr9 13016473 13016762 -129254682 + AluY SINE Alu 3 283 -28 1918 168 111 0 chr9 13016840 13017220 -129254224 - MSTB LTR MaLR 0 426 5 319 343 93 7 chr9 13017401 13017541 -129253903 - L1ME LINE L1 -337 5833 5682 1386 285 56 39 chr9 13017893 13018176 -129253268 + L1ME1 LINE L1 3566 3843 -2303 1801 149 79 22 chr9 13018176 13018531 -129252913 + THE1C LTR MaLR 1 375 0 1386 285 56 39 chr9 13018531 13019218 -129252226 + L1ME1 LINE L1 3843 4552 -1594 926 191 56 0 chr9 13019225 13019440 -129252004 + L1MA4 LINE L1 6068 6294 -6 2217 245 35 26 chr9 13019518 13020057 -129251387 + MLT2B3 LTR ERVL 1 544 -10 588 294 52 8 chr9 13020078 13020330 -129251114 + L1ME1 LINE L1 4605 4867 -1279 192 346 191 33 chr9 13020757 13021240 -129250204 - L2 LINE L2 -557 2757 2199 2014 218 62 19 chr9 13021256 13021774 -129249670 - MER90 LTR ERV1 0 614 75 265 290 0 0 chr9 13021845 13021907 -129249537 - MER90 LTR ERV1 -525 89 28 23 68 0 0 chr9 13022331 13022375 -129249069 + AT_rich Low_complexity Low_complexity 1 44 0 1937 144 13 3 chr9 13022936 13023235 -129248209 - AluSx SINE Alu -10 302 1 21 82 0 0 chr9 13024419 13024468 -129246976 + AT_rich Low_complexity Low_complexity 1 49 0 38 0 0 0 chr9 13024483 13024521 -129246923 + AT_rich Low_complexity Low_complexity 1 38 0 528 90 13 0 chr9 13024706 13024784 -129246660 + L1MB1 LINE L1 5336 5414 -769 2675 192 20 2 chr9 13024800 13025357 -129246087 + L1MB1 LINE L1 5591 6157 -11 225 0 0 0 chr9 13025357 13025382 -129246062 + (CA)n Simple_repeat Simple_repeat 1 25 0 389 349 123 21 chr9 13025395 13025965 -129245479 + HAL1 LINE L1 24 651 -1856 342 0 0 0 chr9 13026077 13026115 -129245329 + (CA)n Simple_repeat Simple_repeat 2 39 0 21 0 0 0 chr9 13027174 13027195 -129244249 + AT_rich Low_complexity Low_complexity 1 21 0 348 171 43 0 chr9 13027477 13027547 -129243897 + L1ME LINE L1 5550 5622 -542 22 35 0 0 chr9 13027547 13027576 -129243868 + AT_rich Low_complexity Low_complexity 1 29 0 241 264 109 30 chr9 13027824 13028153 -129243291 + L1ME1 LINE L1 4947 5304 -842 908 254 75 20 chr9 13028198 13028674 -129242770 + L1ME1 LINE L1 5494 6103 -63 27064 128 23 72 chr9 13028773 13031577 -129239867 - L1PA8 LINE L1 -13 6159 3218 2097 102 13 25 chr9 13031577 13031891 -129239553 - AluSq SINE Alu -3 310 1 27064 128 23 72 chr9 13031891 13033116 -129238328 - L1PA8 LINE L1 -2954 3218 1934 2138 56 42 24 chr9 13033116 13033403 -129238041 + AluY SINE Alu 1 292 -19 27064 128 23 72 chr9 13033403 13035861 -129235583 - L1PA8 LINE L1 -4238 1934 9 6137 116 49 21 chr9 13035940 13037028 -129234416 - L1MA2 LINE L1 0 6304 5184 189 422 92 0 chr9 13037682 13037791 -129233653 + L2 LINE L2 3151 3269 -3 2139 99 7 10 chr9 13038489 13038793 -129232651 + AluSg SINE Alu 1 303 -7 21 36 0 0 chr9 13038968 13038996 -129232448 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr9 13039188 13039210 -129232234 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chr9 13039561 13039596 -129231848 + AT_rich Low_complexity Low_complexity 1 35 0 378 0 0 0 chr9 13042032 13042074 -129229370 + (TG)n Simple_repeat Simple_repeat 2 43 0 2137 111 3 0 chr9 13042074 13042371 -129229073 - AluSg SINE Alu -12 298 1 1578 228 144 78 chr9 13042644 13043250 -129228194 - MLT1E1 LTR MaLR -8 646 1 808 268 47 33 chr9 13044323 13044789 -129226655 - Charlie1b DNA MER1_type -1 522 16 202 200 0 0 chr9 13045280 13045320 -129226124 + (CA)n Simple_repeat Simple_repeat 1 40 0 337 319 65 27 chr9 13045514 13045699 -129225745 + L1MEd LINE L1 904 1095 -5024 183 184 20 82 chr9 13045723 13045772 -129225672 - L2 LINE L2 -2630 684 639 627 280 99 35 chr9 13046381 13046613 -129224831 - MIR SINE MIR -14 248 2 337 321 78 45 chr9 13046670 13047028 -129224416 + L1 LINE L1 3977 4346 -1800 316 159 14 29 chr9 13047797 13047866 -129223578 + L1M1 LINE L1 5543 5610 -694 1237 212 43 96 chr9 13048690 13048881 -129222563 + MER110A LTR ERV1 5 205 -273 333 0 0 0 chr9 13048881 13048918 -129222526 + (CA)n Simple_repeat Simple_repeat 2 38 0 1237 212 43 96 chr9 13048918 13049251 -129222193 + MER110A LTR ERV1 205 470 -8 1847 99 72 0 chr9 13049573 13049835 -129221609 - AluSg SINE Alu -20 290 10 1514 186 27 27 chr9 13050210 13050506 -129220938 + AluJb SINE Alu 6 301 -11 1402 198 35 31 chr9 13050756 13051074 -129220370 - MLT1A1 LTR MaLR -46 319 1 1542 217 160 5 chr9 13051333 13051770 -129219674 + MLT1D LTR MaLR 1 505 0 385 280 21 0 chr9 13052008 13052101 -129219343 - MER81 DNA DNA 0 114 20 1242 228 120 7 chr9 13052197 13052631 -129218813 + Charlie4a DNA MER1_type 25 507 -1 1772 174 52 0 chr9 13054243 13054570 -129216874 - MER2 DNA MER2_type 0 344 1 304 253 63 11 chr9 13055518 13055613 -129215831 - MIR SINE MIR -162 100 1 2221 4 19 0 chr9 13055772 13056034 -129215410 + L1PA3 LINE L1 5889 6155 0 22 0 0 0 chr9 13056600 13056622 -129214822 + AT_rich Low_complexity Low_complexity 1 22 0 32 0 0 0 chr9 13056663 13056695 -129214749 + AT_rich Low_complexity Low_complexity 1 32 0 1616 127 6 106 chr9 13056699 13057030 -129214414 + AluSx SINE Alu 2 299 -3 471 128 139 0 chr9 13057064 13057150 -129214294 + AluSg/x SINE Alu 207 304 -6 4892 160 50 16 chr9 13057166 13057830 -129213614 - L1MA7 LINE L1 -6 6285 5645 234 0 0 0 chr9 13057830 13057856 -129213588 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 4892 160 50 16 chr9 13057856 13058601 -129212843 - L1MA7 LINE L1 -646 5645 4828 22 0 0 0 chr9 13059338 13059360 -129212084 + AT_rich Low_complexity Low_complexity 1 22 0 2267 230 54 17 chr9 13059514 13060105 -129211339 - L1MB7 LINE L1 -44 6140 5528 284 250 0 14 chr9 13062231 13062303 -129209141 - MER77 LTR ERV1 0 605 535 1703 209 45 76 chr9 13063042 13063530 -129207914 - MER77 LTR ERV1 0 605 133 2044 209 44 65 chr9 13063534 13063980 -129207464 + MLT2B1 LTR ERVL 3 438 -82 1868 182 23 8 chr9 13063980 13064376 -129207068 + L1MA5 LINE L1 5897 6298 -2 2044 209 44 65 chr9 13064376 13064456 -129206988 + MLT2B1 LTR ERVL 438 518 -2 410 269 43 50 chr9 13064456 13064594 -129206850 - MER77 LTR ERV1 -468 137 1 4460 254 59 57 chr9 13065106 13067910 -129203534 - L1M4c LINE L1 -3475 3169 260 2565 4 0 0 chr9 13067910 13068188 -129203256 - AluYa5 SINE Alu -6 305 28 4460 254 59 57 chr9 13068188 13068448 -129202996 - L1M4c LINE L1 -6384 260 2 4328 253 94 19 chr9 13068501 13070398 -129201046 + L1MC2 LINE L1 2627 4665 -1481 4146 184 99 6 chr9 13070464 13071350 -129200094 + L1MC2 LINE L1 5355 6323 -21 410 275 24 12 chr9 13071360 13071527 -129199917 - Charlie5 DNA MER1_type -1933 679 511 492 292 162 5 chr9 13072947 13073132 -129198312 - MIR SINE MIR -1 261 48 252 224 15 60 chr9 13073235 13073302 -129198142 - L2 LINE L2 -5 3267 3204 3447 183 58 36 chr9 13073402 13073523 -129197921 - L1MA7 LINE L1 -4 6287 6170 1676 161 7 33 chr9 13073523 13073827 -129197617 - AluJb SINE Alu -8 304 9 3447 183 58 36 chr9 13073827 13074546 -129196898 - L1MA7 LINE L1 -121 6170 5428 328 313 30 0 chr9 13074583 13074717 -129196727 - L1M3b LINE L1 -6139 142 5 816 139 51 126 chr9 13075407 13075653 -129195791 + AluJb SINE Alu 87 316 0 370 95 53 0 chr9 13075934 13076029 -129195415 + (TA)n Simple_repeat Simple_repeat 2 101 0 307 272 126 19 chr9 13076285 13076388 -129195056 - L2 LINE L2 -7 3306 3193 187 367 11 11 chr9 13076684 13076774 -129194670 + L2 LINE L2 3183 3272 0 204 350 49 28 chr9 13076779 13076922 -129194522 + MIR SINE MIR 8 153 -109 206 99 89 10 chr9 13078097 13078198 -129193246 + (TA)n Simple_repeat Simple_repeat 2 110 0 182 225 75 0 chr9 13078284 13078324 -129193120 + L2 LINE L2 3268 3310 -3 186 308 25 83 chr9 13079693 13079813 -129191631 + MIR SINE MIR 75 187 -75 183 264 0 19 chr9 13079857 13079910 -129191534 - MIR SINE MIR -2 260 209 360 0 0 0 chr9 13079914 13079954 -129191490 + (TA)n Simple_repeat Simple_repeat 1 40 0 24 53 0 0 chr9 13080671 13080709 -129190735 + AT_rich Low_complexity Low_complexity 1 38 0 522 0 0 0 chr9 13080867 13080925 -129190519 + (TTTTA)n Simple_repeat Simple_repeat 2 59 0 1374 189 4 8 chr9 13080941 13081190 -129190254 - AluJo SINE Alu -64 248 1 192 40 0 0 chr9 13082870 13082895 -129188549 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 34 55 0 0 chr9 13083068 13083123 -129188321 + AT_rich Low_complexity Low_complexity 1 55 0 278 281 26 26 chr9 13084165 13084279 -129187165 + L1ME LINE L1 5696 5809 -312 198 0 0 0 chr9 13085804 13085826 -129185618 + (CA)n Simple_repeat Simple_repeat 2 23 0 30 0 0 0 chr9 13085880 13085910 -129185534 + AT_rich Low_complexity Low_complexity 1 30 0 2005 110 7 24 chr9 13085950 13086240 -129185204 - AluSg SINE Alu -12 298 14 307 271 82 35 chr9 13086405 13086575 -129184869 + L1ME4a LINE L1 5769 5946 -175 1125 252 117 10 chr9 13086800 13087273 -129184171 + Charlie1b DNA MER1_type 1 518 -5 22 56 0 0 chr9 13087851 13087887 -129183557 + AT_rich Low_complexity Low_complexity 1 36 0 27 49 0 0 chr9 13087954 13087995 -129183449 + AT_rich Low_complexity Low_complexity 1 41 0 540 256 150 11 chr9 13088275 13088455 -129182989 - MER58C DNA MER1_type -10 205 1 24 67 0 0 chr9 13088540 13088585 -129182859 + AT_rich Low_complexity Low_complexity 1 45 0 249 210 0 0 chr9 13088800 13088862 -129182582 + GA-rich Low_complexity Low_complexity 2 63 0 228 281 0 0 chr9 13089494 13089558 -129181886 + L1ME LINE L1 5727 5790 -331 * 756 203 18 16 chr9 13089556 13089749 -129181695 + L1MC3 LINE L1 6137 6326 -18 567 283 106 1 chr9 13090434 13090637 -129180807 - MIR SINE MIR -1 261 38 204 67 0 0 chr9 13091120 13091150 -129180294 + (A)n Simple_repeat Simple_repeat 1 30 0 237 119 0 0 chr9 13092830 13092872 -129178572 + (TC)n Simple_repeat Simple_repeat 2 43 0 1194 108 0 17 chr9 13093546 13093722 -129177722 - AluSg/x SINE Alu 0 312 140 1533 198 38 25 chr9 13093727 13094041 -129177403 + MLT1A1 LTR MaLR 48 365 0 233 260 87 8 chr9 13094762 13094889 -129176555 + L1MB8 LINE L1 2896 3032 -3114 3046 242 57 36 chr9 13094917 13097096 -129174348 + L1MB8 LINE L1 3923 6163 -15 21 36 0 0 chr9 13097224 13097252 -129174192 + AT_rich Low_complexity Low_complexity 1 28 0 524 316 161 0 chr9 13097379 13097597 -129173847 - MIR SINE MIR -3 259 7 9467 178 30 20 chr9 13097991 13102421 -129169023 - L1PBa LINE L1 -1546 5316 620 438 211 19 0 chr9 13102406 13102510 -129168934 - L1PBa LINE L1 -6668 195 90 * 3174 208 91 70 chr9 13102611 13103385 -129168059 - L1 LINE L1 -1515 4631 3875 6313 124 9 10 chr9 13103385 13104355 -129167089 - LTR5 LTR ERVK 0 969 1 207 0 0 0 chr9 13104356 13104379 -129167065 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1871 138 4 0 chr9 13104380 13104655 -129166789 - AluSg SINE Alu -32 278 3 3174 208 91 70 chr9 13104655 13105443 -129166001 - L1 LINE L1 -2270 3876 2750 * 4301 74 6 0 chr9 13105441 13106124 -129165320 + L1PA7 LINE L1 5143 5828 -326 1963 92 4 18 chr9 13106125 13106397 -129165047 + AluY SINE Alu 43 310 -1 1351 82 0 0 chr9 13106398 13106568 -129164876 + AluY SINE Alu 123 292 -19 2405 78 3 14 chr9 13106568 13106913 -129164531 + L1PA7 LINE L1 5814 6154 0 21 71 0 0 chr9 13107907 13107949 -129163495 + AT_rich Low_complexity Low_complexity 1 42 0 765 222 21 21 chr9 13108277 13108466 -129162978 - MLT1C LTR MaLR 0 467 279 1386 136 103 7 chr9 13108485 13108757 -129162687 - MER67C LTR ERV1 -307 403 106 2252 133 63 24 chr9 13108758 13109171 -129162273 - Tigger2a DNA MER2_type -5 429 1 497 208 8 17 chr9 13109171 13109285 -129162159 - MER67D LTR ERV1 -401 113 1 239 348 0 42 chr9 13109285 13109403 -129162041 + L2 LINE L2 3163 3275 -38 2021 142 10 0 chr9 13109442 13109744 -129161700 - AluSx SINE Alu -5 307 3 1968 280 76 24 chr9 13112064 13112983 -129158461 - L1ME1 LINE L1 -51 6115 5155 1507 240 232 40 chr9 13113241 13114037 -129157407 - L1MC4 LINE L1 -314 7728 6780 997 275 26 39 chr9 13114103 13114499 -129156945 - MLT1E3 LTR MaLR -1 623 200 271 247 41 0 chr9 13114510 13114583 -129156861 - MLT1C LTR MaLR -391 263 188 7283 112 23 60 chr9 13115321 13121323 -129150121 - L1PA5 LINE L1 -6 6148 418 270 0 0 0 chr9 13121323 13121353 -129150091 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 7283 112 23 60 chr9 13121353 13121749 -129149695 - L1PA5 LINE L1 -5736 418 9 2149 134 30 19 chr9 13122914 13123279 -129148165 - THE1C LTR MaLR -4 371 3 24 67 0 0 chr9 13123384 13123429 -129148015 + AT_rich Low_complexity Low_complexity 1 45 0 300 359 39 0 chr9 13124073 13124176 -129147268 + MER91C DNA MER1_type 2 108 -32 234 347 29 35 chr9 13124305 13124475 -129146969 + L1MCc LINE L1 114 282 -6141 3846 204 10 7 chr9 13124625 13125396 -129146048 - MSTA-int LTR MaLR -877 774 1 2053 190 59 5 chr9 13125396 13125802 -129145642 - MSTA LTR MaLR 0 428 1 3199 215 36 12 chr9 13125802 13126634 -129144810 - L1 LINE L1 -1171 4975 4124 * 3991 178 61 6 chr9 13126633 13127449 -129143995 + L1MB3 LINE L1 5319 6179 -4 491 281 31 6 chr9 13127707 13127867 -129143577 + L1MC5 LINE L1 7762 7925 -36 1773 217 13 0 chr9 13127876 13128250 -129143194 + L1MC1 LINE L1 5950 6328 -5 2222 168 21 46 chr9 13128385 13128820 -129142624 + MLT1C LTR MaLR 1 424 -43 662 168 0 48 chr9 13128818 13128943 -129142501 + MLT1C LTR MaLR 349 467 0 * 2225 126 0 0 chr9 13129561 13129870 -129141574 + AluSq SINE Alu 3 311 -2 647 289 79 33 chr9 13130020 13130185 -129141259 + L1ME2 LINE L1 4624 4780 -1366 1440 104 50 9 chr9 13130185 13130406 -129141038 - MER30 DNA MER1_type 0 230 1 647 289 79 33 chr9 13130406 13130749 -129140695 + L1ME2 LINE L1 4780 5155 -991 3138 115 17 19 chr9 13130808 13131347 -129140097 - L1MA3 LINE L1 0 6305 5768 231 242 62 37 chr9 13131432 13131508 -129139936 + L1ME2 LINE L1 5265 5338 -824 1441 208 48 28 chr9 13131508 13131864 -129139580 + MLT1A1 LTR MaLR 3 365 0 231 242 62 37 chr9 13131864 13131948 -129139496 + L1ME2 LINE L1 5338 5429 -733 696 286 65 26 chr9 13131949 13132360 -129139084 + L1ME2 LINE L1 5719 6148 -16 1753 210 39 50 chr9 13132395 13132833 -129138611 + MER82 DNA MER2_type 2 434 -219 5167 185 16 10 chr9 13132833 13133429 -129138015 - L1P LINE L1 -1218 4928 4322 2336 97 3 0 chr9 13133429 13133738 -129137706 - AluSp SINE Alu -3 310 1 5167 185 16 10 chr9 13133738 13134175 -129137269 - L1P LINE L1 -1824 4322 3889 * 5584 113 28 78 chr9 13134173 13135502 -129135942 + L1PA14 LINE L1 4927 6161 0 195 129 0 0 chr9 13135887 13135918 -129135526 + (A)n Simple_repeat Simple_repeat 1 31 0 745 271 64 9 chr9 13135921 13136139 -129135305 + MER82 DNA MER2_type 424 653 0 3744 121 48 139 chr9 13136742 13138284 -129133160 - pTR5 LTR ERV1 0 2438 741 26 0 0 0 chr9 13138426 13138452 -129132992 + AT_rich Low_complexity Low_complexity 1 26 0 216 163 0 0 chr9 13138564 13138607 -129132837 + (TA)n Simple_repeat Simple_repeat 2 44 0 216 216 0 0 chr9 13138598 13138649 -129132795 + (CA)n Simple_repeat Simple_repeat 2 52 0 1754 155 36 65 chr9 13138649 13139029 -129132415 + Tigger2a DNA MER2_type 1 371 -2337 225 0 0 0 chr9 13139029 13139054 -129132390 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 23 0 0 0 chr9 13139181 13139204 -129132240 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr9 13139241 13139264 -129132180 + AT_rich Low_complexity Low_complexity 1 23 0 193 54 0 54 chr9 13139736 13139773 -129131671 + (CAAAA)n Simple_repeat Simple_repeat 4 38 0 24 53 0 0 chr9 13140314 13140352 -129131092 + AT_rich Low_complexity Low_complexity 1 38 0 251 366 59 0 chr9 13141060 13141161 -129130283 + MER91C DNA MER1_type 2 108 -32 1885 166 84 56 chr9 13141652 13142092 -129129352 + L1PA15 LINE L1 5456 5842 -314 234 91 0 0 chr9 13142092 13142125 -129129319 + (TA)n Simple_repeat Simple_repeat 2 34 0 1885 166 84 56 chr9 13142125 13142447 -129128997 + L1PA15 LINE L1 5842 6153 -3 261 117 67 33 chr9 13142450 13142510 -129128934 + Tigger3(Golem) DNA MER2_type 198 259 -2770 23 54 0 0 chr9 13142607 13142644 -129128800 + AT_rich Low_complexity Low_complexity 1 37 0 930 306 93 58 chr9 13144010 13144601 -129126843 + L1M2c LINE L1 7 618 -6171 * 1629 160 16 13 chr9 13144598 13144916 -129126528 - L1 LINE L1 -1751 4395 4077 1930 211 29 88 chr9 13144969 13145558 -129125886 - MLT2B3 LTR ERVL 0 554 1 2233 112 0 0 chr9 13145736 13146039 -129125405 + AluY SINE Alu 7 309 -2 28 29 0 0 chr9 13146342 13146377 -129125067 + AT_rich Low_complexity Low_complexity 1 35 0 201 213 0 0 chr9 13146481 13146528 -129124916 + (TA)n Simple_repeat Simple_repeat 2 48 0 249 83 0 0 chr9 13146539 13146575 -129124869 + (CA)n Simple_repeat Simple_repeat 2 37 0 975 227 10 15 chr9 13146576 13146779 -129124665 - MER8 DNA MER2_type -2 237 36 21 57 0 0 chr9 13146783 13146818 -129124626 + AT_rich Low_complexity Low_complexity 1 35 0 25 0 0 0 chr9 13146913 13146938 -129124506 + AT_rich Low_complexity Low_complexity 1 25 0 1953 125 4 0 chr9 13146940 13147219 -129124225 + AluSx SINE Alu 3 282 -30 317 252 0 0 chr9 13147226 13147333 -129124111 + (TAGA)n Simple_repeat Simple_repeat 4 110 0 704 61 10 0 chr9 13147500 13147598 -129123846 + (TCTA)n Simple_repeat Simple_repeat 4 102 0 265 235 37 0 chr9 13147734 13147815 -129123629 + (TCTA)n Simple_repeat Simple_repeat 1 84 0 240 311 68 25 chr9 13147954 13148115 -129123329 - L1 LINE L1 -1983 4163 3996 701 335 23 23 chr9 13148132 13148559 -129122885 - L1ME3A LINE L1 -17 6153 5727 1609 220 35 27 chr9 13148595 13148968 -129122476 + L1MDa LINE L1 18 393 -6147 1450 118 45 0 chr9 13149054 13149274 -129122170 + MER30 DNA MER1_type 1 230 0 7730 39 2 5 chr9 13150005 13151735 -129119709 - L1PA4 LINE L1 -3 6152 4425 23573 40 9 2 chr9 13151735 13154703 -129116741 + L1PA4 LINE L1 1408 4398 -1748 549 286 132 19 chr9 13155563 13155829 -129115615 + MLT1I LTR MaLR 111 406 -3 21 57 0 0 chr9 13156221 13156256 -129115188 + AT_rich Low_complexity Low_complexity 1 35 0 1844 203 84 66 chr9 13156365 13156863 -129114581 + MER67D LTR ERV1 1 507 -7 791 349 29 14 chr9 13157272 13157622 -129113822 + Charlie6 DNA MER1_type 21 375 -3125 1197 150 340 3 chr9 13157763 13158057 -129113387 - MSTA LTR MaLR -34 394 2 968 97 7 14 chr9 13158058 13158202 -129113242 - THE1C-int LTR MaLR 0 1580 1438 6336 150 60 6 chr9 13158213 13159286 -129112158 - THE1C-int LTR MaLR -449 1131 1 1678 155 78 19 chr9 13159298 13159620 -129111824 - THE1C LTR MaLR -34 341 1 225 247 123 0 chr9 13159623 13159704 -129111740 + Charlie6 DNA MER1_type 636 726 -2774 402 279 81 25 chr9 13160631 13160792 -129110652 - MLT1J2 LTR MaLR -8 442 273 213 196 0 0 chr9 13163299 13163350 -129108094 + (TA)n Simple_repeat Simple_repeat 1 51 0 21 57 0 0 chr9 13163421 13163456 -129107988 + AT_rich Low_complexity Low_complexity 1 35 0 34 79 0 0 chr9 13163614 13163690 -129107754 + AT_rich Low_complexity Low_complexity 1 76 0 36 53 0 0 chr9 13164178 13164235 -129107209 + AT_rich Low_complexity Low_complexity 1 57 0 287 221 12 0 chr9 13164477 13164563 -129106881 + (TA)n Simple_repeat Simple_repeat 2 88 0 250 295 57 57 chr9 13164644 13164749 -129106695 - MIR SINE MIR -147 115 11 30 27 0 0 chr9 13165622 13165659 -129105785 + AT_rich Low_complexity Low_complexity 1 37 0 22 70 0 0 chr9 13166128 13166171 -129105273 + AT_rich Low_complexity Low_complexity 1 43 0 979 225 4 26 chr9 13166187 13166414 -129105030 - L1MD2 LINE L1 -17 6342 6121 5239 201 28 7 chr9 13166861 13168110 -129103334 - L1MC1 LINE L1 -6 6396 5122 321 246 0 0 chr9 13168112 13168177 -129103267 - L1MC1 LINE L1 -4041 2355 2291 1994 162 123 5 chr9 13168417 13168800 -129102644 - MSTA LTR MaLR 0 428 1 4589 217 37 15 chr9 13270014 13272053 -128999391 + L1M2 LINE L1 1928 4066 -2782 234 0 0 0 chr9 13272063 13272089 -128999355 + (GA)n Simple_repeat Simple_repeat 2 27 0 3757 202 39 24 chr9 13272189 13274118 -128997326 - L1M2 LINE L1 -656 5656 3512 1383 169 0 25 chr9 13274301 13274579 -128996865 + L1PB1 LINE L1 5786 6056 -95 586 305 126 41 chr9 13275011 13275549 -128995895 - L1MC5 LINE L1 -45 7916 7333 214 214 29 58 chr9 13275861 13275964 -128995480 + (TATAA)n Simple_repeat Simple_repeat 1 100 0 22 80 0 0 chr9 13276478 13276528 -128994916 + AT_rich Low_complexity Low_complexity 1 50 0 9551 207 34 13 chr9 13276933 13277161 -128994283 + L1P5 LINE L1 2694 2916 -3235 2782 7 0 0 chr9 13277161 13277465 -128993979 + AluYa5 SINE Alu 1 304 -7 9551 207 34 13 chr9 13277465 13280237 -128991207 + L1P5 LINE L1 2916 5754 -397 2890 193 63 15 chr9 13280337 13281021 -128990423 - L1PA12 LINE L1 -4811 2773 2057 225 270 0 16 chr9 13281058 13281121 -128990323 - L1PA12 LINE L1 -5660 1925 1864 324 356 37 30 chr9 13281413 13281683 -128989761 - L1M2 LINE L1 -5782 1067 796 1137 323 65 36 chr9 13281795 13282606 -128988838 - L1PA12 LINE L1 -5660 1921 10 1136 234 69 76 chr9 13284056 13284449 -128986995 + MLT1B LTR MaLR 1 390 0 1013 287 45 27 chr9 13284473 13284874 -128986570 - L1MCc LINE L1 -5994 429 22 953 291 175 41 chr9 13285284 13285792 -128985652 - MLT1H1 LTR MaLR 0 555 15 237 65 0 0 chr9 13285795 13285826 -128985618 + (CA)n Simple_repeat Simple_repeat 2 32 0 232 301 48 0 chr9 13286163 13286246 -128985198 - HAL1 LINE L1 -16 2491 2405 1184 216 17 6 chr9 13286286 13286617 -128984827 + MER74C LTR ERVL 3 419 -139 302 266 115 91 chr9 13288039 13288423 -128983021 + MLT1J LTR MaLR 45 437 -74 437 316 175 0 chr9 13288659 13288865 -128982579 - MIR SINE MIR 0 262 21 1025 216 9 0 chr9 13289655 13289873 -128981571 - THE1-int LTR MaLR -33 1547 1328 787 310 7 19 chr9 13290081 13290500 -128980944 - L1P4 LINE L1 -486 6383 5970 278 23 0 68 chr9 13290582 13290626 -128980818 + (T)n Simple_repeat Simple_repeat 1 41 0 8040 251 62 26 chr9 13290626 13291415 -128980029 - L1P4 LINE L1 -964 5885 5126 362 21 21 0 chr9 13291415 13291462 -128979982 + (TG)n Simple_repeat Simple_repeat 1 48 0 8040 251 62 26 chr9 13291462 13291664 -128979780 - L1P4 LINE L1 -1723 5126 4933 2361 61 3 3 chr9 13291664 13291974 -128979470 + AluY SINE Alu 1 310 -1 8040 251 62 26 chr9 13291974 13293613 -128977831 - L1P4 LINE L1 -1916 4933 3160 2998 145 26 33 chr9 13293616 13294197 -128977247 - L1P4 LINE L1 -3952 2897 2321 620 149 35 8 chr9 13294298 13294518 -128976926 + L1P3 LINE L1 112 519 -5356 323 130 52 0 chr9 13294516 13294593 -128976851 - L1P LINE L1 -2962 3184 3104 * 10085 191 17 27 chr9 13294597 13295287 -128976157 + L1P3 LINE L1 523 1219 -5242 350 85 17 0 chr9 13295287 13295346 -128976098 + (CAA)n Simple_repeat Simple_repeat 1 60 0 10085 191 17 27 chr9 13295346 13297432 -128974012 + L1P3 LINE L1 1219 3344 -3117 184 327 40 10 chr9 13297680 13297781 -128973663 + MIR SINE MIR 48 151 -111 22 35 0 0 chr9 13297935 13297964 -128973480 + AT_rich Low_complexity Low_complexity 1 29 0 369 62 0 0 chr9 13297972 13298020 -128973424 + (TA)n Simple_repeat Simple_repeat 2 49 0 1646 166 0 4 chr9 13298092 13298351 -128973093 - AluSq SINE Alu -49 264 7 23 33 0 0 chr9 13298447 13298477 -128972967 + AT_rich Low_complexity Low_complexity 1 30 0 1908 172 34 0 chr9 13298600 13298926 -128972518 + MER1B DNA MER1_type 1 337 0 3583 161 25 3 chr9 13299355 13300026 -128971418 - L1MA4 LINE L1 -4 6296 5611 2060 161 18 19 chr9 13300026 13300456 -128970988 + L1M1 LINE L1 5221 5650 -650 193 335 97 65 chr9 13300584 13300769 -128970675 - MIR SINE MIR -68 194 4 1402 245 50 6 chr9 13301714 13302053 -128969391 - MER21B LTR ERV1 -146 717 364 194 296 130 28 chr9 13302057 13302165 -128969279 - L2 LINE L2 -12 3260 3142 21 36 0 0 chr9 13304886 13304914 -128966530 + AT_rich Low_complexity Low_complexity 1 28 0 192 77 0 0 chr9 13305980 13306006 -128965438 + (GA)n Simple_repeat Simple_repeat 1 26 0 348 250 45 75 chr9 13306507 13306539 -128964905 - L1M4c LINE L1 -5077 1307 1276 306 73 0 0 chr9 13306539 13306580 -128964864 + (CA)n Simple_repeat Simple_repeat 1 41 0 348 250 45 75 chr9 13306580 13306747 -128964697 - L1M4c LINE L1 -5108 1276 1114 376 184 3 8 chr9 13306810 13306907 -128964537 - AluJ/FRAM SINE Alu -15 287 131 207 0 0 0 chr9 13307500 13307523 -128963921 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 14183 131 13 0 chr9 13307857 13310925 -128960519 + L1PA8A LINE L1 3028 6126 -5 1800 210 82 12 chr9 13310990 13311418 -128960026 + LOR1b LTR ERV1 1 458 -3 1513 163 12 0 chr9 13312115 13312366 -128959078 + MSTA LTR MaLR 1 254 -174 310 146 21 0 chr9 13312841 13312889 -128958555 - LOR1a LTR ERV1 0 497 449 29 84 0 0 chr9 13313040 13313111 -128958333 + AT_rich Low_complexity Low_complexity 1 71 0 189 74 0 0 chr9 13313797 13313824 -128957620 + (CATATA)n Simple_repeat Simple_repeat 2 28 0 239 352 43 31 chr9 13314441 13314603 -128956841 + MIR SINE MIR 32 195 -67 302 268 92 52 chr9 13314686 13314789 -128956655 + MIR SINE MIR 41 153 -109 1689 187 57 157 chr9 13314789 13315597 -128955847 + LTR8A LTR ERV1 1 727 0 302 268 92 52 chr9 13315597 13315646 -128955798 + MIR SINE MIR 153 199 -63 584 313 152 36 chr9 13317706 13318173 -128953271 - L2 LINE L2 -528 2786 2266 273 29 0 0 chr9 13318175 13318209 -128953235 + (TG)n Simple_repeat Simple_repeat 2 35 0 26 0 0 0 chr9 13318584 13318610 -128952834 + AT_rich Low_complexity Low_complexity 1 26 0 21 36 0 0 chr9 13318801 13318829 -128952615 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr9 13319012 13319034 -128952410 + AT_rich Low_complexity Low_complexity 1 22 0 1753 167 3 13 chr9 13319284 13319616 -128951828 - AluSx SINE Alu 0 312 2 2221 183 49 6 chr9 13320399 13320892 -128950552 - L1MA9 LINE L1 -2 6310 5797 219 69 0 0 chr9 13320897 13320926 -128950518 + (TG)n Simple_repeat Simple_repeat 2 30 0 242 153 17 0 chr9 13321019 13321078 -128950366 + (TA)n Simple_repeat Simple_repeat 1 60 0 323 23 23 0 chr9 13321116 13321160 -128950284 + (TCTA)n Simple_repeat Simple_repeat 2 46 0 980 180 0 0 chr9 13321188 13321355 -128950089 - L1MA9 LINE L1 -542 5749 5583 2658 209 42 12 chr9 13321357 13322028 -128949416 - L1MA9 LINE L1 -909 5237 4547 4473 165 22 26 chr9 13322028 13323027 -128948417 - L1PB4 LINE L1 -3 6153 5158 25 0 0 0 chr9 13323516 13323541 -128947903 + AT_rich Low_complexity Low_complexity 1 25 0 2270 96 3 0 chr9 13324580 13324882 -128946562 + AluSx SINE Alu 2 304 -8 21 36 0 0 chr9 13324971 13324999 -128946445 + AT_rich Low_complexity Low_complexity 1 28 0 719 135 0 0 chr9 13325033 13325137 -128946307 - MLT1A1 LTR MaLR 0 365 262 566 167 32 56 chr9 13325139 13325265 -128946179 - MLT1A1 LTR MaLR -242 123 1 8652 223 63 60 chr9 13325317 13329821 -128941623 - L1MA9 LINE L1 -11 6537 2015 3106 148 17 0 chr9 13329901 13330379 -128941065 + LTR10B LTR ERV1 20 505 0 650 176 170 13 chr9 13330379 13330532 -128940912 - MER4A-int LTR ERV1 -6421 177 1 3397 133 6 50 chr9 13330539 13331162 -128940282 - MER4A LTR ERV1 -4 596 1 488 331 36 49 chr9 13331227 13331638 -128939806 + L1MC4a LINE L1 5487 5892 -1916 24 103 0 0 chr9 13332475 13332562 -128938882 + AT_rich Low_complexity Low_complexity 1 87 0 23 33 0 0 chr9 13332938 13332968 -128938476 + AT_rich Low_complexity Low_complexity 1 30 0 2165 57 4 0 chr9 13333523 13333788 -128937656 - AluY SINE Alu -11 300 35 903 271 48 38 chr9 13335042 13335415 -128936029 - LTR52 LTR ERVL -34 387 11 187 377 0 26 chr9 13335609 13335686 -128935758 + L2 LINE L2 3021 3095 -177 428 336 114 19 chr9 13335887 13336211 -128935233 + LTR33 LTR ERVL 111 465 -56 1622 205 130 20 chr9 13336563 13337016 -128934428 - MLT1D LTR MaLR -2 503 1 1549 189 36 6 chr9 13337587 13337921 -128933523 + L1MA5 LINE L1 5955 6298 -2 204 245 0 19 chr9 13338613 13338666 -128932778 + MIR SINE MIR 175 226 -36 21 0 0 0 chr9 13338716 13338737 -128932707 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr9 13339331 13339365 -128932079 + AT_rich Low_complexity Low_complexity 1 34 0 1916 125 4 7 chr9 13339681 13339962 -128931482 + AluSx SINE Alu 1 280 -32 288 0 0 0 chr9 13339966 13339998 -128931446 + (GA)n Simple_repeat Simple_repeat 2 33 0 2336 138 102 4 chr9 13340242 13340687 -128930757 - L1MA5 LINE L1 -35 6265 5775 248 184 0 0 chr9 13340671 13340720 -128930724 + L1MA6 LINE L1 6248 6296 -4 * 30 45 0 0 chr9 13340720 13340764 -128930680 + AT_rich Low_complexity Low_complexity 1 44 0 225 211 42 11 chr9 13341010 13341105 -128930339 + (TA)n Simple_repeat Simple_repeat 1 98 0 219 188 0 0 chr9 13341125 13341173 -128930271 + (TA)n Simple_repeat Simple_repeat 2 49 0 23 54 0 0 chr9 13341747 13341784 -128929660 + AT_rich Low_complexity Low_complexity 1 37 0 24 77 0 0 chr9 13343172 13343224 -128928220 + AT_rich Low_complexity Low_complexity 1 52 0 22 35 0 0 chr9 13344060 13344089 -128927355 + AT_rich Low_complexity Low_complexity 1 29 0 2230 68 26 13 chr9 13344752 13344878 -128926566 + AluY SINE Alu 1 124 -187 243 0 0 0 chr9 13344878 13344905 -128926539 + (CA)n Simple_repeat Simple_repeat 2 28 0 2230 68 26 13 chr9 13344905 13345085 -128926359 + AluY SINE Alu 124 311 0 26 0 0 0 chr9 13345252 13345278 -128926166 + AT_rich Low_complexity Low_complexity 1 26 0 25 75 0 0 chr9 13345677 13345730 -128925714 + AT_rich Low_complexity Low_complexity 1 53 0 22 35 0 0 chr9 13345852 13345881 -128925563 + AT_rich Low_complexity Low_complexity 1 29 0 962 168 10 41 chr9 13346287 13346483 -128924961 - L1MB1 LINE L1 -24 6144 5955 3166 178 49 77 chr9 13346486 13347965 -128923479 - L1MB1 LINE L1 -286 5882 4456 2608 239 36 61 chr9 13347975 13348044 -128923400 - L1MB1 LINE L1 -2751 3395 3326 2043 140 16 0 chr9 13348044 13348351 -128923093 - AluSx SINE Alu 0 312 1 2608 239 36 61 chr9 13348351 13348899 -128922545 - L1MB1 LINE L1 -2820 3326 2818 825 233 0 6 chr9 13348899 13349062 -128922382 - FAM SINE Alu -12 163 2 2608 239 36 61 chr9 13349062 13349613 -128921831 - L1MB1 LINE L1 -3328 2818 2255 1202 237 48 74 chr9 13349616 13349799 -128921645 + L1M4c LINE L1 1415 1601 -4783 213 39 0 0 chr9 13349799 13349825 -128921619 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1202 237 48 74 chr9 13349825 13350101 -128921343 + L1M4c LINE L1 1601 1862 -4522 235 253 44 33 chr9 13350268 13350359 -128921085 - L1MCb LINE L1 -4682 2063 1972 4176 233 58 46 chr9 13350360 13351274 -128920170 - L1MC3 LINE L1 -16 7769 6833 204 40 0 0 chr9 13351274 13351299 -128920145 + (TGG)n Simple_repeat Simple_repeat 1 25 0 4176 233 58 46 chr9 13351299 13351674 -128919770 - L1MC3 LINE L1 -952 6833 6464 358 207 24 24 chr9 13351682 13351764 -128919680 - L1MC3 LINE L1 -1402 6383 6302 1141 199 21 102 chr9 13351864 13352311 -128919133 - LTR34 LTR ERV1 -304 395 1 2635 199 55 25 chr9 13352349 13353113 -128918331 - LTR1B LTR ERV1 -1 784 1 2527 280 69 25 chr9 13353113 13353610 -128917834 - L1MCb LINE L1 -4851 1194 721 189 0 0 0 chr9 13353610 13353631 -128917813 + (TTG)n Simple_repeat Simple_repeat 1 21 0 2527 280 69 25 chr9 13353631 13354559 -128916885 - L1MCb LINE L1 -5324 721 3 994 323 61 23 chr9 13354592 13355066 -128916378 - L1MCc LINE L1 -5102 1321 830 1174 283 46 12 chr9 13355370 13355801 -128915643 - L1MCc LINE L1 -5948 475 30 252 409 42 42 chr9 13356116 13356329 -128915115 - L2 LINE L2 -19 3253 3041 27 29 0 0 chr9 13357407 13357441 -128914003 + AT_rich Low_complexity Low_complexity 1 34 0 4202 281 88 35 chr9 13357511 13361080 -128910364 - L1MD2 LINE L1 0 6428 2435 987 139 0 0 chr9 13361080 13361260 -128910184 + (TA)n Simple_repeat Simple_repeat 1 180 0 4202 281 88 35 chr9 13361260 13363728 -128907716 - L1MD2 LINE L1 -3993 2435 100 185 224 17 0 chr9 13364084 13364142 -128907302 + (TATATG)n Simple_repeat Simple_repeat 6 64 0 739 264 17 64 chr9 13364241 13364476 -128906968 - MER58A DNA MER1_type 0 224 1 24 0 0 0 chr9 13365371 13365395 -128906049 + AT_rich Low_complexity Low_complexity 1 24 0 270 381 116 28 chr9 13365750 13366112 -128905332 - L2 LINE L2 -411 2903 2510 203 406 0 0 chr9 13366244 13366313 -128905131 - MIR SINE MIR -188 74 6 25 95 0 0 chr9 13367299 13367373 -128904071 + AT_rich Low_complexity Low_complexity 1 74 0 240 35 0 0 chr9 13368981 13369010 -128902434 + (CA)n Simple_repeat Simple_repeat 1 29 0 205 200 0 22 chr9 13369247 13369292 -128902152 + CT-rich Low_complexity Low_complexity 3 46 0 1829 218 47 24 chr9 13369651 13370118 -128901326 + MLT1D LTR MaLR 28 505 0 239 304 94 22 chr9 13370625 13370849 -128900595 - HAL1 LINE L1 -295 2212 1973 416 325 25 15 chr9 13370950 13371150 -128900294 - HAL1 LINE L1 -749 1758 1557 21 36 0 0 chr9 13371180 13371208 -128900236 + AT_rich Low_complexity Low_complexity 1 28 0 254 306 75 48 chr9 13371989 13372136 -128899308 + L2 LINE L2 3122 3272 0 2557 163 2 0 chr9 13372781 13373204 -128898240 - THE1C-int LTR MaLR -1153 427 4 1400 193 76 25 chr9 13373207 13373564 -128897880 - THE1C LTR MaLR 0 375 1 1091 179 0 0 chr9 13373995 13374191 -128897253 + L1PBa LINE L1 3 198 -6665 * 9653 136 54 18 chr9 13374179 13375959 -128895485 + L1PBa LINE L1 617 2672 -4190 2296 82 7 0 chr9 13375959 13376252 -128895192 + AluY SINE Alu 1 295 -16 9653 136 54 18 chr9 13376252 13377000 -128894444 + L1PBa LINE L1 2672 3391 -3471 203 222 42 14 chr9 13378087 13378159 -128893285 + A-rich Low_complexity Low_complexity 5 78 0 257 0 30 0 chr9 13378491 13378524 -128892920 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2014 125 0 0 chr9 13378527 13378807 -128892637 - AluSg SINE Alu -30 280 1 5298 71 43 3 chr9 13379729 13380464 -128890980 - MER4E LTR ERV1 -1 765 1 24 32 0 0 chr9 13380502 13380533 -128890911 + AT_rich Low_complexity Low_complexity 1 31 0 578 190 35 81 chr9 13381994 13382168 -128889276 - LTR40b LTR ERVL -6 456 291 1431 302 42 30 chr9 13382170 13382697 -128888747 - REP3 LTR ERV -27 535 3 346 308 75 50 chr9 13382697 13382834 -128888610 - LTR40a LTR ERVL -172 347 207 1401 188 65 7 chr9 13382835 13383111 -128888333 + MSTB LTR MaLR 3 294 -132 1931 147 7 0 chr9 13383613 13383913 -128887531 + AluSx SINE Alu 11 312 0 731 256 31 0 chr9 13384364 13384587 -128886857 - L1M4 LINE L1 -2369 3777 3548 24 0 0 0 chr9 13384729 13384753 -128886691 + AT_rich Low_complexity Low_complexity 1 24 0 2289 91 3 0 chr9 13385247 13385544 -128885900 + AluSp SINE Alu 1 298 -15 810 237 0 29 chr9 13386233 13386406 -128885038 + AluJo SINE Alu 122 289 -23 427 206 153 24 chr9 13386422 13386592 -128884852 + LTR37A LTR ERV1 166 357 -69 704 270 49 85 chr9 13386611 13387162 -128884282 - L1M4 LINE L1 -2600 3546 3016 2054 139 6 30 chr9 13387162 13387494 -128883950 + THE1B LTR MaLR 1 324 -40 296 170 0 0 chr9 13387485 13387538 -128883906 - AluSg/x SINE Alu -116 184 132 * 805 158 0 0 chr9 13387538 13387671 -128883773 - AluJo/FLAM SINE Alu -169 133 1 990 191 0 62 chr9 13387671 13387896 -128883548 + THE1B LTR MaLR 154 364 0 396 291 7 20 chr9 13387899 13388047 -128883397 - L1M4 LINE L1 -3129 3017 2872 275 330 92 0 chr9 13388047 13388156 -128883288 + L2 LINE L2 1719 1837 -1477 1208 190 0 25 chr9 13388270 13388507 -128882937 - AluJb SINE Alu -16 296 66 313 285 29 81 chr9 13388623 13389185 -128882259 + L1MEd LINE L1 936 1357 -4774 21 0 0 0 chr9 13389611 13389632 -128881812 + AT_rich Low_complexity Low_complexity 1 21 0 230 109 16 47 chr9 13389847 13389911 -128881533 + (TA)n Simple_repeat Simple_repeat 1 62 0 965 342 18 10 chr9 13390667 13391062 -128880382 + LTR16A LTR ERVL 22 419 -31 386 271 60 26 chr9 13391510 13391661 -128879783 + L1MC4a LINE L1 5424 5579 -2229 1915 125 11 4 chr9 13391733 13392013 -128879431 - AluSx SINE Alu -30 282 1 975 74 5 58 chr9 13392013 13392203 -128879241 + (TCTCC)n Simple_repeat Simple_repeat 1 180 0 301 162 29 0 chr9 13392206 13392274 -128879170 + CT-rich Low_complexity Low_complexity 2 71 0 1349 201 56 26 chr9 13392291 13392472 -128878972 - AluJb SINE Alu 0 312 117 216 0 0 0 chr9 13392472 13392496 -128878948 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1349 201 56 26 chr9 13392496 13392617 -128878827 - AluJb SINE Alu -195 117 1 335 267 164 44 chr9 13392617 13393074 -128878370 + L1MC4a LINE L1 5844 6355 -1453 583 69 23 0 chr9 13393138 13393225 -128878219 - LTR19A LTR ERV1 -2 484 396 2038 172 79 0 chr9 13393235 13393676 -128877768 + L1MC2 LINE L1 5479 5954 -1831 1506 145 58 52 chr9 13393645 13393989 -128877455 + L1MB1 LINE L1 5819 6164 -4 * 394 313 10 10 chr9 13394250 13394458 -128876986 + L1MB1 LINE L1 5938 6145 -23 332 264 42 60 chr9 13394497 13394564 -128876880 + L1MC2 LINE L1 5971 6038 -306 10427 50 1 0 chr9 13394564 13396593 -128874851 - L1PA5 LINE L1 -15 6139 4081 332 264 42 60 chr9 13396593 13396692 -128874752 + L1MC2 LINE L1 6038 6134 -210 4106 213 70 19 chr9 13396729 13397852 -128873592 + L1MC3 LINE L1 6597 7777 -8 636 238 0 0 chr9 13397866 13397988 -128873456 + L1MC4 LINE L1 6712 6833 -1209 231 284 58 82 chr9 13398149 13398357 -128873087 + L1MC4 LINE L1 6903 7105 -937 250 250 135 10 chr9 13398642 13398738 -128872706 + MIR SINE MIR 154 261 -1 2493 91 17 0 chr9 13398993 13399344 -128872100 - L1PA10 LINE L1 0 6168 5812 180 172 0 0 chr9 13399667 13399696 -128871748 + MER5A DNA MER1_type 129 157 -32 408 301 28 23 chr9 13400428 13400604 -128870840 + MER5B DNA MER1_type 1 177 -1 1476 255 54 22 chr9 13401149 13401596 -128869848 - MLT1H1 LTR MaLR -3 552 92 1951 199 41 21 chr9 13401600 13402036 -128869408 + MER34 LTR ERV1 1 445 -97 2717 138 5 13 chr9 13402053 13402558 -128868886 - L1P4 LINE L1 -475 6394 5893 282 115 0 0 chr9 13402561 13402613 -128868831 + (T)n Simple_repeat Simple_repeat 1 52 0 308 351 25 25 chr9 13402656 13402895 -128868549 - L1 LINE L1 -1022 5124 4886 10541 245 38 28 chr9 13403184 13403458 -128867986 - L1P4 LINE L1 -1005 5844 5574 180 0 0 0 chr9 13403458 13403478 -128867966 + (TTG)n Simple_repeat Simple_repeat 1 20 0 10541 245 38 28 chr9 13403478 13407584 -128863860 - L1P4 LINE L1 -1275 5574 1336 734 317 49 7 chr9 13407632 13407916 -128863528 - L1P4 LINE L1 -6553 296 1 * 1232 195 47 12 chr9 13407915 13408253 -128863191 - L1 LINE L1 -1584 4562 4213 * 4037 106 7 5 chr9 13408239 13408817 -128862627 + L1P LINE L1 3884 4462 -1684 4167 155 70 36 chr9 13409838 13410703 -128860741 + MER4D LTR ERV1 1 895 -8 500 165 21 10 chr9 13410717 13410814 -128860630 + MER4A LTR ERV1 1 98 -566 1761 170 3 22 chr9 13410814 13411166 -128860278 + MER4A LTR ERV1 261 664 0 2871 105 165 10 chr9 13411168 13411494 -128859950 + MER4A-int LTR ERV1 1 275 -6323 221 0 0 33 chr9 13411494 13411524 -128859920 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2871 105 165 10 chr9 13411524 13411747 -128859697 + MER4A-int LTR ERV1 275 686 -5912 375 23 0 0 chr9 13411818 13411862 -128859582 + (TAAAA)n Simple_repeat Simple_repeat 2 45 0 604 256 50 5 chr9 13411928 13412186 -128859258 + MER4A-int LTR ERV1 1861 2161 -4170 3885 150 14 23 chr9 13412263 13412903 -128858541 + MER4A-int LTR ERV1 198 831 -5927 1335 137 29 72 chr9 13412934 13413211 -128858233 + MER4A-int LTR ERV1 924 1188 -5570 4006 104 60 8 chr9 13413222 13413926 -128857518 + MER4A-int LTR ERV1 1756 2495 -4103 1340 158 67 8 chr9 13413926 13414166 -128857278 - LTR8 LTR ERV1 -434 257 4 2535 161 74 21 chr9 13414168 13414892 -128856552 + MER4A-int LTR ERV1 2736 4140 -2536 324 169 34 0 chr9 13414889 13414948 -128856496 + MER4A-int LTR ERV1 3626 3686 -2912 * 6131 111 59 15 chr9 13414942 13415987 -128855457 + MER4A-int LTR ERV1 3837 4927 -1671 9555 122 51 18 chr9 13416087 13417742 -128853702 + MER4A-int LTR ERV1 4876 6584 -14 519 134 31 21 chr9 13417761 13417858 -128853586 + MER4A LTR ERV1 1 98 -566 1757 160 0 23 chr9 13417909 13418209 -128853235 + MER4A LTR ERV1 372 664 0 285 322 62 17 chr9 13418316 13418493 -128852951 + MIR SINE MIR 78 262 0 1195 220 68 153 chr9 13418649 13418871 -128852573 - L1MC4 LINE L1 -959 7083 6844 419 102 0 159 chr9 13418871 13418959 -128852485 + MER84 LTR ERVI 1 74 -433 2793 175 22 0 chr9 13418959 13419450 -128851994 + MER84 LTR ERV1 2 503 -4 1195 220 68 153 chr9 13419450 13419820 -128851624 - L1MC4 LINE L1 -1196 6846 6461 1458 120 9 0 chr9 13420213 13420446 -128850998 - L1MA1 LINE L1 0 6302 6068 23 0 0 0 chr9 13420457 13420480 -128850964 + AT_rich Low_complexity Low_complexity 1 23 0 956 154 0 70 chr9 13421778 13421992 -128849452 + L1MA8 LINE L1 6085 6283 -8 437 117 0 0 chr9 13421918 13421995 -128849449 + L1MA8 LINE L1 6210 6286 -5 336 155 99 14 chr9 13422023 13422094 -128849350 + L1ME2 LINE L1 5995 6071 -93 1500 209 118 112 chr9 13422187 13422934 -128848510 - LTR1B LTR ERV1 -75 751 1 25 0 0 0 chr9 13423084 13423109 -128848335 + AT_rich Low_complexity Low_complexity 1 25 0 1676 166 18 0 chr9 13423244 13423546 -128847898 - AluJb SINE Alu 0 307 1 763 219 0 114 chr9 13424295 13424523 -128846921 - MLT1A1 LTR MaLR 0 365 164 645 177 16 16 chr9 13424573 13424697 -128846747 + MLT1A1 LTR MaLR 230 353 -12 1949 181 36 32 chr9 13425142 13425691 -128845753 + MLT2A2 LTR ERVL 1 554 0 336 329 82 37 chr9 13425752 13425995 -128845449 - MIR SINE MIR -2 260 7 380 353 27 0 chr9 13426211 13426361 -128845083 - MIR SINE MIR -17 245 92 278 254 42 14 chr9 13426704 13426775 -128844669 + MIR SINE MIR 35 107 -155 240 177 32 65 chr9 13426815 13426877 -128844567 + MIR SINE MIR 201 260 -2 * 267 202 95 12 chr9 13426870 13426954 -128844490 + MIR SINE MIR 99 189 -73 496 188 0 0 chr9 13426975 13427055 -128844389 + Charlie5 DNA MER1_type 10 89 -2523 229 250 0 0 chr9 13427859 13427907 -128843537 + MLT1K LTR MaLR 202 249 -339 24 0 0 0 chr9 13429682 13429706 -128841738 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr9 13430176 13430205 -128841239 + AT_rich Low_complexity Low_complexity 1 29 0 821 221 16 112 chr9 13430640 13430889 -128840555 + MER8 DNA MER2_type 15 239 0 403 330 167 19 chr9 13431363 13431939 -128839505 - L1M4 LINE L1 -2263 3883 3223 222 37 0 0 chr9 13432002 13432029 -128839415 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 856 236 67 18 chr9 13432314 13432635 -128838809 + MSTD LTR MaLR 1 396 0 189 318 101 23 chr9 13432924 13433053 -128838391 - MIR SINE MIR -110 152 14 180 288 29 93 chr9 13433093 13433232 -128838212 + L2 LINE L2 3160 3289 -24 321 26 0 0 chr9 13434378 13434416 -128837028 + (TTA)n Simple_repeat Simple_repeat 2 39 0 375 43 0 0 chr9 13434420 13434466 -128836978 - L1PA11 LINE L1 -41 6133 6088 22 0 0 0 chr9 13435215 13435237 -128836207 + AT_rich Low_complexity Low_complexity 1 22 0 30 0 0 0 chr9 13436805 13436835 -128834609 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr9 13437973 13438001 -128833443 + AT_rich Low_complexity Low_complexity 1 28 0 2364 91 0 0 chr9 13438379 13438686 -128832758 + AluY SINE Alu 1 307 -4 2297 167 10 61 chr9 13439531 13440039 -128831405 - MER66B LTR ERV1 0 486 5 12482 244 37 34 chr9 13440042 13440539 -128830905 - MER66B-int LTR ERV1 0 6676 6182 2377 75 3 0 chr9 13440539 13440845 -128830599 - AluY SINE Alu -4 307 1 12482 244 37 34 chr9 13440845 13447397 -128824047 - MER66B-int LTR ERV1 -494 6182 1210 539 297 13 19 chr9 13447488 13447643 -128823801 - MER66B-int LTR ERV1 -3574 3102 2949 2920 228 79 27 chr9 13447738 13448514 -128822930 - MER66B-int LTR ERV1 -5571 1105 290 1354 163 105 25 chr9 13448517 13448794 -128822650 + THE1C LTR MaLR 77 375 0 2056 200 8 64 chr9 13448980 13449465 -128821979 - MER66B LTR ERV1 -4 482 25 345 294 49 14 chr9 13449875 13450018 -128821426 + MIR SINE MIR 101 248 -14 35 63 0 0 chr9 13450028 13450091 -128821353 + AT_rich Low_complexity Low_complexity 1 63 0 28 29 0 0 chr9 13450320 13450355 -128821089 + AT_rich Low_complexity Low_complexity 1 35 0 250 59 78 0 chr9 13450429 13450480 -128820964 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 2268 228 51 2 chr9 13451490 13452038 -128819406 - L1MD3 LINE L1 -20 7975 7401 354 289 0 0 chr9 13452041 13452124 -128819320 - MLT1F1 LTR MaLR -448 119 37 34 72 0 0 chr9 13452257 13452326 -128819118 + AT_rich Low_complexity Low_complexity 1 69 0 263 323 234 6 chr9 13452414 13452572 -128818872 + MIR SINE MIR 51 244 -18 225 83 0 0 chr9 13452868 13452904 -128818540 + (CATAA)n Simple_repeat Simple_repeat 1 36 0 198 0 0 0 chr9 13453982 13454004 -128817440 + (A)n Simple_repeat Simple_repeat 1 22 0 1937 132 43 35 chr9 13454814 13455186 -128816258 - THE1C LTR MaLR 0 375 1 207 0 0 0 chr9 13455352 13455375 -128816069 + (TA)n Simple_repeat Simple_repeat 2 24 0 207 0 0 0 chr9 13455374 13455397 -128816047 + (GA)n Simple_repeat Simple_repeat 2 24 0 35 54 0 0 chr9 13455845 13455901 -128815543 + AT_rich Low_complexity Low_complexity 1 56 0 213 414 0 0 chr9 13456811 13456922 -128814522 + MIR SINE MIR 34 144 -64 197 278 14 69 chr9 13457118 13457190 -128814254 - L2 LINE L2 -5 3267 3200 799 200 78 6 chr9 13460338 13460518 -128810926 - MLT1A1 LTR MaLR 0 365 173 208 389 14 22 chr9 13460654 13460793 -128810651 - MER5A DNA MER1_type -1 188 51 327 296 72 32 chr9 13461256 13461381 -128810063 - MIR SINE MIR -67 195 66 386 282 8 24 chr9 13461697 13461821 -128809623 + (CATA)n Simple_repeat Simple_repeat 2 123 0 365 293 57 21 chr9 13463498 13463638 -128807806 + LTR33 LTR ERVL 126 270 -251 30 45 0 0 chr9 13464383 13464427 -128807017 + AT_rich Low_complexity Low_complexity 1 44 0 2371 180 101 41 chr9 13464447 13465154 -128806290 + LTR28 LTR ERV1 1 634 -2 406 296 113 0 chr9 13465620 13465762 -128805682 + MIR SINE MIR 3 160 -102 245 164 36 0 chr9 13465992 13466047 -128805397 + (TA)n Simple_repeat Simple_repeat 2 58 0 2252 90 14 0 chr9 13466093 13466383 -128805061 - AluY SINE Alu -17 294 1 254 287 28 46 chr9 13466600 13466708 -128804736 + MIR SINE MIR 56 161 -101 390 309 73 36 chr9 13466728 13466948 -128804496 - L2 LINE L2 0 3313 3086 24 53 0 0 chr9 13467776 13467814 -128803630 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr9 13468298 13468319 -128803125 + AT_rich Low_complexity Low_complexity 1 21 0 216 296 102 11 chr9 13468720 13468808 -128802636 - MIR SINE MIR -87 175 80 221 0 0 33 chr9 13469452 13469482 -128801962 + (TATAA)n Simple_repeat Simple_repeat 5 33 0 21 36 0 0 chr9 13469484 13469512 -128801932 + AT_rich Low_complexity Low_complexity 1 28 0 424 34 0 17 chr9 13470437 13470496 -128800948 - L1PA3 LINE L1 -5 6150 6093 21 57 0 0 chr9 13470645 13470680 -128800764 + AT_rich Low_complexity Low_complexity 1 35 0 25 0 0 0 chr9 13470984 13471009 -128800435 + AT_rich Low_complexity Low_complexity 1 25 0 185 350 70 40 chr9 13471082 13471282 -128800162 + MIR SINE MIR 2 207 -55 22 0 0 0 chr9 13472501 13472523 -128798921 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr9 13472546 13472574 -128798870 + AT_rich Low_complexity Low_complexity 1 28 0 344 172 83 0 chr9 13472633 13472790 -128798654 + (TATAA)n Simple_repeat Simple_repeat 5 174 0 509 198 11 88 chr9 13474141 13474317 -128797127 + MER66A LTR ERV1 97 303 -251 180 0 0 0 chr9 13475320 13475340 -128796104 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 513 370 35 0 chr9 13475826 13476056 -128795388 - ERVL LTR ERVL -426 5338 5101 1950 207 20 47 chr9 13476189 13476633 -128794811 - MSTB1 LTR MaLR 0 432 1 483 287 57 24 chr9 13476802 13477136 -128794308 + L1ME LINE L1 3860 4204 -1942 212 224 15 0 chr9 13477186 13477253 -128794191 + GA-rich Low_complexity Low_complexity 3 70 0 280 355 79 14 chr9 13477618 13477832 -128793612 - LTR16C LTR ERVL 0 491 264 225 282 24 0 chr9 13478212 13478297 -128793147 + L1ME LINE L1 4757 4843 -1303 250 104 21 0 chr9 13478785 13478833 -128792611 + L1MD1 LINE L1 6194 6242 0 242 319 9 0 chr9 13478839 13478952 -128792492 + L1ME LINE L1 5333 5446 -718 2605 30 3 0 chr9 13478954 13479256 -128792188 + AluY SINE Alu 1 303 -8 867 180 85 0 chr9 13479954 13480143 -128791301 - L1MA4 LINE L1 -11 6289 6085 457 299 48 23 chr9 13480234 13480669 -128790775 - L1MEc LINE L1 -2887 3495 3050 519 265 53 35 chr9 13480700 13480870 -128790574 - MIR SINE MIR -60 202 30 1241 50 25 0 chr9 13481358 13481517 -128789927 - L1PA4 LINE L1 -2 6153 5991 39 60 0 0 chr9 13481559 13481626 -128789818 + AT_rich Low_complexity Low_complexity 1 67 0 1562 184 63 25 chr9 13481770 13482134 -128789310 + MLT1C LTR MaLR 89 466 -1 21 0 0 0 chr9 13482389 13482410 -128789034 + AT_rich Low_complexity Low_complexity 1 21 0 10216 30 1 10 chr9 13483785 13485777 -128785667 + L1PA4 LINE L1 4168 6151 -4 189 0 0 0 chr9 13485787 13485808 -128785636 + (TAAAAA)n Simple_repeat Simple_repeat 3 23 0 447 341 29 6 chr9 13485831 13486004 -128785440 + LTR16A1 LTR ERVL 226 402 -55 547 313 110 19 chr9 13486666 13487157 -128784287 - L1MEc LINE L1 -4902 1533 947 188 0 74 0 chr9 13487706 13487733 -128783711 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 330 306 24 47 chr9 13488263 13488433 -128783011 - MLT1J2 LTR MaLR -33 417 252 978 199 11 0 chr9 13488465 13488641 -128782803 + U2 snRNA snRNA 1 178 -10 625 82 49 8 chr9 13488671 13488793 -128782651 + GA-rich Low_complexity Low_complexity 2 128 0 2579 241 41 4 chr9 13489369 13490128 -128781316 + L1MC1 LINE L1 4540 5326 -820 951 210 0 5 chr9 13490129 13490315 -128781129 + AluJb SINE Alu 128 312 0 4943 172 45 30 chr9 13490319 13490901 -128780543 + L1MC1 LINE L1 5293 5899 -434 2833 118 13 45 chr9 13490901 13491369 -128780075 - MLT2A2 LTR ERVL 0 453 1 4943 172 45 30 chr9 13491369 13491801 -128779643 + L1MC1 LINE L1 5899 6323 -10 213 39 0 0 chr9 13491801 13491827 -128779617 + (TAAAA)n Simple_repeat Simple_repeat 1 26 0 375 283 31 102 chr9 13493147 13493373 -128778071 - HAL1 LINE L1 -938 1569 1360 349 337 26 26 chr9 13494183 13494376 -128777068 - L1MEc LINE L1 -4435 1961 1769 26 64 0 0 chr9 13494793 13494840 -128776604 + AT_rich Low_complexity Low_complexity 1 47 0 1047 259 58 10 chr9 13495236 13495693 -128775751 - MER92B LTR ERV1 -2 552 1 1673 204 7 3 chr9 13495784 13496093 -128775351 + AluJo SINE Alu 1 310 -2 245 29 29 0 chr9 13496102 13496136 -128775308 + (GAA)n Simple_repeat Simple_repeat 3 37 0 402 271 54 54 chr9 13496831 13497089 -128774355 + MER34B LTR ERV1 304 561 -4 446 251 53 16 chr9 13497100 13497287 -128774157 - MER67C LTR ERV1 -19 691 498 238 281 70 8 chr9 13497373 13497501 -128773943 - MER67C LTR ERV1 -538 172 37 365 109 0 0 chr9 13497730 13497785 -128773659 + MER89 LTR ERV1 1 55 -504 1460 120 20 83 chr9 13497787 13498088 -128773356 - MER52C LTR ERV1 0 1278 997 1438 212 70 47 chr9 13498076 13498620 -128772824 - MER52A LTR ERV1 -549 729 1 * 1713 214 96 43 chr9 13498650 13499117 -128772327 + MER89 LTR ERV1 68 559 0 1646 187 48 3 chr9 13499214 13499588 -128771856 + L1 LINE L1 3104 3494 -2652 25 0 0 0 chr9 13499717 13499742 -128771702 + AT_rich Low_complexity Low_complexity 1 25 0 201 94 0 0 chr9 13500132 13500164 -128771280 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 1874 154 146 11 chr9 13500304 13500681 -128770763 - MSTA LTR MaLR 0 428 1 1551 63 14 5 chr9 13502205 13502426 -128769018 - L1PA13 LINE L1 -1 6162 5940 264 303 0 26 chr9 13502648 13502724 -128768720 - tRNA-Glu-GAG tRNA tRNA 0 75 2 2063 199 101 81 chr9 13502724 13503454 -128767990 - MER31-int LTR ERV1 -5115 1216 472 422 295 7 14 chr9 13503454 13503593 -128767851 - LTR29 LTR ERV1 -252 370 233 351 253 273 5 chr9 13503603 13503749 -128767695 - MER39 LTR ERV1 -574 133 1 443 257 0 9 chr9 13503750 13503863 -128767581 - MER67D LTR ERV1 -402 112 1 1268 268 80 14 chr9 13503900 13504230 -128767214 - MER31-int LTR ERV1 -1135 3801 3434 189 0 0 0 chr9 13504230 13504251 -128767193 + (TTCA)n Simple_repeat Simple_repeat 4 24 0 1268 268 80 14 chr9 13504251 13504356 -128767088 - MER31-int LTR ERV1 -1502 3434 3337 803 249 42 54 chr9 13505132 13505466 -128765978 - MER31-int LTR ERV1 -1883 3053 2724 * 1741 251 101 70 chr9 13505454 13506837 -128764607 - MER31-int LTR ERV1 -2325 2611 1095 1718 216 15 48 chr9 13506837 13507295 -128764149 + LTR47B LTR ERVL 1 443 0 1741 251 101 70 chr9 13507295 13507665 -128763779 - MER31-int LTR ERV1 -3841 1095 738 2154 135 28 0 chr9 13507900 13508226 -128763218 + MER1B DNA MER1_type 2 336 -1 2210 92 7 3 chr9 13509015 13509320 -128762124 - AluY SINE Alu -5 306 1 876 214 74 72 chr9 13510290 13510762 -128760682 - MER92C LTR ERV1 -2 552 1 288 77 0 0 chr9 13511920 13511959 -128759485 + (TCTA)n Simple_repeat Simple_repeat 3 41 0 237 336 67 51 chr9 13512143 13512593 -128758851 - HAL1b LINE L1 -661 687 231 275 284 153 34 chr9 13512660 13512794 -128758650 + MIR SINE MIR 63 224 -38 884 206 44 136 chr9 13512794 13513206 -128758238 + MLT1A2 LTR MaLR 1 374 0 275 284 153 34 chr9 13513206 13513247 -128758197 + MIR SINE MIR 224 259 -3 22 70 0 0 chr9 13513353 13513396 -128758048 + AT_rich Low_complexity Low_complexity 1 43 0 211 217 0 22 chr9 13513505 13513551 -128757893 + CT-rich Low_complexity Low_complexity 4 48 0 222 118 0 0 chr9 13514602 13514636 -128756808 + (TG)n Simple_repeat Simple_repeat 2 35 0 254 336 66 69 chr9 13514820 13515183 -128756261 + MLT1J LTR MaLR 5 366 -145 556 270 152 5 chr9 13516367 13516571 -128754873 - MIR SINE MIR -28 234 1 207 0 0 0 chr9 13516926 13516949 -128754495 + (CA)n Simple_repeat Simple_repeat 2 24 0 278 215 13 0 chr9 13517823 13517902 -128753542 + (TCCA)n Simple_repeat Simple_repeat 2 81 0 391 244 109 67 chr9 13517915 13518108 -128753336 - L2 LINE L2 0 3313 3113 1151 120 17 0 chr9 13518109 13518284 -128753160 + L1MA9 LINE L1 5986 6163 -149 390 129 0 14 chr9 13518285 13518355 -128753089 + L1MA9 LINE L1 6239 6307 -5 2120 135 0 0 chr9 13518470 13518782 -128752662 - AluSx SINE Alu 0 312 1 589 312 18 52 chr9 13518782 13519064 -128752380 - L2 LINE L2 -263 3050 2777 901 247 55 105 chr9 13519144 13519634 -128751810 - MLT1G1 LTR MaLR -115 452 1 1178 308 108 31 chr9 13519635 13519789 -128751655 - L2 LINE L2 -527 2787 2646 2314 88 3 3 chr9 13519789 13520097 -128751347 + AluSc SINE Alu 1 308 -1 1178 308 108 31 chr9 13520097 13520589 -128750855 - L2 LINE L2 -668 2646 2091 21 0 0 0 chr9 13521238 13521259 -128750185 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr9 13521345 13521373 -128750071 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr9 13521607 13521628 -128749816 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 13523124 13523146 -128748298 + AT_rich Low_complexity Low_complexity 1 22 0 235 374 40 52 chr9 13525116 13525290 -128746154 + L2 LINE L2 2175 2346 -968 337 260 75 55 chr9 13526700 13526846 -128744598 - MIR SINE MIR -48 214 66 581 175 42 121 chr9 13527336 13527502 -128743942 + MER2 DNA MER2_type 188 340 -5 1010 252 119 7 chr9 13527550 13527852 -128743592 - L2 LINE L2 -525 2789 2454 250 333 0 43 chr9 13527940 13528033 -128743411 - MIR SINE MIR -125 137 49 21 36 0 0 chr9 13528540 13528568 -128742876 + AT_rich Low_complexity Low_complexity 1 28 0 2155 105 0 26 chr9 13528749 13529062 -128742382 + AluSg SINE Alu 6 310 0 24 32 0 0 chr9 13529099 13529130 -128742314 + AT_rich Low_complexity Low_complexity 1 31 0 1623 137 19 0 chr9 13529130 13529401 -128742043 - L1PB1 LINE L1 0 6151 5876 3696 153 15 1 chr9 13529403 13530380 -128741064 - L1PB1 LINE L1 -376 5775 4792 1234 196 0 15 chr9 13530376 13530641 -128740803 + L1PB1 LINE L1 4545 4805 -1341 * 983 243 86 86 chr9 13530978 13531422 -128740022 - L1MD2 LINE L1 -218 6141 5698 3619 249 66 59 chr9 13531426 13532701 -128738743 + L1M2a LINE L1 4 1145 -6023 5142 228 38 11 chr9 13532734 13534741 -128736703 + L1M2a LINE L1 1618 3679 -3488 677 100 46 15 chr9 13534735 13534865 -128736579 + L1M LINE L1 5295 5428 -872 * 1179 204 127 8 chr9 13535095 13535457 -128735987 - L1 LINE L1 -1510 4636 4232 835 281 70 23 chr9 13535830 13536132 -128735312 + L2 LINE L2 2997 3312 -1 413 315 73 69 chr9 13536451 13536505 -128734939 - MIR SINE MIR -1 261 209 2060 118 0 3 chr9 13536505 13536820 -128734624 - AluSx SINE Alu 0 314 1 413 315 73 69 chr9 13536820 13537023 -128734421 - MIR SINE MIR -53 209 1 227 301 169 0 chr9 13537048 13537131 -128734313 - MIR3 SINE MIR -17 191 95 432 0 0 0 chr9 13537361 13537409 -128734035 + (CA)n Simple_repeat Simple_repeat 1 48 0 692 277 25 22 chr9 13538061 13538335 -128733109 - L1MD2 LINE L1 -15 6344 6070 * 1696 230 43 22 chr9 13538304 13538807 -128732637 - L1MD2 LINE L1 -88 6076 5551 266 87 22 0 chr9 13539759 13539805 -128731639 + (CCTA)n Simple_repeat Simple_repeat 1 47 0 548 336 6 6 chr9 13540820 13541013 -128730431 - MIR SINE MIR -39 223 33 1649 177 13 13 chr9 13541035 13541335 -128730109 - AluJo SINE Alu -12 300 1 915 153 17 17 chr9 13541641 13541818 -128729626 + L1MC1 LINE L1 6156 6332 -1 814 238 0 0 chr9 13542341 13542513 -128728931 + FAM SINE Alu 1 172 -3 24 0 0 0 chr9 13542513 13542537 -128728907 + AT_rich Low_complexity Low_complexity 1 24 0 203 208 19 0 chr9 13542706 13542759 -128728685 + (TA)n Simple_repeat Simple_repeat 2 55 0 1919 107 17 20 chr9 13542854 13543154 -128728290 - AluSg1 SINE Alu -10 299 1 1123 47 0 0 chr9 13543331 13543460 -128727984 + AluY SINE Alu 1 129 -182 2488 38 3 0 chr9 13543675 13543965 -128727479 + AluY SINE Alu 1 291 -20 46 33 0 0 chr9 13544943 13545003 -128726441 + AT_rich Low_complexity Low_complexity 1 60 0 2084 97 16 10 chr9 13545387 13545695 -128725749 + AluY SINE Alu 1 310 -1 24 0 0 0 chr9 13545785 13545809 -128725635 + AT_rich Low_complexity Low_complexity 1 24 0 1161 231 98 34 chr9 13546189 13546575 -128724869 + MER92A LTR ERV1 2 412 0 264 298 60 66 chr9 13546845 13547147 -128724297 + MER92A-int LTR ERV1 198 497 -4439 258 410 18 6 chr9 13547933 13548099 -128723345 + MER31-int LTR ERV1 2539 2706 -4095 1573 93 12 57 chr9 13548443 13548690 -128722754 - AluSp SINE Alu -14 299 64 397 297 67 68 chr9 13548889 13549511 -128721933 + MER31-int LTR ERV1 3237 4948 -3309 231 36 0 0 chr9 13549610 13549638 -128721806 + (A)n Simple_repeat Simple_repeat 1 28 0 389 320 81 12 chr9 13549785 13549957 -128721487 + MER31-int LTR ERV1 751 934 -4002 3298 35 4 0 chr9 13550091 13551053 -128720391 - L1PA4 LINE L1 -1 6154 5037 * 4037 39 0 0 chr9 13551052 13551542 -128719902 + L1PA4 LINE L1 4548 5037 -1109 1513 214 14 82 chr9 13552014 13552429 -128719015 + MLT1B LTR MaLR 1 387 -3 1605 261 5 19 chr9 13553969 13554379 -128717065 + MER92A LTR ERV1 1 404 -8 3028 151 20 2 chr9 13554953 13555456 -128715988 + MER41E LTR ERV1 1 512 0 232 271 0 0 chr9 13555475 13555534 -128715910 - MLT1I LTR MaLR 0 409 351 300 247 180 34 chr9 13556072 13556250 -128715194 + MLT1L LTR MaLR 405 608 -7 23 0 0 0 chr9 13556305 13556328 -128715116 + AT_rich Low_complexity Low_complexity 1 23 0 1701 177 126 26 chr9 13556373 13556762 -128714682 + MSTA LTR MaLR 1 428 0 6880 151 166 39 chr9 13556764 13558164 -128713280 + MSTA-int LTR MaLR 3 1580 0 1697 180 136 18 chr9 13558164 13558547 -128712897 + MSTA LTR MaLR 1 428 0 354 45 0 0 chr9 13559200 13559244 -128712200 + (TC)n Simple_repeat Simple_repeat 1 44 0 342 0 0 0 chr9 13559243 13559281 -128712163 + (CA)n Simple_repeat Simple_repeat 1 38 0 * 276 284 11 11 chr9 13560063 13560158 -128711286 + CT-rich Low_complexity Low_complexity 2 96 0 531 309 25 6 chr9 13560875 13561037 -128710407 - MIR SINE MIR -50 212 48 21 0 0 0 chr9 13561145 13561166 -128710278 + AT_rich Low_complexity Low_complexity 1 21 0 790 294 97 98 chr9 13561285 13562471 -128708973 - L2 LINE L2 -60 3253 2084 520 206 0 66 chr9 13562568 13562704 -128708740 + MLT1C LTR MaLR 11 137 -330 255 301 0 0 chr9 13562705 13562788 -128708656 + MLT1D LTR MaLR 414 496 -9 24 0 0 0 chr9 13563692 13563716 -128707728 + AT_rich Low_complexity Low_complexity 1 24 0 251 234 0 16 chr9 13563727 13563791 -128707653 - L1ME3A LINE L1 -35 6135 6073 33 43 0 0 chr9 13563883 13563930 -128707514 + AT_rich Low_complexity Low_complexity 1 47 0 289 300 0 0 chr9 13563942 13564042 -128707402 - L1M4 LINE L1 -1817 4329 4230 2123 178 28 30 chr9 13564753 13565186 -128706258 + MSTB1 LTR MaLR 1 432 0 383 222 51 51 chr9 13565421 13565538 -128705906 + LTR16C LTR ERVL 316 432 -59 321 26 0 0 chr9 13565604 13565642 -128705802 + (TA)n Simple_repeat Simple_repeat 1 38 0 429 109 0 0 chr9 13566215 13566279 -128705165 + (TA)n Simple_repeat Simple_repeat 1 64 0 1372 208 13 35 chr9 13568092 13568405 -128703039 - AluJo SINE Alu -6 306 1 21 82 0 0 chr9 13568520 13568569 -128702875 + AT_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr9 13569053 13569074 -128702370 + AT_rich Low_complexity Low_complexity 1 21 0 2818 68 32 20 chr9 13569710 13570273 -128701171 + L1PA5 LINE L1 5201 6141 -13 1307 117 40 0 chr9 13570274 13570497 -128700947 + L1PB1 LINE L1 5362 5592 -559 2190 55 0 0 chr9 13570500 13570773 -128700671 - L1PA8 LINE L1 0 6172 5900 1179 142 0 0 chr9 13570783 13570966 -128700478 + L1PB1 LINE L1 5796 5978 -173 505 42 0 0 chr9 13570968 13571039 -128700405 + L1PB1 LINE L1 6079 6149 -2 264 408 22 6 chr9 13571056 13571235 -128700209 - LTR16C LTR ERVL -179 312 131 2117 121 0 3 chr9 13571611 13571918 -128699526 + AluSg SINE Alu 1 306 -4 1282 253 110 22 chr9 13572161 13572901 -128698543 + L1ME2 LINE L1 5325 6145 -19 2305 65 3 3 chr9 13573022 13573314 -128698130 + AluY SINE Alu 1 292 -19 231 287 124 0 chr9 13573345 13573547 -128697897 + L1M4 LINE L1 2159 2385 -3761 415 187 0 44 chr9 13573745 13573836 -128697608 - MLT1E2 LTR MaLR -453 173 87 1044 93 35 6 chr9 13573853 13574025 -128697419 - L1MA6 LINE L1 0 6300 6124 1804 120 94 7 chr9 13574090 13574389 -128697055 + THE1A LTR MaLR 31 355 0 442 202 10 10 chr9 13574391 13574495 -128696949 - L1MA6 LINE L1 -208 6092 5989 684 106 9 0 chr9 13574511 13574624 -128696820 - L1MC3 LINE L1 -746 7039 6926 969 252 38 33 chr9 13574690 13575254 -128696190 - L1ME LINE L1 -580 5586 5029 507 217 89 56 chr9 13575271 13575443 -128696001 - L1 LINE L1 -1194 4952 4776 343 191 71 12 chr9 13575468 13575552 -128695892 + MIR SINE MIR 140 228 -34 825 103 0 0 chr9 13576747 13576863 -128694581 - L1P LINE L1 -4481 1665 1550 20781 47 7 2 chr9 13576863 13580244 -128691200 + L1PA5 LINE L1 2776 6148 -6 1670 202 124 5 chr9 13581002 13581413 -128690031 + MLT1C LTR MaLR 1 460 -7 3219 130 4 103 chr9 13581886 13582563 -128688881 + MER4B LTR ERV1 1 610 0 1112 110 0 19 chr9 13582901 13583055 -128688389 - AluSq/x SINE Alu -162 151 1 718 306 31 9 chr9 13583219 13583448 -128687996 - MIR SINE MIR -22 240 7 3281 66 0 2 chr9 13583725 13584149 -128687295 + L1PA7 LINE L1 5728 6150 -4 2393 301 90 28 chr9 13584311 13585534 -128685910 - L1MEc LINE L1 -5063 1333 35 283 270 0 0 chr9 13586251 13586314 -128685130 - MER5A DNA MER1_type -120 69 7 2558 134 44 2 chr9 13586675 13587084 -128684360 - MSTA LTR MaLR -2 426 1 5210 166 35 27 chr9 13587366 13587432 -128684012 - L1MA8 LINE L1 -3 6288 6224 508 43 145 0 chr9 13587432 13587501 -128683943 + MADE1 DNA Mariner 2 80 0 5210 166 35 27 chr9 13587501 13588916 -128682528 - L1MA8 LINE L1 -67 6224 4802 5686 66 4 0 chr9 13590329 13591069 -128680375 - L1PA8 LINE L1 -6 6166 5424 21 0 0 0 chr9 13591430 13591451 -128679993 + AT_rich Low_complexity Low_complexity 1 21 0 756 65 0 0 chr9 13591954 13592061 -128679383 + (TCTA)n Simple_repeat Simple_repeat 4 110 0 25 90 0 0 chr9 13592087 13592154 -128679290 + AT_rich Low_complexity Low_complexity 1 67 0 23 0 0 0 chr9 13592221 13592244 -128679200 + AT_rich Low_complexity Low_complexity 1 23 0 42390 36 21 3 chr9 13592583 13598621 -128672823 - L1PA3 LINE L1 0 6155 3 415 216 62 0 chr9 13598861 13598958 -128672486 - L1ME1 LINE L1 -190 6256 6154 336 216 36 33 chr9 13598963 13599094 -128672350 - L1ME1 LINE L1 -680 5774 5643 680 194 18 18 chr9 13599094 13599264 -128672180 - L1MA4 LINE L1 -5 6295 6126 480 221 55 21 chr9 13599271 13599416 -128672028 - L1M3f LINE L1 -5164 164 15 3340 224 53 99 chr9 13599428 13600193 -128671251 - L1ME1 LINE L1 -783 5643 4844 2983 114 16 5 chr9 13600193 13600630 -128670814 - MLT2A1 LTR ERVL -2 442 1 3340 224 53 99 chr9 13600630 13601671 -128669773 - L1ME1 LINE L1 -1582 4844 3921 1920 151 0 7 chr9 13601808 13602119 -128669325 - AluSx SINE Alu 0 309 1 548 199 7 28 chr9 13602180 13602321 -128669123 - L1ME1 LINE L1 -4474 1952 1815 7149 183 31 6 chr9 13602324 13602737 -128668707 + L1 LINE L1 3566 3967 -2179 6244 113 25 39 chr9 13602737 13603759 -128667685 + LTR13 LTR ERVK 1 1007 0 7149 183 31 6 chr9 13603759 13604268 -128667176 + L1 LINE L1 3967 4462 -1684 216 0 0 0 chr9 13604268 13604292 -128667152 + (CA)n Simple_repeat Simple_repeat 2 25 0 7149 183 31 6 chr9 13604292 13604844 -128666600 + L1 LINE L1 4462 5078 -1068 560 133 0 0 chr9 13604946 13605044 -128666400 + L1MA4 LINE L1 6198 6295 -5 990 198 60 16 chr9 13605071 13605387 -128666057 - L1ME1 LINE L1 -4547 1879 1413 283 259 0 0 chr9 13605477 13605535 -128665909 - HsTC2 DNA Tc2 -1747 151 94 207 0 0 0 chr9 13605630 13605653 -128665791 + (TTG)n Simple_repeat Simple_repeat 2 24 0 3281 78 39 0 chr9 13605761 13606197 -128665247 + MLT2A2 LTR ERVL 1 453 0 27 29 0 0 chr9 13606257 13606291 -128665153 + AT_rich Low_complexity Low_complexity 1 34 0 506 245 32 16 chr9 13606394 13606582 -128664862 - MER69 DNA AcHobo -4 2522 2332 232 324 0 0 chr9 13606583 13606651 -128664793 - MER69 DNA AcHobo -2454 72 5 257 369 80 23 chr9 13606815 13606991 -128664453 - MIR3 SINE MIR -7 201 16 182 386 10 20 chr9 13609005 13609106 -128662338 + MER5A DNA MER1_type 45 144 -45 638 199 118 39 chr9 13609129 13609380 -128662064 - Charlie2 DNA MER1_type -10 2852 2567 1957 46 0 4 chr9 13609380 13609619 -128661825 + AluY SINE Alu 74 311 0 638 199 118 39 chr9 13609619 13609698 -128661746 - Charlie2 DNA MER1_type -295 2567 2496 591 254 40 22 chr9 13609718 13609993 -128661451 - L1MC5 LINE L1 -53 7908 7629 711 186 124 11 chr9 13610119 13610296 -128661148 + MER3 DNA MER1_type 5 201 -8 920 247 69 10 chr9 13610386 13610690 -128660754 - L1MC5 LINE L1 -535 7426 7105 488 239 26 0 chr9 13610691 13610804 -128660640 + FLAM_A SINE Alu 1 116 -17 210 128 0 0 chr9 13610809 13610848 -128660596 + (GA)n Simple_repeat Simple_repeat 1 39 0 528 228 35 14 chr9 13610848 13610993 -128660451 - L1MC5 LINE L1 -843 7118 6971 2310 97 0 10 chr9 13611008 13611317 -128660127 - AluY SINE Alu -5 306 1 236 340 53 44 chr9 13613517 13613723 -128657721 + L2 LINE L2 1739 1946 -1368 254 313 21 0 chr9 13613819 13613915 -128657529 + L2 LINE L2 1974 2071 -1243 444 366 33 36 chr9 13613925 13614258 -128657186 + L2 LINE L2 2825 3156 -157 30 59 0 0 chr9 13614283 13614334 -128657110 + AT_rich Low_complexity Low_complexity 1 51 0 226 354 13 0 chr9 13614371 13614450 -128656994 + L2 LINE L2 3234 3313 0 441 257 81 0 chr9 13614667 13614803 -128656641 - L1M3 LINE L1 -552 5628 5482 * 958 205 51 77 chr9 13614779 13615125 -128656319 + L1MB7 LINE L1 5856 6178 0 378 308 65 33 chr9 13615230 13615444 -128656000 - L1M3 LINE L1 -1774 4372 4152 25760 159 12 17 chr9 13615695 13622170 -128649274 + L1PA8 LINE L1 14 6487 0 21 0 0 0 chr9 13622321 13622342 -128649102 + AT_rich Low_complexity Low_complexity 1 21 0 556 169 145 6 chr9 13622551 13622717 -128648727 + AluSg/x SINE Alu 117 305 -4 34 42 0 0 chr9 13622827 13622875 -128648569 + AT_rich Low_complexity Low_complexity 1 48 0 309 372 54 0 chr9 13623492 13623640 -128647804 - MLT1K LTR MaLR -197 391 236 259 371 91 8 chr9 13623900 13624164 -128647280 + L2 LINE L2 2534 2819 -495 2089 61 93 4 chr9 13625343 13625622 -128645822 + AluY SINE Alu 1 304 -7 2285 108 0 0 chr9 13626058 13626364 -128645080 + AluY SINE Alu 1 306 -5 186 43 0 0 chr9 13626647 13626670 -128644774 + (TC)n Simple_repeat Simple_repeat 2 24 0 1161 182 108 130 chr9 13626961 13627368 -128644076 - MLT2B2 LTR ERVL 0 515 118 270 0 0 0 chr9 13627375 13627405 -128644039 + (GA)n Simple_repeat Simple_repeat 2 31 0 538 160 150 0 chr9 13627405 13627505 -128643939 - MLT2B3 LTR ERVL -322 232 118 198 0 0 0 chr9 13627512 13627534 -128643910 + (GA)n Simple_repeat Simple_repeat 2 23 0 544 160 150 0 chr9 13627534 13627634 -128643810 - MLT2B3 LTR ERVL -322 232 118 216 0 0 0 chr9 13627641 13627665 -128643779 + (GA)n Simple_repeat Simple_repeat 2 25 0 528 170 150 0 chr9 13627665 13627765 -128643679 - MLT2B3 LTR ERVL -322 232 118 1183 190 69 0 chr9 13627791 13628007 -128643437 - MLT2B3 LTR ERVL -323 231 1 402 380 79 0 chr9 13628013 13628242 -128643202 + MIR SINE MIR 13 259 -3 1475 210 39 47 chr9 13628805 13629038 -128642406 - MLT1B LTR MaLR -12 378 148 2422 73 0 13 chr9 13629038 13629353 -128642091 + AluY SINE Alu 1 311 0 1475 210 39 47 chr9 13629353 13629500 -128641944 - MLT1B LTR MaLR -242 148 1 692 271 40 29 chr9 13629932 13630205 -128641239 + LTR16A LTR ERVL 86 361 -89 4849 161 11 14 chr9 13630305 13630793 -128640651 + L1PB4 LINE L1 4950 5438 -718 1655 196 3 3 chr9 13630793 13631089 -128640355 + AluJb SINE Alu 3 298 -14 4849 161 11 14 chr9 13631089 13631797 -128639647 + L1PB4 LINE L1 5438 6149 -7 204 284 0 74 chr9 13632136 13632217 -128639227 + L2 LINE L2 3161 3235 -37 914 197 110 99 chr9 13632534 13633069 -128638375 + MER67C LTR ERV1 1 466 0 279 221 79 57 chr9 13633853 13633993 -128637451 - L1ME4a LINE L1 -11 6110 5968 562 332 49 0 chr9 13634014 13634219 -128637225 - MIR SINE MIR -27 235 21 423 293 56 26 chr9 13634220 13634486 -128636958 - L1ME4a LINE L1 -335 5786 5513 23 54 0 0 chr9 13634573 13634610 -128636834 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr9 13635173 13635196 -128636248 + AT_rich Low_complexity Low_complexity 1 23 0 266 315 52 56 chr9 13635284 13635497 -128635947 - L2 LINE L2 -6 3307 3096 23 0 0 0 chr9 13636114 13636137 -128635307 + AT_rich Low_complexity Low_complexity 1 23 0 473 219 10 0 chr9 13637103 13637199 -128634245 + Charlie5 DNA MER1_type 142 238 -2374 233 98 24 0 chr9 13637213 13637254 -128634190 + Charlie5 DNA MER1_type 2530 2571 -41 1324 198 20 3 chr9 13637259 13637557 -128633887 - L1MA7 LINE L1 -1 6290 5988 258 333 12 42 chr9 13637610 13637778 -128633666 - MIR SINE MIR -1 261 99 270 0 0 0 chr9 13637874 13637904 -128633540 + (TG)n Simple_repeat Simple_repeat 2 31 0 5726 154 36 7 chr9 13638724 13639739 -128631705 + L1MC1 LINE L1 5288 6332 -1 1234 170 0 5 chr9 13639920 13640120 -128631324 + AluJb SINE Alu 85 283 -29 859 159 10 66 chr9 13640147 13640345 -128631099 + L1MC1 LINE L1 6037 6211 -122 772 278 53 56 chr9 13641239 13641706 -128629738 + L1ME LINE L1 490 955 -5575 765 278 138 47 chr9 13641694 13642412 -128629032 + L1ME LINE L1 846 1593 -4947 * 1295 251 86 53 chr9 13642393 13643760 -128627684 + L1ME LINE L1 1889 3292 -3248 26 0 0 0 chr9 13644151 13644177 -128627267 + AT_rich Low_complexity Low_complexity 1 26 0 828 256 89 63 chr9 13644622 13645051 -128626393 - MER67D LTR ERV1 -8 506 67 44 0 0 0 chr9 13645355 13645399 -128626045 + AT_rich Low_complexity Low_complexity 1 44 0 282 363 16 44 chr9 13645797 13645979 -128625465 - MIR SINE MIR -82 180 4 228 111 0 0 chr9 13647056 13647092 -128624352 + (CATATA)n Simple_repeat Simple_repeat 5 40 0 333 0 0 0 chr9 13647234 13647271 -128624173 + (TG)n Simple_repeat Simple_repeat 1 37 0 192 77 0 0 chr9 13647486 13647512 -128623932 + (CAG)n Simple_repeat Simple_repeat 1 26 0 947 236 81 24 chr9 13649189 13649650 -128621794 - MLT1E1 LTR MaLR 0 593 119 1994 252 101 24 chr9 13649937 13650875 -128620569 - L1MEc LINE L1 -2843 4114 3104 1910 292 17 10 chr9 13650877 13651463 -128619981 + MER90 LTR ERV1 1 590 -24 1570 277 76 27 chr9 13651499 13652060 -128619384 - L1MEc LINE L1 -4011 3127 2504 2840 150 8 10 chr9 13652060 13652548 -128618896 - L1PA16 LINE L1 -3 6163 5677 1570 277 76 27 chr9 13652548 13652899 -128618545 - L1MEc LINE L1 -4634 2504 2171 325 246 188 29 chr9 13652913 13653190 -128618254 - L1MC5 LINE L1 -36 7925 7605 1740 176 80 41 chr9 13653191 13653730 -128617714 - MLT2A2 LTR ERVL -2 552 1 22 0 0 0 chr9 13653745 13653767 -128617677 + AT_rich Low_complexity Low_complexity 1 22 0 1988 110 0 4 chr9 13653881 13654186 -128617258 - AluY SINE Alu 0 304 1 275 343 106 25 chr9 13654423 13654668 -128616776 + L2 LINE L2 1707 1971 -1343 342 0 0 0 chr9 13654861 13654899 -128616545 + (TC)n Simple_repeat Simple_repeat 1 38 0 416 302 76 44 chr9 13654967 13655206 -128616238 - MLT1F LTR MaLR -291 264 19 1185 160 9 5 chr9 13655321 13655540 -128615904 - L1MA5A LINE L1 -6 6291 6072 301 327 60 22 chr9 13655614 13655931 -128615513 - L1MEc LINE L1 -4864 2093 1781 247 263 0 0 chr9 13655937 13655994 -128615450 - L1PA16 LINE L1 -15 6151 6095 * 799 237 39 2 chr9 13655963 13656190 -128615254 - L1PA16 LINE L1 -73 6092 5858 514 289 102 29 chr9 13656191 13656485 -128614959 - L1MEc LINE L1 -5223 1738 1373 2318 69 3 31 chr9 13656790 13657109 -128614335 - AluY SINE Alu -1 310 1 30 45 0 0 chr9 13657726 13657770 -128613674 + AT_rich Low_complexity Low_complexity 1 44 0 243 300 69 85 chr9 13658808 13658938 -128612506 - L2 LINE L2 -8 3264 3137 331 300 27 18 chr9 13658969 13659079 -128612365 + MER91B DNA MER1_type 19 129 -61 271 161 0 0 chr9 13659553 13659609 -128611835 + L1MC4 LINE L1 6648 6703 -1339 217 146 55 0 chr9 13659757 13659812 -128611632 + (TA)n Simple_repeat Simple_repeat 2 59 0 282 330 199 23 chr9 13661192 13661413 -128610031 - MLT1K LTR MaLR -201 387 128 996 190 10 10 chr9 13661853 13662058 -128609386 + MER3 DNA MER1_type 1 205 -4 685 243 60 46 chr9 13662940 13663158 -128608286 + MIR SINE MIR 41 261 -1 371 65 32 0 chr9 13663744 13663806 -128607638 + (TTTTG)n Simple_repeat Simple_repeat 2 65 0 307 339 34 25 chr9 13666175 13666293 -128605151 + L2 LINE L2 3144 3262 -10 1149 227 131 28 chr9 13666673 13667083 -128604361 - MER66A LTR ERV1 -4 474 122 691 310 24 20 chr9 13667182 13667437 -128604007 - MER90 LTR ERV1 -1 613 358 216 0 0 0 chr9 13667437 13667461 -128603983 + (T)n Simple_repeat Simple_repeat 1 24 0 2321 77 6 16 chr9 13668391 13668704 -128602740 + AluY SINE Alu 1 310 -1 456 315 30 75 chr9 13669351 13669535 -128601909 - MLT1K LTR MaLR -2 586 418 216 0 0 0 chr9 13669535 13669559 -128601885 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 456 315 30 75 chr9 13669559 13669669 -128601775 - MLT1K LTR MaLR -170 418 305 363 313 125 11 chr9 13669671 13669847 -128601597 + LTR16C LTR ERVL 4 199 -292 550 230 32 0 chr9 13669914 13670040 -128601404 + LTR16C LTR ERVL 358 487 -4 13265 147 33 20 chr9 13670668 13673057 -128598387 + Tigger1 DNA MER2_type 1 2418 0 320 337 89 0 chr9 13674594 13674695 -128596749 + MIR3 SINE MIR 84 193 -15 24 53 0 0 chr9 13675104 13675142 -128596302 + AT_rich Low_complexity Low_complexity 1 38 0 602 255 24 106 chr9 13675856 13676111 -128595333 - MIR SINE MIR -24 238 5 251 439 14 0 chr9 13676267 13676415 -128595029 + MIR3 SINE MIR 31 180 -28 183 410 0 48 chr9 13678169 13678274 -128593170 + MIR SINE MIR 16 115 -93 609 319 47 21 chr9 13678931 13679166 -128592278 + LTR33 LTR ERVL 10 250 -271 6816 35 4 0 chr9 13679336 13680155 -128591289 - L1PA5 LINE L1 0 6154 5333 467 330 73 31 chr9 13681028 13681452 -128589992 + MLT1J1 LTR MaLR 1 442 -4 21 0 0 0 chr9 13681489 13681510 -128589934 + AT_rich Low_complexity Low_complexity 1 21 0 209 373 125 25 chr9 13681624 13682056 -128589388 - L2 LINE L2 -26 3287 2813 1205 322 99 6 chr9 13682144 13682657 -128588787 + MLT1G1 LTR MaLR 3 563 -32 646 322 46 21 chr9 13682712 13682951 -128588493 + MIR SINE MIR 7 251 -11 207 0 0 0 chr9 13683331 13683354 -128588090 + (A)n Simple_repeat Simple_repeat 1 23 0 624 109 0 157 chr9 13683779 13683926 -128587518 + AluSg/x SINE Alu 159 282 -30 22 0 0 0 chr9 13684055 13684077 -128587367 + AT_rich Low_complexity Low_complexity 1 22 0 375 270 111 21 chr9 13684092 13684281 -128587163 - MIR SINE MIR -47 215 10 4158 184 29 55 chr9 13684702 13686052 -128585392 + L1MA6 LINE L1 4991 6295 -5 1504 104 101 56 chr9 13686064 13686332 -128585112 + AluY SINE Alu 19 298 -13 238 188 16 47 chr9 13687119 13687183 -128584261 + CT-rich Low_complexity Low_complexity 5 66 0 1515 114 61 8 chr9 13688474 13688720 -128582724 + MER44D DNA MER2_type 2 530 -79 1393 174 87 53 chr9 13688721 13689097 -128582347 - MER66A LTR ERV1 -3 475 97 1918 177 49 38 chr9 13689119 13689662 -128581782 - MLT2A2 LTR ERVL 0 554 1 279 246 18 0 chr9 13689843 13689900 -128581544 + MER44D DNA MER2_type 547 604 -1 22 0 0 0 chr9 13690350 13690372 -128581072 + AT_rich Low_complexity Low_complexity 1 22 0 509 271 93 19 chr9 13690946 13691160 -128580284 - MIR SINE MIR -1 261 32 210 133 67 50 chr9 13691211 13691271 -128580173 + MIR SINE MIR 106 166 -96 721 311 37 87 chr9 13691429 13691778 -128579666 + L2 LINE L2 2620 2912 -401 2215 105 0 3 chr9 13691778 13692083 -128579361 - AluY SINE Alu -7 304 1 721 311 37 87 chr9 13692083 13692466 -128578978 + L2 LINE L2 2912 3313 0 23 0 0 0 chr9 13692883 13692906 -128578538 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr9 13693036 13693059 -128578385 + AT_rich Low_complexity Low_complexity 1 23 0 204 125 0 0 chr9 13693385 13693417 -128578027 + (T)n Simple_repeat Simple_repeat 1 32 0 223 308 100 50 chr9 13694583 13694703 -128576741 + MIR3 SINE MIR 2 127 -81 181 324 27 97 chr9 13698157 13698342 -128573102 - MIR3 SINE MIR -5 203 32 1162 139 53 127 chr9 13699205 13699528 -128571916 + AluJb SINE Alu 2 300 -2 232 170 30 150 chr9 13699629 13699729 -128571715 + L1ME4a LINE L1 5935 6022 -99 7630 186 37 10 chr9 13699905 13701689 -128569755 + L1M2 LINE L1 3700 5536 -743 209 379 103 0 chr9 13701757 13701873 -128569571 + MIR SINE MIR 19 146 -116 11190 206 31 34 chr9 13702806 13703193 -128568251 - L1MA4A LINE L1 -23 6982 6595 357 43 0 0 chr9 13703193 13703240 -128568204 + (TG)n Simple_repeat Simple_repeat 2 48 0 11190 206 31 34 chr9 13703240 13703566 -128567878 - L1MA4A LINE L1 -410 6595 6270 207 0 0 0 chr9 13703566 13703589 -128567855 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 11190 206 31 34 chr9 13703589 13704053 -128567391 - L1MA4A LINE L1 -735 6270 5806 1765 157 62 20 chr9 13704053 13704410 -128567034 + THE1C LTR MaLR 1 372 -3 11190 206 31 34 chr9 13704410 13705446 -128565998 - L1MA4A LINE L1 -1199 5806 4769 2020 116 7 3 chr9 13705446 13705738 -128565706 - AluY SINE Alu -18 293 1 11190 206 31 34 chr9 13705738 13708114 -128563330 - L1MA4A LINE L1 -2236 4769 2442 185 0 0 39 chr9 13708114 13708140 -128563304 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 11190 206 31 34 chr9 13708140 13708793 -128562651 - L1MA4A LINE L1 -4563 2442 1789 4536 183 38 49 chr9 13708805 13708977 -128562467 - L1PB3 LINE L1 0 6154 5982 207 0 0 0 chr9 13708977 13709000 -128562444 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1809 161 0 0 chr9 13709000 13709274 -128562170 - AluSx SINE Alu -28 284 11 4536 183 38 49 chr9 13709274 13709527 -128561917 - L1PB3 LINE L1 -171 5983 5729 222 37 0 0 chr9 13709527 13709554 -128561890 + (TG)n Simple_repeat Simple_repeat 1 27 0 4536 183 38 49 chr9 13709554 13711003 -128560441 - L1PB3 LINE L1 -425 5729 4300 4235 284 26 2 chr9 13711006 13712190 -128559254 - L1MA4A LINE L1 -5058 1791 580 653 298 0 0 chr9 13712207 13712368 -128559076 - L1MA4A LINE L1 -6368 481 321 23 33 0 0 chr9 13712400 13712430 -128559014 + AT_rich Low_complexity Low_complexity 1 30 0 21 57 0 0 chr9 13712460 13712495 -128558949 + AT_rich Low_complexity Low_complexity 1 35 0 28 48 0 0 chr9 13712773 13712815 -128558629 + AT_rich Low_complexity Low_complexity 1 42 0 22 56 0 0 chr9 13713243 13713279 -128558165 + AT_rich Low_complexity Low_complexity 1 36 0 3211 48 0 106 chr9 13713618 13714119 -128557325 - LTR7 LTR ERV1 -2 448 1 21 0 0 0 chr9 13715289 13715310 -128556134 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr9 13717188 13717226 -128554218 + AT_rich Low_complexity Low_complexity 1 38 0 3159 188 40 1 chr9 13718416 13719133 -128552311 + L1M2 LINE L1 4697 5443 -766 2256 109 3 0 chr9 13719133 13719435 -128552009 + AluSq SINE Alu 1 303 -10 3159 188 40 1 chr9 13719435 13719460 -128551984 + L1M2 LINE L1 5443 5466 -743 2605 111 6 0 chr9 13719563 13719924 -128551520 + THE1B LTR MaLR 2 364 0 9941 118 50 8 chr9 13719926 13721441 -128550003 + THE1B-int LTR MaLR 3 1580 0 2341 134 11 0 chr9 13721443 13721801 -128549643 + THE1B LTR MaLR 3 364 0 21 0 0 0 chr9 13721861 13721882 -128549562 + AT_rich Low_complexity Low_complexity 1 21 0 300 323 88 16 chr9 13722208 13722400 -128549044 - HAL1b LINE L1 -1019 329 124 728 357 23 23 chr9 13722421 13722763 -128548681 + LTR16A LTR ERVL 72 413 -37 1235 284 99 24 chr9 13722819 13723323 -128548121 - MLT1F LTR MaLR 0 542 1 1350 270 157 18 chr9 13723346 13723850 -128547594 - MLT1E LTR MaLR -3 590 17 733 315 67 63 chr9 13723851 13724356 -128547088 + HERV16 LTR ERVL 74 580 -4416 195 290 0 32 chr9 13724786 13724848 -128546596 + MIR SINE MIR 85 144 -64 198 0 0 0 chr9 13725948 13725970 -128545474 + (TG)n Simple_repeat Simple_repeat 1 22 0 1432 183 26 95 chr9 13725974 13726363 -128545081 - MLT1B LTR MaLR -2 388 27 2261 118 0 6 chr9 13726370 13726684 -128544760 - AluSx SINE Alu 0 312 1 210 319 43 32 chr9 13728586 13728680 -128542764 - MIR SINE MIR -97 165 71 653 286 42 24 chr9 13730009 13730222 -128541222 + MIR SINE MIR 8 224 -38 471 104 0 0 chr9 13730284 13730351 -128541093 + Alu SINE Alu 1 67 -251 1105 213 47 84 chr9 13730418 13730846 -128540598 - MER92A LTR ERV1 0 412 1 912 219 16 3 chr9 13731419 13731694 -128539750 + MER89 LTR ERV1 1 378 -181 2044 120 7 10 chr9 13731735 13731868 -128539576 + AluSc SINE Alu 1 133 -176 1988 109 0 72 chr9 13731868 13732199 -128539245 + AluSg SINE Alu 1 307 -3 2044 120 7 10 chr9 13732199 13732374 -128539070 + AluSc SINE Alu 133 308 -1 2304 196 32 6 chr9 13732380 13732853 -128538591 - MER67D LTR ERV1 -33 478 1 866 196 0 50 chr9 13732853 13732967 -128538477 + MER89 LTR ERV1 369 470 -89 2336 128 6 6 chr9 13732967 13733310 -128538134 - MER61A LTR ERV1 0 343 1 866 196 0 50 chr9 13733310 13733394 -128538050 + MER89 LTR ERV1 470 557 -2 797 241 99 26 chr9 13733471 13733813 -128537631 - MSTD LTR MaLR -3 393 1 227 302 94 68 chr9 13734003 13734195 -128537249 - L2 LINE L2 -144 3169 2973 458 170 54 18 chr9 13734195 13734307 -128537137 + MER4C LTR ERV1 1 116 -349 1029 217 100 112 chr9 13734389 13734878 -128536566 + LTR34 LTR ERV1 137 695 -4 515 244 0 133 chr9 13734905 13735130 -128536314 - L2 LINE L2 -391 2923 2729 337 124 34 15 chr9 13735226 13735296 -128536148 - MER67D LTR ERV1 -392 122 64 856 203 13 4 chr9 13735632 13736096 -128535348 + CT-rich Low_complexity Low_complexity 1 468 0 202 234 0 0 chr9 13740137 13740184 -128531260 + A-rich Low_complexity Low_complexity 1 47 0 357 313 69 6 chr9 13740443 13740603 -128530841 + MIR SINE MIR 49 218 -44 2152 129 0 0 chr9 13741025 13741336 -128530108 + AluSx SINE Alu 1 311 -1 219 296 184 0 chr9 13741955 13742053 -128529391 - L2 LINE L2 -16 3256 3141 188 330 87 50 chr9 13742198 13742416 -128529028 - L2 LINE L2 -231 3041 2816 26 0 0 0 chr9 13742698 13742724 -128528720 + AT_rich Low_complexity Low_complexity 1 26 0 1728 169 14 0 chr9 13743245 13743523 -128527921 + AluJo SINE Alu 5 286 -26 218 161 32 32 chr9 13743531 13743593 -128527851 + A-rich Low_complexity Low_complexity 5 66 0 1804 112 0 0 chr9 13744181 13744432 -128527012 - AluSc SINE Alu -21 288 38 25 31 0 0 chr9 13744738 13744770 -128526674 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr9 13744999 13745020 -128526424 + AT_rich Low_complexity Low_complexity 1 21 0 351 292 58 18 chr9 13745138 13745309 -128526135 + L1ME LINE L1 5482 5659 -462 1284 212 48 10 chr9 13745437 13745748 -128525696 - MER33 DNA MER1_type 0 324 2 198 302 47 23 chr9 13746050 13746136 -128525308 + MIR SINE MIR 54 141 -67 2124 122 19 50 chr9 13746477 13746853 -128524591 + THE1B LTR MaLR 1 364 0 11184 101 19 0 chr9 13746853 13748403 -128523041 + THE1B-int LTR MaLR 1 1580 0 2044 114 62 31 chr9 13748404 13748756 -128522688 + THE1B LTR MaLR 2 364 0 482 272 99 47 chr9 13748785 13748818 -128522626 + MIR SINE MIR 33 63 -199 1511 175 50 68 chr9 13748818 13749200 -128522244 + THE1C LTR MaLR 1 375 0 482 272 99 47 chr9 13749200 13749379 -128522065 + MIR SINE MIR 63 256 -6 181 196 59 59 chr9 13749439 13749490 -128521954 + MIR SINE MIR 207 257 -5 9483 25 0 0 chr9 13749562 13751460 -128519984 - L1PA2 LINE L1 -1 6154 4257 27 36 0 36 chr9 13752143 13752161 -128519283 + AT_rich Low_complexity Low_complexity 1 18 -36 2237 75 4 0 chr9 13752161 13752487 -128518957 + AluY SINE Alu 2 328 0 27 36 0 36 chr9 13752487 13752523 -128518921 + AT_rich Low_complexity Low_complexity 18 54 0 228 306 41 16 chr9 13753131 13753252 -128518192 + L1ME LINE L1 5518 5641 -480 203 217 0 29 chr9 13755151 13755220 -128516224 + (TA)n Simple_repeat Simple_repeat 2 68 0 8223 186 21 12 chr9 13755352 13757291 -128514153 + L1MC1 LINE L1 6 2053 -4373 760 242 27 31 chr9 13757309 13757602 -128513842 + L1M4 LINE L1 4310 4601 -1545 297 250 110 0 chr9 13757597 13757733 -128513711 + L1M4 LINE L1 3794 3944 -2202 * 761 168 22 119 chr9 13757730 13757956 -128513488 + L1MA6 LINE L1 6093 6296 -4 1094 245 112 40 chr9 13758041 13758331 -128513113 + L1M4 LINE L1 4699 5038 -1108 2173 104 0 0 chr9 13758331 13758619 -128512825 + AluSg SINE Alu 13 300 -10 1094 245 112 40 chr9 13758619 13758802 -128512642 + L1M4 LINE L1 5038 5206 -940 * 3622 231 54 3 chr9 13758799 13760137 -128511307 + L1MC1 LINE L1 2100 3507 -2919 2768 143 47 0 chr9 13760168 13760679 -128510765 + L1MA2 LINE L1 5769 6303 -1 262 236 63 24 chr9 13760724 13760851 -128510593 + L1ME4a LINE L1 5944 6075 -46 5619 189 22 38 chr9 13760854 13762531 -128508913 + L1MC1 LINE L1 4971 6607 -6 187 345 46 11 chr9 13762544 13762631 -128508813 - MIR SINE MIR -83 125 36 302 86 29 29 chr9 13763367 13763437 -128508007 + (TAGA)n Simple_repeat Simple_repeat 1 70 0 358 291 48 62 chr9 13763887 13764097 -128507347 - MIR SINE MIR -8 254 48 2120 141 34 8 chr9 13764370 13764725 -128506719 + THE1B LTR MaLR 1 364 0 180 335 39 95 chr9 13765446 13765625 -128505819 - L2 LINE L2 -207 3065 2897 231 225 28 0 chr9 13765865 13765936 -128505508 + (CA)n Simple_repeat Simple_repeat 2 74 0 187 366 123 25 chr9 13766233 13766517 -128504927 - L2 LINE L2 -670 2644 2333 32 57 0 0 chr9 13766539 13766592 -128504852 + AT_rich Low_complexity Low_complexity 1 53 0 321 89 0 0 chr9 13767090 13767135 -128504309 + (T)n Simple_repeat Simple_repeat 1 45 0 207 0 0 0 chr9 13767368 13767391 -128504053 + (T)n Simple_repeat Simple_repeat 1 23 0 240 86 0 0 chr9 13768178 13768213 -128503231 + (TG)n Simple_repeat Simple_repeat 2 36 0 1997 244 99 38 chr9 13769216 13769975 -128501469 - L1ME1 LINE L1 -5 6161 5357 489 301 100 26 chr9 13770065 13770566 -128500878 + L1M4 LINE L1 3044 3581 -2565 1443 228 43 73 chr9 13770571 13771037 -128500407 + L1ME1 LINE L1 5672 6123 -43 236 261 15 0 chr9 13771245 13771310 -128500134 + L1MEd LINE L1 973 1038 -5081 413 307 42 32 chr9 13771354 13771612 -128499832 + L1MEd LINE L1 1098 1403 -4786 327 292 75 32 chr9 13771964 13772310 -128499134 + L1MEd LINE L1 2114 2474 -3655 26 74 0 0 chr9 13772634 13772688 -128498756 + AT_rich Low_complexity Low_complexity 1 54 0 219 250 0 0 chr9 13773039 13773087 -128498357 + (TATATG)n Simple_repeat Simple_repeat 3 50 0 262 253 36 0 chr9 13773088 13773171 -128498273 + L1MC4 LINE L1 6614 6699 -1343 1089 139 18 72 chr9 13773755 13773978 -128497466 - L1PA16 LINE L1 0 6166 5956 202 182 0 0 chr9 13774348 13774381 -128497063 + (TGG)n Simple_repeat Simple_repeat 3 35 0 2045 132 0 13 chr9 13775465 13775768 -128495676 - AluSx SINE Alu -13 299 1 25 0 0 0 chr9 13776294 13776319 -128495125 + AT_rich Low_complexity Low_complexity 1 25 0 28 48 0 0 chr9 13777793 13777835 -128493609 + AT_rich Low_complexity Low_complexity 1 42 0 1308 114 36 0 chr9 13778020 13778213 -128493231 + MSTA LTR MaLR 1 200 -228 18287 81 8 3 chr9 13778213 13781651 -128489793 + L1PA7 LINE L1 2700 6154 0 1218 145 97 0 chr9 13781666 13781894 -128489550 + MSTA LTR MaLR 179 428 0 2555 180 49 64 chr9 13784371 13785029 -128486415 + L1MA4 LINE L1 5632 6289 -11 642 259 131 34 chr9 13785366 13785602 -128485842 - MIR SINE MIR 0 262 4 1739 157 18 0 chr9 13787416 13787738 -128483706 - AluSg SINE Alu 0 327 1 1825 34 13 8 chr9 13788330 13788568 -128482876 + L1PA4 LINE L1 5917 6155 0 236 384 46 26 chr9 13788588 13788739 -128482705 + L2 LINE L2 2943 3096 -217 311 314 107 0 chr9 13789782 13789903 -128481541 + L2 LINE L2 3176 3309 -4 183 80 0 0 chr9 13791113 13791138 -128480306 + (TTTTC)n Simple_repeat Simple_repeat 5 29 0 242 247 0 22 chr9 13793321 13793410 -128478034 - L1MC4 LINE L1 -1339 6703 6617 819 301 67 33 chr9 13793566 13793985 -128477459 + L2 LINE L2 2877 3309 -4 365 267 70 76 chr9 13794855 13795027 -128476417 + MIR SINE MIR 73 243 -19 2064 238 11 6 chr9 13795763 13796306 -128475138 + L1M4 LINE L1 4734 5279 -867 9785 127 36 5 chr9 13796308 13797864 -128473580 + Tigger1 DNA MER2_type 814 2418 0 912 240 164 21 chr9 13799364 13799835 -128471609 - L1MDb LINE L1 -1224 5182 4645 933 302 63 4 chr9 13799962 13800340 -128471104 - L1MDb LINE L1 -1903 4503 4094 30 83 0 0 chr9 13800341 13800413 -128471031 + AT_rich Low_complexity Low_complexity 1 72 0 568 273 83 14 chr9 13800420 13800636 -128470808 - L1MDb LINE L1 -2305 4101 3871 1003 190 0 16 chr9 13800637 13800821 -128470623 - AluJb SINE Alu 0 312 132 213 225 0 0 chr9 13800821 13800861 -128470583 + (CATATA)n Simple_repeat Simple_repeat 2 41 0 739 154 0 0 chr9 13800890 13801007 -128470437 - AluJb SINE Alu -193 119 3 1647 260 48 66 chr9 13801014 13801802 -128469642 - L1MDb LINE L1 -2531 3875 3105 1606 204 119 28 chr9 13801802 13802263 -128469181 + MLT1D LTR MaLR 1 503 -2 1647 260 48 66 chr9 13802263 13802400 -128469044 - L1MDb LINE L1 -3301 3105 2967 583 267 66 14 chr9 13802471 13802838 -128468606 - L1MDb LINE L1 -4815 1591 1202 297 135 0 0 chr9 13803561 13803613 -128467831 + (TG)n Simple_repeat Simple_repeat 1 52 0 522 158 16 24 chr9 13803614 13803741 -128467703 + GA-rich Low_complexity Low_complexity 1 126 0 286 327 61 67 chr9 13804575 13804872 -128466572 + LTR16C LTR ERVL 194 488 -3 840 157 0 8 chr9 13805862 13805996 -128465448 + AluSq/x SINE Alu 2 134 -179 1609 162 7 74 chr9 13806011 13806320 -128465124 + AluSx SINE Alu 3 290 -22 2343 138 42 45 chr9 13806400 13806580 -128464864 - MSTB LTR MaLR 0 426 247 2146 132 73 9 chr9 13806580 13806922 -128464522 - THE1B LTR MaLR 0 364 1 11633 94 1 7 chr9 13806922 13808511 -128462933 - THE1B-int LTR MaLR 0 1580 1 1959 163 80 0 chr9 13808511 13808848 -128462596 - THE1B LTR MaLR 0 364 1 2343 138 42 45 chr9 13808848 13809092 -128462352 - MSTB LTR MaLR -176 250 1 587 304 49 66 chr9 13809273 13809516 -128461928 + MIR SINE MIR 5 243 -19 26 88 0 0 chr9 13809654 13809722 -128461722 + AT_rich Low_complexity Low_complexity 1 68 0 29 47 0 0 chr9 13810859 13810902 -128460542 + AT_rich Low_complexity Low_complexity 1 43 0 2069 118 0 19 chr9 13811254 13811567 -128459877 + AluSg SINE Alu 1 307 -3 233 232 0 0 chr9 13812242 13812298 -128459146 + T-rich Low_complexity Low_complexity 1 56 0 1708 233 15 25 chr9 13813237 13813640 -128457804 - MER47B DNA MER2_type 0 418 20 433 320 45 6 chr9 13814085 13814292 -128457152 + MIR SINE MIR 15 228 -34 384 314 133 18 chr9 13815053 13815279 -128456165 - MLT1J LTR MaLR -154 357 106 6093 74 1 4 chr9 13815430 13816229 -128455215 - L1PA6 LINE L1 0 6154 5358 225 0 0 0 chr9 13817302 13817327 -128454117 + (CA)n Simple_repeat Simple_repeat 1 25 0 315 244 0 24 chr9 13819551 13819633 -128451811 - MLT1H LTR MaLR -364 185 106 2295 99 3 6 chr9 13819677 13819989 -128451455 - AluSx SINE Alu -1 311 1 1134 256 76 51 chr9 13821426 13821914 -128449530 + LTR53 LTR ERVL 20 519 0 29 28 0 0 chr9 13823947 13823983 -128447461 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr9 13824223 13824244 -128447200 + AT_rich Low_complexity Low_complexity 1 21 0 21 82 0 0 chr9 13824362 13824411 -128447033 + AT_rich Low_complexity Low_complexity 1 49 0 238 186 57 29 chr9 13824411 13824481 -128446963 + L1ME LINE L1 5337 5408 -713 326 269 22 15 chr9 13824535 13824669 -128446775 + GA-rich Low_complexity Low_complexity 2 136 0 230 303 127 0 chr9 13824803 13825031 -128446413 + L1ME LINE L1 5636 5892 -229 1476 209 39 33 chr9 13825118 13825481 -128445963 - MLT1A1 LTR MaLR 0 365 1 282 56 0 0 chr9 13825929 13825965 -128445479 + (TA)n Simple_repeat Simple_repeat 1 36 0 2109 89 17 10 chr9 13825966 13826259 -128445185 - AluSx SINE Alu -17 295 1 22 0 0 0 chr9 13826407 13826429 -128445015 + AT_rich Low_complexity Low_complexity 1 22 0 758 287 101 49 chr9 13827172 13827500 -128443944 - MLT1J LTR MaLR -57 454 110 1491 223 108 32 chr9 13828064 13828562 -128442882 - LTR55 LTR ERV -7 541 6 4689 144 30 25 chr9 13828597 13829444 -128442000 - MER49 LTR ERV1 -24 899 49 262 92 92 174 chr9 13829433 13829542 -128441902 - MER49 LTR ERV1 -823 100 1 * 372 163 0 0 chr9 13829551 13829637 -128441807 + T-rich Low_complexity Low_complexity 1 86 0 10196 14 0 0 chr9 13829637 13831600 -128439844 - L1HS LINE L1 0 6155 4193 6465 24 0 0 chr9 13831598 13832356 -128439088 + L1HS LINE L1 3439 4196 -1950 * 21 0 0 0 chr9 13833259 13833280 -128438164 + AT_rich Low_complexity Low_complexity 1 21 0 271 311 48 0 chr9 13834033 13834136 -128437308 + L2 LINE L2 3148 3255 -17 480 297 150 38 chr9 13837308 13837601 -128433843 + MLT1J2 LTR MaLR 5 330 -120 475 314 69 25 chr9 13839600 13839804 -128431640 + L2 LINE L2 2424 2636 -678 1364 225 28 3 chr9 13839806 13840091 -128431353 - ERVL-B1 LTR ERVL -5244 520 229 487 254 29 14 chr9 13840131 13840269 -128431175 - ERVL-B1 LTR ERVL -5623 141 2 2146 208 83 29 chr9 13840274 13840756 -128430688 - MLT2B1 LTR ERVL -8 512 5 845 312 112 31 chr9 13840764 13841219 -128430225 + L2 LINE L2 2805 3296 -17 378 42 0 0 chr9 13841221 13841269 -128430175 + (GGAA)n Simple_repeat Simple_repeat 1 48 0 2015 106 11 3 chr9 13841980 13842263 -128429181 - AluSq SINE Alu -15 298 14 287 278 178 30 chr9 13842434 13842603 -128428841 - MIR SINE MIR -58 204 11 186 143 0 0 chr9 13843283 13843318 -128428126 + (CCA)n Simple_repeat Simple_repeat 2 36 0 2013 160 27 11 chr9 13843672 13844041 -128427403 - THE1C LTR MaLR 0 375 1 437 130 0 0 chr9 13844366 13844435 -128427009 - L1PA13 LINE L1 -3 6160 6092 25 31 0 0 chr9 13845042 13845074 -128426370 + AT_rich Low_complexity Low_complexity 1 32 0 180 365 0 0 chr9 13845752 13845815 -128425629 - L2 LINE L2 0 3313 3251 245 393 21 38 chr9 13845944 13846130 -128425314 - L2 LINE L2 -246 3026 2844 23 0 0 0 chr9 13846313 13846336 -128425108 + AT_rich Low_complexity Low_complexity 1 23 0 369 0 0 0 chr9 13846384 13846425 -128425019 + (CA)n Simple_repeat Simple_repeat 2 42 0 456 335 71 22 chr9 13846956 13847180 -128424264 - MIR SINE MIR -15 247 13 268 241 121 91 chr9 13848681 13848913 -128422531 + L1MC4 LINE L1 6755 6993 -1049 186 174 0 0 chr9 13849124 13849170 -128422274 + (TA)n Simple_repeat Simple_repeat 2 47 0 2652 140 33 11 chr9 13849311 13849768 -128421676 - MLT1C LTR MaLR 0 467 1 220 349 93 35 chr9 13851432 13851604 -128419840 - MER5A DNA MER1_type -7 182 1 4878 200 43 17 chr9 13851762 13853689 -128417755 - L1MA10 LINE L1 -4 6330 4344 26 0 0 0 chr9 13856377 13856403 -128415041 + AT_rich Low_complexity Low_complexity 1 26 0 236 378 28 0 chr9 13858333 13858476 -128412968 + MIR SINE MIR 102 248 -14 207 211 19 19 chr9 13859637 13859689 -128411755 + CT-rich Low_complexity Low_complexity 2 53 0 727 217 12 24 chr9 13860176 13860342 -128411102 - FRAM SINE Alu -2 164 1 387 273 31 70 chr9 13860376 13860452 -128410992 - MLT1K LTR MaLR 0 588 511 2324 55 0 3 chr9 13860452 13860744 -128410700 + AluY SINE Alu 1 291 -20 531 0 0 0 chr9 13860744 13860803 -128410641 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 387 273 31 70 chr9 13860803 13860952 -128410492 - MLT1K LTR MaLR -75 513 371 1748 187 0 0 chr9 13861063 13861357 -128410087 - AluJo SINE Alu -16 296 3 242 28 0 28 chr9 13861894 13861930 -128409514 + (TTG)n Simple_repeat Simple_repeat 2 36 0 473 270 38 13 chr9 13861988 13862147 -128409297 - MER104 DNA Tc2 -9 171 9 478 327 57 16 chr9 13862178 13862426 -128409018 + MIR SINE MIR 5 262 0 788 236 97 0 chr9 13863095 13863290 -128408154 + MER20 DNA MER1_type 1 214 -5 881 148 112 133 chr9 13864336 13864674 -128406770 - MER33 DNA MER1_type 0 324 1 393 329 51 7 chr9 13865116 13865253 -128406191 - MIR SINE MIR -114 148 6 507 107 0 0 chr9 13867742 13867817 -128403627 + (TA)n Simple_repeat Simple_repeat 1 75 0 2017 218 54 30 chr9 13867832 13868273 -128403171 - MLT2B1 LTR ERVL -68 452 1 1027 234 12 81 chr9 13868412 13868758 -128402686 - MLT1H LTR MaLR -169 380 59 192 347 40 0 chr9 13868809 13868884 -128402560 + MIR SINE MIR 51 128 -80 706 191 48 64 chr9 13869184 13869372 -128402072 - MER5A DNA MER1_type -1 188 4 580 318 87 12 chr9 13869425 13869677 -128401767 - MLT1I LTR MaLR -134 275 5 377 390 110 24 chr9 13869763 13870299 -128401145 - L2 LINE L2 -880 2434 1853 195 42 0 0 chr9 13870631 13870655 -128400789 + (CA)n Simple_repeat Simple_repeat 2 25 0 279 203 22 138 chr9 13870762 13870900 -128400544 - MLT1H LTR MaLR -3 546 425 769 265 45 30 chr9 13871161 13871361 -128400083 - MER63A DNA MER1_type -2 208 6 239 196 54 120 chr9 13871454 13871546 -128399898 - L2 LINE L2 0 3272 3187 273 128 0 0 chr9 13871596 13871643 -128399801 + (CA)n Simple_repeat Simple_repeat 2 48 0 202 388 29 29 chr9 13873415 13873585 -128397859 + L3 LINE CR1 1407 1576 -1 320 365 72 38 chr9 13873781 13874044 -128397400 + L3 LINE CR1 557 828 -749 254 226 0 16 chr9 13874047 13874109 -128397335 + L1ME2 LINE L1 6004 6064 -100 597 344 82 22 chr9 13874489 13874855 -128396589 + L3 LINE CR1 837 1224 -353 44 20 0 0 chr9 13874969 13875020 -128396424 + AT_rich Low_complexity Low_complexity 1 51 0 186 167 0 0 chr9 13875078 13875114 -128396330 + (CA)n Simple_repeat Simple_repeat 1 36 0 953 256 73 38 chr9 13875960 13876409 -128395035 + Charlie4a DNA MER1_type 3 467 -41 218 57 57 0 chr9 13876512 13876547 -128394897 + T-rich Low_complexity Low_complexity 4 40 0 184 225 141 14 chr9 13876784 13876855 -128394589 + L2 LINE L2 137 216 -3098 459 252 9 9 chr9 13877540 13877651 -128393793 + MIR SINE MIR 31 141 -121 418 344 7 26 chr9 13877845 13877999 -128393445 - MIR3 SINE MIR -19 189 39 190 358 63 0 chr9 13878531 13878626 -128392818 + L2 LINE L2 3193 3293 -20 250 340 119 16 chr9 13878769 13878963 -128392481 + L2 LINE L2 2812 3025 -247 251 326 44 44 chr9 13879396 13879531 -128391913 - L2 LINE L2 -1 3271 3137 864 305 0 5 chr9 13879623 13879846 -128391598 + MIR SINE MIR 8 229 -33 22 70 0 0 chr9 13879933 13879976 -128391468 + AT_rich Low_complexity Low_complexity 1 43 0 1087 86 0 7 chr9 13879979 13880130 -128391314 - L1PA10 LINE L1 -11 6157 6008 1190 278 54 84 chr9 13880306 13880878 -128390566 - MLT1H1 LTR MaLR 0 555 1 354 352 98 34 chr9 13880976 13881240 -128390204 + L2 LINE L2 2950 3230 -42 21 0 0 0 chr9 13881401 13881422 -128390022 + AT_rich Low_complexity Low_complexity 1 21 0 492 278 181 0 chr9 13881881 13882086 -128389358 - MIR SINE MIR -10 252 11 212 235 12 74 chr9 13882211 13882292 -128389152 - L2 LINE L2 -905 2409 2334 381 229 57 8 chr9 13882721 13882843 -128388601 + LTR16A1 LTR ERVL 330 457 0 206 398 27 32 chr9 13883754 13883975 -128387469 + L2 LINE L2 2684 2903 -411 182 327 159 19 chr9 13885931 13886038 -128385406 - L2 LINE L2 0 3272 3151 738 241 93 0 chr9 13886176 13886392 -128385052 + MER69 DNA AcHobo 2291 2526 0 2327 81 0 0 chr9 13886710 13887006 -128384438 + AluY SINE Alu 1 296 -15 654 322 48 9 chr9 13887712 13887942 -128383502 + MIR SINE MIR 10 248 -14 217 128 43 0 chr9 13888667 13888714 -128382730 + (TCTA)n Simple_repeat Simple_repeat 4 52 0 249 187 93 40 chr9 13890159 13890234 -128381210 - MIR SINE MIR 0 262 184 28 0 0 0 chr9 13890320 13890348 -128381096 + AT_rich Low_complexity Low_complexity 1 28 0 213 238 16 66 chr9 13890573 13890695 -128380749 + A-rich Low_complexity Low_complexity 4 119 0 23 78 0 0 chr9 13890787 13890838 -128380606 + AT_rich Low_complexity Low_complexity 1 51 0 318 319 55 55 chr9 13891217 13891578 -128379866 + L1M4 LINE L1 2690 3050 -3096 2780 239 22 8 chr9 13891639 13892282 -128379162 + MER82 DNA MER2_type 2 653 0 1527 222 29 18 chr9 13892528 13892871 -128378573 + MLT1A1 LTR MaLR 7 353 -12 22 0 0 0 chr9 13893039 13893061 -128378383 + AT_rich Low_complexity Low_complexity 1 22 0 309 143 16 16 chr9 13895537 13895600 -128375844 - MLT1H LTR MaLR -446 103 41 2007 124 0 0 chr9 13896783 13897056 -128374388 + AluSx SINE Alu 1 273 -39 207 0 0 0 chr9 13898347 13898370 -128373074 + (TTAA)n Simple_repeat Simple_repeat 4 26 0 237 235 0 86 chr9 13898399 13898480 -128372964 + MLT1L LTR MaLR 137 221 -367 301 213 0 0 chr9 13898531 13898578 -128372866 + MER5A DNA MER1_type 50 96 -93 2338 152 8 0 chr9 13898578 13898946 -128372498 + MLT2D LTR ERVL 1 371 -43 513 162 10 50 chr9 13899026 13899125 -128372319 + MER5A DNA MER1_type 94 188 -1 1332 277 137 31 chr9 13899202 13899786 -128371658 + MLT2F LTR ERVL 18 663 0 1568 155 0 12 chr9 13900457 13900715 -128370729 - AluJb SINE Alu -57 255 1 189 214 31 10 chr9 13901074 13901172 -128370272 + (CTATA)n Simple_repeat Simple_repeat 4 103 0 306 0 0 0 chr9 13901666 13901700 -128369744 + (CA)n Simple_repeat Simple_repeat 1 34 0 1731 165 0 32 chr9 13903066 13903375 -128368069 + AluJb SINE Alu 1 299 -13 354 110 0 122 chr9 13904100 13904182 -128367262 + L1MA10 LINE L1 6253 6324 -10 264 185 0 0 chr9 13904566 13904620 -128366824 + (CA)n Simple_repeat Simple_repeat 2 55 0 228 370 0 0 chr9 13904721 13904794 -128366650 - L2 LINE L2 -234 3038 2966 288 0 0 0 chr9 13905643 13905675 -128365769 + (TG)n Simple_repeat Simple_repeat 2 33 0 2016 89 48 7 chr9 13905680 13905951 -128365493 - AluSx SINE Alu -15 297 16 236 366 0 0 chr9 13906221 13906303 -128365141 - L2 LINE L2 0 3313 3232 321 256 47 116 chr9 13907181 13907439 -128364005 - L2 LINE L2 0 3313 3074 202 250 39 0 chr9 13907595 13907647 -128363797 + L2 LINE L2 3219 3272 0 297 0 0 0 chr9 13907996 13908029 -128363415 + (TG)n Simple_repeat Simple_repeat 2 34 0 192 289 100 56 chr9 13908329 13908419 -128363025 + MIR3 SINE MIR 6 99 -109 1155 305 72 54 chr9 13908517 13908908 -128362536 + L2 LINE L2 2346 2728 -585 1744 180 3 7 chr9 13908908 13909208 -128362236 + AluJo SINE Alu 10 308 -4 381 22 0 0 chr9 13909209 13909255 -128362189 + (CA)n Simple_repeat Simple_repeat 1 46 0 1155 305 72 54 chr9 13909255 13909803 -128361641 + L2 LINE L2 2727 3313 0 277 417 22 7 chr9 13909915 13910054 -128361390 + L2 LINE L2 3127 3267 -5 315 85 0 0 chr9 13912366 13912413 -128359031 + (TC)n Simple_repeat Simple_repeat 1 47 0 24 32 0 0 chr9 13913284 13913315 -128358129 + AT_rich Low_complexity Low_complexity 1 31 0 225 0 0 0 chr9 13914817 13914842 -128356602 + (TG)n Simple_repeat Simple_repeat 2 26 0 363 60 0 0 chr9 13915234 13915284 -128356160 + (TG)n Simple_repeat Simple_repeat 1 50 0 26 30 0 0 chr9 13915749 13915782 -128355662 + AT_rich Low_complexity Low_complexity 1 33 0 1041 252 136 19 chr9 13915837 13916433 -128355011 - Charlie7 DNA MER1_type -316 2296 1631 431 281 79 55 chr9 13916523 13916815 -128354629 - Charlie7 DNA MER1_type -2277 335 37 368 20 0 20 chr9 13917253 13917303 -128354141 + (TAAAA)n Simple_repeat Simple_repeat 2 50 0 22 35 0 0 chr9 13917591 13917620 -128353824 + AT_rich Low_complexity Low_complexity 1 29 0 2119 99 0 0 chr9 13919391 13919664 -128351780 + AluSq SINE Alu 41 313 0 578 264 99 20 chr9 13919728 13919929 -128351515 - LTR33 LTR ERVL 0 521 305 377 220 136 51 chr9 13920036 13920064 -128351380 - LTR33 LTR ERVL -380 141 117 1909 184 19 21 chr9 13920064 13920440 -128351004 - THE1C LTR MaLR 0 375 1 377 220 136 51 chr9 13920440 13920529 -128350915 - LTR33 LTR ERVL -404 117 14 208 65 87 0 chr9 13920625 13920671 -128350773 + (TA)n Simple_repeat Simple_repeat 1 50 0 23 0 0 0 chr9 13920747 13920770 -128350674 + AT_rich Low_complexity Low_complexity 1 23 0 264 353 10 0 chr9 13921377 13921479 -128349965 + MIR3 SINE MIR 97 199 -9 333 363 52 44 chr9 13922891 13923139 -128348305 + L1MEd LINE L1 964 1213 -4906 266 313 97 23 chr9 13923256 13923473 -128347971 + HAL1 LINE L1 1429 1661 -846 1332 161 158 61 chr9 13924400 13924761 -128346683 + MSTD LTR MaLR 1 396 0 27 0 0 0 chr9 13925395 13925422 -128346022 + AT_rich Low_complexity Low_complexity 1 27 0 2807 257 70 56 chr9 13925424 13926916 -128344528 - L1MC4 LINE L1 0 8042 6531 403 321 87 5 chr9 13926986 13927170 -128344274 + MIR SINE MIR 59 257 -5 280 288 0 0 chr9 13928128 13928208 -128343236 + T-rich Low_complexity Low_complexity 1 80 0 187 321 0 0 chr9 13928220 13928273 -128343171 - L2 LINE L2 -4 3309 3257 567 327 122 41 chr9 13928372 13929002 -128342442 - L2 LINE L2 -110 3203 2439 1898 101 7 64 chr9 13929700 13929998 -128341446 - MER52A-int LTR ERV1 -5113 1978 1698 3080 160 76 0 chr9 13930115 13930550 -128340894 - MER52A-int LTR ERV1 -6520 571 88 195 42 0 0 chr9 13930550 13930574 -128340870 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 3080 160 76 0 chr9 13930574 13930662 -128340782 - MER52A-int LTR ERV1 -7003 88 8 1610 196 24 0 chr9 13930669 13930960 -128340484 - MER52A LTR ERV1 0 1755 1458 4415 204 79 20 chr9 13930981 13931967 -128339477 - MER52A LTR ERV1 -711 1044 1 360 188 62 0 chr9 13931993 13932057 -128339387 - L1M1 LINE L1 -5856 1709 1642 * 14015 172 33 15 chr9 13932010 13937978 -128333466 + L1MA2 LINE L1 1640 7723 0 2078 110 10 10 chr9 13938192 13938358 -128333086 - AluSx SINE Alu -11 301 133 348 24 0 0 chr9 13938358 13938399 -128333045 + (TTA)n Simple_repeat Simple_repeat 2 42 0 2078 110 10 10 chr9 13938399 13938531 -128332913 - AluSx SINE Alu -178 134 3 642 206 18 30 chr9 13938561 13938726 -128332718 + L1ME3 LINE L1 5999 6161 -1 717 238 20 15 chr9 13938990 13939203 -128332241 + Ricksha DNA DNA 2 291 -963 * 8265 150 43 17 chr9 13939196 13939749 -128331695 + Ricksha DNA DNA 1690 2227 -1019 4109 93 0 4 chr9 13939749 13940305 -128331139 - MER41A LTR ERV1 0 554 1 8265 150 43 17 chr9 13940305 13941260 -128330184 + Ricksha DNA DNA 2227 3237 -9 23 78 0 0 chr9 13941614 13941665 -128329779 + AT_rich Low_complexity Low_complexity 1 51 0 24 0 0 0 chr9 13943199 13943223 -128328221 + AT_rich Low_complexity Low_complexity 1 24 0 381 342 8 0 chr9 13944780 13944897 -128326547 - L2 LINE L2 -1 3271 3154 276 315 74 9 chr9 13945238 13945346 -128326098 - L2 LINE L2 -4 3268 3154 462 297 78 45 chr9 13946080 13946607 -128324837 - L1M4 LINE L1 -1984 4398 3854 1717 187 20 0 chr9 13947404 13947751 -128323693 - L1MA4A LINE L1 -7 6296 5943 276 285 65 41 chr9 13948164 13948287 -128323157 + MIR3 SINE MIR 74 199 -9 435 227 97 32 chr9 13948391 13948545 -128322899 + MIR SINE MIR 97 260 -2 514 360 102 21 chr9 13948854 13949470 -128321974 + L3 LINE CR1 502 1167 -410 342 0 0 0 chr9 13949488 13949526 -128321918 + (TG)n Simple_repeat Simple_repeat 2 39 0 23 33 0 0 chr9 13950048 13950078 -128321366 + AT_rich Low_complexity Low_complexity 1 30 0 520 284 137 55 chr9 13950078 13950307 -128321137 - L2 LINE L2 -31 3282 3073 1943 122 0 14 chr9 13950307 13950685 -128320759 + AluSx SINE Alu 1 374 0 520 284 137 55 chr9 13950685 13950995 -128320449 - L2 LINE L2 -240 3073 2689 1396 205 81 9 chr9 13951973 13952305 -128319139 + MER65C LTR ERV1 106 461 0 345 125 0 0 chr9 13952677 13952733 -128318711 + (TG)n Simple_repeat Simple_repeat 1 56 0 320 227 76 68 chr9 13952741 13952873 -128318571 + L2 LINE L2 3169 3301 -12 182 323 81 10 chr9 13952994 13953093 -128318351 + L2 LINE L2 3158 3263 -9 546 186 141 0 chr9 13953942 13954098 -128317346 + MER53 DNA DNA 12 189 0 2558 182 30 9 chr9 13954209 13954221 -128317223 - L1MA4A LINE L1 -407 5776 5766 1707 174 3 9 chr9 13954221 13954555 -128316889 - L1MB3 LINE L1 -4 6179 5848 2558 182 30 9 chr9 13954555 13955101 -128316343 - L1MA4A LINE L1 -417 5766 5208 1926 221 33 14 chr9 13955085 13955655 -128315789 - L1MA4A LINE L1 -2471 3675 3095 * 277 312 9 9 chr9 13955672 13955781 -128315663 - L1M4 LINE L1 -3631 2751 2643 533 231 62 5 chr9 13955790 13955893 -128315551 - L1M4 LINE L1 -3639 2743 2647 485 58 14 0 chr9 13955893 13955962 -128315482 + (TA)n Simple_repeat Simple_repeat 1 70 0 533 231 62 5 chr9 13955962 13956053 -128315391 - L1M4 LINE L1 -3735 2647 2538 * 6883 185 79 10 chr9 13956047 13956835 -128314609 - L1M4 LINE L1 -4850 1534 802 1602 192 3 7 chr9 13956835 13956857 -128314587 - AluJb SINE Alu -6 306 285 532 24 73 0 chr9 13956857 13956939 -128314505 + (GTTTG)n Simple_repeat Simple_repeat 2 89 0 1602 192 3 7 chr9 13956939 13957223 -128314221 - AluJb SINE Alu -27 285 1 6883 185 79 10 chr9 13957223 13957847 -128313597 - L1M4 LINE L1 -5582 802 24 257 329 60 27 chr9 13958178 13958327 -128313117 - MLT1I LTR MaLR -255 154 1 295 350 52 36 chr9 13958377 13958571 -128312873 - L3 LINE CR1 -47 1530 1334 1945 156 0 0 chr9 13959379 13959662 -128311782 + AluSx SINE Alu 3 285 -27 217 355 47 9 chr9 13959969 13960076 -128311368 + MIR3 SINE MIR 12 122 -86 234 146 24 0 chr9 13960080 13960121 -128311323 + MIR SINE MIR 148 189 -73 21 36 0 0 chr9 13960388 13960416 -128311028 + AT_rich Low_complexity Low_complexity 1 28 0 198 0 0 0 chr9 13961459 13961481 -128309963 + (TC)n Simple_repeat Simple_repeat 1 22 0 369 0 0 0 chr9 13961485 13961526 -128309918 + (TG)n Simple_repeat Simple_repeat 2 42 0 228 86 0 0 chr9 13962248 13962283 -128309161 + (TC)n Simple_repeat Simple_repeat 2 36 0 520 111 12 0 chr9 13963304 13963385 -128308059 + AluJ/FRAM SINE Alu 216 297 -15 28 0 0 0 chr9 13963424 13963452 -128307992 + AT_rich Low_complexity Low_complexity 1 28 0 6862 138 27 6 chr9 13963664 13965813 -128305631 - L1MA1 LINE L1 -4 6298 4104 488 296 0 0 chr9 13967142 13967257 -128304187 - MIR3 SINE MIR -5 203 89 249 271 0 0 chr9 13967305 13967353 -128304091 - L2 LINE L2 -15 3257 3210 433 307 80 18 chr9 13967669 13967832 -128303612 - MIR SINE MIR -6 256 84 510 217 0 0 chr9 13969123 13969229 -128302215 + L1MA9 LINE L1 6171 6276 -36 215 348 11 11 chr9 13972812 13972904 -128298540 - MIR SINE MIR -3 259 168 272 343 0 10 chr9 13973705 13973807 -128297637 - Charlie7 DNA MER1_type -2511 101 1 207 262 16 16 chr9 13974080 13974141 -128297303 - L2 LINE L2 -11 3261 3201 352 328 9 0 chr9 13975688 13975804 -128295640 - MIR SINE MIR -121 141 25 318 106 0 0 chr9 13976590 13976637 -128294807 + (TG)n Simple_repeat Simple_repeat 2 48 0 1712 137 0 0 chr9 13978291 13978539 -128292905 + AluSx SINE Alu 21 268 -44 345 319 53 43 chr9 13980009 13980197 -128291247 - L2 LINE L2 -32 3281 3092 244 202 138 46 chr9 13980237 13980346 -128291098 - L2 LINE L2 -411 2903 2785 21 36 0 0 chr9 13980653 13980681 -128290763 + AT_rich Low_complexity Low_complexity 1 28 0 404 323 83 10 chr9 13981005 13981197 -128290247 - MIR SINE MIR -11 251 46 369 316 29 46 chr9 13981343 13981517 -128289927 + MIR SINE MIR 2 172 -90 22 56 0 0 chr9 13982935 13982971 -128288473 + AT_rich Low_complexity Low_complexity 1 36 0 235 329 37 0 chr9 13983325 13983407 -128288037 - L2 LINE L2 -2 3311 3227 338 354 14 51 chr9 13983421 13983636 -128287808 - L2 LINE L2 -236 3036 2830 31 58 0 0 chr9 13983913 13983965 -128287479 + AT_rich Low_complexity Low_complexity 1 52 0 3921 246 47 20 chr9 13983977 13985402 -128286042 + L1M4c LINE L1 2251 3720 -2662 343 309 111 51 chr9 13985784 13986173 -128285271 + L3 LINE CR1 708 1119 -458 1496 268 23 0 chr9 13986173 13986568 -128284876 - L1 LINE L1 -3553 2593 2190 536 164 8 67 chr9 13986550 13986580 -128284864 - L1 LINE L1 -2701 3445 3415 * 1751 153 60 44 chr9 13986580 13986946 -128284498 - THE1C LTR MaLR 0 375 4 536 164 8 67 chr9 13986946 13987049 -128284395 - L1 LINE L1 -2731 3415 3320 290 360 18 9 chr9 13987373 13987484 -128283960 - MIR3 SINE MIR -23 185 74 183 392 69 10 chr9 13988033 13988135 -128283309 + L2 LINE L2 3156 3263 -9 479 246 96 48 chr9 13988905 13989259 -128282185 + HAL1 LINE L1 2010 2380 -127 25 0 0 0 chr9 13989337 13989362 -128282082 + AT_rich Low_complexity Low_complexity 1 25 0 1053 210 48 65 chr9 13990279 13990631 -128280813 - L1MC4 LINE L1 -3 8039 7694 438 348 57 13 chr9 13990814 13991041 -128280403 + MIR SINE MIR 26 262 0 207 0 0 0 chr9 13993715 13993738 -128277706 + (A)n Simple_repeat Simple_repeat 1 23 0 1508 216 57 67 chr9 13994089 13994599 -128276845 - MLT1D LTR MaLR 0 505 1 580 354 66 8 chr9 13995055 13995419 -128276025 + L2 LINE L2 2098 2482 -832 26 64 0 0 chr9 13996650 13996697 -128274747 + AT_rich Low_complexity Low_complexity 1 47 0 257 218 106 13 chr9 13996958 13997052 -128274392 + AluY SINE Alu 132 201 -100 329 62 21 0 chr9 13997548 13997596 -128273848 + (TG)n Simple_repeat Simple_repeat 2 50 0 2329 39 42 0 chr9 13998013 13998298 -128273146 - AluY SINE Alu -14 297 1 191 214 125 0 chr9 13998343 13998399 -128273045 - MIR SINE MIR -101 161 99 5991 152 68 15 chr9 13998453 13999618 -128271826 + Tigger3b DNA MER2_type 2 1228 -3 721 149 0 0 chr9 13999791 13999905 -128271539 + FLAM_C SINE Alu 14 127 -16 332 238 267 0 chr9 14000867 14000972 -128270472 - MER102b DNA MER1_type -14 327 195 935 293 75 58 chr9 14000981 14001514 -128269930 - MER34 LTR ERV1 0 542 1 371 288 83 8 chr9 14001515 14001647 -128269797 - MER102b DNA MER1_type -164 177 36 2699 172 67 7 chr9 14001924 14002476 -128268968 + L1MA9 LINE L1 5728 6312 0 210 276 17 0 chr9 14002700 14002758 -128268686 - MIR SINE MIR 0 262 204 325 323 109 0 chr9 14002778 14002998 -128268446 - L1ME4a LINE L1 -165 5956 5713 227 338 82 36 chr9 14002998 14003279 -128268165 - MLT1L LTR MaLR -1 614 321 274 194 41 171 chr9 14003626 14003796 -128267648 - L1ME4a LINE L1 -443 5678 5531 24 32 0 0 chr9 14004019 14004050 -128267394 + AT_rich Low_complexity Low_complexity 1 31 0 2790 152 98 12 chr9 14004060 14004664 -128266780 + L1MC1 LINE L1 5197 5854 -479 855 229 5 21 chr9 14004685 14004877 -128266567 + 7SLRNA srpRNA srpRNA 111 299 -21 2556 178 13 4 chr9 14004880 14005358 -128266086 + L1MC1 LINE L1 5840 6321 -12 198 0 0 0 chr9 14005359 14005381 -128266063 + (TA)n Simple_repeat Simple_repeat 2 23 0 * 444 82 0 0 chr9 14005380 14005441 -128266003 + (TG)n Simple_repeat Simple_repeat 2 62 0 194 360 113 7 chr9 14005791 14005941 -128265503 + L2 LINE L2 2809 2974 -298 391 326 36 31 chr9 14005951 14006147 -128265297 + MIR SINE MIR 51 247 -15 204 382 56 7 chr9 14006558 14006702 -128264742 + L2 LINE L2 3161 3311 -2 1464 219 132 39 chr9 14007073 14007535 -128263909 + MLT1D LTR MaLR 1 505 0 22 0 0 0 chr9 14008975 14008997 -128262447 + AT_rich Low_complexity Low_complexity 1 22 0 1798 171 13 3 chr9 14009508 14009817 -128261627 - AluJb SINE Alu 0 312 1 419 315 61 17 chr9 14011259 14011440 -128260004 + MER5A DNA MER1_type 1 189 0 212 286 188 53 chr9 14012212 14012345 -128259099 + MIR3 SINE MIR 9 159 -49 29 70 0 0 chr9 14012404 14012461 -128258983 + AT_rich Low_complexity Low_complexity 1 57 0 620 335 61 50 chr9 14012861 14013557 -128257887 - L2 LINE L2 -245 3068 2321 14224 120 12 4 chr9 14013998 14016986 -128254458 - L1PA8A LINE L1 0 6446 3448 1058 87 19 0 chr9 14016999 14017160 -128254284 + L1P LINE L1 3865 4028 -2118 235 152 0 0 chr9 14017159 14017205 -128254239 - L1PA8A LINE L1 -3014 3447 3402 * 1146 151 234 12 chr9 14017210 14017462 -128253982 - AluSg1 SINE Alu -1 308 1 10798 170 14 41 chr9 14017462 14020010 -128251434 - L1PA12 LINE L1 -3061 3400 14 742 243 92 34 chr9 14020173 14020442 -128251002 - L1ME2 LINE L1 0 6162 5874 580 271 65 9 chr9 14020453 14020667 -128250777 - L1ME2 LINE L1 -1034 5112 4887 247 326 53 8 chr9 14021027 14021159 -128250285 + L2 LINE L2 2837 2974 -298 771 331 83 11 chr9 14021821 14022087 -128249357 - MLT1I LTR MaLR -1 408 124 515 282 50 44 chr9 14022180 14022361 -128249083 + MIR SINE MIR 75 256 -6 543 244 96 89 chr9 14022551 14022822 -128248622 - MLT1H1 LTR MaLR -196 359 87 9114 249 41 25 chr9 14022940 14024483 -128246961 - L1M4 LINE L1 -758 5388 3871 763 127 0 0 chr9 14024483 14024601 -128246843 - FLAM_C SINE Alu -15 118 1 9114 249 41 25 chr9 14024601 14026109 -128245335 - L1M4 LINE L1 -2275 3871 2285 1623 219 0 0 chr9 14026109 14026411 -128245033 - AluJb SINE Alu -9 303 2 9114 249 41 25 chr9 14026411 14026434 -128245010 - L1M4 LINE L1 -3861 2285 2264 30 45 0 0 chr9 14027590 14027634 -128243810 + AT_rich Low_complexity Low_complexity 1 44 0 750 130 0 0 chr9 14028486 14028594 -128242850 + L1PA8 LINE L1 6052 6159 -13 2832 104 17 7 chr9 14029098 14029487 -128241957 + MLT2A2 LTR ERVL 1 396 -57 534 16 0 0 chr9 14029487 14029550 -128241894 + (TA)n Simple_repeat Simple_repeat 1 63 0 2832 104 17 7 chr9 14029550 14029572 -128241872 + MLT2A2 LTR ERVL 396 416 -37 460 242 57 13 chr9 14030697 14030854 -128240590 - MER103 DNA DNA -2 164 1 239 140 20 0 chr9 14031291 14031341 -128240103 + (CA)n Simple_repeat Simple_repeat 2 52 0 185 0 40 0 chr9 14031343 14031368 -128240076 + (TTTTG)n Simple_repeat Simple_repeat 1 26 0 217 197 30 0 chr9 14031443 14031509 -128239935 + (TA)n Simple_repeat Simple_repeat 2 69 0 219 274 3 15 chr9 14031626 14031694 -128239750 + MIR SINE MIR 88 140 -68 192 40 0 0 chr9 14032508 14032533 -128238911 + (CA)n Simple_repeat Simple_repeat 2 26 0 22 0 0 0 chr9 14034020 14034042 -128237402 + AT_rich Low_complexity Low_complexity 1 22 0 186 359 51 26 chr9 14034261 14034378 -128237066 + L2 LINE L2 3148 3267 -5 2423 84 0 3 chr9 14035292 14035601 -128235843 - AluY SINE Alu -3 308 1 21 36 0 0 chr9 14035927 14035955 -128235489 + AT_rich Low_complexity Low_complexity 1 28 0 299 251 126 40 chr9 14036172 14036347 -128235097 + MIR SINE MIR 11 200 -62 292 282 23 30 chr9 14036465 14036596 -128234848 + GA-rich Low_complexity Low_complexity 3 132 0 189 0 0 0 chr9 14037424 14037445 -128233999 + (T)n Simple_repeat Simple_repeat 1 21 0 1613 187 14 10 chr9 14037458 14037752 -128233692 - 7SLRNA srpRNA srpRNA -13 307 13 243 61 0 0 chr9 14038876 14038909 -128232535 + (TC)n Simple_repeat Simple_repeat 2 34 0 494 197 27 158 chr9 14039806 14039883 -128231561 + Tigger3(Golem) DNA MER2_type 1 86 -2942 2145 95 21 0 chr9 14039883 14040168 -128231276 + AluSp SINE Alu 1 291 -22 494 197 27 158 chr9 14040168 14040273 -128231171 + Tigger3(Golem) DNA MER2_type 86 2585 -443 232 103 0 0 chr9 14040245 14040284 -128231160 + Tigger3(Golem) DNA MER2_type 2771 2809 -220 * 1321 174 55 0 chr9 14040448 14040683 -128230761 + Tigger3(Golem) DNA MER2_type 2790 3037 0 826 157 0 15 chr9 14040783 14040917 -128230527 - FLAM_C SINE Alu 0 133 2 184 367 89 6 chr9 14040940 14041120 -128230324 + MIR SINE MIR 55 249 -13 204 67 0 0 chr9 14042379 14042409 -128229035 + (TTG)n Simple_repeat Simple_repeat 2 31 0 2225 91 0 0 chr9 14042413 14042687 -128228757 - AluSc SINE Alu -33 276 3 1291 214 162 15 chr9 14042817 14043224 -128228220 + MLT1C LTR MaLR 1 467 0 1616 205 44 48 chr9 14043398 14043832 -128227612 - MER63B DNA MER1_type -4 432 1 1085 191 0 43 chr9 14045559 14045790 -128225654 - AluJo SINE Alu -6 306 86 204 125 0 0 chr9 14046188 14046220 -128225224 + (CATATA)n Simple_repeat Simple_repeat 2 33 0 201 213 0 0 chr9 14048557 14048604 -128222840 + (CGG)n Simple_repeat Simple_repeat 3 49 0 278 274 78 29 chr9 14049564 14049666 -128221778 + MIR3 SINE MIR 71 177 -31 510 67 53 0 chr9 14050624 14050699 -128220745 + MADE1 DNA Mariner 2 80 0 389 308 68 0 chr9 14051013 14051159 -128220285 + MIR SINE MIR 53 208 -54 188 275 0 0 chr9 14051448 14051488 -128219956 - L2 LINE L2 -16 3256 3217 1312 159 112 35 chr9 14051566 14051880 -128219564 - MER44D DNA MER2_type 0 609 2 319 278 154 84 chr9 14051892 14051972 -128219472 - MIR SINE MIR -14 248 175 2497 59 13 0 chr9 14051972 14052275 -128219169 - AluY SINE Alu -4 307 1 319 278 154 84 chr9 14052275 14052421 -128219023 - MIR SINE MIR -87 175 6 260 189 19 0 chr9 14053197 14053250 -128218194 - MIR SINE MIR -111 151 98 24 53 0 0 chr9 14053428 14053466 -128217978 + AT_rich Low_complexity Low_complexity 1 38 0 9251 155 28 7 chr9 14053601 14053664 -128217780 - L1MA3 LINE L1 -106 7618 7558 2309 78 3 0 chr9 14053664 14053976 -128217468 - AluSp SINE Alu 0 313 1 9251 155 28 7 chr9 14053976 14056541 -128214903 - L1MA3 LINE L1 -166 7558 4929 9676 176 189 19 chr9 14056557 14058667 -128212777 - L1MA3 LINE L1 -5091 2474 8 331 289 0 35 chr9 14058765 14058879 -128212565 - MIR SINE MIR -1 261 152 359 40 0 20 chr9 14059238 14059288 -128212156 + (TA)n Simple_repeat Simple_repeat 1 49 0 240 86 0 0 chr9 14060028 14060063 -128211381 + (TATATG)n Simple_repeat Simple_repeat 4 38 0 261 357 10 0 chr9 14060278 14060376 -128211068 - L3 LINE CR1 -87 1490 1392 1866 152 31 0 chr9 14060536 14060915 -128210529 + AluSx SINE Alu 1 388 0 437 270 77 61 chr9 14061013 14061339 -128210105 + L1ME4a LINE L1 5496 5826 -295 333 214 71 64 chr9 14061388 14061528 -128209916 + L1ME4a LINE L1 5961 6101 -20 924 203 5 42 chr9 14061549 14061766 -128209678 + AluJo SINE Alu 65 273 -39 195 42 0 0 chr9 14061797 14061821 -128209623 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 23 0 0 0 chr9 14062811 14062834 -128208610 + AT_rich Low_complexity Low_complexity 1 23 0 461 187 32 24 chr9 14064216 14064339 -128207105 - L1MC4 LINE L1 0 8042 7919 183 80 0 0 chr9 14064349 14064374 -128207070 + (TC)n Simple_repeat Simple_repeat 1 25 0 216 0 0 0 chr9 14064395 14064419 -128207025 + (CA)n Simple_repeat Simple_repeat 2 25 0 205 329 82 14 chr9 14067819 14067965 -128203479 + L2 LINE L2 2885 3040 -232 24 32 0 0 chr9 14068087 14068118 -128203326 + AT_rich Low_complexity Low_complexity 1 31 0 243 362 73 34 chr9 14070115 14070292 -128201152 + MIR3 SINE MIR 17 200 -8 2385 65 20 0 chr9 14070616 14070909 -128200535 + AluY SINE Alu 1 299 -12 984 199 39 31 chr9 14070932 14071188 -128200256 - L1MA9 LINE L1 -40 6272 6015 306 289 78 82 chr9 14071216 14071448 -128199996 - MIR SINE MIR -4 258 28 1152 129 12 0 chr9 14071728 14071898 -128199546 + MSTA LTR MaLR 257 428 0 215 136 68 0 chr9 14072449 14072493 -128198951 + (TATG)n Simple_repeat Simple_repeat 2 48 0 2284 140 46 10 chr9 14073263 14073676 -128197768 + MSTA LTR MaLR 1 428 0 313 404 67 5 chr9 14074284 14074477 -128196967 - MIR3 SINE MIR -2 206 2 1995 143 7 0 chr9 14075364 14075658 -128195786 - AluSx SINE Alu -14 298 3 29 47 0 0 chr9 14075680 14075723 -128195721 + AT_rich Low_complexity Low_complexity 1 43 0 362 197 66 0 chr9 14075893 14075969 -128195475 + MER58A DNA MER1_type 18 98 -9 22 0 0 0 chr9 14076037 14076059 -128195385 + AT_rich Low_complexity Low_complexity 1 22 0 1129 212 28 107 chr9 14077135 14077631 -128193813 - LTR37B LTR ERV1 0 468 12 566 14 0 0 chr9 14077990 14078063 -128193381 + AluY SINE Alu 232 304 -5 1472 67 62 0 chr9 14078070 14078112 -128193332 + AluY SINE Alu 80 118 -193 216 0 0 0 chr9 14078112 14078136 -128193308 + (TA)n Simple_repeat Simple_repeat 2 25 0 1472 67 62 0 chr9 14078136 14078286 -128193158 + AluY SINE Alu 118 284 -27 255 79 0 0 chr9 14078286 14078324 -128193120 + (CTAA)n Simple_repeat Simple_repeat 3 40 0 219 299 77 34 chr9 14078450 14078567 -128192877 + MIR SINE MIR 21 142 -120 7497 177 109 71 chr9 14078573 14079345 -128192099 - L1MCa LINE L1 -3881 2545 1804 973 92 0 7 chr9 14079345 14079487 -128191957 - L1MB3 LINE L1 -7 6176 6036 7497 177 109 71 chr9 14079487 14079876 -128191568 - L1MCa LINE L1 -4622 1804 1431 2188 172 52 7 chr9 14079876 14080284 -128191160 - MSTB LTR MaLR 0 426 1 7497 177 109 71 chr9 14080284 14081552 -128189892 - L1MCa LINE L1 -4995 1431 23 224 320 26 0 chr9 14081606 14081684 -128189760 + MIR SINE MIR 183 262 0 180 0 0 0 chr9 14081900 14081920 -128189524 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1588 257 44 55 chr9 14082740 14083288 -128188156 - MLT1F LTR MaLR 0 542 1 197 211 0 0 chr9 14083288 14083326 -128188118 + MER5A DNA MER1_type 37 74 -115 3006 206 87 51 chr9 14084155 14085177 -128186267 - MER63D DNA MER1_type 0 1061 3 258 233 11 78 chr9 14087378 14087468 -128183976 - MIR SINE MIR -57 151 68 1272 148 95 15 chr9 14088036 14088300 -128183144 - L1MA5A LINE L1 -4 6293 6009 402 256 22 0 chr9 14088391 14088481 -128182963 + Charlie1 DNA MER1_type 1 92 -2669 2184 109 0 0 chr9 14088567 14088870 -128182574 + AluY SINE Alu 9 311 0 4490 170 96 36 chr9 14088870 14089996 -128181448 + Charlie1 DNA MER1_type 1564 2756 -5 259 254 94 85 chr9 14090339 14090658 -128180786 + L1ME4a LINE L1 5797 6118 -3 622 245 97 46 chr9 14090703 14091095 -128180349 + L1ME4a LINE L1 5675 6086 -35 22 0 0 0 chr9 14091505 14091527 -128179917 + AT_rich Low_complexity Low_complexity 1 22 0 1816 221 34 86 chr9 14092522 14092835 -128178609 + L1M4 LINE L1 3170 3498 -2648 1882 151 24 0 chr9 14092835 14093126 -128178318 + AluSx SINE Alu 1 298 -14 1816 221 34 86 chr9 14093126 14093581 -128177863 + L1M4 LINE L1 3498 3898 -2248 325 300 83 8 chr9 14094127 14094247 -128177197 - MLT1J LTR MaLR -253 258 130 973 280 83 21 chr9 14094247 14094617 -128176827 + MLT1I LTR MaLR 1 393 -16 1513 194 127 17 chr9 14094617 14095020 -128176424 + Charlie1b DNA MER1_type 1 447 -76 597 231 15 15 chr9 14095544 14095674 -128175770 + FLAM_A SINE Alu 1 130 -3 2304 59 0 7 chr9 14095857 14096147 -128175297 + AluY SINE Alu 24 311 0 2206 92 0 0 chr9 14096603 14096913 -128174531 + AluSx SINE Alu 1 310 0 206 264 38 0 chr9 14097737 14097790 -128173654 - L2 LINE L2 -8 3305 3251 1180 148 160 49 chr9 14097830 14098093 -128173351 - AluJb SINE Alu -10 292 1 2221 68 4 0 chr9 14099059 14099339 -128172105 + AluY SINE Alu 1 281 -30 293 267 95 26 chr9 14099664 14099780 -128171664 + MIR SINE MIR 124 247 -15 433 276 126 15 chr9 14101875 14102074 -128169370 - MIR SINE MIR -5 257 37 2162 69 0 7 chr9 14103328 14103603 -128167841 + AluY SINE Alu 35 307 -4 1778 161 10 0 chr9 14103634 14103925 -128167519 - AluJb SINE Alu -5 307 14 701 219 0 0 chr9 14103953 14104081 -128167363 + FLAM_A SINE Alu 1 128 -5 2598 288 97 15 chr9 14104109 14105369 -128166075 + L2 LINE L2 1923 3302 -11 298 241 46 56 chr9 14105407 14105515 -128165929 - L2 LINE L2 -17 3255 3149 1005 171 136 64 chr9 14105524 14105804 -128165640 + MLT1D LTR MaLR 3 302 -203 618 246 66 6 chr9 14106912 14107079 -128164365 + MIR SINE MIR 85 261 -1 268 301 32 0 chr9 14107249 14107342 -128164102 + MLT1J LTR MaLR 106 201 -310 26 74 0 0 chr9 14108045 14108099 -128163345 + AT_rich Low_complexity Low_complexity 1 54 0 8872 103 19 7 chr9 14108877 14110149 -128161295 - HSMAR1 DNA Mariner 0 1287 1 31 44 0 0 chr9 14111211 14111256 -128160188 + AT_rich Low_complexity Low_complexity 1 45 0 42 36 0 0 chr9 14111902 14111958 -128159486 + AT_rich Low_complexity Low_complexity 1 56 0 2202 108 7 0 chr9 14112044 14112351 -128159093 - AluSc SINE Alu 0 309 1 279 125 0 0 chr9 14112618 14112658 -128158786 - Alu SINE Alu -260 41 2 909 171 74 11 chr9 14112660 14112835 -128158609 - MER47A DNA MER2_type -180 186 1 1806 170 0 0 chr9 14114881 14115157 -128156287 + AluSx SINE Alu 1 276 -36 189 0 0 0 chr9 14115157 14115178 -128156266 + (TG)n Simple_repeat Simple_repeat 2 22 0 407 263 126 63 chr9 14115317 14115953 -128155491 + L1MC5 LINE L1 7260 7935 -26 1979 286 60 21 chr9 14116002 14116813 -128154631 - L1ME LINE L1 -5201 869 27 2482 265 93 23 chr9 14117645 14118858 -128152586 - L1ME LINE L1 -2889 3191 1902 1602 222 22 17 chr9 14118858 14119219 -128152225 + MLT1A1 LTR MaLR 1 363 -2 2482 265 93 23 chr9 14119219 14119344 -128152100 - L1ME LINE L1 -4178 1902 1787 1840 161 0 31 chr9 14119418 14119740 -128151704 + AluJb SINE Alu 1 312 0 816 284 83 75 chr9 14119750 14120999 -128150445 - L1ME LINE L1 -4693 1568 324 1734 200 33 80 chr9 14121400 14121443 -128150001 + MLT1A1 LTR MaLR 3 46 -319 837 152 8 0 chr9 14121443 14121575 -128149869 + FLAM_C SINE Alu 1 133 0 1734 200 33 80 chr9 14121575 14121921 -128149523 + MLT1A1 LTR MaLR 46 365 0 339 292 51 36 chr9 14121939 14122076 -128149368 - L1ME LINE L1 -5855 215 77 250 122 0 0 chr9 14122076 14122117 -128149327 + U5 snRNA snRNA 1 41 -75 468 0 0 0 chr9 14124419 14124471 -128146973 + (CA)n Simple_repeat Simple_repeat 2 53 0 278 300 12 0 chr9 14124542 14124702 -128146742 + (TA)n Simple_repeat Simple_repeat 1 162 0 231 184 35 0 chr9 14124737 14124824 -128146620 + (TA)n Simple_repeat Simple_repeat 1 90 0 312 327 25 6 chr9 14125813 14125972 -128145472 + L1ME4a LINE L1 5589 5750 -371 27 49 0 0 chr9 14126008 14126049 -128145395 + AT_rich Low_complexity Low_complexity 1 41 0 26 50 0 0 chr9 14126068 14126108 -128145336 + AT_rich Low_complexity Low_complexity 1 40 0 391 310 78 4 chr9 14126117 14126362 -128145082 + L1ME3A LINE L1 5683 5945 -225 281 235 17 109 chr9 14126435 14126554 -128144890 + L1ME3A LINE L1 5965 6072 -98 2585 98 8 11 chr9 14126680 14127056 -128144388 - THE1C LTR MaLR 0 375 1 1542 43 0 34 chr9 14127854 14128061 -128143383 + L1PA5 LINE L1 5955 6154 0 21 0 0 0 chr9 14128414 14128435 -128143009 + AT_rich Low_complexity Low_complexity 1 21 0 300 381 0 0 chr9 14130441 14130546 -128140898 + GA-rich Low_complexity Low_complexity 4 108 0 370 296 61 0 chr9 14131457 14131555 -128139889 + L2 LINE L2 3150 3253 -19 272 404 31 15 chr9 14132192 14132452 -128138992 + LTR16C LTR ERVL 215 478 -13 763 360 92 14 chr9 14132562 14133140 -128138304 + MERVL LTR ERVL 2637 3259 -2226 186 71 0 0 chr9 14133527 14133555 -128137889 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 468 263 9 9 chr9 14133559 14133673 -128137771 - FLAM_A SINE Alu -19 114 1 386 290 94 12 chr9 14134542 14134707 -128136737 + L1ME4a LINE L1 5845 6066 -55 23 33 0 0 chr9 14134707 14134737 -128136707 + AT_rich Low_complexity Low_complexity 1 30 0 386 290 94 12 chr9 14134737 14134797 -128136647 + L1ME4a LINE L1 6066 6120 -1 1885 161 0 0 chr9 14136050 14136336 -128135108 + AluSx SINE Alu 3 288 -24 273 29 0 0 chr9 14136337 14136371 -128135073 + (GGAA)n Simple_repeat Simple_repeat 1 34 0 25 31 0 0 chr9 14136412 14136444 -128135000 + AT_rich Low_complexity Low_complexity 1 32 0 2112 138 0 13 chr9 14136655 14136959 -128134485 + AluSx SINE Alu 1 300 -12 783 263 6 0 chr9 14136984 14137159 -128134285 + MER45A DNA AcHobo 1 176 -2 265 250 0 0 chr9 14137706 14137758 -128133686 - L2 LINE L2 -38 3234 3183 1448 214 7 23 chr9 14137769 14138078 -128133366 - AluJo SINE Alu -8 304 1 505 208 9 28 chr9 14138365 14138471 -128132973 + L2 LINE L2 3210 3313 0 26 0 0 0 chr9 14139521 14139547 -128131897 + AT_rich Low_complexity Low_complexity 1 26 0 417 210 0 0 chr9 14139601 14139682 -128131762 + MIR SINE MIR 182 262 0 247 197 49 131 chr9 14139684 14139806 -128131638 - MIR SINE MIR -70 192 81 362 309 53 27 chr9 14140069 14140257 -128131187 - L2 LINE L2 -2 3311 3119 29 0 0 0 chr9 14140418 14140447 -128130997 + AT_rich Low_complexity Low_complexity 1 29 0 1443 123 0 0 chr9 14140460 14140655 -128130789 + AluSx SINE Alu 3 197 -115 948 191 5 36 chr9 14140798 14140992 -128130452 - MER5A DNA MER1_type -1 188 1 23 33 0 0 chr9 14143100 14143130 -128128314 + AT_rich Low_complexity Low_complexity 1 30 0 231 358 20 20 chr9 14143326 14143474 -128127970 + MIR SINE MIR 114 261 -1 22 0 0 0 chr9 14143560 14143582 -128127862 + AT_rich Low_complexity Low_complexity 1 22 0 27898 99 8 3 chr9 14143716 14148655 -128122789 - L1PA7 LINE L1 -11 6143 1178 1579 157 92 0 chr9 14148875 14149156 -128122288 - AluJb SINE Alu -5 307 1 1131 143 67 13 chr9 14149357 14149581 -128121863 - Tigger2 DNA MER2_type 0 2718 2483 84 36 0 0 chr9 14149581 14149693 -128121751 + AT_rich Low_complexity Low_complexity 1 112 0 1365 143 5 5 chr9 14149693 14149910 -128121534 - Tigger2 DNA MER2_type -234 2484 2268 1555 201 6 13 chr9 14149913 14150226 -128121218 + AluSx SINE Alu 1 311 -1 363 191 0 0 chr9 14150231 14150294 -128121150 - Tigger2 DNA MER2_type -2655 63 1 210 268 0 18 chr9 14150485 14150541 -128120903 + MIR SINE MIR 197 251 -11 732 260 46 25 chr9 14151972 14152321 -128119123 + L1MB1 LINE L1 3085 3449 -4116 703 224 0 0 chr9 14152322 14152456 -128118988 + AluJo SINE Alu 1 134 -178 410 250 8 0 chr9 14152457 14152577 -128118867 + L1MB1 LINE L1 3447 3567 -4000 856 170 14 7 chr9 14152613 14152760 -128118684 - AluJb SINE Alu -20 292 145 3747 78 10 10 chr9 14152794 14153308 -128118136 + L1PA10 LINE L1 5654 6167 -1 21 0 0 0 chr9 14153311 14153332 -128118112 + AT_rich Low_complexity Low_complexity 1 21 0 1151 255 10 3 chr9 14153339 14153637 -128117807 + L1MB1 LINE L1 6082 6381 -1184 430 205 0 0 chr9 14153779 14153857 -128117587 - AluJ/FRAM SINE Alu -19 293 216 4591 194 19 9 chr9 14153871 14155096 -128116348 + L1MB1 LINE L1 6344 7583 -4 293 250 0 42 chr9 14155234 14155306 -128116138 + L2 LINE L2 3241 3309 -4 229 342 13 0 chr9 14155733 14155809 -128115635 - L2 LINE L2 -299 2973 2897 3994 127 28 8 chr9 14156055 14156707 -128114737 + Tigger3b DNA MER2_type 32 696 -535 1227 125 198 32 chr9 14156703 14156951 -128114493 + Tigger3b DNA MER2_type 944 1232 0 * 201 39 0 0 chr9 14158621 14158647 -128112797 + (TA)n Simple_repeat Simple_repeat 2 27 0 23 33 0 0 chr9 14158657 14158687 -128112757 + AT_rich Low_complexity Low_complexity 1 30 0 212 331 55 31 chr9 14159020 14159147 -128112297 - L2 LINE L2 -830 2484 2355 21 0 0 0 chr9 14159284 14159305 -128112139 + AT_rich Low_complexity Low_complexity 1 21 0 186 103 0 0 chr9 14160332 14160361 -128111083 + (TG)n Simple_repeat Simple_repeat 2 30 0 31 96 0 0 chr9 14160648 14160742 -128110702 + AT_rich Low_complexity Low_complexity 1 94 0 1302 53 0 24 chr9 14160825 14160994 -128110450 + AluY SINE Alu 134 298 -13 25 51 0 0 chr9 14161950 14161989 -128109455 + AT_rich Low_complexity Low_complexity 1 39 0 24 0 0 0 chr9 14162155 14162179 -128109265 + AT_rich Low_complexity Low_complexity 1 24 0 5310 20 0 0 chr9 14162914 14163524 -128107920 + L1PA2 LINE L1 5545 6154 -1 499 176 0 11 chr9 14164212 14164303 -128107141 + HY4 scRNA scRNA 1 90 -3 340 229 42 76 chr9 14164861 14164979 -128106465 + MIR3 SINE MIR 54 167 -41 2154 175 56 10 chr9 14165354 14165766 -128105678 - MSTB1 LTR MaLR -1 431 1 867 283 88 34 chr9 14166039 14166538 -128104906 + L2 LINE L2 1447 1972 -1342 20223 160 70 53 chr9 14166543 14166609 -128104835 + L1MA2 LINE L1 13 76 -7647 2381 71 3 13 chr9 14166609 14166919 -128104525 - AluY SINE Alu -4 307 1 20223 160 70 53 chr9 14166919 14169879 -128101565 + L1MA2 LINE L1 76 2985 -4738 2034 121 16 23 chr9 14169879 14170185 -128101259 + AluSc SINE Alu 1 304 -5 20223 160 70 53 chr9 14170185 14172558 -128098886 + L1MA2 LINE L1 2985 5317 -2406 1966 163 28 17 chr9 14172558 14172913 -128098531 - THE1C LTR MaLR 0 375 17 20223 160 70 53 chr9 14172913 14174746 -128096698 + L1MA2 LINE L1 5317 7723 0 228 242 91 0 chr9 14174758 14174824 -128096620 + L2 LINE L2 1996 2067 -1247 357 238 73 78 chr9 14174825 14175031 -128096413 - L1ME3A LINE L1 -1 6169 5965 233 200 0 38 chr9 14175113 14175193 -128096251 - L1MC5 LINE L1 -431 7530 7454 617 314 34 25 chr9 14175278 14175517 -128095927 + L2 LINE L2 2461 2701 -613 713 265 88 8 chr9 14175590 14175839 -128095605 - L1MC4 LINE L1 -233 7809 7541 712 162 14 21 chr9 14175849 14175991 -128095453 - L1MC1 LINE L1 0 6333 6193 1165 141 0 198 chr9 14175994 14176362 -128095082 + L1MC2 LINE L1 5907 6201 -143 1163 123 5 5 chr9 14176380 14176575 -128094869 - L1MC1 LINE L1 -435 5898 5704 1327 123 50 3 chr9 14176577 14176895 -128094549 - L1MCa LINE L1 -4128 2298 1926 2816 16 0 0 chr9 14176896 14177207 -128094237 + AluYa5 SINE Alu 1 311 0 3843 192 23 54 chr9 14177315 14177911 -128093533 - L1MCa LINE L1 -5518 908 295 237 65 0 0 chr9 14177911 14177942 -128093502 + (TTTG)n Simple_repeat Simple_repeat 1 31 0 1812 161 0 0 chr9 14177946 14178220 -128093224 - AluSx SINE Alu -37 275 2 3843 192 23 54 chr9 14178220 14178474 -128092970 - L1MCa LINE L1 -6134 292 79 2018 251 238 22 chr9 14178505 14179374 -128092070 - L1MC4 LINE L1 -528 7514 6458 1777 156 38 27 chr9 14179824 14180195 -128091249 + THE1C LTR MaLR 1 375 0 484 289 93 81 chr9 14180215 14180821 -128090623 + L2 LINE L2 2687 3309 -4 230 346 0 25 chr9 14181298 14181379 -128090065 + L2 LINE L2 3232 3310 -3 21 71 0 0 chr9 14181786 14181828 -128089616 + AT_rich Low_complexity Low_complexity 1 42 0 1911 119 0 0 chr9 14183294 14183562 -128087882 + AluSq SINE Alu 46 313 0 2164 103 3 3 chr9 14183650 14183941 -128087503 + AluSg1 SINE Alu 1 291 -18 316 269 14 92 chr9 14184009 14184150 -128087294 + MIR3 SINE MIR 13 142 -66 208 239 0 0 chr9 14185011 14185057 -128086387 + CT-rich Low_complexity Low_complexity 2 47 0 1817 145 46 36 chr9 14185144 14185448 -128085996 + AluSx SINE Alu 4 310 -2 190 261 0 90 chr9 14186053 14186164 -128085280 + MIR SINE MIR 147 247 -15 660 191 41 7 chr9 14186735 14186882 -128084562 - MER3 DNA MER1_type -10 199 48 2260 167 101 83 chr9 14186892 14187563 -128083881 - LTR8 LTR ERV1 -8 683 1 2198 122 10 0 chr9 14188461 14188755 -128082689 + AluSx SINE Alu 1 297 -15 35 0 0 0 chr9 14189251 14189286 -128082158 + AT_rich Low_complexity Low_complexity 1 35 0 345 215 20 40 chr9 14190117 14190138 -128081306 - L1MA10 LINE L1 -3 6331 6311 1079 222 43 40 chr9 14190138 14190490 -128080954 - L1ME2 LINE L1 -12 6152 5800 1439 246 39 47 chr9 14190548 14191040 -128080404 - MLT1E2 LTR MaLR 0 626 139 354 23 0 0 chr9 14191167 14191210 -128080234 + (TG)n Simple_repeat Simple_repeat 2 44 0 426 256 50 8 chr9 14191789 14191910 -128079534 + MER115 DNA AcHobo 567 692 -1 243 333 62 6 chr9 14191989 14192151 -128079293 - L1MEd LINE L1 -5663 456 286 1853 155 3 3 chr9 14192506 14192824 -128078620 + AluSx SINE Alu 1 318 0 642 347 70 66 chr9 14192990 14193734 -128077710 + L2 LINE L2 2288 3032 -240 230 261 225 29 chr9 14193913 14194051 -128077393 + MIR3 SINE MIR 20 184 -24 24 32 0 0 chr9 14194404 14194435 -128077009 + AT_rich Low_complexity Low_complexity 1 31 0 183 182 61 0 chr9 14194529 14194595 -128076849 + (TGAA)n Simple_repeat Simple_repeat 1 70 0 446 316 15 25 chr9 14195143 14195339 -128076105 + L2 LINE L2 3118 3311 -2 561 84 0 0 chr9 14196509 14196580 -128074864 - AluS SINE Alu -232 80 10 280 172 172 13 chr9 14197136 14197287 -128074157 + MER33 DNA MER1_type 48 222 -102 398 148 69 0 chr9 14197362 14197463 -128073981 + MER33 DNA MER1_type 171 278 -46 578 240 176 28 chr9 14197881 14198240 -128073204 + L1MC5 LINE L1 7474 7885 -76 27 0 0 0 chr9 14198980 14199007 -128072437 + AT_rich Low_complexity Low_complexity 1 27 0 281 358 74 20 chr9 14199327 14199475 -128071969 - L2 LINE L2 -1 3271 3116 2219 122 0 0 chr9 14200803 14201098 -128070346 + AluSx SINE Alu 1 295 -17 236 233 244 22 chr9 14201563 14201743 -128069701 - MLT1L LTR MaLR -80 535 316 348 183 0 0 chr9 14201844 14201904 -128069540 - MER81 DNA DNA 0 114 55 542 261 0 39 chr9 14202065 14202245 -128069199 - MER5B DNA MER1_type -4 174 2 505 336 85 9 chr9 14202962 14203185 -128068259 - MIR SINE MIR -21 241 2 268 298 63 31 chr9 14203896 14204033 -128067411 + MIR3 SINE MIR 26 169 -39 2812 128 14 0 chr9 14204445 14204873 -128066571 - MER57B LTR ERV1 0 434 1 2522 137 31 19 chr9 14204884 14205478 -128065966 + MER4E LTR ERV1 1 779 0 706 163 111 58 chr9 14205762 14205952 -128065492 - MER3 DNA MER1_type 0 209 10 26 0 0 0 chr9 14206999 14207025 -128064419 + AT_rich Low_complexity Low_complexity 1 26 0 2229 110 3 10 chr9 14207032 14207333 -128064111 + AluSp SINE Alu 1 299 -14 185 176 137 0 chr9 14207432 14207483 -128063961 - MIR SINE MIR -98 164 107 714 306 103 16 chr9 14207548 14207973 -128063471 - MLT1K LTR MaLR 0 588 127 437 164 58 174 chr9 14208241 14208448 -128062996 + MLT1D LTR MaLR 5 187 -318 705 243 17 6 chr9 14209810 14209983 -128061461 - LTR40a LTR ERVL -344 175 1 377 255 128 4 chr9 14210883 14211268 -128060176 - L1MC4a LINE L1 -216 5905 5523 252 359 0 13 chr9 14211742 14211820 -128059624 + MIR SINE MIR 3 79 -183 446 303 73 18 chr9 14212244 14212409 -128059035 + MIR SINE MIR 77 250 -12 268 221 263 0 chr9 14212431 14212526 -128058918 + L2 LINE L2 3192 3311 -2 1519 128 0 9 chr9 14212738 14212965 -128058479 - AluJb SINE Alu -4 308 84 23 0 0 0 chr9 14214518 14214541 -128056903 + AT_rich Low_complexity Low_complexity 1 23 0 314 370 25 0 chr9 14214759 14214878 -128056566 - L2 LINE L2 -17 3255 3134 22 35 0 0 chr9 14214903 14214932 -128056512 + AT_rich Low_complexity Low_complexity 1 29 0 332 222 0 0 chr9 14215165 14215237 -128056207 - MIR SINE MIR -21 241 170 2167 134 0 0 chr9 14215606 14215913 -128055531 + AluSx SINE Alu 1 307 -5 1047 63 0 0 chr9 14216073 14216229 -128055215 + AluY SINE Alu 170 325 0 215 253 160 13 chr9 14217327 14217402 -128054042 - L2 LINE L2 -1 3271 3186 2456 92 0 0 chr9 14217736 14218039 -128053405 + AluSx SINE Alu 1 303 -9 306 309 206 6 chr9 14218973 14219138 -128052306 + MIR SINE MIR 45 242 -20 22 35 0 0 chr9 14221058 14221087 -128050357 + AT_rich Low_complexity Low_complexity 1 29 0 728 187 0 8 chr9 14221087 14221210 -128050234 + FLAM_C SINE Alu 1 122 -21 3602 45 2 0 chr9 14221552 14221995 -128049449 + L1PA6 LINE L1 5708 6151 -3 25 0 0 0 chr9 14222202 14222227 -128049217 + AT_rich Low_complexity Low_complexity 1 25 0 322 250 130 10 chr9 14223406 14223506 -128047938 - L2 LINE L2 -22 3291 3180 287 127 0 36 chr9 14223508 14223563 -128047881 - MLT2B1 LTR ERVL 0 520 468 282 250 0 0 chr9 14223651 14223739 -128047705 + (TA)n Simple_repeat Simple_repeat 2 89 0 1030 209 45 126 chr9 14223739 14224183 -128047261 - MLT2B1 LTR ERVL -40 480 73 552 281 21 68 chr9 14224205 14224486 -128046958 + L2 LINE L2 2212 2479 -835 451 371 38 26 chr9 14224769 14225082 -128046362 + L2 LINE L2 2872 3188 -84 1699 177 7 30 chr9 14225702 14226001 -128045443 - AluJo SINE Alu -20 292 1 3203 56 2 71 chr9 14226039 14226520 -128044924 + LTR7 LTR ERV1 1 448 -2 18764 85 41 18 chr9 14226522 14229441 -128042003 + HERVH LTR ERV1 1 2987 -4726 804 149 20 0 chr9 14229435 14229583 -128041861 + HERVH LTR ERV1 3140 3290 -4423 * 3152 113 4 10 chr9 14229573 14230078 -128041366 + HERVH LTR ERV1 3492 3993 -3720 4063 140 1 3 chr9 14230080 14230743 -128040701 + HERVH LTR ERV1 4488 5149 -2564 1280 120 18 40 chr9 14230744 14230969 -128040475 + HERVH LTR ERV1 5600 5819 -1894 2196 88 59 13 chr9 14230969 14231342 -128040102 + HERVH LTR ERV1 7324 7713 0 3222 54 2 71 chr9 14231342 14231823 -128039621 + LTR7 LTR ERV1 1 448 -2 24 32 0 0 chr9 14231931 14231962 -128039482 + AT_rich Low_complexity Low_complexity 1 31 0 2195 206 40 6 chr9 14231970 14232471 -128038973 - MLT1F1 LTR MaLR 0 567 50 1184 98 10 26 chr9 14232500 14232694 -128038750 - L1PB1 LINE L1 -2 6149 5959 457 105 51 13 chr9 14232789 14232928 -128038516 - L1PBa LINE L1 -5463 1400 1112 2230 84 0 3 chr9 14232928 14233239 -128038205 + AluY SINE Alu 1 310 0 1785 132 0 4 chr9 14233346 14233597 -128037847 - AluSc SINE Alu -59 250 1 207 231 0 46 chr9 14233623 14233688 -128037756 + CT-rich Low_complexity Low_complexity 5 66 0 297 345 98 5 chr9 14233831 14234034 -128037410 - HERV16 LTR ERVL -3422 1574 1353 529 347 10 40 chr9 14234043 14234343 -128037101 - HERV16 LTR ERVL -3760 1236 946 567 230 32 28 chr9 14234347 14234571 -128036873 - MER61D LTR ERV1 0 743 222 765 350 34 11 chr9 14235115 14235583 -128035861 - HERV16 LTR ERVL -4154 842 364 978 294 72 11 chr9 14235906 14236280 -128035164 - LTR16A LTR ERVL -8 442 46 205 300 11 33 chr9 14237801 14237891 -128033553 - MIR SINE MIR -70 192 105 833 256 125 14 chr9 14238280 14238631 -128032813 + L1MC4 LINE L1 7525 7914 -128 34 24 0 0 chr9 14238644 14238685 -128032759 + AT_rich Low_complexity Low_complexity 1 41 0 418 153 66 3 chr9 14238685 14239028 -128032416 + (TA)n Simple_repeat Simple_repeat 1 364 0 284 280 54 0 chr9 14239031 14239124 -128032320 + L1MC4 LINE L1 7929 8026 -16 821 241 73 8 chr9 14240833 14241078 -128030366 + MIR SINE MIR 1 261 -1 191 284 42 63 chr9 14241412 14241507 -128029937 + L2 LINE L2 3140 3232 -40 3046 100 33 113 chr9 14242243 14242851 -128028593 - L1PA12 LINE L1 -16 6152 5594 2379 94 0 0 chr9 14243643 14243950 -128027494 + AluSc SINE Alu 1 307 -2 798 251 126 46 chr9 14243975 14244453 -128026991 - MLT1G3 LTR MaLR -5 537 2 270 136 0 0 chr9 14244591 14244635 -128026809 + (TG)n Simple_repeat Simple_repeat 1 44 0 26 74 0 0 chr9 14245596 14245650 -128025794 + AT_rich Low_complexity Low_complexity 1 54 0 381 317 83 24 chr9 14245662 14245952 -128025492 + L1M4 LINE L1 3869 4175 -1971 298 175 0 0 chr9 14245985 14246048 -128025396 - L1MA7 LINE L1 -4 6287 6225 1743 195 74 18 chr9 14246311 14246746 -128024698 - MLT1C LTR MaLR 0 467 9 203 0 0 36 chr9 14246992 14247020 -128024424 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1832 110 28 62 chr9 14247028 14247318 -128024126 - AluSx SINE Alu -32 280 1 315 277 189 69 chr9 14247321 14247480 -128023964 + MER5B DNA MER1_type 1 178 0 360 252 64 120 chr9 14247914 14248148 -128023296 + L1MC/D LINE L1 5564 5784 -2024 239 226 17 17 chr9 14251052 14251167 -128020277 + (TA)n Simple_repeat Simple_repeat 1 115 0 333 0 0 0 chr9 14251207 14251244 -128020200 + (CA)n Simple_repeat Simple_repeat 2 38 0 192 313 106 39 chr9 14251327 14251506 -128019938 - MIR SINE MIR -55 207 17 22 0 0 0 chr9 14251911 14251933 -128019511 + AT_rich Low_complexity Low_complexity 1 22 0 30 59 0 0 chr9 14252426 14252477 -128018967 + AT_rich Low_complexity Low_complexity 1 51 0 22 35 0 0 chr9 14252510 14252539 -128018905 + AT_rich Low_complexity Low_complexity 1 29 0 213 232 34 147 chr9 14252688 14252865 -128018579 + L3 LINE CR1 1162 1318 -259 573 132 0 11 chr9 14252894 14252985 -128018459 + MLT2B2 LTR ERVL 1 90 -425 * 1152 245 4 4 chr9 14252971 14253212 -128018232 - MLT1A1 LTR MaLR -124 241 1 2501 50 3 0 chr9 14253551 14253851 -128017593 - AluY SINE Alu -7 304 4 733 267 194 22 chr9 14253857 14254448 -128016996 + L2 LINE L2 2519 3313 0 363 278 132 103 chr9 14254738 14255156 -128016288 + MLT1J LTR MaLR 33 462 -49 2291 101 3 0 chr9 14255198 14255504 -128015940 - AluSx SINE Alu -5 307 1 21 0 0 0 chr9 14255538 14255559 -128015885 + AT_rich Low_complexity Low_complexity 1 21 0 334 339 43 21 chr9 14255662 14255848 -128015596 - MIR SINE MIR -14 248 59 246 203 14 14 chr9 14256441 14256510 -128014934 - L1MCa LINE L1 -4353 2073 2005 1676 270 59 26 chr9 14257852 14258344 -128013100 - MLT1H LTR MaLR 0 549 42 565 250 9 0 chr9 14258353 14258469 -128012975 + MLT1H LTR MaLR 238 354 -195 1976 25 0 13 chr9 14258920 14259156 -128012288 - L1PA3 LINE L1 -523 5632 5400 4275 24 20 0 chr9 14259156 14259655 -128011789 + L1PA3 LINE L1 5641 6152 -3 29 28 0 0 chr9 14261306 14261342 -128010102 + AT_rich Low_complexity Low_complexity 1 36 0 427 319 17 21 chr9 14261944 14262185 -128009259 + MER112 DNA MER1_type 20 259 -1 23 0 0 0 chr9 14262366 14262389 -128009055 + AT_rich Low_complexity Low_complexity 1 23 0 297 289 87 13 chr9 14262405 14262564 -128008880 - MIR SINE MIR -63 145 14 290 222 79 0 chr9 14264049 14264112 -128007332 + L2 LINE L2 3203 3270 -2 582 149 11 0 chr9 14264865 14264952 -128006492 - AluJo SINE Alu -23 289 202 279 211 0 92 chr9 14264952 14265028 -128006416 - AluJo SINE Alu -148 154 86 22 35 0 0 chr9 14265094 14265123 -128006321 + AT_rich Low_complexity Low_complexity 1 29 0 259 282 10 58 chr9 14265347 14265450 -128005994 + MIR SINE MIR 97 194 -68 1626 297 74 5 chr9 14265474 14266169 -128005275 - L2 LINE L2 -8 3305 2547 2987 99 30 7 chr9 14266170 14266604 -128004840 - MLT2A1 LTR ERVL 0 444 1 1450 70 0 0 chr9 14266604 14266803 -128004641 - HERVL-A1 LTR ERVL 0 5654 5456 284 122 0 0 chr9 14266803 14266844 -128004600 - MLT2A1 LTR ERVL -403 41 1 1679 282 124 17 chr9 14266845 14267600 -128003844 - L2 LINE L2 -765 2549 1714 1232 242 105 44 chr9 14267613 14268089 -128003355 + MLT1H LTR MaLR 14 518 -31 470 258 96 39 chr9 14268148 14268377 -128003067 - L2 LINE L2 -1607 1707 1466 1792 148 13 17 chr9 14269002 14269300 -128002144 - AluSx SINE Alu -15 297 1 701 297 10 0 chr9 14270333 14270528 -128000916 + L1MCc LINE L1 280 476 -5947 900 283 30 17 chr9 14271004 14271304 -128000140 + L1MCc LINE L1 825 1128 -5295 490 223 16 8 chr9 14271301 14271422 -128000022 + L1ME1 LINE L1 4928 5049 -1097 * 2752 231 41 37 chr9 14271451 14272263 -127999181 + L1ME1 LINE L1 5349 6163 -3 25 51 0 0 chr9 14273546 14273585 -127997859 + AT_rich Low_complexity Low_complexity 1 39 0 23 0 0 0 chr9 14273868 14273891 -127997553 + AT_rich Low_complexity Low_complexity 1 23 0 465 274 75 44 chr9 14273995 14274408 -127997036 + L1ME4a LINE L1 5694 6119 -2 935 247 57 4 chr9 14274827 14275054 -127996390 - MIR SINE MIR -21 241 3 326 160 0 13 chr9 14275102 14275177 -127996267 + (TA)n Simple_repeat Simple_repeat 2 75 0 236 221 50 0 chr9 14275177 14275264 -127996180 + L1MC3 LINE L1 6572 6646 -1139 1983 136 7 3 chr9 14275264 14275565 -127995879 - AluSx SINE Alu -10 302 1 22 0 0 0 chr9 14275568 14275590 -127995854 + AT_rich Low_complexity Low_complexity 1 22 0 2139 118 3 0 chr9 14275597 14275894 -127995550 + AluSx SINE Alu 1 298 -14 2159 112 7 3 chr9 14276379 14276683 -127994761 - AluSx SINE Alu -3 309 5 1783 169 7 10 chr9 14277091 14277376 -127994068 + AluJb SINE Alu 1 285 -23 240 59 0 0 chr9 14277376 14277410 -127994034 + (CAAT)n Simple_repeat Simple_repeat 2 35 0 216 260 13 26 chr9 14279214 14279291 -127992153 + A-rich Low_complexity Low_complexity 3 78 0 299 200 15 0 chr9 14279761 14279826 -127991618 - MLT1E2 LTR MaLR -2 624 559 2021 66 0 8 chr9 14280265 14280523 -127990921 + AluY SINE Alu 53 308 -3 1994 219 92 43 chr9 14280749 14281311 -127990133 - MLT1G1 LTR MaLR 0 595 6 1618 170 12 49 chr9 14283594 14283918 -127987526 - AluJo SINE Alu 0 312 1 21 0 0 0 chr9 14285080 14285101 -127986343 + AT_rich Low_complexity Low_complexity 1 21 0 2240 109 0 0 chr9 14285176 14285478 -127985966 - AluSx SINE Alu 0 312 11 267 276 69 102 chr9 14286783 14287029 -127984415 - MLT1K LTR MaLR -168 420 183 328 298 97 32 chr9 14287137 14287261 -127984183 - L2 LINE L2 0 3272 3141 1089 163 36 5 chr9 14287448 14287644 -127983800 + MER6B DNA MER2_type 9 210 0 323 288 118 66 chr9 14287659 14287826 -127983618 - MIR SINE MIR -37 225 43 1754 184 38 70 chr9 14287826 14288272 -127983172 - MSTB1 LTR MaLR 0 432 1 323 288 118 66 chr9 14288272 14288316 -127983128 - MIR SINE MIR -219 43 3 1997 200 76 24 chr9 14288584 14289424 -127982020 - L1ME1 LINE L1 -313 5853 4972 1211 237 29 0 chr9 14289418 14289734 -127981710 + L1ME1 LINE L1 4651 4975 -1171 * 227 258 24 48 chr9 14290282 14290326 -127981118 - L1ME LINE L1 -536 5634 5590 1718 206 48 33 chr9 14290326 14290786 -127980658 - MLT1C LTR MaLR 0 467 1 227 258 24 48 chr9 14290786 14290865 -127980579 - L1ME LINE L1 -580 5590 5514 265 259 14 43 chr9 14290935 14291104 -127980340 - L1P LINE L1 -727 5424 5255 233 310 0 0 chr9 14291295 14291366 -127980078 + (CA)n Simple_repeat Simple_repeat 1 71 0 229 306 0 10 chr9 14291972 14292070 -127979374 - MLT1I LTR MaLR -8 401 305 324 273 53 8 chr9 14292193 14292325 -127979119 - MLT1J2 LTR MaLR -310 140 3 1280 193 146 71 chr9 14293458 14293925 -127977519 - MLT1D LTR MaLR -3 502 1 4638 181 14 11 chr9 14294931 14296046 -127975398 - L1MB1 LINE L1 0 6168 5049 1949 169 66 27 chr9 14296862 14296959 -127974485 + L1MA9 LINE L1 5684 5776 -536 276 30 0 0 chr9 14296959 14296992 -127974452 + (CA)n Simple_repeat Simple_repeat 2 34 0 1949 169 66 27 chr9 14296992 14297333 -127974111 + L1MA9 LINE L1 5776 6139 -173 974 164 6 6 chr9 14298902 14299085 -127972359 + L1MA9 LINE L1 6130 6312 0 2055 108 29 0 chr9 14300700 14300978 -127970466 - AluSx SINE Alu -26 286 1 199 355 82 0 chr9 14301390 14301500 -127969944 + L2 LINE L2 3149 3267 -5 706 222 17 0 chr9 14301668 14301844 -127969600 + L1 LINE L1 4472 4650 -1496 3698 125 24 13 chr9 14301845 14302459 -127968985 + L1PA16 LINE L1 5533 6153 -13 739 144 0 0 chr9 14302477 14302588 -127968856 + FLAM_C SINE Alu 1 111 -32 267 93 0 0 chr9 14302589 14302632 -127968812 + (GA)n Simple_repeat Simple_repeat 2 44 0 474 296 17 47 chr9 14302699 14302871 -127968573 - L2 LINE L2 0 3313 3147 651 279 98 41 chr9 14303268 14303584 -127967860 - L2 LINE L2 -171 3142 2809 28 29 0 0 chr9 14305262 14305297 -127966147 + AT_rich Low_complexity Low_complexity 1 35 0 30 0 0 0 chr9 14305527 14305557 -127965887 + AT_rich Low_complexity Low_complexity 1 30 0 316 329 95 30 chr9 14305563 14305794 -127965650 - L2 LINE L2 -43 3270 3025 325 198 25 12 chr9 14305936 14306017 -127965427 - MER103 DNA DNA -41 125 44 189 351 119 22 chr9 14306309 14306443 -127965001 - L2 LINE L2 -607 2707 2561 283 60 16 66 chr9 14306973 14307223 -127964221 + AluY SINE Alu 1 299 -1 293 231 0 0 chr9 14307484 14307549 -127963895 + MIR SINE MIR 59 123 -139 2141 123 0 3 chr9 14307549 14307858 -127963586 - AluSx SINE Alu -3 309 2 2135 110 0 3 chr9 14308871 14309161 -127962283 - AluSg SINE Alu -21 289 1 320 254 30 60 chr9 14309545 14309679 -127961765 + L2 LINE L2 3143 3272 0 197 242 0 48 chr9 14309722 14309784 -127961660 + MIR SINE MIR 191 249 -13 * 242 146 42 0 chr9 14309752 14309800 -127961644 + L2 LINE L2 3263 3312 -1 258 111 89 0 chr9 14310053 14310098 -127961346 + L2 LINE L2 3264 3312 -1 1082 159 10 20 chr9 14310915 14311110 -127960334 + AluJb SINE Alu 120 312 0 1666 247 62 14 chr9 14311219 14311782 -127959662 - L1ME2 LINE L1 -16 6148 5559 1549 203 49 49 chr9 14311787 14312240 -127959204 - MLT1C LTR MaLR -8 459 7 1196 233 62 68 chr9 14312245 14312616 -127958828 - L1ME2 LINE L1 -597 5567 5195 2065 129 6 10 chr9 14312616 14312927 -127958517 - AluSx SINE Alu 0 312 3 1196 233 62 68 chr9 14312927 14313563 -127957881 - L1ME2 LINE L1 -969 5195 4575 40601 35 22 1 chr9 14313825 14319851 -127951593 + L1PA2 LINE L1 1 6154 -1 31 26 0 0 chr9 14320018 14320056 -127951388 + AT_rich Low_complexity Low_complexity 1 38 0 914 182 17 6 chr9 14321282 14321458 -127949986 - MER45A DNA AcHobo 0 178 1 203 326 58 23 chr9 14322086 14322172 -127949272 - L2 LINE L2 -4 3309 3221 285 307 223 5 chr9 14322267 14322469 -127948975 - MIR SINE MIR -16 246 1 266 341 116 51 chr9 14322655 14323069 -127948375 - L2 LINE L2 -402 2912 2472 1931 167 0 3 chr9 14323207 14323518 -127947926 - AluJo SINE Alu -2 310 1 547 199 0 15 chr9 14324517 14324653 -127946791 + (CA)n Simple_repeat Simple_repeat 2 135 0 360 43 0 0 chr9 14327701 14327747 -127943697 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 293 271 41 16 chr9 14328484 14328606 -127942838 - LTR16B LTR ERVL -74 390 266 23 33 0 0 chr9 14329813 14329843 -127941601 + AT_rich Low_complexity Low_complexity 1 30 0 229 263 53 0 chr9 14330147 14330204 -127941240 - MIR SINE MIR -67 141 82 1544 215 26 26 chr9 14330227 14330608 -127940836 + MLT2D LTR ERVL 22 402 -12 417 86 0 0 chr9 14332214 14332272 -127939172 + (TG)n Simple_repeat Simple_repeat 2 59 0 1753 184 52 0 chr9 14332702 14333049 -127938395 - MLT1A1 LTR MaLR 0 365 1 1144 242 38 63 chr9 14333268 14333296 -127938148 + L1MC4 LINE L1 7549 7576 -466 2206 129 7 0 chr9 14333296 14333606 -127937838 + AluSx SINE Alu 1 312 0 1144 242 38 63 chr9 14333606 14334082 -127937362 + L1MC4 LINE L1 7576 8040 -2 200 149 0 90 chr9 14334305 14334372 -127937072 + (TAAAAA)n Simple_repeat Simple_repeat 3 63 0 282 304 10 20 chr9 14334389 14334491 -127936953 + MIR SINE MIR 53 153 -109 1913 112 0 45 chr9 14334973 14335260 -127936184 - AluSx SINE Alu -24 288 15 208 278 241 9 chr9 14335996 14336104 -127935340 - MIR3 SINE MIR -53 155 23 277 304 65 11 chr9 14336377 14336469 -127934975 - L2 LINE L2 -5 3267 3171 296 426 7 7 chr9 14338135 14338283 -127933161 + MIR3 SINE MIR 29 176 -32 1092 168 41 0 chr9 14338823 14339019 -127932425 + MER3 DNA MER1_type 6 209 0 349 120 0 0 chr9 14338976 14339026 -127932418 - MER3 DNA MER1_type -119 90 41 * 552 294 0 19 chr9 14339076 14339236 -127932208 - MER5B DNA MER1_type -21 157 1 333 345 108 14 chr9 14339543 14339691 -127931753 + L2 LINE L2 3107 3268 -4 318 253 11 11 chr9 14339812 14339899 -127931545 + (TG)n Simple_repeat Simple_repeat 1 87 0 341 293 61 0 chr9 14340892 14340991 -127930453 - MIR3 SINE MIR -9 199 95 333 211 45 15 chr9 14341444 14341577 -127929867 + L1M2 LINE L1 2682 2818 -4031 195 243 0 0 chr9 14341584 14341621 -127929823 - MIR SINE MIR -150 112 76 38 39 0 0 chr9 14342418 14342470 -127928974 + AT_rich Low_complexity Low_complexity 1 52 0 438 20 0 0 chr9 14342622 14342673 -127928771 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 261 0 0 0 chr9 14343075 14343104 -127928340 + (CA)n Simple_repeat Simple_repeat 2 30 0 29 47 0 0 chr9 14343249 14343292 -127928152 + AT_rich Low_complexity Low_complexity 1 43 0 3623 202 59 26 chr9 14343303 14343846 -127927598 + L1MC2 LINE L1 4812 5336 -1008 1733 181 3 16 chr9 14343846 14344149 -127927295 + AluJb SINE Alu 1 299 -13 3623 202 59 26 chr9 14344149 14344884 -127926560 + L1MC2 LINE L1 5336 6222 -122 2495 56 13 3 chr9 14344886 14345192 -127926252 + AluY SINE Alu 1 309 -2 21 0 0 0 chr9 14345327 14345348 -127926096 + AT_rich Low_complexity Low_complexity 1 21 0 28 29 0 0 chr9 14346092 14346127 -127925317 + AT_rich Low_complexity Low_complexity 1 35 0 793 284 132 84 chr9 14346619 14347284 -127924160 + L1MEc LINE L1 39 671 -5725 2277 102 0 3 chr9 14347284 14347579 -127923865 + AluSq SINE Alu 1 294 -19 793 284 132 84 chr9 14347579 14348309 -127923135 + L1MEc LINE L1 671 1501 -4895 693 95 11 0 chr9 14348356 14348451 -127922993 - MLT1B LTR MaLR 0 390 295 246 113 75 19 chr9 14348489 14348542 -127922902 - MLT2B1 LTR ERVL 0 520 465 1460 192 112 33 chr9 14348662 14349027 -127922417 - MLT2B1 LTR ERVL -126 394 1 1134 200 26 4 chr9 14349027 14349254 -127922190 - MLT1B LTR MaLR -158 232 1 563 256 73 18 chr9 14349254 14349473 -127921971 + L1MEc LINE L1 1541 1771 -4625 * 2114 291 62 9 chr9 14349467 14350161 -127921283 + L1ME1 LINE L1 25 755 -5641 1130 123 5 37 chr9 14350165 14350352 -127921092 + AluSg/x SINE Alu 117 297 -12 356 170 29 164 chr9 14350354 14350431 -127921013 + L1ME1 LINE L1 764 807 -5589 1556 182 10 40 chr9 14350431 14350727 -127920717 + AluJo SINE Alu 1 287 -25 356 170 29 164 chr9 14350727 14350820 -127920624 + L1ME1 LINE L1 807 911 -5485 1783 286 83 9 chr9 14350881 14351678 -127919766 + L1ME1 LINE L1 1248 2103 -4293 678 204 3 28 chr9 14351692 14351915 -127919529 + MLT1A1 LTR MaLR 1 363 -2 1817 241 39 30 chr9 14351916 14352689 -127918755 + L1ME1 LINE L1 2118 2854 -3361 7001 150 20 16 chr9 14352689 14352969 -127918475 - Tigger3b DNA MER2_type -1797 1231 954 3030 127 79 16 chr9 14352969 14353465 -127917979 - MER1A DNA MER1_type 0 527 1 7001 150 20 16 chr9 14353465 14354409 -127917035 - Tigger3b DNA MER2_type -2074 954 2 6175 224 81 59 chr9 14354410 14354812 -127916632 + L1ME1 LINE L1 2853 3244 -2991 2043 113 17 10 chr9 14354812 14355112 -127916332 + AluSc SINE Alu 1 302 -7 6175 224 81 59 chr9 14355112 14355599 -127915845 + L1ME1 LINE L1 3244 3719 -2516 1677 168 6 56 chr9 14355599 14355921 -127915523 + AluJo SINE Alu 1 306 -6 6175 224 81 59 chr9 14355921 14357869 -127913575 + L1ME1 LINE L1 3719 5789 -446 2599 31 0 0 chr9 14357869 14358163 -127913281 - AluY SINE Alu -17 294 1 6175 224 81 59 chr9 14358163 14358611 -127912833 + L1ME1 LINE L1 5789 6225 -10 319 313 22 30 chr9 14359136 14359270 -127912174 + MIR SINE MIR 15 147 -115 9026 125 32 32 chr9 14360442 14360917 -127910527 + Tigger1 DNA MER2_type 1 475 -1943 936 177 12 0 chr9 14360917 14361081 -127910363 + FAM SINE Alu 3 168 -7 9026 125 32 32 chr9 14361081 14362117 -127909327 + Tigger1 DNA MER2_type 475 1511 -907 1123 129 0 0 chr9 14362117 14362280 -127909164 - AluSg/x SINE Alu 0 312 150 5640 132 21 9 chr9 14362280 14363190 -127908254 + Tigger1 DNA MER2_type 1498 2418 0 195 42 0 0 chr9 14363750 14363774 -127907670 + (TTTC)n Simple_repeat Simple_repeat 2 25 0 2140 46 32 18 chr9 14363776 14364056 -127907388 - AluY SINE Alu -27 284 1 247 261 315 0 chr9 14366315 14366407 -127905037 + MIR3 SINE MIR 40 160 -48 210 250 70 60 chr9 14367295 14367395 -127904049 - MIR SINE MIR 0 262 162 * 232 390 71 18 chr9 14367381 14367550 -127903894 - L2 LINE L2 -225 3047 2870 2133 142 0 0 chr9 14368283 14368593 -127902851 + AluSx SINE Alu 1 310 -2 333 203 81 25 chr9 14368662 14368786 -127902658 - MER34C LTR ERV1 0 585 413 668 252 48 60 chr9 14368807 14369129 -127902315 - MER34 LTR ERV1 -184 523 1 205 260 0 0 chr9 14372752 14372802 -127898642 + CT-rich Low_complexity Low_complexity 1 50 0 36 53 0 0 chr9 14372982 14373039 -127898405 + AT_rich Low_complexity Low_complexity 1 57 0 312 286 143 19 chr9 14374817 14374978 -127896466 - MIR SINE MIR -70 192 12 3253 124 49 5 chr9 14375144 14375729 -127895715 + MER4B LTR ERV1 1 779 0 1345 143 27 82 chr9 14375819 14376113 -127895331 + AluJb SINE Alu 29 306 -6 892 255 52 15 chr9 14377491 14377817 -127893627 - MER113 DNA MER1_type? -178 343 6 211 241 76 25 chr9 14377946 14378025 -127893419 - MIR SINE MIR -8 254 172 2285 90 7 3 chr9 14379131 14379431 -127892013 - AluY SINE Alu -10 301 1 459 0 0 0 chr9 14379547 14379598 -127891846 + (TG)n Simple_repeat Simple_repeat 2 52 0 1497 140 93 50 chr9 14380046 14380324 -127891120 - AluSq SINE Alu -16 297 8 1166 248 129 7 chr9 14380351 14380754 -127890690 - MLT1C LTR MaLR -6 461 10 258 325 163 6 chr9 14381086 14381246 -127890198 - MIR3 SINE MIR 0 208 24 21 36 0 0 chr9 14382234 14382262 -127889182 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr9 14383750 14383774 -127887670 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr9 14384421 14384443 -127887001 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr9 14385027 14385048 -127886396 + AT_rich Low_complexity Low_complexity 1 21 0 889 170 144 5 chr9 14387054 14387248 -127884196 + MER58A DNA MER1_type 1 221 -3 434 254 66 57 chr9 14388362 14388590 -127882854 + MIR SINE MIR 20 249 -13 21 0 0 0 chr9 14390530 14390551 -127880893 + AT_rich Low_complexity Low_complexity 1 21 0 2040 117 4 4 chr9 14390561 14390882 -127880562 + AluSg SINE Alu 1 321 0 2274 62 3 24 chr9 14391624 14391915 -127879529 + AluY SINE Alu 20 304 -7 304 277 184 15 chr9 14392167 14392373 -127879071 + MIR SINE MIR 14 254 -8 1385 127 142 70 chr9 14392875 14393191 -127878253 - MER44D DNA MER2_type 0 609 1 2184 65 0 0 chr9 14393225 14393486 -127877958 + AluY SINE Alu 35 295 -16 2371 91 3 0 chr9 14393785 14394083 -127877361 - AluSp SINE Alu -12 301 3 1576 162 103 4 chr9 14395054 14395326 -127876118 - AluJb SINE Alu -13 299 1 211 282 42 42 chr9 14395875 14395946 -127875498 - MIR SINE MIR -172 90 20 384 324 39 103 chr9 14397126 14397456 -127873988 + L2 LINE L2 2945 3253 -19 2178 119 14 0 chr9 14398465 14398758 -127872686 - AluSx SINE Alu -15 297 1 22 35 0 0 chr9 14399386 14399415 -127872029 + AT_rich Low_complexity Low_complexity 1 29 0 320 208 52 26 chr9 14400700 14400777 -127870667 - MIR SINE MIR -92 170 92 317 321 109 7 chr9 14400859 14400996 -127870448 - MIR3 SINE MIR -39 169 19 206 378 0 12 chr9 14403766 14403848 -127867596 + MIR SINE MIR 61 141 -121 1427 219 104 9 chr9 14404079 14404568 -127866876 + MLT1F LTR MaLR 5 534 -8 471 336 76 53 chr9 14404570 14405005 -127866439 + MLT1K LTR MaLR 136 580 -8 2227 102 0 0 chr9 14405122 14405459 -127865985 + AluSx SINE Alu 1 312 0 612 146 184 0 chr9 14405689 14405792 -127865652 - FLAM_A SINE Alu -11 122 1 23 33 0 0 chr9 14406185 14406215 -127865229 + AT_rich Low_complexity Low_complexity 1 30 0 231 222 22 0 chr9 14406860 14406905 -127864539 + MIR SINE MIR 30 75 -133 295 252 99 36 chr9 14407294 14407405 -127864039 - MIR SINE MIR -41 221 104 838 173 78 6 chr9 14407640 14407819 -127863625 + LTR47A LTR ERVL 261 452 0 272 256 122 0 chr9 14408184 14408274 -127863170 - MIR SINE MIR -65 197 97 586 245 48 48 chr9 14408640 14408828 -127862616 - MIR SINE MIR -73 189 2 203 318 30 15 chr9 14408848 14408914 -127862530 - L2 LINE L2 -5 3267 3201 774 215 62 23 chr9 14409522 14409699 -127861745 - MER5A DNA MER1_type 0 189 6 217 178 56 22 chr9 14409930 14410020 -127861424 + (TTATA)n Simple_repeat Simple_repeat 4 96 0 243 301 0 27 chr9 14411182 14411255 -127860189 + L2 LINE L2 3238 3308 -5 2297 92 13 3 chr9 14412262 14412567 -127858877 - AluSc SINE Alu -1 308 1 29 28 0 0 chr9 14412840 14412876 -127858568 + AT_rich Low_complexity Low_complexity 1 36 0 314 165 82 57 chr9 14414721 14414841 -127856603 + MLT1F LTR MaLR 261 413 -175 283 127 175 0 chr9 14414863 14414926 -127856518 + MLT1F LTR MaLR 517 590 0 279 215 152 0 chr9 14415579 14415658 -127855786 - MIR SINE MIR -62 146 56 23 0 0 0 chr9 14416226 14416249 -127855195 + AT_rich Low_complexity Low_complexity 1 23 0 291 54 0 0 chr9 14416324 14416361 -127855083 + (TA)n Simple_repeat Simple_repeat 1 37 0 219 150 0 0 chr9 14416598 14416638 -127854806 + (TA)n Simple_repeat Simple_repeat 2 41 0 22 0 0 0 chr9 14416927 14416949 -127854495 + AT_rich Low_complexity Low_complexity 1 22 0 334 86 224 0 chr9 14417252 14417310 -127854134 + MADE1 DNA Mariner 10 80 0 246 333 106 72 chr9 14417312 14417492 -127853952 - MIR3 SINE MIR -3 205 20 24 77 0 0 chr9 14417673 14417725 -127853719 + AT_rich Low_complexity Low_complexity 1 52 0 198 0 0 0 chr9 14418340 14418362 -127853082 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 25 51 0 0 chr9 14420217 14420256 -127851188 + AT_rich Low_complexity Low_complexity 1 39 0 21 71 0 0 chr9 14422559 14422601 -127848843 + AT_rich Low_complexity Low_complexity 1 42 0 293 337 41 0 chr9 14425725 14425823 -127845621 + L2 LINE L2 3171 3272 0 201 250 0 0 chr9 14425922 14425962 -127845482 + (CA)n Simple_repeat Simple_repeat 1 40 0 242 100 0 0 chr9 14426608 14426648 -127844796 + L1PA3 LINE L1 6113 6152 -3 21 0 0 0 chr9 14426648 14426669 -127844775 + AT_rich Low_complexity Low_complexity 1 21 0 3798 191 73 12 chr9 14426912 14427343 -127844101 + L1MB3 LINE L1 5033 5436 -747 189 0 0 0 chr9 14427343 14427364 -127844080 + (CA)n Simple_repeat Simple_repeat 2 22 0 3798 191 73 12 chr9 14427364 14428022 -127843422 + L1MB3 LINE L1 5436 6175 -8 505 299 0 51 chr9 14428433 14428493 -127842951 + L2 LINE L2 2788 2849 -465 2434 111 28 17 chr9 14428493 14428853 -127842591 + THE1B LTR MaLR 1 364 0 505 299 0 51 chr9 14428853 14428989 -127842455 + L2 LINE L2 2849 2974 -340 758 149 5 155 chr9 14429637 14429831 -127841613 - FRAM SINE Alu -4 172 8 218 217 0 0 chr9 14430000 14430046 -127841398 + A-rich Low_complexity Low_complexity 1 46 0 609 273 24 18 chr9 14430123 14430288 -127841156 - MIR SINE MIR 0 262 97 639 218 77 101 chr9 14430604 14430852 -127840592 + MIR SINE MIR 21 262 0 213 189 0 0 chr9 14430857 14430894 -127840550 + (TGG)n Simple_repeat Simple_repeat 1 37 0 427 278 67 103 chr9 14431014 14431138 -127840306 + L1MC4a LINE L1 5440 5567 -2241 2174 115 0 3 chr9 14431138 14431425 -127840019 + AluSc SINE Alu 1 286 -23 427 278 67 103 chr9 14431425 14431807 -127839637 + L1MC4a LINE L1 5567 5928 -1880 456 241 161 12 chr9 14432317 14432479 -127838965 - MIR SINE MIR -25 237 52 2182 116 33 28 chr9 14432519 14432881 -127838563 - THE1B LTR MaLR 0 364 1 27 0 0 0 chr9 14433242 14433269 -127838175 + AT_rich Low_complexity Low_complexity 1 27 0 219 36 0 0 chr9 14433826 14433854 -127837590 + (CA)n Simple_repeat Simple_repeat 2 29 0 309 281 215 61 chr9 14435323 14435551 -127835893 - L3 LINE CR1 -22 1555 1293 228 405 0 0 chr9 14436271 14436350 -127835094 - MIR SINE MIR -182 80 2 213 274 129 0 chr9 14436428 14436490 -127834954 + MIR SINE MIR 45 114 -148 1887 139 49 9 chr9 14436904 14437032 -127834412 - MER2 DNA MER2_type -7 338 217 360 0 0 0 chr9 14437032 14437072 -127834372 + (TA)n Simple_repeat Simple_repeat 1 40 0 1887 139 49 9 chr9 14437072 14437267 -127834177 - MER2 DNA MER2_type -128 217 2 2169 111 0 10 chr9 14437491 14437788 -127833656 + AluSq SINE Alu 3 296 -17 1787 184 3 3 chr9 14438188 14438487 -127832957 + AluJb SINE Alu 6 304 -8 36 23 0 0 chr9 14438662 14438705 -127832739 + AT_rich Low_complexity Low_complexity 1 43 0 308 281 0 0 chr9 14439647 14439711 -127831733 - L2 LINE L2 0 3272 3209 242 65 65 22 chr9 14443890 14443936 -127827508 - MARNA DNA Mariner -342 244 197 23 101 0 0 chr9 14444786 14444865 -127826579 + AT_rich Low_complexity Low_complexity 1 79 0 279 351 81 9 chr9 14445202 14445313 -127826131 - L2 LINE L2 0 3313 3195 971 349 37 44 chr9 14445415 14446117 -127825327 + L2 LINE L2 2261 2957 -357 22 35 0 0 chr9 14446210 14446239 -127825205 + AT_rich Low_complexity Low_complexity 1 29 0 424 301 75 20 chr9 14447213 14447412 -127824032 + MIR SINE MIR 48 257 -5 202 385 55 9 chr9 14447608 14447717 -127823727 + MIR SINE MIR 36 149 -113 2337 84 0 13 chr9 14448578 14448888 -127822556 - AluSq SINE Alu -7 306 1 2305 156 58 2 chr9 14449072 14449503 -127821941 + L1MB3 LINE L1 5727 6181 -2 326 231 22 0 chr9 14449504 14449595 -127821849 + L1M4 LINE L1 3849 3941 -2205 1939 127 7 10 chr9 14449622 14449922 -127821522 + AluSq SINE Alu 1 299 -14 216 234 0 0 chr9 14450016 14450063 -127821381 + L2 LINE L2 2689 2735 -579 366 216 142 27 chr9 14450651 14450799 -127820645 - MER103 DNA DNA -1 165 1 255 233 14 27 chr9 14453633 14453706 -127817738 + (CATATA)n Simple_repeat Simple_repeat 4 75 0 532 290 126 13 chr9 14453846 14454077 -127817367 + MIR SINE MIR 3 259 -3 708 79 89 0 chr9 14454189 14454290 -127817154 - AluY SINE Alu -186 125 16 1402 85 0 11 chr9 14454290 14454479 -127816965 + AluY SINE Alu 114 300 -11 556 254 130 14 chr9 14454925 14455295 -127816149 - L1M4 LINE L1 -881 5265 4853 28 29 0 0 chr9 14457580 14457615 -127813829 + AT_rich Low_complexity Low_complexity 1 35 0 457 234 49 6 chr9 14458758 14458938 -127812506 + L1M4 LINE L1 5272 5458 -712 233 393 51 8 chr9 14460972 14461089 -127810355 - MIR3 SINE MIR -28 180 59 26 0 0 0 chr9 14461935 14461961 -127809483 + AT_rich Low_complexity Low_complexity 1 26 0 223 212 35 35 chr9 14462613 14462698 -127808746 + GA-rich Low_complexity Low_complexity 1 85 0 26 50 0 0 chr9 14462869 14462909 -127808535 + AT_rich Low_complexity Low_complexity 1 40 0 1840 123 14 14 chr9 14464438 14464715 -127806729 + AluSx SINE Alu 1 277 -35 234 0 0 0 chr9 14464715 14464741 -127806703 + (CAAT)n Simple_repeat Simple_repeat 3 28 0 263 211 19 0 chr9 14467096 14467148 -127804296 + MIR SINE MIR 156 208 -54 293 271 12 35 chr9 14467930 14468015 -127803429 + MIR SINE MIR 111 193 -69 550 279 78 11 chr9 14468043 14468222 -127803222 - MIR SINE MIR -57 205 15 26 0 0 0 chr9 14468561 14468587 -127802857 + AT_rich Low_complexity Low_complexity 1 26 0 320 278 108 41 chr9 14468837 14469031 -127802413 + L1MC4a LINE L1 5866 6072 -1736 23 33 0 0 chr9 14469095 14469125 -127802319 + AT_rich Low_complexity Low_complexity 1 30 0 265 277 9 60 chr9 14470023 14470129 -127801315 - MIR3 SINE MIR -4 204 104 3052 55 15 7 chr9 14470525 14470928 -127800516 + L1PA8 LINE L1 5764 6169 -3 1796 160 0 0 chr9 14471208 14471513 -127799931 + AluJb SINE Alu 1 305 0 224 167 222 14 chr9 14471525 14471597 -127799847 + MIR SINE MIR 174 260 -2 22 0 0 0 chr9 14473362 14473384 -127798060 + AT_rich Low_complexity Low_complexity 1 22 0 293 176 0 0 chr9 14473443 14473494 -127797950 + L1MA5 LINE L1 6024 6074 -226 186 43 0 0 chr9 14473494 14473517 -127797927 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 400 231 135 0 chr9 14473522 14473626 -127797818 - FLAM_A SINE Alu -15 118 1 6110 139 36 10 chr9 14473678 14474932 -127796512 - L1MA4 LINE L1 -7 6497 5202 423 0 0 0 chr9 14474940 14474987 -127796457 + (TG)n Simple_repeat Simple_repeat 2 48 0 8414 220 43 67 chr9 14474999 14477536 -127793908 - L1MA4 LINE L1 -1396 4954 2478 1754 269 17 52 chr9 14477554 14478379 -127793065 - L1MA4 LINE L1 -4466 1885 1094 537 364 47 32 chr9 14478728 14479222 -127792222 - L1MA4 LINE L1 -5780 501 1 1197 96 0 30 chr9 14479225 14479422 -127792022 + L1MA5 LINE L1 6108 6298 -2 414 0 0 0 chr9 14479979 14480025 -127791419 + (CA)n Simple_repeat Simple_repeat 1 46 0 192 77 0 0 chr9 14480025 14480051 -127791393 + (GA)n Simple_repeat Simple_repeat 1 26 0 815 159 8 0 chr9 14480556 14480682 -127790762 + AluSq/x SINE Alu 1 127 -186 23 33 0 0 chr9 14480903 14480933 -127790511 + AT_rich Low_complexity Low_complexity 1 30 0 222 234 33 174 chr9 14482527 14482638 -127788806 + MER5B DNA MER1_type 18 94 -84 248 290 21 65 chr9 14482530 14482623 -127788821 - MER5A DNA MER1_type -22 167 79 1445 203 17 30 chr9 14482638 14482805 -127788639 - AluJo SINE Alu -11 301 138 2263 77 31 0 chr9 14482805 14483092 -127788352 - AluSc SINE Alu -13 296 1 1445 203 17 30 chr9 14483092 14483225 -127788219 - AluJo SINE Alu -174 138 5 222 234 33 174 chr9 14483225 14483297 -127788147 + MER5B DNA MER1_type 94 175 -3 259 344 59 29 chr9 14483490 14483763 -127787681 + L2 LINE L2 2691 2971 -343 1776 169 0 25 chr9 14484411 14484725 -127786719 + AluJb SINE Alu 1 306 -6 185 224 19 19 chr9 14484832 14484939 -127786505 + (TA)n Simple_repeat Simple_repeat 2 108 0 326 301 62 70 chr9 14486008 14486425 -127785019 + L1M3c LINE L1 1195 1529 -1042 582 154 137 0 chr9 14488941 14489058 -127782386 + FLAM_C SINE Alu 1 133 0 3322 160 7 3 chr9 14490275 14490845 -127780599 + L1MB8 LINE L1 5598 6169 -9 2005 143 55 18 chr9 14491213 14491598 -127779846 - L1MB2 LINE L1 -1 6170 5772 237 233 0 0 chr9 14491598 14491688 -127779756 + (TA)n Simple_repeat Simple_repeat 2 91 0 483 172 86 0 chr9 14491692 14491785 -127779659 - L1MB2 LINE L1 -390 5793 5693 239 173 39 19 chr9 14491952 14492004 -127779440 + MER103 DNA DNA 17 69 -97 1065 177 5 30 chr9 14492006 14492204 -127779240 - AluJo SINE Alu 0 312 120 206 32 32 0 chr9 14493596 14493627 -127777817 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 221 250 79 0 chr9 14494015 14494091 -127777353 - MIR SINE MIR -6 256 175 598 197 153 33 chr9 14496633 14496816 -127774628 + MER3 DNA MER1_type 5 209 0 23 33 0 0 chr9 14497890 14497920 -127773524 + AT_rich Low_complexity Low_complexity 1 30 0 294 200 0 50 chr9 14499069 14499129 -127772315 - MER2 DNA MER2_type 0 345 289 1196 170 24 15 chr9 14499310 14499516 -127771928 - MER2 DNA MER2_type -136 209 2 1737 168 7 10 chr9 14500061 14500353 -127771091 + AluJo SINE Alu 1 291 -21 344 289 7 47 chr9 14500988 14501137 -127770307 + L1ME LINE L1 5599 5741 -380 857 117 64 18 chr9 14501451 14501622 -127769822 + Tigger3(Golem) DNA MER2_type 2434 2612 -417 2246 136 53 5 chr9 14501734 14502110 -127769334 + Tigger3(Golem) DNA MER2_type 2595 2988 -41 692 250 96 17 chr9 14502109 14502349 -127769095 + MER77 LTR ERV1 342 600 -5 * 226 204 20 122 chr9 14502417 14502515 -127768929 + MER21A LTR ERV1 680 767 -164 577 311 152 35 chr9 14502734 14503161 -127768283 + L2 LINE L2 2828 3304 -9 348 285 65 8 chr9 14505548 14505671 -127765773 - MLT1E LTR MaLR -457 136 7 312 293 58 16 chr9 14505674 14505865 -127765579 + L1M2 LINE L1 2285 2483 -4366 284 48 24 0 chr9 14505875 14505917 -127765527 + (CA)n Simple_repeat Simple_repeat 1 43 0 232 310 32 25 chr9 14506095 14506253 -127765191 + L1ME1 LINE L1 1892 2050 -4346 * 2386 247 90 15 chr9 14506248 14507023 -127764421 + L1ME1 LINE L1 5305 6144 -91 963 264 214 48 chr9 14507086 14507595 -127763849 + L1ME3 LINE L1 2982 3405 -2810 1781 151 40 4 chr9 14507595 14507873 -127763571 + AluSx SINE Alu 1 288 -24 963 264 214 48 chr9 14507873 14508611 -127762833 + L1ME3 LINE L1 3405 4436 -1779 1948 264 62 39 chr9 14508654 14509931 -127761513 + L1ME3 LINE L1 4873 6184 -47 24 53 0 0 chr9 14510342 14510380 -127761064 + AT_rich Low_complexity Low_complexity 1 38 0 281 278 122 0 chr9 14511683 14511773 -127759671 - L2 LINE L2 -1 3312 3212 480 117 0 0 chr9 14512485 14512562 -127758882 + (TG)n Simple_repeat Simple_repeat 2 78 0 2360 80 6 16 chr9 14512579 14512892 -127758552 - AluSp SINE Alu -3 310 1 3718 200 109 29 chr9 14513382 14513472 -127757972 + Charlie1 DNA MER1_type 1584 1665 -1096 1809 132 20 16 chr9 14513472 14513775 -127757669 + AluJb SINE Alu 1 304 -8 3718 200 109 29 chr9 14513775 14514327 -127757117 + Charlie1 DNA MER1_type 1665 2171 -590 2949 162 32 50 chr9 14514327 14514950 -127756494 + LTR9 LTR ERV1 1 612 0 3718 200 109 29 chr9 14514950 14515386 -127756058 + Charlie1 DNA MER1_type 2171 2750 -11 523 235 38 8 chr9 14515657 14515789 -127755655 + MIR SINE MIR 102 237 -25 207 0 0 0 chr9 14516892 14516915 -127754529 + (A)n Simple_repeat Simple_repeat 1 23 0 241 337 92 31 chr9 14516915 14517078 -127754366 + MIR SINE MIR 20 192 -70 1854 115 0 11 chr9 14518527 14518796 -127752648 - AluSx SINE Alu -2 310 45 878 238 9 48 chr9 14519081 14519308 -127752136 - MER20 DNA MER1_type 0 219 2 31 0 0 0 chr9 14521431 14521462 -127749982 + AT_rich Low_complexity Low_complexity 1 31 0 21 82 0 0 chr9 14521520 14521569 -127749875 + AT_rich Low_complexity Low_complexity 1 49 0 247 270 270 9 chr9 14521765 14521876 -127749568 + MIR3 SINE MIR 42 181 -27 2040 128 20 0 chr9 14522478 14522775 -127748669 + AluSx SINE Alu 2 304 -8 2328 87 0 3 chr9 14524256 14524556 -127746888 + AluSx SINE Alu 1 299 -13 2103 126 0 28 chr9 14525001 14525318 -127746126 + AluSx SINE Alu 5 312 0 306 0 0 0 chr9 14525416 14525450 -127745994 + (CA)n Simple_repeat Simple_repeat 1 34 0 190 207 17 52 chr9 14527072 14527130 -127744314 - L2 LINE L2 -81 3232 3177 2138 135 0 0 chr9 14527158 14527469 -127743975 + AluSx SINE Alu 1 311 -1 184 291 51 13 chr9 14528200 14528279 -127743165 + MIR SINE MIR 48 129 -133 2263 83 0 13 chr9 14528597 14528897 -127742547 + AluSc SINE Alu 1 296 -13 1091 126 126 6 chr9 14528900 14529082 -127742362 + AluSx SINE Alu 1 204 -108 280 296 233 0 chr9 14529159 14529311 -127742133 + MIR SINE MIR 19 203 -59 698 255 142 9 chr9 14530154 14530366 -127741078 - MIR SINE MIR -21 241 2 1026 118 14 91 chr9 14530771 14530901 -127740543 + Tigger7 DNA MER2_type 2288 2396 -95 14144 140 29 6 chr9 14530901 14533265 -127738179 - Tigger1 DNA MER2_type 0 2418 1 1026 118 14 91 chr9 14533265 14533355 -127738089 + Tigger7 DNA MER2_type 2396 2491 0 344 297 31 23 chr9 14533628 14533756 -127737688 - MIR SINE MIR -120 142 14 802 119 108 34 chr9 14534053 14534229 -127737215 + MER53 DNA DNA 1 189 0 441 81 0 0 chr9 14535271 14535333 -127736111 + AluSc SINE Alu 156 217 -92 267 170 0 19 chr9 14535354 14535407 -127736037 + MER53 DNA DNA 138 189 0 324 65 0 0 chr9 14535539 14535585 -127735859 - AluSc SINE Alu -80 219 174 408 149 11 11 chr9 14535585 14535672 -127735772 + AluS SINE Alu 220 306 -3 234 343 87 48 chr9 14535856 14536144 -127735300 - L2 LINE L2 -183 3089 2743 2047 120 3 26 chr9 14536144 14536452 -127734992 - AluSx SINE Alu -11 301 1 234 343 87 48 chr9 14536452 14536603 -127734841 - L2 LINE L2 -529 2743 2599 1007 228 65 54 chr9 14536830 14537216 -127734228 + MLT1B LTR MaLR 1 390 0 1501 177 3 57 chr9 14538071 14538388 -127733056 + AluJo SINE Alu 11 310 -2 1559 159 55 14 chr9 14538492 14538781 -127732663 + AluJo SINE Alu 1 301 -11 418 280 58 40 chr9 14538876 14539101 -127732343 + L1MDa LINE L1 2351 2579 -3961 30 0 0 0 chr9 14539150 14539180 -127732264 + AT_rich Low_complexity Low_complexity 1 30 0 607 237 65 38 chr9 14539402 14539588 -127731856 + L1MC5 LINE L1 7727 7917 -44 198 307 243 21 chr9 14540728 14540868 -127730576 - MIR3 SINE MIR -17 191 21 24 0 0 0 chr9 14540961 14540985 -127730459 + AT_rich Low_complexity Low_complexity 1 24 0 2010 124 3 0 chr9 14541612 14541903 -127729541 + AluSp SINE Alu 14 305 -8 297 292 124 7 chr9 14543628 14543765 -127727679 - MIR SINE MIR -48 214 62 23 0 0 0 chr9 14544459 14544482 -127726962 + AT_rich Low_complexity Low_complexity 1 23 0 351 172 103 9 chr9 14544660 14544776 -127726668 + MER69 DNA AcHobo 2400 2526 0 196 185 11 174 chr9 14545653 14545745 -127725699 + L2 LINE L2 3194 3270 -43 951 207 43 55 chr9 14546741 14547069 -127724375 + MER33 DNA MER1_type 1 324 0 21 36 0 0 chr9 14547431 14547459 -127723985 + AT_rich Low_complexity Low_complexity 1 28 0 416 209 49 80 chr9 14547628 14547791 -127723653 + MER34 LTR ERV1 3 160 -382 237 200 88 25 chr9 14547937 14548017 -127723427 + MER34 LTR ERV1 458 542 0 1225 208 47 29 chr9 14548090 14548470 -127722974 + L1ME1 LINE L1 5776 6162 -4 864 130 0 36 chr9 14548887 14549025 -127722419 + AluSq/x SINE Alu 1 133 -179 1986 155 42 11 chr9 14549201 14549555 -127721889 + MLT1A1 LTR MaLR 1 365 0 798 130 62 0 chr9 14549928 14550090 -127721354 - Charlie5 DNA MER1_type 0 2624 2453 21 82 0 0 chr9 14550489 14550538 -127720906 + AT_rich Low_complexity Low_complexity 1 49 0 24 0 0 0 chr9 14550830 14550854 -127720590 + AT_rich Low_complexity Low_complexity 1 24 0 21 57 0 0 chr9 14550923 14550958 -127720486 + AT_rich Low_complexity Low_complexity 1 35 0 1909 148 89 3 chr9 14551484 14551843 -127719601 + MLT1B LTR MaLR 1 390 0 813 140 7 0 chr9 14551843 14551979 -127719465 + MLT1B-int LTR MaLR 1 137 -1234 205 306 0 20 chr9 14553559 14553657 -127717787 + GA-rich Low_complexity Low_complexity 2 97 0 2130 110 0 0 chr9 14553857 14554175 -127717269 - AluSx SINE Alu 0 312 1 246 62 0 0 chr9 14555873 14555905 -127715539 + (CCCCCA)n Simple_repeat Simple_repeat 1 32 0 29 28 0 0 chr9 14555935 14555971 -127715473 + GC_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr9 14556323 14556345 -127715099 + GC_rich Low_complexity Low_complexity 1 22 0 893 153 16 26 chr9 14556440 14556629 -127714815 - MER53 DNA DNA -1 188 2 420 217 114 39 chr9 14557231 14557411 -127714033 - MER69 DNA AcHobo -19 2507 1 300 308 220 23 chr9 14557417 14557722 -127713722 + L2 LINE L2 2061 2425 -889 296 340 99 21 chr9 14557807 14557948 -127713496 + L2 LINE L2 3096 3247 -25 475 328 0 16 chr9 14560210 14560399 -127711045 + MLT1L LTR MaLR 426 611 -4 235 312 46 0 chr9 14560737 14560846 -127710598 - HAL1 LINE L1 -1641 866 753 256 254 0 14 chr9 14560992 14561063 -127710381 + (TG)n Simple_repeat Simple_repeat 1 70 0 388 165 165 0 chr9 14561222 14561325 -127710119 - MER5C DNA MER1_type 0 324 205 394 212 221 0 chr9 14561459 14561572 -127709872 + MER5A DNA MER1_type 41 178 -11 755 303 77 15 chr9 14561618 14561945 -127709499 + L2 LINE L2 2944 3290 -23 605 227 13 7 chr9 14562402 14562552 -127708892 - L1ME2 LINE L1 -14 6150 6000 913 164 57 53 chr9 14562554 14562798 -127708646 - MER96B DNA MER1_type? -170 247 3 780 256 48 37 chr9 14562814 14563083 -127708361 - MLT1G LTR MaLR -294 296 25 417 346 32 5 chr9 14564455 14564643 -127706801 - LTR16A LTR ERVL -52 398 206 1999 217 113 21 chr9 14564817 14565481 -127705963 + MER50 LTR ERV1 10 734 0 407 317 136 5 chr9 14565996 14566195 -127705249 + MIR SINE MIR 19 243 -19 207 204 0 0 chr9 14566208 14566257 -127705187 + (ATG)n Simple_repeat Simple_repeat 3 51 0 1504 179 0 75 chr9 14566283 14566591 -127704853 - AluJb SINE Alu -27 285 1 271 371 9 0 chr9 14566831 14566936 -127704508 - MIR SINE MIR -139 123 18 201 219 24 0 chr9 14567035 14567076 -127704368 - MER5B DNA MER1_type -136 42 1 21 36 0 0 chr9 14567114 14567142 -127704302 + AT_rich Low_complexity Low_complexity 1 28 0 565 216 0 0 chr9 14567262 14567373 -127704071 + FLAM_A SINE Alu 24 134 -8 440 376 78 9 chr9 14567472 14567690 -127703754 - L1MC4 LINE L1 -17 8025 7793 2303 77 0 35 chr9 14567723 14568036 -127703408 + AluY SINE Alu 1 302 -9 252 146 0 0 chr9 14568041 14568082 -127703362 - AluJ/FLAM SINE Alu -218 84 44 1072 259 52 118 chr9 14568175 14569041 -127702403 - L1MC4 LINE L1 -370 7672 6876 1761 184 16 3 chr9 14569041 14569346 -127702098 - AluJb SINE Alu -3 309 1 1072 259 52 118 chr9 14569346 14569456 -127701988 - L1MC4 LINE L1 -1166 6876 6760 749 334 71 56 chr9 14569950 14570804 -127700640 + L1MEc LINE L1 894 1823 -753 2072 136 0 13 chr9 14571017 14571319 -127700125 + AluSx SINE Alu 9 306 -6 1047 167 46 0 chr9 14571345 14571519 -127699925 + FRAM SINE Alu 1 176 0 317 270 26 37 chr9 14571558 14571747 -127699697 + L1MEc LINE L1 2387 2573 -3642 24 0 0 0 chr9 14571882 14571906 -127699538 + AT_rich Low_complexity Low_complexity 1 24 0 1323 275 102 8 chr9 14572161 14572634 -127698810 - MLT1H LTR MaLR -27 522 6 2523 66 0 0 chr9 14572659 14572960 -127698484 + AluY SINE Alu 1 301 -10 345 243 200 22 chr9 14572967 14573152 -127698292 + L1MEc LINE L1 3033 3250 -2965 383 271 69 24 chr9 14573182 14573473 -127697971 + L1MEc LINE L1 3247 3550 -2665 2088 175 44 14 chr9 14573683 14574118 -127697326 - LOR1b LTR ERV1 -13 448 1 462 297 53 29 chr9 14574169 14574623 -127696821 + L1MEc LINE L1 3828 4292 -1923 629 240 11 66 chr9 14574649 14574936 -127696508 - LTR37B LTR ERV1 0 468 198 446 250 42 7 chr9 14575053 14575197 -127696247 - LTR37B LTR ERV1 -314 154 6 334 217 62 155 chr9 14575205 14575347 -127696097 + L1MEc LINE L1 4320 4429 -1786 1543 184 16 48 chr9 14575347 14575657 -127695787 + AluJo SINE Alu 1 300 -12 334 217 62 155 chr9 14575657 14575772 -127695672 + L1MEc LINE L1 4429 4553 -1662 1496 202 22 0 chr9 14576195 14576472 -127694972 - AluJo SINE Alu -28 284 2 541 182 56 56 chr9 14576523 14576666 -127694778 + FLAM_C SINE Alu 1 143 0 206 303 45 0 chr9 14576718 14576784 -127694660 - MIR SINE MIR 0 262 194 2177 121 0 7 chr9 14577089 14577387 -127694057 + AluSx SINE Alu 3 298 -14 32743 39 4 10 chr9 14578100 14583209 -127688235 - L1PA4 LINE L1 0 6155 1081 559 102 0 0 chr9 14583177 14583289 -127688155 - L1P3 LINE L1 -6066 395 10 * 2229 85 7 3 chr9 14583422 14583715 -127687729 - AluY SINE Alu -17 294 1 443 320 164 3 chr9 14583778 14584090 -127687354 + LTR33A LTR ERVL 142 503 -20 249 283 232 0 chr9 14584206 14584305 -127687139 - L2 LINE L2 0 3313 3192 558 229 0 0 chr9 14584313 14584422 -127687022 + MER81 DNA DNA 1 109 -5 417 292 64 58 chr9 14584465 14584636 -127686808 - L2 LINE L2 -164 3149 2978 489 145 0 0 chr9 14584733 14584802 -127686642 - AluS SINE Alu -239 70 2 1425 114 0 30 chr9 14584805 14585007 -127686437 + AluSc SINE Alu 96 291 -18 351 263 73 15 chr9 14585051 14585188 -127686256 - LTR33 LTR ERVL -135 386 242 1847 152 158 13 chr9 14585396 14585770 -127685674 - MSTA LTR MaLR 0 428 1 184 333 81 0 chr9 14586123 14586222 -127685222 - MIR SINE MIR -75 187 81 483 210 5 15 chr9 14586603 14586808 -127684636 + CT-rich Low_complexity Low_complexity 1 203 0 2172 110 0 0 chr9 14586808 14587089 -127684355 - AluSq SINE Alu -32 281 1 2099 149 0 0 chr9 14587990 14588285 -127683159 - AluSx SINE Alu -13 299 5 24 0 0 0 chr9 14588730 14588754 -127682690 + AT_rich Low_complexity Low_complexity 1 24 0 269 200 86 14 chr9 14588818 14588888 -127682556 + MLT1L LTR MaLR 35 109 -506 1285 231 86 5 chr9 14588921 14589306 -127682138 + LTR40c LTR ERVL 44 459 -6 431 234 52 120 chr9 14589333 14589641 -127681803 + MLT1J LTR MaLR 124 410 -101 1674 184 3 20 chr9 14589704 14590008 -127681436 - AluJo SINE Alu -13 299 1 1222 211 0 0 chr9 14590067 14590275 -127681169 - AluJb SINE Alu -22 290 83 1797 180 7 10 chr9 14590324 14590624 -127680820 - AluJo SINE Alu -13 299 1 326 258 43 0 chr9 14591814 14591907 -127679537 - MLT1G1 LTR MaLR -498 97 1 2366 99 7 0 chr9 14592593 14592896 -127678548 + AluSg SINE Alu 1 305 -5 393 282 92 45 chr9 14593001 14593246 -127678198 + HAL1 LINE L1 3 317 -2190 324 0 0 0 chr9 14593280 14593316 -127678128 + (TG)n Simple_repeat Simple_repeat 2 37 0 1062 84 35 0 chr9 14593320 14593462 -127677982 - AluSg/x SINE Alu -25 287 141 341 120 0 0 chr9 14593462 14593512 -127677932 - Alu SINE Alu -250 50 1 507 302 83 36 chr9 14593516 14593768 -127677676 + HAL1 LINE L1 349 612 -1895 1560 268 40 21 chr9 14593967 14594389 -127677055 - LTR16A LTR ERVL -2 448 19 250 225 155 14 chr9 14594391 14594462 -127676982 + HAL1 LINE L1 738 818 -1689 650 305 24 20 chr9 14594503 14594720 -127676724 - MLT1I LTR MaLR -121 288 91 340 301 58 46 chr9 14594745 14594918 -127676526 - MLT1H1 LTR MaLR -29 526 352 1483 273 110 5 chr9 14594966 14595595 -127675849 + HAL1 LINE L1 1116 1810 -697 454 224 97 90 chr9 14595726 14595967 -127675477 + HAL1 LINE L1 2104 2349 -158 2673 94 11 0 chr9 14595967 14596327 -127675117 - THE1B LTR MaLR 0 364 1 454 224 97 90 chr9 14596327 14596353 -127675091 + HAL1 LINE L1 2349 2373 -134 337 200 0 0 chr9 14596354 14596419 -127675025 + MLT1K LTR MaLR 488 552 -36 182 206 0 132 chr9 14596514 14596582 -127674862 - MER5A DNA MER1_type -114 75 17 * 203 330 0 0 chr9 14596521 14596583 -127674861 + MER5A DNA MER1_type 116 188 -1 2103 254 35 15 chr9 14597251 14597794 -127673650 - MLT1H1 LTR MaLR -1 554 1 1301 195 55 12 chr9 14597895 14598152 -127673292 + AluJb SINE Alu 9 276 -36 21 36 0 0 chr9 14600244 14600272 -127671172 + AT_rich Low_complexity Low_complexity 1 28 0 238 167 17 17 chr9 14600915 14600975 -127670469 + (TA)n Simple_repeat Simple_repeat 1 60 0 384 273 230 25 chr9 14601143 14601166 -127670278 + MIR SINE MIR 4 21 -241 1384 208 67 18 chr9 14601166 14601493 -127669951 - MER2 DNA MER2_type 0 344 2 384 273 230 25 chr9 14601493 14601630 -127669814 + MIR SINE MIR 21 197 -65 500 282 141 46 chr9 14601636 14601877 -127669567 - LTR41 LTR ERVL -170 603 340 662 0 13 0 chr9 14601887 14601965 -127669479 + (TATTG)n Simple_repeat Simple_repeat 3 81 0 918 190 40 0 chr9 14601976 14602150 -127669294 - LTR41 LTR ERVL -590 183 3 290 222 0 0 chr9 14602157 14602211 -127669233 + MIR SINE MIR 203 256 -6 456 287 127 74 chr9 14602263 14602507 -127668937 - L1ME4a LINE L1 -210 5911 5681 783 157 0 0 chr9 14602507 14602628 -127668816 - FLAM_C SINE Alu -12 121 1 456 287 127 74 chr9 14602628 14602909 -127668535 - L1ME4a LINE L1 -440 5681 5358 8843 183 29 22 chr9 14603257 14603842 -127667602 + L1 LINE L1 2710 3289 -2857 1717 164 11 7 chr9 14603842 14604122 -127667322 + AluJb SINE Alu 1 281 -31 8843 183 29 22 chr9 14604122 14605462 -127665982 + L1 LINE L1 3289 4649 -1497 1143 163 15 0 chr9 14605463 14605665 -127665779 - L1 LINE L1 -1268 4878 4674 319 203 85 0 chr9 14605665 14605783 -127665661 - L1ME4a LINE L1 -19 6102 5975 21 36 0 0 chr9 14605875 14605903 -127665541 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr9 14605973 14606003 -127665441 + AT_rich Low_complexity Low_complexity 1 30 0 2119 138 0 0 chr9 14606007 14606298 -127665146 - AluSx SINE Alu -21 291 1 545 311 42 0 chr9 14606345 14606538 -127664906 - L1ME LINE L1 -436 5685 5485 413 310 59 31 chr9 14606699 14606954 -127664490 - L1 LINE L1 -1499 4647 4386 212 261 171 57 chr9 14607044 14607132 -127664312 + MIR SINE MIR 1 98 -164 964 240 257 7 chr9 14607140 14607552 -127663892 + LTR33 LTR ERVL 3 517 -4 1895 136 13 19 chr9 14608693 14609002 -127662442 + AluSx SINE Alu 1 307 -5 477 135 0 0 chr9 14609854 14609943 -127661501 + L1MA4A LINE L1 6207 6295 -8 1618 192 28 0 chr9 14610133 14610420 -127661024 + AluJo SINE Alu 1 295 -17 23 33 0 0 chr9 14610561 14610591 -127660853 + AT_rich Low_complexity Low_complexity 1 30 0 2346 84 0 3 chr9 14611384 14611680 -127659764 - AluY SINE Alu -16 295 1 27 0 0 0 chr9 14611684 14611711 -127659733 + AT_rich Low_complexity Low_complexity 1 27 0 683 249 110 74 chr9 14612078 14612349 -127659095 - L1 LINE L1 -1984 4162 3902 13794 141 16 36 chr9 14612349 14614152 -127657292 - Tigger1 DNA MER2_type -1 2417 580 2228 100 3 0 chr9 14614152 14614443 -127657001 - AluSq SINE Alu -21 292 1 13794 141 16 36 chr9 14614443 14614491 -127656953 - Tigger1 DNA MER2_type -1838 580 533 1749 178 3 3 chr9 14614491 14614789 -127656655 - AluJo SINE Alu -9 303 6 13794 141 16 36 chr9 14614789 14615401 -127656043 - Tigger1 DNA MER2_type -1885 533 2 683 249 110 74 chr9 14615401 14615667 -127655777 - L1 LINE L1 -2244 3902 3606 21 36 0 0 chr9 14615667 14615695 -127655749 + AT_rich Low_complexity Low_complexity 1 28 0 2005 131 35 35 chr9 14615724 14616097 -127655347 - THE1C LTR MaLR -2 373 1 803 230 20 5 chr9 14616510 14616714 -127654730 + L1M4 LINE L1 2670 2876 -3270 21326 34 8 0 chr9 14616748 14620130 -127651314 - L1PA4 LINE L1 -3 6152 2748 15408 54 6 1 chr9 14620130 14622108 -127649336 + L1PA4 LINE L1 766 2751 -3395 25 31 0 0 chr9 14622286 14622318 -127649126 + AT_rich Low_complexity Low_complexity 1 32 0 209 244 158 12 chr9 14622574 14622656 -127648788 + MIR SINE MIR 150 243 -19 27 73 0 0 chr9 14622750 14622805 -127648639 + AT_rich Low_complexity Low_complexity 1 55 0 458 270 31 75 chr9 14622811 14623037 -127648407 + MIR SINE MIR 47 262 0 23 78 0 0 chr9 14624506 14624557 -127646887 + AT_rich Low_complexity Low_complexity 1 51 0 1582 193 30 7 chr9 14624665 14624966 -127646478 + AluJo SINE Alu 3 310 -2 362 141 0 26 chr9 14624971 14625049 -127646395 + (GGA)n Simple_repeat Simple_repeat 3 78 0 31 44 0 0 chr9 14625930 14625975 -127645469 + AT_rich Low_complexity Low_complexity 1 45 0 473 276 63 16 chr9 14626138 14626265 -127645179 - MER5B DNA MER1_type 0 178 46 1553 173 14 11 chr9 14626267 14626550 -127644894 - L1MC1 LINE L1 -4 6329 6046 2308 113 0 0 chr9 14626557 14626868 -127644576 - AluSq SINE Alu -2 311 1 341 327 129 25 chr9 14627223 14627305 -127644139 + MIR SINE MIR 28 100 -162 2353 92 3 3 chr9 14627305 14627610 -127643834 - AluY SINE Alu -6 305 1 341 327 129 25 chr9 14627610 14627729 -127643715 + MIR SINE MIR 100 250 -12 21 36 0 0 chr9 14630362 14630390 -127641054 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chr9 14631096 14631116 -127640328 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1717 136 38 4 chr9 14631122 14631386 -127640058 - AluSx SINE Alu -39 273 1 323 354 9 9 chr9 14632504 14632617 -127638827 + MIR SINE MIR 21 133 -129 2139 136 3 0 chr9 14633214 14633522 -127637922 - AluSq SINE Alu -4 309 1 271 203 87 14 chr9 14634265 14634334 -127637110 + MIR3 SINE MIR 130 203 -5 1188 131 11 0 chr9 14635753 14635936 -127635508 - AluSg/x SINE Alu -6 306 122 1894 128 30 20 chr9 14636145 14636449 -127634995 + AluSc SINE Alu 1 307 -2 2006 190 53 25 chr9 14636801 14637290 -127634154 + MLT1D LTR MaLR 1 503 -2 238 176 0 0 chr9 14637505 14637556 -127633888 + L1MA4A LINE L1 6005 6055 -248 281 250 62 91 chr9 14637951 14638159 -127633285 - MLT1L LTR MaLR -74 541 235 1803 175 0 3 chr9 14639060 14639357 -127632087 - AluJb SINE Alu -14 298 3 1020 207 87 103 chr9 14639595 14639951 -127631493 + MER39 LTR ERV1 5 522 -185 2240 98 0 25 chr9 14639951 14640268 -127631176 + AluY SINE Alu 3 311 0 1020 207 87 103 chr9 14640268 14640452 -127630992 + MER39 LTR ERV1 522 707 0 197 236 73 55 chr9 14640576 14640631 -127630813 + L2 LINE L2 3204 3259 -54 186 350 100 17 chr9 14640625 14640745 -127630699 + MIR SINE MIR 46 175 -87 * 442 275 36 0 chr9 14640871 14641009 -127630435 + MIR3 SINE MIR 58 200 -8 22 35 0 0 chr9 14643606 14643635 -127627809 + AT_rich Low_complexity Low_complexity 1 29 0 633 250 132 23 chr9 14644166 14644386 -127627058 + MIR SINE MIR 9 252 -10 303 298 26 40 chr9 14644382 14644533 -127626911 - MIR SINE MIR -108 154 6 * 585 224 170 0 chr9 14644533 14644680 -127626764 + MER5A DNA MER1_type 10 181 -8 234 0 0 0 chr9 14644925 14644951 -127626493 + (TA)n Simple_repeat Simple_repeat 2 27 0 1511 134 25 109 chr9 14644966 14645287 -127626157 - AluYb8 SINE Alu -24 294 1 426 297 95 18 chr9 14645427 14645649 -127625795 + MIR SINE MIR 13 251 -11 23 0 0 0 chr9 14646875 14646898 -127624546 + AT_rich Low_complexity Low_complexity 1 23 0 2856 157 4 6 chr9 14647540 14648042 -127623402 - L1MA3 LINE L1 -5 6300 5800 564 209 68 31 chr9 14648369 14648532 -127622912 + MER104 DNA Tc2 2 170 -10 249 139 0 0 chr9 14648647 14648690 -127622754 + (A)n Simple_repeat Simple_repeat 1 43 0 201 191 0 24 chr9 14649726 14649768 -127621676 + (CATA)n Simple_repeat Simple_repeat 4 44 0 427 176 80 22 chr9 14649783 14649947 -127621497 + MER104 DNA Tc2 3 177 -3 609 276 102 18 chr9 14649956 14650181 -127621263 - MIR SINE MIR -1 261 18 605 283 102 0 chr9 14650949 14651136 -127620308 + MIR SINE MIR 54 259 -3 765 256 81 18 chr9 14651764 14651987 -127619457 + MIR SINE MIR 14 250 -12 1060 234 83 18 chr9 14652814 14653152 -127618292 + L1ME3 LINE L1 5802 6161 -1 219 36 0 0 chr9 14654469 14654497 -127616947 + (TG)n Simple_repeat Simple_repeat 1 28 0 21 0 0 0 chr9 14654614 14654635 -127616809 + AT_rich Low_complexity Low_complexity 1 21 0 362 305 37 24 chr9 14655355 14655418 -127616026 - MER5B DNA MER1_type -3 175 114 1708 142 0 58 chr9 14655418 14655727 -127615717 + AluSx SINE Alu 1 291 -21 362 305 37 24 chr9 14655727 14655827 -127615617 - MER5B DNA MER1_type -64 114 10 1071 164 11 0 chr9 14655844 14656027 -127615417 - MER5A DNA MER1_type -4 185 1 2097 122 7 0 chr9 14656454 14656748 -127614696 - AluSx SINE Alu -16 296 1 1693 186 58 35 chr9 14657233 14657610 -127613834 + MLT1B LTR MaLR 1 386 -4 400 238 77 71 chr9 14658252 14658420 -127613024 - MIR SINE MIR -43 219 51 374 303 97 7 chr9 14659442 14659587 -127611857 - MIR3 SINE MIR -5 203 46 299 358 24 12 chr9 14660111 14660276 -127611168 - MIR SINE MIR -5 257 91 * 338 290 193 17 chr9 14660267 14660443 -127611001 + MIR SINE MIR 49 255 -7 2165 149 3 32 chr9 14660576 14660951 -127610493 + THE1B LTR MaLR 1 364 0 11196 112 6 0 chr9 14660952 14662520 -127608924 + THE1B-int LTR MaLR 3 1580 0 2380 126 3 29 chr9 14662520 14662894 -127608550 + THE1B LTR MaLR 1 364 0 1961 157 0 10 chr9 14663132 14663437 -127608007 - AluSx SINE Alu -10 302 1 330 288 45 9 chr9 14663460 14663571 -127607873 + L2 LINE L2 3198 3312 -1 21 36 0 0 chr9 14665276 14665304 -127606140 + AT_rich Low_complexity Low_complexity 1 28 0 414 313 22 89 chr9 14665421 14665645 -127605799 + MIR SINE MIR 12 220 -42 12586 170 13 16 chr9 14666393 14669275 -127602169 + L1PA14 LINE L1 2800 5778 -383 2537 64 0 3 chr9 14669275 14669586 -127601858 + AluY SINE Alu 1 310 -1 12586 170 13 16 chr9 14669586 14669966 -127601478 + L1PA14 LINE L1 5778 6158 -3 675 226 59 23 chr9 14670202 14670423 -127601021 - MER106A DNA MER1_type -7 229 1 222 37 0 0 chr9 14670668 14670695 -127600749 + (GGAA)n Simple_repeat Simple_repeat 4 30 0 813 45 63 0 chr9 14670695 14670806 -127600638 + L1PA4 LINE L1 6035 6152 -3 26 0 0 0 chr9 14670806 14670832 -127600612 + AT_rich Low_complexity Low_complexity 1 26 0 275 333 81 0 chr9 14671074 14671197 -127600247 + MIR SINE MIR 53 185 -77 196 333 31 21 chr9 14671217 14671313 -127600131 + L2 LINE L2 2799 2895 -419 1773 154 17 7 chr9 14671465 14671763 -127599681 - LTR1 LTR ERV1 0 785 485 1543 162 68 11 chr9 14672210 14672488 -127598956 + AluJb SINE Alu 11 304 -8 359 298 147 18 chr9 14672704 14672929 -127598515 - MIR SINE MIR -2 260 7 216 0 0 0 chr9 14673035 14673059 -127598385 + (CA)n Simple_repeat Simple_repeat 1 24 0 316 251 158 42 chr9 14673066 14673281 -127598163 - L1ME4a LINE L1 -157 5964 5725 417 268 51 51 chr9 14673620 14673777 -127597667 + MIR SINE MIR 34 190 -72 520 252 76 0 chr9 14674975 14675106 -127596338 - MER69A DNA AcHobo 0 177 37 21 0 0 0 chr9 14676268 14676289 -127595155 + AT_rich Low_complexity Low_complexity 1 21 0 199 294 43 33 chr9 14677726 14677818 -127593626 + MIR SINE MIR 148 240 -22 252 360 13 27 chr9 14678103 14678253 -127593191 - MIR3 SINE MIR -41 167 20 276 346 58 10 chr9 14678317 14678421 -127593023 - L2 LINE L2 -9 3304 3196 210 171 26 26 chr9 14678735 14678811 -127592633 + GA-rich Low_complexity Low_complexity 2 77 0 1279 200 35 46 chr9 14678828 14679113 -127592331 + AluJo SINE Alu 1 282 -30 315 49 0 0 chr9 14679118 14679159 -127592285 + (GA)n Simple_repeat Simple_repeat 2 42 0 374 271 97 26 chr9 14680636 14680791 -127590653 - MIR SINE MIR -44 218 53 24 32 0 0 chr9 14681545 14681576 -127589868 + AT_rich Low_complexity Low_complexity 1 31 0 476 111 33 11 chr9 14681594 14681684 -127589760 - L1PA4 LINE L1 -3 6152 6061 23 0 0 0 chr9 14682185 14682208 -127589236 + AT_rich Low_complexity Low_complexity 1 23 0 200 350 12 25 chr9 14682477 14682557 -127588887 - L2 LINE L2 -612 2702 2624 2409 87 3 3 chr9 14682684 14682993 -127588451 - AluSg SINE Alu 0 310 2 192 318 16 16 chr9 14683039 14683102 -127588342 + MIR SINE MIR 3 65 -197 239 344 64 8 chr9 14684350 14684475 -127586969 - MIR SINE MIR -74 188 57 234 257 57 14 chr9 14685992 14686062 -127585382 - MIR SINE MIR -69 193 121 211 263 95 21 chr9 14686134 14686229 -127585215 + L2 LINE L2 3167 3268 -4 348 315 66 11 chr9 14686489 14686670 -127584774 + L1ME4a LINE L1 5638 5828 -293 271 200 0 0 chr9 14686697 14686752 -127584692 - L1ME3A LINE L1 -5 6165 6111 301 215 28 37 chr9 14686942 14687049 -127584395 + L1ME4a LINE L1 5946 6051 -70 270 299 0 0 chr9 14688708 14688785 -127582659 + MIR SINE MIR 84 160 -102 227 209 0 0 chr9 14688860 14688903 -127582541 + MIR SINE MIR 109 151 -57 21 89 0 0 chr9 14689644 14689700 -127581744 + AT_rich Low_complexity Low_complexity 1 56 0 23 33 0 0 chr9 14690156 14690186 -127581258 + AT_rich Low_complexity Low_complexity 1 30 0 1364 94 59 10 chr9 14690477 14690680 -127580764 + L1PA8 LINE L1 5954 6166 -6 358 252 238 14 chr9 14690746 14690893 -127580551 + MIR SINE MIR 82 261 -1 264 255 0 0 chr9 14691476 14691527 -127579917 - L2 LINE L2 -4 3268 3218 674 281 110 26 chr9 14691550 14691895 -127579549 - MLT1I LTR MaLR -20 389 16 1558 68 5 0 chr9 14692272 14692464 -127578980 + AluSp SINE Alu 1 193 -120 250 75 0 0 chr9 14692464 14692504 -127578940 + AluSp SINE Alu 261 300 -2 2835 159 4 6 chr9 14694062 14694564 -127576880 + L1MA3 LINE L1 5800 6300 -5 23 0 0 0 chr9 14695208 14695231 -127576213 + AT_rich Low_complexity Low_complexity 1 23 0 267 361 33 8 chr9 14696482 14696604 -127574840 + MIR SINE MIR 61 185 -77 185 276 35 0 chr9 14697031 14697089 -127574355 + L2 LINE L2 3254 3313 0 2333 81 0 42 chr9 14697224 14697533 -127573911 - AluSq SINE Alu -17 296 1 965 224 85 4 chr9 14697572 14697831 -127573613 - MER63 DNA MER1_type 0 1062 783 24 32 0 0 chr9 14698108 14698139 -127573305 + AT_rich Low_complexity Low_complexity 1 31 0 4977 58 6 6 chr9 14698233 14698883 -127572561 + L1PA8 LINE L1 5523 6172 0 11701 36 4 0 chr9 14699153 14701269 -127570175 + L1PA4 LINE L1 3880 5999 -156 240 111 0 0 chr9 14701727 14701763 -127569681 + (CTAA)n Simple_repeat Simple_repeat 1 36 0 324 70 0 0 chr9 14703406 14703449 -127567995 + (TG)n Simple_repeat Simple_repeat 2 44 0 396 0 0 0 chr9 14704594 14704638 -127566806 + (TA)n Simple_repeat Simple_repeat 2 45 0 333 0 0 0 chr9 14704639 14704676 -127566768 + (CA)n Simple_repeat Simple_repeat 1 37 0 2093 117 3 0 chr9 14705204 14705536 -127565908 + AluSx SINE Alu 1 333 0 348 254 108 39 chr9 14705656 14705786 -127565658 + MIR SINE MIR 16 154 -108 680 224 13 19 chr9 14705864 14706020 -127565424 + MER5B DNA MER1_type 24 178 0 209 329 29 0 chr9 14707489 14707559 -127563885 - L2 LINE L2 -1 3271 3200 302 329 48 27 chr9 14707617 14707763 -127563681 + MIR SINE MIR 57 205 -57 246 224 0 0 chr9 14708078 14708127 -127563317 + GA-rich Low_complexity Low_complexity 2 50 0 810 231 23 0 chr9 14708228 14708401 -127563043 + MER45A DNA AcHobo 2 178 0 398 235 110 29 chr9 14709135 14709148 -127562296 - L3 LINE CR1 -159 1418 1407 2246 120 0 0 chr9 14709148 14709447 -127561997 - AluSx SINE Alu -8 304 6 398 235 110 29 chr9 14709447 14709569 -127561875 - L3 LINE CR1 -170 1407 1272 182 367 0 62 chr9 14710753 14710881 -127560563 - MIR SINE MIR -120 142 23 32 0 0 0 chr9 14711223 14711255 -127560189 + AT_rich Low_complexity Low_complexity 1 32 0 311 261 54 9 chr9 14712211 14712322 -127559122 + MIR SINE MIR 147 262 0 265 303 91 45 chr9 14713003 14713135 -127558309 - MIR3 SINE MIR -38 170 33 991 282 4 20 chr9 14713216 14713468 -127557976 - MIR SINE MIR -10 252 5 198 71 0 0 chr9 14715953 14715981 -127555463 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 21 82 0 0 chr9 14717336 14717385 -127554059 + AT_rich Low_complexity Low_complexity 1 49 0 891 313 36 48 chr9 14720244 14720637 -127550807 + L3 LINE CR1 983 1370 -207 685 233 138 35 chr9 14720779 14721011 -127550433 - L2 LINE L2 0 3313 3058 418 263 53 7 chr9 14721611 14721763 -127549681 - MLT1J LTR MaLR -4 507 349 261 366 52 22 chr9 14721952 14722086 -127549358 - MIR SINE MIR -55 153 16 287 267 47 12 chr9 14724345 14724431 -127547013 - MIR3 SINE MIR -9 199 111 348 24 0 0 chr9 14725136 14725177 -127546267 + (CA)n Simple_repeat Simple_repeat 1 41 0 2075 85 37 0 chr9 14727048 14727350 -127544094 - AluSg SINE Alu 0 312 1 448 217 273 0 chr9 14727925 14728068 -127543376 + MER5A DNA MER1_type 7 188 -1 269 26 26 0 chr9 14728284 14728322 -127543122 + (CA)n Simple_repeat Simple_repeat 1 39 0 342 338 164 17 chr9 14728341 14728572 -127542872 - L2 LINE L2 -3 3310 3046 311 332 111 29 chr9 14728840 14729120 -127542324 + LTR16C LTR ERVL 189 491 0 1282 261 155 34 chr9 14729122 14729687 -127541757 - L2 LINE L2 -266 3047 2414 368 314 84 26 chr9 14729961 14730187 -127541257 - MIR SINE MIR -10 252 14 1752 162 26 13 chr9 14730409 14730717 -127540727 - AluJb SINE Alu 0 312 1 197 330 55 118 chr9 14731716 14732167 -127539277 - L2 LINE L2 -14 3258 2836 892 215 0 0 chr9 14732291 14732454 -127538990 - FRAM SINE Alu -3 163 1 1638 105 149 0 chr9 14732483 14732731 -127538713 - AluSx SINE Alu -16 286 2 816 152 0 0 chr9 14732743 14732868 -127538576 - FLAM_C SINE Alu -8 125 1 32 57 0 0 chr9 14733099 14733152 -127538292 + AT_rich Low_complexity Low_complexity 1 53 0 256 306 98 27 chr9 14733739 14733900 -127537544 + MER5A DNA MER1_type 1 181 -8 574 183 179 0 chr9 14734024 14734176 -127537268 + MER5A DNA MER1_type 4 189 0 755 265 115 0 chr9 14734184 14734384 -127537060 + MER58A DNA MER1_type 1 223 -1 2212 123 3 0 chr9 14735186 14735494 -127535950 + AluSx SINE Alu 1 309 -3 771 255 21 65 chr9 14735605 14735665 -127535779 + LTR16C LTR ERVL 209 270 -221 2296 96 7 3 chr9 14735665 14735966 -127535478 - AluSc SINE Alu -7 302 1 771 255 21 65 chr9 14735966 14736194 -127535250 + LTR16C LTR ERVL 270 484 -7 1292 238 110 42 chr9 14736194 14736693 -127534751 + MLT1F LTR MaLR 1 593 0 533 357 75 27 chr9 14737140 14737541 -127533903 - MLT1K LTR MaLR -162 426 7 675 238 61 0 chr9 14738785 14738949 -127532495 - MER69A DNA AcHobo 0 177 4 634 295 45 37 chr9 14739155 14739399 -127532045 + MIR SINE MIR 17 262 0 1632 212 21 9 chr9 14739684 14740108 -127531336 + L1M4 LINE L1 4412 4840 -1306 21 36 0 0 chr9 14740289 14740317 -127531127 + AT_rich Low_complexity Low_complexity 1 28 0 2071 175 31 44 chr9 14741133 14741585 -127529859 - LTR47A LTR ERVL -6 446 1 220 355 125 5 chr9 14741599 14741799 -127529645 - L2 LINE L2 -530 2784 2561 1140 250 68 33 chr9 14742234 14742811 -127528633 - L1MC5 LINE L1 -35 7926 7330 564 247 38 59 chr9 14742859 14743045 -127528399 + MER20 DNA MER1_type 29 210 -9 10830 210 16 15 chr9 14743189 14748349 -127523095 - L1PA15 LINE L1 -13 6803 1220 2316 103 7 0 chr9 14748349 14748651 -127522793 - AluY SINE Alu -7 304 1 10830 210 16 15 chr9 14748651 14749872 -127521572 - L1PA15 LINE L1 -5596 1220 1 453 129 10 40 chr9 14749882 14749983 -127521461 - L1MC5 LINE L1 -784 7177 7080 359 326 52 7 chr9 14750692 14750827 -127520617 - MLT1K LTR MaLR -391 197 57 183 335 150 17 chr9 14752055 14752228 -127519216 - L3b LINE CR1 -102 1481 1286 885 307 69 10 chr9 14752541 14752956 -127518488 + LTR16A LTR ERVL 1 442 -15 1133 271 44 53 chr9 14752972 14753425 -127518019 + HERV16 LTR ERVL 1 449 -4547 357 304 35 8 chr9 14753577 14753754 -127517690 + LTR16A1 LTR ERVL 33 211 -239 243 188 0 0 chr9 14754136 14754184 -127517260 + CT-rich Low_complexity Low_complexity 5 52 0 330 300 158 0 chr9 14754609 14754729 -127516715 - MIR3 SINE MIR -39 169 31 24 32 0 0 chr9 14754815 14754846 -127516598 + AT_rich Low_complexity Low_complexity 1 31 0 212 216 0 74 chr9 14754964 14755112 -127516332 + CT-rich Low_complexity Low_complexity 2 138 0 410 315 52 4 chr9 14756491 14756723 -127514721 - L1ME4a LINE L1 -276 5845 5603 291 366 91 0 chr9 14757472 14757658 -127513786 + MIR SINE MIR 60 262 0 223 283 17 17 chr9 14757915 14757975 -127513469 + MIR3 SINE MIR 97 156 -52 2087 113 55 0 chr9 14758082 14758374 -127513070 + AluSx SINE Alu 1 308 -4 22 0 0 0 chr9 14758410 14758432 -127513012 + AT_rich Low_complexity Low_complexity 1 22 0 1444 194 132 52 chr9 14758804 14759268 -127512176 + MLT1D LTR MaLR 5 505 0 24 0 0 0 chr9 14761508 14761532 -127509912 + AT_rich Low_complexity Low_complexity 1 24 0 324 315 8 8 chr9 14761824 14761951 -127509493 + MLT1L LTR MaLR 118 244 -371 387 293 103 8 chr9 14762002 14762255 -127509189 + MLT1L LTR MaLR 331 607 -8 351 0 0 0 chr9 14762387 14762426 -127509018 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 296 307 35 26 chr9 14764516 14764630 -127506814 + MIR SINE MIR 10 124 -138 192 276 26 92 chr9 14764671 14764747 -127506697 - L2 LINE L2 0 3313 3243 248 217 43 29 chr9 14764781 14764850 -127506594 + MIR SINE MIR 192 261 -1 365 301 108 42 chr9 14766463 14766798 -127504646 - MLT1I LTR MaLR 0 409 53 1574 121 0 27 chr9 14766958 14767214 -127504230 - L1PA16 LINE L1 -1 6165 5917 1876 125 3 3 chr9 14767214 14767511 -127503933 + L1PA16 LINE L1 5611 5907 -259 949 176 58 0 chr9 14767571 14767759 -127503685 + MER20 DNA MER1_type 1 199 -20 243 205 0 64 chr9 14767835 14767913 -127503531 + L1ME2 LINE L1 4747 4819 -1327 367 317 21 14 chr9 14767944 14768086 -127503358 + L1ME2 LINE L1 4910 5052 -1094 3140 215 71 18 chr9 14768266 14768327 -127503117 + L1MC3 LINE L1 6797 6853 -932 207 0 0 0 chr9 14768327 14768350 -127503094 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3140 215 71 18 chr9 14768350 14769221 -127502223 + L1MC3 LINE L1 6853 7778 -7 262 274 14 7 chr9 14769246 14769392 -127502052 + L1M2 LINE L1 5299 5445 -867 999 106 0 0 chr9 14769440 14769572 -127501872 - AluYb8 SINE Alu -186 132 1 2071 137 0 7 chr9 14769663 14769969 -127501475 + AluJb SINE Alu 9 312 0 368 236 90 46 chr9 14770016 14770086 -127501358 + L1ME2 LINE L1 5601 5666 -498 1959 140 19 29 chr9 14770086 14770465 -127500979 + THE1C LTR MaLR 1 375 0 368 236 90 46 chr9 14770465 14770593 -127500851 + L1ME2 LINE L1 5666 5804 -360 224 139 69 28 chr9 14770613 14770685 -127500759 + (TATATG)n Simple_repeat Simple_repeat 2 76 0 297 206 168 76 chr9 14771014 14771145 -127500299 + MER5A DNA MER1_type 47 189 0 190 196 22 22 chr9 14771424 14771470 -127499974 + L2 LINE L2 1190 1235 -2079 295 231 122 103 chr9 14771970 14772281 -127499163 + MLT1H LTR MaLR 230 546 -3 558 198 16 110 chr9 14774000 14774182 -127497262 + L1ME2 LINE L1 5965 6129 -35 669 304 99 21 chr9 14774190 14774473 -127496971 - L2 LINE L2 -470 2844 2540 207 0 0 0 chr9 14774483 14774506 -127496938 + (CTGTG)n Simple_repeat Simple_repeat 2 24 0 819 249 179 6 chr9 14774506 14774864 -127496580 + LTR16A LTR ERVL 26 445 -5 294 244 23 12 chr9 14774994 14775080 -127496364 + MIR SINE MIR 60 146 -62 201 39 0 0 chr9 14775373 14775399 -127496045 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 356 287 70 9 chr9 14775527 14775642 -127495802 + L2 LINE L2 2934 3055 -217 1205 251 51 11 chr9 14776111 14776599 -127494845 + MLT1H1 LTR MaLR 1 555 0 1985 130 39 41 chr9 14776788 14777150 -127494294 - THE1B LTR MaLR -3 361 1 1506 150 27 11 chr9 14777189 14777449 -127493995 + AluJo SINE Alu 49 312 0 615 157 157 0 chr9 14777488 14777596 -127493848 + FLAM_C SINE Alu 1 125 -18 184 212 82 129 chr9 14777951 14777988 -127493456 + MER5A DNA MER1_type 97 134 -55 2445 75 10 0 chr9 14777988 14778296 -127493148 - AluSp SINE Alu -1 312 2 184 212 82 129 chr9 14778296 14778343 -127493101 + MER5A DNA MER1_type 134 177 -12 2104 119 3 10 chr9 14778906 14779209 -127492235 + AluSx SINE Alu 1 301 -11 814 245 39 10 chr9 14782023 14782227 -127489217 - MIR SINE MIR 0 262 53 2272 117 0 13 chr9 14784663 14784979 -127486465 + AluSx SINE Alu 1 312 0 2010 133 11 0 chr9 14786623 14786908 -127484536 - AluSx SINE Alu -24 288 1 1034 292 31 58 chr9 14787287 14787922 -127483522 - L2 LINE L2 -5 3308 2694 881 233 193 7 chr9 14788005 14788310 -127483134 + LTR50 LTR ERVL 23 384 -411 553 205 176 5 chr9 14788338 14788548 -127482896 + LTR50 LTR ERVL 547 792 -3 1238 279 71 8 chr9 14788550 14788944 -127482500 - L2 LINE L2 -614 2700 2282 323 314 51 8 chr9 14789075 14789193 -127482251 + MIR SINE MIR 17 139 -123 467 270 72 7 chr9 14789292 14789444 -127482000 + MIR SINE MIR 84 245 -17 2416 115 13 13 chr9 14789694 14790069 -127481375 + THE1C LTR MaLR 1 375 0 339 285 190 22 chr9 14790334 14790513 -127480931 + MIR SINE MIR 3 211 -51 2046 124 0 0 chr9 14790598 14790872 -127480572 - AluSx SINE Alu -17 295 22 22 0 0 0 chr9 14791503 14791525 -127479919 + AT_rich Low_complexity Low_complexity 1 22 0 351 0 0 0 chr9 14793310 14793349 -127478095 + (CA)n Simple_repeat Simple_repeat 2 40 0 459 0 0 0 chr9 14794815 14794866 -127476578 + (TA)n Simple_repeat Simple_repeat 1 51 0 309 354 41 7 chr9 14794938 14795120 -127476324 + MIR SINE MIR 5 192 -62 464 321 51 19 chr9 14795538 14795753 -127475691 - MIR SINE MIR -29 233 12 2189 100 3 3 chr9 14796356 14796655 -127474789 + AluSg SINE Alu 1 299 -11 520 273 110 89 chr9 14796947 14797657 -127473787 + L1ME4a LINE L1 5379 6103 -18 838 213 19 128 chr9 14798866 14799233 -127472211 - L1MC4 LINE L1 -1179 6863 6537 386 273 8 0 chr9 14799404 14799525 -127471919 - L1MC4 LINE L1 -1461 6581 6460 504 0 0 0 chr9 14800072 14800128 -127471316 + (TG)n Simple_repeat Simple_repeat 1 56 0 607 280 185 49 chr9 14800348 14800716 -127470728 + MLT1J2 LTR MaLR 31 448 -2 452 76 0 0 chr9 14800839 14800905 -127470539 - AluY SINE Alu -6 305 240 1442 80 0 0 chr9 14800905 14801081 -127470363 - AluY SINE Alu -135 176 1 197 286 82 61 chr9 14802636 14802734 -127468710 - L2 LINE L2 -5 3267 3168 348 323 92 15 chr9 14802786 14802916 -127468528 - MER91A DNA MER1_type -21 175 36 223 244 0 0 chr9 14803845 14803890 -127467554 + GA-rich Low_complexity Low_complexity 1 45 0 400 377 14 0 chr9 14803940 14804086 -127467358 + MIR3 SINE MIR 32 179 -29 212 172 0 31 chr9 14804738 14804802 -127466642 + GA-rich Low_complexity Low_complexity 3 64 0 5443 124 21 3 chr9 14805312 14806670 -127464774 - L1PA15 LINE L1 -3 6162 4765 2318 274 49 21 chr9 14806674 14808001 -127463443 - L1PA13 LINE L1 -4962 1825 1 600 272 97 9 chr9 14808531 14808748 -127462696 - MIR SINE MIR -6 256 21 515 268 56 62 chr9 14810202 14810542 -127460902 + L1MC4a LINE L1 5727 6064 -1744 22 35 0 0 chr9 14810711 14810740 -127460704 + AT_rich Low_complexity Low_complexity 1 29 0 243 246 0 0 chr9 14810768 14810825 -127460619 - L1 LINE L1 -1208 4938 4882 761 209 20 7 chr9 14810951 14811104 -127460340 - FRAM SINE Alu -11 155 1 354 318 43 51 chr9 14811239 14811420 -127460024 - L1 LINE L1 -1537 4609 4428 9604 80 18 4 chr9 14811420 14813534 -127457910 - L1PA7 LINE L1 -2 6152 4018 354 318 43 51 chr9 14813534 14813818 -127457626 - L1 LINE L1 -1718 4428 4132 252 0 0 0 chr9 14815304 14815332 -127456112 + (TG)n Simple_repeat Simple_repeat 2 29 0 208 250 0 0 chr9 14816675 14816731 -127454713 + A-rich Low_complexity Low_complexity 1 56 0 286 304 22 0 chr9 14816731 14816820 -127454624 + L3 LINE CR1 1392 1482 -95 420 254 177 8 chr9 14816820 14816950 -127454494 - MER5A DNA MER1_type 0 189 38 2191 120 13 0 chr9 14817987 14818295 -127453149 + AluSq SINE Alu 1 312 -1 568 274 84 31 chr9 14818872 14819098 -127452346 + MIR SINE MIR 15 252 -10 333 251 82 88 chr9 14819114 14819285 -127452159 + MIR SINE MIR 79 248 -14 21 0 0 0 chr9 14819299 14819320 -127452124 + AT_rich Low_complexity Low_complexity 1 21 0 207 391 68 24 chr9 14819956 14820163 -127451281 + L2 LINE L2 2679 2894 -420 258 264 91 0 chr9 14820248 14820369 -127451075 + L1MEd LINE L1 46 177 -5942 251 324 102 36 chr9 14820497 14820722 -127450722 + L1MEd LINE L1 307 546 -5573 281 217 79 122 chr9 14821056 14821425 -127450019 + L1MEd LINE L1 895 1247 -4872 335 319 77 64 chr9 14821477 14821712 -127449732 + L1MEc LINE L1 111 348 -6048 4114 143 58 23 chr9 14822449 14823193 -127448251 - LTR1 LTR ERV1 0 785 16 1269 286 135 29 chr9 14823423 14824420 -127447024 + L1MEc LINE L1 1265 2367 -4029 3316 225 44 22 chr9 14824499 14825627 -127445817 - L1ME1 LINE L1 0 6166 5018 395 278 181 29 chr9 14825845 14826387 -127445057 + L1P LINE L1 4027 4667 -1479 189 0 0 0 chr9 14829493 14829514 -127441930 + (T)n Simple_repeat Simple_repeat 1 21 0 2155 128 0 0 chr9 14830146 14830436 -127441008 - AluSx SINE Alu -22 290 1 550 184 53 9 chr9 14831156 14831270 -127440174 + MLT1A1 LTR MaLR 4 122 -243 313 242 247 42 chr9 14831755 14831945 -127439499 + MIR SINE MIR 28 256 -6 217 359 101 38 chr9 14833007 14833166 -127438278 - L3 LINE CR1 -3 1574 1406 200 233 0 0 chr9 14833204 14833247 -127438197 + (TA)n Simple_repeat Simple_repeat 2 44 0 581 324 70 9 chr9 14833291 14833504 -127437940 + MIR SINE MIR 37 262 0 453 216 10 49 chr9 14833551 14833653 -127437791 - Tigger7 DNA MER2_type 0 2587 2490 * 1294 167 108 4 chr9 14833652 14833892 -127437552 - Tigger7 DNA MER2_type -466 267 3 418 289 37 44 chr9 14834106 14834365 -127437079 - L1ME3A LINE L1 -225 5945 5691 256 330 33 0 chr9 14834388 14834479 -127436965 - L3 LINE CR1 -211 1366 1273 2215 186 22 5 chr9 14834749 14835162 -127436282 - MSTB LTR MaLR -6 420 1 28 61 0 0 chr9 14835316 14835365 -127436079 + AT_rich Low_complexity Low_complexity 1 49 0 849 187 187 0 chr9 14835805 14836003 -127435441 + MER46A DNA MER2_type 1 235 -1 226 330 23 29 chr9 14836047 14836220 -127435224 - L1MC/D LINE L1 -1954 5854 5683 311 261 87 26 chr9 14836220 14836335 -127435109 - L2 LINE L2 -10 3303 3182 21 0 0 0 chr9 14836747 14836768 -127434676 + AT_rich Low_complexity Low_complexity 1 21 0 37 0 0 0 chr9 14836942 14836979 -127434465 + AT_rich Low_complexity Low_complexity 1 37 0 363 23 0 0 chr9 14837020 14837064 -127434380 + (TTA)n Simple_repeat Simple_repeat 2 45 0 2505 77 3 0 chr9 14837110 14837422 -127434022 - AluSp SINE Alu 0 313 1 26 30 0 0 chr9 14837496 14837529 -127433915 + AT_rich Low_complexity Low_complexity 1 33 0 314 331 41 8 chr9 14838030 14838151 -127433293 + MIR SINE MIR 47 171 -91 716 252 26 17 chr9 14838476 14838706 -127432738 + L1ME3A LINE L1 5868 6099 -71 2293 76 3 0 chr9 14838804 14839092 -127432352 - AluY SINE Alu -22 289 1 252 244 16 41 chr9 14839135 14839258 -127432186 - L1ME4a LINE L1 -17 6104 5985 374 248 162 30 chr9 14839268 14839466 -127431978 - L1ME4a LINE L1 -195 5926 5703 183 42 0 0 chr9 14841999 14842023 -127429421 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1667 116 66 76 chr9 14842719 14843022 -127428422 - AluSx SINE Alu -12 300 1 1988 143 7 7 chr9 14843326 14843634 -127427810 + AluJb SINE Alu 1 308 -4 331 238 0 76 chr9 14844010 14844115 -127427329 + MIR SINE MIR 97 193 -69 6602 152 15 20 chr9 14844680 14845027 -127426417 - L1PB1 LINE L1 -1 6150 5802 222 37 0 0 chr9 14845027 14845054 -127426390 + (TG)n Simple_repeat Simple_repeat 2 28 0 6602 152 15 20 chr9 14845054 14846893 -127424551 - L1PB1 LINE L1 -349 5802 3977 236 374 12 0 chr9 14847372 14847455 -127423989 - L2 LINE L2 -3 3310 3227 212 158 0 0 chr9 14848570 14848608 -127422836 + CT-rich Low_complexity Low_complexity 1 38 0 369 131 0 0 chr9 14848625 14848686 -127422758 + (CA)n Simple_repeat Simple_repeat 2 62 0 324 0 0 0 chr9 14849139 14849175 -127422269 + (CA)n Simple_repeat Simple_repeat 2 37 0 277 272 39 39 chr9 14849302 14849446 -127421998 + MER5B DNA MER1_type 29 182 -7 180 163 0 0 chr9 14849471 14849514 -127421930 + (TGAA)n Simple_repeat Simple_repeat 3 45 0 272 371 41 6 chr9 14850569 14850734 -127420710 - MIR3 SINE MIR -13 195 22 2190 122 0 6 chr9 14851052 14851364 -127420080 + AluSx SINE Alu 1 310 -2 1689 165 14 14 chr9 14851631 14851928 -127419516 + AluSx SINE Alu 1 297 -15 753 270 133 6 chr9 14852879 14853201 -127418243 + MER115 DNA AcHobo 331 693 0 226 308 15 0 chr9 14854359 14854424 -127417020 + MIR SINE MIR 74 139 -123 396 93 47 23 chr9 14855598 14855684 -127415760 - L1MA9 LINE L1 0 6312 6225 3441 142 81 9 chr9 14855702 14856372 -127415072 - L1MA9 LINE L1 -149 6163 5446 1788 45 18 18 chr9 14856386 14856608 -127414836 - AluY SINE Alu -13 298 77 1019 193 57 5 chr9 14857876 14858088 -127413356 + MER58A DNA MER1_type 2 224 0 239 304 29 0 chr9 14859284 14859353 -127412091 + CT-rich Low_complexity Low_complexity 5 75 0 240 86 0 0 chr9 14859677 14859712 -127411732 + (TCC)n Simple_repeat Simple_repeat 1 35 0 264 282 28 0 chr9 14859878 14859949 -127411495 + (TATG)n Simple_repeat Simple_repeat 2 74 0 195 283 0 0 chr9 14861916 14861962 -127409482 - L2 LINE L2 -26 3287 3242 785 218 39 6 chr9 14861997 14862176 -127409268 - MIR SINE MIR 0 262 78 480 313 124 41 chr9 14862794 14863360 -127408084 - L2 LINE L2 -580 2734 2122 1065 186 38 0 chr9 14864441 14864651 -127406793 + MER20 DNA MER1_type 2 219 0 1713 156 27 16 chr9 14865081 14865421 -127406023 + THE1C LTR MaLR 1 399 -29 802 124 0 0 chr9 14865455 14865576 -127405868 - L1PB1 LINE L1 -1 6150 6030 231 54 54 0 chr9 14865584 14865621 -127405823 + THE1A LTR MaLR 317 355 0 1924 164 3 0 chr9 14866067 14866365 -127405079 + AluJb SINE Alu 1 299 -13 680 132 23 8 chr9 14866449 14866578 -127404866 + L1MA9 LINE L1 6175 6305 -7 275 236 83 90 chr9 14866808 14866952 -127404492 + L2 LINE L2 3166 3308 -5 429 296 25 0 chr9 14867099 14867261 -127404183 - L1ME1 LINE L1 -5 6161 5996 213 403 0 0 chr9 14867612 14867689 -127403755 + L2 LINE L2 3231 3307 -6 1990 137 0 3 chr9 14867773 14868072 -127403372 - AluSx SINE Alu -14 298 1 763 139 0 0 chr9 14868085 14868200 -127403244 - AluSp/q SINE Alu -14 299 185 2143 100 13 13 chr9 14869589 14869899 -127401545 + AluSx SINE Alu 1 310 -2 34 24 0 0 chr9 14869952 14869993 -127401451 + AT_rich Low_complexity Low_complexity 1 41 0 272 320 39 13 chr9 14870263 14870416 -127401028 - L1MDa LINE L1 -3572 3276 3120 612 306 91 8 chr9 14870417 14870659 -127400785 - MIR SINE MIR 0 262 1 912 173 70 9 chr9 14870952 14871166 -127400278 + MER33 DNA MER1_type 5 231 -93 938 171 0 24 chr9 14871169 14871333 -127400111 + FRAM SINE Alu 2 161 -15 352 137 10 128 chr9 14871333 14871435 -127400009 + MER33 DNA MER1_type 232 321 -3 334 199 166 40 chr9 14871978 14872129 -127399315 - L1MDa LINE L1 -4518 2330 2161 2994 196 77 13 chr9 14872347 14873418 -127398026 - L1ME1 LINE L1 -63 6103 4959 11869 200 88 5 chr9 14873539 14876183 -127395261 - L1M4 LINE L1 -3984 2865 2 21 0 0 0 chr9 14876185 14876206 -127395238 + AT_rich Low_complexity Low_complexity 1 21 0 1729 119 31 97 chr9 14876583 14876902 -127394542 - AluSx SINE Alu -14 298 1 215 345 34 61 chr9 14877577 14877725 -127393719 - L2 LINE L2 -609 2705 2562 22 0 0 0 chr9 14877874 14877896 -127393548 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr9 14878821 14878849 -127392595 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr9 14879007 14879032 -127392412 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr9 14881180 14881204 -127390240 + AT_rich Low_complexity Low_complexity 1 24 0 325 254 117 73 chr9 14882096 14882301 -127389143 + MIR SINE MIR 49 262 0 275 188 145 0 chr9 14882960 14883029 -127388415 + MIR SINE MIR 78 156 -106 1001 217 55 0 chr9 14883653 14883870 -127387574 - MLT1A1 LTR MaLR 0 365 137 324 258 45 8 chr9 14883915 14884047 -127387397 + MER103 DNA DNA 28 164 -2 21 0 0 0 chr9 14884524 14884545 -127386899 + AT_rich Low_complexity Low_complexity 1 21 0 892 259 110 5 chr9 14884636 14885045 -127386399 - L1ME4a LINE L1 -128 5993 5542 683 284 155 36 chr9 14885450 14885837 -127385607 + L2 LINE L2 2881 3313 0 285 29 0 0 chr9 14886311 14886345 -127385099 + (TC)n Simple_repeat Simple_repeat 1 34 0 233 287 226 11 chr9 14887088 14887269 -127384175 - L3 LINE CR1 -169 1408 1189 520 304 32 57 chr9 14887272 14887555 -127383889 + Charlie8 DNA MER1_type 1 276 -2141 253 353 67 20 chr9 14887723 14887873 -127383571 - L3 LINE CR1 -384 1193 1037 1190 207 102 23 chr9 14887877 14888220 -127383224 + MLT1A2 LTR MaLR 1 370 -4 189 364 20 10 chr9 14888299 14888398 -127383046 - L3 LINE CR1 -665 912 813 302 279 61 41 chr9 14888424 14888571 -127382873 + MIR3 SINE MIR 8 157 -51 832 156 0 0 chr9 14888955 14889077 -127382367 - FLAM_C SINE Alu -18 125 4 22 0 0 0 chr9 14891803 14891825 -127379619 + AT_rich Low_complexity Low_complexity 1 22 0 1766 174 11 27 chr9 14892140 14892514 -127378930 - MER73 LTR ERVL 0 644 277 213 204 0 41 chr9 14892522 14892571 -127378873 + CT-rich Low_complexity Low_complexity 3 49 0 1648 206 33 26 chr9 14892577 14893070 -127378374 - MER54A LTR ERVL -345 398 1 398 287 150 18 chr9 14894215 14894382 -127377062 + MIR SINE MIR 2 190 -72 418 330 74 37 chr9 14894680 14895113 -127376331 - LTR33 LTR ERVL 0 521 73 2354 114 0 6 chr9 14895134 14895449 -127375995 + AluSq SINE Alu 1 313 0 823 151 25 0 chr9 14895495 14895654 -127375790 + LTR24C LTR ERV1 473 635 0 295 167 20 98 chr9 14895654 14895756 -127375688 + L1MA9 LINE L1 5714 5790 -378 2011 179 43 14 chr9 14895798 14896154 -127375290 + L1MA9 LINE L1 5802 6175 -137 336 48 0 0 chr9 14896154 14896196 -127375248 + (CA)n Simple_repeat Simple_repeat 1 42 0 2011 179 43 14 chr9 14896196 14896285 -127375159 + L1MA9 LINE L1 6175 6260 -52 1558 184 89 77 chr9 14896292 14896721 -127374723 + MER21B LTR ERV1 1 434 -429 1657 179 0 0 chr9 14896829 14897091 -127374353 - AluJb SINE Alu -50 262 1 1338 57 0 0 chr9 14897275 14897464 -127373980 + AluY SINE Alu 124 312 0 4937 166 16 4 chr9 14897499 14898501 -127372943 - L1MA4 LINE L1 -817 5329 4316 825 178 19 0 chr9 14898502 14898659 -127372785 + L1MA4 LINE L1 5331 5490 -815 5383 184 30 17 chr9 14898661 14904241 -127367203 + L1PA13 LINE L1 217 5996 -818 2208 108 3 0 chr9 14904241 14904536 -127366908 + AluSc SINE Alu 1 296 -13 5383 184 30 17 chr9 14904536 14905366 -127366078 + L1PA13 LINE L1 5996 6814 0 4165 150 50 21 chr9 14905366 14906162 -127365282 + L1MA4 LINE L1 5476 6298 -2 253 228 18 123 chr9 14906328 14906442 -127365002 + L1MA9 LINE L1 2659 2760 -3386 4421 257 76 45 chr9 14906456 14908769 -127362675 + L1ME3 LINE L1 2919 5303 -843 1374 231 57 33 chr9 14908770 14909138 -127362306 + MLT1D LTR MaLR 123 499 -6 250 221 126 0 chr9 14909186 14909281 -127362163 + L1ME3 LINE L1 5680 5786 -376 2305 106 0 19 chr9 14909353 14909665 -127361779 - AluSq SINE Alu -7 306 1 1604 200 90 65 chr9 14909718 14910209 -127361235 - MLT1D LTR MaLR -2 503 1 617 329 148 34 chr9 14910577 14911231 -127360213 - L2 LINE L2 -1966 1348 620 267 330 94 52 chr9 14911262 14911529 -127359915 - L2 LINE L2 -874 2440 2163 2190 67 11 0 chr9 14911642 14911911 -127359533 - AluY SINE Alu -10 301 30 234 0 0 0 chr9 14911931 14911957 -127359487 + (CA)n Simple_repeat Simple_repeat 1 26 0 3196 197 57 40 chr9 14912300 14912783 -127358661 + L1MA9 LINE L1 3329 3833 -2313 1251 181 165 0 chr9 14912783 14913031 -127358413 + AluJb SINE Alu 1 289 -13 3196 197 57 40 chr9 14913031 14913371 -127358073 + L1MA9 LINE L1 3833 4166 -1980 2457 130 21 108 chr9 14913370 14913937 -127357507 + L1MA9 LINE L1 5410 5928 -384 * 187 127 79 0 chr9 14913942 14914005 -127357439 + (TA)n Simple_repeat Simple_repeat 1 68 0 1724 163 66 11 chr9 14914021 14914383 -127357061 + L1MA9 LINE L1 5931 6312 0 275 333 23 0 chr9 14914631 14914718 -127356726 + MIR SINE MIR 64 152 -110 182 388 24 24 chr9 14916328 14916413 -127355031 + MIR3 SINE MIR 5 89 -119 334 285 120 19 chr9 14916478 14916636 -127354808 + MIR SINE MIR 62 235 -27 498 202 22 0 chr9 14919269 14919358 -127352086 + MER58C DNA MER1_type 125 215 0 1010 233 20 8 chr9 14919503 14919748 -127351696 + L1ME3 LINE L1 5901 6148 -14 441 291 40 38 chr9 14919825 14920183 -127351261 + L1MEc LINE L1 1440 1858 -718 256 246 0 0 chr9 14920282 14920339 -127351105 + L1ME3 LINE L1 6092 6148 -14 2411 190 38 14 chr9 14920416 14920917 -127350527 - LTR53 LTR ERVL -2 517 5 319 177 16 48 chr9 14922392 14922454 -127348990 + MER20 DNA MER1_type 1 60 -159 5247 70 4 3 chr9 14922461 14923152 -127348292 - L1PA7 LINE L1 0 6154 5463 1868 98 0 0 chr9 14923152 14923416 -127348028 - L1P3 LINE L1 -6173 288 25 599 247 0 77 chr9 14923416 14923610 -127347834 + MER20 DNA MER1_type 41 219 0 279 0 0 0 chr9 14924143 14924174 -127347270 + (A)n Simple_repeat Simple_repeat 1 31 0 782 308 82 30 chr9 14925398 14925726 -127345718 - MLT1I LTR MaLR -13 396 52 2031 133 7 3 chr9 14926152 14926454 -127344990 - AluSc SINE Alu -6 303 1 238 313 157 15 chr9 14926841 14927109 -127344335 + L1MC/D LINE L1 5324 5629 -2179 2725 26 3 0 chr9 14927284 14927594 -127343850 + AluY SINE Alu 1 311 0 3177 257 34 12 chr9 14927923 14928867 -127342577 + L1MEc LINE L1 35 999 -5397 2065 123 7 0 chr9 14928898 14929191 -127342253 + AluSx SINE Alu 1 295 -17 2429 237 31 45 chr9 14929369 14929575 -127341869 + L1MB1 LINE L1 3459 3666 -3899 1715 164 13 13 chr9 14929575 14929880 -127341564 + AluJb SINE Alu 1 305 -7 2429 237 31 45 chr9 14929880 14930501 -127340943 + L1MB1 LINE L1 3666 4288 -3277 21 0 0 0 chr9 14930760 14930781 -127340663 + AT_rich Low_complexity Low_complexity 1 21 0 861 246 43 5 chr9 14931340 14931551 -127339893 + MER20 DNA MER1_type 1 219 0 28 0 0 0 chr9 14932173 14932201 -127339243 + AT_rich Low_complexity Low_complexity 1 28 0 270 0 0 0 chr9 14933838 14933868 -127337576 + (TTA)n Simple_repeat Simple_repeat 1 30 0 6916 58 18 0 chr9 14933869 14935045 -127336399 - L1PA7 LINE L1 -18 6136 4953 13208 89 11 9 chr9 14935047 14936947 -127334497 + L1PA7 LINE L1 3053 4954 -1192 1332 285 86 22 chr9 14937313 14937769 -127333675 - MLT1H LTR MaLR 0 549 65 1111 138 0 0 chr9 14937785 14937937 -127333507 - AluSg/x SINE Alu -26 286 135 241 306 28 0 chr9 14937937 14938009 -127333435 - MLT1H LTR MaLR -472 77 4 184 280 0 20 chr9 14938061 14938111 -127333333 - L2 LINE L2 -15 3298 3250 1891 109 0 0 chr9 14938141 14938389 -127333055 + AluSg SINE Alu 40 287 -23 3567 196 32 2 chr9 14938412 14939572 -127331872 - L1MA8 LINE L1 -291 6000 4805 740 261 34 25 chr9 14939742 14939980 -127331464 + MIR SINE MIR 12 251 -11 6146 205 77 7 chr9 14940141 14941636 -127329808 + L1MB1 LINE L1 5047 6646 -919 2173 147 61 7 chr9 14941642 14942050 -127329394 + L1MB1 LINE L1 7158 7587 0 323 271 146 21 chr9 14942236 14942380 -127329064 + MIR SINE MIR 97 258 -4 321 248 71 26 chr9 14942621 14942734 -127328710 - MLT1L LTR MaLR -71 544 427 2064 142 0 0 chr9 14942750 14943046 -127328398 - AluSx SINE Alu -16 296 1 1562 221 82 16 chr9 14944511 14944949 -127326495 - MLT1C LTR MaLR 0 467 1 530 306 15 20 chr9 14945241 14945437 -127326007 - L2 LINE L2 -189 3083 2889 264 316 106 80 chr9 14946038 14946275 -127325169 + L2 LINE L2 3030 3272 0 226 260 13 13 chr9 14948560 14948637 -127322807 - L1MC4 LINE L1 -40 8002 7926 227 91 0 45 chr9 14948649 14948693 -127322751 + (TAGA)n Simple_repeat Simple_repeat 2 43 0 2298 243 124 75 chr9 14948693 14950076 -127321368 - L1MC4 LINE L1 -133 7909 6460 609 165 39 0 chr9 14950928 14951031 -127320413 - Tigger1 DNA MER2_type 0 2418 2312 12533 137 23 19 chr9 14951032 14951140 -127320304 - Tigger1 DNA MER2_type -348 2070 1964 1875 119 0 11 chr9 14951140 14951417 -127320027 - AluSx SINE Alu 0 312 39 12533 137 23 19 chr9 14951417 14953369 -127318075 - Tigger1 DNA MER2_type -454 1964 2 615 305 114 39 chr9 14954978 14955386 -127316058 + L2 LINE L2 2812 3261 -52 2098 142 5 45 chr9 14955386 14955766 -127315678 - MLT1A1 LTR MaLR 0 365 1 615 305 114 39 chr9 14955766 14955822 -127315622 + L2 LINE L2 3261 3311 -2 1393 197 42 39 chr9 14956667 14957006 -127314438 + Tigger7 DNA MER2_type 1 2491 0 245 308 34 60 chr9 14957013 14957130 -127314314 - MIR3 SINE MIR -4 204 91 198 0 0 0 chr9 14957390 14957412 -127314032 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 2069 129 60 20 chr9 14958080 14958429 -127313015 - THE1B LTR MaLR 0 364 2 197 305 95 0 chr9 14958451 14958546 -127312898 - L2 LINE L2 -1 3271 3168 504 189 36 18 chr9 14958622 14958733 -127312711 + L1ME3 LINE L1 6020 6132 -30 2472 54 0 10 chr9 14959032 14959327 -127312117 + AluY SINE Alu 2 293 -18 237 251 70 87 chr9 14961241 14961410 -127310034 + MIR SINE MIR 21 192 -63 252 281 86 55 chr9 14961957 14962085 -127309359 + MIR SINE MIR 40 171 -91 308 179 80 19 chr9 14962228 14962390 -127309054 + (TA)n Simple_repeat Simple_repeat 1 172 0 5949 172 18 4 chr9 14962484 14963677 -127307767 - L1MC1 LINE L1 -6 6396 5187 * 19822 192 31 14 chr9 14963666 14966579 -127304865 - L1PA13 LINE L1 0 6814 3952 450 0 0 0 chr9 14966579 14966629 -127304815 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 19822 192 31 14 chr9 14966629 14970391 -127301053 - L1PA13 LINE L1 -2862 3952 2 2766 260 41 3 chr9 14970407 14971281 -127300163 - L1MC1 LINE L1 -1010 5205 4295 4288 40 4 0 chr9 14971281 14971803 -127299641 - L1PA4 LINE L1 -1 6154 5631 9006 27 7 0 chr9 14971803 14973108 -127298336 + L1PA4 LINE L1 4298 5607 -548 7438 241 33 15 chr9 14973109 14975518 -127295926 - L1MC1 LINE L1 -1898 4317 1914 292 318 40 0 chr9 14976197 14976323 -127295121 + MIR SINE MIR 88 218 -44 309 330 11 0 chr9 14976842 14976936 -127294508 + L2 LINE L2 3217 3311 -2 300 345 40 7 chr9 14976977 14977125 -127294319 - MIR SINE MIR -73 189 37 447 207 198 0 chr9 14977125 14977236 -127294208 + MER63 DNA MER1_type 1 759 -77 223 377 85 0 chr9 14978390 14978520 -127292924 + MIR3 SINE MIR 39 179 -29 594 254 169 0 chr9 14978923 14979100 -127292344 - MIR SINE MIR -6 256 50 431 319 108 11 chr9 14980641 14980790 -127290654 - MIR SINE MIR 0 262 90 7610 22 0 0 chr9 14980790 14981863 -127289581 - L1PA3 LINE L1 -1 6154 5093 431 319 108 11 chr9 14981863 14981898 -127289546 - MIR SINE MIR -172 90 60 435 198 0 41 chr9 14982795 14982967 -127288477 + (TA)n Simple_repeat Simple_repeat 2 166 0 415 236 12 6 chr9 14982998 14983322 -127288122 + (TA)n Simple_repeat Simple_repeat 1 326 0 917 221 47 50 chr9 14983337 14983596 -127287848 - L1ME3A LINE L1 -10 6160 5901 1448 151 62 127 chr9 14983596 14983967 -127287477 + MER7A DNA MER2_type 1 345 -1 917 221 47 50 chr9 14983967 14984006 -127287438 - L1ME3A LINE L1 -269 5901 5863 336 97 0 0 chr9 14984312 14984361 -127287083 + Alu SINE Alu 1 44 -256 1468 113 0 14 chr9 14984361 14984573 -127286871 + AluSg/x SINE Alu 90 298 -12 26 30 0 0 chr9 14984832 14984865 -127286579 + AT_rich Low_complexity Low_complexity 1 33 0 2098 125 46 25 chr9 14984927 14985294 -127286150 + THE1C LTR MaLR 1 375 0 226 322 101 20 chr9 14985986 14986135 -127285309 - MER117 DNA MER1_type -35 162 2 2620 178 36 27 chr9 14986632 14987215 -127284229 + L1MC3 LINE L1 7080 7667 -118 200 309 55 55 chr9 14987427 14987537 -127283907 + MIR3 SINE MIR 98 207 -1 369 62 0 0 chr9 14988120 14988168 -127283276 + (TTTTG)n Simple_repeat Simple_repeat 3 50 0 213 121 0 0 chr9 14988249 14988282 -127283162 + (TA)n Simple_repeat Simple_repeat 2 34 0 215 225 0 67 chr9 14988834 14988923 -127282521 + GA-rich Low_complexity Low_complexity 1 83 0 210 385 67 0 chr9 14989625 14989729 -127281715 + L2 LINE L2 3152 3262 -10 293 307 57 0 chr9 14990511 14990599 -127280845 - L2 LINE L2 0 3313 3221 759 296 120 29 chr9 14991217 14991568 -127279876 - MLT1I LTR MaLR -11 398 16 184 282 0 0 chr9 14993596 14993635 -127277809 - L2 LINE L2 -12 3301 3263 * 226 268 98 102 chr9 14993603 14993849 -127277595 - MIR SINE MIR -13 249 5 702 294 24 37 chr9 14993888 14994265 -127277179 + L1M4 LINE L1 3521 3892 -2254 2519 149 38 5 chr9 14994401 14994882 -127276562 + L1MA6 LINE L1 5219 5716 -584 631 191 0 8 chr9 14994882 14995011 -127276433 + L1MA6 LINE L1 6170 6299 -1 2519 149 38 5 chr9 14995011 14995025 -127276419 + L1MA6 LINE L1 5716 5728 -572 300 306 103 41 chr9 14995066 14995308 -127276136 + L1M4 LINE L1 4113 4369 -1777 267 222 156 11 chr9 14995486 14995576 -127275868 + L2 LINE L2 3195 3297 -16 339 306 66 73 chr9 14995597 14995777 -127275667 + L1M4 LINE L1 4748 4927 -1219 2366 77 0 17 chr9 14995777 14996077 -127275367 + AluY SINE Alu 1 295 -16 339 306 66 73 chr9 14996077 14996184 -127275260 + L1M4 LINE L1 4927 5033 -1113 293 274 122 43 chr9 14997088 14997252 -127274192 + MIR SINE MIR 7 183 -79 234 281 135 0 chr9 14998208 14998304 -127273140 - L2 LINE L2 0 3313 3205 407 303 61 40 chr9 14998605 14998803 -127272641 - MIR SINE MIR -18 244 43 462 360 32 28 chr9 14999445 14999698 -127271746 + MIR SINE MIR 8 261 -1 398 223 39 10 chr9 15001928 15002031 -127269413 - MER58 DNA MER1_type -57 284 179 753 267 63 10 chr9 15002081 15002384 -127269060 - L1ME LINE L1 -297 5824 5506 223 280 70 108 chr9 15003573 15003759 -127267685 + L2 LINE L2 2699 2877 -437 411 128 0 51 chr9 15003861 15003939 -127267505 + L1MC2 LINE L1 6247 6320 -24 259 254 17 0 chr9 15004361 15004420 -127267024 - MIR SINE MIR -2 260 201 681 223 137 25 chr9 15004741 15004938 -127266506 + MIR SINE MIR 23 241 -21 2016 134 10 22 chr9 15005397 15005710 -127265734 - AluSc SINE Alu 0 309 1 615 219 152 19 chr9 15006061 15006317 -127265127 + MER102b DNA MER1_type 51 340 -1 240 299 39 0 chr9 15006643 15006720 -127264724 + MIR SINE MIR 109 188 -74 297 317 89 0 chr9 15007450 15007551 -127263893 + L2 LINE L2 3199 3308 -5 1023 171 0 43 chr9 15007638 15007814 -127263630 - AluJo SINE Alu -8 304 135 1553 181 0 55 chr9 15007814 15007976 -127263468 - AluJo SINE Alu -20 292 153 1902 140 42 3 chr9 15007976 15008261 -127263183 - AluSx SINE Alu -16 296 1 1553 181 0 55 chr9 15008261 15008407 -127263037 - AluJo SINE Alu -159 153 1 21 0 0 0 chr9 15008852 15008873 -127262571 + AT_rich Low_complexity Low_complexity 1 21 0 2011 125 29 0 chr9 15009383 15009663 -127261781 - AluSx SINE Alu -24 288 1 1253 260 108 39 chr9 15010112 15010323 -127261121 - MLT1G LTR MaLR -18 572 377 8588 104 16 41 chr9 15010323 15011643 -127259801 - HSMAR1 DNA Mariner 0 1287 1 1253 260 108 39 chr9 15011643 15011966 -127259478 - MLT1G LTR MaLR -213 377 1 396 306 73 8 chr9 15012280 15012528 -127258916 + L1ME4a LINE L1 5604 5867 -254 31 26 0 0 chr9 15012734 15012772 -127258672 + AT_rich Low_complexity Low_complexity 1 38 0 218 160 0 40 chr9 15012848 15012898 -127258546 + A-rich Low_complexity Low_complexity 3 50 0 1340 236 48 37 chr9 15013068 15013530 -127257914 + MLT1C LTR MaLR 1 467 0 44 0 0 0 chr9 15014109 15014153 -127257291 + AT_rich Low_complexity Low_complexity 1 44 0 2007 144 3 0 chr9 15014252 15014543 -127256901 - AluSx SINE Alu -13 299 8 319 247 20 25 chr9 15014603 15014793 -127256651 - L1ME LINE L1 -303 5818 5562 1245 212 89 9 chr9 15014883 15015199 -127256245 - MER58B DNA MER1_type 0 341 1 21 0 0 0 chr9 15016982 15017003 -127254441 + AT_rich Low_complexity Low_complexity 1 21 0 1623 170 71 14 chr9 15019303 15019585 -127251859 - AluJb SINE Alu -14 298 1 442 258 25 42 chr9 15019592 15019712 -127251732 - MER5A DNA MER1_type -11 178 61 7275 67 9 1 chr9 15019721 15021455 -127249989 - L1PA6 LINE L1 0 6154 4395 1053 155 0 6 chr9 15025200 15025361 -127246083 - AluSq SINE Alu -153 160 1 240 278 0 0 chr9 15025900 15025954 -127245490 + GA-rich Low_complexity Low_complexity 4 57 0 242 324 0 14 chr9 15026210 15026284 -127245160 - MER5B DNA MER1_type -80 98 26 325 296 111 25 chr9 15028475 15028654 -127242790 + MIR SINE MIR 41 234 -28 326 258 151 63 chr9 15030027 15030186 -127241258 + L2 LINE L2 3137 3309 -4 265 283 131 21 chr9 15030274 15030419 -127241025 - MIR SINE MIR -53 209 49 2499 161 11 36 chr9 15032211 15032683 -127238761 + MLT1C LTR MaLR 5 464 -3 295 267 59 59 chr9 15033252 15033439 -127238005 + LTR16A LTR ERVL 1 183 -267 1091 374 50 4 chr9 15033439 15034266 -127237178 - HERV16 LTR ERVL -776 4988 4124 318 296 70 0 chr9 15034291 15034406 -127237038 - HERV16 LTR ERVL -2020 3465 3343 395 282 34 0 chr9 15034591 15034708 -127236736 - HERV16 LTR ERVL -2496 3158 3038 1573 328 52 20 chr9 15035045 15036294 -127235150 - HERV16 LTR ERVL -2649 3005 1709 264 215 215 0 chr9 15036804 15036883 -127234561 - HERV16 LTR ERVL -3967 1029 934 1086 324 45 22 chr9 15037107 15037662 -127233782 - HERV16 LTR ERVL -4316 680 110 986 244 136 12 chr9 15037662 15037994 -127233450 - MLT1A2 LTR MaLR -1 373 1 1086 324 45 22 chr9 15037994 15038015 -127233429 - HERV16 LTR ERVL -4886 110 91 882 283 75 44 chr9 15038073 15038486 -127232958 - LTR16A LTR ERVL -8 442 17 240 273 0 30 chr9 15039969 15040035 -127231409 + L2 LINE L2 2230 2293 -1021 206 400 57 0 chr9 15040108 15040213 -127231231 + L2 LINE L2 2564 2674 -640 1468 107 0 0 chr9 15040297 15040484 -127230960 + AluY SINE Alu 1 187 -124 324 67 0 33 chr9 15040488 15040548 -127230896 + AluSp/q SINE Alu 246 303 0 1342 177 61 49 chr9 15040872 15041326 -127230118 + MLT2B3 LTR ERVL 1 554 0 306 0 0 0 chr9 15041341 15041375 -127230069 + (T)n Simple_repeat Simple_repeat 1 34 0 344 188 9 27 chr9 15044016 15044128 -127227316 + (TA)n Simple_repeat Simple_repeat 2 111 0 616 348 45 44 chr9 15044325 15044880 -127226564 + L2 LINE L2 2720 3276 -37 1946 142 0 3 chr9 15045329 15045617 -127225827 - AluSx SINE Alu -25 287 1 182 194 0 0 chr9 15045915 15045946 -127225498 + L2 LINE L2 3240 3270 -2 182 234 0 109 chr9 15046096 15046160 -127225284 - L3 LINE CR1 -124 1453 1397 323 301 83 19 chr9 15046728 15046884 -127224560 - MIR SINE MIR -6 256 91 198 0 0 0 chr9 15047619 15047641 -127223803 + (CA)n Simple_repeat Simple_repeat 1 22 0 289 261 9 18 chr9 15048764 15048875 -127222569 - L1ME2 LINE L1 -216 5948 5839 199 273 0 61 chr9 15050070 15050136 -127221308 - L2 LINE L2 -1 3271 3210 393 276 147 6 chr9 15051490 15051660 -127219784 - MIR SINE MIR -3 259 66 12528 136 40 40 chr9 15051963 15052487 -127218957 + Tigger1 DNA MER2_type 52 575 -1843 4804 109 18 20 chr9 15052487 15052814 -127218630 - L1MA2 LINE L1 -1 6303 5977 1315 120 65 5 chr9 15052814 15053031 -127218413 - MER30 DNA MER1_type 0 230 1 4804 109 18 20 chr9 15053031 15053489 -127217955 - L1MA2 LINE L1 -327 5977 5520 12528 136 40 40 chr9 15053489 15055123 -127216321 + Tigger1 DNA MER2_type 575 2211 -207 1532 146 0 0 chr9 15055123 15055336 -127216108 + AluSx SINE Alu 24 236 -76 12528 136 40 40 chr9 15055336 15055544 -127215900 + Tigger1 DNA MER2_type 2211 2418 0 391 300 31 86 chr9 15056529 15056819 -127214625 - L1ME4a LINE L1 -214 5907 5634 1878 152 44 0 chr9 15056893 15057189 -127214255 - AluSx SINE Alu -3 309 1 230 316 0 21 chr9 15060144 15060239 -127211205 + GA-rich Low_complexity Low_complexity 6 98 0 378 0 0 0 chr9 15060410 15060452 -127210992 + (CA)n Simple_repeat Simple_repeat 1 42 0 910 179 112 45 chr9 15060817 15061040 -127210404 - MER8 DNA MER2_type 0 239 2 212 364 0 0 chr9 15061509 15061575 -127209869 - MIR SINE MIR -67 141 76 565 200 7 22 chr9 15061683 15061818 -127209626 + L1MB5 LINE L1 6041 6173 -1 198 294 0 0 chr9 15062175 15062226 -127209218 + L2 LINE L2 3250 3300 -13 877 182 21 74 chr9 15062607 15062730 -127208714 - L1MB1 LINE L1 -242 5926 5821 1771 167 3 33 chr9 15062730 15063036 -127208408 + AluSx SINE Alu 1 297 -15 877 182 21 74 chr9 15063036 15063154 -127208290 - L1MB1 LINE L1 -347 5821 5698 1324 139 0 18 chr9 15063168 15063391 -127208053 + THE1B LTR MaLR 1 219 -145 15409 133 20 57 chr9 15063410 15066451 -127204993 + L1PA7 LINE L1 12 2939 -3207 7040 39 15 1 chr9 15066451 15067312 -127204132 + L1PA4 LINE L1 5274 6155 0 * 18030 71 11 7 chr9 15067305 15070537 -127200907 + L1PA7 LINE L1 2913 6153 -1 777 114 18 1 chr9 15070645 15070780 -127200664 + THE1A LTR MaLR 220 355 0 1468 217 50 29 chr9 15071148 15071591 -127199853 + MER63C DNA MER1_type 1 452 -478 548 173 62 6 chr9 15071609 15071771 -127199673 + MER63C DNA MER1_type 675 845 -85 475 326 88 19 chr9 15072255 15072574 -127198870 + L1M4 LINE L1 3604 3944 -2202 785 130 12 80 chr9 15072704 15072866 -127198578 + MER5A DNA MER1_type 3 153 -36 1642 213 27 12 chr9 15072867 15073275 -127198169 - MER63C DNA MER1_type 0 930 517 794 274 42 9 chr9 15073275 15073490 -127197954 - MER58A DNA MER1_type -2 222 1 * 1081 234 54 24 chr9 15073490 15073847 -127197597 - MER63C DNA MER1_type -409 521 154 455 311 73 43 chr9 15073876 15074271 -127197173 + L1M4 LINE L1 4142 4548 -1598 505 301 96 50 chr9 15074707 15075325 -127196119 - L1MC4a LINE L1 -1833 5975 5330 413 339 94 29 chr9 15075830 15076213 -127195231 - L2 LINE L2 -259 3054 2653 417 294 54 20 chr9 15076548 15076779 -127194665 - MLT1J1 LTR MaLR -228 283 4 414 273 41 16 chr9 15076804 15076925 -127194519 - MIR SINE MIR -130 132 9 851 240 62 0 chr9 15077045 15077253 -127194191 + MER58A DNA MER1_type 4 224 0 1206 236 62 23 chr9 15079636 15080025 -127191419 - MER74B LTR ERVL -77 545 142 364 363 44 0 chr9 15080412 15080572 -127190872 + MIR SINE MIR 29 195 -67 180 263 165 23 chr9 15081688 15081821 -127189623 + L3 LINE CR1 1105 1256 -321 644 327 125 38 chr9 15085940 15086872 -127184572 + L2 LINE L2 2233 3272 0 1059 264 132 2 chr9 15087632 15088026 -127183418 - LTR16A1 LTR ERVL -12 445 1 2071 110 24 81 chr9 15090361 15090521 -127180923 + THE1B LTR MaLR 4 172 -192 2205 126 0 0 chr9 15090521 15090815 -127180629 - AluSp SINE Alu -14 299 6 2071 110 24 81 chr9 15090815 15091037 -127180407 + THE1B LTR MaLR 172 364 0 456 279 207 8 chr9 15091138 15091389 -127180055 - L1MC/D LINE L1 -2168 5640 5340 1977 203 68 0 chr9 15092131 15092530 -127178914 + MSTB LTR MaLR 1 426 0 8054 190 18 11 chr9 15092530 15094165 -127177279 + MSTB-int LTR MaLR 1 1646 -5 2211 182 65 2 chr9 15094170 15094571 -127176873 + MSTB LTR MaLR 1 426 0 457 174 20 20 chr9 15095546 15095644 -127175800 - MLT1A1 LTR MaLR -267 98 1 562 301 76 10 chr9 15095985 15096274 -127175170 + HAL1 LINE L1 13 320 -2187 408 213 19 38 chr9 15096822 15096982 -127174462 - L1MC4 LINE L1 -195 7847 7691 226 254 261 8 chr9 15097477 15097611 -127173833 + MIR SINE MIR 48 215 -47 332 313 67 17 chr9 15098411 15098564 -127172880 - L1MEd LINE L1 -3324 2805 2661 1148 247 0 8 chr9 15098564 15098803 -127172641 + MER8 DNA MER2_type 1 237 -2 332 313 67 17 chr9 15098803 15098994 -127172450 - L1MEd LINE L1 -3468 2661 2444 233 331 38 12 chr9 15099644 15099804 -127171640 - HAL1 LINE L1 -937 1570 1407 1795 290 91 32 chr9 15099809 15100942 -127170502 - L1MEd LINE L1 -4862 1257 58 6800 129 52 5 chr9 15101426 15102602 -127168842 - Tigger3b DNA MER2_type 0 1231 1 1135 154 10 5 chr9 15102767 15102968 -127168476 + L1PA16 LINE L1 5949 6150 -16 1567 206 7 17 chr9 15103032 15103324 -127168120 + AluJo SINE Alu 1 289 -23 644 348 165 30 chr9 15103822 15104694 -127166750 + L2 LINE L2 1768 2757 -557 250 301 12 24 chr9 15104719 15104812 -127166632 - MER5A DNA MER1_type -73 116 14 265 392 97 17 chr9 15104963 15105139 -127166305 + L2 LINE L2 2902 3091 -181 192 336 42 17 chr9 15105351 15105470 -127165974 + MIR3 SINE MIR 46 167 -41 686 210 51 27 chr9 15105487 15105744 -127165700 - L1MC5 LINE L1 -34 7927 7665 2092 164 11 14 chr9 15105864 15106229 -127165215 + THE1B LTR MaLR 1 364 0 10354 106 29 29 chr9 15106229 15107808 -127163636 + THE1B-int LTR MaLR 1 1579 -1 1940 137 84 23 chr9 15107809 15108152 -127163292 + THE1B LTR MaLR 1 364 0 247 131 66 49 chr9 15108397 15108458 -127162986 + MLT1I LTR MaLR 316 377 -32 3221 238 40 23 chr9 15108560 15109559 -127161885 - L1ME2 LINE L1 -12 6152 5134 262 197 70 14 chr9 15109553 15109624 -127161820 - L1MD1 LINE L1 -94 6148 6074 * 24 53 0 0 chr9 15109631 15109669 -127161775 + AT_rich Low_complexity Low_complexity 1 38 0 1973 247 115 37 chr9 15109773 15111249 -127160195 + L1ME1 LINE L1 4577 6161 -5 478 190 10 20 chr9 15111942 15112042 -127159402 - MIR SINE MIR -70 192 94 2681 10 3 0 chr9 15112649 15112944 -127158500 + AluY SINE Alu 1 296 -15 342 223 18 9 chr9 15113161 15113273 -127158171 + GA-rich Low_complexity Low_complexity 3 115 0 277 316 59 37 chr9 15113362 15113498 -127157946 + MIR SINE MIR 78 216 -46 198 0 0 0 chr9 15114710 15114732 -127156712 + (CAT)n Simple_repeat Simple_repeat 2 23 0 426 314 38 35 chr9 15115102 15115310 -127156134 + MIR SINE MIR 5 216 -46 2046 138 21 13 chr9 15115315 15115698 -127155746 - Charlie5 DNA MER1_type 0 2619 2234 682 158 0 0 chr9 15115702 15115816 -127155628 - MER3 DNA MER1_type -41 168 55 233 213 21 0 chr9 15115818 15115865 -127155579 + MIR SINE MIR 203 250 -12 5633 163 71 17 chr9 15116274 15118290 -127153154 + L1MA7 LINE L1 4133 6258 -33 1407 189 84 0 chr9 15120559 15120834 -127150610 - LTR40a LTR ERVL 0 519 222 25 51 0 0 chr9 15121058 15121097 -127150347 + AT_rich Low_complexity Low_complexity 1 39 0 388 313 110 57 chr9 15121167 15121394 -127150050 - MIR SINE MIR -23 239 1 2717 107 8 0 chr9 15121677 15122062 -127149382 + L1PA15 LINE L1 5773 6160 -5 2655 22 0 22 chr9 15123394 15123712 -127147732 + AluY SINE Alu 1 311 0 309 313 156 36 chr9 15124071 15124263 -127147181 - MIR SINE MIR -46 216 2 567 296 60 28 chr9 15125200 15125416 -127146028 - MIR SINE MIR -11 251 29 336 230 55 145 chr9 15126731 15126931 -127144513 - MIR SINE MIR 0 262 81 228 288 68 83 chr9 15127099 15127231 -127144213 - L2 LINE L2 0 3272 3143 303 294 184 28 chr9 15127443 15127661 -127143783 - MIR SINE MIR -5 257 6 1821 209 9 4 chr9 15128001 15128349 -127143095 - MLT1A1 LTR MaLR 0 365 1 229 338 0 0 chr9 15129374 15129451 -127141993 - MIR SINE MIR -6 256 180 228 325 63 8 chr9 15129869 15129995 -127141449 + MER5A DNA MER1_type 13 145 -44 1259 276 147 58 chr9 15130319 15131487 -127139957 - HAL1 LINE L1 -6 2501 1230 280 304 95 48 chr9 15131831 15131999 -127139445 + MER5B DNA MER1_type 2 177 -1 246 241 277 27 chr9 15134008 15134120 -127137324 - MIR SINE MIR -70 192 53 22 35 0 0 chr9 15134245 15134274 -127137170 + AT_rich Low_complexity Low_complexity 1 29 0 201 214 0 36 chr9 15135583 15135639 -127135805 + (CATATA)n Simple_repeat Simple_repeat 1 54 0 342 303 76 14 chr9 15135740 15135885 -127135559 - MIR SINE MIR -61 201 48 2304 65 3 3 chr9 15137287 15137580 -127133864 + AluY SINE Alu 19 311 0 293 170 0 0 chr9 15137610 15137663 -127133781 - L1MB7 LINE L1 -65 6119 6067 533 239 83 61 chr9 15137666 15137930 -127133514 + MER113 DNA MER1_type? 131 400 -121 441 258 148 105 chr9 15138180 15138409 -127133035 + MLT1G LTR MaLR 348 581 -9 439 281 7 22 chr9 15138426 15138561 -127132883 - MER94 DNA DNA 0 134 2 22 0 0 0 chr9 15138754 15138776 -127132668 + AT_rich Low_complexity Low_complexity 1 22 0 780 239 53 5 chr9 15139044 15139232 -127132212 - MIR SINE MIR -50 212 16 7301 173 55 20 chr9 15139644 15142140 -127129304 - L1MA5 LINE L1 0 7362 4779 2391 159 14 42 chr9 15142140 15142529 -127128915 - MSTC LTR MaLR -2 426 49 1688 167 35 0 chr9 15142529 15142816 -127128628 + AluJb SINE Alu 1 297 -15 2391 159 14 42 chr9 15142816 15142860 -127128584 - MSTC LTR MaLR -379 49 5 2327 203 28 4 chr9 15142864 15143371 -127128073 - L1MA5 LINE L1 -2423 4785 4267 854 192 13 6 chr9 15143417 15143573 -127127871 + Tigger1 DNA MER2_type 1 157 -2261 * 1100 143 64 0 chr9 15143562 15143765 -127127679 + Tigger1 DNA MER2_type 2202 2417 -1 4104 189 33 42 chr9 15143767 15144652 -127126792 - L1MA5 LINE L1 -2988 4220 3347 2315 48 48 10 chr9 15144652 15144946 -127126498 - AluY SINE Alu -4 307 3 4104 189 33 42 chr9 15144946 15145257 -127126187 - L1MA5 LINE L1 -3861 3347 3035 3520 173 80 1 chr9 15145267 15145932 -127125512 - Tigger1 DNA MER2_type 0 2418 1702 1274 142 28 5 chr9 15145942 15146154 -127125290 - Tigger1 DNA MER2_type -2178 240 24 2700 175 55 18 chr9 15146159 15146354 -127125090 - L1MA5 LINE L1 -4186 3023 2837 1812 165 7 16 chr9 15146354 15146663 -127124781 - AluJb SINE Alu -4 308 3 2700 175 55 18 chr9 15146663 15147015 -127124429 - L1MA5 LINE L1 -4372 2837 2456 1845 283 109 41 chr9 15147009 15148005 -127123439 - L1MA5 LINE L1 -5525 1684 1 * 1990 128 3 7 chr9 15148095 15148383 -127123061 + AluSx SINE Alu 1 287 -25 655 245 131 38 chr9 15148841 15149078 -127122366 - MIR SINE MIR 0 262 4 21 36 0 0 chr9 15149712 15149740 -127121704 + AT_rich Low_complexity Low_complexity 1 28 0 440 257 92 18 chr9 15152397 15152562 -127118882 - MIR SINE MIR -44 218 47 3984 87 0 9 chr9 15152717 15153268 -127118176 + L1PA7 LINE L1 5609 6154 0 362 360 74 0 chr9 15153949 15154124 -127117320 + MIR SINE MIR 1 188 -74 467 304 91 42 chr9 15154158 15154453 -127116991 + MLT1J LTR MaLR 17 297 -149 531 304 90 36 chr9 15154760 15155148 -127116296 + MLT1J2 LTR MaLR 17 425 -25 11912 201 51 24 chr9 15155902 15160618 -127110826 + L1M3 LINE L1 17 4900 -1519 7268 47 0 1 chr9 15160618 15161547 -127109897 + L1PA6 LINE L1 5222 6149 -5 11912 201 51 24 chr9 15161547 15162346 -127109098 + L1M3 LINE L1 4900 5676 -743 869 145 8 0 chr9 15162347 15162471 -127108973 + FLAM_C SINE Alu 1 125 -18 31 0 0 0 chr9 15162471 15162502 -127108942 + AT_rich Low_complexity Low_complexity 1 31 0 196 286 214 0 chr9 15162654 15162766 -127108678 - MIR SINE MIR 0 262 127 316 311 54 24 chr9 15162779 15162946 -127108498 - MIR SINE MIR -60 202 31 2749 216 10 0 chr9 15163717 15164336 -127107108 - L1P LINE L1 -3048 3098 2474 2157 129 3 0 chr9 15164401 15164712 -127106732 + AluSx SINE Alu 1 312 0 185 326 22 45 chr9 15165098 15165187 -127106257 - L2 LINE L2 0 3272 3186 251 285 38 111 chr9 15165621 15165856 -127105588 - MIR SINE MIR -28 234 17 5562 122 20 2 chr9 15166264 15167109 -127104335 + L1PA15 LINE L1 5294 6153 -12 622 298 57 20 chr9 15171589 15171837 -127099607 - MIR SINE MIR -1 261 5 547 276 138 0 chr9 15173078 15173259 -127098185 - MIR SINE MIR 0 262 57 1570 125 153 3 chr9 15173775 15174070 -127097374 + MER44D DNA MER2_type 1 609 0 938 209 6 11 chr9 15174166 15174536 -127096908 + GA-rich Low_complexity Low_complexity 1 368 0 535 264 0 0 chr9 15175186 15175307 -127096137 - MER94 DNA DNA -10 124 4 322 275 69 15 chr9 15175379 15175510 -127095934 + MIR SINE MIR 75 212 -50 204 398 79 45 chr9 15177093 15177513 -127093931 + L2 LINE L2 2831 3264 -8 202 300 38 25 chr9 15177540 15177620 -127093824 + MIR3 SINE MIR 9 89 -119 2234 248 45 45 chr9 15177629 15178477 -127092967 + L1M4 LINE L1 3356 4203 -1943 7114 50 7 0 chr9 15178637 15180212 -127091232 + L1PA5 LINE L1 4568 6148 -6 418 204 21 175 chr9 15180692 15180932 -127090512 - MIR SINE MIR -6 256 54 332 272 15 92 chr9 15180953 15181159 -127090285 + L1MC5 LINE L1 7736 7925 -36 1801 57 0 4 chr9 15181777 15182004 -127089440 - AluY SINE Alu 0 311 86 235 251 166 91 chr9 15182110 15182297 -127089147 + MIR SINE MIR 28 228 -34 2042 199 18 0 chr9 15183848 15184304 -127087140 - MLT2B1 LTR ERVL 0 520 5 296 397 55 0 chr9 15184388 15184534 -127086910 + MER91A DNA MER1_type 21 174 -22 489 152 45 15 chr9 15185014 15185216 -127086228 - MER58B DNA MER1_type 0 341 72 3554 123 53 10 chr9 15185226 15185555 -127085889 - L1PB4 LINE L1 -20 6136 5770 473 31 0 16 chr9 15185555 15185619 -127085825 + (TG)n Simple_repeat Simple_repeat 2 64 0 3554 123 53 10 chr9 15185619 15185873 -127085571 - L1PB4 LINE L1 -386 5770 5528 245 163 47 0 chr9 15185876 15185919 -127085525 - MER58B DNA MER1_type -253 88 44 604 270 72 14 chr9 15186207 15186506 -127084938 + MLT1J2 LTR MaLR 1 332 -118 206 163 61 0 chr9 15186975 15187024 -127084420 - L3 LINE CR1 -334 1243 1192 437 364 61 4 chr9 15187476 15187707 -127083737 + MIR SINE MIR 19 262 0 * 439 253 101 13 chr9 15187672 15187830 -127083614 - MIR SINE MIR -79 183 12 636 221 101 40 chr9 15188451 15188627 -127082817 + MIR SINE MIR 31 222 -40 2199 119 0 0 chr9 15188627 15188929 -127082515 - AluSq SINE Alu -11 302 1 636 221 101 40 chr9 15188929 15188951 -127082493 + MIR SINE MIR 222 241 -21 207 127 0 56 chr9 15189560 15189631 -127081813 + (TTA)n Simple_repeat Simple_repeat 1 67 0 180 0 0 0 chr9 15190039 15190059 -127081385 + (A)n Simple_repeat Simple_repeat 1 20 0 359 377 41 0 chr9 15191702 15191848 -127079596 + L2 LINE L2 3121 3272 0 23 0 0 0 chr9 15193708 15193731 -127077713 + AT_rich Low_complexity Low_complexity 1 23 0 234 281 78 0 chr9 15194925 15194989 -127076455 + MIR3 SINE MIR 114 182 -26 1436 105 0 0 chr9 15195337 15195528 -127075916 - LOR1a LTR ERV1 0 497 307 288 307 11 0 chr9 15195985 15196073 -127075371 - MIR3 SINE MIR 0 208 120 28 61 0 0 chr9 15196497 15196546 -127074898 + AT_rich Low_complexity Low_complexity 1 49 0 2247 68 16 48 chr9 15196606 15196916 -127074528 - AluY SINE Alu -11 300 1 22 0 0 0 chr9 15197504 15197526 -127073918 + AT_rich Low_complexity Low_complexity 1 22 0 339 204 91 53 chr9 15198265 15198397 -127073047 - MIR SINE MIR -15 247 111 2079 128 0 0 chr9 15198435 15198756 -127072688 - AluSx SINE Alu 0 324 4 257 273 99 16 chr9 15199289 15199386 -127072058 - MIR SINE MIR -3 259 149 1731 164 55 6 chr9 15199386 15199716 -127071728 - MER7A DNA MER2_type -2 344 1 257 273 99 16 chr9 15199716 15199739 -127071705 - MIR SINE MIR -113 149 129 269 83 0 0 chr9 15200530 15200566 -127070878 + U2 snRNA snRNA 1 36 -152 2628 201 93 70 chr9 15200584 15201463 -127069981 + L1MC4 LINE L1 7058 7956 -86 333 182 0 65 chr9 15202353 15202430 -127069014 - L1ME4a LINE L1 -76 6045 5974 219 139 0 0 chr9 15203165 15203201 -127068243 + (CA)n Simple_repeat Simple_repeat 2 37 0 633 248 50 0 chr9 15203772 15203913 -127067531 - MER45A DNA AcHobo -30 148 1 366 218 73 17 chr9 15205458 15205637 -127065807 + MER113 DNA MER1_type? 7 195 -326 1288 54 0 0 chr9 15207583 15207750 -127063694 - L1P LINE L1 -5358 788 622 238 139 0 0 chr9 15207750 15207786 -127063658 + HSMAR1 DNA Mariner 417 452 -835 337 330 126 41 chr9 15208240 15208906 -127062538 + L2 LINE L2 2499 3306 -7 * 777 265 120 8 chr9 15208881 15209115 -127062329 - MIR SINE MIR 0 262 3 205 205 0 0 chr9 15209117 15209156 -127062288 + L2 LINE L2 3272 3310 -3 446 287 0 0 chr9 15210048 15210149 -127061295 - MER5A DNA MER1_type -80 109 9 21 0 0 0 chr9 15210539 15210560 -127060884 + AT_rich Low_complexity Low_complexity 1 21 0 414 0 0 0 chr9 15211112 15211158 -127060286 + (TG)n Simple_repeat Simple_repeat 1 46 0 756 284 22 18 chr9 15212623 15212852 -127058592 - MIR SINE MIR -17 245 16 3496 152 2 2 chr9 15214842 15215390 -127056054 + MER44D DNA MER2_type 3 605 0 600 257 26 0 chr9 15216290 15216442 -127055002 + MIR SINE MIR 95 250 -12 429 333 107 14 chr9 15216864 15217218 -127054226 - L1ME4a LINE L1 -83 6038 5652 311 302 116 31 chr9 15217806 15218064 -127053380 - L1M4 LINE L1 -3722 2424 2145 1076 195 116 30 chr9 15218084 15218454 -127052990 - LTR37A LTR ERV1 -21 405 4 549 342 82 57 chr9 15218762 15219582 -127051862 - HAL1b LINE L1 -579 1593 26 261 272 144 45 chr9 15219970 15220172 -127051272 + HAL1 LINE L1 319 540 -1967 2607 249 116 39 chr9 15220290 15221632 -127049812 + HAL1 LINE L1 756 2205 -302 1868 175 25 11 chr9 15221632 15221992 -127049452 - MLT1A1 LTR MaLR 0 365 1 31 58 0 0 chr9 15222178 15222230 -127049214 + AT_rich Low_complexity Low_complexity 1 52 0 499 110 0 0 chr9 15223349 15223422 -127048022 + Alu SINE Alu 227 299 -11 654 300 25 17 chr9 15223551 15223791 -127047653 - MLT1J LTR MaLR -159 352 111 1233 225 67 59 chr9 15227314 15227815 -127043629 + MER39 LTR ERV1 1 686 -21 730 253 29 57 chr9 15228989 15229270 -127042174 + Charlie8 DNA MER1_type 1 273 -2144 1490 203 32 11 chr9 15229775 15230056 -127041388 + AluJo SINE Alu 1 287 -25 300 191 90 22 chr9 15230064 15230153 -127041291 + L1MC4 LINE L1 6608 6702 -1340 536 128 34 28 chr9 15230162 15230341 -127041103 + (TA)n Simple_repeat Simple_repeat 1 180 0 192 40 0 0 chr9 15230339 15230364 -127041080 + (CCCTAA)n Simple_repeat Simple_repeat 4 28 0 * 347 192 87 19 chr9 15230375 15230479 -127040965 + L1MCa LINE L1 1995 2105 -4321 203 227 15 15 chr9 15230479 15230545 -127040899 + (TA)n Simple_repeat Simple_repeat 1 66 0 198 287 157 13 chr9 15231081 15231173 -127040271 - MIR SINE MIR -61 147 60 220 281 146 0 chr9 15231334 15231416 -127040028 + MIR SINE MIR 107 200 -62 908 247 28 0 chr9 15231499 15231677 -127039767 - MER5A DNA MER1_type 0 189 7 200 300 0 0 chr9 15232315 15232365 -127039079 + (TG)n Simple_repeat Simple_repeat 1 50 0 243 0 0 0 chr9 15232891 15232918 -127038526 + (A)n Simple_repeat Simple_repeat 1 27 0 22 0 0 0 chr9 15233078 15233100 -127038344 + AT_rich Low_complexity Low_complexity 1 22 0 807 223 43 11 chr9 15233167 15233355 -127038089 - MIR SINE MIR -38 224 31 185 323 46 0 chr9 15234791 15234856 -127036588 - L2 LINE L2 -1 3312 3245 2176 79 52 0 chr9 15235869 15236159 -127035285 + AluSp SINE Alu 1 305 -8 413 229 76 0 chr9 15236261 15236366 -127035078 + MER94 DNA DNA 1 113 -21 2193 97 0 0 chr9 15236368 15236679 -127034765 + AluSq SINE Alu 1 311 0 367 295 180 0 chr9 15236737 15236876 -127034568 + MIR SINE MIR 65 228 -34 241 318 0 0 chr9 15238289 15238355 -127033089 - MIR SINE MIR -10 252 187 243 164 66 33 chr9 15238715 15238776 -127032668 - MIR SINE MIR -115 147 85 280 312 20 7 chr9 15238823 15238966 -127032478 + MER20B DNA MER1_type 27 174 -45 232 284 110 37 chr9 15239965 15240128 -127031316 + MIR SINE MIR 15 192 -65 239 197 15 15 chr9 15240499 15240565 -127030879 + (GTTTG)n Simple_repeat Simple_repeat 2 67 0 682 294 76 5 chr9 15240716 15240927 -127030517 + MIR SINE MIR 37 262 0 217 296 0 0 chr9 15240939 15240993 -127030451 - L2 LINE L2 -9 3263 3210 354 287 0 0 chr9 15241673 15241760 -127029684 + L2 LINE L2 3227 3313 0 308 372 29 17 chr9 15241919 15242091 -127029353 + MIR3 SINE MIR 6 179 -29 1626 220 78 31 chr9 15242295 15242809 -127028635 - MLT1F LTR MaLR -4 538 1 1668 232 42 20 chr9 15243215 15243663 -127027781 + MER70A LTR ERVL 15 472 0 191 366 14 0 chr9 15243821 15243892 -127027552 + MIR SINE MIR 69 140 -122 749 307 71 24 chr9 15244153 15244534 -127026910 - MLT1I LTR MaLR -10 399 1 519 276 110 12 chr9 15245062 15245225 -127026219 + MIR3 SINE MIR 24 202 -6 376 225 90 11 chr9 15245972 15246061 -127025383 + MIR SINE MIR 85 180 -82 2191 117 0 3 chr9 15246453 15246753 -127024691 - AluSx SINE Alu -11 301 3 198 91 0 0 chr9 15247229 15247262 -127024182 + (T)n Simple_repeat Simple_repeat 1 33 0 304 283 81 0 chr9 15247302 15247401 -127024043 - MIR3 SINE MIR -1 207 101 205 349 36 0 chr9 15247488 15247571 -127023873 + MIR3 SINE MIR 76 161 -47 180 0 0 0 chr9 15249237 15249257 -127022187 + (T)n Simple_repeat Simple_repeat 1 20 0 192 247 12 74 chr9 15250784 15250865 -127020579 + MIR SINE MIR 5 80 -182 347 333 9 9 chr9 15251368 15251482 -127019962 + MIR3 SINE MIR 76 189 -19 286 56 19 37 chr9 15251819 15251873 -127019571 + (TTTG)n Simple_repeat Simple_repeat 4 56 0 2131 92 7 0 chr9 15251876 15252148 -127019296 - AluSx SINE Alu -37 275 2 336 309 41 24 chr9 15252824 15252947 -127018497 + MIR SINE MIR 21 145 -117 188 250 0 59 chr9 15254110 15254178 -127017266 - MIR SINE MIR 0 262 199 1115 150 6 0 chr9 15254274 15254441 -127017003 - FRAM SINE Alu -14 162 1 1673 162 10 32 chr9 15254446 15254754 -127016690 - AluJb SINE Alu -11 301 1 315 255 99 21 chr9 15254914 15255055 -127016389 + L1ME4a LINE L1 5970 6121 0 447 280 155 20 chr9 15255245 15255445 -127015999 + L3b LINE CR1 1126 1352 -231 28 0 0 0 chr9 15256038 15256066 -127015378 + AT_rich Low_complexity Low_complexity 1 28 0 332 318 57 17 chr9 15256151 15256329 -127015115 - MIR SINE MIR -64 144 6 331 300 69 8 chr9 15256783 15256913 -127014531 - MIR SINE MIR -47 215 78 577 240 111 41 chr9 15256929 15257200 -127014244 + MLT1H LTR MaLR 18 307 -242 1788 25 0 0 chr9 15257399 15257600 -127013844 - L1P2 LINE L1 -473 5681 5481 7951 30 27 0 chr9 15257600 15258572 -127012872 - L1PA4 LINE L1 -1 6154 5176 277 356 0 0 chr9 15260270 15260385 -127011059 + GA-rich Low_complexity Low_complexity 2 116 0 396 269 23 15 chr9 15261072 15261202 -127010242 + MLT1J LTR MaLR 53 183 -328 333 365 74 17 chr9 15261245 15261475 -127009969 + MLT1J LTR MaLR 246 488 -23 348 243 6 127 chr9 15261949 15262122 -127009322 - L2 LINE L2 -50 3263 3112 220 233 0 0 chr9 15262459 15262502 -127008942 - MIR SINE MIR -4 258 216 2318 91 0 3 chr9 15262573 15262871 -127008573 - AluY SINE Alu -14 297 1 348 24 0 0 chr9 15262939 15262980 -127008464 + (TG)n Simple_repeat Simple_repeat 2 42 0 227 366 0 10 chr9 15263777 15263878 -127007566 - MIR SINE MIR -155 107 8 399 41 0 0 chr9 15263885 15263934 -127007510 + (CA)n Simple_repeat Simple_repeat 2 50 0 204 40 0 0 chr9 15263933 15263958 -127007486 + (GA)n Simple_repeat Simple_repeat 2 26 0 * 824 279 108 22 chr9 15264029 15264505 -127006939 + MLT1K LTR MaLR 10 556 -32 282 143 0 0 chr9 15264857 15264920 -127006524 + (TC)n Simple_repeat Simple_repeat 2 64 0 288 0 0 0 chr9 15264920 15264952 -127006492 + (CA)n Simple_repeat Simple_repeat 1 32 0 318 50 0 0 chr9 15265354 15265394 -127006050 + (CA)n Simple_repeat Simple_repeat 2 41 0 302 265 90 78 chr9 15267073 15267239 -127004205 - MIR3 SINE MIR -25 183 16 6142 120 7 19 chr9 15267254 15268136 -127003308 - HSMAR1 DNA Mariner 0 1287 417 39515 36 3 4 chr9 15268136 15273675 -126997769 + L1PA4 LINE L1 622 6155 0 2947 95 11 32 chr9 15273680 15273783 -126997661 - HSMAR1 DNA Mariner -854 433 329 1995 161 0 0 chr9 15273783 15274087 -126997357 - AluSx SINE Alu -8 304 1 2947 95 11 32 chr9 15274087 15274416 -126997028 - HSMAR1 DNA Mariner -958 329 10 279 337 43 27 chr9 15275133 15275320 -126996124 + MLT1J2 LTR MaLR 261 450 0 989 271 82 38 chr9 15275328 15275745 -126995699 - LTR16A LTR ERVL 0 450 16 290 340 14 14 chr9 15275884 15276031 -126995413 - HERVL LTR ERVL -327 5327 5181 687 347 57 15 chr9 15276180 15276772 -126994672 - HERVL LTR ERVL -498 4987 4500 1288 351 45 18 chr9 15276832 15277620 -126993824 - HERVL LTR ERVL -1283 4371 3613 323 337 127 39 chr9 15277619 15277824 -126993620 - HERV16 LTR ERVL -3189 1807 1585 * 361 121 17 0 chr9 15277863 15277921 -126993523 - LTR10B LTR ERV1 -2 545 487 652 312 5 0 chr9 15278214 15278413 -126993031 - HERV16 LTR ERVL -3677 1319 1120 714 320 46 12 chr9 15278444 15278703 -126992741 - LTR16A LTR ERVL -122 328 61 332 328 110 69 chr9 15278792 15279155 -126992289 + L2 LINE L2 2895 3272 0 294 146 0 0 chr9 15280130 15280185 -126991259 + LTR1 LTR ERV1 8 62 -723 328 139 4 0 chr9 15280200 15280263 -126991181 - Alu SINE Alu -254 48 2 3909 124 45 51 chr9 15280451 15281177 -126990267 + LTR1 LTR ERV1 63 784 -1 369 275 116 7 chr9 15281305 15281443 -126990001 + MIR SINE MIR 82 234 -28 442 269 31 0 chr9 15281643 15281773 -126989671 + MIR SINE MIR 97 230 -32 405 104 15 30 chr9 15282210 15282277 -126989167 + L1MC1 LINE L1 6263 6328 -5 198 248 85 85 chr9 15282431 15282560 -126988884 - MIR SINE MIR -50 212 84 819 291 29 0 chr9 15283319 15283563 -126987881 - MIR SINE MIR 0 262 12 879 134 0 0 chr9 15283567 15283709 -126987735 + (TTCC)n Simple_repeat Simple_repeat 3 144 0 1521 172 12 68 chr9 15283711 15284037 -126987407 - AluJb SINE Alu 0 312 5 495 271 16 8 chr9 15285559 15285688 -126985756 - MER94 DNA DNA 0 134 5 435 323 48 56 chr9 15285922 15286173 -126985271 - L2 LINE L2 0 3272 3024 350 340 96 10 chr9 15286258 15286467 -126984977 - L2 LINE L2 -428 2886 2660 234 269 29 39 chr9 15286611 15286715 -126984729 + MIR SINE MIR 81 183 -79 451 321 104 17 chr9 15287011 15287251 -126984193 - MIR SINE MIR 0 262 2 228 205 29 70 chr9 15287882 15288053 -126983391 + (TTTAA)n Simple_repeat Simple_repeat 1 164 0 * 229 125 14 69 chr9 15287988 15288060 -126983384 + (TTAAA)n Simple_repeat Simple_repeat 3 70 0 1589 266 109 56 chr9 15288068 15289019 -126982425 + L2 LINE L2 2235 3255 -58 1433 205 57 10 chr9 15289053 15289170 -126982274 + AluJb SINE Alu 1 111 -201 1043 75 0 7 chr9 15289170 15289317 -126982127 + (GAAA)n Simple_repeat Simple_repeat 3 148 0 1433 205 57 10 chr9 15289317 15289497 -126981947 + AluJb SINE Alu 111 312 0 302 287 19 19 chr9 15290407 15290515 -126980929 + Charlie1 DNA MER1_type 2355 2462 -299 39 38 0 0 chr9 15290599 15290652 -126980792 + AT_rich Low_complexity Low_complexity 1 53 0 261 320 95 35 chr9 15290826 15291026 -126980418 - MIR SINE MIR -1 261 50 808 134 0 0 chr9 15291637 15291756 -126979688 - AluSg/x SINE Alu -4 306 188 224 271 176 0 chr9 15291879 15291964 -126979480 + MIR SINE MIR 106 205 -57 652 319 32 39 chr9 15291985 15292199 -126979245 + L2 LINE L2 2239 2452 -862 4002 138 3 0 chr9 15292199 15292771 -126978673 - L1PA16 LINE L1 -9 6157 5584 652 319 32 39 chr9 15292771 15292866 -126978578 + L2 LINE L2 2452 2546 -768 2025 137 3 0 chr9 15292877 15293169 -126978275 + AluSx SINE Alu 1 293 -19 896 295 120 33 chr9 15293176 15293750 -126977694 + L2 LINE L2 2696 3309 -4 1147 291 65 10 chr9 15293986 15294399 -126977045 + L1MC4a LINE L1 5496 5931 -1877 838 316 97 42 chr9 15295465 15296016 -126975428 + L2 LINE L2 2174 2792 -480 1763 185 0 10 chr9 15296016 15296314 -126975130 - AluJb SINE Alu -14 298 4 838 316 97 42 chr9 15296314 15296618 -126974826 + L2 LINE L2 2792 3078 -194 219 301 48 39 chr9 15296863 15296966 -126974478 + MIR SINE MIR 60 163 -99 326 388 8 0 chr9 15298773 15298894 -126972550 + L2 LINE L2 3134 3255 -17 741 23 0 0 chr9 15298895 15298982 -126972462 + (GGAA)n Simple_repeat Simple_repeat 2 88 0 283 362 26 63 chr9 15299305 15299573 -126971871 - L2 LINE L2 -191 3081 2824 332 301 123 25 chr9 15299655 15299858 -126971586 + MIR SINE MIR 11 233 -29 252 302 145 19 chr9 15301098 15301257 -126970187 + MIR SINE MIR 72 250 -12 23 0 0 0 chr9 15301912 15301935 -126969509 + AT_rich Low_complexity Low_complexity 1 23 0 403 281 83 69 chr9 15301941 15302304 -126969140 + L1ME4a LINE L1 5462 5829 -292 2271 94 0 7 chr9 15302304 15302601 -126968843 + AluSg SINE Alu 1 295 -15 244 236 0 14 chr9 15302669 15302741 -126968703 + L1ME4a LINE L1 6049 6119 -2 24 32 0 0 chr9 15303186 15303217 -126968227 + GC_rich Low_complexity Low_complexity 1 31 0 941 196 17 0 chr9 15305005 15305178 -126966266 + MER5B DNA MER1_type 1 176 -2 206 388 66 8 chr9 15305753 15305874 -126965570 + L2 LINE L2 3121 3248 -24 2682 111 28 14 chr9 15305950 15306309 -126965135 - THE1B LTR MaLR 0 364 1 1929 157 14 3 chr9 15306733 15307026 -126964418 - AluSx SINE Alu -16 296 1 261 238 0 82 chr9 15307174 15307223 -126964221 + A-rich Low_complexity Low_complexity 3 54 -60 1551 187 9 78 chr9 15307223 15307555 -126963889 + AluJo SINE Alu 1 309 -3 261 238 0 82 chr9 15307555 15307627 -126963817 + A-rich Low_complexity Low_complexity 54 114 0 234 282 39 13 chr9 15307648 15307726 -126963718 - MIR SINE MIR -88 174 95 1606 204 0 7 chr9 15307728 15308043 -126963401 + AluJo SINE Alu 1 313 0 230 333 0 56 chr9 15309091 15309235 -126962209 - MIR SINE MIR -27 235 100 336 324 22 54 chr9 15309330 15309515 -126961929 - L3 LINE CR1 -211 1366 1188 276 185 0 0 chr9 15309696 15309750 -126961694 + (TA)n Simple_repeat Simple_repeat 2 55 0 1799 133 0 98 chr9 15309799 15310145 -126961299 + AluJb SINE Alu 1 312 0 195 100 0 0 chr9 15310328 15310358 -126961086 + (TTA)n Simple_repeat Simple_repeat 2 31 0 432 278 198 5 chr9 15310701 15310888 -126960556 + MIR SINE MIR 34 256 -6 14597 134 25 2 chr9 15310963 15313327 -126958117 - Tigger1 DNA MER2_type 0 2418 1 299 287 20 0 chr9 15314978 15315079 -126956365 + L1ME LINE L1 5713 5815 -306 22 35 0 0 chr9 15315489 15315518 -126955926 + AT_rich Low_complexity Low_complexity 1 29 0 1898 171 0 3 chr9 15315754 15316047 -126955397 + AluJo SINE Alu 1 292 -20 285 296 139 0 chr9 15316495 15316603 -126954841 + MER5C DNA MER1_type 1 123 -201 502 313 61 70 chr9 15317305 15317717 -126953727 + L1MC4a LINE L1 3524 3931 -2215 431 316 65 39 chr9 15317744 15318051 -126953393 + L1MC4a LINE L1 4747 5061 -1085 378 285 130 48 chr9 15318115 15318798 -126952646 + L1MC4a LINE L1 5192 5367 -779 2227 77 35 0 chr9 15319052 15319337 -126952107 - AluSc SINE Alu -14 295 1 268 234 52 32 chr9 15319868 15320022 -126951422 - L1M4 LINE L1 -798 5348 5192 329 325 0 57 chr9 15320117 15320240 -126951204 - MIR SINE MIR -95 113 4 327 229 229 25 chr9 15320756 15320913 -126950531 - L1MEc LINE L1 -4096 2300 2112 3306 46 0 5 chr9 15320968 15321380 -126950064 + L1PA3 LINE L1 5746 6155 0 26 0 0 27 chr9 15321390 15321401 -126950043 + AT_rich Low_complexity Low_complexity 1 11 -25 3244 28 0 3 chr9 15321401 15321788 -126949656 + L1PA4 LINE L1 5770 6155 0 26 0 0 27 chr9 15321788 15321813 -126949631 + AT_rich Low_complexity Low_complexity 11 36 0 1602 186 41 14 chr9 15321946 15322236 -126949208 - AluJb SINE Alu -14 298 1 495 246 8 0 chr9 15322664 15322798 -126948646 + L1MD2 LINE L1 6139 6273 -86 1756 146 32 14 chr9 15323244 15323552 -126947892 - AluSx SINE Alu 0 313 1 389 297 27 0 chr9 15324331 15324442 -126947002 - MIR3 SINE MIR -13 195 82 424 254 39 117 chr9 15325764 15326150 -126945294 - MLT1I LTR MaLR 0 409 54 1805 124 0 55 chr9 15326235 15326510 -126944934 + AluSg SINE Alu 21 280 -30 235 233 0 33 chr9 15326714 15326774 -126944670 + GA-rich Low_complexity Low_complexity 32 89 0 216 191 21 0 chr9 15327625 15327672 -126943772 + (TG)n Simple_repeat Simple_repeat 2 49 0 22 0 0 0 chr9 15327818 15327840 -126943604 + AT_rich Low_complexity Low_complexity 1 22 0 1514 231 14 16 chr9 15328427 15328791 -126942653 - MLT1A2 LTR MaLR -11 363 1 546 292 64 5 chr9 15330085 15330287 -126941157 + MIR SINE MIR 49 262 0 441 155 14 0 chr9 15332419 15332490 -126938954 - AluJ/FLAM SINE Alu -236 76 5 1121 179 0 31 chr9 15332554 15332750 -126938694 - AluJo SINE Alu -118 194 5 1451 146 50 124 chr9 15332873 15333277 -126938167 - MLT1A2 LTR MaLR 0 374 1 21 0 0 0 chr9 15333427 15333448 -126937996 + AT_rich Low_complexity Low_complexity 1 21 0 266 226 0 0 chr9 15334266 15334319 -126937125 + MIR SINE MIR 107 159 -103 491 272 103 22 chr9 15334541 15334725 -126936719 + MIR3 SINE MIR 3 201 -7 259 291 183 23 chr9 15337018 15337193 -126934251 - L2 LINE L2 -34 3279 3077 261 314 44 73 chr9 15337532 15337669 -126933775 - MER5B DNA MER1_type -38 140 8 496 297 39 28 chr9 15338269 15338451 -126932993 - MIR3 SINE MIR -7 201 18 427 295 93 79 chr9 15339082 15339401 -126932043 + MLT1J LTR MaLR 1 331 -180 1753 166 39 0 chr9 15339401 15339684 -126931760 + AluJb SINE Alu 1 294 -18 427 295 93 79 chr9 15339684 15339835 -126931609 + MLT1J LTR MaLR 331 478 -33 449 289 16 8 chr9 15340946 15341067 -126930377 - MIR SINE MIR -135 127 6 287 302 155 0 chr9 15342657 15342773 -126928671 + L2 LINE L2 2958 3091 -181 33 25 0 0 chr9 15342974 15343014 -126928430 + AT_rich Low_complexity Low_complexity 1 40 0 2048 145 0 0 chr9 15343027 15343317 -126928127 - AluSx SINE Alu -22 290 1 280 333 135 0 chr9 15343492 15343633 -126927811 - L3 LINE CR1 -164 1413 1254 287 181 95 31 chr9 15344358 15344465 -126926979 - MER5B DNA MER1_type 0 178 1 208 263 348 0 chr9 15344956 15345074 -126926370 - MIR SINE MIR -102 160 2 427 233 53 73 chr9 15346567 15346597 -126924847 - MIR SINE MIR -24 238 209 2441 93 3 0 chr9 15346597 15346909 -126924535 - AluSp SINE Alu 0 313 1 427 233 53 73 chr9 15346909 15347028 -126924416 - MIR SINE MIR -53 209 92 2063 134 3 3 chr9 15347653 15347958 -126923486 + AluSc SINE Alu 1 305 -4 411 279 103 49 chr9 15348855 15349059 -126922385 + MIR SINE MIR 48 262 0 21 0 0 0 chr9 15349303 15349324 -126922120 + AT_rich Low_complexity Low_complexity 1 21 0 598 271 33 17 chr9 15349399 15349580 -126921864 + MIR SINE MIR 67 250 -12 1998 139 19 13 chr9 15351237 15351547 -126919897 - AluJb SINE Alu 0 312 1 633 267 75 11 chr9 15353179 15353366 -126918078 - MIR SINE MIR -31 231 33 1850 131 0 11 chr9 15353436 15353703 -126917741 - AluJb SINE Alu -5 307 44 21 0 0 0 chr9 15355187 15355208 -126916236 + AT_rich Low_complexity Low_complexity 1 21 0 195 42 0 0 chr9 15355746 15355770 -126915674 + (A)n Simple_repeat Simple_repeat 1 24 0 24 0 0 0 chr9 15356062 15356086 -126915358 + AT_rich Low_complexity Low_complexity 1 24 0 198 0 0 0 chr9 15356454 15356476 -126914968 + (A)n Simple_repeat Simple_repeat 1 22 0 21 0 0 0 chr9 15357262 15357283 -126914161 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr9 15359223 15359252 -126912192 + AT_rich Low_complexity Low_complexity 1 29 0 216 86 0 0 chr9 15359748 15359783 -126911661 + (T)n Simple_repeat Simple_repeat 1 35 0 21 0 0 0 chr9 15359850 15359871 -126911573 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 15360439 15360460 -126910984 + AT_rich Low_complexity Low_complexity 1 21 0 270 160 0 0 chr9 15360531 15360581 -126910863 + T-rich Low_complexity Low_complexity 1 50 0 26 0 0 0 chr9 15361117 15361143 -126910301 + AT_rich Low_complexity Low_complexity 1 26 0 193 222 0 0 chr9 15362971 15363007 -126908437 + L2 LINE L2 3256 3291 -22 22 0 0 0 chr9 15364277 15364299 -126907145 + AT_rich Low_complexity Low_complexity 1 22 0 241 310 14 14 chr9 15365033 15365104 -126906340 + L3 LINE CR1 1025 1095 -482 490 282 118 9 chr9 15365290 15365482 -126905962 - MIR SINE MIR -19 243 35 313 358 119 11 chr9 15365512 15365688 -126905756 + L3 LINE CR1 1343 1537 -40 23 33 0 0 chr9 15366506 15366536 -126904908 + AT_rich Low_complexity Low_complexity 1 30 0 943 280 21 4 chr9 15366905 15367148 -126904296 - MIR SINE MIR -8 254 8 206 173 0 19 chr9 15370588 15370640 -126900804 + (CA)n Simple_repeat Simple_repeat 2 52 0 366 80 0 0 chr9 15370826 15370876 -126900568 + (T)n Simple_repeat Simple_repeat 1 50 0 1963 139 10 3 chr9 15372773 15373082 -126898362 + AluSx SINE Alu 1 311 -1 2321 40 0 20 chr9 15373409 15373706 -126897738 + AluY SINE Alu 1 291 -20 1977 134 24 3 chr9 15376904 15377194 -126894250 - AluSx SINE Alu -14 298 3 992 174 45 67 chr9 15377561 15377785 -126893659 - AluJo SINE Alu -10 302 84 21 36 0 0 chr9 15378962 15378990 -126892454 + AT_rich Low_complexity Low_complexity 1 28 0 341 296 185 6 chr9 15380541 15380703 -126890741 - MIR3 SINE MIR -17 191 1 210 71 0 0 chr9 15391739 15391767 -126879677 + (T)n Simple_repeat Simple_repeat 1 28 0 1850 123 0 4 chr9 15393963 15394223 -126877221 + AluSq SINE Alu 1 259 -54 185 0 40 0 chr9 15394239 15394264 -126877180 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 185 0 40 0 chr9 15394286 15394311 -126877133 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 23 0 0 0 chr9 15394739 15394762 -126876682 + AT_rich Low_complexity Low_complexity 1 23 0 388 271 25 25 chr9 15395344 15395466 -126875978 + MER5A DNA MER1_type 64 185 -4 2052 115 22 26 chr9 15395949 15396262 -126875182 + AluSx SINE Alu 1 312 0 448 335 43 43 chr9 15396332 15396586 -126874858 + L2 LINE L2 2598 2851 -463 229 380 0 6 chr9 15396668 15396826 -126874618 + (CCTG)n Simple_repeat Simple_repeat 3 159 0 2288 95 0 0 chr9 15398142 15398436 -126873008 - AluSg SINE Alu -14 296 3 184 365 148 0 chr9 15399232 15399347 -126872097 - L2 LINE L2 0 3272 3141 313 372 58 0 chr9 15399829 15399950 -126871494 - L2 LINE L2 0 3272 3145 874 206 29 40 chr9 15400321 15400593 -126870851 - L1MC5 LINE L1 -34 7927 7659 21 0 0 0 chr9 15401218 15401239 -126870205 + AT_rich Low_complexity Low_complexity 1 21 0 2280 97 10 0 chr9 15401398 15401697 -126869747 + AluSq SINE Alu 1 302 -11 24 32 0 0 chr9 15401893 15401924 -126869520 + AT_rich Low_complexity Low_complexity 1 31 0 228 86 0 0 chr9 15402370 15402405 -126869039 + (A)n Simple_repeat Simple_repeat 1 35 0 23 0 0 0 chr9 15402508 15402531 -126868913 + AT_rich Low_complexity Low_complexity 1 23 0 258 374 61 9 chr9 15403886 15404001 -126867443 - L2 LINE L2 -15 3257 3137 1565 188 29 0 chr9 15405499 15405845 -126865599 - AluJo SINE Alu 0 356 3 316 252 135 0 chr9 15407217 15407328 -126864116 + L1ME4a LINE L1 5524 5649 -472 214 234 53 96 chr9 15407328 15407422 -126864022 - L2 LINE L2 -2 3311 3222 733 248 80 57 chr9 15407431 15407592 -126863852 + L1ME4a LINE L1 5661 5817 -304 2191 108 0 19 chr9 15407592 15407908 -126863536 + AluSx SINE Alu 1 310 -2 733 248 80 57 chr9 15407908 15408182 -126863262 + L1ME4a LINE L1 5817 6106 -15 281 313 122 9 chr9 15410502 15410617 -126860827 - MIR3 SINE MIR -7 201 74 24 32 0 0 chr9 15410695 15410726 -126860718 + AT_rich Low_complexity Low_complexity 1 31 0 428 288 167 9 chr9 15411010 15411225 -126860219 + MIR SINE MIR 1 249 -13 615 276 97 17 chr9 15411312 15411714 -126859730 + L1MC5 LINE L1 7452 7885 -76 198 103 0 0 chr9 15411875 15411904 -126859540 + (TG)n Simple_repeat Simple_repeat 2 30 0 208 273 236 18 chr9 15412163 15412273 -126859171 + MIR3 SINE MIR 65 198 -10 229 217 0 0 chr9 15413460 15413506 -126857938 - MER103 DNA DNA -45 121 76 1648 171 0 4 chr9 15413634 15413908 -126857536 + AluJb SINE Alu 1 273 -39 347 176 0 14 chr9 15414805 15414879 -126856565 + LTR30 LTR ERV1 552 624 -98 216 0 0 0 chr9 15414885 15414909 -126856535 + (A)n Simple_repeat Simple_repeat 1 24 0 2058 125 75 20 chr9 15415111 15415456 -126855988 + THE1B LTR MaLR 1 364 0 21 57 0 0 chr9 15415944 15415979 -126855465 + AT_rich Low_complexity Low_complexity 1 35 0 378 0 0 0 chr9 15416974 15417016 -126854428 + (TG)n Simple_repeat Simple_repeat 2 43 0 403 274 29 10 chr9 15417522 15417624 -126853820 - L2 LINE L2 -5 3308 3205 285 371 13 13 chr9 15417921 15418072 -126853372 - L2 LINE L2 -507 2807 2657 1295 169 0 14 chr9 15418633 15418852 -126852592 - AluJb SINE Alu -12 300 85 517 326 38 21 chr9 15420213 15420449 -126850995 + MIR SINE MIR 21 260 -2 21 36 0 0 chr9 15420463 15420491 -126850953 + AT_rich Low_complexity Low_complexity 1 28 0 1803 177 0 7 chr9 15420619 15420924 -126850520 - AluJb SINE Alu -9 303 1 1644 170 50 20 chr9 15421094 15421394 -126850050 - AluJb SINE Alu -1 311 3 22 35 0 0 chr9 15421396 15421425 -126850019 + AT_rich Low_complexity Low_complexity 1 29 0 405 319 64 43 chr9 15421492 15421680 -126849764 - MIR3 SINE MIR -1 207 16 232 178 22 0 chr9 15423033 15423084 -126848360 + (CCTA)n Simple_repeat Simple_repeat 1 52 0 756 41 41 0 chr9 15423816 15423913 -126847531 + L1MA3 LINE L1 6158 6258 -47 486 264 29 7 chr9 15424063 15424203 -126847241 + MIR SINE MIR 114 256 -6 187 230 207 11 chr9 15424328 15424415 -126847029 - L2 LINE L2 0 3272 3169 1916 166 45 20 chr9 15425755 15426152 -126845292 + L1MA4 LINE L1 5883 6289 -11 505 279 29 47 chr9 15429934 15430106 -126841338 + MIR SINE MIR 8 176 -86 1890 107 0 0 chr9 15430851 15431135 -126840309 + AluSg SINE Alu 39 322 0 195 353 30 68 chr9 15431446 15431579 -126839865 + L2 LINE L2 3125 3252 -20 377 231 0 13 chr9 15433454 15433532 -126837912 + L3 LINE CR1 1238 1314 -263 248 250 50 38 chr9 15433653 15433733 -126837711 - MIR SINE MIR -60 202 122 237 108 0 0 chr9 15433814 15433851 -126837593 + (A)n Simple_repeat Simple_repeat 1 37 0 1118 251 85 54 chr9 15434453 15435030 -126836414 - L1ME4a LINE L1 -135 5986 5392 431 303 128 63 chr9 15435128 15435683 -126835761 - L1ME4a LINE L1 -2028 4118 3528 24 85 0 0 chr9 15435763 15435822 -126835622 + AT_rich Low_complexity Low_complexity 1 59 0 314 325 169 0 chr9 15435942 15436102 -126835342 + MIR SINE MIR 5 191 -71 263 286 27 0 chr9 15436172 15436284 -126835160 + A-rich Low_complexity Low_complexity 2 116 0 481 289 204 34 chr9 15436284 15436986 -126834458 + L1M4 LINE L1 2131 2951 -3195 252 265 73 35 chr9 15437017 15437216 -126834228 + L1M4 LINE L1 3081 3271 -2875 1851 157 36 12 chr9 15437216 15437553 -126833891 - MER7A DNA MER2_type -1 345 3 252 265 73 35 chr9 15437553 15437723 -126833721 + L1M4 LINE L1 3271 3464 -2682 707 232 11 17 chr9 15437737 15437914 -126833530 - MER5B DNA MER1_type -1 177 2 418 284 148 13 chr9 15437926 15438081 -126833363 + MER5A DNA MER1_type 10 185 -4 344 238 161 6 chr9 15438374 15438542 -126832902 + L1M4 LINE L1 3735 3928 -2218 1764 151 7 0 chr9 15438721 15439012 -126832432 + L1MB2 LINE L1 5878 6170 -1 457 195 57 110 chr9 15440118 15440243 -126831201 + L1MA10 LINE L1 5949 6079 -249 1735 171 34 0 chr9 15440243 15440535 -126830909 + AluSx SINE Alu 1 302 -10 457 195 57 110 chr9 15440535 15440611 -126830833 + L1MA10 LINE L1 6079 6323 -5 446 157 0 11 chr9 15442243 15442332 -126829112 + GA-rich Low_complexity Low_complexity 4 91 0 234 0 0 0 chr9 15442962 15442988 -126828456 + (CA)n Simple_repeat Simple_repeat 2 27 0 1600 159 59 14 chr9 15443209 15443499 -126827945 - AluSx SINE Alu -9 303 1 225 0 0 0 chr9 15443727 15443752 -126827692 + (A)n Simple_repeat Simple_repeat 1 25 0 564 280 155 19 chr9 15444060 15444267 -126827177 - MIR SINE MIR 0 262 28 233 204 0 0 chr9 15447561 15447605 -126823839 + (CA)n Simple_repeat Simple_repeat 2 45 0 503 216 27 27 chr9 15449835 15449946 -126821498 - MIR SINE MIR -80 182 72 806 223 27 0 chr9 15450434 15450618 -126820826 - MER5A DNA MER1_type 0 189 1 239 263 62 12 chr9 15450652 15450732 -126820712 + L2 LINE L2 2702 2785 -529 617 217 66 24 chr9 15451311 15451477 -126819967 + MER45A DNA AcHobo 1 173 -5 385 344 38 5 chr9 15452849 15453035 -126818409 + MIR SINE MIR 70 261 -1 22 70 0 0 chr9 15453234 15453277 -126818167 + AT_rich Low_complexity Low_complexity 1 43 0 489 34 0 0 chr9 15453520 15453579 -126817865 + (TC)n Simple_repeat Simple_repeat 2 60 0 405 0 0 0 chr9 15453578 15453623 -126817821 + (TG)n Simple_repeat Simple_repeat 2 46 0 * 2391 92 3 0 chr9 15454410 15454713 -126816731 + AluSp SINE Alu 1 304 -9 207 0 0 0 chr9 15456413 15456436 -126815008 + (A)n Simple_repeat Simple_repeat 1 23 0 396 0 0 0 chr9 15457874 15457918 -126813526 + (CA)n Simple_repeat Simple_repeat 2 45 0 354 224 12 24 chr9 15458476 15458561 -126812883 - MIR SINE MIR -104 158 75 190 296 19 0 chr9 15458906 15458960 -126812484 + MIR3 SINE MIR 100 154 -54 329 161 0 16 chr9 15459294 15459356 -126812088 + MLT1E1 LTR MaLR 3 63 -591 1887 158 26 3 chr9 15459554 15459857 -126811587 + AluJb SINE Alu 3 312 0 2038 131 10 0 chr9 15461234 15461524 -126809920 + AluSx SINE Alu 1 293 -19 1740 167 11 7 chr9 15462055 15462336 -126809108 + AluJo SINE Alu 1 282 -30 306 385 0 8 chr9 15463435 15463565 -126807879 - L2 LINE L2 -955 2359 2231 2130 96 0 0 chr9 15464470 15464740 -126806704 - AluSg SINE Alu -17 293 24 26 82 0 0 chr9 15465104 15465165 -126806279 + AT_rich Low_complexity Low_complexity 1 61 0 256 318 0 0 chr9 15465229 15465292 -126806152 + L2 LINE L2 3246 3308 -5 2452 70 0 3 chr9 15466181 15466481 -126804963 + AluSg SINE Alu 1 299 -11 2445 68 0 16 chr9 15466859 15467169 -126804275 - AluY SINE Alu -6 305 1 192 125 0 0 chr9 15467955 15467987 -126803457 + (A)n Simple_repeat Simple_repeat 1 32 0 27 49 0 0 chr9 15468253 15468294 -126803150 + AT_rich Low_complexity Low_complexity 1 41 0 393 329 45 13 chr9 15472027 15472182 -126799262 + L3 LINE CR1 281 440 -1137 183 338 53 53 chr9 15472404 15472537 -126798907 + L2 LINE L2 3137 3269 -3 234 0 0 0 chr9 15474382 15474408 -126797036 + (TC)n Simple_repeat Simple_repeat 2 27 0 * 459 0 0 0 chr9 15474407 15474458 -126796986 + (TG)n Simple_repeat Simple_repeat 2 52 0 329 325 41 16 chr9 15474475 15474598 -126796846 + MIR SINE MIR 56 181 -81 24 91 0 0 chr9 15474688 15474754 -126796690 + AT_rich Low_complexity Low_complexity 1 66 0 2151 121 0 3 chr9 15475104 15475401 -126796043 - AluJb SINE Alu -14 298 3 1595 128 4 24 chr9 15476450 15476700 -126794744 + AluSx SINE Alu 15 259 -53 186 262 24 0 chr9 15476701 15476743 -126794701 + L2 LINE L2 3222 3264 -8 277 275 29 0 chr9 15477819 15477888 -126793556 + MIR3 SINE MIR 135 205 -3 24 77 0 0 chr9 15478120 15478172 -126793272 + AT_rich Low_complexity Low_complexity 1 52 0 600 40 0 0 chr9 15478668 15478704 -126792740 + (TG)n Simple_repeat Simple_repeat 1 111 0 600 40 0 0 chr9 15478704 15478779 -126792665 + (TG)n Simple_repeat Simple_repeat 2 76 0 188 35 35 0 chr9 15478934 15478963 -126792481 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 391 270 122 0 chr9 15481387 15481502 -126789942 + L2 LINE L2 3183 3311 -2 948 141 0 0 chr9 15482608 15482743 -126788701 + AluSq/x SINE Alu 1 135 -178 1823 188 0 0 chr9 15482743 15483052 -126788392 + AluJb SINE Alu 1 309 -3 579 281 98 32 chr9 15484157 15484549 -126786895 + LTR33A LTR ERVL 6 475 -48 325 309 29 14 chr9 15490274 15490413 -126781031 - MER5A DNA MER1_type -5 184 44 271 326 158 41 chr9 15492281 15493158 -126778286 + L2 LINE L2 1986 2965 -349 262 326 22 22 chr9 15493609 15493701 -126777743 - L2 LINE L2 -23 3290 3199 324 0 0 0 chr9 15493824 15493860 -126777584 + (CA)n Simple_repeat Simple_repeat 1 36 0 1437 120 60 0 chr9 15546880 15547097 -126724347 + MER30 DNA MER1_type 1 230 0 920 211 68 77 chr9 15548374 15548710 -126722734 - MER2 DNA MER2_type -12 333 1 1017 206 38 0 chr9 15548842 15549080 -126722364 - L1MA9 LINE L1 -163 6149 5903 1273 14 0 0 chr9 15549256 15549400 -126722044 + AluYa5/8 SINE Alu 167 310 0 1736 181 3 3 chr9 15550179 15550478 -126720966 + AluJb SINE Alu 1 299 -13 2054 132 7 10 chr9 15550771 15551081 -126720363 + AluSq SINE Alu 1 309 -4 233 295 162 9 chr9 15551222 15551327 -126720117 + L2 LINE L2 3151 3271 -1 23 0 0 0 chr9 15551517 15551540 -126719904 + AT_rich Low_complexity Low_complexity 1 23 0 462 274 41 34 chr9 15551610 15551798 -126719646 - MIR SINE MIR -56 152 7 24 53 0 0 chr9 15551832 15551870 -126719574 + AT_rich Low_complexity Low_complexity 1 38 0 1918 113 8 4 chr9 15552108 15552373 -126719071 - AluSx SINE Alu -10 302 37 197 182 0 0 chr9 15553317 15553350 -126718094 - L2 LINE L2 0 3272 3240 1826 88 4 16 chr9 15553767 15554018 -126717426 - AluSp SINE Alu -65 248 1 358 256 47 47 chr9 15554378 15554507 -126716937 + L2 LINE L2 3168 3296 -17 288 0 0 0 chr9 15555049 15555081 -126716363 + (TA)n Simple_repeat Simple_repeat 2 33 0 270 164 0 0 chr9 15555205 15555260 -126716184 + GA-rich Low_complexity Low_complexity 1 55 0 2386 91 0 7 chr9 15557332 15557641 -126713803 - AluSx SINE Alu -3 309 3 2103 108 28 0 chr9 15558287 15558573 -126712871 - AluSg SINE Alu -14 296 3 25 65 0 0 chr9 15558621 15558667 -126712777 + AT_rich Low_complexity Low_complexity 1 46 0 264 330 80 0 chr9 15559243 15559343 -126712101 + MIR3 SINE MIR 56 163 -45 22 0 0 0 chr9 15560761 15560783 -126710661 + AT_rich Low_complexity Low_complexity 1 22 0 251 241 35 69 chr9 15561452 15561568 -126709876 - MIR SINE MIR -60 202 91 584 142 0 8 chr9 15561677 15561804 -126709640 + (TG)n Simple_repeat Simple_repeat 2 127 0 518 305 142 36 chr9 15561813 15562229 -126709215 - L2 LINE L2 -50 3263 2804 294 148 0 0 chr9 15564143 15564197 -126707247 + (TC)n Simple_repeat Simple_repeat 1 54 0 340 337 109 5 chr9 15568536 15568720 -126702724 + MIR SINE MIR 60 262 0 209 318 159 5 chr9 15568999 15569200 -126702244 + L2 LINE L2 2266 2497 -817 213 140 18 70 chr9 15569350 15569407 -126702037 + A-rich Low_complexity Low_complexity 1 54 0 2090 128 0 0 chr9 15569504 15569792 -126701652 + AluSx SINE Alu 1 288 -24 1182 204 22 117 chr9 15570701 15571113 -126700331 + MLT1A2 LTR MaLR 1 373 -1 329 339 116 21 chr9 15571503 15571692 -126699752 + MIR SINE MIR 53 259 -3 1838 135 4 4 chr9 15571834 15572101 -126699343 - AluJo SINE Alu 0 312 46 240 143 0 0 chr9 15572105 15572147 -126699297 + (TTCC)n Simple_repeat Simple_repeat 4 45 0 261 98 0 0 chr9 15572195 15572236 -126699208 + (TCCCC)n Simple_repeat Simple_repeat 3 43 0 1387 178 4 4 chr9 15572259 15572484 -126698960 - AluJo SINE Alu -87 225 1 806 301 120 31 chr9 15572491 15572976 -126698468 + MLT1K LTR MaLR 42 569 -19 346 343 108 5 chr9 15573050 15573254 -126698190 - MIR SINE MIR -1 261 37 203 218 18 0 chr9 15573572 15573627 -126697817 + GA-rich Low_complexity Low_complexity 4 59 0 327 146 0 0 chr9 15576850 15576905 -126694539 + (GGGA)n Simple_repeat Simple_repeat 1 55 0 683 197 0 8 chr9 15577462 15577584 -126693860 + FLAM_A SINE Alu 1 121 -12 24 53 0 0 chr9 15577584 15577622 -126693822 + AT_rich Low_complexity Low_complexity 1 38 0 213 335 195 0 chr9 15577735 15577920 -126693524 + L2 LINE L2 2804 3024 -248 1790 168 4 0 chr9 15577933 15578207 -126693237 + AluSx SINE Alu 1 275 -37 284 0 28 0 chr9 15578211 15578247 -126693197 + (CAAAA)n Simple_repeat Simple_repeat 1 37 0 1501 187 4 8 chr9 15578898 15579166 -126692278 + AluJo SINE Alu 46 312 0 410 277 145 24 chr9 15579839 15580005 -126691439 + MIR SINE MIR 7 192 -70 22 0 0 0 chr9 15580234 15580256 -126691188 + AT_rich Low_complexity Low_complexity 1 22 0 203 289 0 22 chr9 15580367 15580457 -126690987 + GA-rich Low_complexity Low_complexity 2 89 0 662 274 99 9 chr9 15580965 15581188 -126690256 + MIR SINE MIR 2 244 -18 2140 126 3 3 chr9 15581387 15581697 -126689747 + AluSx SINE Alu 1 310 -2 2124 101 0 14 chr9 15583532 15583849 -126687595 + AluSx SINE Alu 1 313 0 2168 117 0 0 chr9 15584948 15585239 -126686205 + AluSx SINE Alu 1 291 -21 2311 191 92 20 chr9 15585377 15585978 -126685466 - LTR48B LTR ERV1 0 644 1 241 26 53 0 chr9 15586679 15586717 -126684727 + (TTTG)n Simple_repeat Simple_repeat 3 42 0 202 397 98 16 chr9 15588677 15588871 -126682573 - L3b LINE CR1 -5 1578 1369 1628 174 18 60 chr9 15589164 15589549 -126681895 + MLT1A2 LTR MaLR 1 369 -5 325 324 133 82 chr9 15589625 15589940 -126681504 - L2 LINE L2 -2 3270 2940 225 349 95 27 chr9 15590100 15590222 -126681222 + L2 LINE L2 2227 2339 -975 1548 204 13 25 chr9 15590222 15590536 -126680908 + AluJb SINE Alu 1 310 -2 225 349 95 27 chr9 15590536 15590708 -126680736 + L2 LINE L2 2339 2541 -773 27 0 0 0 chr9 15591162 15591189 -126680255 + AT_rich Low_complexity Low_complexity 1 27 0 564 266 23 75 chr9 15591428 15591733 -126679711 + L2 LINE L2 3025 3313 0 1985 101 52 11 chr9 15591764 15592050 -126679394 + AluSx SINE Alu 1 298 -14 252 0 0 0 chr9 15594493 15594521 -126676923 + (A)n Simple_repeat Simple_repeat 1 28 0 288 263 0 13 chr9 15595077 15595153 -126676291 + C-rich Low_complexity Low_complexity 3 77 0 243 0 0 0 chr9 15596606 15596633 -126674811 + (A)n Simple_repeat Simple_repeat 1 27 0 194 295 27 89 chr9 15597680 15597792 -126673652 - L2 LINE L2 -2855 459 355 360 0 0 0 chr9 15598165 15598205 -126673239 + (CA)n Simple_repeat Simple_repeat 2 41 0 377 313 43 18 chr9 15600460 15600623 -126670821 + MIR SINE MIR 40 206 -56 315 104 0 0 chr9 15601237 15601285 -126670159 + (CA)n Simple_repeat Simple_repeat 1 48 0 614 265 60 0 chr9 15604115 15604266 -126667178 + MIR SINE MIR 40 199 -63 289 293 87 33 chr9 15606556 15606706 -126664738 - MIR SINE MIR -70 192 35 566 273 70 31 chr9 15606710 15606937 -126664507 + MIR SINE MIR 24 259 -3 313 309 75 11 chr9 15607945 15608123 -126663321 + MIR SINE MIR 8 193 -69 2244 106 3 0 chr9 15609044 15609337 -126662107 - AluSx SINE Alu -18 294 1 509 245 221 14 chr9 15609466 15609674 -126661770 + MIR SINE MIR 7 257 -5 335 330 13 3 chr9 15609776 15609904 -126661540 - MIR SINE MIR -62 146 34 437 280 127 0 chr9 15610585 15610703 -126660741 + L2 LINE L2 3138 3270 -2 2456 35 14 0 chr9 15611065 15611354 -126660090 + AluY SINE Alu 1 293 -18 2035 82 14 11 chr9 15611354 15611635 -126659809 - AluSg SINE Alu -28 282 1 315 71 0 0 chr9 15612997 15613039 -126658405 + (TG)n Simple_repeat Simple_repeat 2 43 0 198 103 0 0 chr9 15613039 15613068 -126658376 + (CATATA)n Simple_repeat Simple_repeat 2 30 0 22 80 0 0 chr9 15613079 15613129 -126658315 + AT_rich Low_complexity Low_complexity 1 50 0 310 227 0 0 chr9 15613137 15613203 -126658241 - L1MC4 LINE L1 -1337 6705 6640 341 222 19 0 chr9 15613453 15613561 -126657883 + (CATATA)n Simple_repeat Simple_repeat 1 110 0 382 362 81 0 chr9 15614312 15614522 -126656922 - MIR SINE MIR -16 246 20 1998 120 14 4 chr9 15615117 15615393 -126656051 + AluSx SINE Alu 1 279 -33 21 57 0 0 chr9 15615471 15615506 -126655938 + AT_rich Low_complexity Low_complexity 1 35 0 237 288 163 0 chr9 15616136 15616216 -126655228 + MIR3 SINE MIR 102 194 -14 295 324 38 19 chr9 15616460 15616565 -126654879 - MIR3 SINE MIR -11 197 91 2136 69 0 21 chr9 15619259 15619580 -126651864 + AluY SINE Alu 1 315 0 615 237 26 0 chr9 15620169 15620321 -126651123 - MIR SINE MIR -57 205 50 1584 195 29 11 chr9 15620360 15620709 -126650735 + MLT1A1 LTR MaLR 11 365 0 22 0 0 0 chr9 15621802 15621824 -126649620 + AT_rich Low_complexity Low_complexity 1 22 0 24 67 0 0 chr9 15621894 15621939 -126649505 + AT_rich Low_complexity Low_complexity 1 45 0 210 171 0 0 chr9 15625480 15625521 -126645923 + CT-rich Low_complexity Low_complexity 4 44 0 218 152 0 43 chr9 15626638 15626684 -126644760 + C-rich Low_complexity Low_complexity 2 45 0 24 32 0 0 chr9 15629944 15629975 -126641469 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr9 15630250 15630271 -126641173 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 15633864 15633886 -126637558 + AT_rich Low_complexity Low_complexity 1 22 0 246 128 0 0 chr9 15639024 15639063 -126632381 + (TCCC)n Simple_repeat Simple_repeat 2 40 0 225 0 0 0 chr9 15640545 15640570 -126630874 + (T)n Simple_repeat Simple_repeat 1 25 0 234 0 0 0 chr9 15644116 15644142 -126627302 + (A)n Simple_repeat Simple_repeat 1 26 0 258 176 0 0 chr9 15644336 15644387 -126627057 + (TG)n Simple_repeat Simple_repeat 1 51 0 21 0 0 0 chr9 15644710 15644731 -126626713 + GC_rich Low_complexity Low_complexity 1 21 0 35 54 0 0 chr9 15647194 15647250 -126624194 + AT_rich Low_complexity Low_complexity 1 56 0 23 33 0 0 chr9 15647864 15647894 -126623550 + AT_rich Low_complexity Low_complexity 1 30 0 192 40 0 0 chr9 15649854 15649879 -126621565 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1714 154 7 21 chr9 15650193 15650479 -126620965 - AluJb SINE Alu -18 294 13 22 0 0 0 chr9 15650502 15650524 -126620920 + AT_rich Low_complexity Low_complexity 1 22 0 418 298 73 0 chr9 15650932 15651110 -126620334 + Charlie8 DNA MER1_type 84 274 -2143 399 283 58 22 chr9 15651184 15651322 -126620122 - MIR3 SINE MIR -48 160 18 2359 108 0 0 chr9 15651549 15651855 -126619589 - AluSg SINE Alu -4 306 1 2290 92 0 13 chr9 15651884 15652199 -126619245 + AluY SINE Alu 1 311 0 181 231 51 51 chr9 15653173 15653251 -126618193 - MIR SINE MIR -1 261 184 699 253 25 5 chr9 15653434 15653636 -126617808 - MARNA DNA Mariner -146 440 235 453 327 70 19 chr9 15653704 15653918 -126617526 + MIR SINE MIR 28 252 -10 2332 87 7 0 chr9 15654093 15654393 -126617051 + AluSx SINE Alu 1 302 -10 224 292 15 0 chr9 15654558 15654623 -126616821 - L2 LINE L2 -13 3300 3235 694 296 11 5 chr9 15655235 15655421 -126616023 - MIR SINE MIR -61 201 15 2061 270 67 18 chr9 15655779 15656698 -126614746 - L1ME3A LINE L1 -20 6150 5181 602 237 0 24 chr9 15656704 15656722 -126614722 - L1MA10 LINE L1 0 6334 6317 3596 201 36 26 chr9 15656722 15658200 -126613244 - L1ME1 LINE L1 -5 6161 4670 187 254 48 32 chr9 15658528 15658591 -126612853 - MIR SINE MIR -13 249 186 481 210 20 0 chr9 15658680 15658780 -126612664 + MER45 DNA AcHobo 1 102 -938 243 0 0 0 chr9 15658783 15658810 -126612634 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1312 204 14 17 chr9 15658895 15659189 -126612255 - MER58B DNA MER1_type -43 298 6 398 286 4 0 chr9 15659192 15659419 -126612025 + L1ME3A LINE L1 5647 5944 -226 302 284 231 18 chr9 15659445 15659614 -126611830 + L1ME3A LINE L1 5927 6131 -39 2605 58 0 0 chr9 15660155 15660466 -126610978 + AluY SINE Alu 1 311 0 273 375 40 23 chr9 15660477 15660653 -126610791 + MIR SINE MIR 14 192 -70 291 259 23 6 chr9 15660751 15660932 -126610512 + CT-rich Low_complexity Low_complexity 1 184 0 314 206 16 0 chr9 15661246 15661309 -126610135 + MIR SINE MIR 199 262 0 305 362 37 5 chr9 15661577 15661765 -126609679 - L3 LINE CR1 -827 750 557 549 265 20 14 chr9 15662033 15662180 -126609264 - MIR3 SINE MIR -40 168 21 769 229 6 34 chr9 15662395 15662570 -126608874 - MER5B DNA MER1_type -5 173 4 206 170 170 0 chr9 15663309 15663362 -126608082 + MER91A DNA MER1_type 18 79 -117 469 132 8 41 chr9 15664466 15664587 -126606857 + (GGAA)n Simple_repeat Simple_repeat 2 118 0 201 283 0 0 chr9 15664803 15664849 -126606595 + (TATATG)n Simple_repeat Simple_repeat 2 47 0 399 41 0 0 chr9 15666129 15666178 -126605266 + (GA)n Simple_repeat Simple_repeat 2 50 0 208 269 0 0 chr9 15666230 15666308 -126605136 + (CAGA)n Simple_repeat Simple_repeat 2 79 0 30 0 0 0 chr9 15668153 15668183 -126603261 + GC_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr9 15669192 15669220 -126602224 + AT_rich Low_complexity Low_complexity 1 28 0 229 120 0 80 chr9 15669411 15669461 -126601983 + (AGGGGG)n Simple_repeat Simple_repeat 3 48 0 197 78 0 47 chr9 15673855 15673891 -126597553 - MIR SINE MIR -63 145 112 22 0 0 0 chr9 15674169 15674191 -126597253 + AT_rich Low_complexity Low_complexity 1 22 0 180 77 0 0 chr9 15675889 15675915 -126595529 + (T)n Simple_repeat Simple_repeat 1 26 0 220 340 9 19 chr9 15676018 15676124 -126595320 + MIR3 SINE MIR 87 191 -17 333 0 0 0 chr9 15676823 15676860 -126594584 + (TG)n Simple_repeat Simple_repeat 2 38 0 1971 147 110 8 chr9 15677162 15677516 -126593928 + MLT1B LTR MaLR 1 390 0 608 222 28 44 chr9 15677625 15677717 -126593727 + MER45A DNA AcHobo 1 90 -1491 2442 80 0 3 chr9 15677717 15678029 -126593415 + AluY SINE Alu 1 311 0 608 222 28 44 chr9 15678029 15678116 -126593328 + MER45A DNA AcHobo 90 177 -1 2370 212 8 12 chr9 15679691 15680196 -126591248 + L1MB8 LINE L1 5652 6154 -24 229 216 39 10 chr9 15680220 15680322 -126591122 + (TA)n Simple_repeat Simple_repeat 1 105 0 482 287 84 24 chr9 15680627 15680793 -126590651 + MLT1K LTR MaLR 12 187 -401 1795 232 27 10 chr9 15680793 15681203 -126590241 - MER63B DNA MER1_type 0 436 20 1428 259 75 25 chr9 15681210 15681689 -126589755 + MLT1D LTR MaLR 1 503 -2 324 206 175 21 chr9 15681718 15681815 -126589629 + MLT1K LTR MaLR 199 310 -278 22 80 0 0 chr9 15681976 15682026 -126589418 + AT_rich Low_complexity Low_complexity 1 50 0 2471 56 0 37 chr9 15682576 15682898 -126588546 - AluY SINE Alu -1 310 1 29 0 0 0 chr9 15683029 15683058 -126588386 + AT_rich Low_complexity Low_complexity 1 29 0 1523 201 7 7 chr9 15684656 15684964 -126586480 + AluJo SINE Alu 1 308 -4 568 236 69 0 chr9 15685000 15685144 -126586300 + MER69A DNA AcHobo 19 172 -5 216 171 49 0 chr9 15685623 15685664 -126585780 + (TATATG)n Simple_repeat Simple_repeat 3 45 0 237 184 0 0 chr9 15685664 15685713 -126585731 + LTR66 LTR ERVL 395 443 -167 960 266 91 36 chr9 15685734 15686261 -126585183 - L1ME4a LINE L1 -74 6047 5492 476 234 35 35 chr9 15687058 15687199 -126584245 + MIR SINE MIR 119 259 -3 2223 116 3 3 chr9 15688521 15688824 -126582620 - AluSg SINE Alu -5 305 3 494 334 40 35 chr9 15689141 15689512 -126581932 - L2 LINE L2 0 3272 2900 3514 30 0 0 chr9 15689651 15690056 -126581388 + L1PA7 LINE L1 5722 6126 -28 431 120 40 80 chr9 15690109 15690209 -126581235 + L1PA8 LINE L1 6077 6172 0 358 206 199 15 chr9 15690903 15691034 -126580410 + MIR SINE MIR 85 239 -23 227 303 145 0 chr9 15691115 15691191 -126580253 + L2 LINE L2 3195 3281 -32 225 160 0 60 chr9 15691194 15691244 -126580200 - MIR SINE MIR -148 114 68 358 345 71 58 chr9 15691558 15692010 -126579434 + L2 LINE L2 2325 2782 -532 244 370 94 0 chr9 15692057 15692249 -126579195 + L2 LINE L2 2841 3050 -222 2255 111 0 0 chr9 15692855 15693144 -126578300 + AluSx SINE Alu 1 289 -23 243 0 0 0 chr9 15693157 15693184 -126578260 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 290 229 18 110 chr9 15693469 15693578 -126577866 + MIR SINE MIR 25 106 -102 525 217 172 59 chr9 15693585 15693806 -126577638 + Charlie8 DNA MER1_type 2 247 -2170 235 231 123 15 chr9 15694246 15694311 -126577133 + Charlie8 DNA MER1_type 2337 2408 -9 336 111 0 0 chr9 15695667 15695721 -126575723 + (TG)n Simple_repeat Simple_repeat 1 54 0 218 254 0 0 chr9 15696232 15696287 -126575157 + CT-rich Low_complexity Low_complexity 1 55 0 1989 141 0 0 chr9 15696670 15696980 -126574464 + AluSx SINE Alu 1 310 0 636 271 104 88 chr9 15697107 15697418 -126574026 - MLT1J LTR MaLR -4 507 184 2207 103 7 10 chr9 15697418 15697720 -126573724 + AluSq SINE Alu 1 301 -12 636 271 104 88 chr9 15697720 15697907 -126573537 - MLT1J LTR MaLR -327 184 1 962 168 19 0 chr9 15698109 15698264 -126573180 - FAM SINE Alu -16 159 2 2137 130 0 3 chr9 15698561 15698860 -126572584 - AluSx SINE Alu -14 298 1 1385 206 25 11 chr9 15699282 15699559 -126571885 - AluJo SINE Alu -31 281 1 235 338 102 0 chr9 15700149 15700306 -126571138 + MIR SINE MIR 74 246 -16 2402 101 0 0 chr9 15700389 15700697 -126570747 - AluSc SINE Alu -1 308 1 207 0 0 0 chr9 15701716 15701739 -126569705 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2382 85 0 0 chr9 15701742 15702025 -126569419 - AluSq SINE Alu -30 283 1 249 309 169 0 chr9 15702764 15702900 -126568544 - MIR SINE MIR -52 210 52 848 40 0 0 chr9 15703039 15703139 -126568305 + AluSg/x SINE Alu 203 302 -7 2022 156 3 0 chr9 15703226 15703527 -126567917 - AluJb SINE Alu -4 308 7 277 176 0 15 chr9 15703820 15703913 -126567531 + L2 LINE L2 3187 3313 0 209 184 0 0 chr9 15704116 15704154 -126567290 + L2 LINE L2 3179 3216 -97 264 59 0 0 chr9 15704388 15704422 -126567022 + (GA)n Simple_repeat Simple_repeat 1 34 0 499 252 147 43 chr9 15704594 15704852 -126566592 + L1ME3A LINE L1 5554 5838 -332 603 273 20 10 chr9 15707145 15707343 -126564101 - MIR SINE MIR -21 241 42 352 226 25 57 chr9 15707592 15707751 -126563693 - L1ME4a LINE L1 -42 6079 5926 2045 155 0 0 chr9 15707827 15708123 -126563321 - AluSx SINE Alu -14 298 3 311 271 41 33 chr9 15708915 15709037 -126562407 + MER103 DNA DNA 2 124 -42 475 241 92 24 chr9 15709422 15709723 -126561721 + L1ME LINE L1 5152 5473 -755 242 298 29 29 chr9 15709740 15709844 -126561600 + L1ME LINE L1 5540 5643 -519 230 286 13 97 chr9 15710040 15710194 -126561250 + L1ME LINE L1 5647 5787 -383 633 189 0 24 chr9 15710252 15710379 -126561065 + AluJb SINE Alu 121 244 -68 652 188 11 22 chr9 15710406 15710587 -126560857 + GA-rich Low_complexity Low_complexity 2 180 0 530 303 17 11 chr9 15710935 15711110 -126560334 + MER5B DNA MER1_type 1 176 -2 363 231 0 0 chr9 15712289 15712367 -126559077 + MIR SINE MIR 83 160 -102 861 233 24 75 chr9 15712388 15712595 -126558849 + L1MC3 LINE L1 6772 6957 -828 2276 168 3 3 chr9 15712595 15712959 -126558485 + MLT1A1 LTR MaLR 1 364 -1 861 233 24 75 chr9 15712959 15713082 -126558362 + L1MC3 LINE L1 6957 7085 -700 345 306 0 10 chr9 15713090 15713188 -126558256 + MLT1F1 LTR MaLR 35 131 -436 705 157 60 15 chr9 15713196 15713330 -126558114 + L1MC3 LINE L1 7203 7342 -443 3937 159 20 44 chr9 15713330 15714073 -126557371 + MER50 LTR ERV1 1 725 -9 2184 174 34 5 chr9 15714073 15714487 -126556957 + L1MC3 LINE L1 7351 7776 -9 1752 172 31 0 chr9 15714488 15714778 -126556666 + AluJb SINE Alu 1 299 -13 278 306 74 0 chr9 15714786 15714894 -126556550 + MIR SINE MIR 147 262 0 212 308 0 0 chr9 15716052 15716104 -126555340 + (TCCA)n Simple_repeat Simple_repeat 2 53 0 404 342 51 25 chr9 15716107 15716265 -126555179 - L2 LINE L2 -9 3263 3102 2576 127 25 0 chr9 15716366 15716721 -126554723 - THE1B LTR MaLR 0 364 1 326 290 84 0 chr9 15716774 15716881 -126554563 + MIR SINE MIR 28 143 -119 252 0 0 0 chr9 15717769 15717797 -126553647 + (T)n Simple_repeat Simple_repeat 1 28 0 204 200 0 0 chr9 15719134 15719169 -126552275 + polypyrimidine Low_complexity Low_complexity 2 36 0 182 333 14 0 chr9 15720008 15720077 -126551367 - MIR SINE MIR 0 262 193 1141 191 89 57 chr9 15721011 15721325 -126550119 + MER33 DNA MER1_type 1 324 0 284 367 25 25 chr9 15723484 15723604 -126547840 + L2 LINE L2 3143 3262 -10 30 27 0 0 chr9 15724888 15724925 -126546519 + AT_rich Low_complexity Low_complexity 1 37 0 273 57 0 0 chr9 15725546 15725581 -126545863 + (TCCCC)n Simple_repeat Simple_repeat 4 38 0 378 253 11 0 chr9 15726328 15726415 -126545029 - L2 LINE L2 0 3272 3185 373 320 62 65 chr9 15726650 15726975 -126544469 + LTR67 LTR ERVL 83 406 -151 1231 252 95 27 chr9 15726991 15727403 -126544041 + MLT1J1 LTR MaLR 4 443 -3 916 286 48 33 chr9 15728669 15729018 -126542426 + MLT1J1 LTR MaLR 79 423 -23 417 241 23 45 chr9 15729067 15729200 -126542244 + LTR67 LTR ERVL 418 547 -10 1591 210 3 3 chr9 15729728 15730023 -126541421 - AluJo SINE Alu -12 300 6 408 313 71 65 chr9 15730446 15730756 -126540688 - MLT1J LTR MaLR -181 330 19 25 0 0 0 chr9 15730798 15730823 -126540621 + AT_rich Low_complexity Low_complexity 1 25 0 964 237 19 10 chr9 15730833 15731040 -126540404 - MIR SINE MIR -21 241 33 238 163 0 41 chr9 15731079 15731128 -126540316 + MER63 DNA MER1_type 2 48 -882 1322 148 14 0 chr9 15731182 15731399 -126540045 + MER63 DNA MER1_type 837 1056 -6 2152 198 88 29 chr9 15733747 15734238 -126537206 + MLT1F LTR MaLR 12 531 -11 305 336 151 0 chr9 15734316 15734435 -126537009 + L2 LINE L2 3136 3272 0 264 363 55 7 chr9 15735465 15735611 -126535833 + MIR SINE MIR 21 173 -89 2322 100 10 0 chr9 15736197 15736498 -126534946 + AluSc SINE Alu 1 304 -5 544 306 60 0 chr9 15736575 15736741 -126534703 + MIR SINE MIR 76 250 -12 2339 209 43 82 chr9 15736966 15737575 -126533869 - MLT1E LTR MaLR -2 591 7 332 366 32 21 chr9 15737975 15738161 -126533283 + L3b LINE CR1 1230 1417 -166 584 178 10 0 chr9 15738182 15738283 -126533161 + Tigger3b DNA MER2_type 1 102 -1129 5903 114 29 8 chr9 15738286 15738927 -126532517 + Tigger3b DNA MER2_type 284 951 -2077 2374 92 3 3 chr9 15738927 15739232 -126532212 - AluSg SINE Alu -5 305 1 5903 114 29 8 chr9 15739232 15739495 -126531949 + Tigger3b DNA MER2_type 951 1207 -24 401 350 0 62 chr9 15739691 15739816 -126531628 + MER5A DNA MER1_type 8 118 -71 2421 65 10 10 chr9 15739816 15740122 -126531322 - AluSq SINE Alu -7 306 1 401 350 0 62 chr9 15740122 15740190 -126531254 + MER5A DNA MER1_type 118 189 0 203 133 0 0 chr9 15741330 15741360 -126530084 + (GAAA)n Simple_repeat Simple_repeat 2 31 0 608 218 188 3 chr9 15741484 15741634 -126529810 + MER45A DNA AcHobo 1 171 -7 202 375 52 0 chr9 15741965 15742061 -126529383 - MIR SINE MIR -56 152 52 2230 118 3 0 chr9 15742206 15742512 -126528932 + AluSx SINE Alu 1 307 -5 201 196 0 0 chr9 15743192 15743238 -126528206 + CT-rich Low_complexity Low_complexity 4 49 0 246 316 0 13 chr9 15744683 15744759 -126526685 - MLT1K LTR MaLR -329 259 185 709 158 123 0 chr9 15746394 15746540 -126524904 - MER103 DNA DNA -1 165 2 216 0 0 0 chr9 15747649 15747673 -126523771 + (T)n Simple_repeat Simple_repeat 1 24 0 286 328 78 9 chr9 15747784 15747900 -126523544 + L2 LINE L2 3149 3272 0 233 366 106 14 chr9 15748432 15748574 -126522870 + L2 LINE L2 3112 3266 -6 216 97 0 0 chr9 15749299 15749330 -126522114 + (TAA)n Simple_repeat Simple_repeat 2 32 0 1005 272 16 8 chr9 15749333 15749587 -126521857 - MIR SINE MIR -4 258 3 2162 140 7 3 chr9 15749979 15750287 -126521157 - AluJb SINE Alu -3 309 1 236 280 107 0 chr9 15751361 15751436 -126520008 - MIR SINE MIR -133 129 47 1900 149 0 0 chr9 15752616 15752923 -126518521 - AluSx SINE Alu 0 307 1 188 241 56 37 chr9 15753695 15753749 -126517695 - MIR SINE MIR -149 113 59 486 256 92 61 chr9 15754144 15754437 -126517007 + MLT1K LTR MaLR 186 487 -101 695 0 0 0 chr9 15755981 15756053 -126515391 - tRNA-His-CAC tRNA tRNA -3 72 1 264 310 0 0 chr9 15757310 15757381 -126514063 + MER113 DNA MER1_type? 4 74 -447 1021 230 39 9 chr9 15757415 15757645 -126513799 + MIR SINE MIR 21 257 -5 695 262 103 24 chr9 15757653 15757993 -126513451 + MER113 DNA MER1_type? 114 480 -41 724 307 118 12 chr9 15758027 15758359 -126513085 - MLT1I LTR MaLR -40 369 3 236 371 33 26 chr9 15758799 15758950 -126512494 - L2 LINE L2 0 3272 3121 581 265 15 46 chr9 15759034 15759230 -126512214 + MIR3 SINE MIR 6 195 -13 333 313 54 14 chr9 15759429 15759576 -126511868 + L3b LINE CR1 1328 1480 -103 321 169 0 0 chr9 15760053 15760112 -126511332 + (TG)n Simple_repeat Simple_repeat 1 59 0 1700 162 4 0 chr9 15761130 15761401 -126510043 + AluJb SINE Alu 1 272 -40 800 213 59 0 chr9 15761425 15761594 -126509850 + MIR SINE MIR 80 258 -4 188 160 40 133 chr9 15762237 15762312 -126509132 + L2 LINE L2 3159 3226 -46 240 143 0 0 chr9 15763176 15763218 -126508226 + (A)n Simple_repeat Simple_repeat 1 42 0 200 188 0 0 chr9 15763620 15763652 -126507792 + polypyrimidine Low_complexity Low_complexity 2 33 0 578 266 115 18 chr9 15763993 15764219 -126507225 - MIR SINE MIR -3 259 12 320 176 24 47 chr9 15764344 15764429 -126507015 + MIR SINE MIR 110 192 -70 1357 171 121 44 chr9 15764476 15764867 -126506577 - MLT1C LTR MaLR 0 467 3 386 317 64 36 chr9 15765311 15765592 -126505852 + L2 LINE L2 2188 2476 -838 268 352 40 40 chr9 15765808 15765933 -126505511 + L2 LINE L2 3143 3267 -5 587 291 15 10 chr9 15766157 15766353 -126505091 - L2 LINE L2 -964 2350 2154 188 241 48 60 chr9 15766483 15766566 -126504878 - L2 LINE L2 -1064 2250 2169 618 213 6 25 chr9 15766986 15767146 -126504298 - L1ME3A LINE L1 -213 5940 5784 1054 264 56 60 chr9 15767162 15767791 -126503653 - L1ME3A LINE L1 -1794 4335 3710 680 311 70 39 chr9 15767849 15768588 -126502856 - L1ME3A LINE L1 -4579 1731 970 230 210 33 161 chr9 15768794 15769099 -126502345 - L1MC5 LINE L1 -52 7909 7644 680 299 59 29 chr9 15769160 15769615 -126501829 - L1ME3A LINE L1 -5204 915 447 22 0 0 0 chr9 15770428 15770450 -126500994 + AT_rich Low_complexity Low_complexity 1 22 0 734 251 17 0 chr9 15771318 15771493 -126499951 - MER5B DNA MER1_type 0 178 1 2067 108 0 18 chr9 15771689 15771975 -126499469 + AluSx SINE Alu 1 281 -31 207 0 0 0 chr9 15771982 15772005 -126499439 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2120 78 0 0 chr9 15772022 15772306 -126499138 - L1PA6 LINE L1 -11 6143 5860 568 205 91 124 chr9 15772332 15772814 -126498630 + MER110A LTR ERV1 1 466 -2 198 277 179 18 chr9 15772989 15773101 -126498343 - MIR SINE MIR -99 163 34 267 186 39 108 chr9 15773391 15773493 -126497951 - L1MC5 LINE L1 -48 7913 7819 328 233 63 50 chr9 15773525 15773571 -126497873 - L1MC5 LINE L1 -222 7739 7695 180 0 0 0 chr9 15773571 15773591 -126497853 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 328 233 63 50 chr9 15773591 15773703 -126497741 - L1MC5 LINE L1 -266 7695 7579 693 36 0 0 chr9 15774376 15774471 -126496973 + (GGAAA)n Simple_repeat Simple_repeat 1 179 0 693 36 0 0 chr9 15774471 15774555 -126496889 + (GGAAA)n Simple_repeat Simple_repeat 5 88 0 2144 79 43 0 chr9 15775842 15776119 -126495325 + AluSc SINE Alu 1 289 -20 900 263 62 36 chr9 15776818 15777122 -126494322 + MLT1I LTR MaLR 98 409 0 246 184 0 0 chr9 15777143 15777192 -126494252 + L2 LINE L2 3265 3313 0 317 155 17 0 chr9 15778150 15778208 -126493236 - MER116 DNA Mariner -21 59 1 1211 292 47 43 chr9 15778492 15779193 -126492251 + L1MC4a LINE L1 5255 5958 -1850 19435 37 1 0 chr9 15779412 15782569 -126488875 + L1PA4 LINE L1 2995 6152 -3 24 32 0 0 chr9 15782697 15782728 -126488716 + AT_rich Low_complexity Low_complexity 1 31 0 550 343 0 27 chr9 15782738 15782957 -126488487 + L2 LINE L2 2665 2877 -437 2546 61 0 0 chr9 15784312 15784623 -126486821 - AluY SINE Alu 0 311 1 25 65 0 0 chr9 15785093 15785139 -126486305 + AT_rich Low_complexity Low_complexity 1 46 0 259 150 20 60 chr9 15785147 15785247 -126486197 + (TTAA)n Simple_repeat Simple_repeat 3 98 0 317 277 96 0 chr9 15785287 15785464 -126485980 + L1M4 LINE L1 4411 4604 -1542 2576 39 13 0 chr9 15785696 15786001 -126485443 - AluY SINE Alu -2 309 1 576 278 116 5 chr9 15786792 15787008 -126484436 + MIR SINE MIR 23 262 0 324 0 0 0 chr9 15787614 15787650 -126483794 + (CA)n Simple_repeat Simple_repeat 2 37 0 876 128 12 35 chr9 15787808 15787980 -126483464 - MER20 DNA MER1_type -26 193 26 266 213 46 28 chr9 15789608 15789716 -126481728 + (TTCA)n Simple_repeat Simple_repeat 3 112 0 413 291 48 0 chr9 15789720 15789823 -126481621 - L2 LINE L2 -4 3309 3202 423 298 146 6 chr9 15789835 15790006 -126481438 - MIR SINE MIR -48 214 20 291 294 94 25 chr9 15790761 15790921 -126480523 - MIR SINE MIR -26 236 66 662 232 20 13 chr9 15792089 15792240 -126479204 + MIR SINE MIR 79 230 -32 477 265 54 30 chr9 15792808 15792974 -126478470 + MIR3 SINE MIR 21 190 -18 1263 186 18 65 chr9 15794355 15794615 -126476829 + MER5C DNA MER1_type 3 245 -79 2388 58 0 3 chr9 15794615 15794907 -126476537 + AluY SINE Alu 16 306 -5 1263 186 18 65 chr9 15794907 15794984 -126476460 + MER5C DNA MER1_type 245 324 0 1950 184 37 3 chr9 15796174 15796527 -126474917 - MLT1A1 LTR MaLR 0 365 1 1353 194 95 0 chr9 15796531 15796814 -126474630 - MLT1A1-int LTR MaLR -6 1729 1420 1830 174 22 3 chr9 15796851 15797173 -126474271 - MLT2B1 LTR ERVL -192 328 1 650 211 58 23 chr9 15797182 15797353 -126474091 - MIR SINE MIR -68 194 18 386 292 94 21 chr9 15800599 15800977 -126470467 - L1MC4a LINE L1 -302 5819 5529 269 276 114 9 chr9 15801626 15801731 -126469713 + MIR SINE MIR 30 145 -63 362 126 0 17 chr9 15801919 15801985 -126469459 + L1MB7 LINE L1 6049 6113 -71 234 242 0 0 chr9 15801988 15802054 -126469390 + GA-rich Low_complexity Low_complexity 1 66 0 192 40 0 0 chr9 15802069 15802094 -126469350 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 222 326 130 22 chr9 15802137 15802367 -126469077 - MIR SINE MIR -6 256 2 1144 254 37 59 chr9 15803064 15803220 -126468224 + LTR16C LTR ERVL 96 254 -237 180 0 0 0 chr9 15803220 15803240 -126468204 + (TG)n Simple_repeat Simple_repeat 2 21 0 * 321 26 0 0 chr9 15803239 15803277 -126468167 + (TA)n Simple_repeat Simple_repeat 1 38 0 1144 254 37 59 chr9 15803240 15803525 -126467919 + LTR16C LTR ERVL 254 491 0 183 120 0 0 chr9 15804003 15804028 -126467416 + L3b LINE CR1 1531 1555 -28 21 0 0 0 chr9 15805255 15805276 -126466168 + AT_rich Low_complexity Low_complexity 1 21 0 429 289 224 10 chr9 15805527 15805728 -126465716 + MIR SINE MIR 11 254 -8 366 218 57 65 chr9 15806190 15806314 -126465130 - L2 LINE L2 0 3313 3191 180 333 0 0 chr9 15806732 15806786 -126464658 - L2 LINE L2 -1 3312 3259 1283 209 57 43 chr9 15806851 15807038 -126464406 - MLT1A2 LTR MaLR 0 374 191 240 35 0 0 chr9 15807038 15807067 -126464377 + (GA)n Simple_repeat Simple_repeat 2 30 0 1283 209 57 43 chr9 15807067 15807248 -126464196 - MLT1A2 LTR MaLR -183 191 1 357 289 26 158 chr9 15807543 15807636 -126463808 - L2 LINE L2 0 3272 3168 2257 124 0 0 chr9 15807636 15807943 -126463501 + AluSx SINE Alu 3 309 -3 357 289 26 158 chr9 15807943 15808268 -126463176 - L2 LINE L2 -104 3168 2909 370 301 71 68 chr9 15808297 15808606 -126462838 - L2 LINE L2 -1153 2161 1852 240 35 0 0 chr9 15808738 15808767 -126462677 + (CA)n Simple_repeat Simple_repeat 2 30 0 326 257 46 0 chr9 15808826 15808935 -126462509 + L1ME4a LINE L1 6005 6118 -3 1649 178 52 14 chr9 15810133 15810420 -126461024 + AluJo SINE Alu 1 298 -14 230 339 16 48 chr9 15810420 15810544 -126460900 + MER5A DNA MER1_type 44 163 -26 235 314 85 8 chr9 15811000 15811118 -126460326 + MIR SINE MIR 122 248 -14 25 95 0 0 chr9 15811782 15811856 -126459588 + AT_rich Low_complexity Low_complexity 1 74 0 545 268 131 58 chr9 15811863 15812176 -126459268 - L1MC4a LINE L1 -1942 5866 5531 933 273 121 13 chr9 15812333 15813089 -126458355 + L1ME LINE L1 4968 5818 -348 633 291 138 0 chr9 15813099 15813288 -126458156 + MIR SINE MIR 28 242 -20 2647 119 19 21 chr9 15814057 15814123 -126457321 - MSTA LTR MaLR -1 427 362 2329 79 0 0 chr9 15814123 15814468 -126456976 + AluY SINE Alu 1 311 0 2647 119 19 21 chr9 15814468 15814829 -126456615 - MSTA LTR MaLR -66 362 1 214 262 243 0 chr9 15814901 15815008 -126456436 + MIR SINE MIR 14 146 -116 196 241 0 69 chr9 15815109 15815167 -126456277 - MIR SINE MIR -136 72 19 748 260 78 17 chr9 15817915 15818146 -126453298 + MIR SINE MIR 5 249 -13 1709 169 30 30 chr9 15818166 15818527 -126452917 - MER46B DNA MER2_type 0 236 1 420 218 129 67 chr9 15819927 15820120 -126451324 + MLT1K LTR MaLR 374 578 -10 361 258 114 53 chr9 15820144 15820276 -126451168 - MIR3 SINE MIR -64 144 5 603 102 0 0 chr9 15820806 15820894 -126450550 + (TCCC)n Simple_repeat Simple_repeat 4 91 0 329 235 122 10 chr9 15820902 15821000 -126450444 - L2 LINE L2 -10 3262 3154 516 176 0 0 chr9 15821030 15821132 -126450312 + (TG)n Simple_repeat Simple_repeat 1 102 0 324 344 19 17 chr9 15821592 15821782 -126449662 - MIR SINE MIR -50 212 22 194 288 188 12 chr9 15822099 15822179 -126449265 + L2 LINE L2 2826 2919 -395 * 679 236 14 0 chr9 15822171 15822319 -126449125 - MIR SINE MIR -100 162 13 185 103 0 0 chr9 15822709 15822738 -126448706 + L2 LINE L2 3285 3313 0 225 268 98 24 chr9 15823530 15823612 -126447832 + MIR SINE MIR 116 203 -59 897 265 57 16 chr9 15824093 15824410 -126447034 - MER46C DNA MER2_type -3 335 6 31 26 0 0 chr9 15824741 15824779 -126446665 + AT_rich Low_complexity Low_complexity 1 38 0 7710 169 14 47 chr9 15824781 15827435 -126444009 - L1PA16 LINE L1 -16 6150 3614 677 197 94 18 chr9 15827966 15828189 -126443255 + MER69 DNA AcHobo 2153 2392 -134 187 205 77 0 chr9 15828360 15828399 -126443045 - L2 LINE L2 -26 3246 3205 22 80 0 0 chr9 15829069 15829119 -126442325 + AT_rich Low_complexity Low_complexity 1 50 0 363 73 0 0 chr9 15829981 15830036 -126441408 + (CA)n Simple_repeat Simple_repeat 2 56 0 249 203 40 0 chr9 15830119 15830193 -126441251 + (TA)n Simple_repeat Simple_repeat 1 77 0 203 224 0 15 chr9 15830233 15830300 -126441144 + (TATATG)n Simple_repeat Simple_repeat 5 70 0 447 254 61 18 chr9 15831123 15831237 -126440207 - L2 LINE L2 -5 3308 3190 2224 105 3 0 chr9 15831951 15832237 -126439207 - AluSx SINE Alu -25 287 1 373 139 0 105 chr9 15833099 15833185 -126438259 - L1ME LINE L1 -515 5606 5530 29 60 0 0 chr9 15833427 15833477 -126437967 + AT_rich Low_complexity Low_complexity 1 50 0 517 332 100 17 chr9 15833480 15833721 -126437723 - MIR SINE MIR 0 262 2 449 264 194 38 chr9 15833756 15834154 -126437290 - L1M4 LINE L1 -1310 4836 4377 328 298 0 11 chr9 15834741 15834835 -126436609 + CT-rich Low_complexity Low_complexity 4 96 0 218 176 0 20 chr9 15835371 15835389 -126436055 + A-rich Low_complexity Low_complexity 2 19 -32 2416 107 0 0 chr9 15835389 15835698 -126435746 + AluSg SINE Alu 1 309 -1 218 176 0 20 chr9 15835698 15835730 -126435714 + A-rich Low_complexity Low_complexity 19 51 0 686 263 58 5 chr9 15835796 15835986 -126435458 + MIR SINE MIR 48 247 -15 333 118 0 0 chr9 15836341 15836392 -126435052 + (CA)n Simple_repeat Simple_repeat 2 52 0 437 264 50 57 chr9 15836832 15836972 -126434472 + MER5B DNA MER1_type 40 178 0 265 342 128 11 chr9 15837352 15837539 -126433905 - MIR SINE MIR -21 241 33 266 216 162 42 chr9 15837543 15837710 -126433734 + MER5A DNA MER1_type 3 189 0 361 265 29 10 chr9 15837776 15837878 -126433566 - MER5A DNA MER1_type -77 112 9 22 0 0 0 chr9 15838291 15838313 -126433131 + AT_rich Low_complexity Low_complexity 1 22 0 237 312 11 32 chr9 15839834 15839927 -126431517 + L2 LINE L2 2893 2983 -289 217 259 35 0 chr9 15840026 15840084 -126431360 + L2 LINE L2 3178 3237 -76 832 295 34 4 chr9 15841704 15841938 -126429506 - MIR SINE MIR -19 243 3 544 250 33 11 chr9 15842717 15842897 -126428547 - MER112 DNA MER1_type -5 255 72 590 273 32 43 chr9 15843448 15843635 -126427809 + MIR SINE MIR 47 231 -31 217 300 170 10 chr9 15846138 15846238 -126425206 - L2 LINE L2 -8 3305 3190 191 219 0 0 chr9 15846963 15847004 -126424440 - MIR SINE MIR -62 200 160 266 373 39 0 chr9 15847429 15847582 -126423862 + MIR SINE MIR 70 228 -34 184 333 30 0 chr9 15848406 15848472 -126422972 - L2 LINE L2 -6 3266 3199 230 273 15 15 chr9 15849656 15849722 -126421722 + L2 LINE L2 3243 3308 -5 237 65 0 0 chr9 15852443 15852474 -126418970 + (GA)n Simple_repeat Simple_repeat 1 31 0 195 204 0 0 chr9 15852938 15852982 -126418462 + A-rich Low_complexity Low_complexity 1 44 0 216 196 22 0 chr9 15854446 15854492 -126416952 + GA-rich Low_complexity Low_complexity 3 49 0 183 80 0 0 chr9 15855724 15855749 -126415695 + (T)n Simple_repeat Simple_repeat 1 25 0 285 333 56 0 chr9 15855967 15856057 -126415387 - L2 LINE L2 -22 3250 3156 293 233 27 14 chr9 15857470 15857543 -126413901 + MIR SINE MIR 46 119 -143 210 309 10 10 chr9 15857631 15857728 -126413716 + GA-rich Low_complexity Low_complexity 2 98 0 586 265 65 25 chr9 15858040 15858228 -126413216 + MIR SINE MIR 1 199 -63 546 244 0 0 chr9 15858228 15858363 -126413081 + L1MA10 LINE L1 6198 6332 -2 586 265 65 25 chr9 15858363 15858374 -126413070 + MIR SINE MIR 199 208 -54 182 318 171 47 chr9 15858427 15858556 -126412888 - MIR3 SINE MIR -45 163 19 276 175 31 82 chr9 15860337 15860434 -126411010 + L1MD2 LINE L1 6268 6359 0 429 267 121 9 chr9 15861229 15861345 -126410099 - L2 LINE L2 -1 3271 3143 1763 50 0 0 chr9 15861478 15861679 -126409765 + AluY SINE Alu 1 201 -110 3143 251 37 21 chr9 15861679 15862895 -126408549 - L1M4 LINE L1 -1894 4252 3018 279 356 37 7 chr9 15862947 15863082 -126408362 - L3 LINE CR1 -239 1338 1200 195 146 24 49 chr9 15863395 15863436 -126408008 + MIR SINE MIR 36 75 -133 289 333 32 32 chr9 15864190 15864316 -126407128 + MIR3 SINE MIR 13 138 -70 203 306 0 28 chr9 15864973 15865045 -126406399 + CT-rich Low_complexity Low_complexity 1 70 0 383 293 190 19 chr9 15865387 15865592 -126405852 - MIR SINE MIR 0 262 23 252 224 75 0 chr9 15865790 15865857 -126405587 + L2 LINE L2 3242 3313 0 825 84 15 0 chr9 15867653 15867784 -126403660 + L1MA5A LINE L1 6164 6296 -1 24 0 0 0 chr9 15867911 15867935 -126403509 + AT_rich Low_complexity Low_complexity 1 24 0 230 279 49 16 chr9 15868008 15868130 -126403314 - L1ME LINE L1 -203 5918 5793 2232 165 70 5 chr9 15868130 15868530 -126402914 - MSTB LTR MaLR 0 426 1 8117 166 67 19 chr9 15868530 15870105 -126401339 - MSTB-int LTR MaLR 0 1651 1 2048 151 18 87 chr9 15870107 15870558 -126400886 - MSTB LTR MaLR -6 420 1 434 300 88 9 chr9 15870751 15870978 -126400466 - MLT1H LTR MaLR -244 305 61 319 286 149 30 chr9 15871031 15871199 -126400245 - L1ME LINE L1 -410 5711 5524 201 39 0 0 chr9 15871257 15871283 -126400161 + (TGAA)n Simple_repeat Simple_repeat 3 28 0 596 279 81 63 chr9 15871551 15872118 -126399326 - L1MC4a LINE L1 -1978 5830 5254 1056 296 98 42 chr9 15872126 15872904 -126398540 - L1MC4a LINE L1 -941 5205 4385 1485 126 79 7 chr9 15873178 15873455 -126397989 - L1MB3 LINE L1 -3 6180 5884 22 0 0 0 chr9 15873572 15873594 -126397850 + AT_rich Low_complexity Low_complexity 1 22 0 204 125 0 0 chr9 15874002 15874034 -126397410 + (A)n Simple_repeat Simple_repeat 1 32 0 221 234 31 31 chr9 15874812 15874876 -126396568 + L2 LINE L2 3204 3267 -5 331 286 246 14 chr9 15874886 15875106 -126396338 + L3 LINE CR1 389 659 -918 282 349 9 0 chr9 15875665 15875771 -126395673 - L2 LINE L2 -4 3268 3162 187 280 40 13 chr9 15875776 15875851 -126395593 + L3 LINE CR1 676 752 -825 1585 158 76 10 chr9 15875859 15876150 -126395294 - AluJb SINE Alu -2 310 1 202 216 0 0 chr9 15876577 15876614 -126394830 + L2 LINE L2 3259 3295 -18 330 286 77 62 chr9 15877523 15877896 -126393548 - L2 LINE L2 -1 3271 2821 413 275 131 6 chr9 15877957 15878117 -126393327 + MIR SINE MIR 4 183 -79 203 156 0 0 chr9 15878217 15878249 -126393195 + (CAT)n Simple_repeat Simple_repeat 3 34 0 1705 181 0 13 chr9 15878277 15878591 -126392853 - AluJb SINE Alu 0 312 3 983 249 93 71 chr9 15878905 15879484 -126391960 + HAL1 LINE L1 1915 2506 -1 215 331 152 43 chr9 15879637 15880540 -126390904 - L2 LINE L2 -575 2739 1739 22 0 0 0 chr9 15881055 15881077 -126390367 + AT_rich Low_complexity Low_complexity 1 22 0 491 0 0 17 chr9 15881119 15881179 -126390265 + (TAGA)n Simple_repeat Simple_repeat 2 60 0 224 296 57 38 chr9 15881301 15881460 -126389984 - L2 LINE L2 -1635 1679 1518 2595 88 36 6 chr9 15881468 15881832 -126389612 + THE1C LTR MaLR 1 375 0 268 229 29 14 chr9 15882182 15882252 -126389192 - MER58 DNA MER1_type -5 2415 2345 1975 140 20 11 chr9 15882261 15882617 -126388827 + L1MB2 LINE L1 5810 6168 -3 1384 124 76 0 chr9 15882874 15883084 -126388360 + MER30 DNA MER1_type 5 230 0 1029 209 73 10 chr9 15884405 15884707 -126386737 + MER33 DNA MER1_type 3 323 -1 243 0 0 0 chr9 15886658 15886685 -126384759 + (CA)n Simple_repeat Simple_repeat 1 27 0 366 243 68 81 chr9 15887478 15887626 -126383818 - MIR3 SINE MIR -11 197 52 1039 224 175 38 chr9 15887699 15888168 -126383276 - MLT1H LTR MaLR -3 546 14 181 294 56 95 chr9 15888192 15888318 -126383126 + L2 LINE L2 2854 2974 -339 1137 286 83 36 chr9 15888412 15889017 -126382427 + HAL1 LINE L1 50 686 -1821 2204 120 3 0 chr9 15889017 15889325 -126382119 + AluSx SINE Alu 2 310 -2 234 136 0 0 chr9 15889336 15889380 -126382064 + (GAAAA)n Simple_repeat Simple_repeat 5 48 0 369 277 86 121 chr9 15889380 15889636 -126381808 + HAL1 LINE L1 667 913 -1594 226 306 82 36 chr9 15889651 15889847 -126381597 + HAL1 LINE L1 2230 2434 -73 237 213 21 0 chr9 15890418 15890465 -126380979 + GA-rich Low_complexity Low_complexity 3 50 0 2268 108 0 0 chr9 15890737 15891034 -126380410 - AluSq SINE Alu -16 297 1 9810 93 5 5 chr9 15891332 15892814 -126378630 - L1PA7 LINE L1 -2113 4033 2551 9855 79 3 0 chr9 15892814 15894925 -126376519 + L1PA7 LINE L1 4041 6154 0 219 283 67 0 chr9 15895166 15895226 -126376218 + L2 LINE L2 3208 3271 -1 194 226 172 43 chr9 15895521 15895614 -126375830 + MIR SINE MIR 151 255 -7 1846 167 0 0 chr9 15895914 15896196 -126375248 - AluJb SINE Alu -30 282 1 273 219 89 32 chr9 15896566 15896689 -126374755 + L1ME4a LINE L1 5946 6075 -46 525 16 0 0 chr9 15897007 15897069 -126374375 + (TC)n Simple_repeat Simple_repeat 2 63 0 324 70 0 0 chr9 15897068 15897111 -126374333 + (TG)n Simple_repeat Simple_repeat 2 44 0 * 2525 58 3 3 chr9 15897704 15898013 -126373431 - AluY SINE Alu -2 309 1 189 419 65 0 chr9 15898433 15898557 -126372887 + L2 LINE L2 2069 2200 -1114 302 329 80 58 chr9 15898980 15899117 -126372327 + L1M2 LINE L1 1045 1184 -5665 13792 202 40 24 chr9 15899117 15899832 -126371612 + L1MA4 LINE L1 818 1520 -5482 369 0 0 0 chr9 15899832 15899873 -126371571 + (TA)n Simple_repeat Simple_repeat 1 41 0 13792 202 40 24 chr9 15899873 15901697 -126369747 + L1MA4 LINE L1 1520 3313 -3689 216 0 0 0 chr9 15901697 15901721 -126369723 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2137 102 0 0 chr9 15901725 15902000 -126369444 - AluSx SINE Alu -37 275 1 13792 202 40 24 chr9 15902000 15903315 -126368129 + L1MA4 LINE L1 3315 4607 -2395 2335 93 0 3 chr9 15903315 15903617 -126367827 - AluSg SINE Alu -9 301 1 13792 202 40 24 chr9 15903617 15905745 -126365699 + L1MA4 LINE L1 4607 6991 -11 207 269 0 30 chr9 15905779 15905846 -126365598 + L2 LINE L2 2715 2779 -535 223 284 112 26 chr9 15905973 15906089 -126365355 + L2 LINE L2 2935 3060 -212 231 268 146 0 chr9 15906180 15906262 -126365182 + MIR SINE MIR 40 133 -75 419 292 211 10 chr9 15906285 15906494 -126364950 + MIR SINE MIR 3 253 -9 225 338 147 15 chr9 15906833 15906969 -126364475 + MIR SINE MIR 106 259 -3 189 333 144 0 chr9 15906946 15907036 -126364408 + L2 LINE L2 3202 3304 -9 * 26 0 0 0 chr9 15907156 15907182 -126364262 + AT_rich Low_complexity Low_complexity 1 26 0 840 232 121 0 chr9 15907422 15907646 -126363798 - MIR SINE MIR 0 262 12 488 288 204 0 chr9 15909063 15909254 -126362190 + MIR SINE MIR 31 260 -2 2593 53 0 0 chr9 15910240 15910542 -126360902 + AluSq SINE Alu 1 302 -11 213 121 0 0 chr9 15910750 15910783 -126360661 + (ATG)n Simple_repeat Simple_repeat 2 34 0 2924 281 116 22 chr9 15911313 15913242 -126358202 + L1MEc LINE L1 88 2198 -4198 1095 189 116 61 chr9 15913242 15913570 -126357874 + MLT1A1 LTR MaLR 3 348 -17 260 207 24 12 chr9 15913574 15913656 -126357788 + L1MEc LINE L1 2191 2273 -4123 342 282 48 27 chr9 15913667 15913855 -126357589 + Charlie1 DNA MER1_type 1465 1656 -1105 812 275 49 5 chr9 15913859 15914382 -126357062 - L1MEc LINE L1 -3764 2471 1948 23 33 0 0 chr9 15914390 15914420 -126357024 + AT_rich Low_complexity Low_complexity 1 30 0 2720 243 43 17 chr9 15914500 15915515 -126355929 + L1MEc LINE L1 2493 3534 -2681 2764 213 79 15 chr9 15916256 15917662 -126353782 + L1MB7 LINE L1 4630 6152 -32 2012 174 74 71 chr9 15917660 15918284 -126353160 + L1ME LINE L1 5204 5819 -347 * 6572 225 149 5 chr9 15918828 15920767 -126350677 + L1M2b LINE L1 1 2232 -4977 27 0 0 0 chr9 15920767 15920794 -126350650 + AT_rich Low_complexity Low_complexity 1 27 0 1671 158 0 40 chr9 15920797 15921100 -126350344 - AluJb SINE Alu -17 295 5 258 100 25 0 chr9 15921146 15921186 -126350258 + THE1A LTR MaLR 195 235 -120 4687 107 0 5 chr9 15921190 15921817 -126349627 + L1PA7 LINE L1 4 627 -5834 11201 94 6 1 chr9 15921818 15924201 -126347243 + L1PA7 LINE L1 4076 6469 0 2616 164 51 15 chr9 15924201 15924750 -126346694 + L1M2b LINE L1 2260 2828 -4381 897 175 6 35 chr9 15924818 15924989 -126346455 + FRAM SINE Alu 1 166 0 211 212 0 45 chr9 15925234 15925300 -126346144 + C-rich Low_complexity Low_complexity 3 65 0 23 0 0 0 chr9 15925501 15925524 -126345920 + AT_rich Low_complexity Low_complexity 1 23 0 311 343 73 56 chr9 15926341 15926519 -126344925 + MIR3 SINE MIR 13 193 -15 436 149 53 75 chr9 15928548 15928642 -126342802 + AluJb SINE Alu 198 289 -23 231 238 36 0 chr9 15928730 15928814 -126342630 + (TAG)n Simple_repeat Simple_repeat 3 89 0 1179 163 13 96 chr9 15929352 15929538 -126341906 - AluJo SINE Alu -11 301 150 2301 97 0 0 chr9 15929538 15929838 -126341606 - AluSx SINE Alu -12 300 1 1179 163 13 96 chr9 15929838 15929964 -126341480 - AluJo SINE Alu -162 150 15 290 247 65 21 chr9 15930146 15930239 -126341205 - MIR SINE MIR -70 192 96 1881 131 0 34 chr9 15930718 15931029 -126340415 - AluSx SINE Alu 0 301 1 997 212 0 0 chr9 15932178 15932367 -126339077 + MER5A DNA MER1_type 1 189 0 387 127 0 0 chr9 15933870 15933933 -126337511 + (CA)n Simple_repeat Simple_repeat 2 64 0 26 30 0 0 chr9 15933938 15933971 -126337473 + AT_rich Low_complexity Low_complexity 1 33 0 687 197 41 0 chr9 15934838 15934985 -126336459 + LTR65 LTR ERV1 18 170 -499 699 236 26 73 chr9 15936558 15936605 -126334839 - MER58A DNA MER1_type -2198 222 174 2139 104 14 0 chr9 15936605 15936908 -126334536 - AluSx SINE Alu 0 307 1 699 236 26 73 chr9 15936908 15937092 -126334352 - MER58A DNA MER1_type -2246 174 1 623 250 110 15 chr9 15937141 15937341 -126334103 + MIR SINE MIR 34 252 -10 323 342 125 47 chr9 15937577 15938390 -126333054 + L2 LINE L2 2332 3268 -4 381 248 13 129 chr9 15940633 15940751 -126330693 + L1MC4 LINE L1 7743 7873 -169 2235 90 0 17 chr9 15940751 15941050 -126330394 + AluSg SINE Alu 1 294 -16 381 248 13 129 chr9 15941050 15941233 -126330211 + L1MC4 LINE L1 7873 8009 -33 226 333 0 0 chr9 15941264 15941330 -126330114 + MER5B DNA MER1_type 50 115 -63 2501 236 39 55 chr9 15941471 15942266 -126329178 + L1M3e LINE L1 7 813 -6294 2067 132 0 0 chr9 15942266 15942555 -126328889 + AluSq SINE Alu 1 289 -24 2501 236 39 55 chr9 15942555 15943525 -126327919 + L1M3e LINE L1 813 2923 -4184 41762 34 22 21 chr9 15943625 15949520 -126321924 - L1PA2 LINE L1 -250 5905 1 213 154 0 0 chr9 15949955 15949994 -126321450 + A-rich Low_complexity Low_complexity 1 39 0 191 200 0 67 chr9 15950113 15950158 -126321286 - L2 LINE L2 -5 3267 3226 * 209 227 182 36 chr9 15950127 15950237 -126321207 - MIR SINE MIR -10 252 127 248 302 81 0 chr9 15951556 15951642 -126319802 + MIR SINE MIR 167 259 -3 237 271 0 14 chr9 15952058 15952128 -126319316 + (TA)n Simple_repeat Simple_repeat 1 69 0 2228 105 0 22 chr9 15953118 15953432 -126318012 - AluSx SINE Alu -5 307 1 24 32 0 0 chr9 15955113 15955144 -126316300 + AT_rich Low_complexity Low_complexity 1 31 0 342 0 0 0 chr9 15956187 15956225 -126315219 + (TG)n Simple_repeat Simple_repeat 2 39 0 258 132 0 0 chr9 15956335 15956388 -126315056 + (GA)n Simple_repeat Simple_repeat 2 54 0 28 0 0 0 chr9 15957966 15957994 -126313450 + AT_rich Low_complexity Low_complexity 1 28 0 249 167 0 33 chr9 15958323 15958383 -126313061 - L1ME3 LINE L1 -1 6161 6104 26 30 0 0 chr9 15958541 15958574 -126312870 + AT_rich Low_complexity Low_complexity 1 33 0 1306 178 9 33 chr9 15958975 15959091 -126312353 - L1 LINE L1 -840 5306 5189 1651 161 0 58 chr9 15959091 15959402 -126312042 - AluJo SINE Alu -19 293 1 1306 178 9 33 chr9 15959402 15959617 -126311827 - L1 LINE L1 -957 5189 4983 24 53 0 0 chr9 15962175 15962213 -126309231 + AT_rich Low_complexity Low_complexity 1 38 0 23 0 0 0 chr9 15962926 15962949 -126308495 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr9 15964761 15964784 -126306660 + AT_rich Low_complexity Low_complexity 1 23 0 4367 163 52 30 chr9 15967506 15968647 -126302797 - L1MB1 LINE L1 0 6168 4991 1286 248 118 40 chr9 15968951 15969500 -126301944 + MLT1G1 LTR MaLR 4 595 0 564 270 28 24 chr9 15969739 15969950 -126301494 + L1ME LINE L1 5563 5774 -347 606 156 8 2 chr9 15969983 15970226 -126301218 + AluJ SINE Alu 5 292 -20 268 329 0 0 chr9 15970595 15970668 -126300776 - MLT1F LTR MaLR -469 73 1 634 149 75 8 chr9 15972015 15972149 -126299295 + L1MB8 LINE L1 5547 5689 -489 10555 182 26 19 chr9 15972152 15974187 -126297257 + L1M2 LINE L1 6 2054 -4795 1311 186 129 0 chr9 15974451 15974730 -126296714 + MER58B DNA MER1_type 11 325 -16 635 142 25 8 chr9 15975833 15975953 -126295491 + L1MB8 LINE L1 6045 6166 -12 22 70 0 0 chr9 15976439 15976482 -126294962 + AT_rich Low_complexity Low_complexity 1 43 0 27 0 0 0 chr9 15977060 15977087 -126294357 + AT_rich Low_complexity Low_complexity 1 27 0 22 56 0 0 chr9 15977248 15977284 -126294160 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr9 15977545 15977567 -126293877 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr9 15977827 15977856 -126293588 + AT_rich Low_complexity Low_complexity 1 29 0 476 194 73 16 chr9 15978796 15978920 -126292524 + L1ME3 LINE L1 5589 5719 -443 737 198 36 44 chr9 15978928 15979130 -126292314 + L1ME3 LINE L1 5957 6161 -9 298 283 12 30 chr9 15979483 15979629 -126291815 + MER5A DNA MER1_type 1 143 -35 570 356 47 47 chr9 15979711 15980051 -126291393 - L2 LINE L2 0 3272 2933 225 333 25 0 chr9 15980353 15980434 -126291010 - L2 LINE L2 -792 2522 2440 818 272 115 59 chr9 15982614 15983281 -126288163 + L1ME2 LINE L1 5448 6151 -13 317 282 65 51 chr9 15983313 15983529 -126287915 + L1MC4 LINE L1 7822 8040 -2 25 0 0 0 chr9 15983866 15983891 -126287553 + AT_rich Low_complexity Low_complexity 1 25 0 645 189 76 80 chr9 15985222 15985363 -126286081 + MER112 DNA MER1_type 18 159 -101 707 179 126 0 chr9 15985363 15985514 -126285930 - FAM SINE Alu -2 173 4 645 189 76 80 chr9 15985514 15985610 -126285834 + MER112 DNA MER1_type 159 254 -6 304 350 10 10 chr9 15985611 15985714 -126285730 - L2 LINE L2 -517 2797 2695 252 0 0 0 chr9 15985864 15985892 -126285552 + (TG)n Simple_repeat Simple_repeat 2 29 0 28410 50 2 4 chr9 15985947 15990348 -126281096 + L1PA7 LINE L1 1761 6154 0 218 292 62 0 chr9 15990584 15990649 -126280795 + L2 LINE L2 3203 3271 -1 205 226 172 43 chr9 15990944 15991037 -126280407 + MIR SINE MIR 151 255 -7 233 303 149 46 chr9 15991041 15991216 -126280228 - MER117 DNA MER1_type -1 196 4 1810 167 0 0 chr9 15991337 15991619 -126279825 - AluJb SINE Alu -30 282 1 320 204 144 15 chr9 15991989 15992121 -126279323 + L1ME4a LINE L1 5946 6094 -27 2277 26 7 4 chr9 15992706 15992978 -126278466 + AluY SINE Alu 39 311 0 1102 215 9 14 chr9 15993726 15993945 -126277499 + MER58A DNA MER1_type 7 224 0 356 268 229 16 chr9 15993963 15994146 -126277298 + MIR SINE MIR 31 252 -10 789 203 85 85 chr9 15994292 15994573 -126276871 - L1M4 LINE L1 -1133 5013 4733 14401 142 25 8 chr9 15994645 15994669 -126276775 + Tigger1 DNA MER2_type 26 48 -2370 291 28 0 0 chr9 15994669 15994705 -126276739 + (TG)n Simple_repeat Simple_repeat 2 37 0 14401 142 25 8 chr9 15994705 15996691 -126274753 + Tigger1 DNA MER2_type 48 2083 -335 2100 109 3 0 chr9 15996691 15996984 -126274460 - AluSc SINE Alu -6 303 10 14401 142 25 8 chr9 15996984 15997326 -126274118 + Tigger1 DNA MER2_type 2083 2418 0 24 53 0 0 chr9 15997927 15997965 -126273479 + AT_rich Low_complexity Low_complexity 1 38 0 22 56 0 0 chr9 16000101 16000137 -126271307 + AT_rich Low_complexity Low_complexity 1 36 0 242 203 81 27 chr9 16000780 16000854 -126270590 + L2 LINE L2 3149 3226 -87 515 301 78 38 chr9 16001135 16001689 -126269755 - L1M4 LINE L1 -4848 1694 1219 391 228 51 0 chr9 16002447 16002526 -126268918 + MER91C DNA MER1_type 34 116 -24 342 302 39 8 chr9 16004671 16004795 -126266649 - MIR SINE MIR -65 143 37 29 0 0 0 chr9 16004890 16004919 -126266525 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr9 16005038 16005060 -126266384 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr9 16006926 16006957 -126264487 + AT_rich Low_complexity Low_complexity 1 31 0 1110 178 33 24 chr9 16007020 16007233 -126264211 + MER20 DNA MER1_type 1 215 -4 26 74 0 0 chr9 16007370 16007424 -126264020 + AT_rich Low_complexity Low_complexity 1 54 0 2081 286 202 17 chr9 16007437 16008499 -126262945 - L2 LINE L2 0 3313 2043 857 295 61 14 chr9 16008504 16008863 -126262581 - L2 LINE L2 -2225 1089 714 1302 263 143 18 chr9 16009226 16009660 -126261784 - L2 LINE L2 0 3313 2826 1460 273 89 30 chr9 16009930 16011010 -126260434 - L1ME3A LINE L1 -284 5886 4735 742 188 35 14 chr9 16011092 16011236 -126260208 - MER106B DNA MER1_type -912 147 1 249 224 0 0 chr9 16011357 16011415 -126260029 + (TATATG)n Simple_repeat Simple_repeat 2 59 0 1585 269 157 51 chr9 16011461 16012809 -126258635 + L1M4 LINE L1 3787 5277 -869 1972 101 7 37 chr9 16012954 16013252 -126258192 - AluSx SINE Alu -23 289 1 2004 158 15 40 chr9 16013367 16013767 -126257677 - MLT1B LTR MaLR 0 390 1 210 384 80 8 chr9 16015532 16015657 -126255787 + L2 LINE L2 3138 3271 -1 240 111 0 0 chr9 16015864 16015900 -126255544 + (T)n Simple_repeat Simple_repeat 1 36 0 5914 154 40 17 chr9 16016559 16018597 -126252847 - L1MA4A LINE L1 -5 6298 4222 233 246 0 0 chr9 16018613 16018674 -126252770 - L1MA4A LINE L1 -2132 4014 3954 245 293 67 0 chr9 16018830 16018905 -126252539 - Tigger5 DNA MER2_type -7 2316 2237 436 230 11 0 chr9 16018916 16019003 -126252441 + Tigger5 DNA MER2_type 1 88 -2235 302 218 0 0 chr9 16019061 16019116 -126252328 - Tigger5 DNA MER2_type -2267 56 2 9812 204 24 53 chr9 16019117 16021346 -126250098 + L1MA8 LINE L1 3093 4891 -2674 3900 92 29 2 chr9 16021346 16021897 -126249547 + L1PA10 LINE L1 5589 6160 -8 9812 204 24 53 chr9 16021897 16023682 -126247762 + L1MA8 LINE L1 4891 6727 -838 1392 211 11 8 chr9 16023683 16023944 -126247500 + Tigger7 DNA MER2_type 2 263 -470 516 198 0 10 chr9 16023949 16024045 -126247399 + Tigger7 DNA MER2_type 2397 2491 0 4641 166 45 18 chr9 16024045 16025001 -126246443 + L1MA8 LINE L1 6726 7707 -3 286 247 101 107 chr9 16025263 16025441 -126246003 - MER5B DNA MER1_type 0 178 2 191 337 133 0 chr9 16025485 16025583 -126245861 + L2 LINE L2 3162 3272 0 207 277 0 0 chr9 16026535 16026582 -126244862 + MIR3 SINE MIR 139 185 -23 2058 122 27 3 chr9 16026772 16027068 -126244376 + AluSx SINE Alu 1 303 -9 189 147 0 0 chr9 16027250 16027284 -126244160 + (TATG)n Simple_repeat Simple_repeat 3 36 0 2069 124 0 0 chr9 16027451 16027759 -126243685 + AluSx SINE Alu 1 308 0 776 271 58 19 chr9 16027917 16028175 -126243269 + MLT1L LTR MaLR 343 610 -5 224 238 12 0 chr9 16028262 16028346 -126243098 + (TA)n Simple_repeat Simple_repeat 1 85 0 496 307 193 5 chr9 16028367 16028585 -126242859 + MIR SINE MIR 1 259 -3 337 325 116 47 chr9 16028597 16028917 -126242527 - L2 LINE L2 -1 3312 2971 305 318 8 76 chr9 16028952 16029084 -126242360 + L2 LINE L2 3150 3272 0 313 304 20 10 chr9 16029242 16029344 -126242100 + L2 LINE L2 3178 3280 -33 541 266 52 31 chr9 16029667 16029716 -126241728 + L2 LINE L2 3113 3159 -154 189 74 0 0 chr9 16029716 16029743 -126241701 + (ATTG)n Simple_repeat Simple_repeat 2 28 0 541 266 52 31 chr9 16029743 16029885 -126241559 + L2 LINE L2 3159 3308 -5 242 242 137 32 chr9 16030258 16030353 -126241091 - MIR SINE MIR -45 217 113 460 276 66 7 chr9 16030598 16030750 -126240694 + MIR SINE MIR 86 246 -16 262 129 32 16 chr9 16030788 16030850 -126240594 - MER116 DNA Mariner 0 80 18 26 30 0 0 chr9 16031365 16031398 -126240046 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr9 16031450 16031471 -126239973 + AT_rich Low_complexity Low_complexity 1 21 0 771 121 0 0 chr9 16032302 16032442 -126239002 + (TTCC)n Simple_repeat Simple_repeat 3 142 0 425 340 35 0 chr9 16032544 16032688 -126238756 - MIR3 SINE MIR -10 198 50 223 222 0 0 chr9 16033523 16033568 -126237876 + L2 LINE L2 3261 3305 -8 423 0 0 0 chr9 16035937 16035984 -126235460 + (CA)n Simple_repeat Simple_repeat 1 47 0 1401 186 57 18 chr9 16037057 16037337 -126234107 - AluJo SINE Alu -15 297 7 222 355 11 32 chr9 16037674 16037767 -126233677 - L2 LINE L2 -36 3236 3146 186 164 194 15 chr9 16039382 16039449 -126231995 - L2 LINE L2 0 3272 3194 2246 129 0 0 chr9 16039540 16039851 -126231593 + AluSx SINE Alu 1 311 -1 205 292 163 34 chr9 16040965 16041174 -126230270 + L2 LINE L2 688 923 -2391 * 265 251 133 59 chr9 16041147 16041240 -126230204 + L2 LINE L2 3096 3181 -132 2474 63 0 3 chr9 16041240 16041541 -126229903 - AluY SINE Alu -11 300 1 265 251 133 59 chr9 16041541 16041650 -126229794 + L2 LINE L2 3181 3313 0 410 331 64 67 chr9 16041951 16042045 -126229399 + L2 LINE L2 1023 1116 -2198 2037 130 0 0 chr9 16042045 16042346 -126229098 + AluSx SINE Alu 3 303 -9 410 331 64 67 chr9 16042346 16042686 -126228758 + L2 LINE L2 1116 1456 -1858 2229 218 21 43 chr9 16045029 16045372 -126226072 - L1M4 LINE L1 -3339 2807 2481 2059 109 11 3 chr9 16045372 16045691 -126225753 + AluSq SINE Alu 1 321 0 2229 218 21 43 chr9 16045691 16045965 -126225479 - L1M4 LINE L1 -3665 2481 2202 21 0 0 0 chr9 16046534 16046555 -126224889 + AT_rich Low_complexity Low_complexity 1 21 0 1463 169 45 22 chr9 16046564 16046878 -126224566 - L1MB7 LINE L1 -7 6177 5857 192 304 0 51 chr9 16047045 16047124 -126224320 + MIR3 SINE MIR 126 200 -8 272 340 0 32 chr9 16047478 16047572 -126223872 + L2 LINE L2 3220 3310 -3 21 0 0 0 chr9 16050121 16050142 -126221302 + AT_rich Low_complexity Low_complexity 1 21 0 901 179 92 20 chr9 16050839 16051034 -126220410 + MIR SINE MIR 54 262 0 2321 106 0 0 chr9 16051800 16052102 -126219342 + AluSx SINE Alu 1 302 -10 1772 183 0 0 chr9 16052191 16052476 -126218968 - AluJb SINE Alu -27 285 1 573 140 22 0 chr9 16052522 16052658 -126218786 + (TA)n Simple_repeat Simple_repeat 1 139 0 497 253 75 6 chr9 16052879 16053053 -126218391 - L1ME LINE L1 -319 5802 5617 21 0 0 0 chr9 16053910 16053931 -126217513 + AT_rich Low_complexity Low_complexity 1 21 0 320 111 69 42 chr9 16054098 16054170 -126217274 + L1MA7 LINE L1 6218 6291 0 25 0 0 0 chr9 16054170 16054195 -126217249 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr9 16054317 16054340 -126217104 + AT_rich Low_complexity Low_complexity 1 23 0 217 322 119 28 chr9 16055992 16056135 -126215309 + MIR SINE MIR 57 212 -50 25 31 0 0 chr9 16057120 16057152 -126214292 + AT_rich Low_complexity Low_complexity 1 32 0 2285 243 60 39 chr9 16057316 16057974 -126213470 - L1ME2 LINE L1 -6 6158 5477 2510 104 16 8 chr9 16057974 16058359 -126213085 + L1PA13 LINE L1 5776 6163 0 2285 243 60 39 chr9 16058359 16058700 -126212744 - L1ME2 LINE L1 -687 5477 5144 287 39 481 0 chr9 16059182 16059234 -126212210 + MADE1 DNA Mariner 1 77 -3 283 172 62 31 chr9 16059283 16059347 -126212097 + L2 LINE L2 3247 3312 -1 27 0 0 0 chr9 16060664 16060691 -126210753 + AT_rich Low_complexity Low_complexity 1 27 0 1670 160 0 38 chr9 16064439 16064732 -126206712 + AluJb SINE Alu 1 282 -30 265 306 27 48 chr9 16065132 16065279 -126206165 - L2 LINE L2 -15 3298 3155 239 0 32 0 chr9 16065922 16065953 -126205491 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 955 171 51 0 chr9 16067549 16067724 -126203720 + MLT1C LTR MaLR 1 184 -283 1013 114 0 0 chr9 16067724 16067855 -126203589 + AluSg SINE Alu 1 131 -179 2006 114 19 19 chr9 16067956 16068271 -126203173 + THE1C LTR MaLR 61 375 0 446 200 27 0 chr9 16069433 16069543 -126201901 + L1M4 LINE L1 4642 4754 -1392 1140 193 40 40 chr9 16069718 16069967 -126201477 + AluJo SINE Alu 20 268 -44 1137 163 0 0 chr9 16070055 16070221 -126201223 - AluSg/x SINE Alu -22 290 125 349 283 36 13 chr9 16070463 16070607 -126200837 - MIR SINE MIR -62 146 2 603 317 72 73 chr9 16071381 16071987 -126199457 - L2 LINE L2 0 3272 2613 192 323 54 39 chr9 16073571 16073701 -126197743 - L2 LINE L2 -3 3310 3179 246 238 73 46 chr9 16074855 16075006 -126196438 - L1ME4a LINE L1 -3 6118 5964 767 144 8 0 chr9 16075143 16075261 -126196183 + AluJb SINE Alu 163 281 -31 278 229 14 0 chr9 16075742 16075812 -126195632 - MER116 DNA Mariner -2 78 8 320 0 25 0 chr9 16075812 16075852 -126195592 + (CATA)n Simple_repeat Simple_repeat 3 43 0 239 309 74 0 chr9 16075973 16076054 -126195390 + L2 LINE L2 3223 3309 -4 2280 139 8 16 chr9 16076390 16076757 -126194687 - THE1B LTR MaLR 0 364 1 276 53 0 0 chr9 16078033 16078071 -126193373 + (TG)n Simple_repeat Simple_repeat 2 39 0 2065 131 7 3 chr9 16079180 16079478 -126191966 + AluSq SINE Alu 3 301 -12 207 93 0 70 chr9 16079886 16079929 -126191515 + (CAAAAA)n Simple_repeat Simple_repeat 1 40 0 21 0 0 0 chr9 16080535 16080556 -126190888 + AT_rich Low_complexity Low_complexity 1 21 0 2528 50 0 0 chr9 16081127 16081429 -126190015 - AluY SINE Alu -9 302 1 1626 152 7 40 chr9 16082064 16082341 -126189103 + AluJb SINE Alu 1 268 -44 420 174 49 21 chr9 16082350 16082494 -126188950 + GA-rich Low_complexity Low_complexity 4 151 0 515 198 25 20 chr9 16082519 16082766 -126188678 + GA-rich Low_complexity Low_complexity 1 248 0 2115 117 18 47 chr9 16084138 16084435 -126187009 + L1MA8 LINE L1 5919 6204 -87 2112 117 9 25 chr9 16084435 16084752 -126186692 + AluSx SINE Alu 1 312 0 2115 117 18 47 chr9 16084752 16084838 -126186606 + L1MA8 LINE L1 6204 6291 0 2157 43 0 0 chr9 16085676 16085934 -126185510 + L1PA3 LINE L1 5898 6155 0 928 207 18 50 chr9 16086418 16086640 -126184804 - AluJb SINE Alu -3 309 95 858 125 0 0 chr9 16086746 16086866 -126184578 + AluSg/x SINE Alu 176 295 -17 948 218 76 8 chr9 16086883 16087145 -126184299 + MLT1C LTR MaLR 188 467 0 219 330 177 23 chr9 16087583 16087798 -126183646 + L2 LINE L2 2977 3224 -48 2114 114 3 0 chr9 16089193 16089490 -126181954 + AluSx SINE Alu 1 298 -14 2179 108 0 0 chr9 16091147 16091434 -126180010 + AluSq SINE Alu 1 287 -26 335 212 0 59 chr9 16091988 16092073 -126179371 - MIR SINE MIR -65 197 118 2750 183 27 24 chr9 16093464 16094012 -126177432 + MER44D DNA MER2_type 1 605 0 215 303 0 30 chr9 16094102 16094201 -126177243 + GA-rich Low_complexity Low_complexity 1 96 0 776 235 16 0 chr9 16095102 16095285 -126176159 - MER20 DNA MER1_type -28 191 6 655 116 0 0 chr9 16095337 16095432 -126176012 + AluSg/x SINE Alu 206 300 -12 360 297 72 9 chr9 16095729 16095840 -126175604 + L2 LINE L2 3196 3313 0 2097 113 43 60 chr9 16095882 16096252 -126175192 + THE1B LTR MaLR 1 364 0 585 278 11 0 chr9 16096496 16096672 -126174772 + MER20 DNA MER1_type 40 217 -2 207 211 0 0 chr9 16096820 16096858 -126174586 + MIR SINE MIR 92 129 -133 392 266 162 26 chr9 16097292 16097446 -126173998 + MIR SINE MIR 82 256 -6 261 241 46 35 chr9 16098085 16098172 -126173272 + MIR SINE MIR 162 249 -13 216 290 226 16 chr9 16098988 16099112 -126172332 - MIR SINE MIR -108 154 5 421 186 39 20 chr9 16099370 16099472 -126171972 + MIR SINE MIR 90 193 -69 22 35 0 0 chr9 16100176 16100205 -126171239 + AT_rich Low_complexity Low_complexity 1 29 0 344 198 33 44 chr9 16100430 16100521 -126170923 + L2 LINE L2 3224 3313 0 238 49 24 24 chr9 16100860 16100901 -126170543 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 189 229 62 0 chr9 16102868 16102916 -126168528 + L2 LINE L2 3187 3237 -35 441 281 41 34 chr9 16102947 16103093 -126168351 + L2 LINE L2 3163 3309 -4 255 233 27 67 chr9 16103700 16103850 -126167594 + L1MC4a LINE L1 5787 5930 -1878 374 231 81 131 chr9 16103993 16104413 -126167031 + L1ME4a LINE L1 5442 5919 -202 1224 205 11 32 chr9 16105956 16106234 -126165210 + MLT2D LTR ERVL 86 357 -57 468 0 0 0 chr9 16106234 16106286 -126165158 + (TC)n Simple_repeat Simple_repeat 1 52 0 323 264 145 14 chr9 16106509 16106686 -126164758 + MIR SINE MIR 2 209 -53 427 333 103 10 chr9 16106798 16106993 -126164451 - MIR SINE MIR -30 232 20 2158 127 0 7 chr9 16107146 16107454 -126163990 + AluSx SINE Alu 1 306 -6 316 255 28 28 chr9 16108474 16108580 -126162864 + MIR3 SINE MIR 85 190 -18 185 319 97 14 chr9 16108710 16108782 -126162662 - MIR3 SINE MIR -116 92 15 24 67 0 0 chr9 16109318 16109363 -126162081 + AT_rich Low_complexity Low_complexity 1 45 0 30 27 0 0 chr9 16110013 16110050 -126161394 + AT_rich Low_complexity Low_complexity 1 37 0 1951 148 10 0 chr9 16110056 16110353 -126161091 + AluJb SINE Alu 6 305 -7 798 63 16 24 chr9 16110355 16110482 -126160962 + (GGGAA)n Simple_repeat Simple_repeat 2 127 0 685 203 8 0 chr9 16110484 16110612 -126160832 + FLAM_C SINE Alu 2 130 -3 268 370 56 0 chr9 16112809 16112917 -126158527 + MIR SINE MIR 32 145 -63 359 172 126 13 chr9 16113103 16113254 -126158190 + MER113 DNA MER1_type? 4 171 -350 191 61 30 0 chr9 16113323 16113356 -126158088 + (CA)n Simple_repeat Simple_repeat 2 35 0 2252 92 3 3 chr9 16113432 16113726 -126157718 - AluSq SINE Alu -19 294 1 315 341 30 15 chr9 16113801 16113933 -126157511 + MER5B DNA MER1_type 15 148 -30 361 236 38 47 chr9 16113807 16113913 -126157531 - MER5A DNA MER1_type -22 167 63 729 255 86 29 chr9 16114449 16114692 -126156752 - MIR SINE MIR 0 262 6 364 216 0 0 chr9 16115967 16116055 -126155389 - L1MA9 LINE L1 -38 6274 6187 996 300 58 17 chr9 16116531 16117051 -126154393 + L1ME3A LINE L1 5327 5867 -303 2660 145 50 2 chr9 16117217 16117679 -126153765 + L1MB2 LINE L1 5681 6164 -7 556 342 5 5 chr9 16117854 16118038 -126153406 - MIR SINE MIR -78 184 1 1186 166 43 9 chr9 16118236 16118447 -126152997 + MER20 DNA MER1_type 1 218 -1 261 0 0 0 chr9 16119005 16119034 -126152410 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 380 292 87 10 chr9 16119170 16119365 -126152079 + MLT1J1 LTR MaLR 1 210 -236 21 0 0 0 chr9 16119726 16119747 -126151697 + AT_rich Low_complexity Low_complexity 1 21 0 181 242 33 110 chr9 16119856 16119947 -126151497 - L2 LINE L2 -3 3269 3186 34 42 0 0 chr9 16120216 16120264 -126151180 + AT_rich Low_complexity Low_complexity 1 48 0 214 309 0 0 chr9 16120544 16120599 -126150845 + GA-rich Low_complexity Low_complexity 2 56 0 1762 116 0 45 chr9 16123564 16123860 -126147584 - AluSg SINE Alu 0 310 27 423 38 0 0 chr9 16123995 16124048 -126147396 + (CA)n Simple_repeat Simple_repeat 2 54 0 219 241 69 78 chr9 16124933 16125049 -126146395 - MIR SINE MIR -56 206 92 311 272 139 35 chr9 16125950 16126152 -126145292 - LTR16C LTR ERVL -89 402 180 2371 100 3 0 chr9 16126461 16126771 -126144673 + AluY SINE Alu 1 311 0 801 251 86 25 chr9 16126901 16127144 -126144300 - MIR SINE MIR 0 262 5 505 248 202 14 chr9 16127384 16127602 -126143842 + MIR SINE MIR 2 260 -2 1980 121 0 0 chr9 16128106 16128371 -126143073 - AluSx SINE Alu -44 268 4 22 70 0 0 chr9 16128590 16128633 -126142811 + AT_rich Low_complexity Low_complexity 1 43 0 1070 176 87 23 chr9 16128846 16129175 -126142269 + MSTD LTR MaLR 1 396 0 211 226 68 75 chr9 16129275 16129408 -126142036 + MIR SINE MIR 118 249 -13 24 0 0 0 chr9 16130077 16130101 -126141343 + AT_rich Low_complexity Low_complexity 1 24 0 377 257 79 46 chr9 16130413 16130565 -126140879 + MIR SINE MIR 33 189 -73 507 200 43 21 chr9 16132572 16132712 -126138732 - MER103 DNA DNA -1 165 23 21 0 0 0 chr9 16133409 16133430 -126138014 + AT_rich Low_complexity Low_complexity 1 21 0 331 286 198 16 chr9 16134126 16134318 -126137126 - Charlie8 DNA MER1_type -1016 1401 77 2205 134 26 0 chr9 16134348 16134698 -126136746 + THE1B LTR MaLR 6 364 0 252 91 23 0 chr9 16135900 16135944 -126135500 + MADE1 DNA Mariner 36 80 0 589 158 22 125 chr9 16135945 16136129 -126135315 + MLT1C LTR MaLR 303 467 0 24 32 0 0 chr9 16137597 16137628 -126133816 + AT_rich Low_complexity Low_complexity 1 31 0 2166 133 0 0 chr9 16137632 16137933 -126133511 + AluSq SINE Alu 1 301 -12 303 169 34 0 chr9 16137937 16137996 -126133448 + L1MC4 LINE L1 6640 6700 -1342 2057 113 20 0 chr9 16138523 16138816 -126132628 - AluSx SINE Alu -13 299 1 1145 208 17 123 chr9 16139026 16139434 -126132010 + MLT1A1 LTR MaLR 1 365 0 7189 199 67 24 chr9 16139447 16141072 -126130372 + MLT1A1-int LTR MaLR 36 1730 -5 194 352 19 0 chr9 16141225 16141279 -126130165 + L2 LINE L2 3121 3175 -97 598 244 117 17 chr9 16141320 16141500 -126129944 + MIR SINE MIR 52 249 -13 206 333 0 48 chr9 16141506 16141590 -126129854 + L2 LINE L2 3193 3272 0 1591 173 130 8 chr9 16141839 16142192 -126129252 + MSTD LTR MaLR 1 396 0 1281 113 0 0 chr9 16143043 16143237 -126128207 + LTR9B LTR ERV1 451 644 0 1936 218 31 48 chr9 16143238 16143753 -126127691 + HUERS-P3b LTR ERV1 2 507 -6911 3885 127 3 10 chr9 16143783 16144435 -126127009 + HUERS-P3b LTR ERV1 764 1483 -5935 185 227 107 0 chr9 16144435 16144510 -126126934 - MER5C DNA MER1_type -241 83 1 6036 111 31 10 chr9 16144510 16145510 -126125934 + HUERS-P3b LTR ERV1 1559 2642 -4776 2263 182 33 2 chr9 16145510 16145938 -126125506 - LTR8 LTR ERV1 -250 441 1 5662 86 1 20 chr9 16145938 16146755 -126124689 + HUERS-P3b LTR ERV1 3073 3874 -3544 * 15313 107 28 9 chr9 16146748 16149303 -126122141 + HUERS-P3b LTR ERV1 2123 7411 -7 3272 94 32 43 chr9 16149304 16149868 -126121576 + LTR9B LTR ERV1 1 558 -86 318 50 0 0 chr9 16149868 16149908 -126121536 + (CA)n Simple_repeat Simple_repeat 1 40 0 465 314 57 31 chr9 16150311 16150505 -126120939 - MIR SINE MIR -13 249 51 231 36 0 0 chr9 16150914 16150942 -126120502 + (CA)n Simple_repeat Simple_repeat 1 28 0 212 358 75 33 chr9 16151107 16151227 -126120217 - L2 LINE L2 -10 3262 3138 269 320 205 24 chr9 16151539 16151876 -126119568 - L2 LINE L2 -676 2638 2241 2503 96 5 40 chr9 16152749 16153124 -126118320 - THE1B LTR MaLR -2 362 1 645 274 155 9 chr9 16153350 16153569 -126117875 - MIR SINE MIR 0 262 12 348 320 8 23 chr9 16154501 16154629 -126116815 + MIR SINE MIR 53 178 -84 295 330 104 0 chr9 16155229 16155344 -126116100 + MIR SINE MIR 28 154 -108 1612 191 35 140 chr9 16155345 16155911 -126115533 + MLT2B3 LTR ERVL 1 507 -47 309 109 0 0 chr9 16155912 16155958 -126115486 + (TAGG)n Simple_repeat Simple_repeat 1 46 0 249 232 0 0 chr9 16155963 16156019 -126115425 + MLT2B3 LTR ERVL 465 520 0 189 139 28 0 chr9 16156061 16156097 -126115347 + MIR SINE MIR 226 262 0 612 205 26 53 chr9 16156123 16156274 -126115170 + MER5A DNA MER1_type 1 147 -42 856 277 36 5 chr9 16156301 16156525 -126114919 + MIR SINE MIR 20 250 -12 2326 90 3 0 chr9 16156650 16156949 -126114495 - AluSx SINE Alu -12 300 1 2414 107 0 0 chr9 16157720 16158029 -126113415 - AluSx SINE Alu -3 309 1 2957 63 0 2 chr9 16158546 16158945 -126112499 + L1PA8 LINE L1 5755 6152 -20 201 162 0 0 chr9 16159090 16159127 -126112317 + T-rich Low_complexity Low_complexity 5 41 0 443 143 0 12 chr9 16159809 16159893 -126111551 + (GGGA)n Simple_repeat Simple_repeat 3 85 0 187 268 18 0 chr9 16160329 16160385 -126111059 + L3b LINE CR1 1256 1312 -271 198 277 0 0 chr9 16160960 16161007 -126110437 + MIR SINE MIR 103 149 -113 904 195 32 45 chr9 16161536 16161757 -126109687 + MER20 DNA MER1_type 2 219 0 488 335 58 11 chr9 16162574 16162765 -126108679 + L3b LINE CR1 1249 1448 -135 795 104 0 0 chr9 16162853 16162959 -126108485 + U6 snRNA snRNA 1 106 -1 1424 70 11 0 chr9 16162960 16163146 -126108298 + L1PA10 LINE L1 5964 6151 -17 504 295 46 43 chr9 16163247 16163576 -126107868 + MER102b DNA MER1_type 4 333 -8 637 265 24 12 chr9 16164137 16164307 -126107137 - MER5B DNA MER1_type 0 178 7 427 285 65 25 chr9 16164309 16164509 -126106935 + MIR SINE MIR 22 229 -33 1719 166 17 27 chr9 16164835 16165131 -126106313 + AluJo SINE Alu 6 298 -14 306 279 111 17 chr9 16166699 16166871 -126104573 + L1MEc LINE L1 2216 2403 -3993 575 326 46 58 chr9 16167237 16167445 -126103999 - L1M4 LINE L1 -930 5216 5007 1914 140 0 34 chr9 16167445 16167764 -126103680 - AluSx SINE Alu 0 309 1 575 326 46 58 chr9 16167764 16168035 -126103409 - L1M4 LINE L1 -1139 5007 4742 290 275 8 0 chr9 16168103 16168223 -126103221 - L1M4 LINE L1 -1438 4708 4588 904 264 67 68 chr9 16168532 16169292 -126102152 - HAL1 LINE L1 -758 1749 991 516 167 0 0 chr9 16169345 16169435 -126102009 - U6 snRNA snRNA 0 107 18 198 71 0 0 chr9 16169748 16169776 -126101668 + (A)n Simple_repeat Simple_repeat 1 28 0 5105 172 38 22 chr9 16169784 16170145 -126101299 + L1MA10 LINE L1 5116 5470 -864 2347 112 79 2 chr9 16170145 16170564 -126100880 - MLT2A2 LTR ERVL -2 451 1 5105 172 38 22 chr9 16170564 16171245 -126100199 + L1MA10 LINE L1 5470 6183 -151 180 111 0 0 chr9 16171245 16171272 -126100172 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 5105 172 38 22 chr9 16171272 16171427 -126100017 + L1MA10 LINE L1 6183 6334 0 1291 179 4 30 chr9 16172298 16172532 -126098912 - AluJo SINE Alu -84 228 1 216 292 99 109 chr9 16173078 16173270 -126098174 - L2 LINE L2 -493 2821 2632 295 350 43 21 chr9 16173556 16173742 -126097702 + L2 LINE L2 1840 2029 -1285 182 340 125 43 chr9 16173754 16174145 -126097299 + L2 LINE L2 2553 2975 -339 895 223 27 0 chr9 16174621 16174805 -126096639 - MER7C DNA MER2_type -413 189 1 304 285 252 33 chr9 16175922 16176164 -126095280 + HAL1 LINE L1 826 1120 -1387 646 184 39 67 chr9 16176303 16176451 -126094993 - MER21B LTR ERV1 -1 862 718 1910 141 20 23 chr9 16176451 16176750 -126094694 - AluSx SINE Alu -14 298 1 646 184 39 67 chr9 16176750 16176780 -126094664 - MER21B LTR ERV1 -145 718 689 534 270 60 75 chr9 16176981 16177233 -126094211 - MER102a DNA MER1_type -15 315 68 2139 127 7 0 chr9 16177248 16177556 -126093888 + AluSx SINE Alu 1 310 -2 2294 94 3 0 chr9 16178327 16178625 -126092819 + AluSx SINE Alu 1 299 -13 856 277 36 5 chr9 16178750 16178974 -126092470 - MIR SINE MIR -12 250 20 625 211 20 53 chr9 16179001 16179153 -126092291 - MER5A DNA MER1_type -42 147 1 2365 116 3 0 chr9 16179760 16180071 -126091373 - AluSx SINE Alu 0 312 1 5302 58 0 31 chr9 16180673 16181380 -126090064 - L1PA7 LINE L1 0 6154 5470 235 256 110 0 chr9 16182432 16182514 -126088930 - MIR SINE MIR -61 201 111 2148 142 0 0 chr9 16184936 16185238 -126086206 + AluSx SINE Alu 1 302 -10 342 0 0 0 chr9 16186396 16186434 -126085010 + (CA)n Simple_repeat Simple_repeat 1 38 0 189 74 0 0 chr9 16188061 16188088 -126083356 + (CA)n Simple_repeat Simple_repeat 2 28 0 22 35 0 0 chr9 16188707 16188736 -126082708 + AT_rich Low_complexity Low_complexity 1 29 0 2295 101 0 0 chr9 16188738 16189036 -126082408 - AluY SINE Alu -13 298 1 2286 176 79 4 chr9 16189062 16189555 -126081889 + L1MB7 LINE L1 5597 6126 -58 632 328 87 52 chr9 16189660 16190354 -126081090 + L1M4 LINE L1 4446 5159 -987 652 216 196 5 chr9 16190897 16191101 -126080343 - MIR SINE MIR -9 253 11 2218 59 0 11 chr9 16191379 16191650 -126079794 + AluY SINE Alu 35 302 -9 803 165 0 0 chr9 16193172 16193293 -126078151 - FLAM_C SINE Alu -22 121 1 416 269 130 43 chr9 16193615 16193823 -126077621 - MIR SINE MIR 0 262 37 16303 73 2 6 chr9 16193937 16196301 -126075143 - L1P LINE L1 -2118 4028 1675 1274 268 95 3 chr9 16196522 16196902 -126074542 + L2 LINE L2 2025 2439 -875 1139 250 63 16 chr9 16196952 16197432 -126074012 + MLT1E LTR MaLR 1 593 0 1514 272 49 43 chr9 16197432 16198082 -126073362 + L2 LINE L2 2520 3194 -119 552 86 0 12 chr9 16198082 16198163 -126073281 + MADE1 DNA Mariner 1 80 0 1514 272 49 43 chr9 16198163 16198284 -126073160 + L2 LINE L2 3194 3313 0 2153 129 0 3 chr9 16198379 16198682 -126072762 + AluSq SINE Alu 1 302 -11 338 285 72 12 chr9 16198983 16199235 -126072209 + L1ME LINE L1 5635 5818 -303 1388 162 139 35 chr9 16199431 16199770 -126071674 + MLT1A2 LTR MaLR 1 374 0 2315 110 7 0 chr9 16199827 16200136 -126071308 + AluSx SINE Alu 1 311 -1 965 261 76 58 chr9 16201165 16201651 -126069793 + MLT1J LTR MaLR 3 497 -14 2137 115 23 10 chr9 16201957 16202262 -126069182 - AluSx SINE Alu -3 309 1 929 98 0 0 chr9 16202311 16202434 -126069010 + AluSg/x SINE Alu 174 296 -14 2173 98 0 0 chr9 16203478 16203764 -126067680 + AluSx SINE Alu 27 312 0 2265 41 0 0 chr9 16204421 16204689 -126066755 - AluY SINE Alu -3 308 41 256 83 21 0 chr9 16204879 16204927 -126066517 - L1MA8 LINE L1 -5 6286 6238 1688 162 3 14 chr9 16204927 16205217 -126066227 - AluJo SINE Alu -15 297 11 1530 133 48 3 chr9 16205269 16205562 -126065882 - L1MA8 LINE L1 -49 6242 5937 2468 84 0 3 chr9 16205611 16205920 -126065524 + AluSc SINE Alu 2 309 0 1445 157 59 59 chr9 16206122 16206428 -126065016 + AluJb SINE Alu 4 309 -3 205 349 47 0 chr9 16207219 16207325 -126064119 - MIR SINE MIR -23 239 129 1892 127 0 0 chr9 16207350 16207603 -126063841 - AluSq SINE Alu -60 253 1 759 290 67 8 chr9 16207605 16207843 -126063601 - MIR SINE MIR -6 256 5 393 315 109 18 chr9 16208463 16208793 -126062651 - L1ME4a LINE L1 -228 5893 5534 706 264 34 52 chr9 16209221 16209726 -126061718 - MER34 LTR ERV1 -3 640 5 327 246 35 9 chr9 16209897 16210011 -126061433 - MER103 DNA DNA -4 162 46 180 0 0 0 chr9 16210059 16210079 -126061365 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 320 293 43 64 chr9 16210783 16210951 -126060493 - L2 LINE L2 -1 3312 3147 634 227 0 0 chr9 16210951 16211083 -126060361 + FLAM_A SINE Alu 1 132 -1 320 293 43 64 chr9 16211083 16211102 -126060342 - L2 LINE L2 -166 3147 3129 715 21 0 0 chr9 16211465 16211560 -126059884 + MER41A LTR ERV1 402 496 -58 363 94 0 2 chr9 16211600 16211655 -126059789 + MER41A LTR ERV1 501 554 0 267 154 320 13 chr9 16211655 16211733 -126059711 + MER41A-int LTR ERV1 1 102 -5844 4955 120 49 5 chr9 16211745 16212547 -126058897 + MER41A-int LTR ERV1 4 840 -5106 2574 138 45 31 chr9 16212547 16212667 -126058777 + MER41A-int LTR ERV1 1567 1684 -6132 204 40 0 0 chr9 16212667 16212692 -126058752 + (TC)n Simple_repeat Simple_repeat 2 26 0 2574 138 45 31 chr9 16212692 16213192 -126058252 + MER41A-int LTR ERV1 1684 3757 -4059 * 12892 87 19 6 chr9 16213181 16215434 -126056010 + MER41A-int LTR ERV1 2856 5944 -2 3247 82 2 25 chr9 16215434 16215769 -126055675 + MER41A LTR ERV1 1 323 -231 2361 95 0 3 chr9 16215769 16216074 -126055370 + AluSg SINE Alu 1 304 -6 3247 82 2 25 chr9 16216074 16216215 -126055229 + MER41A LTR ERV1 323 466 -88 415 211 232 7 chr9 16216662 16216804 -126054640 - MIR SINE MIR 0 262 89 296 233 0 0 chr9 16216906 16216966 -126054478 - MIR SINE MIR -73 135 76 1795 172 0 16 chr9 16217096 16217399 -126054045 - AluJo SINE Alu -14 298 1 349 284 41 47 chr9 16217674 16217843 -126053601 + MIR SINE MIR 89 256 -6 21 36 0 0 chr9 16217879 16217907 -126053537 + AT_rich Low_complexity Low_complexity 1 28 0 1287 125 64 50 chr9 16217913 16217965 -126053479 + L1MC2 LINE L1 6060 6110 -234 2171 114 13 0 chr9 16217965 16218263 -126053181 + AluSx SINE Alu 1 302 -10 1287 125 64 50 chr9 16218263 16218490 -126052954 + L1MC2 LINE L1 6110 6343 -1 205 231 64 77 chr9 16219433 16219511 -126051933 - MER91C DNA MER1_type -31 109 33 613 156 28 9 chr9 16219726 16219835 -126051609 - MER5B DNA MER1_type -67 111 1 22 35 0 0 chr9 16220587 16220616 -126050828 + AT_rich Low_complexity Low_complexity 1 29 0 197 275 87 0 chr9 16221284 16221353 -126050091 + MIR SINE MIR 110 184 -78 1542 199 20 7 chr9 16221355 16221651 -126049793 - AluJb SINE Alu -12 300 1 2468 47 24 3 chr9 16223345 16223643 -126047801 + AluY SINE Alu 1 304 -7 736 334 26 13 chr9 16223744 16224046 -126047398 + L3 LINE CR1 591 896 -681 282 206 359 8 chr9 16224055 16224186 -126047258 + L3 LINE CR1 1242 1418 -159 559 292 64 92 chr9 16224273 16224742 -126046702 + L2 LINE L2 2816 3271 -1 2232 104 0 16 chr9 16225112 16225428 -126046016 + AluSx SINE Alu 1 311 -1 291 291 134 24 chr9 16225670 16225797 -126045647 - MIR SINE MIR -96 166 26 379 274 137 8 chr9 16227333 16227457 -126043987 - MIR3 SINE MIR -15 193 54 276 222 26 111 chr9 16227456 16227573 -126043871 + L2 LINE L2 3160 3266 -6 * 273 306 204 0 chr9 16228244 16228401 -126043043 + MER5A DNA MER1_type 1 189 0 346 217 7 7 chr9 16229981 16230133 -126041311 + (CA)n Simple_repeat Simple_repeat 1 152 0 322 316 22 0 chr9 16230145 16230281 -126041163 + (CA)n Simple_repeat Simple_repeat 1 139 0 274 327 9 9 chr9 16230931 16231041 -126040403 + GA-rich Low_complexity Low_complexity 3 112 0 407 247 64 78 chr9 16232644 16232940 -126038504 + L1MC4a LINE L1 3718 4009 -2137 704 281 73 25 chr9 16232956 16233433 -126038011 + L1MC4a LINE L1 4110 4609 -1537 518 181 29 12 chr9 16233443 16233614 -126037830 + (TA)n Simple_repeat Simple_repeat 1 174 0 274 285 48 88 chr9 16233614 16234158 -126037286 + L1MC4a LINE L1 4620 5141 -1005 279 322 33 25 chr9 16234863 16234984 -126036460 - MER5A DNA MER1_type 0 189 68 198 71 0 0 chr9 16235141 16235169 -126036275 + (CAT)n Simple_repeat Simple_repeat 1 28 0 329 357 52 7 chr9 16235177 16235331 -126036113 - MIR SINE MIR -12 250 90 607 213 18 18 chr9 16235428 16235466 -126035978 + L1ME LINE L1 5625 5662 -500 2132 182 65 5 chr9 16235466 16235868 -126035576 - MSTB LTR MaLR 0 426 1 607 213 18 18 chr9 16235868 16235998 -126035446 + L1ME LINE L1 5661 5793 -369 2280 104 10 0 chr9 16236039 16236346 -126035098 - AluSg SINE Alu 0 310 1 440 287 91 32 chr9 16236358 16236699 -126034745 - L1ME LINE L1 -301 5820 5460 2123 246 188 64 chr9 16237043 16237515 -126033929 + L1MC4a LINE L1 5327 5739 -2069 1681 189 18 0 chr9 16237515 16237796 -126033648 + AluJb SINE Alu 3 288 -24 2123 246 188 64 chr9 16237796 16238727 -126032717 + L1MC4a LINE L1 5739 6952 -856 1656 239 20 64 chr9 16238727 16239271 -126032173 - MLT2B1 LTR ERVL 0 520 1 2123 246 188 64 chr9 16239271 16239455 -126031989 + L1MC4a LINE L1 6952 7112 -696 1213 236 79 52 chr9 16239457 16239974 -126031470 + L1MC4 LINE L1 7508 8038 -4 21 104 0 0 chr9 16240101 16240178 -126031266 + AT_rich Low_complexity Low_complexity 1 77 0 25 65 0 0 chr9 16240206 16240252 -126031192 + AT_rich Low_complexity Low_complexity 1 46 0 309 103 44 0 chr9 16240273 16240341 -126031103 + (TA)n Simple_repeat Simple_repeat 2 72 0 1932 157 0 0 chr9 16240341 16240627 -126030817 - AluSx SINE Alu -26 286 1 405 197 0 0 chr9 16240747 16240813 -126030631 - AluJ/FLAM SINE Alu -228 84 19 320 293 48 34 chr9 16241003 16241211 -126030233 - L1ME LINE L1 -436 5685 5475 193 273 107 33 chr9 16241534 16241684 -126029760 + MIR SINE MIR 100 260 -2 1808 150 3 59 chr9 16243573 16243893 -126027551 - AluSx SINE Alu -10 302 1 22 35 0 0 chr9 16244474 16244503 -126026941 + AT_rich Low_complexity Low_complexity 1 29 0 2554 62 0 3 chr9 16244517 16244826 -126026618 + AluSc SINE Alu 1 308 -1 409 281 37 22 chr9 16245224 16245359 -126026085 + MIR3 SINE MIR 12 148 -60 1092 71 7 0 chr9 16245368 16245509 -126025935 - AluSg/x SINE Alu -5 307 166 250 182 18 0 chr9 16245826 16245881 -126025563 - Charlie1 DNA MER1_type -1 2760 2705 196 116 47 0 chr9 16247358 16247401 -126024043 - MIR SINE MIR -51 211 167 270 0 0 0 chr9 16247617 16247647 -126023797 + (A)n Simple_repeat Simple_repeat 1 30 0 185 318 38 38 chr9 16247706 16247838 -126023606 - L2 LINE L2 -464 2850 2719 296 279 0 0 chr9 16248277 16248345 -126023099 - L2 LINE L2 -248 3065 2998 327 327 36 0 chr9 16248646 16248756 -126022688 - MIR SINE MIR -62 146 33 258 344 42 11 chr9 16248783 16248972 -126022472 - L2 LINE L2 0 3313 3119 3091 169 20 2 chr9 16249473 16250066 -126021378 + L1MB2 LINE L1 5512 6115 -56 1949 111 14 14 chr9 16250296 16250575 -126020869 - AluSg SINE Alu -31 279 1 22 0 0 0 chr9 16250575 16250597 -126020847 + AT_rich Low_complexity Low_complexity 1 22 0 276 333 12 0 chr9 16251364 16251448 -126019996 - L2 LINE L2 0 3313 3229 718 266 37 33 chr9 16251458 16251702 -126019742 - LTR40b LTR ERVL -6 456 212 211 331 70 25 chr9 16251905 16252062 -126019382 - L2 LINE L2 -422 2892 2729 184 268 112 140 chr9 16253519 16253698 -126017746 - MIR3 SINE MIR -11 197 24 302 301 51 3 chr9 16254056 16254182 -126017262 + MIR SINE MIR 7 147 -61 622 217 18 24 chr9 16254393 16254559 -126016885 - L1ME3 LINE L1 -8 6154 5990 1275 183 0 3 chr9 16254586 16254814 -126016630 + MLT2B1 LTR ERVL 275 494 -26 801 211 143 4 chr9 16254814 16255080 -126016364 - L1ME3 LINE L1 -216 5954 5652 264 256 12 0 chr9 16255103 16255185 -126016259 - L1ME3 LINE L1 -479 5683 5601 259 299 140 19 chr9 16255288 16255327 -126016117 - L2 LINE L2 -11 3302 3269 3262 161 12 2 chr9 16255327 16255842 -126015602 + MLT2B1 LTR ERVL 1 520 0 259 299 140 19 chr9 16255842 16255909 -126015535 - L2 LINE L2 -44 3269 3183 180 346 30 20 chr9 16256058 16256159 -126015285 + MIR SINE MIR 25 126 -82 2051 134 0 0 chr9 16256400 16256707 -126014737 + AluSq SINE Alu 1 307 0 1697 190 10 10 chr9 16256862 16257173 -126014271 - AluJb SINE Alu -1 311 1 1516 205 51 0 chr9 16257202 16257558 -126013886 + Charlie1b DNA MER1_type 1 374 -149 303 289 33 8 chr9 16257721 16257842 -126013602 + L1ME3 LINE L1 5872 5995 -167 395 255 0 0 chr9 16257849 16257943 -126013501 + L1ME3 LINE L1 6065 6158 -4 1722 185 0 17 chr9 16257969 16258256 -126013188 + AluJo SINE Alu 5 286 -26 557 39 0 13 chr9 16258259 16258336 -126013108 + (TAGA)n Simple_repeat Simple_repeat 3 78 0 185 293 69 17 chr9 16258354 16258412 -126013032 - MIR SINE MIR -108 100 40 289 259 31 57 chr9 16258495 16258688 -126012756 + L1ME4a LINE L1 5728 5915 -206 2205 171 61 0 chr9 16259001 16259702 -126011742 + L1M1 LINE L1 14 865 -6700 6346 106 19 14 chr9 16259741 16260875 -126010569 + L1MA3 LINE L1 5167 6305 0 28 29 0 0 chr9 16261843 16261878 -126009566 + AT_rich Low_complexity Low_complexity 1 35 0 29381 111 12 57 chr9 16263292 16269732 -126001712 + L1PA7 LINE L1 12 6153 -1 432 280 206 27 chr9 16271093 16271568 -125999876 + L2 LINE L2 1385 1944 -1370 1634 188 70 22 chr9 16271616 16272074 -125999370 - MER31A LTR ERV1 0 543 5 1167 271 171 35 chr9 16272075 16272790 -125998654 + L2 LINE L2 2029 2840 -474 278 283 33 33 chr9 16272834 16272926 -125998518 + LTR67 LTR ERVL 99 190 -367 765 237 17 78 chr9 16273322 16273443 -125998001 + MIR SINE MIR 44 146 -116 1724 180 0 24 chr9 16273443 16273737 -125997707 + AluJo SINE Alu 3 289 -23 765 237 17 78 chr9 16273737 16273847 -125997597 + MIR SINE MIR 146 261 -1 289 371 62 35 chr9 16273883 16274252 -125997192 + L2 LINE L2 2932 3310 -3 212 283 83 55 chr9 16274437 16274453 -125996991 - MIR SINE MIR -46 216 202 414 0 0 0 chr9 16274453 16274499 -125996945 + (TATG)n Simple_repeat Simple_repeat 2 47 0 1626 178 33 4 chr9 16274499 16274774 -125996670 - AluJo SINE Alu -27 285 3 212 283 83 55 chr9 16274774 16274901 -125996543 - MIR SINE MIR -59 203 68 568 213 133 7 chr9 16274918 16275068 -125996376 + MIR SINE MIR 58 226 -36 3676 153 35 13 chr9 16275158 16275793 -125995651 + MER51A LTR ERV1 1 640 0 767 280 19 5 chr9 16276878 16277085 -125994359 - MIR SINE MIR -21 241 32 2575 105 18 7 chr9 16277141 16277550 -125993894 + LTR12 LTR ERV1 98 713 -1 2348 173 106 9 chr9 16277550 16280401 -125991043 - SATR1 Satellite Satellite -2 3126 1 2260 171 110 19 chr9 16280429 16281753 -125989691 - SATR1 Satellite Satellite -1 1444 1 2376 183 14 5 chr9 16281753 16282185 -125989259 + LTR22 LTR ERVK 2 437 -143 30230 65 4 12 chr9 16282185 16287003 -125984441 + L1PA6 LINE L1 1382 6153 -1 2505 159 148 9 chr9 16287003 16288364 -125983080 - SATR1 Satellite Satellite -24 1551 1 1246 206 235 2 chr9 16288379 16288840 -125982604 + SATR1 Satellite Satellite 1 568 -140 1737 145 0 4 chr9 16288851 16289113 -125982331 - AluSx SINE Alu -51 261 1 27 0 0 0 chr9 16289396 16289423 -125982021 + AT_rich Low_complexity Low_complexity 1 27 0 973 196 0 0 chr9 16289432 16289590 -125981854 + AluJb SINE Alu 129 286 -26 2563 50 3 0 chr9 16289880 16290182 -125981262 + AluY SINE Alu 1 303 -8 1709 136 6 92 chr9 16290310 16290648 -125980796 - AluSx SINE Alu -3 309 1 190 266 31 16 chr9 16290901 16290965 -125980479 - L2 LINE L2 0 3272 3208 1730 163 10 27 chr9 16291095 16291395 -125980049 + AluJo SINE Alu 1 295 -17 183 80 0 0 chr9 16291395 16291420 -125980024 + (GA)n Simple_repeat Simple_repeat 1 25 0 697 75 0 19 chr9 16291420 16291527 -125979917 + (GGAA)n Simple_repeat Simple_repeat 1 105 0 439 128 13 26 chr9 16292524 16292602 -125978842 + MADE1 DNA Mariner 1 77 -3 1236 128 10 5 chr9 16293101 16293296 -125978148 - AluSg/x SINE Alu -9 303 108 304 233 14 0 chr9 16293604 16293677 -125977767 - MLT1I LTR MaLR -20 389 316 264 296 89 37 chr9 16293893 16294028 -125977416 - MLT1I LTR MaLR -267 142 1 2144 120 0 0 chr9 16294717 16295008 -125976436 + AluSx SINE Alu 16 306 -6 192 264 51 42 chr9 16295371 16295516 -125975928 + L2 LINE L2 2363 2979 -293 2167 140 0 0 chr9 16295941 16295962 -125975482 - AluSx SINE Alu -4 308 288 258 32 0 0 chr9 16295962 16295993 -125975451 + (TG)n Simple_repeat Simple_repeat 2 32 0 2167 140 0 0 chr9 16295993 16296279 -125975165 - AluSx SINE Alu -23 289 1 2430 161 85 5 chr9 16297178 16297601 -125973843 - MSTB2 LTR MaLR 0 457 1 375 371 8 0 chr9 16298010 16298134 -125973310 - MIR3 SINE MIR -54 154 30 22 0 0 0 chr9 16298311 16298333 -125973111 + AT_rich Low_complexity Low_complexity 1 22 0 1341 158 12 12 chr9 16298359 16298600 -125972844 - L1MA9 LINE L1 -5 6307 6067 629 290 58 37 chr9 16298621 16299000 -125972444 + L1ME4a LINE L1 5560 5946 -175 27 81 0 0 chr9 16299045 16299107 -125972337 + AT_rich Low_complexity Low_complexity 1 62 0 849 119 76 0 chr9 16299108 16299226 -125972218 - FLAM_C SINE Alu -16 127 1 420 270 113 0 chr9 16299706 16299821 -125971623 + L2 LINE L2 3145 3272 0 238 139 0 0 chr9 16299895 16299931 -125971513 - L2 LINE L2 -10 3303 3268 1903 139 24 7 chr9 16300819 16301107 -125970337 - AluSx SINE Alu -17 295 3 198 0 0 0 chr9 16301802 16301824 -125969620 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 1964 166 0 0 chr9 16301850 16302151 -125969293 - AluJo SINE Alu -11 301 1 865 148 7 22 chr9 16302571 16302706 -125968738 + FLAM_C SINE Alu 1 133 0 717 268 53 14 chr9 16302815 16303024 -125968420 + MIR SINE MIR 1 217 -45 5261 138 47 11 chr9 16303039 16303912 -125967532 + L1MA7 LINE L1 5387 6290 -1 338 169 28 162 chr9 16304290 16304432 -125967012 + HAL1 LINE L1 35 157 -2350 1838 173 45 43 chr9 16304476 16304537 -125966907 + MLT1C LTR MaLR 65 124 -343 2356 109 0 0 chr9 16304537 16304849 -125966595 + AluSx SINE Alu 1 312 0 1838 173 45 43 chr9 16304849 16305186 -125966258 + MLT1C LTR MaLR 124 464 -3 531 247 135 49 chr9 16305200 16305548 -125965896 + HAL1 LINE L1 184 561 -1946 2183 129 0 0 chr9 16305560 16305855 -125965589 - AluSx SINE Alu -15 297 3 1942 174 159 29 chr9 16305861 16306315 -125965129 + MLT2B1 LTR ERVL 8 520 0 227 309 136 0 chr9 16306344 16306425 -125965019 + HAL1 LINE L1 575 666 -1841 202 442 0 0 chr9 16306444 16306616 -125964828 + (CACCC)n Simple_repeat Simple_repeat 3 174 0 2139 237 92 65 chr9 16306628 16307683 -125963761 + HAL1 LINE L1 759 1842 -665 591 234 166 0 chr9 16307687 16307832 -125963612 - MER5A DNA MER1_type -10 179 11 2194 123 3 10 chr9 16308387 16308696 -125962748 + AluSx SINE Alu 1 307 -5 952 154 20 36 chr9 16308718 16308913 -125962531 - L1 LINE L1 -1544 4602 4411 8085 142 15 2 chr9 16308938 16310188 -125961256 + HSMAR2 DNA Mariner 36 1301 -1 237 167 0 0 chr9 16310188 16310230 -125961214 - L1 LINE L1 -2137 4009 3968 * 2146 182 7 2 chr9 16310229 16310635 -125960809 + L1MA10 LINE L1 4629 5036 -1110 5766 158 37 19 chr9 16310740 16310996 -125960448 + L1MA10 LINE L1 5221 5471 -863 3467 90 16 5 chr9 16310996 16311442 -125960002 - MLT2A2 LTR ERVL -2 451 1 5766 158 37 19 chr9 16311442 16312123 -125959321 + L1MA10 LINE L1 5471 6183 -151 180 111 0 0 chr9 16312123 16312150 -125959294 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 5766 158 37 19 chr9 16312150 16312305 -125959139 + L1MA10 LINE L1 6183 6334 0 194 237 0 34 chr9 16313565 16313624 -125957820 - L2 LINE L2 -92 3221 3165 296 298 123 35 chr9 16314191 16314362 -125957082 - MIR3 SINE MIR -7 201 16 481 236 79 53 chr9 16314495 16314684 -125956760 - MIR SINE MIR -48 214 18 2246 128 0 0 chr9 16315566 16315878 -125955566 + AluSx SINE Alu 1 312 0 328 213 138 62 chr9 16316386 16316611 -125954833 - L1ME4a LINE L1 -223 5898 5657 236 216 155 10 chr9 16316905 16317002 -125954442 - L1MC/D LINE L1 -1884 5924 5814 1699 45 10 0 chr9 16317157 16317357 -125954087 - L1PA4 LINE L1 0 6155 5954 241 273 99 16 chr9 16317405 16317526 -125953918 - L1ME4a LINE L1 -2274 5534 5404 30 0 0 0 chr9 16317593 16317623 -125953821 + AT_rich Low_complexity Low_complexity 1 30 0 1935 152 7 0 chr9 16317625 16317914 -125953530 - AluSx SINE Alu -21 291 1 1305 160 82 57 chr9 16317921 16318202 -125953242 - AluJo SINE Alu -24 288 1 950 195 32 41 chr9 16319277 16319498 -125951946 + MER20 DNA MER1_type 1 219 0 1327 214 0 16 chr9 16319722 16319965 -125951479 - MER8 DNA MER2_type 0 239 1 695 236 129 18 chr9 16320455 16320680 -125950764 - MIR SINE MIR 0 262 13 859 214 86 19 chr9 16320851 16321061 -125950383 + MIR SINE MIR 38 261 -1 201 296 0 42 chr9 16321857 16321928 -125949516 + L2 LINE L2 3245 3312 -1 25 0 0 0 chr9 16322187 16322212 -125949232 + GC_rich Low_complexity Low_complexity 1 25 0 376 206 274 0 chr9 16323414 16323516 -125947928 + L2 LINE L2 3168 3297 -16 21 57 0 0 chr9 16323947 16323982 -125947462 + AT_rich Low_complexity Low_complexity 1 35 0 287 288 163 0 chr9 16324273 16324433 -125947011 + L1ME LINE L1 5608 5793 -328 462 264 132 0 chr9 16324690 16324834 -125946610 + Charlie1 DNA MER1_type 1434 1596 -1165 439 235 0 0 chr9 16324834 16324919 -125946525 + FLAM_A SINE Alu 39 123 -19 1484 192 197 22 chr9 16324952 16325499 -125945945 + Charlie1 DNA MER1_type 1624 2266 -495 3594 56 0 0 chr9 16325935 16326382 -125945062 - L1PA6 LINE L1 0 6154 5708 253 247 22 45 chr9 16326432 16326521 -125944923 + MIR SINE MIR 76 162 -100 21 36 0 0 chr9 16326914 16326942 -125944502 + AT_rich Low_complexity Low_complexity 1 28 0 2188 98 0 0 chr9 16326942 16327216 -125944228 + AluSq SINE Alu 1 274 -39 1880 114 46 0 chr9 16327239 16327501 -125943943 - AluSx SINE Alu -8 304 31 350 272 39 19 chr9 16329578 16329681 -125941763 - MIR SINE MIR -71 191 87 271 321 30 30 chr9 16330201 16330332 -125941112 - L1ME LINE L1 -376 5745 5615 240 143 0 0 chr9 16330335 16330377 -125941067 + (TG)n Simple_repeat Simple_repeat 1 42 0 343 208 141 10 chr9 16330408 16330591 -125940853 - L1M2 LINE L1 -798 5493 5293 336 324 50 27 chr9 16330670 16330932 -125940512 - L1ME LINE L1 -990 5156 4889 486 292 133 22 chr9 16332026 16332252 -125939192 + MIR SINE MIR 12 262 0 279 189 54 14 chr9 16332931 16333005 -125938439 + Charlie5 DNA MER1_type 36 112 -2500 1276 150 158 47 chr9 16333031 16333284 -125938160 - AluJo SINE Alu -30 282 2 340 132 143 0 chr9 16333343 16333434 -125938010 + Charlie5 DNA MER1_type 2416 2519 -93 221 222 159 79 chr9 16334042 16334168 -125937276 - MIR SINE MIR -14 248 113 2100 116 20 0 chr9 16334198 16334491 -125936953 - AluSq SINE Alu -14 299 1 297 203 101 13 chr9 16334987 16335066 -125936378 + MER117 DNA MER1_type 5 90 -107 1674 148 63 25 chr9 16335481 16335765 -125935679 - AluJb SINE Alu -17 295 1 936 174 34 6 chr9 16336390 16336568 -125934876 + MER2 DNA MER2_type 28 210 -135 568 196 220 0 chr9 16336676 16336849 -125934595 - MER58C DNA MER1_type -4 211 1 2064 108 7 0 chr9 16336931 16337235 -125934209 + AluSc SINE Alu 1 306 0 189 312 151 0 chr9 16338256 16338349 -125933095 + MIR SINE MIR 34 140 -122 231 351 0 26 chr9 16338367 16338477 -125932967 - MIR SINE MIR -109 153 47 396 299 185 0 chr9 16338477 16338634 -125932810 - MER5A DNA MER1_type 0 189 4 571 200 97 40 chr9 16338643 16338818 -125932626 - MER5A DNA MER1_type 0 189 5 203 228 54 54 chr9 16339005 16339097 -125932347 + MIR SINE MIR 170 261 -1 2171 116 3 0 chr9 16340514 16340808 -125930636 + AluSq SINE Alu 1 295 -18 184 245 57 0 chr9 16340889 16340942 -125930502 - MIR3 SINE MIR -15 193 138 22 0 0 0 chr9 16341686 16341708 -125929736 + AT_rich Low_complexity Low_complexity 1 22 0 1823 256 185 74 chr9 16342678 16342744 -125928700 + L2 LINE L2 635 692 -2622 1912 157 27 0 chr9 16342744 16343038 -125928406 + AluJb SINE Alu 11 312 0 1823 256 185 74 chr9 16343038 16343049 -125928395 + L2 LINE L2 692 700 -2614 252 0 0 0 chr9 16343049 16343077 -125928367 + (TA)n Simple_repeat Simple_repeat 1 28 0 1823 256 185 74 chr9 16343077 16344213 -125927231 + L2 LINE L2 700 2066 -1248 1562 168 14 31 chr9 16344213 16344505 -125926939 - AluJo SINE Alu -21 291 5 1823 256 185 74 chr9 16344505 16344865 -125926579 + L2 LINE L2 2066 2385 -929 7063 25 7 0 chr9 16344865 16345694 -125925750 - L1PA4 LINE L1 -2 6153 5319 1086 246 28 7 chr9 16345696 16345984 -125925460 + L2 LINE L2 2393 2686 -628 34067 77 3 7 chr9 16345984 16351491 -125919953 + L1PA6 LINE L1 666 6146 -8 966 167 33 0 chr9 16351491 16351671 -125919773 + Tigger1 DNA MER2_type 2232 2417 -1 1994 158 3 0 chr9 16351779 16352082 -125919362 + AluSx SINE Alu 1 304 -8 218 32 32 0 chr9 16352425 16352456 -125918988 + (TTA)n Simple_repeat Simple_repeat 1 32 0 2183 88 28 3 chr9 16352458 16352743 -125918701 - AluY SINE Alu -19 292 1 1975 190 55 39 chr9 16352899 16353388 -125918056 + MLT1D LTR MaLR 7 503 -2 734 231 172 13 chr9 16353395 16353633 -125917811 + MLT1G LTR MaLR 10 285 -305 198 156 0 0 chr9 16353646 16353691 -125917753 + GA-rich Low_complexity Low_complexity 2 46 0 880 149 25 65 chr9 16353773 16353974 -125917470 + L1MA2 LINE L1 6101 6293 -11 432 262 87 29 chr9 16354001 16354173 -125917271 + MLT1G LTR MaLR 379 560 -7 24 0 0 0 chr9 16355386 16355410 -125916034 + AT_rich Low_complexity Low_complexity 1 24 0 29 70 0 0 chr9 16356245 16356302 -125915142 + AT_rich Low_complexity Low_complexity 1 57 0 739 269 52 24 chr9 16356890 16357139 -125914305 + MIR SINE MIR 4 259 -3 386 359 70 0 chr9 16357140 16357296 -125914148 - MIR3 SINE MIR -10 198 32 21459 35 1 0 chr9 16357319 16360728 -125910716 + L1PA4 LINE L1 2737 6155 0 823 133 0 44 chr9 16361191 16361326 -125910118 - FLAM_C SINE Alu -4 129 1 283 288 44 12 chr9 16362280 16362440 -125909004 + L1MC4a LINE L1 5666 5830 -1978 180 0 0 0 chr9 16362494 16362514 -125908930 + (TA)n Simple_repeat Simple_repeat 2 21 0 285 236 45 45 chr9 16362593 16362703 -125908741 + L1MC4a LINE L1 6067 6176 -1632 1036 184 0 31 chr9 16362852 16363048 -125908396 + AluJo SINE Alu 1 190 -122 708 191 93 131 chr9 16363263 16363630 -125907814 + L1MC5 LINE L1 6650 7002 -959 560 188 8 16 chr9 16363810 16363938 -125907506 + L1ME1 LINE L1 6033 6159 -7 1710 244 136 31 chr9 16363961 16364529 -125906915 + L2 LINE L2 1713 2357 -957 1916 210 38 46 chr9 16364529 16364967 -125906477 + MLT1D LTR MaLR 5 440 -65 2362 93 0 3 chr9 16364967 16365279 -125906165 - AluY SINE Alu 0 311 1 1916 210 38 46 chr9 16365279 16365344 -125906100 + MLT1D LTR MaLR 440 504 -1 1710 244 136 31 chr9 16365344 16365413 -125906031 + L2 LINE L2 2357 2417 -897 308 315 108 0 chr9 16365429 16365540 -125905904 + L2 LINE L2 3191 3313 0 2235 131 0 0 chr9 16365775 16366087 -125905357 - AluSx SINE Alu 0 312 1 892 181 34 0 chr9 16366195 16366372 -125905072 - Tigger1 DNA MER2_type -1 2417 2235 5342 64 4 3 chr9 16366372 16367071 -125904373 - L1PA6 LINE L1 -5 6149 5450 384 264 122 0 chr9 16367348 16367545 -125903899 - MER112 DNA MER1_type 0 260 40 981 241 38 13 chr9 16367990 16368226 -125903218 + MIR SINE MIR 9 250 -12 1272 157 90 4 chr9 16368291 16368546 -125902898 - L1M4 LINE L1 -985 5161 4885 1670 109 0 38 chr9 16369045 16369284 -125902160 - AluSg/x SINE Alu -5 307 78 927 161 12 48 chr9 16370167 16370335 -125901109 + FRAM SINE Alu 1 160 -16 1850 91 9 3 chr9 16370702 16371140 -125900304 - L1P LINE L1 -744 5410 4418 5464 90 1 13 chr9 16371140 16371574 -125899870 + L1PA7 LINE L1 5395 5820 -334 2286 78 3 7 chr9 16371574 16371870 -125899574 + AluSc SINE Alu 1 295 -14 5464 90 1 13 chr9 16371870 16372202 -125899242 + L1PA7 LINE L1 5820 6154 0 211 305 146 12 chr9 16372444 16372526 -125898918 + MIR3 SINE MIR 14 106 -102 25 0 0 0 chr9 16372821 16372846 -125898598 + AT_rich Low_complexity Low_complexity 1 25 0 1828 141 46 0 chr9 16373313 16373596 -125897848 + AluJb SINE Alu 1 296 -16 1734 208 31 50 chr9 16374042 16374524 -125896920 + L1MC4 LINE L1 7445 7917 -125 543 154 44 15 chr9 16374591 16374725 -125896719 + L1MC4 LINE L1 7668 7783 -2 267 245 157 14 chr9 16375657 16375804 -125895640 - L2 LINE L2 -815 2499 2332 2179 107 0 7 chr9 16376765 16377056 -125894388 + AluJo SINE Alu 1 289 -23 508 155 103 10 chr9 16377249 16377346 -125894098 - U6 snRNA snRNA -1 106 1 2090 125 0 37 chr9 16380437 16380758 -125890686 - AluSx SINE Alu -1 311 3 2135 127 0 3 chr9 16380873 16381172 -125890272 + AluSg SINE Alu 1 298 -12 200 250 45 0 chr9 16381449 16381493 -125889951 + L2 LINE L2 3219 3264 -8 1215 67 11 11 chr9 16382139 16382319 -125889125 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 454 157 13 7 chr9 16382319 16382465 -125888979 + GA-rich Low_complexity Low_complexity 1 146 0 234 206 81 169 chr9 16383305 16383465 -125887979 - MER5A DNA MER1_type 0 189 33 508 261 97 32 chr9 16383828 16384217 -125887227 + MLT1K LTR MaLR 99 588 0 270 261 22 22 chr9 16384263 16384355 -125887089 - L2 LINE L2 -673 2641 2550 2036 135 0 28 chr9 16384445 16384764 -125886680 + AluSx SINE Alu 1 310 -2 2361 82 3 0 chr9 16384889 16385183 -125886261 + AluSc SINE Alu 5 299 -10 21 57 0 0 chr9 16386407 16386442 -125885002 + AT_rich Low_complexity Low_complexity 1 35 0 949 223 47 0 chr9 16386573 16386766 -125884678 + MER58A DNA MER1_type 1 202 -22 876 281 62 9 chr9 16386884 16387204 -125884240 - L1MC/D LINE L1 -2144 5664 5328 615 223 122 101 chr9 16387226 16387652 -125883792 - LTR37B LTR ERV1 -33 435 1 725 130 0 8 chr9 16388565 16388696 -125882748 + (TTCC)n Simple_repeat Simple_repeat 2 131 0 1026 133 0 0 chr9 16388700 16388843 -125882601 - AluSg/x SINE Alu -44 268 126 21 0 0 0 chr9 16388851 16388872 -125882572 + AT_rich Low_complexity Low_complexity 1 21 0 2039 132 3 0 chr9 16388879 16389166 -125882278 - AluSx SINE Alu -24 288 1 23 0 0 0 chr9 16389357 16389380 -125882064 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr9 16390053 16390075 -125881369 + AT_rich Low_complexity Low_complexity 1 22 0 1837 113 102 4 chr9 16392018 16392292 -125879152 - AluSq SINE Alu -12 301 1 326 171 129 14 chr9 16392792 16392862 -125878582 - LTR33A LTR ERVL -2 521 444 547 283 102 20 chr9 16393551 16393859 -125877585 + L2 LINE L2 2709 3041 -272 377 285 135 5 chr9 16393879 16394086 -125877358 + L1M4 LINE L1 4425 4658 -1488 1876 176 68 47 chr9 16394308 16394759 -125876685 + L1MB7 LINE L1 5625 6124 -46 2046 142 3 3 chr9 16394759 16395055 -125876389 + AluSx SINE Alu 1 296 -16 1876 176 68 47 chr9 16395055 16395101 -125876343 + L1MB7 LINE L1 6124 6168 -2 2006 135 3 0 chr9 16395107 16395396 -125876048 + AluSg SINE Alu 1 290 -20 180 111 0 0 chr9 16395508 16395535 -125875909 + (T)n Simple_repeat Simple_repeat 1 27 0 763 268 0 25 chr9 16395683 16395959 -125875485 - L1P LINE L1 -1936 4210 3942 18603 90 5 6 chr9 16395967 16398576 -125872868 + L1P LINE L1 2762 5367 -779 1158 52 0 0 chr9 16398576 16398710 -125872734 + AluYa5 SINE Alu 1 134 -177 1333 89 0 0 chr9 16399772 16399940 -125871504 + AluSg/x SINE Alu 143 310 0 807 246 41 9 chr9 16400018 16400238 -125871206 + L1ME1 LINE L1 5935 6161 -5 690 281 104 5 chr9 16400252 16400473 -125870971 + MLT1I LTR MaLR 167 409 0 1677 168 106 38 chr9 16401027 16401396 -125870048 - MSTD LTR MaLR 0 396 3 2072 139 0 0 chr9 16401527 16401821 -125869623 - AluSx SINE Alu -18 294 1 1192 249 7 20 chr9 16402221 16402514 -125868930 + AluSx SINE Alu 1 289 -13 5985 179 28 63 chr9 16402521 16402714 -125868730 + L1M3 LINE L1 3994 4192 -1976 2329 105 0 0 chr9 16402714 16403018 -125868426 + AluSg SINE Alu 4 307 -3 5985 179 28 63 chr9 16403018 16404196 -125867248 + L1M3 LINE L1 4192 5324 -844 1750 195 0 0 chr9 16404196 16404488 -125866956 + AluJb SINE Alu 1 292 -20 5985 179 28 63 chr9 16404488 16404665 -125866779 + L1M3 LINE L1 5324 5506 -662 2357 124 58 0 chr9 16404665 16405011 -125866433 + MSTC LTR MaLR 1 366 -62 305 170 0 0 chr9 16405010 16405063 -125866381 + Alu SINE Alu 250 302 0 * 22 35 0 0 chr9 16405182 16405211 -125866233 + AT_rich Low_complexity Low_complexity 1 29 0 241 327 33 65 chr9 16406346 16406499 -125864945 - MIR3 SINE MIR -4 204 57 662 293 150 34 chr9 16407566 16408067 -125863377 - L1ME4a LINE L1 -70 6051 5493 228 361 92 8 chr9 16408262 16408381 -125863063 + L2 LINE L2 3139 3267 -5 337 174 139 76 chr9 16408571 16408715 -125862729 + MER112 DNA MER1_type 7 159 -101 192 211 39 19 chr9 16409809 16409861 -125861583 - MIR SINE MIR -112 150 98 515 207 27 9 chr9 16409878 16409989 -125861455 + MLT1J LTR MaLR 17 129 -382 1876 181 11 43 chr9 16410024 16410399 -125861045 - MLT1A2 LTR MaLR -11 363 1 484 336 179 6 chr9 16410399 16410717 -125860727 + MLT1J LTR MaLR 139 511 0 254 337 10 20 chr9 16410717 16410815 -125860629 - MIR SINE MIR -164 98 2 195 285 135 75 chr9 16412136 16412455 -125858989 + L3b LINE CR1 1133 1470 -113 2080 137 13 0 chr9 16412472 16412778 -125858666 + AluSx SINE Alu 1 310 -2 1786 235 73 7 chr9 16413157 16413579 -125857865 - LTR40c LTR ERVL -12 453 4 734 260 140 1 chr9 16413959 16414203 -125857241 + L1M4 LINE L1 4703 4989 -1157 979 130 19 0 chr9 16414274 16414428 -125857016 + LTR54B LTR ERV1 1 157 -341 805 250 0 0 chr9 16414430 16414594 -125856850 + FRAM SINE Alu 2 165 -11 1468 177 53 3 chr9 16414594 16414893 -125856551 + LTR54B LTR ERV1 185 498 0 21 36 0 0 chr9 16414898 16414926 -125856518 + AT_rich Low_complexity Low_complexity 1 28 0 386 188 38 0 chr9 16414946 16415026 -125856418 + L1ME LINE L1 5740 5822 -344 735 186 16 0 chr9 16415036 16415160 -125856284 + FLAM_C SINE Alu 2 127 -6 1443 188 19 50 chr9 16415174 16415452 -125855992 + AluJo SINE Alu 1 269 -43 1854 131 163 27 chr9 16415452 16415751 -125855693 + MSTA LTR MaLR 3 365 -63 2359 106 0 0 chr9 16415751 16416054 -125855390 - AluSx SINE Alu -9 303 1 1854 131 163 27 chr9 16416054 16416129 -125855315 + MSTA LTR MaLR 365 428 0 1443 188 19 50 chr9 16416129 16416169 -125855275 + AluJo SINE Alu 269 309 -3 317 94 38 0 chr9 16416170 16416223 -125855221 + GA-rich Low_complexity Low_complexity 4 58 0 316 136 0 25 chr9 16416227 16416308 -125855136 + (CTG)n Simple_repeat Simple_repeat 2 80 0 1146 122 0 0 chr9 16416322 16416502 -125854942 + (TCC)n Simple_repeat Simple_repeat 1 180 0 379 141 13 39 chr9 16416631 16416709 -125854735 - L1MC1 LINE L1 -235 6098 6023 1751 164 7 27 chr9 16416874 16417173 -125854271 + AluJo SINE Alu 1 293 -19 681 281 134 9 chr9 16417998 16418229 -125853215 + MIR SINE MIR 3 262 0 375 320 28 11 chr9 16419395 16419576 -125851868 + MARNA DNA Mariner 389 572 -14 784 264 25 36 chr9 16419951 16420228 -125851216 + L2 LINE L2 2191 2464 -850 570 234 144 0 chr9 16420231 16420398 -125851046 + L2 LINE L2 2605 2795 -519 2279 212 25 39 chr9 16420437 16420677 -125850767 + LTR40a LTR ERVL 7 249 -270 2075 125 0 7 chr9 16420677 16420980 -125850464 + AluSg SINE Alu 1 301 -9 2279 212 25 39 chr9 16420980 16421258 -125850186 + LTR40a LTR ERVL 249 518 -1 739 264 36 48 chr9 16421259 16421592 -125849852 + L2 LINE L2 2826 3154 -159 888 233 82 0 chr9 16421594 16421800 -125849644 - MER58A DNA MER1_type -1 223 1 2169 177 14 8 chr9 16422037 16422398 -125849046 + MLT1A1 LTR MaLR 3 365 0 368 185 31 154 chr9 16422626 16422733 -125848711 + L1ME LINE L1 5610 5684 -437 1565 174 21 7 chr9 16422733 16423014 -125848430 + AluJb SINE Alu 1 285 -27 368 185 31 154 chr9 16423014 16423101 -125848343 + L1ME LINE L1 5684 5780 -341 278 155 17 0 chr9 16423109 16423167 -125848277 - L1MD3 LINE L1 -10 7985 7927 2179 122 3 7 chr9 16423170 16423473 -125847971 + AluSx SINE Alu 1 302 -10 1536 234 92 34 chr9 16423498 16423946 -125847498 - MLT1E2 LTR MaLR 0 626 153 458 199 19 2 chr9 16424055 16424176 -125847268 - L1M LINE L1 -795 5379 5254 22 70 0 0 chr9 16424331 16424374 -125847070 + AT_rich Low_complexity Low_complexity 1 43 0 1312 256 19 19 chr9 16424525 16424944 -125846500 + L1PBb LINE L1 480 989 -5214 1530 179 10 10 chr9 16424957 16425269 -125846175 + L1PBb LINE L1 1042 1353 -4850 1714 169 23 19 chr9 16425530 16425838 -125845606 - HUERS-P3 LTR ERV1 -8382 537 229 5730 72 27 11 chr9 16425904 16427653 -125843791 + SVA Other Other 1 1762 0 5780 183 9 46 chr9 16427653 16429613 -125841831 + L1PBb LINE L1 1333 3222 -2981 2174 137 0 0 chr9 16429613 16429913 -125841531 + AluSx SINE Alu 1 300 -12 5780 183 9 46 chr9 16429913 16430291 -125841153 + L1PBb LINE L1 3222 3612 -2591 1121 177 0 30 chr9 16431085 16431283 -125840161 - AluSg/x SINE Alu -20 290 99 1805 184 3 0 chr9 16431852 16432146 -125839298 - AluJo SINE Alu -17 295 1 420 294 153 26 chr9 16433110 16433488 -125837956 + L1MC4a LINE L1 5511 5936 -1872 1037 159 0 33 chr9 16434717 16434899 -125836545 - FRAM SINE Alu -3 173 1 627 199 60 7 chr9 16435118 16435269 -125836175 - L1PB4 LINE L1 -7 6149 5991 2762 160 21 0 chr9 16435996 16436466 -125834978 + ERVL LTR ERVL 3697 4176 -1588 246 214 18 0 chr9 16437891 16437947 -125833497 + L1MC5 LINE L1 7311 7367 -594 1432 257 20 20 chr9 16438140 16438584 -125832860 + L1MC4a LINE L1 7365 7808 0 15146 123 21 7 chr9 16438923 16439775 -125831669 + Tigger1 DNA MER2_type 2 840 -1578 2334 102 0 3 chr9 16439775 16440080 -125831364 + AluSg SINE Alu 1 304 -6 15146 123 21 7 chr9 16440080 16441610 -125829834 + Tigger1 DNA MER2_type 840 2418 0 289 265 36 0 chr9 16441851 16441934 -125829510 + L1ME LINE L1 308 393 -5979 244 213 25 25 chr9 16441982 16442062 -125829382 + L1ME LINE L1 1262 1341 -5043 891 254 145 43 chr9 16442064 16442563 -125828881 + L1ME LINE L1 1565 2011 -4552 2088 119 0 3 chr9 16442563 16442848 -125828596 + AluSg SINE Alu 1 284 -26 234 0 0 0 chr9 16442848 16442874 -125828570 + (TA)n Simple_repeat Simple_repeat 2 27 0 891 254 145 43 chr9 16442874 16443124 -125828320 + L1ME LINE L1 2010 2392 -4171 1111 224 67 14 chr9 16443188 16443559 -125827885 + L1ME LINE L1 2471 2861 -3521 282 93 0 23 chr9 16443571 16443614 -125827830 - MER3 DNA MER1_type -167 42 1 2722 42 0 0 chr9 16443840 16444151 -125827293 + AluY SINE Alu 1 311 0 226 313 61 10 chr9 16444879 16444978 -125826466 + MIR3 SINE MIR 102 205 -3 2366 94 0 0 chr9 16445106 16445415 -125826029 + AluSc SINE Alu 1 309 0 2141 112 0 0 chr9 16446817 16447094 -125824350 + AluSx SINE Alu 1 277 -35 1285 88 0 52 chr9 16447763 16447955 -125823489 - AluSq SINE Alu -131 182 1 2438 86 0 0 chr9 16448641 16448942 -125822502 + AluSp SINE Alu 1 301 -12 254 287 201 10 chr9 16449390 16449607 -125821837 + MIR SINE MIR 2 257 -5 926 189 10 36 chr9 16451139 16451229 -125820215 - AluSg/x SINE Alu -9 303 212 2153 128 21 39 chr9 16451229 16451611 -125819833 + THE1C LTR MaLR 1 375 0 926 189 10 36 chr9 16451611 16451716 -125819728 - AluSg/x SINE Alu -100 212 113 2492 73 3 0 chr9 16452098 16452399 -125819045 + AluY SINE Alu 1 302 -9 1406 257 123 13 chr9 16452688 16453151 -125818293 + MLT1G1 LTR MaLR 73 586 -9 571 302 117 66 chr9 16453158 16453569 -125817875 + L3 LINE CR1 985 1416 -161 183 156 0 0 chr9 16454025 16454057 -125817387 + A-rich Low_complexity Low_complexity 1 32 0 308 274 39 10 chr9 16454161 16454263 -125817181 + MIR SINE MIR 81 185 -77 184 344 56 11 chr9 16454402 16454492 -125816952 + L2 LINE L2 3142 3235 -37 254 269 126 42 chr9 16454676 16454795 -125816649 + L2 LINE L2 3170 3298 -15 344 22 0 22 chr9 16454796 16454842 -125816602 + (TGAA)n Simple_repeat Simple_repeat 1 45 0 2249 102 0 0 chr9 16457109 16457402 -125814042 + AluSg SINE Alu 1 293 -17 336 209 8 82 chr9 16457455 16457494 -125813950 - L1ME4a LINE L1 -45 6076 6036 2067 89 7 0 chr9 16457494 16457763 -125813681 + AluSp SINE Alu 21 291 -22 336 209 8 82 chr9 16457763 16457857 -125813587 - L1ME4a LINE L1 -85 6036 5953 308 268 0 12 chr9 16457859 16457941 -125813503 - L1MC4 LINE L1 -1348 6694 6614 358 289 35 18 chr9 16458102 16458216 -125813228 - L2 LINE L2 -35 3237 3122 2246 92 0 3 chr9 16458560 16458853 -125812591 + AluY SINE Alu 1 292 -19 931 168 32 5 chr9 16458853 16459064 -125812380 + L1MC3 LINE L1 6138 6333 -11 1925 201 53 25 chr9 16459306 16459794 -125811650 + MLT1D LTR MaLR 1 502 -3 363 23 0 0 chr9 16461022 16461066 -125810378 + (CA)n Simple_repeat Simple_repeat 2 45 0 21 82 0 0 chr9 16461319 16461368 -125810076 + AT_rich Low_complexity Low_complexity 1 49 0 1590 139 45 137 chr9 16462202 16462604 -125808840 + MLT1A1 LTR MaLR 1 365 0 305 317 68 92 chr9 16462621 16462959 -125808485 - L2 LINE L2 0 3272 2943 397 287 67 26 chr9 16462988 16463183 -125808261 - L2 LINE L2 -424 2890 2688 299 173 126 31 chr9 16463185 16463312 -125808132 + L1MC5 LINE L1 7561 7699 -262 505 251 54 25 chr9 16463352 16463650 -125807794 + L1MC5 LINE L1 7702 7925 -36 1786 170 10 3 chr9 16463650 16463939 -125807505 - AluJb SINE Alu -20 292 2 214 332 70 11 chr9 16464192 16464379 -125807065 + L2 LINE L2 2142 2339 -975 306 321 153 21 chr9 16464623 16464813 -125806631 + MIR SINE MIR 38 252 -10 2268 117 0 3 chr9 16464837 16465145 -125806299 - AluSg SINE Alu -3 307 1 282 205 168 0 chr9 16465256 16465341 -125806103 + MLT1I LTR MaLR 40 166 -299 614 312 35 52 chr9 16465720 16466201 -125805243 - MLT1K LTR MaLR -3 473 1 1655 160 0 35 chr9 16466507 16466795 -125804649 + AluJb SINE Alu 1 278 -34 189 214 0 0 chr9 16466797 16466839 -125804605 + GA-rich Low_complexity Low_complexity 3 44 0 232 269 75 21 chr9 16467378 16467471 -125803973 + L2 LINE L2 3146 3243 -29 2518 223 75 43 chr9 16468010 16468885 -125802559 - L1MD2 LINE L1 -412 5947 5008 2035 118 11 0 chr9 16468885 16469192 -125802252 - AluSx SINE Alu 0 310 1 2518 223 75 43 chr9 16469192 16469867 -125801577 - L1MD2 LINE L1 -1351 5008 4356 2225 82 3 10 chr9 16469912 16470216 -125801228 - AluY SINE Alu -9 302 1 21 0 0 0 chr9 16470216 16470237 -125801207 + AT_rich Low_complexity Low_complexity 1 21 0 225 353 95 14 chr9 16471369 16471652 -125799792 + L1MC/D LINE L1 5510 5815 -1993 2353 75 0 10 chr9 16474317 16474612 -125796832 - AluSp SINE Alu -9 304 13 1147 177 27 4 chr9 16474751 16475011 -125796433 + L1MA4 LINE L1 6028 6293 -7 225 321 27 0 chr9 16475047 16475159 -125796285 + GA-rich Low_complexity Low_complexity 1 115 0 555 29 0 0 chr9 16476214 16476283 -125795161 + (TG)n Simple_repeat Simple_repeat 1 69 0 1407 166 55 60 chr9 16476314 16476731 -125794713 + LTR37A LTR ERV1 3 417 -9 1373 154 82 26 chr9 16476892 16477159 -125794285 + AluJo SINE Alu 13 294 -18 2117 108 3 10 chr9 16477186 16477474 -125793970 + AluSq SINE Alu 14 299 -14 2180 119 0 19 chr9 16477479 16477791 -125793653 + AluSx SINE Alu 4 309 -3 326 267 150 0 chr9 16478098 16478218 -125793226 + L2 LINE L2 3169 3306 -7 664 279 99 36 chr9 16478633 16478966 -125792478 - L2 LINE L2 -9 3304 2951 185 237 0 0 chr9 16479616 16479654 -125791790 - MER5A DNA MER1_type -3 186 149 1963 73 150 0 chr9 16479829 16480089 -125791355 + AluSg SINE Alu 2 300 0 194 278 196 21 chr9 16480173 16480270 -125791174 + MIR SINE MIR 30 143 -65 23 0 0 0 chr9 16480528 16480551 -125790893 + AT_rich Low_complexity Low_complexity 1 23 0 426 252 0 55 chr9 16481022 16481149 -125790295 + MIR SINE MIR 65 184 -78 229 217 130 0 chr9 16481436 16481505 -125789939 + MER21A LTR ERV1 182 259 -672 211 259 24 82 chr9 16482328 16482413 -125789031 + MIR SINE MIR 97 176 -86 336 144 167 0 chr9 16482576 16482666 -125788778 - L1MD3 LINE L1 -12 7983 7879 553 158 59 0 chr9 16482666 16482767 -125788677 - L1MC4 LINE L1 -473 7569 7463 677 172 0 0 chr9 16482767 16482866 -125788578 + 5S rRNA rRNA 1 99 -22 2158 229 102 8 chr9 16482866 16483516 -125787928 - L1MC4a LINE L1 -421 7387 6677 864 115 21 110 chr9 16484172 16484363 -125787081 - L1MB2 LINE L1 0 6171 5998 842 153 55 43 chr9 16485661 16485824 -125785620 + MER46A DNA MER2_type 1 165 -71 21 0 0 0 chr9 16486528 16486549 -125784895 + AT_rich Low_complexity Low_complexity 1 21 0 268 152 13 114 chr9 16487380 16487459 -125783985 + L1ME4a LINE L1 5941 6011 -110 29 47 0 0 chr9 16487509 16487552 -125783892 + AT_rich Low_complexity Low_complexity 1 43 0 372 311 122 33 chr9 16488125 16488517 -125782927 - L1ME4a LINE L1 -60 6061 5635 209 56 0 28 chr9 16488875 16488911 -125782533 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 2359 82 0 3 chr9 16488930 16489224 -125782220 + AluSq SINE Alu 5 297 -16 21 71 0 0 chr9 16489859 16489901 -125781543 + AT_rich Low_complexity Low_complexity 1 42 0 2324 93 0 0 chr9 16490082 16490371 -125781073 + AluSq SINE Alu 1 289 -24 704 231 68 4 chr9 16490375 16490692 -125780752 + MER93b LTR ERV1 7 373 0 1191 216 93 41 chr9 16491171 16491514 -125779930 + LTR37B LTR ERV1 22 382 -86 313 327 97 29 chr9 16491587 16491936 -125779508 - L1ME4a LINE L1 -1299 4847 4475 2733 146 46 84 chr9 16492114 16492602 -125778842 - L1MB8 LINE L1 0 6178 5720 2356 89 0 13 chr9 16492602 16492906 -125778538 + AluSx SINE Alu 1 300 -12 2733 146 46 84 chr9 16492906 16493070 -125778374 - L1MB8 LINE L1 -458 5720 5551 829 164 15 0 chr9 16493081 16493215 -125778229 - AluJo SINE Alu -176 136 1 1036 192 106 9 chr9 16493216 16493498 -125777946 - L1MB8 LINE L1 -629 5555 5254 22 70 0 0 chr9 16493653 16493696 -125777748 + AT_rich Low_complexity Low_complexity 1 43 0 2701 224 71 14 chr9 16493847 16494591 -125776853 + L1PB4 LINE L1 480 1353 -4850 1714 169 23 19 chr9 16494852 16495160 -125776284 - HUERS-P3 LTR ERV1 -8382 537 229 5255 53 12 5 chr9 16495226 16496343 -125775101 + SVA Other Other 1 1401 0 216 0 0 0 chr9 16496346 16496370 -125775074 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 10191 211 21 30 chr9 16496372 16498330 -125773114 + L1PB4 LINE L1 1348 3238 -2965 2161 137 0 0 chr9 16498330 16498630 -125772814 + AluSx SINE Alu 1 300 -12 10191 211 21 30 chr9 16498630 16500000 -125771444 + L1PB4 LINE L1 3238 4619 -1584 1796 181 3 0 chr9 16500000 16500293 -125771151 + AluJb SINE Alu 1 294 -18 5088 156 17 11 chr9 16500294 16501220 -125770224 + L1PB4 LINE L1 5282 6212 -1 287 292 123 27 chr9 16502797 16503016 -125768428 + L3 LINE CR1 795 1034 -543 2229 112 0 10 chr9 16503042 16503337 -125768107 - AluSx SINE Alu -12 300 9 219 278 217 35 chr9 16503370 16503485 -125767959 + L2 LINE L2 3178 3313 0 2039 155 0 3 chr9 16503599 16503909 -125767535 + AluJb SINE Alu 1 309 -3 667 195 82 18 chr9 16504004 16504175 -125767269 + L1MC4 LINE L1 7874 8042 0 819 156 62 34 chr9 16504746 16504925 -125766519 + L1M1 LINE L1 17 200 -7365 1287 182 27 4 chr9 16504927 16505152 -125766292 + AluJo SINE Alu 1 230 -82 317 256 37 60 chr9 16505599 16505772 -125765672 + MIR3 SINE MIR 1 167 -67 197 397 64 19 chr9 16506257 16506413 -125765031 + L2 LINE L2 3033 3195 -77 2202 83 3 17 chr9 16507272 16507582 -125763862 + AluSp SINE Alu 1 306 0 1586 255 123 13 chr9 16507795 16508258 -125763186 + MLT1G1 LTR MaLR 73 586 -9 550 302 117 66 chr9 16508265 16508676 -125762768 + L3 LINE CR1 985 1416 -161 183 156 0 0 chr9 16509132 16509164 -125762280 + A-rich Low_complexity Low_complexity 1 32 0 303 284 39 10 chr9 16509268 16509370 -125762074 + MIR SINE MIR 81 185 -77 249 277 169 0 chr9 16509819 16509902 -125761542 + L2 LINE L2 3161 3257 -15 416 19 0 19 chr9 16509903 16509957 -125761487 + (TGAA)n Simple_repeat Simple_repeat 1 53 0 2269 99 0 0 chr9 16512224 16512517 -125758927 + AluSg SINE Alu 1 293 -17 1606 141 3 31 chr9 16512609 16512899 -125758545 + AluSp SINE Alu 21 302 -11 1919 112 56 0 chr9 16512959 16513253 -125758191 + AluSx SINE Alu 3 311 0 1771 151 3 20 chr9 16513284 16513346 -125758098 + AluJo SINE Alu 13 75 -237 5257 82 14 54 chr9 16513346 16514066 -125757378 + LTR8 LTR ERV1 1 691 0 1771 151 3 20 chr9 16514066 16514295 -125757149 + AluJo SINE Alu 75 299 -13 308 119 0 0 chr9 16514779 16514821 -125756623 + Alu SINE Alu 3 44 -259 1690 81 31 0 chr9 16514823 16515046 -125756398 + LTR8 LTR ERV1 106 335 -356 1988 185 30 22 chr9 16515127 16515489 -125755955 - MLT1A1 LTR MaLR 0 365 1 224 196 84 103 chr9 16515608 16515633 -125755811 - MER5A DNA MER1_type -40 149 125 204 40 0 0 chr9 16515633 16515658 -125755786 + (CAG)n Simple_repeat Simple_repeat 2 26 0 224 196 84 103 chr9 16515658 16515739 -125755705 - MER5A DNA MER1_type -64 125 45 2315 71 3 7 chr9 16515773 16516069 -125755375 - AluY SINE Alu -16 295 1 240 200 0 0 chr9 16516093 16516143 -125755301 + CT-rich Low_complexity Low_complexity 2 51 0 788 205 53 0 chr9 16516147 16516318 -125755126 - L1M4 LINE L1 -1949 4197 4018 782 188 182 11 chr9 16516319 16516500 -125754944 - AluSc SINE Alu -11 298 87 991 210 42 38 chr9 16516503 16516765 -125754679 - L1M4 LINE L1 -2121 4025 3763 198 0 0 0 chr9 16516813 16516835 -125754609 + (TCTCCC)n Simple_repeat Simple_repeat 1 22 0 514 333 119 18 chr9 16516843 16517231 -125754213 + L2 LINE L2 2550 2976 -338 254 258 17 50 chr9 16517350 16517470 -125753974 + L2 LINE L2 3122 3237 -76 902 115 0 89 chr9 16517564 16517603 -125753841 - MSTA LTR MaLR 0 428 387 1960 163 27 0 chr9 16517603 16517904 -125753540 + AluJo SINE Alu 1 309 -3 902 115 0 89 chr9 16517904 16518021 -125753423 - MSTA LTR MaLR -41 387 286 2500 94 12 6 chr9 16518121 16518463 -125752981 - MER4E LTR ERV1 -435 344 1 537 126 0 32 chr9 16518773 16518868 -125752576 + L1PA13 LINE L1 6058 6149 -14 2562 123 27 57 chr9 16518887 16519118 -125752326 + MER4E LTR ERV1 28 264 -502 2130 88 50 0 chr9 16519118 16519401 -125752043 - AluSp SINE Alu -16 297 1 2562 123 27 57 chr9 16519401 16519721 -125751723 + MER4E LTR ERV1 264 741 -25 2213 117 0 0 chr9 16519825 16520123 -125751321 + AluSx SINE Alu 1 298 -14 761 197 31 105 chr9 16520123 16520417 -125751027 - LTR8 LTR ERV1 -174 517 246 1352 74 6 6 chr9 16520538 16520713 -125750731 + AluSq SINE Alu 122 296 -17 592 299 50 84 chr9 16520714 16521118 -125750326 - L2 LINE L2 -616 2698 2309 354 360 13 7 chr9 16521866 16522016 -125749428 - L1MEd LINE L1 -5471 648 498 1284 179 13 0 chr9 16522043 16522278 -125749166 + L1MB7 LINE L1 5591 5828 -356 354 182 0 0 chr9 16522279 16522334 -125749110 + Tigger5 DNA MER2_type 1 55 -2268 * 519 175 48 0 chr9 16522326 16522429 -125749015 + Tigger5 DNA MER2_type 2215 2322 -1 800 231 40 59 chr9 16522458 16522761 -125748683 + L1MB7 LINE L1 5888 6184 0 229 242 161 0 chr9 16522925 16522987 -125748457 + HsTC2 DNA Tc2 1820 1891 -7 318 51 0 0 chr9 16523379 16523418 -125748026 - U2 snRNA snRNA -149 39 1 1838 159 20 0 chr9 16523836 16524132 -125747312 + AluJo SINE Alu 1 302 -10 29 0 0 25 chr9 16524706 16524727 -125746717 + AT_rich Low_complexity Low_complexity 1 22 -17 2312 116 0 0 chr9 16524727 16525038 -125746406 - AluSx SINE Alu -1 311 1 29 0 0 25 chr9 16525038 16525056 -125746388 + AT_rich Low_complexity Low_complexity 22 39 0 216 67 0 0 chr9 16525159 16525189 -125746255 + (TTTTA)n Simple_repeat Simple_repeat 1 30 0 844 186 27 22 chr9 16525701 16525884 -125745560 + MLT2B1 LTR ERVL 337 520 0 316 224 318 29 chr9 16525901 16526071 -125745373 - MIR SINE MIR -7 255 37 529 212 19 112 chr9 16526866 16527009 -125744435 + L1MA9 LINE L1 6039 6147 -165 2371 96 0 10 chr9 16527009 16527312 -125744132 + AluSx SINE Alu 1 300 -12 529 212 19 112 chr9 16527312 16527437 -125744007 + L1MA9 LINE L1 6147 6282 -30 3403 163 15 15 chr9 16528254 16528869 -125742575 + L1MC3 LINE L1 7162 7776 -9 26 0 0 0 chr9 16529105 16529131 -125742313 + AT_rich Low_complexity Low_complexity 1 26 0 1370 245 8 45 chr9 16529301 16529437 -125742007 + MLT1A2 LTR MaLR 33 172 -202 2327 65 3 3 chr9 16529437 16529727 -125741717 + AluY SINE Alu 1 290 -21 1370 245 8 45 chr9 16529727 16529945 -125741499 + MLT1A2 LTR MaLR 172 374 0 273 293 117 19 chr9 16529945 16530262 -125741182 + L1ME4a LINE L1 5567 5914 -207 319 281 8 0 chr9 16531119 16531247 -125740197 + (CA)n Simple_repeat Simple_repeat 2 130 0 530 302 116 32 chr9 16531327 16531940 -125739504 + L2 LINE L2 2545 3205 -108 216 0 0 0 chr9 16532004 16532028 -125739416 + (TGAA)n Simple_repeat Simple_repeat 3 26 0 2312 102 0 10 chr9 16532211 16532524 -125738920 + AluSg SINE Alu 1 310 0 2175 130 0 3 chr9 16532526 16532826 -125738618 + AluSx SINE Alu 1 299 -13 183 80 0 0 chr9 16533247 16533272 -125738172 + (A)n Simple_repeat Simple_repeat 1 25 0 507 142 117 92 chr9 16533282 16533402 -125738042 + FLAM_A SINE Alu 10 132 -10 234 257 34 74 chr9 16533546 16533694 -125737750 - MIR SINE MIR -3 259 118 1565 210 41 34 chr9 16533807 16534011 -125737433 + LTR37B LTR ERV1 51 252 -216 2207 130 15 21 chr9 16534011 16534350 -125737094 - MER1B DNA MER1_type 0 337 1 1565 210 41 34 chr9 16534350 16534559 -125736885 + LTR37B LTR ERV1 252 467 -1 205 171 0 57 chr9 16536091 16536161 -125735283 + CT-rich Low_complexity Low_complexity 1 66 0 2345 97 3 0 chr9 16537682 16537980 -125733464 - AluSp SINE Alu -14 299 1 185 304 128 0 chr9 16539008 16539110 -125732334 + MIR SINE MIR 129 243 -19 204 303 144 53 chr9 16539302 16539434 -125732010 + MIR SINE MIR 4 147 -115 2176 89 18 0 chr9 16539786 16540068 -125731376 + AluSp SINE Alu 1 287 -26 237 314 0 23 chr9 16540245 16540331 -125731113 + MIR3 SINE MIR 84 167 -41 22 35 0 0 chr9 16541268 16541297 -125730147 + AT_rich Low_complexity Low_complexity 1 29 0 491 236 61 24 chr9 16541482 16541647 -125729797 - MIR SINE MIR 0 262 92 278 301 62 14 chr9 16541633 16541779 -125729665 + MIR SINE MIR 97 249 -13 * 372 299 37 0 chr9 16542084 16542191 -125729253 + MIR SINE MIR 18 128 -134 728 198 21 109 chr9 16542451 16542523 -125728921 + MER58A DNA MER1_type 3 80 -2340 2368 108 0 6 chr9 16542523 16542837 -125728607 - AluSx SINE Alu 0 312 1 728 198 21 109 chr9 16542837 16543002 -125728442 + MER58A DNA MER1_type 80 219 -5 186 171 0 0 chr9 16543640 16543681 -125727763 + T-rich Low_complexity Low_complexity 1 41 0 183 42 0 0 chr9 16543818 16543842 -125727602 + (CAA)n Simple_repeat Simple_repeat 2 25 0 404 277 101 0 chr9 16543848 16544007 -125727437 + MIR SINE MIR 82 256 -6 225 0 0 0 chr9 16544265 16544290 -125727154 + (A)n Simple_repeat Simple_repeat 1 25 0 1952 140 7 7 chr9 16544318 16544610 -125726834 - AluSx SINE Alu -14 298 7 777 223 38 46 chr9 16545245 16545483 -125725961 - MIR SINE MIR 0 262 27 423 303 198 29 chr9 16546284 16546829 -125724615 + L1MB7 LINE L1 4758 5394 -752 330 316 155 20 chr9 16546841 16547145 -125724299 + L1MB7 LINE L1 5439 5783 -2025 25 83 0 0 chr9 16547444 16547504 -125723940 + AT_rich Low_complexity Low_complexity 1 60 0 2555 39 0 26 chr9 16547616 16547925 -125723519 + AluY SINE Alu 1 301 -10 273 136 7 0 chr9 16547977 16548035 -125723409 - L1MC4 LINE L1 0 8042 7936 913 116 22 0 chr9 16548044 16548182 -125723262 + L1MA3 LINE L1 6165 6305 0 2461 51 0 3 chr9 16548209 16548504 -125722940 + AluY SINE Alu 1 294 -17 2134 235 82 50 chr9 16548641 16549550 -125721894 - L1MC4 LINE L1 -141 7901 6963 1987 66 7 26 chr9 16550345 16550617 -125720827 + AluY SINE Alu 45 311 0 4296 150 94 9 chr9 16550823 16551577 -125719867 + LTR1B LTR ERV1 1 818 -8 191 210 258 0 chr9 16551726 16551788 -125719656 - MIR3 SINE MIR -45 163 86 399 205 27 27 chr9 16552087 16552199 -125719245 - MIR SINE MIR -87 175 64 25 0 0 0 chr9 16552735 16552760 -125718684 + AT_rich Low_complexity Low_complexity 1 25 0 501 184 1 13 chr9 16552789 16552897 -125718547 + L1MB7 LINE L1 6018 6125 -55 1354 184 100 139 chr9 16552902 16553585 -125717859 + MER4A LTR ERV1 5 660 -4 2467 122 5 19 chr9 16553811 16554180 -125717264 + THE1B LTR MaLR 1 364 0 392 225 45 18 chr9 16554511 16554622 -125716822 + MIR SINE MIR 64 177 -85 6667 124 88 9 chr9 16554879 16555994 -125715450 + Tigger3b DNA MER2_type 28 1230 -1 340 204 91 91 chr9 16556172 16556304 -125715140 + MER5A DNA MER1_type 57 188 -1 2358 148 21 0 chr9 16556333 16556719 -125714725 + MER57A LTR ERV1 1 394 -9 279 241 139 28 chr9 16557532 16557640 -125713804 - MIR SINE MIR -111 151 32 829 185 74 42 chr9 16557815 16558004 -125713440 - MER58A DNA MER1_type -3 221 27 313 333 0 18 chr9 16558028 16558142 -125713302 + MIR3 SINE MIR 2 113 -95 2198 112 0 7 chr9 16559138 16559433 -125712011 - AluSq SINE Alu -20 293 1 810 183 0 107 chr9 16559459 16559656 -125711788 + AluJb SINE Alu 137 312 0 402 270 20 40 chr9 16559924 16560072 -125711372 - MIR3 SINE MIR -18 190 46 2765 184 6 24 chr9 16560502 16560986 -125710458 + MLT2B3 LTR ERVL 1 475 -79 2492 132 6 3 chr9 16560986 16561349 -125710095 - THE1B LTR MaLR 0 364 1 409 139 76 0 chr9 16561349 16561425 -125710019 + MLT2B2 LTR ERVL 421 502 -13 407 230 97 118 chr9 16561473 16561812 -125709632 + L2 LINE L2 2904 3235 -37 2345 92 3 19 chr9 16563240 16563555 -125707889 + AluSq SINE Alu 1 310 -3 385 245 53 0 chr9 16563833 16563927 -125707517 - MER94 DNA DNA -35 99 1 240 322 70 0 chr9 16563987 16564102 -125707342 + L2 LINE L2 3150 3272 0 2211 122 0 3 chr9 16564109 16564420 -125707024 + AluSx SINE Alu 1 310 -2 263 139 0 89 chr9 16564592 16564671 -125706773 - MER106B DNA MER1_type -154 905 834 2144 119 0 10 chr9 16564677 16564971 -125706473 + AluSx SINE Alu 1 291 -21 512 70 0 12 chr9 16564971 16565199 -125706245 + AluSg SINE Alu 1 305 -7 2297 93 3 17 chr9 16565199 16565501 -125705943 + AluSq SINE Alu 1 298 -15 846 115 96 46 chr9 16565504 16565524 -125705920 - MER106B DNA MER1_type -241 818 800 2396 69 0 3 chr9 16565524 16565814 -125705630 + AluSc SINE Alu 1 289 -20 846 115 96 46 chr9 16565814 16566011 -125705433 - MER106B DNA MER1_type -259 800 590 2146 110 17 3 chr9 16566015 16566306 -125705138 - AluSg SINE Alu -15 295 1 5554 124 33 7 chr9 16566306 16567158 -125704286 - Tigger1 DNA MER2_type -1543 875 2 1596 257 20 20 chr9 16567497 16567941 -125703503 - L1MC4a LINE L1 0 7808 7365 269 214 18 0 chr9 16568134 16568190 -125703254 - L1MC5 LINE L1 -594 7367 7311 2981 162 21 0 chr9 16569616 16570086 -125701358 - ERVL LTR ERVL -1588 4176 3697 2174 95 7 0 chr9 16570212 16570496 -125700948 - AluSp SINE Alu -27 286 1 257 227 91 11 chr9 16570717 16570805 -125700639 - MIR SINE MIR -82 180 86 1020 183 6 0 chr9 16570884 16571053 -125700391 - AluJo/FRAM SINE Alu -9 303 134 2216 106 3 0 chr9 16571053 16571354 -125700090 - AluSg SINE Alu -8 302 1 1042 165 102 82 chr9 16571355 16571394 -125700050 - LTR8 LTR ERV1 -431 260 223 2415 146 72 66 chr9 16571394 16571881 -125699563 - LTR2B LTR ERV1 0 490 1 1042 165 102 82 chr9 16571881 16572096 -125699348 - LTR8 LTR ERV1 -468 223 1 233 287 64 0 chr9 16572096 16572190 -125699254 + L2 LINE L2 2310 2409 -905 701 211 7 0 chr9 16572540 16572687 -125698757 + L1PB4 LINE L1 6002 6149 -7 2423 42 0 11 chr9 16572966 16573281 -125698163 + AluY SINE Alu 1 312 0 351 320 49 0 chr9 16573801 16573923 -125697521 + L2 LINE L2 3182 3309 -4 2193 102 0 3 chr9 16573950 16574265 -125697179 - AluSq SINE Alu 0 314 1 423 325 33 7 chr9 16574597 16574748 -125696696 + MER5B DNA MER1_type 12 166 -12 210 352 0 0 chr9 16575163 16575234 -125696210 - MIR SINE MIR -47 215 145 2165 120 3 7 chr9 16575253 16575554 -125695890 + AluSq SINE Alu 1 300 -13 230 157 0 57 chr9 16577077 16577147 -125694297 + GA-rich Low_complexity Low_complexity 1 66 0 1565 210 41 34 chr9 16578679 16578888 -125692556 - LTR37B LTR ERV1 -1 467 261 2207 130 15 21 chr9 16578888 16579227 -125692217 + MER1B DNA MER1_type 1 337 0 1565 210 41 34 chr9 16579227 16579431 -125692013 - LTR37B LTR ERV1 -207 261 51 234 257 34 74 chr9 16579544 16579692 -125691752 + MIR SINE MIR 118 259 -3 504 168 147 0 chr9 16579860 16579955 -125691489 - FLAM_A SINE Alu -24 118 10 183 80 0 0 chr9 16579965 16579990 -125691454 + (T)n Simple_repeat Simple_repeat 1 25 0 1537 68 5 5 chr9 16580503 16580695 -125690749 + AluSq SINE Alu 105 296 -17 492 309 45 79 chr9 16580696 16581100 -125690344 - L2 LINE L2 -616 2698 2309 349 360 13 7 chr9 16581848 16581998 -125689446 - L1MEd LINE L1 -5471 648 498 1238 183 13 0 chr9 16582025 16582260 -125689184 + L1MB7 LINE L1 5591 5828 -356 362 182 0 0 chr9 16582261 16582316 -125689128 + Tigger5 DNA MER2_type 1 55 -2268 * 514 175 48 0 chr9 16582308 16582411 -125689033 + Tigger5 DNA MER2_type 2215 2322 -1 738 230 40 62 chr9 16582440 16582744 -125688700 + L1MB7 LINE L1 5888 6184 0 317 51 0 0 chr9 16583363 16583402 -125688042 - U2 snRNA snRNA -149 39 1 1855 156 20 0 chr9 16583820 16584115 -125687329 + AluJo SINE Alu 1 301 -11 21 0 0 0 chr9 16584689 16584710 -125686734 + AT_rich Low_complexity Low_complexity 1 21 0 2122 83 0 11 chr9 16584710 16584986 -125686458 - AluSx SINE Alu -1 311 39 186 338 81 0 chr9 16585399 16585473 -125685971 + L2 LINE L2 3020 3099 -173 237 284 80 0 chr9 16585951 16586039 -125685405 + L1ME LINE L1 5520 5614 -507 375 244 74 30 chr9 16586042 16586177 -125685267 - MLT1J LTR MaLR 0 511 371 679 278 85 14 chr9 16586273 16586485 -125684959 - MLT1J LTR MaLR -272 239 13 2106 108 0 29 chr9 16586569 16586884 -125684560 - AluSx SINE Alu -5 307 2 608 264 97 31 chr9 16586884 16586945 -125684499 - L1MC4a LINE L1 -1978 5830 5774 1894 167 3 7 chr9 16586945 16587245 -125684199 - AluJb SINE Alu -13 299 1 608 264 97 31 chr9 16587245 16587441 -125684003 - L1MC4a LINE L1 -2034 5774 5556 1605 179 29 4 chr9 16587462 16587767 -125683677 + AluJo SINE Alu 1 312 0 639 189 116 79 chr9 16587892 16588082 -125683362 + MER34B LTR ERV1 11 207 -358 709 241 45 78 chr9 16588225 16588557 -125682887 - L1ME LINE L1 -5484 586 266 385 220 21 64 chr9 16588590 16588641 -125682803 - L1ME LINE L1 -5924 146 94 2288 42 3 18 chr9 16588641 16588963 -125682481 - AluY SINE Alu 0 318 1 385 220 21 64 chr9 16588963 16589051 -125682393 - L1ME LINE L1 -5976 94 12 553 254 6 18 chr9 16589083 16589252 -125682192 + L2 LINE L2 3113 3279 -34 2292 87 3 0 chr9 16589435 16589733 -125681711 - AluSp SINE Alu -14 299 1 3978 154 42 27 chr9 16589848 16590626 -125680818 - L1MB5 LINE L1 0 6174 5385 3458 65 2 37 chr9 16590663 16590938 -125680506 + THE1B-int LTR MaLR 1137 1391 -189 2233 116 3 0 chr9 16590938 16591239 -125680205 - AluSp SINE Alu -7 306 5 3458 65 2 37 chr9 16591239 16591423 -125680021 + THE1B-int LTR MaLR 1391 1580 0 2047 120 7 26 chr9 16591423 16591731 -125679713 + THE1B LTR MaLR 1 302 -62 1003 127 0 0 chr9 16591831 16591973 -125679471 + AluSp/q SINE Alu 156 297 -16 1192 152 8 99 chr9 16592247 16592462 -125678982 + MER2 DNA MER2_type 1 189 -156 2127 130 3 0 chr9 16592462 16592761 -125678683 - AluSx SINE Alu -12 300 1 1192 152 8 99 chr9 16592761 16592808 -125678636 + MER2 DNA MER2_type 189 239 -106 4533 158 127 58 chr9 16592844 16593977 -125677467 - pTR5 LTR ERV1 0 2438 1352 2046 91 4 14 chr9 16593987 16594263 -125677181 + AluSp SINE Alu 31 303 -10 846 115 96 46 chr9 16594266 16594286 -125677158 - MER106B DNA MER1_type -241 818 800 2325 96 0 0 chr9 16594286 16594578 -125676866 + AluSx SINE Alu 1 292 -20 846 115 96 46 chr9 16594578 16594775 -125676669 - MER106B DNA MER1_type -259 800 590 1264 145 28 33 chr9 16594779 16594993 -125676451 - AluJo SINE Alu -14 298 86 2154 205 47 34 chr9 16595010 16595034 -125676410 - MER106B DNA MER1_type -491 568 546 2324 86 3 10 chr9 16595034 16595335 -125676109 - AluSq SINE Alu -14 299 1 2154 205 47 34 chr9 16595335 16595837 -125675607 - MER106B DNA MER1_type -513 546 35 282 238 57 57 chr9 16596081 16596203 -125675241 - MIR3 SINE MIR -5 203 82 344 237 21 21 chr9 16596207 16596304 -125675140 + L2 LINE L2 3212 3308 -5 181 224 163 0 chr9 16596854 16596903 -125674541 + L2 LINE L2 3215 3271 -1 260 158 0 18 chr9 16596967 16597024 -125674420 - L2 LINE L2 -1 3312 3257 351 284 103 9 chr9 16597129 16597245 -125674199 - MER94 DNA DNA 0 134 8 21 36 0 0 chr9 16598333 16598361 -125673083 + GC_rich Low_complexity Low_complexity 1 28 0 521 241 9 0 chr9 16599287 16599399 -125672045 + L2 LINE L2 3197 3309 -4 820 224 141 4 chr9 16599482 16599723 -125671721 - L1ME1 LINE L1 -12 6154 5881 753 260 56 20 chr9 16599764 16600014 -125671430 - MIR SINE MIR -3 259 1 496 185 34 8 chr9 16600206 16600325 -125671119 + L1MB7 LINE L1 6063 6184 0 653 180 16 33 chr9 16600339 16600461 -125670983 + FLAM_C SINE Alu 1 120 -13 621 129 0 0 chr9 16600470 16600563 -125670881 - AluSp/q SINE Alu -19 294 202 1759 145 0 21 chr9 16600634 16600923 -125670521 + AluSg SINE Alu 3 285 -25 23 33 0 0 chr9 16600923 16600953 -125670491 + AT_rich Low_complexity Low_complexity 1 30 0 371 237 137 108 chr9 16602003 16602281 -125669163 + L2 LINE L2 3028 3313 0 419 202 10 0 chr9 16602678 16602782 -125668662 + (TA)n Simple_repeat Simple_repeat 1 105 0 580 192 31 31 chr9 16602951 16603081 -125668363 + FLAM_A SINE Alu 3 132 -1 279 160 40 0 chr9 16603081 16603156 -125668288 + GA-rich Low_complexity Low_complexity 1 78 0 411 155 0 28 chr9 16603263 16603334 -125668110 + MLT1J LTR MaLR 100 168 -343 8074 111 15 11 chr9 16603401 16603939 -125667505 + Tigger1 DNA MER2_type 616 1150 -1268 2375 97 0 0 chr9 16603939 16604237 -125667207 + AluSc SINE Alu 1 298 -11 8074 111 15 11 chr9 16604237 16604877 -125666567 + Tigger1 DNA MER2_type 1150 1799 -619 1392 209 17 35 chr9 16604886 16605165 -125666279 - AluJo SINE Alu 0 332 57 1967 139 31 50 chr9 16605165 16605547 -125665897 - THE1C LTR MaLR 0 375 1 1392 209 17 35 chr9 16605547 16605604 -125665840 - AluJo SINE Alu -275 57 1 3507 171 11 11 chr9 16605605 16605849 -125665595 + Tigger1 DNA MER2_type 1798 2041 -377 2285 99 0 23 chr9 16605849 16606153 -125665291 + AluSq SINE Alu 3 299 -14 3507 171 11 11 chr9 16606153 16606528 -125664916 + Tigger1 DNA MER2_type 2040 2417 -1 1080 166 0 11 chr9 16606909 16607090 -125664354 + FRAM SINE Alu 1 175 -1 2564 52 0 16 chr9 16607152 16607458 -125663986 + AluY SINE Alu 2 302 -9 273 136 7 0 chr9 16607510 16607568 -125663876 - L1MC4 LINE L1 0 8042 7936 913 116 22 0 chr9 16607577 16607715 -125663729 + L1MA3 LINE L1 6165 6305 0 2433 47 0 10 chr9 16607741 16608038 -125663406 + AluY SINE Alu 1 294 -17 1673 247 89 41 chr9 16608175 16608863 -125662581 - L1MC4 LINE L1 -141 7901 7181 333 0 0 0 chr9 16609095 16609132 -125662312 + (TA)n Simple_repeat Simple_repeat 2 38 0 942 137 0 20 chr9 16609153 16609299 -125662145 + AluSg/x SINE Alu 154 296 -16 816 304 27 14 chr9 16609422 16609787 -125661657 + L1MC4a LINE L1 3879 4248 -1898 561 133 153 0 chr9 16610068 16610166 -125661278 - MER39B LTR ERV1 -2 651 539 749 90 0 0 chr9 16610171 16610271 -125661173 + AluY SINE Alu 197 296 -15 3100 99 24 79 chr9 16611125 16611658 -125659786 - MER39B LTR ERV1 -149 504 1 1213 296 125 8 chr9 16611661 16612277 -125659167 + L1MC4a LINE L1 5488 6175 -1633 899 89 0 0 chr9 16612288 16612400 -125659044 + AluSg SINE Alu 1 112 -198 3908 86 2 6 chr9 16612400 16612913 -125658531 + MER9 LTR ERVK 1 511 0 1535 92 15 0 chr9 16612913 16613108 -125658336 + AluSg SINE Alu 107 304 -6 301 250 67 10 chr9 16613371 16613475 -125657969 + L1M4 LINE L1 4729 4838 -1308 895 226 31 44 chr9 16613561 16613787 -125657657 + MER87 LTR ERV1 1 223 -318 1352 183 0 56 chr9 16613826 16614094 -125657350 + AluJo SINE Alu 11 263 -49 826 153 15 0 chr9 16614130 16614261 -125657183 + FRAM SINE Alu 32 164 -12 846 192 28 11 chr9 16615231 16615408 -125656036 + FRAM SINE Alu 1 176 0 189 107 0 0 chr9 16615804 16615832 -125655612 + (T)n Simple_repeat Simple_repeat 1 28 0 2912 121 17 46 chr9 16615855 16616199 -125655245 - MER4E LTR ERV1 0 766 414 2117 92 50 0 chr9 16616199 16616481 -125654963 + AluSp SINE Alu 1 296 -17 2912 121 17 46 chr9 16616481 16616712 -125654732 - MER4E LTR ERV1 -352 414 28 511 126 0 32 chr9 16616731 16616826 -125654618 - L1PA13 LINE L1 -14 6149 6058 4964 115 23 16 chr9 16617136 16617885 -125653559 + MER4E LTR ERV1 1 754 -25 2230 117 0 0 chr9 16617989 16618287 -125653157 + AluSx SINE Alu 1 298 -14 1613 183 64 117 chr9 16618287 16618576 -125652868 - LTR8 LTR ERV1 -174 517 214 2216 101 3 0 chr9 16618576 16618873 -125652571 - AluSg SINE Alu -12 298 1 1613 183 64 117 chr9 16618873 16618913 -125652531 - LTR8 LTR ERV1 -477 214 173 2415 146 72 66 chr9 16618913 16619400 -125652044 - LTR2B LTR ERV1 0 490 1 1613 183 64 117 chr9 16619400 16619615 -125651829 - LTR8 LTR ERV1 -518 173 1 233 287 64 0 chr9 16619615 16619709 -125651735 + L2 LINE L2 2310 2409 -905 701 211 7 0 chr9 16620059 16620206 -125651238 + L1PB4 LINE L1 6002 6149 -7 2437 46 0 7 chr9 16620485 16620799 -125650645 + AluY SINE Alu 1 312 0 351 320 49 0 chr9 16621319 16621441 -125650003 + L2 LINE L2 3182 3309 -4 2228 102 0 0 chr9 16621468 16621790 -125649654 - AluSq SINE Alu 0 322 1 423 325 33 7 chr9 16622122 16622273 -125649171 + MER5B DNA MER1_type 12 166 -12 210 352 0 0 chr9 16622688 16622759 -125648685 - MIR SINE MIR -47 215 145 2324 106 3 0 chr9 16622778 16623080 -125648364 + AluSq SINE Alu 1 303 -10 445 241 38 15 chr9 16623101 16623234 -125648210 + MIR SINE MIR 119 254 -8 284 247 11 65 chr9 16623246 16623339 -125648105 - MIR3 SINE MIR -109 99 12 1037 172 0 0 chr9 16623379 16623542 -125647902 + FAM SINE Alu 1 163 -12 326 311 44 30 chr9 16623685 16623820 -125647624 + MIR SINE MIR 22 158 -104 2241 109 3 0 chr9 16623872 16624166 -125647278 + AluSx SINE Alu 1 295 -17 1149 101 0 0 chr9 16624301 16624470 -125646974 - AluSg/x SINE Alu 0 300 132 1822 202 74 40 chr9 16624473 16624919 -125646525 - MLT2B1 LTR ERVL -59 461 1 2606 221 118 20 chr9 16624920 16625672 -125645772 - L1MEc LINE L1 -5549 847 22 1092 199 118 103 chr9 16625682 16626131 -125645313 + MER34C LTR ERV1 35 495 -90 1741 167 33 3 chr9 16626131 16626431 -125645013 - AluJb SINE Alu -3 309 1 1092 199 118 103 chr9 16626431 16626524 -125644920 + MER34C LTR ERV1 495 585 0 2200 123 3 3 chr9 16626658 16626967 -125644477 - AluSx SINE Alu -1 311 3 317 43 21 0 chr9 16627166 16627213 -125644231 + (TG)n Simple_repeat Simple_repeat 2 49 0 2395 73 13 0 chr9 16627379 16627679 -125643765 - AluSp SINE Alu -9 304 1 1969 184 40 153 chr9 16627852 16628635 -125642809 - LTR8A LTR ERV1 0 727 34 659 159 18 0 chr9 16628647 16628760 -125642684 + FLAM_A SINE Alu 28 142 0 253 193 18 0 chr9 16628760 16628817 -125642627 - HAL1b LINE L1 -46 1302 1245 1567 162 50 46 chr9 16629029 16629083 -125642361 + MSTB LTR MaLR 3 55 -371 1994 116 0 44 chr9 16629083 16629402 -125642042 + AluSp SINE Alu 1 305 -8 1567 162 50 46 chr9 16629402 16629650 -125641794 + MSTB LTR MaLR 55 306 -120 690 164 0 0 chr9 16629750 16629854 -125641590 - MER1B DNA MER1_type -193 104 1 * 884 187 56 14 chr9 16629854 16630063 -125641381 + LTR37B LTR ERV1 250 467 -1 230 157 0 57 chr9 16631595 16631665 -125639779 + CT-rich Low_complexity Low_complexity 1 66 0 2325 97 3 0 chr9 16633186 16633484 -125637960 - AluSp SINE Alu -14 299 1 213 299 140 0 chr9 16634507 16634614 -125636830 + MIR SINE MIR 122 243 -19 243 308 216 34 chr9 16634806 16635014 -125636430 + MIR SINE MIR 4 249 -13 2151 89 18 0 chr9 16635290 16635572 -125635872 + AluSp SINE Alu 1 287 -26 260 314 0 23 chr9 16635749 16635835 -125635609 + MIR3 SINE MIR 84 167 -41 22 35 0 0 chr9 16636772 16636801 -125634643 + AT_rich Low_complexity Low_complexity 1 29 0 538 236 61 24 chr9 16636986 16637151 -125634293 - MIR SINE MIR 0 262 92 316 301 62 14 chr9 16637137 16637283 -125634161 + MIR SINE MIR 97 249 -13 * 405 299 37 0 chr9 16637588 16637695 -125633749 + MIR SINE MIR 18 128 -134 734 198 21 109 chr9 16637955 16638027 -125633417 + MER58A DNA MER1_type 3 80 -2340 2347 108 0 6 chr9 16638027 16638341 -125633103 - AluSx SINE Alu 0 312 1 734 198 21 109 chr9 16638341 16638506 -125632938 + MER58A DNA MER1_type 80 219 -5 186 171 0 0 chr9 16639144 16639185 -125632259 + T-rich Low_complexity Low_complexity 1 41 0 183 42 0 0 chr9 16639322 16639346 -125632098 + (CAA)n Simple_repeat Simple_repeat 2 25 0 450 277 101 0 chr9 16639352 16639511 -125631933 + MIR SINE MIR 82 256 -6 225 0 0 0 chr9 16639769 16639794 -125631650 + (A)n Simple_repeat Simple_repeat 1 25 0 1908 150 3 7 chr9 16639822 16640115 -125631329 - AluSx SINE Alu -14 298 7 848 223 38 46 chr9 16640752 16640990 -125630454 - MIR SINE MIR 0 262 27 195 346 65 19 chr9 16641498 16641605 -125629839 - MIR SINE MIR -10 252 141 511 290 204 35 chr9 16641788 16642333 -125629111 + L1MC/D LINE L1 4758 5394 -752 307 322 155 20 chr9 16642345 16642649 -125628795 + L1MC/D LINE L1 5439 5783 -2025 25 83 0 0 chr9 16642948 16643008 -125628436 + AT_rich Low_complexity Low_complexity 1 60 0 1998 137 0 0 chr9 16643121 16643405 -125628039 + AluSg SINE Alu 2 285 -25 23 33 0 0 chr9 16643405 16643435 -125628009 + AT_rich Low_complexity Low_complexity 1 30 0 442 255 126 97 chr9 16644485 16644763 -125626681 + L2 LINE L2 3028 3313 0 258 85 0 0 chr9 16645159 16645206 -125626238 - LTR66 LTR ERVL -170 440 394 224 212 15 0 chr9 16645214 16645280 -125626164 + (TA)n Simple_repeat Simple_repeat 2 68 0 627 192 31 31 chr9 16645449 16645579 -125625865 + FLAM_A SINE Alu 3 132 -1 279 160 40 0 chr9 16645579 16645654 -125625790 + GA-rich Low_complexity Low_complexity 1 78 0 418 155 0 28 chr9 16645761 16645832 -125625612 + MLT1J LTR MaLR 100 168 -343 8133 113 14 10 chr9 16645899 16646437 -125625007 + Tigger1 DNA MER2_type 616 1150 -1268 2367 97 0 0 chr9 16646437 16646736 -125624708 + AluSc SINE Alu 1 299 -10 8133 113 14 10 chr9 16646736 16647384 -125624060 + Tigger1 DNA MER2_type 1150 1807 -611 1351 213 17 35 chr9 16647385 16647664 -125623780 - AluJo SINE Alu 0 332 57 2094 141 34 52 chr9 16647664 16648046 -125623398 - THE1C LTR MaLR 0 375 1 1351 213 17 35 chr9 16648046 16648103 -125623341 - AluJo SINE Alu -275 57 1 3539 173 11 11 chr9 16648104 16648348 -125623096 + Tigger1 DNA MER2_type 1798 2041 -377 2273 99 0 23 chr9 16648348 16648652 -125622792 + AluSq SINE Alu 3 299 -14 3539 173 11 11 chr9 16648652 16649027 -125622417 + Tigger1 DNA MER2_type 2040 2417 -1 1071 166 0 11 chr9 16649408 16649589 -125621855 + FRAM SINE Alu 1 175 -1 2502 56 0 16 chr9 16649651 16649956 -125621488 + AluY SINE Alu 2 301 -10 407 245 108 0 chr9 16649956 16650058 -125621386 - MER5A DNA MER1_type 0 189 77 224 196 84 103 chr9 16649980 16650061 -125621383 + MER5A DNA MER1_type 45 125 -64 * 204 40 0 0 chr9 16650061 16650086 -125621358 + (CTG)n Simple_repeat Simple_repeat 2 26 0 224 196 84 103 chr9 16650086 16650111 -125621333 + MER5A DNA MER1_type 125 149 -40 1988 185 30 22 chr9 16650230 16650592 -125620852 + MLT1A1 LTR MaLR 1 365 0 1690 81 31 0 chr9 16650673 16650896 -125620548 - LTR8 LTR ERV1 -356 335 106 308 119 0 0 chr9 16650898 16650940 -125620504 - Alu SINE Alu -258 44 3 1804 147 3 20 chr9 16651426 16651656 -125619788 - AluJo SINE Alu -12 300 75 5257 82 14 54 chr9 16651656 16652376 -125619068 - LTR8 LTR ERV1 0 691 1 1804 147 3 20 chr9 16652376 16652438 -125619006 - AluJo SINE Alu -237 75 13 1918 112 56 0 chr9 16652469 16652763 -125618681 - AluSx SINE Alu 0 311 3 2360 83 7 0 chr9 16652823 16653123 -125618321 - AluSp SINE Alu -11 302 1 276 227 91 11 chr9 16653344 16653432 -125618012 - MIR SINE MIR -82 180 86 1681 168 3 48 chr9 16653511 16653680 -125617764 - AluJo SINE Alu -9 303 153 2197 122 0 3 chr9 16653680 16653983 -125617461 - AluSg SINE Alu -8 302 1 1681 168 3 48 chr9 16653983 16654128 -125617316 - AluJo SINE Alu -159 153 3 207 0 0 0 chr9 16654136 16654159 -125617285 + (T)n Simple_repeat Simple_repeat 1 23 0 2220 113 7 0 chr9 16654290 16654590 -125616854 - AluSp SINE Alu -11 302 1 1157 213 38 33 chr9 16654800 16655123 -125616321 + L1MB5 LINE L1 3020 3347 -2799 2332 76 0 23 chr9 16655123 16655424 -125616020 + AluY SINE Alu 1 294 -17 1157 213 38 33 chr9 16655424 16655467 -125615977 + L1MB5 LINE L1 3347 3388 -2758 1377 169 0 4 chr9 16655476 16655718 -125615726 + L1MB5 LINE L1 4447 4687 -1459 2493 105 11 29 chr9 16655719 16655879 -125615565 + THE1C LTR MaLR 1 162 -213 1872 117 0 120 chr9 16655879 16656213 -125615231 - AluSg SINE Alu -5 295 2 2493 105 11 29 chr9 16656213 16656434 -125615010 + THE1C LTR MaLR 162 375 0 11281 112 37 5 chr9 16656434 16657965 -125613479 + THE1C-int LTR MaLR 1 1580 0 2645 106 21 24 chr9 16657965 16658341 -125613103 + THE1C LTR MaLR 1 375 0 2246 202 22 27 chr9 16658341 16658809 -125612635 + L1MB5 LINE L1 4684 5150 -996 1524 175 42 52 chr9 16658809 16658951 -125612493 + AluJo SINE Alu 3 145 -167 2249 110 0 7 chr9 16658951 16659250 -125612194 + AluY SINE Alu 1 297 -14 1524 175 42 52 chr9 16659250 16659415 -125612029 + AluJo SINE Alu 145 307 -5 2246 202 22 27 chr9 16659415 16659500 -125611944 + L1MB5 LINE L1 5150 5234 -912 718 221 0 7 chr9 16659504 16659640 -125611804 + FLAM_A SINE Alu 6 140 -2 560 220 58 23 chr9 16659647 16659820 -125611624 + L1MB5 LINE L1 5221 5399 -747 * 1919 133 10 17 chr9 16659802 16660103 -125611341 + L1PA15 LINE L1 5811 6109 -56 2279 122 8 62 chr9 16660103 16660172 -125611272 - THE1B LTR MaLR 0 364 293 8318 13 6 0 chr9 16660172 16661228 -125610216 + L1PA2 LINE L1 5095 6155 0 2279 122 8 62 chr9 16661228 16661543 -125609901 - THE1B LTR MaLR -71 293 1 3490 61 2 37 chr9 16661543 16661727 -125609717 - THE1B-int LTR MaLR 0 1580 1391 2218 116 3 0 chr9 16661727 16662028 -125609416 + AluSp SINE Alu 5 306 -7 3490 61 2 37 chr9 16662028 16662303 -125609141 - THE1B-int LTR MaLR -189 1391 1137 4029 154 42 27 chr9 16662340 16663118 -125608326 + L1MB5 LINE L1 5385 6174 0 2296 84 3 0 chr9 16663234 16663532 -125607912 + AluSp SINE Alu 1 299 -14 637 243 6 18 chr9 16663715 16663884 -125607560 - L2 LINE L2 -34 3279 3113 391 222 21 69 chr9 16663916 16664007 -125607437 + L1ME LINE L1 10 94 -5976 2244 49 3 14 chr9 16664007 16664328 -125607116 + AluY SINE Alu 1 318 0 391 222 21 69 chr9 16664328 16664379 -125607065 + L1ME LINE L1 94 146 -5924 718 241 45 78 chr9 16664412 16664744 -125606700 + L1ME LINE L1 266 586 -5484 645 189 116 79 chr9 16664887 16665077 -125606367 - MER34B LTR ERV1 -358 207 11 1587 179 29 4 chr9 16665207 16665505 -125605939 - AluJo SINE Alu 0 305 1 625 264 97 31 chr9 16665526 16665722 -125605722 + L1MC4a LINE L1 5556 5774 -2034 1878 167 3 7 chr9 16665722 16666022 -125605422 + AluJb SINE Alu 1 299 -13 625 264 97 31 chr9 16666022 16666083 -125605361 + L1MC4a LINE L1 5774 5830 -1978 2085 108 0 29 chr9 16666083 16666397 -125605047 + AluSx SINE Alu 2 306 -6 685 278 85 14 chr9 16666481 16666693 -125604751 + MLT1J LTR MaLR 13 239 -272 381 244 74 30 chr9 16666789 16666924 -125604520 + MLT1J LTR MaLR 371 511 0 244 284 80 0 chr9 16666927 16667015 -125604429 - L1ME LINE L1 -507 5614 5520 211 338 81 0 chr9 16667493 16667567 -125603877 - L2 LINE L2 -173 3099 3020 2069 82 0 11 chr9 16667980 16668250 -125603194 + AluSx SINE Alu 39 305 -7 238 328 63 16 chr9 16668411 16668600 -125602844 + L2 LINE L2 2142 2339 -975 278 303 206 12 chr9 16668869 16669034 -125602410 + MIR SINE MIR 56 252 -10 2278 114 0 3 chr9 16669058 16669366 -125602078 - AluSg SINE Alu -3 307 1 310 205 168 0 chr9 16669477 16669562 -125601882 + MLT1I LTR MaLR 40 166 -299 782 316 35 52 chr9 16669941 16670422 -125601022 - MLT1K LTR MaLR -3 473 1 225 114 0 0 chr9 16670658 16670693 -125600751 - HSMAR1 DNA Mariner 0 1287 1253 1650 160 0 35 chr9 16670728 16671016 -125600428 + AluJb SINE Alu 1 278 -34 189 214 0 0 chr9 16671018 16671060 -125600384 + GA-rich Low_complexity Low_complexity 3 44 0 225 269 51 26 chr9 16671599 16671677 -125599767 + L2 LINE L2 3146 3225 -47 3580 208 63 98 chr9 16672232 16673107 -125598337 - L1MD2 LINE L1 -412 5947 5042 2032 118 11 0 chr9 16673107 16673414 -125598030 - AluSx SINE Alu 0 310 1 3580 208 63 98 chr9 16673414 16674134 -125597310 - L1MD2 LINE L1 -1317 5042 4298 2135 99 3 10 chr9 16674134 16674438 -125597006 - AluY SINE Alu -9 302 1 3580 208 63 98 chr9 16674438 16674615 -125596829 - L1MD2 LINE L1 -2061 4298 4274 2349 80 3 6 chr9 16674615 16674926 -125596518 - AluY SINE Alu -1 310 1 3580 208 63 98 chr9 16674926 16675175 -125596269 - L1MD2 LINE L1 -2085 4274 4018 782 188 182 11 chr9 16675176 16675357 -125596087 - AluSc SINE Alu -11 298 87 991 210 42 38 chr9 16675360 16675622 -125595822 - L1MD2 LINE L1 -2121 4025 3763 198 0 0 0 chr9 16675670 16675692 -125595752 + (TCTCCC)n Simple_repeat Simple_repeat 1 22 0 528 329 116 18 chr9 16675700 16676089 -125595355 + L2 LINE L2 2550 2976 -338 247 262 8 57 chr9 16676208 16676330 -125595114 + L2 LINE L2 3122 3237 -76 1814 165 29 0 chr9 16676463 16676735 -125594709 + AluJo SINE Alu 1 280 -32 1891 131 7 24 chr9 16676836 16677126 -125594318 - THE1B LTR MaLR -79 285 1 3444 65 2 37 chr9 16677126 16677310 -125594134 - THE1B-int LTR MaLR 0 1580 1391 2218 116 3 0 chr9 16677310 16677611 -125593833 + AluSp SINE Alu 5 306 -7 3444 65 2 37 chr9 16677611 16677886 -125593558 - THE1B-int LTR MaLR -189 1391 1137 4033 154 42 27 chr9 16677923 16678701 -125592743 + L1MB5 LINE L1 5385 6174 0 2270 87 3 0 chr9 16678816 16679114 -125592330 + AluSp SINE Alu 1 299 -14 609 249 6 18 chr9 16679297 16679466 -125591978 - L2 LINE L2 -34 3279 3113 397 224 21 63 chr9 16679498 16679588 -125591856 + L1ME LINE L1 10 94 -5976 2270 46 3 14 chr9 16679588 16679909 -125591535 + AluY SINE Alu 1 318 0 397 224 21 63 chr9 16679909 16679960 -125591484 + L1ME LINE L1 94 146 -5924 684 253 47 64 chr9 16679993 16680290 -125591154 + L1ME LINE L1 266 557 -5513 645 189 116 79 chr9 16680468 16680658 -125590786 - MER34B LTR ERV1 -358 207 11 697 257 109 84 chr9 16680710 16680783 -125590661 + L1MC4a LINE L1 5449 5519 -2289 247 32 0 0 chr9 16680783 16680814 -125590630 + (TTG)n Simple_repeat Simple_repeat 1 180 0 1604 179 29 4 chr9 16680814 16681088 -125590356 - AluJo SINE Alu -31 281 1 697 257 109 84 chr9 16681088 16681305 -125590139 + L1MC4a LINE L1 5519 5729 -2079 1894 167 3 7 chr9 16681305 16681605 -125589839 + AluJb SINE Alu 1 299 -13 697 257 109 84 chr9 16681605 16681666 -125589778 + L1MC4a LINE L1 5729 5787 -2021 2106 108 0 29 chr9 16681666 16681981 -125589463 + AluSx SINE Alu 2 307 -5 697 257 109 84 chr9 16681981 16682065 -125589379 + L1MC4a LINE L1 5787 5898 -1910 679 278 85 14 chr9 16682065 16682277 -125589167 + MLT1J LTR MaLR 13 239 -272 375 244 74 30 chr9 16682373 16682508 -125588936 + MLT1J LTR MaLR 371 511 0 903 298 20 0 chr9 16682549 16682841 -125588603 - L1MC4a LINE L1 -1919 5889 5592 306 0 0 0 chr9 16682845 16682879 -125588565 + (TG)n Simple_repeat Simple_repeat 2 35 0 291 365 44 7 chr9 16683041 16683178 -125588266 + L2 LINE L2 3109 3250 -22 208 229 21 0 chr9 16683178 16683226 -125588218 + (TGGA)n Simple_repeat Simple_repeat 1 49 0 2212 120 0 0 chr9 16684410 16684709 -125586735 - AluSx SINE Alu -13 299 1 383 119 0 15 chr9 16684719 16684786 -125586658 - L1MA10 LINE L1 -13 6321 6256 1999 67 7 19 chr9 16684944 16685214 -125586230 - AluY SINE Alu 0 311 45 2134 235 82 50 chr9 16686009 16686918 -125584526 + L1MC4 LINE L1 6963 7901 -141 2474 48 0 3 chr9 16687055 16687350 -125584094 - AluY SINE Alu -17 294 1 913 116 22 0 chr9 16687377 16687515 -125583929 - L1MA3 LINE L1 0 6305 6165 273 136 7 0 chr9 16687524 16687582 -125583862 + L1MC4 LINE L1 7936 8042 0 2431 63 3 3 chr9 16687634 16687936 -125583508 - AluY SINE Alu -9 302 1 634 248 0 0 chr9 16687943 16688072 -125583372 - MLT1A2 LTR MaLR -213 161 33 26 0 0 0 chr9 16688242 16688268 -125583176 + AT_rich Low_complexity Low_complexity 1 26 0 3329 172 14 14 chr9 16688504 16689127 -125582317 - L1MC3 LINE L1 -9 7776 7154 2433 95 0 0 chr9 16689562 16689868 -125581576 + AluSq SINE Alu 1 306 -7 516 62 0 49 chr9 16689903 16689984 -125581460 - L1PA8 LINE L1 -1 6171 6095 2771 66 3 0 chr9 16689990 16690339 -125581105 + L1PA8 LINE L1 5746 6095 -77 501 162 121 10 chr9 16690470 16690569 -125580875 - MER2 DNA MER2_type -1 344 235 2264 108 0 16 chr9 16690574 16690890 -125580554 - AluSq SINE Alu -2 311 1 810 183 0 107 chr9 16690916 16691113 -125580331 + AluJb SINE Alu 137 312 0 402 270 20 40 chr9 16691381 16691529 -125579915 - MIR3 SINE MIR -18 190 46 2765 184 6 24 chr9 16691959 16692443 -125579001 + MLT2B3 LTR ERVL 1 475 -79 2492 132 6 3 chr9 16692443 16692806 -125578638 - THE1B LTR MaLR 0 364 1 409 139 76 0 chr9 16692806 16692882 -125578562 + MLT2B2 LTR ERVL 421 502 -13 407 230 97 118 chr9 16692930 16693269 -125578175 + L2 LINE L2 2904 3235 -37 2353 92 3 19 chr9 16694697 16695013 -125576431 + AluSq SINE Alu 1 311 -2 385 245 53 0 chr9 16695291 16695385 -125576059 - MER94 DNA DNA -35 99 1 240 322 70 0 chr9 16695445 16695560 -125575884 + L2 LINE L2 3150 3272 0 2169 129 0 3 chr9 16695567 16695878 -125575566 + AluSx SINE Alu 1 310 -2 263 139 0 89 chr9 16696050 16696129 -125575315 - MER106B DNA MER1_type -154 905 834 2144 119 0 10 chr9 16696135 16696429 -125575015 + AluSx SINE Alu 1 291 -21 508 70 0 12 chr9 16696429 16696655 -125574789 + AluSg SINE Alu 1 301 -9 697 84 11 0 chr9 16696655 16696750 -125574694 + AluS SINE Alu 1 96 -217 755 98 9 0 chr9 16696856 16696968 -125574476 + L1PBa LINE L1 2788 2900 -3963 2004 107 0 0 chr9 16696970 16697222 -125574222 + AluSc SINE Alu 1 252 -57 1810 133 0 4 chr9 16697223 16697471 -125573973 + AluSq SINE Alu 1 247 -66 1393 165 84 130 chr9 16697970 16698456 -125572988 + MER4C LTR ERV1 1 464 -1 331 221 66 49 chr9 16698667 16698789 -125572655 + L1ME4a LINE L1 5972 6095 -26 1643 77 0 0 chr9 16699090 16699284 -125572160 + AluSc SINE Alu 13 206 -103 1781 166 118 46 chr9 16699297 16699437 -125572007 - LTR10A LTR ERV1 -61 548 419 2505 66 0 3 chr9 16699437 16699739 -125571705 - AluY SINE Alu -10 301 1 1781 166 118 46 chr9 16699739 16700064 -125571380 - LTR10A LTR ERV1 -190 419 2 468 149 0 0 chr9 16700064 16700138 -125571306 + AluSg/x SINE Alu 202 275 -35 1225 181 104 102 chr9 16700147 16700588 -125570856 - LTR7 LTR ERV1 -8 442 1 196 67 0 67 chr9 16700598 16700643 -125570801 + (TAAAAA)n Simple_repeat Simple_repeat 2 43 0 312 203 114 0 chr9 16700920 16700999 -125570445 + MIR SINE MIR 105 192 -70 2410 95 0 3 chr9 16701312 16701617 -125569827 - AluSx SINE Alu -8 304 1 368 156 0 16 chr9 16701927 16701991 -125569453 - MER116 DNA Mariner -11 69 7 263 100 0 0 chr9 16701999 16702039 -125569405 - MIR SINE MIR -106 156 117 769 190 91 11 chr9 16702289 16702516 -125568928 + AluJo SINE Alu 5 296 -16 238 256 0 77 chr9 16702875 16702906 -125568538 - L2 LINE L2 -1 3271 3239 1923 161 125 10 chr9 16702906 16703322 -125568122 + MLT2C2 LTR ERVL 1 464 0 238 256 0 77 chr9 16703322 16703368 -125568076 - L2 LINE L2 -33 3239 3200 1740 153 0 43 chr9 16703371 16703671 -125567773 + AluJo SINE Alu 1 287 -25 216 364 74 0 chr9 16704240 16704361 -125567083 - L2 LINE L2 -6 3266 3137 2351 99 0 3 chr9 16704723 16705026 -125566418 + AluSq SINE Alu 1 302 -11 380 312 84 14 chr9 16705037 16705252 -125566192 + L1ME LINE L1 5488 5717 -453 676 164 0 57 chr9 16705703 16705843 -125565601 + FLAM_C SINE Alu 11 142 -1 339 148 49 0 chr9 16705849 16705910 -125565534 + L1 LINE L1 2687 2750 -3396 458 184 29 52 chr9 16705916 16706052 -125565392 + L1M1 LINE L1 3296 3428 -4137 506 284 83 97 chr9 16706080 16706288 -125565156 - LTR67 LTR ERVL -19 538 328 1768 160 0 4 chr9 16706288 16706563 -125564881 + AluSx SINE Alu 35 308 -4 506 284 83 97 chr9 16706563 16706899 -125564545 - LTR67 LTR ERVL -229 328 2 183 42 0 0 chr9 16707011 16707035 -125564409 + (TGGGGG)n Simple_repeat Simple_repeat 1 24 0 2427 110 54 56 chr9 16707057 16707267 -125564177 + MSTA LTR MaLR 1 210 -218 1958 67 0 12 chr9 16707267 16707507 -125563937 + AluY SINE Alu 1 237 -74 2427 110 54 56 chr9 16707507 16707725 -125563719 + MSTA LTR MaLR 210 428 0 1408 211 3 45 chr9 16708646 16708710 -125562734 + AluJo SINE Alu 4 69 -243 2300 101 7 13 chr9 16708710 16709016 -125562428 + AluSg SINE Alu 1 304 -6 1408 211 3 45 chr9 16709016 16709264 -125562180 + AluJo SINE Alu 69 303 -9 1990 105 4 0 chr9 16710308 16710565 -125560879 + AluSx SINE Alu 35 292 -20 747 295 165 24 chr9 16711262 16711716 -125559728 - LTR33 LTR ERVL -3 518 1 219 36 0 0 chr9 16711823 16711851 -125559593 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 1963 144 14 0 chr9 16711851 16712136 -125559308 - AluJb SINE Alu -23 289 1 2325 110 0 0 chr9 16712371 16712681 -125558763 + AluSg SINE Alu 1 310 0 1541 161 89 18 chr9 16713044 16713324 -125558120 + AluJo SINE Alu 1 300 -12 204 182 0 0 chr9 16713856 16713900 -125557544 + CT-rich Low_complexity Low_complexity 2 45 0 992 205 162 34 chr9 16713982 16714013 -125557431 - L1ME1 LINE L1 -4 6162 6136 1725 98 87 34 chr9 16714013 16714302 -125557142 - AluSg SINE Alu 0 303 1 1752 146 7 26 chr9 16714305 16714607 -125556837 - AluJo SINE Alu -16 296 1 992 205 162 34 chr9 16714607 16714921 -125556523 - L1ME1 LINE L1 -31 6135 5767 2300 63 0 37 chr9 16714946 16715245 -125556199 + AluY SINE Alu 1 288 -23 399 237 0 0 chr9 16715245 16715254 -125556190 + (TA)n Simple_repeat Simple_repeat 2 10 -100 2927 3 0 0 chr9 16715254 16715561 -125555883 + AluYb8 SINE Alu 1 307 -11 399 237 0 0 chr9 16715561 16715660 -125555784 + (TA)n Simple_repeat Simple_repeat 9 110 0 1897 127 9 50 chr9 16715668 16715815 -125555629 + AluJo SINE Alu 1 152 -160 1757 133 37 20 chr9 16715815 16716109 -125555335 + AluSx SINE Alu 1 299 -13 1897 127 9 50 chr9 16716109 16716284 -125555160 + AluJo SINE Alu 152 310 -2 3989 232 93 28 chr9 16716284 16716666 -125554778 - L1ME1 LINE L1 -383 5781 5425 2334 101 0 13 chr9 16716666 16716972 -125554472 + AluSg SINE Alu 1 302 -8 3989 232 93 28 chr9 16716972 16717411 -125554033 - L1ME1 LINE L1 -739 5425 5016 2463 83 3 3 chr9 16717411 16717723 -125553721 + AluSp SINE Alu 1 312 -1 3989 232 93 28 chr9 16717723 16718579 -125552865 - L1ME1 LINE L1 -1148 5016 3981 1533 190 17 17 chr9 16718583 16718872 -125552572 + AluJb SINE Alu 3 291 -21 521 45 0 0 chr9 16718875 16718942 -125552502 + AluY SINE Alu 2 68 -242 384 297 61 47 chr9 16719151 16719363 -125552081 + L1ME LINE L1 5394 5608 -513 1027 248 51 0 chr9 16719363 16719617 -125551827 - MER110 LTR ERV1 0 491 225 1601 199 16 7 chr9 16719633 16719940 -125551504 - AluJb SINE Alu -2 310 1 2338 102 7 0 chr9 16719986 16720114 -125551330 + AluSc SINE Alu 1 127 -182 233 0 62 0 chr9 16720114 16720146 -125551298 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2338 102 7 0 chr9 16720146 16720321 -125551123 + AluSc SINE Alu 127 306 -3 632 186 107 79 chr9 16720600 16720777 -125550667 - MER63A DNA MER1_type -28 182 1 349 259 47 59 chr9 16720777 16720934 -125550510 - MLT1L LTR MaLR -22 593 439 327 197 16 0 chr9 16720951 16721012 -125550432 - MLT1J LTR MaLR -338 173 112 234 216 149 14 chr9 16721084 16721158 -125550286 - MLT1L LTR MaLR -530 85 2 22 56 0 0 chr9 16721193 16721229 -125550215 + AT_rich Low_complexity Low_complexity 1 36 0 721 186 0 16 chr9 16721229 16721358 -125550086 + FLAM_A SINE Alu 1 127 -6 1979 161 3 0 chr9 16721361 16721666 -125549778 - AluSp SINE Alu -7 306 1 1978 171 67 3 chr9 16721805 16722192 -125549252 - L1MC1 LINE L1 0 6333 5922 1009 152 0 0 chr9 16722192 16722343 -125549101 - Tigger1 DNA MER2_type 0 2418 2268 1757 179 0 3 chr9 16722350 16722635 -125548809 + AluJb SINE Alu 9 292 -20 944 192 0 0 chr9 16722636 16722803 -125548641 + AluJb SINE Alu 140 306 -6 1943 89 13 73 chr9 16722806 16722880 -125548564 - Tigger1 DNA MER2_type -518 1900 1823 792 122 0 0 chr9 16722880 16722987 -125548457 + U6 snRNA snRNA 1 107 0 6773 79 8 9 chr9 16722987 16724019 -125547425 + L1PA10 LINE L1 5133 6168 0 1943 89 13 73 chr9 16724019 16724256 -125547188 - Tigger1 DNA MER2_type -593 1825 1607 1458 175 7 42 chr9 16724264 16724549 -125546895 + AluJo SINE Alu 9 283 -29 1842 143 0 0 chr9 16724560 16724825 -125546619 - AluSx SINE Alu -5 307 43 1066 90 7 0 chr9 16724864 16725009 -125546435 - Tigger1 DNA MER2_type -808 1610 1465 24 0 0 0 chr9 16725012 16725036 -125546408 + AT_rich Low_complexity Low_complexity 1 24 0 2215 103 14 0 chr9 16725036 16725327 -125546117 - AluY SINE Alu -14 297 3 2332 101 3 0 chr9 16725331 16725627 -125545817 - AluSx SINE Alu -15 297 1 429 250 0 39 chr9 16725666 16725770 -125545674 - AluJo SINE Alu -92 220 121 1453 190 17 71 chr9 16725782 16726280 -125545164 + L1M4c LINE L1 1568 2143 -4241 305 221 70 0 chr9 16726282 16726368 -125545076 - Tigger5 DNA MER2_type -17 2306 2215 288 211 0 0 chr9 16726360 16726412 -125545032 - Tigger5 DNA MER2_type -2268 55 4 * 2181 123 3 0 chr9 16726461 16726754 -125544690 + AluSx SINE Alu 1 294 -18 611 204 18 0 chr9 16726787 16726900 -125544544 + FLAM_A SINE Alu 12 126 -16 278 266 28 9 chr9 16726914 16727023 -125544421 + L1M4c LINE L1 2615 2725 -3657 1377 211 0 4 chr9 16727023 16727289 -125544155 + AluJb SINE Alu 40 304 -8 3130 204 113 96 chr9 16727289 16728762 -125542682 + L1M4c LINE L1 2715 4212 -2170 2157 110 10 0 chr9 16728762 16729052 -125542392 + AluSx SINE Alu 1 293 -19 3441 203 61 27 chr9 16729052 16729170 -125542274 + L1M4c LINE L1 4599 4712 -1670 2423 89 0 3 chr9 16729170 16729474 -125541970 + AluSp SINE Alu 1 303 -10 3441 203 61 27 chr9 16729474 16730151 -125541293 + L1M4c LINE L1 4712 5430 -952 2227 133 0 0 chr9 16730151 16730459 -125540985 + AluSq SINE Alu 1 308 -5 3441 203 61 27 chr9 16730459 16730550 -125540894 + L1M4c LINE L1 5430 5516 -866 1206 104 12 0 chr9 16730550 16730713 -125540731 - AluSq SINE Alu -15 298 134 2317 100 0 0 chr9 16730713 16731004 -125540440 - AluSx SINE Alu -21 291 1 308 242 70 19 chr9 16731234 16731252 -125540192 - L1MA10 LINE L1 -1 6333 6316 1713 208 43 69 chr9 16731252 16731493 -125539951 - L1ME1 LINE L1 -9 6157 5911 2064 126 7 0 chr9 16731493 16731778 -125539666 + AluSx SINE Alu 1 287 -25 1713 208 43 69 chr9 16731778 16732042 -125539402 - L1ME1 LINE L1 -255 5911 5665 1970 141 0 52 chr9 16732044 16732231 -125539213 - AluSx SINE Alu -2 310 115 221 0 35 0 chr9 16732231 16732260 -125539184 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 1946 134 7 0 chr9 16732260 16732536 -125538908 - AluSg SINE Alu -30 280 3 1970 141 0 52 chr9 16732536 16732674 -125538770 - AluSx SINE Alu -195 117 1 1461 133 5 5 chr9 16732675 16732886 -125538558 + THE1B LTR MaLR 154 364 0 * 1886 176 9 3 chr9 16732886 16733203 -125538241 - MLT2C2 LTR ERVL -145 319 1 1427 212 24 17 chr9 16733207 16733500 -125537944 + AluJb SINE Alu 1 295 -17 428 119 179 0 chr9 16733525 16733609 -125537835 - L1ME1 LINE L1 -549 5617 5519 2849 140 76 23 chr9 16733709 16734224 -125537220 - MER34C LTR ERV1 0 585 44 314 193 18 0 chr9 16734601 16734658 -125536786 - MLT2B2 LTR ERVL -263 252 195 192 40 0 0 chr9 16735231 16735256 -125536188 + (TC)n Simple_repeat Simple_repeat 2 26 0 219 337 20 10 chr9 16735467 16735568 -125535876 + CT-rich Low_complexity Low_complexity 4 105 0 372 134 0 45 chr9 16735628 16735695 -125535749 + MER4D LTR ERV1 1 64 -808 * 708 110 46 0 chr9 16735692 16735801 -125535643 + MER4E LTR ERV1 653 766 0 5952 128 64 66 chr9 16735807 16736019 -125535425 + MER4E-int LTR ERV1 22 233 -6525 2222 82 3 10 chr9 16736019 16736310 -125535134 - AluY SINE Alu -22 289 1 5952 128 64 66 chr9 16736310 16737085 -125534359 + MER4E-int LTR ERV1 233 1008 -5750 767 186 0 0 chr9 16737085 16737209 -125534235 - FLAM_C SINE Alu -9 124 1 5952 128 64 66 chr9 16737209 16737349 -125534095 + MER4E-int LTR ERV1 1008 1147 -5611 342 0 0 0 chr9 16737349 16737387 -125534057 + (TG)n Simple_repeat Simple_repeat 2 39 0 1188 183 56 37 chr9 16737387 16737796 -125533648 + MER4E-int LTR ERV1 1161 1673 -4925 2042 128 3 7 chr9 16737815 16738112 -125533332 + AluSc SINE Alu 1 296 -13 10196 127 18 13 chr9 16738131 16739490 -125531954 + L1PBa LINE L1 1 1371 -5492 2288 119 0 0 chr9 16739490 16739792 -125531652 - AluSg SINE Alu -8 302 1 10196 127 18 13 chr9 16739792 16740012 -125531432 + L1PBa LINE L1 1371 1588 -5275 2996 89 49 2 chr9 16740038 16740485 -125530959 + L1PBa LINE L1 2076 2543 -4320 516 204 76 0 chr9 16740586 16740718 -125530726 - L1M4 LINE L1 -2161 3985 3844 925 201 23 11 chr9 16740718 16740892 -125530552 - AluJb SINE Alu -11 301 126 2985 215 52 45 chr9 16740894 16741494 -125529950 - L1M4 LINE L1 -2652 3494 2900 2236 93 7 3 chr9 16741494 16741784 -125529660 + AluSc SINE Alu 2 292 -17 2985 215 52 45 chr9 16741784 16741818 -125529626 - L1M4 LINE L1 -3246 2900 2868 243 0 0 0 chr9 16741818 16741845 -125529599 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1566 175 36 7 chr9 16741849 16742123 -125529321 - AluJo SINE Alu -30 282 1 2985 215 52 45 chr9 16742123 16742485 -125528959 - L1M4 LINE L1 -3280 2866 2485 282 286 157 11 chr9 16742629 16742814 -125528630 - L1MEc LINE L1 -6076 320 109 752 171 0 36 chr9 16742830 16742970 -125528474 - FLAM_C SINE Alu -8 135 1 1879 212 54 5 chr9 16743116 16743502 -125527942 + LTR57 LTR ERVL 7 411 0 331 343 93 23 chr9 16743538 16743754 -125527690 + MIR SINE MIR 26 256 -6 2517 80 0 3 chr9 16744342 16744654 -125526790 + AluY SINE Alu 1 311 0 253 258 289 16 chr9 16744908 16745036 -125526408 - MIR3 SINE MIR -21 187 25 749 163 14 0 chr9 16745236 16745377 -125526067 + L1MA10 LINE L1 6179 6321 -13 2149 128 0 0 chr9 16745387 16745684 -125525760 + AluSx SINE Alu 1 297 -15 208 229 21 0 chr9 16746869 16746917 -125524527 + (TCCA)n Simple_repeat Simple_repeat 1 49 0 282 360 48 8 chr9 16746917 16747042 -125524402 - L2 LINE L2 -22 3250 3121 252 0 0 0 chr9 16747216 16747244 -125524200 + (CA)n Simple_repeat Simple_repeat 2 29 0 915 294 20 0 chr9 16747248 16747540 -125523904 + L1MC4a LINE L1 5592 5889 -1919 6767 67 21 60 chr9 16747540 16749658 -125521786 + SVA Other Other 4 1386 0 2286 110 7 0 chr9 16749721 16750029 -125521415 + AluSg SINE Alu 1 310 0 2006 139 21 68 chr9 16750685 16750910 -125520534 - MLT1A1 LTR MaLR -2 363 162 1552 148 112 0 chr9 16750910 16751188 -125520256 - AluJo SINE Alu -3 309 1 2006 139 21 68 chr9 16751188 16751343 -125520101 - MLT1A1 LTR MaLR -203 162 1 2465 105 5 14 chr9 16751503 16751874 -125519570 - L1PB1 LINE L1 -1 6150 5783 570 83 68 0 chr9 16751881 16752014 -125519430 + (TA)n Simple_repeat Simple_repeat 1 142 0 3951 167 8 1 chr9 16752023 16753279 -125518165 - L1PB1 LINE L1 -360 5791 4526 2384 62 0 0 chr9 16753281 16753555 -125517889 - AluSg SINE Alu -36 274 1 7445 213 18 16 chr9 16753556 16754341 -125517103 - L1PB1 LINE L1 -2187 3959 3177 194 0 39 0 chr9 16754341 16754367 -125517077 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7445 213 18 16 chr9 16754367 16755199 -125516245 - L1PB1 LINE L1 -2969 3177 2335 2330 107 0 7 chr9 16755199 16755507 -125515937 + AluY SINE Alu 1 306 -5 7445 213 18 16 chr9 16755507 16755606 -125515838 - L1PB1 LINE L1 -3811 2335 2238 798 132 0 0 chr9 16755736 16755850 -125515594 - AluY SINE Alu -56 255 142 1320 125 0 0 chr9 16755850 16756026 -125515418 - AluSc SINE Alu -133 176 1 1014 164 73 32 chr9 16756030 16756250 -125515194 - AluJb SINE Alu 0 312 84 2479 81 13 0 chr9 16756277 16756584 -125514860 + AluSp SINE Alu 1 311 -2 26 0 0 0 chr9 16756973 16756999 -125514445 + AT_rich Low_complexity Low_complexity 1 26 0 2118 129 0 3 chr9 16756999 16757294 -125514150 - AluSx SINE Alu -18 294 1 325 193 0 0 chr9 16757307 16757364 -125514080 - FLAM_A SINE Alu 0 133 77 509 164 74 187 chr9 16757372 16757668 -125513776 + Charlie8 DNA MER1_type 59 1415 -1002 229 75 104 119 chr9 16758450 16758517 -125512927 - MLT1K LTR MaLR -1 587 522 378 79 175 0 chr9 16758535 16758598 -125512846 + MER34 LTR ERV1 1 74 -468 25 31 0 0 chr9 16758609 16758641 -125512803 + AT_rich Low_complexity Low_complexity 1 32 0 2376 70 0 0 chr9 16758641 16758925 -125512519 - AluSg SINE Alu -26 284 1 4124 98 52 8 chr9 16758927 16759536 -125511908 + LTR9B LTR ERV1 9 644 0 3249 126 2 4 chr9 16759536 16760009 -125511435 + MER34 LTR ERV1 71 542 0 331 252 28 37 chr9 16760209 16760316 -125511128 - MLT1K LTR MaLR -325 263 158 1519 144 5 5 chr9 16760419 16760641 -125510803 + AluJb SINE Alu 1 222 -90 1069 177 160 86 chr9 16760641 16760758 -125510686 - LTR7 LTR ERV1 0 450 343 2437 90 0 0 chr9 16760758 16761059 -125510385 - AluSg SINE Alu -9 301 1 1069 177 160 86 chr9 16761059 16761360 -125510084 - LTR7 LTR ERV1 -107 343 1 469 191 0 0 chr9 16761361 16761450 -125509994 + AluJb SINE Alu 219 307 -5 2373 102 0 6 chr9 16761456 16761771 -125509673 + AluSp SINE Alu 1 313 0 1182 186 103 7 chr9 16761797 16762088 -125509356 + L1MB8 LINE L1 5300 5618 -566 595 254 41 18 chr9 16762098 16762267 -125509177 + MER8 DNA MER2_type 7 179 -60 355 191 0 0 chr9 16762243 16762306 -125509138 + MER2 DNA MER2_type 283 345 0 * 868 136 212 0 chr9 16762309 16762493 -125508951 + L1MB8 LINE L1 5634 5856 -318 2099 212 132 18 chr9 16762494 16763145 -125508299 - MER50 LTR ERV1 0 734 10 1159 187 117 11 chr9 16763151 16763434 -125508010 + L1MB8 LINE L1 5854 6166 -12 23 54 0 0 chr9 16764089 16764126 -125507318 + GC_rich Low_complexity Low_complexity 1 37 0 317 303 59 38 chr9 16765368 16765655 -125505789 - L1MC4 LINE L1 -30 8012 7720 947 195 132 3 chr9 16765735 16766022 -125505422 - MER5C DNA MER1_type 0 324 1 186 43 0 0 chr9 16766529 16766552 -125504892 + (TTATG)n Simple_repeat Simple_repeat 2 24 0 1852 122 11 7 chr9 16766552 16766839 -125504605 - AluSx SINE Alu -24 288 1 249 319 148 23 chr9 16767065 16767179 -125504265 + L2 LINE L2 2699 2797 -517 1962 128 30 3 chr9 16767179 16767475 -125503969 - AluSp SINE Alu -9 304 1 249 319 148 23 chr9 16767475 16767576 -125503868 + L2 LINE L2 2797 2941 -373 299 299 90 15 chr9 16767734 16767868 -125503576 + L2 LINE L2 3169 3312 -1 23 0 0 0 chr9 16768337 16768360 -125503084 + AT_rich Low_complexity Low_complexity 1 23 0 213 39 0 0 chr9 16768658 16768684 -125502760 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1886 131 11 18 chr9 16768686 16768969 -125502475 - AluSx SINE Alu -31 281 1 1893 111 0 0 chr9 16769204 16769456 -125501988 + AluSx SINE Alu 54 305 -7 1457 47 0 0 chr9 16769683 16769852 -125501592 + AluY SINE Alu 134 302 -9 259 322 76 52 chr9 16770120 16770698 -125500746 + HAL1b LINE L1 54 645 -703 362 306 24 0 chr9 16771163 16771333 -125500111 + L1MC4a LINE L1 2232 2405 -3741 1601 201 7 3 chr9 16771471 16771774 -125499670 + AluJo SINE Alu 1 304 -8 249 175 41 41 chr9 16771774 16771871 -125499573 + L1MC4a LINE L1 3063 3159 -2987 818 219 61 117 chr9 16771872 16772214 -125499230 + L1MC4a LINE L1 5609 5931 -1877 1107 207 204 36 chr9 16772215 16772829 -125498615 + LTR41 LTR ERVL 1 766 -7 793 214 89 77 chr9 16772837 16773187 -125498257 + L1MC4a LINE L1 5936 6289 -1519 198 0 0 0 chr9 16773207 16773229 -125498215 + (T)n Simple_repeat Simple_repeat 1 22 0 426 194 0 0 chr9 16773229 16773301 -125498143 - U6 snRNA snRNA -9 98 27 4451 220 64 59 chr9 16773374 16774790 -125496654 + L1MC4a LINE L1 6387 7808 0 4509 153 58 14 chr9 16775449 16775731 -125495713 - L1MB4 LINE L1 -2 6414 6146 2220 112 7 0 chr9 16775731 16776027 -125495417 - AluSx SINE Alu -14 298 1 4509 153 58 14 chr9 16776027 16776612 -125494832 - L1MB4 LINE L1 -270 6146 5509 2254 110 0 0 chr9 16776612 16776903 -125494541 + AluSx SINE Alu 1 291 -21 1206 104 12 0 chr9 16776903 16777066 -125494378 + AluSq SINE Alu 134 298 -15 3441 203 61 27 chr9 16777066 16777157 -125494287 - L1MB4 LINE L1 -866 5516 5430 2227 133 0 0 chr9 16777157 16777465 -125493979 - AluSq SINE Alu -5 308 1 3441 203 61 27 chr9 16777465 16778142 -125493302 - L1MB4 LINE L1 -952 5430 4712 2423 89 0 3 chr9 16778142 16778446 -125492998 - AluSp SINE Alu -10 303 1 3441 203 61 27 chr9 16778446 16778564 -125492880 - L1MB4 LINE L1 -1670 4712 4599 2157 110 10 0 chr9 16778564 16778854 -125492590 - AluSx SINE Alu -19 293 1 3130 204 113 96 chr9 16778854 16780327 -125491117 - L1MB4 LINE L1 -2170 4212 2715 1377 211 0 4 chr9 16780327 16780593 -125490851 - AluJb SINE Alu -8 304 40 278 266 28 9 chr9 16780593 16780702 -125490742 - L1MB4 LINE L1 -3657 2725 2615 611 204 18 0 chr9 16780716 16780829 -125490615 - FLAM_A SINE Alu -16 126 12 2181 123 3 0 chr9 16780862 16781155 -125490289 - AluSx SINE Alu -18 294 1 288 211 0 0 chr9 16781204 16781256 -125490188 + Tigger5 DNA MER2_type 4 55 -2268 * 305 221 70 0 chr9 16781248 16781334 -125490110 + Tigger5 DNA MER2_type 2215 2306 -17 1453 190 17 71 chr9 16781336 16781834 -125489610 - L1MB4 LINE L1 -4241 2143 1568 429 250 0 39 chr9 16781846 16781950 -125489494 + AluJo SINE Alu 121 220 -92 2666 47 0 0 chr9 16781989 16782289 -125489155 + AluY SINE Alu 1 300 -11 306 153 0 69 chr9 16782311 16782383 -125489061 - L1MB4 LINE L1 -4807 1577 1511 252 89 0 44 chr9 16782429 16782474 -125488970 - L1MA5 LINE L1 -4 6296 6254 915 168 25 3 chr9 16782534 16782706 -125488738 - L1P5 LINE L1 -473 5683 5514 5606 74 19 38 chr9 16782712 16783539 -125487905 - SVA Other Other 0 1386 575 23 33 0 0 chr9 16783541 16783571 -125487873 + GC_rich Low_complexity Low_complexity 1 30 0 4778 198 29 5 chr9 16783760 16784941 -125486503 - L1M LINE L1 -792 5354 4187 2000 70 30 4 chr9 16784969 16785239 -125486205 - AluSq SINE Alu -36 277 1 286 298 33 33 chr9 16785538 16785689 -125485755 - LTR41 LTR ERVL -622 151 1 24 53 0 0 chr9 16785711 16785749 -125485695 + AT_rich Low_complexity Low_complexity 1 38 0 2222 100 0 7 chr9 16785777 16786076 -125485368 - AluSx SINE Alu -15 297 1 894 158 6 25 chr9 16786223 16786381 -125485063 + AluJo SINE Alu 1 155 -157 361 75 0 0 chr9 16786565 16786618 -125484826 - Alu SINE Alu -247 53 1 243 250 13 53 chr9 16787873 16787949 -125483495 + MLT1K LTR MaLR 152 224 -364 842 269 123 48 chr9 16787996 16788579 -125482865 + MER77 LTR ERV1 66 652 -13 1602 260 26 33 chr9 16788877 16789550 -125481894 - L1PA13 LINE L1 -4718 2863 2256 434 318 7 0 chr9 16790273 16790424 -125481020 - L1PA13 LINE L1 -5276 2298 2147 676 346 27 29 chr9 16790448 16790896 -125480548 - L1PA13 LINE L1 -6200 1374 928 5904 74 25 13 chr9 16791106 16791962 -125479482 - SVA Other Other -518 868 3 442 228 41 0 chr9 16792020 16792165 -125479279 - L1M4 LINE L1 -5353 927 777 434 303 0 0 chr9 16792200 16792332 -125479112 - L1M4 LINE L1 -5595 685 554 254 257 110 68 chr9 16792449 16792686 -125478758 - L1M4 LINE L1 -6028 356 110 274 292 212 26 chr9 16792873 16792986 -125478458 + MIR SINE MIR 10 143 -119 220 298 184 18 chr9 16793178 16793292 -125478152 - MIR SINE MIR -128 134 2 1845 164 0 7 chr9 16793555 16793836 -125477608 + AluJo SINE Alu 3 281 -31 1554 187 56 4 chr9 16794409 16794677 -125476767 + AluJb SINE Alu 1 282 -30 1850 178 34 0 chr9 16794955 16795248 -125476196 - AluJo SINE Alu -7 305 3 906 232 60 45 chr9 16795307 16795643 -125475801 - MER74A LTR ERVL -63 495 155 220 340 21 10 chr9 16796107 16796204 -125475240 + L2 LINE L2 1741 1838 -1476 565 92 0 0 chr9 16796255 16796342 -125475102 - Alu SINE Alu 0 312 226 198 305 24 0 chr9 16796370 16796452 -125474992 + L2 LINE L2 1925 2008 -1306 212 399 101 4 chr9 16797024 16797252 -125474192 + L2 LINE L2 2808 3057 -215 2039 122 23 7 chr9 16797551 16797854 -125473590 - AluSx SINE Alu -4 308 1 261 0 0 0 chr9 16798279 16798308 -125473136 + (TA)n Simple_repeat Simple_repeat 1 29 0 2189 98 0 0 chr9 16798308 16798585 -125472859 - AluSp SINE Alu -7 306 30 292 296 58 47 chr9 16798889 16799061 -125472383 - MIR SINE MIR -49 213 40 494 257 41 35 chr9 16799165 16799336 -125472108 - MIR SINE MIR -55 207 36 423 252 204 7 chr9 16799379 16799526 -125471918 - MER5B DNA MER1_type -1 177 2 929 168 0 13 chr9 16800311 16800466 -125470978 + FAM SINE Alu 1 40 -9 1812 154 4 0 chr9 16800732 16801005 -125470439 - AluSx SINE Alu -37 275 2 488 207 35 41 chr9 16801038 16801066 -125470378 - Charlie1 DNA MER1_type 0 2761 2734 2253 88 10 0 chr9 16801066 16801361 -125470083 - AluSp SINE Alu -15 298 1 488 207 35 41 chr9 16801361 16801477 -125469967 - Charlie1 DNA MER1_type -27 2734 2618 2031 149 30 0 chr9 16802701 16803002 -125468442 + AluJb SINE Alu 2 311 -1 640 268 118 38 chr9 16803052 16803399 -125468045 + HAL1 LINE L1 1654 2028 -479 2311 80 10 0 chr9 16803399 16803699 -125467745 + AluY SINE Alu 1 303 -8 346 264 125 42 chr9 16803862 16804006 -125467438 + HAL1 LINE L1 2342 2497 -10 2105 132 7 0 chr9 16804028 16804323 -125467121 + AluSx SINE Alu 1 297 -15 2290 102 0 13 chr9 16804441 16804609 -125466835 - AluSx SINE Alu -11 301 137 2386 88 3 0 chr9 16804609 16804917 -125466527 - AluSp SINE Alu -4 309 1 2290 102 0 13 chr9 16804917 16805053 -125466391 - AluSx SINE Alu -175 137 1 1827 185 0 0 chr9 16805214 16805511 -125465933 - AluJo SINE Alu -15 297 1 320 360 50 14 chr9 16805687 16805826 -125465618 - MIR3 SINE MIR -7 201 58 1907 173 0 0 chr9 16806056 16806356 -125465088 + AluJo SINE Alu 1 300 -12 272 279 107 0 chr9 16807100 16807222 -125464222 - MER103 DNA DNA 0 166 32 345 151 151 23 chr9 16807423 16807509 -125463935 + FLAM_C SINE Alu 37 133 0 942 154 84 44 chr9 16807546 16807773 -125463671 + MER46A DNA MER2_type 1 236 0 302 234 86 16 chr9 16808849 16808977 -125462467 - L1M4 LINE L1 -855 5291 5155 2275 102 0 0 chr9 16809140 16809433 -125462011 - AluSq SINE Alu -20 293 1 1704 170 0 7 chr9 16809914 16810203 -125461241 - AluJb SINE Alu -24 288 2 1378 90 0 0 chr9 16811958 16812135 -125459309 - AluSg/x SINE Alu -3 309 133 306 0 0 0 chr9 16812236 16812270 -125459174 + (GGGTG)n Simple_repeat Simple_repeat 3 36 0 2152 115 10 3 chr9 16814840 16815145 -125456299 + AluSq SINE Alu 1 307 -6 264 210 170 62 chr9 16816217 16816441 -125455003 + L1MC5 LINE L1 7670 7917 -44 2236 100 3 10 chr9 16816583 16816884 -125454560 + AluSp SINE Alu 3 301 -12 1830 128 153 8 chr9 16816885 16817276 -125454168 - Tigger4(Zombi) DNA MER2_type -392 2339 1892 28 29 0 0 chr9 16819378 16819413 -125452031 + AT_rich Low_complexity Low_complexity 1 35 0 216 0 0 0 chr9 16819677 16819701 -125451743 + (A)n Simple_repeat Simple_repeat 1 24 0 2026 148 23 0 chr9 16822370 16822675 -125448769 + AluSx SINE Alu 1 312 0 340 257 44 26 chr9 16823700 16823813 -125447631 - MIR3 SINE MIR -9 199 85 349 248 120 8 chr9 16824178 16824311 -125447133 + L1MC/D LINE L1 5547 5694 -2114 1052 141 22 0 chr9 16825962 16826146 -125445298 - L1MA8 LINE L1 -10 6281 6094 21 57 0 0 chr9 16826512 16826547 -125444897 + AT_rich Low_complexity Low_complexity 1 35 0 1656 145 54 14 chr9 16826601 16826897 -125444547 + AluJo SINE Alu 1 308 -4 1948 152 13 3 chr9 16829384 16829687 -125441757 + AluSx SINE Alu 1 306 -6 255 267 57 48 chr9 16829904 16830009 -125441435 + MER5B DNA MER1_type 68 173 -5 1898 132 42 17 chr9 16830155 16830443 -125441001 + AluSg SINE Alu 1 295 -15 200 324 42 0 chr9 16832300 16832371 -125439073 + L2 LINE L2 3169 3242 -71 623 147 0 0 chr9 16832492 16832587 -125438857 + AluSg SINE Alu 37 131 -179 2241 108 0 40 chr9 16832590 16832915 -125438529 + AluSx SINE Alu 1 312 0 1115 194 61 68 chr9 16832945 16833061 -125438383 + AluJo SINE Alu 14 129 -183 2186 111 3 35 chr9 16833061 16833196 -125438248 + AluSx SINE Alu 1 139 -173 1996 128 30 7 chr9 16833196 16833500 -125437944 + AluSx SINE Alu 1 311 -1 2186 111 3 35 chr9 16833500 16833679 -125437765 + AluSx SINE Alu 139 305 -7 1115 194 61 68 chr9 16833679 16833840 -125437604 + AluJo SINE Alu 129 289 -23 351 225 106 56 chr9 16834367 16834509 -125436935 - MIR SINE MIR -1 261 113 393 295 124 60 chr9 16835386 16835526 -125435918 - MIR SINE MIR -12 250 90 2272 100 3 0 chr9 16835526 16835827 -125435617 + AluSp SINE Alu 1 302 -11 393 295 124 60 chr9 16835827 16835903 -125435541 - MIR SINE MIR -172 90 20 285 217 48 48 chr9 16835959 16836042 -125435402 - MIR SINE MIR -110 152 70 561 234 72 51 chr9 16836551 16836670 -125434774 + MLT1E LTR MaLR 108 264 -362 2133 120 0 3 chr9 16836670 16836970 -125434474 + AluSg SINE Alu 1 299 -11 561 234 72 51 chr9 16836970 16837040 -125434404 + MLT1E LTR MaLR 264 331 -295 383 310 9 0 chr9 16837711 16837827 -125433617 - MIR SINE MIR -36 226 110 735 112 0 0 chr9 16837838 16837936 -125433508 + L1P LINE L1 1 98 -6048 * 33317 60 7 3 chr9 16837934 16842207 -125429237 + L1P LINE L1 847 5138 -1008 823 135 16 0 chr9 16843243 16843369 -125428075 - AluJo/FRAM SINE Alu -6 306 179 444 129 99 59 chr9 16843365 16843466 -125427978 + AluJb SINE Alu 198 302 -10 * 2035 126 0 23 chr9 16843571 16843881 -125427563 + AluSx SINE Alu 5 307 -5 180 321 149 30 chr9 16843981 16844115 -125427329 - L2 LINE L2 -7 3265 3116 2100 125 3 10 chr9 16844303 16844614 -125426830 + AluSg SINE Alu 1 309 -1 974 70 0 0 chr9 16844879 16844994 -125426450 + AluY SINE Alu 21 135 -176 2359 68 3 0 chr9 16844994 16845286 -125426158 + AluY SINE Alu 1 293 -18 2234 117 3 3 chr9 16845580 16845887 -125425557 + AluSq SINE Alu 1 307 -6 417 55 55 0 chr9 16846597 16846652 -125424792 + L1MB2 LINE L1 6068 6125 -46 2498 82 0 0 chr9 16846656 16846960 -125424484 + AluSx SINE Alu 2 305 -7 1568 210 49 10 chr9 16847201 16847795 -125423649 + MER82 DNA MER2_type 15 653 0 368 274 0 0 chr9 16847821 16847905 -125423539 - Tigger5 DNA MER2_type 0 2323 2240 231 156 16 156 chr9 16847920 16847960 -125423484 - Tigger5 DNA MER2_type -311 55 11 1986 119 91 26 chr9 16847960 16848312 -125423132 - THE1C LTR MaLR 0 375 1 10134 120 68 8 chr9 16848312 16849803 -125421641 - THE1C-int LTR MaLR 0 1580 1 1897 139 85 26 chr9 16849805 16850157 -125421287 - THE1C LTR MaLR -2 373 1 231 156 16 156 chr9 16850157 16850176 -125421268 - Tigger5 DNA MER2_type -355 11 1 2281 107 7 0 chr9 16850539 16850848 -125420596 + AluSp SINE Alu 1 311 -2 336 263 184 13 chr9 16851198 16851350 -125420094 + HAL1 LINE L1 2 179 -2328 267 250 28 0 chr9 16851358 16851430 -125420014 + HAL1 LINE L1 241 314 -2193 21 0 0 0 chr9 16851473 16851494 -125419950 + AT_rich Low_complexity Low_complexity 1 21 0 4104 201 94 14 chr9 16851615 16852562 -125418882 - Tigger6a DNA MER2_type -59 1024 2 2505 169 88 56 chr9 16853082 16853580 -125417864 + L1MB8 LINE L1 5395 5920 -258 2346 90 0 10 chr9 16853580 16853879 -125417565 - AluSg SINE Alu -14 296 1 2505 169 88 56 chr9 16853879 16854025 -125417419 + L1MB8 LINE L1 5920 6060 -118 2063 133 0 19 chr9 16854382 16854698 -125416746 + AluSx SINE Alu 1 310 -2 332 265 94 17 chr9 16855291 16855408 -125416036 - MIR3 SINE MIR -17 191 66 2208 110 0 7 chr9 16855846 16856146 -125415298 + AluSx SINE Alu 1 298 -14 30 0 0 0 chr9 16856314 16856344 -125415100 + AT_rich Low_complexity Low_complexity 1 30 0 2099 98 3 20 chr9 16856439 16856736 -125414708 + AluY SINE Alu 1 292 -19 524 236 91 30 chr9 16857270 16857435 -125414009 - MIR SINE MIR -35 227 53 314 239 177 0 chr9 16857527 16857640 -125413804 - L2 LINE L2 -5 3308 3176 353 268 43 73 chr9 16857830 16857994 -125413450 - L2 LINE L2 -472 2842 2684 490 163 139 54 chr9 16857997 16858095 -125413349 + MER2 DNA MER2_type 1 114 -231 243 0 0 0 chr9 16858095 16858122 -125413322 + (TA)n Simple_repeat Simple_repeat 2 28 0 490 163 139 54 chr9 16858122 16858152 -125413292 + MER2 DNA MER2_type 114 140 -205 1664 123 67 21 chr9 16858153 16858437 -125413007 + MER1B DNA MER1_type 3 299 -40 1179 159 48 5 chr9 16858441 16858648 -125412796 + MER2 DNA MER2_type 130 345 0 692 187 15 60 chr9 16858693 16858827 -125412617 - FLAM_A SINE Alu -5 128 1 297 273 71 71 chr9 16858876 16859030 -125412414 - L2 LINE L2 -749 2565 2412 2129 134 3 0 chr9 16859339 16859646 -125411798 + AluSx SINE Alu 1 308 -4 1323 169 54 65 chr9 16859649 16859928 -125411516 + AluJo SINE Alu 21 296 -16 2189 127 0 0 chr9 16860000 16860299 -125411145 - AluSg SINE Alu -11 299 1 2204 69 0 4 chr9 16860737 16861013 -125410431 + AluY SINE Alu 28 302 -9 717 226 37 47 chr9 16861101 16861214 -125410230 - MER5A DNA MER1_type 0 189 77 1620 158 90 0 chr9 16861214 16861492 -125409952 - AluJb SINE Alu -9 303 1 717 226 37 47 chr9 16861492 16861568 -125409876 - MER5A DNA MER1_type -112 77 2 561 218 259 14 chr9 16861788 16862008 -125409436 + L1MB8 LINE L1 5904 6177 -1 21 0 0 0 chr9 16862909 16862930 -125408514 + AT_rich Low_complexity Low_complexity 1 21 0 745 229 201 14 chr9 16863009 16863293 -125408151 + MER46C DNA MER2_type 1 337 -1 572 254 113 11 chr9 16863435 16863620 -125407824 - MER113 DNA MER1_type? -86 435 232 1903 148 34 0 chr9 16863623 16863914 -125407530 + AluSg SINE Alu 1 301 -9 194 250 167 12 chr9 16865691 16865775 -125405669 - MIR3 SINE MIR -27 181 85 200 186 0 51 chr9 16866794 16866853 -125404591 + G-rich Low_complexity Low_complexity 4 59 0 471 245 231 0 chr9 16869027 16869174 -125402270 + MER5A DNA MER1_type 9 189 0 272 118 0 20 chr9 16869577 16869628 -125401816 + (GGGGA)n Simple_repeat Simple_repeat 4 53 0 406 211 57 52 chr9 16869874 16870024 -125401420 - MIR SINE MIR -46 162 18 2203 93 0 3 chr9 16870409 16870699 -125400745 + AluSg SINE Alu 2 290 -20 2112 125 0 35 chr9 16871482 16871795 -125399649 - AluSx SINE Alu -10 302 1 2212 118 0 7 chr9 16871795 16872099 -125399345 - AluSx SINE Alu -6 306 5 458 248 70 13 chr9 16872527 16872684 -125398760 + MER103 DNA DNA 1 166 0 586 269 76 0 chr9 16872952 16873123 -125398321 + MIR SINE MIR 21 204 -58 1575 192 0 28 chr9 16873323 16873686 -125397758 - AluJo SINE Alu 0 312 1 5304 126 66 7 chr9 16873713 16874573 -125396871 - L1MC1 LINE L1 0 6333 5423 1669 151 43 0 chr9 16874857 16875136 -125396308 - AluJo SINE Alu -19 293 3 1428 218 15 206 chr9 16875175 16875538 -125395906 - L1MD3 LINE L1 0 7995 7493 829 110 17 0 chr9 16875538 16875656 -125395788 - AluSg/x SINE Alu -5 307 188 1428 218 15 206 chr9 16875656 16875919 -125395525 - L1MD3 LINE L1 -502 7493 7182 246 226 11 118 chr9 16875919 16876012 -125395432 - MLT1F1 LTR MaLR -450 117 35 318 133 33 0 chr9 16876014 16876074 -125395370 - L1MD3 LINE L1 -877 7118 7057 1117 184 88 102 chr9 16876541 16876896 -125394548 - Charlie2a DNA MER1_type -53 2809 2451 2300 112 0 0 chr9 16876896 16877192 -125394252 + AluSx SINE Alu 1 296 -16 1117 184 88 102 chr9 16877192 16877534 -125393910 - Charlie2a DNA MER1_type -411 2451 986 626 175 100 33 chr9 16877534 16877654 -125393790 - FLAM_A SINE Alu -7 135 8 234 229 42 0 chr9 16877723 16877771 -125393673 - MER2 DNA MER2_type 0 345 296 473 160 24 0 chr9 16877878 16877966 -125393478 - MER2 DNA MER2_type -150 89 1 720 238 28 14 chr9 16877970 16878184 -125393260 - Charlie2a DNA MER1_type -1974 888 672 867 186 17 47 chr9 16878184 16878356 -125393088 + FRAM SINE Alu 1 159 -17 272 292 115 10 chr9 16878386 16878482 -125392962 - Charlie2a DNA MER1_type -2230 632 527 3994 195 51 56 chr9 16879483 16880466 -125390978 - L1MD1 LINE L1 -12 6230 5253 189 0 0 0 chr9 16880506 16880527 -125390917 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 1854 100 77 0 chr9 16880527 16880787 -125390657 - AluSx SINE Alu -32 280 1 3641 123 10 0 chr9 16881141 16881646 -125389798 + MER75 DNA T2_type 5 514 0 1536 252 28 9 chr9 16881722 16882151 -125389293 - L1MD1 LINE L1 -858 5288 4852 1770 194 9 13 chr9 16882188 16882503 -125388941 - 7SLRNA srpRNA srpRNA -6 314 1 186 167 44 9 chr9 16882531 16882645 -125388799 + (TA)n Simple_repeat Simple_repeat 1 118 0 792 216 92 79 chr9 16882661 16883040 -125388404 - L1MD1 LINE L1 -1564 4582 4199 528 264 17 6 chr9 16883043 16883217 -125388227 - L1MD1 LINE L1 -3357 2789 2614 772 176 0 29 chr9 16883223 16883359 -125388085 - FLAM_C SINE Alu -1 132 1 22 0 0 0 chr9 16883374 16883396 -125388048 + GC_rich Low_complexity Low_complexity 1 22 0 592 105 0 23 chr9 16884309 16884395 -125387049 - AluSg/x SINE Alu -21 289 206 968 90 0 8 chr9 16884495 16884628 -125386816 + AluSg/x SINE Alu 171 302 -10 1189 285 60 70 chr9 16884852 16885470 -125385974 - MER89-int LTR ERV1 -426 4221 3610 658 158 71 24 chr9 16885473 16885600 -125385844 + FLAM_C SINE Alu 1 133 0 2251 80 0 11 chr9 16885633 16885942 -125385502 + AluY SINE Alu 1 306 0 322 341 71 0 chr9 16885966 16886092 -125385352 - MER89-int LTR ERV1 -1044 3603 3469 1125 239 64 98 chr9 16886102 16886663 -125384781 - MER77 LTR ERV1 -8 597 138 1724 174 0 27 chr9 16886770 16887105 -125384339 + AluJb SINE Alu 1 312 0 2420 90 0 19 chr9 16887112 16887424 -125384020 + AluSx SINE Alu 1 306 -6 331 208 75 38 chr9 16887510 16887616 -125383828 - MER89-int LTR ERV1 -1218 3429 3320 841 253 64 67 chr9 16887665 16888053 -125383391 - MER89-int LTR ERV1 -1319 3328 2942 347 316 101 6 chr9 16888109 16888277 -125383167 - MER89-int LTR ERV1 -1640 5161 4978 26 0 0 0 chr9 16888680 16888706 -125382738 + AT_rich Low_complexity Low_complexity 1 26 0 550 118 18 18 chr9 16888734 16888844 -125382600 + L1MDb LINE L1 1081 1190 -5219 477 195 20 141 chr9 16888996 16889246 -125382198 - LTR50 LTR ERVL 0 795 556 2153 84 27 3 chr9 16889262 16889560 -125381884 - AluSq SINE Alu -8 305 1 343 298 33 33 chr9 16889859 16890010 -125381434 - LTR41 LTR ERVL -622 151 1 24 53 0 0 chr9 16890032 16890070 -125381374 + AT_rich Low_complexity Low_complexity 1 38 0 2227 100 0 7 chr9 16890098 16890397 -125381047 - AluSx SINE Alu -15 297 1 25982 50 3 62 chr9 16890577 16894509 -125376935 + L1PA5 LINE L1 2264 6152 -2 269 291 12 58 chr9 16894524 16894610 -125376834 - MIR SINE MIR -158 104 23 633 238 181 5 chr9 16895246 16895456 -125375988 - MIR SINE MIR -15 247 1 402 343 22 15 chr9 16895585 16895719 -125375725 - MIR3 SINE MIR -21 187 53 2434 51 0 3 chr9 16895876 16896171 -125375273 + AluY SINE Alu 2 295 -16 222 274 113 48 chr9 16896482 16896606 -125374838 - L2 LINE L2 0 3313 3182 414 0 0 0 chr9 16897879 16897925 -125373519 + (CA)n Simple_repeat Simple_repeat 2 47 0 28 0 0 0 chr9 16898483 16898511 -125372933 + AT_rich Low_complexity Low_complexity 1 28 0 1025 144 0 0 chr9 16898511 16898664 -125372780 - AluJb SINE Alu 0 312 160 2577 43 0 7 chr9 16898683 16898985 -125372459 + AluY SINE Alu 1 300 -11 240 381 48 0 chr9 16899101 16899206 -125372238 - L2 LINE L2 0 3272 3163 213 312 144 8 chr9 16899355 16899480 -125371964 - L2 LINE L2 -447 2867 2726 22 35 0 0 chr9 16900085 16900114 -125371330 + AT_rich Low_complexity Low_complexity 1 29 0 1383 44 12 0 chr9 16900674 16900834 -125370610 - L1PA7 LINE L1 -2 6152 5991 190 363 26 18 chr9 16900964 16901077 -125370367 + L2 LINE L2 2694 2807 -507 712 161 113 32 chr9 16901283 16901407 -125370037 - AluJb SINE Alu -177 135 2 204 228 18 18 chr9 16901408 16901465 -125369979 - MIR SINE MIR -6 256 200 252 0 0 0 chr9 16901466 16901493 -125369951 + MSTD LTR MaLR 1 27 -369 907 107 119 36 chr9 16901494 16901662 -125369782 + Tigger1 DNA MER2_type 421 602 -1816 459 217 94 29 chr9 16901662 16901800 -125369644 + AluSg/x SINE Alu 129 275 -35 3123 144 52 8 chr9 16901800 16902334 -125369110 + Tigger1 DNA MER2_type 622 1179 -1239 2355 104 0 0 chr9 16902337 16902634 -125368810 + AluSx SINE Alu 1 297 -15 2190 103 14 0 chr9 16902638 16902929 -125368515 + AluY SINE Alu 3 297 -14 24 0 0 0 chr9 16902929 16902953 -125368491 + AT_rich Low_complexity Low_complexity 1 24 0 1072 90 7 0 chr9 16902956 16903101 -125368343 + Tigger1 DNA MER2_type 1465 1610 -808 1841 143 0 0 chr9 16903139 16903404 -125368040 + AluSx SINE Alu 43 307 -5 1453 175 7 42 chr9 16903415 16903700 -125367744 - AluJo SINE Alu -29 283 9 1956 89 13 73 chr9 16903708 16903945 -125367499 + Tigger1 DNA MER2_type 1607 1857 -561 7080 79 42 8 chr9 16903945 16904977 -125366467 - L1PA10 LINE L1 0 6168 5133 829 122 0 0 chr9 16904977 16905084 -125366360 - U6 snRNA snRNA 0 107 1 1956 89 13 73 chr9 16905084 16905158 -125366286 + Tigger1 DNA MER2_type 1855 1900 -518 937 192 0 0 chr9 16905161 16905328 -125366116 - AluJb SINE Alu -6 306 140 1743 179 0 3 chr9 16905329 16905614 -125365830 - AluJb SINE Alu -20 292 9 1015 152 0 0 chr9 16905621 16905772 -125365672 + Tigger1 DNA MER2_type 2268 2418 0 2100 169 68 3 chr9 16905774 16906159 -125365285 + L1MC1 LINE L1 5924 6333 0 1967 161 3 0 chr9 16906298 16906603 -125364841 + AluSp SINE Alu 1 306 -7 728 194 0 16 chr9 16906606 16906735 -125364709 - FLAM_A SINE Alu -6 127 1 232 216 149 14 chr9 16906805 16906879 -125364565 + MLT1L LTR MaLR 2 85 -530 327 197 16 0 chr9 16906951 16907012 -125364432 + MLT1J LTR MaLR 112 173 -338 351 259 47 59 chr9 16907029 16907186 -125364258 + MLT1L LTR MaLR 439 593 -22 632 186 107 79 chr9 16907186 16907363 -125364081 + MER63A DNA MER1_type 1 182 -28 2322 102 7 0 chr9 16907642 16907817 -125363627 - AluSc SINE Alu -3 306 127 212 31 62 0 chr9 16907817 16907849 -125363595 + T-rich Low_complexity Low_complexity 2 35 0 2322 102 7 0 chr9 16907849 16907977 -125363467 - AluSc SINE Alu -182 127 1 1600 199 16 7 chr9 16908023 16908330 -125363114 + AluJb SINE Alu 1 310 -2 1040 248 51 0 chr9 16908346 16908600 -125362844 + MER110 LTR ERV1 225 491 0 402 297 61 47 chr9 16908600 16908812 -125362632 - L1ME LINE L1 -513 5608 5394 2406 61 0 3 chr9 16909481 16909810 -125361634 - AluY SINE Alu 0 328 1 1561 203 0 0 chr9 16910573 16910859 -125360585 + AluJo SINE Alu 5 290 -22 396 184 133 63 chr9 16910935 16911028 -125360416 - L1ME LINE L1 -1306 4840 4730 1805 182 0 7 chr9 16911028 16911336 -125360108 - AluJb SINE Alu -6 306 1 396 184 133 63 chr9 16911336 16911400 -125360044 - L1ME LINE L1 -1416 4730 4672 476 248 30 23 chr9 16911413 16911546 -125359898 - L2 LINE L2 0 3313 3180 910 188 134 5 chr9 16911550 16911774 -125359670 + MER110 LTR ERV1 1 253 -238 28 29 0 0 chr9 16912311 16912346 -125359098 + AT_rich Low_complexity Low_complexity 1 35 0 689 160 61 38 chr9 16912350 16912481 -125358963 - AluJo SINE Alu -176 136 3 2512 51 0 0 chr9 16912493 16912788 -125358656 - AluY SINE Alu -16 295 1 634 175 0 33 chr9 16912927 16913047 -125358397 - AluSg/x SINE Alu 0 309 194 1539 153 14 37 chr9 16913114 16913409 -125358035 + AluJb SINE Alu 1 288 -24 180 200 0 0 chr9 16913493 16913538 -125357906 + (TA)n Simple_repeat Simple_repeat 2 46 0 24 53 0 0 chr9 16913959 16913997 -125357447 + AT_rich Low_complexity Low_complexity 1 38 0 2458 50 0 0 chr9 16913997 16914329 -125357115 + AluY SINE Alu 1 332 0 2144 103 0 7 chr9 16914575 16914892 -125356552 + AluSg SINE Alu 1 315 0 298 130 0 37 chr9 16915087 16915141 -125356303 - Alu SINE Alu 0 302 251 9404 85 11 7 chr9 16915143 16916444 -125355000 - L1P LINE L1 -3993 2153 847 735 112 0 0 chr9 16916442 16916540 -125354904 - L1P LINE L1 -6048 98 1 * 383 310 9 0 chr9 16916551 16916667 -125354777 + MIR SINE MIR 110 226 -36 561 234 72 51 chr9 16917338 16917408 -125354036 - MLT1E LTR MaLR -295 331 264 2133 120 0 3 chr9 16917408 16917708 -125353736 - AluSg SINE Alu -11 299 1 561 234 72 51 chr9 16917708 16917827 -125353617 - MLT1E LTR MaLR -362 264 108 285 217 48 48 chr9 16918336 16918419 -125353025 + MIR SINE MIR 70 152 -110 393 295 124 60 chr9 16918475 16918551 -125352893 + MIR SINE MIR 20 90 -172 2272 100 3 0 chr9 16918551 16918852 -125352592 - AluSp SINE Alu -11 302 1 393 295 124 60 chr9 16918852 16918992 -125352452 + MIR SINE MIR 90 250 -12 619 205 186 0 chr9 16920173 16920388 -125351056 + MER5C DNA MER1_type 70 324 0 1276 118 0 27 chr9 16920501 16920687 -125350757 - AluSg/x SINE Alu -9 303 123 689 171 16 31 chr9 16920768 16920897 -125350547 - FLAM_A SINE Alu -6 127 1 4112 194 37 32 chr9 16920967 16921691 -125349753 - L1MB7 LINE L1 -209 5975 5256 1917 161 0 3 chr9 16921691 16921995 -125349449 + AluSx SINE Alu 1 303 -9 4112 194 37 32 chr9 16921995 16922443 -125349001 - L1MB7 LINE L1 -928 5256 4812 1970 114 18 0 chr9 16922443 16922716 -125348728 - AluSg SINE Alu -14 296 19 4112 194 37 32 chr9 16922716 16923075 -125348369 - L1MB7 LINE L1 -1372 4812 4432 1893 155 10 0 chr9 16923075 16923366 -125348078 - AluJo SINE Alu -18 294 1 4112 194 37 32 chr9 16923366 16923442 -125348002 - L1MB7 LINE L1 -1752 4432 4358 2174 110 7 7 chr9 16923536 16923837 -125347607 - AluSp SINE Alu -12 301 1 6481 45 4 32 chr9 16923863 16924699 -125346745 - SVA Other Other 0 1386 575 1705 163 4 4 chr9 16924802 16925079 -125346365 - AluSc SINE Alu -32 277 1 2332 119 3 0 chr9 16925184 16925496 -125345948 - AluSq SINE Alu 0 313 1 224 217 0 0 chr9 16925502 16925548 -125345896 - L2 LINE L2 0 3272 3227 331 272 147 15 chr9 16925822 16925958 -125345486 - MIR SINE MIR -50 212 59 210 191 24 0 chr9 16926135 16926177 -125345267 + (CATATA)n Simple_repeat Simple_repeat 2 44 0 1901 264 121 63 chr9 16927175 16928102 -125343342 + HAL1 LINE L1 64 936 -1571 2009 143 3 3 chr9 16928102 16928409 -125343035 + AluSq SINE Alu 1 307 -6 1901 264 121 63 chr9 16928409 16928531 -125342913 + HAL1 LINE L1 936 1050 -1457 2494 62 0 0 chr9 16928531 16928839 -125342605 - AluY SINE Alu -3 308 1 1901 264 121 63 chr9 16928839 16928916 -125342528 + HAL1 LINE L1 1050 1256 -1251 611 255 205 20 chr9 16928939 16929139 -125342305 - MIR SINE MIR -25 237 1 226 206 234 65 chr9 16929147 16929331 -125342113 + HAL1 LINE L1 1266 1480 -1027 1799 121 34 1 chr9 16929347 16929803 -125341641 + L1P4 LINE L1 5026 5492 -669 2684 43 0 0 chr9 16929803 16930105 -125341339 + AluY SINE Alu 1 302 -9 5298 195 37 33 chr9 16930107 16930421 -125341023 + L1MB7 LINE L1 4119 4430 -1754 1893 155 10 0 chr9 16930421 16930712 -125340732 + AluJo SINE Alu 1 294 -18 5298 195 37 33 chr9 16930712 16931071 -125340373 + L1MB7 LINE L1 4430 4786 -1398 1979 113 18 0 chr9 16931071 16931345 -125340099 + AluSg SINE Alu 19 297 -13 5298 195 37 33 chr9 16931345 16931793 -125339651 + L1MB7 LINE L1 4786 5231 -953 1834 168 3 3 chr9 16931793 16932096 -125339348 - AluSx SINE Alu -9 303 1 5298 195 37 33 chr9 16932096 16932779 -125338665 + L1MB7 LINE L1 5231 5933 -251 7895 36 0 2 chr9 16932880 16934427 -125337017 + L1PA3 LINE L1 4609 6154 -1 46 54 0 0 chr9 16934448 16934522 -125336922 + AT_rich Low_complexity Low_complexity 1 74 0 235 273 80 57 chr9 16934683 16934859 -125336585 - HAL1 LINE L1 -1963 544 365 2369 156 38 7 chr9 16934881 16935298 -125336146 - L1MB8 LINE L1 -11 6167 5738 1103 148 28 12 chr9 16935298 16935518 -125335926 - MLT2A2 LTR ERVL 0 453 295 456 189 11 0 chr9 16935524 16935614 -125335830 - L1MB8 LINE L1 -782 5392 5302 1850 116 30 7 chr9 16935642 16935944 -125335500 - MLT2A2 LTR ERVL -144 309 1 2155 172 11 18 chr9 16935946 16936388 -125335056 - L1M4 LINE L1 -438 5740 5302 2041 154 0 3 chr9 16936706 16937011 -125334433 + AluJb SINE Alu 1 304 -8 2319 119 0 0 chr9 16937213 16937525 -125333919 + AluSx SINE Alu 1 312 0 202 292 150 0 chr9 16937851 16937964 -125333480 - MIR SINE MIR -56 206 77 956 35 28 14 chr9 16938252 16938393 -125333051 + (TTTC)n Simple_repeat Simple_repeat 2 144 0 789 157 0 0 chr9 16938400 16938515 -125332929 - FLAM_A SINE Alu -18 115 1 235 71 48 0 chr9 16939140 16939182 -125332262 + CT-rich Low_complexity Low_complexity 1 44 0 1013 186 0 17 chr9 16939685 16939862 -125331582 + FAM SINE Alu 1 174 -1 291 282 13 0 chr9 16940067 16940145 -125331299 + L2 LINE L2 3221 3299 -14 1604 36 5 0 chr9 16940377 16940569 -125330875 - L1PA3 LINE L1 -2 6153 5961 194 345 134 8 chr9 16942156 16942275 -125329169 - MIR3 SINE MIR -54 154 21 30221 38 5 0 chr9 16942653 16947296 -125324148 - L1PA4 LINE L1 0 6155 1497 2122 116 3 0 chr9 16947904 16948189 -125323255 - AluSg SINE Alu -24 286 1 1350 253 122 78 chr9 16948189 16948573 -125322871 - HAL1 LINE L1 -1424 1083 717 2149 118 48 25 chr9 16948573 16948929 -125322515 - THE1B LTR MaLR 0 364 1 1350 253 122 78 chr9 16948929 16949031 -125322413 - HAL1 LINE L1 -1790 717 621 1654 178 10 27 chr9 16949031 16949323 -125322121 + AluJo SINE Alu 1 287 -25 1350 253 122 78 chr9 16949323 16949778 -125321666 - HAL1 LINE L1 -1886 621 100 308 282 10 0 chr9 16949828 16949931 -125321513 - L1MC4 LINE L1 -15 8027 7924 221 235 0 0 chr9 16949934 16949985 -125321459 + (TCCA)n Simple_repeat Simple_repeat 3 53 0 239 258 0 0 chr9 16949997 16950059 -125321385 - L1MC4 LINE L1 -155 7887 7826 2766 237 23 34 chr9 16950094 16950149 -125321295 - L1ME2 LINE L1 -13 6151 6097 1923 160 7 0 chr9 16950149 16950436 -125321008 - AluSx SINE Alu -11 301 13 2766 237 23 34 chr9 16950436 16951214 -125320230 - L1ME2 LINE L1 -67 6097 5327 281 255 49 29 chr9 16951214 16951316 -125320128 + MIR3 SINE MIR 89 192 -16 388 220 105 55 chr9 16951366 16951531 -125319913 + MER39 LTR ERV1 4 165 -377 * 1448 169 116 11 chr9 16951526 16951888 -125319556 + MER39 LTR ERV1 308 707 0 2353 63 0 10 chr9 16951978 16952278 -125319166 + AluSg1 SINE Alu 2 298 -11 3485 91 40 22 chr9 16952361 16952715 -125318729 - L1PB1 LINE L1 -1 6150 5781 2336 74 17 0 chr9 16952715 16953011 -125318433 - AluSc SINE Alu -8 301 1 3485 91 40 22 chr9 16953011 16953204 -125318240 - L1PB1 LINE L1 -370 5781 5593 * 10141 67 4 0 chr9 16953203 16955308 -125316136 - L1PA7 LINE L1 0 6154 4047 2403 147 18 20 chr9 16955308 16956148 -125315296 - L1PB1 LINE L1 -551 5600 4769 949 173 85 8 chr9 16956212 16956460 -125314984 + L1ME3A LINE L1 5686 5952 -218 2725 126 36 2 chr9 16956841 16957255 -125314189 + MSTA LTR MaLR 1 428 0 490 284 154 47 chr9 16957255 16957759 -125313685 - HAL1 LINE L1 -1633 874 263 1860 185 22 16 chr9 16957759 16958122 -125313322 + MLT1A1 LTR MaLR 1 365 0 490 284 154 47 chr9 16958122 16958364 -125313080 - HAL1 LINE L1 -2244 263 48 978 227 38 0 chr9 16958940 16959178 -125312266 - L1M4 LINE L1 -487 5691 5445 1285 120 34 4 chr9 16959178 16959412 -125312032 - MER6 DNA MER2_type -4 861 621 2339 87 3 7 chr9 16959429 16959738 -125311706 - AluSg SINE Alu 0 310 3 285 133 0 3 chr9 16959741 16959799 -125311645 - L1M4 LINE L1 -745 5429 5373 * 1474 218 31 6 chr9 16959798 16960151 -125311293 - L1M4 LINE L1 -5595 947 586 915 236 3 76 chr9 16960168 16960498 -125310946 - L1M4 LINE L1 -6202 340 35 410 286 9 0 chr9 16960649 16960754 -125310690 - HAL1 LINE L1 -1667 840 735 361 260 174 21 chr9 16960778 16961151 -125310293 + L1M4 LINE L1 3430 3859 -2287 1703 174 13 7 chr9 16961695 16961861 -125309583 - AluJb SINE Alu -11 301 131 2279 114 0 3 chr9 16961861 16962169 -125309275 - AluSx SINE Alu -5 307 1 1703 174 13 7 chr9 16962169 16962301 -125309143 - AluJb SINE Alu -181 131 1 36 53 0 0 chr9 16962339 16962396 -125309048 + AT_rich Low_complexity Low_complexity 1 57 0 1326 105 0 20 chr9 16962758 16962958 -125308486 - MSTA LTR MaLR 0 428 233 1934 123 15 9 chr9 16962959 16963291 -125308153 - L1P3 LINE L1 -4844 1617 1284 1290 76 0 0 chr9 16963297 16963455 -125307989 - AluY SINE Alu -15 296 139 794 190 6 49 chr9 16963579 16963742 -125307702 - AluJb SINE Alu -20 292 137 183 42 0 0 chr9 16963744 16963768 -125307676 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2329 63 0 3 chr9 16963768 16964052 -125307392 - AluY SINE Alu -28 283 1 6819 136 27 32 chr9 16964062 16965338 -125306106 - L1P3 LINE L1 -5183 1278 10 12111 137 26 22 chr9 16965356 16967342 -125304102 + Tigger1 DNA MER2_type 221 2218 -200 2087 139 0 3 chr9 16967342 16967643 -125303801 - AluSx SINE Alu -12 300 1 12111 137 26 22 chr9 16967643 16967844 -125303600 + Tigger1 DNA MER2_type 2218 2417 -1 4865 114 6 1 chr9 16967960 16968670 -125302774 + L1PA13 LINE L1 5447 6159 -4 288 0 0 0 chr9 16969852 16969884 -125301560 + (CA)n Simple_repeat Simple_repeat 1 32 0 30699 61 4 1 chr9 16970650 16974796 -125296648 - L1P LINE L1 -1980 4166 7 2311 105 0 7 chr9 16976147 16976453 -125294991 - AluSx SINE Alu -8 304 1 2104 79 0 34 chr9 16976461 16976753 -125294691 - AluY SINE Alu -3 308 27 6552 73 21 12 chr9 16976753 16977826 -125293618 - L1PA10 LINE L1 -14 6154 5074 1515 186 76 3 chr9 16978402 16978693 -125292751 - AluJo SINE Alu 0 312 1 2184 93 6 35 chr9 16978894 16979207 -125292237 + AluSg SINE Alu 1 304 -6 1524 137 90 13 chr9 16979430 16979730 -125291714 - MER44D DNA MER2_type -10 599 7 344 296 53 8 chr9 16979746 16979878 -125291566 - L1ME LINE L1 -400 5762 5625 2002 151 0 3 chr9 16980956 16981261 -125290183 - AluJb SINE Alu -8 304 1 232 319 35 35 chr9 16981297 16981374 -125290070 - L1ME LINE L1 -335 5835 5756 2573 145 31 0 chr9 16981374 16981789 -125289655 - MSTC LTR MaLR 0 428 1 232 319 35 35 chr9 16981789 16981852 -125289592 - L1ME LINE L1 -413 5757 5695 244 239 220 37 chr9 16981896 16982114 -125289330 - L1ME LINE L1 -577 5585 5328 1033 195 5 15 chr9 16982214 16982414 -125289030 + AluJb SINE Alu 97 294 -18 2276 98 0 22 chr9 16982462 16982779 -125288665 - AluSx SINE Alu -2 310 1 873 150 0 0 chr9 16982976 16983116 -125288328 + FLAM_C SINE Alu 1 140 -3 21 57 0 0 chr9 16983292 16983327 -125288117 + AT_rich Low_complexity Low_complexity 1 35 0 2224 115 0 13 chr9 16983328 16983640 -125287804 - AluSg SINE Alu -2 308 1 1045 84 0 56 chr9 16983641 16983784 -125287660 - AluSq/x SINE Alu -177 135 1 200 279 0 0 chr9 16984005 16984048 -125287396 + MIR SINE MIR 88 130 -78 2028 121 6 32 chr9 16984355 16984669 -125286775 - AluJo SINE Alu -6 306 1 790 147 60 106 chr9 16984769 16984987 -125286457 + Charlie4 DNA MER1_type 1 208 -1753 2252 113 0 0 chr9 16985009 16985301 -125286143 + AluSx SINE Alu 5 296 -16 297 0 0 0 chr9 16985333 16985366 -125286078 + (TG)n Simple_repeat Simple_repeat 2 34 0 1658 184 3 17 chr9 16985399 16985693 -125285751 - AluJo SINE Alu -22 290 1 471 271 110 34 chr9 16986815 16987163 -125284281 - LTR33A LTR ERVL -13 510 84 1791 155 40 0 chr9 16987434 16987613 -125283831 - AluJb SINE Alu -4 308 111 387 0 0 0 chr9 16987613 16987656 -125283788 + (TTA)n Simple_repeat Simple_repeat 2 44 0 1791 155 40 0 chr9 16987656 16987772 -125283672 - AluJb SINE Alu -201 111 1 23 0 0 0 chr9 16987922 16987945 -125283499 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr9 16988758 16988779 -125282665 + AT_rich Low_complexity Low_complexity 1 21 0 737 205 25 12 chr9 16988836 16989047 -125282397 - L1ME3A LINE L1 -160 6002 5774 22201 54 2 2 chr9 16989319 16992959 -125278485 - L1PA5 LINE L1 -7 6147 2508 43473 45 2 2 chr9 16993036 16998637 -125272807 + L1P1 LINE L1 1 5605 -550 323 344 40 20 chr9 16999692 16999843 -125271601 - MIR SINE MIR -56 206 53 302 248 10 69 chr9 17000036 17000137 -125271307 - MIR SINE MIR -167 95 1 1732 122 37 1 chr9 17000347 17000802 -125270642 + L1P4 LINE L1 5026 5492 -669 2521 56 0 0 chr9 17000802 17001104 -125270340 + AluY SINE Alu 1 302 -9 1159 154 27 23 chr9 17001106 17001366 -125270078 + L1ME4a LINE L1 4119 4379 -1767 778 146 0 0 chr9 17001367 17001497 -125269947 + AluSc SINE Alu 180 309 0 1548 50 0 0 chr9 17001843 17002023 -125269421 + AluY SINE Alu 121 300 -11 901 126 0 0 chr9 17002024 17002159 -125269285 - L1MA4 LINE L1 -384 5916 5782 646 196 0 0 chr9 17002203 17002315 -125269129 - FLAM_A SINE Alu -10 132 21 1094 134 6 0 chr9 17002332 17002504 -125268940 - L1MA4 LINE L1 -518 5785 5613 2155 111 3 3 chr9 17002504 17002828 -125268616 - pTR5 LTR ERV1 -2049 389 66 406 188 30 20 chr9 17002828 17002929 -125268515 - LTR30 LTR ERV1 -80 642 541 800 129 184 12 chr9 17002930 17003093 -125268351 - pTR5 LTR ERV1 -417 2021 1831 2160 105 0 10 chr9 17003381 17003685 -125267759 - AluY SINE Alu -10 301 1 1449 211 66 34 chr9 17004392 17004861 -125266583 + HAL1 LINE L1 1069 1552 -955 1351 206 3 41 chr9 17005037 17005092 -125266352 + L1ME4a LINE L1 4614 4670 -1476 2140 131 0 0 chr9 17005092 17005382 -125266062 + AluSx SINE Alu 1 290 -22 1351 206 3 41 chr9 17005382 17005670 -125265774 + L1ME4a LINE L1 4670 4944 -1202 278 148 0 0 chr9 17005687 17005741 -125265703 + Alu SINE Alu 247 300 -1 691 240 37 28 chr9 17005741 17005958 -125265486 + L1MB8 LINE L1 5960 6178 0 692 283 109 31 chr9 17006385 17007038 -125264406 + L1ME4a LINE L1 5215 5942 -179 25 51 0 0 chr9 17007152 17007191 -125264253 + AT_rich Low_complexity Low_complexity 1 39 0 243 88 0 0 chr9 17007210 17007244 -125264200 + (TA)n Simple_repeat Simple_repeat 1 34 0 1679 181 17 3 chr9 17007350 17007638 -125263806 - AluJb SINE Alu -20 292 1 2129 120 0 7 chr9 17007758 17008070 -125263374 + AluSx SINE Alu 1 312 0 9707 128 20 4 chr9 17008220 17009549 -125261895 + L1M1 LINE L1 1205 2562 -5003 276 30 0 0 chr9 17009549 17009582 -125261862 + (GA)n Simple_repeat Simple_repeat 1 33 0 9707 128 20 4 chr9 17009582 17009716 -125261728 + L1M1 LINE L1 2562 2692 -4873 379 365 76 0 chr9 17010476 17010621 -125260823 + L2 LINE L2 3117 3272 0 22 0 0 0 chr9 17010690 17010712 -125260732 + AT_rich Low_complexity Low_complexity 1 22 0 927 59 0 0 chr9 17010833 17010952 -125260492 - L1PA5 LINE L1 -7 6147 6029 430 303 197 67 chr9 17011053 17011591 -125259853 + L2 LINE L2 1706 2313 -1001 234 246 18 0 chr9 17011599 17011656 -125259788 - L2 LINE L2 0 3272 3215 196 289 42 127 chr9 17011806 17011881 -125259563 + L2 LINE L2 2424 2504 -810 234 91 0 0 chr9 17011881 17011914 -125259530 + (CAATC)n Simple_repeat Simple_repeat 3 35 0 196 289 42 127 chr9 17011914 17012098 -125259346 + L2 LINE L2 2504 2661 -653 707 211 40 7 chr9 17012141 17012293 -125259151 + MIR SINE MIR 99 255 -7 21 0 0 0 chr9 17013133 17013154 -125258290 + AT_rich Low_complexity Low_complexity 1 21 0 32 26 0 0 chr9 17014032 17014071 -125257373 + AT_rich Low_complexity Low_complexity 1 39 0 1084 316 66 9 chr9 17014245 17014698 -125256746 + LTR33 LTR ERVL 23 501 -20 1744 124 25 0 chr9 17014815 17015089 -125256355 - Tigger1 DNA MER2_type -60 2358 2078 1026 158 37 23 chr9 17015123 17015338 -125256106 - L1MA4A LINE L1 -16 6287 6070 30 0 0 0 chr9 17015584 17015614 -125255830 + AT_rich Low_complexity Low_complexity 1 30 0 599 220 0 0 chr9 17018619 17018728 -125252716 + FLAM_A SINE Alu 14 122 -20 271 269 0 0 chr9 17019255 17019322 -125252122 + L2 LINE L2 2634 2700 -614 1240 156 60 39 chr9 17019330 17019457 -125251987 + L1MA9 LINE L1 6021 6144 -168 270 0 0 0 chr9 17019457 17019487 -125251957 + (CA)n Simple_repeat Simple_repeat 2 31 0 1240 156 60 39 chr9 17019487 17019641 -125251803 + L1MA9 LINE L1 6144 6308 -4 749 311 78 14 chr9 17019659 17020003 -125251441 + L2 LINE L2 2702 3063 -250 6686 44 0 0 chr9 17020012 17020825 -125250619 + L1PA5 LINE L1 5342 6154 0 631 216 110 5 chr9 17020831 17021112 -125250332 - L1M4 LINE L1 -699 5475 5173 1817 116 44 44 chr9 17021144 17021507 -125249937 - L1MA4A LINE L1 -5 6298 5936 2225 105 3 0 chr9 17021533 17021827 -125249617 - AluSx SINE Alu -17 295 1 773 140 0 91 chr9 17021832 17021975 -125249469 - FLAM_C SINE Alu -3 130 1 1733 96 16 8 chr9 17021975 17022225 -125249219 - L1MA4A LINE L1 -353 5950 5699 225 0 0 0 chr9 17022244 17022269 -125249175 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 22 35 0 0 chr9 17023634 17023663 -125247781 + AT_rich Low_complexity Low_complexity 1 29 0 1674 175 3 30 chr9 17024482 17024785 -125246659 + AluJb SINE Alu 3 297 -15 22 0 0 0 chr9 17025008 17025030 -125246414 + AT_rich Low_complexity Low_complexity 1 22 0 435 262 86 27 chr9 17025367 17025554 -125245890 + MIR SINE MIR 7 204 -58 902 85 0 0 chr9 17025555 17025673 -125245771 + AluY SINE Alu 187 304 -7 6274 216 33 34 chr9 17025698 17026448 -125244996 + L1MC4 LINE L1 2280 3029 -3117 773 173 0 8 chr9 17026448 17026575 -125244869 + FLAM_A SINE Alu 4 129 -4 6274 216 33 34 chr9 17026575 17026979 -125244465 + L1MC4 LINE L1 3029 3432 -2714 2222 115 3 0 chr9 17026979 17027283 -125244161 + AluSg SINE Alu 5 309 -1 6274 216 33 34 chr9 17027283 17027928 -125243516 + L1MC4 LINE L1 3432 4078 -2068 2158 100 0 33 chr9 17028030 17028331 -125243113 - AluSp SINE Alu -22 291 1 1613 180 10 23 chr9 17028511 17028811 -125242633 + AluJb SINE Alu 1 296 -16 2901 211 54 33 chr9 17028856 17030111 -125241333 + L1MC4 LINE L1 4690 5398 -748 3086 230 51 25 chr9 17030112 17031323 -125240121 + L1ME2 LINE L1 4842 6088 -76 1821 127 22 9 chr9 17031323 17031647 -125239797 + L1MA4A LINE L1 5968 6295 -8 3086 230 51 25 chr9 17031647 17031714 -125239730 + L1ME2 LINE L1 6088 6152 -12 30 0 0 0 chr9 17031900 17031930 -125239514 + AT_rich Low_complexity Low_complexity 1 30 0 29 0 0 0 chr9 17032473 17032502 -125238942 + AT_rich Low_complexity Low_complexity 1 29 0 25 65 0 0 chr9 17033086 17033132 -125238312 + AT_rich Low_complexity Low_complexity 1 46 0 351 273 76 58 chr9 17034936 17035108 -125236336 + MIR3 SINE MIR 33 207 -1 277 335 42 108 chr9 17036795 17036835 -125234609 - MIR SINE MIR -96 166 125 2340 103 0 0 chr9 17036835 17037136 -125234308 + AluSx SINE Alu 1 301 -11 277 335 42 108 chr9 17037136 17037262 -125234182 - MIR SINE MIR -137 125 11 6507 143 20 2 chr9 17038156 17039147 -125232297 - L1M1 LINE L1 -6541 1024 16 2132 165 58 5 chr9 17039150 17039526 -125231918 + MSTD LTR MaLR 1 396 0 421 167 24 0 chr9 17039894 17039978 -125231466 + L1MB2 LINE L1 5923 6008 -163 243 196 36 0 chr9 17039978 17040034 -125231410 + MLT2B2 LTR ERVL 1 58 -457 4603 268 41 37 chr9 17040814 17042318 -125229126 + ERVL LTR ERVL 1308 2817 -2947 2910 259 33 10 chr9 17042336 17043638 -125227806 + ERVL LTR ERVL 3238 4603 -1161 691 134 8 8 chr9 17043638 17043757 -125227687 + L1MB2 LINE L1 5890 6008 -163 1115 234 174 30 chr9 17043757 17044091 -125227353 + MLT2B1 LTR ERVL 1 382 -138 635 200 60 0 chr9 17044094 17044244 -125227200 + ERVL LTR ERVL 5219 5377 -387 431 192 13 0 chr9 17044256 17044334 -125227110 + Tigger5 DNA MER2_type 1 79 -2244 540 202 18 0 chr9 17044362 17044471 -125226973 + MLT2B1 LTR ERVL 512 622 -6 574 198 98 11 chr9 17044842 17045018 -125226426 - MER3 DNA MER1_type -86 123 12 417 233 41 0 chr9 17045018 17045164 -125226280 + L1MC5 LINE L1 7344 7495 -466 1988 128 7 3 chr9 17045169 17045457 -125225987 + AluSx SINE Alu 1 289 -23 2065 98 25 3 chr9 17045465 17045750 -125225694 + AluY SINE Alu 1 291 -20 213 179 0 0 chr9 17045750 17045781 -125225663 + GA-rich Low_complexity Low_complexity 6 39 0 24 77 0 0 chr9 17045900 17045952 -125225492 + AT_rich Low_complexity Low_complexity 1 52 0 500 197 88 27 chr9 17046068 17046215 -125225229 + L1MC5 LINE L1 7758 7913 -48 22 35 0 0 chr9 17046391 17046420 -125225024 + AT_rich Low_complexity Low_complexity 1 29 0 2100 128 0 0 chr9 17047922 17048204 -125223240 + AluSx SINE Alu 5 286 -26 1787 176 14 0 chr9 17049478 17049768 -125221676 + AluJb SINE Alu 1 294 -18 3437 27 2 0 chr9 17049872 17050276 -125221168 - L1PA3 LINE L1 -186 5969 5565 21 0 0 0 chr9 17050709 17050730 -125220714 + AT_rich Low_complexity Low_complexity 1 21 0 21 71 0 0 chr9 17050876 17050918 -125220526 + AT_rich Low_complexity Low_complexity 1 42 0 242 300 0 0 chr9 17052215 17052265 -125219179 + L2 LINE L2 3207 3256 -16 2125 126 10 0 chr9 17054099 17054393 -125217051 + AluSx SINE Alu 1 297 -15 241 284 23 0 chr9 17054496 17054584 -125216860 - L1MC4 LINE L1 -1339 6703 6614 * 249 277 0 0 chr9 17054505 17054588 -125216856 + L1MC4 LINE L1 6621 6703 -1339 505 85 0 0 chr9 17055292 17055374 -125216070 - L1PB1 LINE L1 -4 6147 6066 3216 179 26 17 chr9 17055777 17056474 -125214970 - L1MB7 LINE L1 -19 6165 5463 33684 71 3 3 chr9 17056484 17060895 -125210549 + L1P LINE L1 11 4420 -1726 578 134 67 45 chr9 17061553 17061687 -125209757 + L1MA5A LINE L1 6160 6296 -1 21 36 0 0 chr9 17061764 17061792 -125209652 + AT_rich Low_complexity Low_complexity 1 28 0 221 167 0 0 chr9 17061851 17061887 -125209557 + MIR3 SINE MIR 151 186 -22 1476 201 10 7 chr9 17064306 17064594 -125206850 + AluJo SINE Alu 9 297 -15 1723 191 0 3 chr9 17065935 17066218 -125205226 + AluJo SINE Alu 1 282 -30 479 93 0 13 chr9 17066219 17066294 -125205150 + (TA)n Simple_repeat Simple_repeat 1 74 0 183 80 0 0 chr9 17066314 17066339 -125205105 + (TG)n Simple_repeat Simple_repeat 2 26 0 229 300 0 12 chr9 17066356 17066436 -125205008 + (TA)n Simple_repeat Simple_repeat 1 79 0 668 247 104 91 chr9 17066855 17067611 -125203833 + HAL1 LINE L1 1104 1869 -638 632 170 0 0 chr9 17067618 17067724 -125203720 + L1PA6 LINE L1 5 110 -6351 * 30812 77 4 10 chr9 17067707 17072799 -125198645 + L1PA6 LINE L1 1408 6467 -2 296 242 32 32 chr9 17072820 17072915 -125198529 + HAL1 LINE L1 1865 1959 -548 926 188 0 0 chr9 17073033 17073193 -125198251 - AluJo/FRAM SINE Alu -8 304 145 412 192 0 5 chr9 17073196 17073286 -125198158 - AluJ/FLAM SINE Alu -230 72 1 246 219 355 7 chr9 17073288 17073443 -125198001 - L2 LINE L2 -8 3305 3097 762 233 95 38 chr9 17073474 17073791 -125197653 + HAL1 LINE L1 2167 2501 -6 204 40 0 0 chr9 17074169 17074194 -125197250 + (T)n Simple_repeat Simple_repeat 1 25 0 1615 143 0 7 chr9 17074541 17074820 -125196624 + L1MA4 LINE L1 6024 6300 0 22 0 0 0 chr9 17075308 17075330 -125196114 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr9 17075567 17075590 -125195854 + AT_rich Low_complexity Low_complexity 1 23 0 563 329 98 11 chr9 17075840 17076126 -125195318 - L3 LINE CR1 -10 1567 1257 446 270 25 45 chr9 17076377 17076486 -125194958 + MER113 DNA MER1_type? 16 121 -400 2245 108 0 0 chr9 17076486 17076783 -125194661 - AluSx SINE Alu -15 297 1 446 270 25 45 chr9 17076783 17076873 -125194571 + MER113 DNA MER1_type? 121 211 -310 283 256 250 0 chr9 17077083 17077247 -125194197 + MIR SINE MIR 58 262 0 1104 143 0 12 chr9 17077367 17077528 -125193916 - AluJo SINE Alu -75 237 79 25 0 0 0 chr9 17078326 17078351 -125193093 + AT_rich Low_complexity Low_complexity 1 25 0 1925 162 0 7 chr9 17078358 17078648 -125192796 - AluJo SINE Alu -24 288 1 309 185 15 0 chr9 17078805 17078870 -125192574 + L1MC5 LINE L1 7725 7790 -171 830 167 13 20 chr9 17078873 17079023 -125192421 + FRAM SINE Alu 18 166 -10 398 141 81 30 chr9 17079061 17079160 -125192284 + L1MC5 LINE L1 7808 7911 -50 2075 75 4 4 chr9 17079191 17079457 -125191987 + AluSp SINE Alu 44 309 -4 219 36 0 0 chr9 17079551 17079579 -125191865 + (TG)n Simple_repeat Simple_repeat 2 29 0 1792 180 0 0 chr9 17079598 17079893 -125191551 + AluJb SINE Alu 1 295 -17 1940 138 16 3 chr9 17079893 17080213 -125191231 - L1PB4 LINE L1 -19 6137 5814 2524 67 0 3 chr9 17080241 17080553 -125190891 + AluY SINE Alu 1 311 0 249 211 42 0 chr9 17080608 17080679 -125190765 + L1MC4a LINE L1 5875 5948 -1860 316 314 13 85 chr9 17080969 17081122 -125190322 + MIR SINE MIR 56 197 -65 2019 119 0 18 chr9 17081122 17081453 -125189991 - AluSx SINE Alu 0 326 1 305 318 27 9 chr9 17081460 17081570 -125189874 - L2 LINE L2 -5 3308 3197 2071 121 0 0 chr9 17081870 17082151 -125189293 - AluSx SINE Alu -30 282 2 4323 117 10 41 chr9 17082814 17082847 -125188597 + L1PA16 LINE L1 5468 5500 -666 2436 60 0 0 chr9 17082847 17083148 -125188296 - AluY SINE Alu -9 302 2 4323 117 10 41 chr9 17083148 17083826 -125187618 + L1PA16 LINE L1 5500 6157 -9 2474 176 72 9 chr9 17085234 17085695 -125185749 - MLT1D LTR MaLR -8 497 8 268 333 89 22 chr9 17085755 17085980 -125185464 + L2 LINE L2 2636 2875 -439 938 178 168 0 chr9 17086053 17086244 -125185200 - MER58A DNA MER1_type 0 224 2 196 365 144 0 chr9 17086437 17086541 -125184903 + L2 LINE L2 3177 3295 -18 287 197 127 0 chr9 17086623 17086694 -125184750 - Cheshire DNA MER1_type -2131 289 210 250 309 0 0 chr9 17086697 17086752 -125184692 - Cheshire DNA MER1_type -2364 56 2 3426 221 3 43 chr9 17087216 17087807 -125183637 - L1ME1 LINE L1 -5 6161 5639 2382 76 0 10 chr9 17087807 17088110 -125183334 - AluY SINE Alu -11 300 1 3426 221 3 43 chr9 17088110 17088605 -125182839 - L1ME1 LINE L1 -527 5639 5126 22 35 0 0 chr9 17088903 17088932 -125182512 + AT_rich Low_complexity Low_complexity 1 29 0 2662 42 12 0 chr9 17088956 17089287 -125182157 - L1PA4 LINE L1 0 6155 5821 1366 100 0 0 chr9 17089294 17089484 -125181960 - L1P LINE L1 -5956 190 1 262 161 62 12 chr9 17090148 17090229 -125181215 + L1MC5 LINE L1 7610 7694 -267 511 216 108 0 chr9 17090243 17090354 -125181090 + FLAM_C SINE Alu 1 123 -20 729 223 34 39 chr9 17090386 17090619 -125180825 + L1MC5 LINE L1 7694 7925 -36 1641 179 0 11 chr9 17090706 17090985 -125180459 + AluJb SINE Alu 1 276 -36 1478 186 7 62 chr9 17091331 17091407 -125180037 + L1M4 LINE L1 4684 4763 -1383 1452 179 52 34 chr9 17091407 17091698 -125179746 + AluSx SINE Alu 1 296 -16 1478 186 7 62 chr9 17091698 17092024 -125179420 + L1M4 LINE L1 4763 5064 -1082 1133 177 20 15 chr9 17092027 17092230 -125179214 + AluJb SINE Alu 87 290 -22 25 75 0 0 chr9 17092466 17092519 -125178925 + AT_rich Low_complexity Low_complexity 1 53 0 884 156 7 7 chr9 17093120 17093274 -125178170 - L1M4 LINE L1 -527 5638 5481 21 36 0 0 chr9 17094120 17094148 -125177296 + AT_rich Low_complexity Low_complexity 1 28 0 234 299 0 45 chr9 17094181 17094248 -125177196 - L2 LINE L2 -5 3267 3204 207 293 159 57 chr9 17094266 17094423 -125177021 - L2 LINE L2 -1 3312 3140 484 269 103 13 chr9 17094786 17094942 -125176502 + MIR SINE MIR 77 246 -16 2178 115 0 0 chr9 17095058 17095354 -125176090 - AluY SINE Alu -15 296 1 797 295 48 47 chr9 17095457 17095769 -125175675 - L1M4 LINE L1 -1092 5054 4744 1955 139 0 17 chr9 17095769 17096057 -125175387 - AluSx SINE Alu -29 283 1 797 295 48 47 chr9 17096057 17096430 -125175014 - L1M4 LINE L1 -1402 4744 4333 2423 170 19 19 chr9 17096430 17096907 -125174537 - L1MB5 LINE L1 -2 6172 5696 797 295 48 47 chr9 17096907 17097224 -125174220 - L1M4 LINE L1 -1813 4333 4018 638 216 15 22 chr9 17098120 17098254 -125173190 - FLAM_A SINE Alu 0 133 1 594 182 0 0 chr9 17098401 17098500 -125172944 - AluJ/FLAM SINE Alu -213 99 1 1850 162 3 19 chr9 17098575 17098889 -125172555 - AluJo SINE Alu 0 312 4 34026 91 24 43 chr9 17102055 17108327 -125163117 + L1PA6 LINE L1 11 6154 0 444 313 49 6 chr9 17109698 17109888 -125161556 + MIR SINE MIR 57 253 -9 795 212 40 54 chr9 17110061 17110283 -125161161 + MIR SINE MIR 44 262 0 2985 159 31 65 chr9 17110728 17111401 -125160043 + L1MB8 LINE L1 5524 6173 -5 323 235 0 35 chr9 17111446 17111531 -125159913 - MLT1L LTR MaLR -338 277 196 2401 90 10 67 chr9 17111793 17112103 -125159341 - L1PA16 LINE L1 0 6166 5840 1859 154 39 39 chr9 17112103 17112459 -125158985 + THE1B LTR MaLR 5 360 -4 11456 81 13 16 chr9 17112467 17114051 -125157393 + THE1B-int LTR MaLR 1 1580 0 2021 143 48 28 chr9 17114051 17114408 -125157036 + THE1B LTR MaLR 1 364 0 2401 90 10 67 chr9 17114408 17114476 -125156968 - L1PA16 LINE L1 -331 5835 5800 213 103 0 77 chr9 17114524 17114563 -125156881 + (TCCC)n Simple_repeat Simple_repeat 2 37 0 1586 199 85 16 chr9 17114772 17115149 -125156295 - L1MC4 LINE L1 -198 7844 7442 370 282 15 8 chr9 17115161 17115292 -125156152 - L1ME4a LINE L1 -218 5903 5772 519 236 115 7 chr9 17115835 17115983 -125155461 + MIR SINE MIR 1 164 -98 507 206 194 0 chr9 17116869 17117016 -125154428 + MER5A DNA MER1_type 4 183 -6 34 42 0 0 chr9 17117028 17117076 -125154368 + AT_rich Low_complexity Low_complexity 1 48 0 543 236 120 54 chr9 17118077 17118318 -125153126 - L1ME1 LINE L1 -7 6159 5903 1000 255 48 131 chr9 17118340 17119059 -125152385 - MER21B LTR ERV1 -193 670 35 1202 236 14 7 chr9 17119082 17119379 -125152065 - L1ME1 LINE L1 -251 5913 5615 3617 250 87 83 chr9 17119438 17121121 -125150323 - L2 LINE L2 -337 2977 1288 454 261 62 8 chr9 17121128 17121258 -125150186 - L2 LINE L2 -2139 1175 1039 2192 226 37 31 chr9 17121258 17121744 -125149700 + LTR40a LTR ERVL 1 489 -30 575 152 0 22 chr9 17121746 17121838 -125149606 - FRAM/FAM SINE Alu -93 83 1 1011 210 77 55 chr9 17121852 17122063 -125149381 + Charlie2 DNA MER1_type 2433 2657 -205 1783 173 0 31 chr9 17122063 17122381 -125149063 - AluJo SINE Alu -2 310 3 1011 210 77 55 chr9 17122381 17122535 -125148909 + Charlie2 DNA MER1_type 2657 2806 -56 2000 211 57 39 chr9 17122535 17123029 -125148415 - MLT1D LTR MaLR -2 503 1 598 182 0 0 chr9 17123214 17123324 -125148120 - AluSq/x SINE Alu -202 110 1 378 330 162 38 chr9 17123341 17123768 -125147676 + L2 LINE L2 2175 2654 -660 258 237 13 26 chr9 17124060 17124136 -125147308 + MIR SINE MIR 138 212 -50 906 208 27 88 chr9 17124654 17124948 -125146496 + Charlie4 DNA MER1_type 1 276 -1685 1009 248 92 75 chr9 17125151 17125791 -125145653 + Charlie4 DNA MER1_type 1293 1943 -18 21 36 0 0 chr9 17126291 17126319 -125145125 + AT_rich Low_complexity Low_complexity 1 28 0 238 295 18 27 chr9 17126339 17126451 -125144993 - L1MC/D LINE L1 -1999 5809 5699 192 167 48 0 chr9 17126487 17126529 -125144915 - L3 LINE CR1 -708 869 826 378 286 156 59 chr9 17126581 17127141 -125144303 - L1MC/D LINE L1 -747 5399 4889 1765 156 3 3 chr9 17127141 17127423 -125144021 - AluSx SINE Alu -30 282 1 378 286 156 59 chr9 17127423 17127692 -125143752 - L1MC/D LINE L1 -1257 4889 4648 354 322 33 22 chr9 17127906 17128089 -125143355 - L2 LINE L2 -484 2830 2646 328 233 9 26 chr9 17128256 17128372 -125143072 + (TTA)n Simple_repeat Simple_repeat 1 114 0 22 0 0 0 chr9 17128952 17128974 -125142470 + AT_rich Low_complexity Low_complexity 1 22 0 1999 147 24 72 chr9 17129256 17129672 -125141772 - MSTD LTR MaLR 0 396 1 265 281 176 41 chr9 17129888 17130183 -125141261 + L1MEd LINE L1 282 616 -5503 353 280 119 18 chr9 17130426 17130594 -125140850 + L1MEd LINE L1 918 1102 -5017 321 234 32 0 chr9 17130767 17130861 -125140583 - L1ME1 LINE L1 -8 6394 6298 * 323 167 0 135 chr9 17130858 17130954 -125140490 - L1PA15-16 LINE L1 -5466 1383 1301 * 884 145 0 150 chr9 17130947 17131174 -125140270 - L1PA15-16 LINE L1 -5436 1413 1221 * 1462 223 84 71 chr9 17131149 17131472 -125139972 - L1ME1 LINE L1 -520 6349 6032 1960 146 3 0 chr9 17131472 17131760 -125139684 - AluJb SINE Alu -23 289 1 1462 223 84 71 chr9 17131760 17132425 -125139019 - L1ME1 LINE L1 -837 6032 5326 422 234 124 9 chr9 17132458 17132668 -125138776 - L1ME1 LINE L1 -2789 3593 3356 769 73 0 73 chr9 17132668 17132805 -125138639 - L1PA8 LINE L1 0 6172 6046 793 294 35 0 chr9 17132842 17133039 -125138405 + MER58A DNA MER1_type 1 204 -20 1346 250 44 12 chr9 17133041 17133380 -125138064 - L1ME1 LINE L1 -4250 2313 1956 279 0 0 0 chr9 17133380 17133411 -125138033 + (TA)n Simple_repeat Simple_repeat 2 32 0 1346 250 44 12 chr9 17133411 17133503 -125137941 - L1ME1 LINE L1 -4607 1956 1868 347 300 58 16 chr9 17133508 17133698 -125137746 - L1ME1 LINE L1 -4756 1807 1610 9239 137 12 8 chr9 17133717 17136356 -125135088 - L1MA2 LINE L1 0 6304 3659 297 287 11 0 chr9 17136355 17136449 -125134995 - L1ME1 LINE L1 -4914 1470 1376 * 180 97 0 0 chr9 17136449 17136480 -125134964 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 13015 176 28 21 chr9 17136498 17142321 -125129123 - L1PA11 LINE L1 -8 6235 37 532 311 133 41 chr9 17142346 17143038 -125128406 - L2 LINE L2 -1884 1430 666 1788 177 19 40 chr9 17143038 17143411 -125128033 - MLT1A1 LTR MaLR 0 365 1 532 311 133 41 chr9 17143411 17143448 -125127996 - L2 LINE L2 -2648 666 634 551 140 43 0 chr9 17143531 17143624 -125127820 - MER3 DNA MER1_type -2 207 111 4697 94 12 154 chr9 17143624 17144582 -125126862 - LTR12 LTR ERV1 0 826 5 2291 197 26 30 chr9 17144598 17145203 -125126241 - pTR5 LTR ERV1 -1094 1344 742 572 232 9 0 chr9 17145203 17145315 -125126129 - MER3 DNA MER1_type -96 113 1 293 294 93 23 chr9 17147129 17147343 -125124101 + L1ME4a LINE L1 4086 4314 -1832 1634 161 47 0 chr9 17147347 17147626 -125123818 + AluSc SINE Alu 17 308 -1 14587 55 3 0 chr9 17147628 17149488 -125121956 - L1P LINE L1 -3429 2717 852 10775 41 7 2 chr9 17149490 17151572 -125119872 + L1PA5 LINE L1 4060 6148 -6 1487 130 8 25 chr9 17151828 17152067 -125119377 - MER46A DNA MER2_type -1 235 1 1167 175 22 36 chr9 17152325 17152548 -125118896 + AluJo SINE Alu 1 220 -92 275 133 0 0 chr9 17152548 17152593 -125118851 + FLAM_A SINE Alu 89 133 0 592 263 118 5 chr9 17152836 17153022 -125118422 - MIR SINE MIR -54 208 2 702 281 101 16 chr9 17153307 17153624 -125117820 + L1ME4a LINE L1 5384 5727 -394 267 203 0 0 chr9 17153651 17153715 -125117729 + GA-rich Low_complexity Low_complexity 3 66 0 1417 153 95 7 chr9 17153779 17154073 -125117371 + L1MA7 LINE L1 5972 6291 0 1314 182 56 94 chr9 17154123 17154591 -125116853 - LTR7 LTR ERV1 0 450 1 281 276 93 26 chr9 17154600 17154868 -125116576 + L1ME4a LINE L1 5835 6120 -1 362 225 0 0 chr9 17154985 17155065 -125116379 + MER116 DNA Mariner 1 80 0 308 274 112 28 chr9 17155214 17155393 -125116051 + MIR SINE MIR 57 250 -12 348 299 227 0 chr9 17155398 17155552 -125115892 + MIR SINE MIR 5 193 -69 287 277 53 0 chr9 17155601 17155695 -125115749 + MIR SINE MIR 161 259 -3 25 65 0 0 chr9 17156203 17156249 -125115195 + AT_rich Low_complexity Low_complexity 1 46 0 439 263 132 50 chr9 17157054 17157335 -125114109 + L2 LINE L2 3005 3308 -5 733 333 34 13 chr9 17159170 17159407 -125112037 + MIR SINE MIR 13 254 -8 2044 117 21 3 chr9 17159465 17159748 -125111696 + AluSx SINE Alu 1 288 -24 272 262 52 123 chr9 17160280 17160650 -125110794 + L1ME4a LINE L1 5708 6042 -79 793 189 0 0 chr9 17160650 17160777 -125110667 - FLAM_C SINE Alu -6 127 1 272 262 52 123 chr9 17160777 17160852 -125110592 + L1ME4a LINE L1 6042 6121 0 2196 112 0 0 chr9 17161518 17161812 -125109632 + AluSx SINE Alu 1 294 -18 2185 100 7 23 chr9 17162512 17162821 -125108623 - AluSx SINE Alu -8 304 1 2835 9 0 30 chr9 17162834 17163162 -125108282 - AluYb8 SINE Alu 0 318 1 24 0 0 0 chr9 17163656 17163680 -125107764 + AT_rich Low_complexity Low_complexity 1 24 0 897 28 9 0 chr9 17164891 17164997 -125106447 + U6 snRNA snRNA 1 107 0 28 29 0 0 chr9 17164997 17165032 -125106412 + AT_rich Low_complexity Low_complexity 1 35 0 23 33 0 0 chr9 17165530 17165560 -125105884 + AT_rich Low_complexity Low_complexity 1 30 0 1639 99 0 0 chr9 17165560 17165772 -125105672 + AluY SINE Alu 1 212 -99 183 80 0 0 chr9 17165803 17165828 -125105616 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 1603 55 5 0 chr9 17166220 17166420 -125105024 - L1P LINE L1 -1197 4949 4749 * 4133 30 0 0 chr9 17166418 17166918 -125104526 + L1P LINE L1 4254 4753 -1393 2499 150 9 21 chr9 17167464 17167897 -125103547 - L1MB2 LINE L1 -143 6264 5837 22 0 0 0 chr9 17167937 17167959 -125103485 + AT_rich Low_complexity Low_complexity 1 22 0 11703 31 15 0 chr9 17167959 17170151 -125101293 - L1PA3 LINE L1 0 6155 3942 10891 44 1 0 chr9 17170151 17171506 -125099938 + L1P LINE L1 1379 2735 -3411 9644 210 21 32 chr9 17171503 17172532 -125098912 - L1MB2 LINE L1 -567 5852 4813 * 2174 107 7 0 chr9 17172532 17172831 -125098613 - AluSp SINE Alu -12 301 1 9644 210 21 32 chr9 17172831 17174642 -125096802 - L1MB2 LINE L1 -1606 4813 3054 7468 126 42 16 chr9 17174654 17175889 -125095555 - L1MB2 LINE L1 -5100 1284 18 180 406 23 8 chr9 17176032 17176165 -125095279 - L2 LINE L2 -693 2621 2487 381 75 0 0 chr9 17178234 17178287 -125093157 + (TTCA)n Simple_repeat Simple_repeat 2 54 0 285 330 18 18 chr9 17178288 17178400 -125093044 - L2 LINE L2 -10 3262 3151 572 137 46 77 chr9 17178403 17178574 -125092870 + MER3 DNA MER1_type 1 209 0 423 0 0 0 chr9 17178652 17178699 -125092745 + (TTATA)n Simple_repeat Simple_repeat 1 47 0 332 299 89 32 chr9 17178709 17178866 -125092578 - L2 LINE L2 -215 3057 2892 449 276 9 19 chr9 17180416 17180521 -125090923 + L2 LINE L2 3210 3313 0 325 285 15 51 chr9 17181903 17182040 -125089404 - L1ME4a LINE L1 -5 6116 5985 1379 213 38 13 chr9 17182063 17182377 -125089067 + MER58B DNA MER1_type 20 341 0 303 298 85 28 chr9 17182387 17182528 -125088916 - L1ME4a LINE L1 -262 5859 5711 302 279 116 8 chr9 17182540 17182669 -125088775 - L1ME4a LINE L1 -484 5637 5495 210 191 0 0 chr9 17183027 17183074 -125088370 + (TA)n Simple_repeat Simple_repeat 1 47 0 1938 53 16 0 chr9 17183229 17183475 -125087969 + L1PA4 LINE L1 5905 6154 -1 641 312 85 16 chr9 17183517 17183834 -125087610 - L1MC/D LINE L1 -2096 5712 5374 1431 249 57 23 chr9 17183883 17184336 -125087108 + MLT1J LTR MaLR 1 503 -8 2122 107 0 7 chr9 17184908 17185199 -125086245 - AluSq SINE Alu -24 289 1 666 298 54 16 chr9 17185541 17185783 -125085661 + MIR SINE MIR 12 262 0 629 294 46 16 chr9 17185846 17186040 -125085404 - MIR SINE MIR -43 219 20 233 319 163 31 chr9 17186149 17186437 -125085007 - L2 LINE L2 0 3313 2988 239 279 0 0 chr9 17186577 17186638 -125084806 - MLT1H LTR MaLR -488 61 1 209 205 0 60 chr9 17187032 17187149 -125084295 + (TATATG)n Simple_repeat Simple_repeat 2 111 0 234 276 270 33 chr9 17187733 17187885 -125083559 - MIR3 SINE MIR 0 208 21 2093 100 30 23 chr9 17188685 17188984 -125082460 - AluSx SINE Alu -11 301 1 885 124 78 60 chr9 17190954 17191171 -125080273 + L1PA16 LINE L1 5944 6164 -2 180 179 137 128 chr9 17192996 17193113 -125078331 - L2 LINE L2 -1313 2001 1884 789 161 0 0 chr9 17195087 17195211 -125076233 - FLAM_A SINE Alu -6 127 4 266 271 115 60 chr9 17195263 17195481 -125075963 - MIR SINE MIR -26 236 7 21 0 0 0 chr9 17195519 17195540 -125075904 + AT_rich Low_complexity Low_complexity 1 21 0 1216 176 33 61 chr9 17195915 17196363 -125075081 + MLT1D LTR MaLR 1 505 0 39 38 0 0 chr9 17196791 17196844 -125074600 + AT_rich Low_complexity Low_complexity 1 53 0 180 250 0 42 chr9 17197888 17197936 -125073508 + L3b LINE CR1 1362 1407 -176 1783 199 31 16 chr9 17198862 17199315 -125072129 - L1MB7 LINE L1 0 6184 5725 2661 221 31 17 chr9 17199315 17200085 -125071359 - L1M4 LINE L1 -1872 4274 3491 357 55 0 0 chr9 17200096 17200151 -125071293 - L1MB3 LINE L1 -2 6181 6127 1164 219 55 77 chr9 17200921 17200984 -125070460 + MLT1A2 LTR MaLR 1 64 -310 1806 116 116 33 chr9 17200984 17201320 -125070124 - THE1B LTR MaLR 0 364 1 1164 219 55 77 chr9 17201320 17201635 -125069809 + MLT1A2 LTR MaLR 64 371 -3 458 261 98 20 chr9 17202450 17202603 -125068841 + MIR SINE MIR 71 235 -27 270 0 0 0 chr9 17203626 17203656 -125067788 + (TG)n Simple_repeat Simple_repeat 1 30 0 450 0 0 0 chr9 17203959 17204009 -125067435 + (TG)n Simple_repeat Simple_repeat 2 51 0 228 244 0 0 chr9 17204636 17204681 -125066763 + (TATG)n Simple_repeat Simple_repeat 3 47 0 287 307 161 11 chr9 17204684 17204958 -125066486 + L1ME4a LINE L1 5583 5897 -224 300 214 182 13 chr9 17205174 17205333 -125066111 + L1ME4a LINE L1 5935 6120 -1 384 292 125 0 chr9 17205678 17205822 -125065622 - MIR SINE MIR -35 227 66 525 298 73 49 chr9 17207093 17207493 -125063951 + L1MC/D LINE L1 4877 5289 -857 1032 115 13 6 chr9 17207493 17207650 -125063794 + L1PA15 LINE L1 6006 6163 -2 265 235 86 10 chr9 17207718 17207842 -125063602 + L1MC/D LINE L1 5652 5783 -576 4550 107 7 16 chr9 17207910 17208646 -125062798 - Tigger4(Zombi) DNA MER2_type 0 2731 2003 39580 63 4 4 chr9 17208659 17214800 -125056644 + L1PA5 LINE L1 11 6145 -9 12331 120 18 20 chr9 17214800 17216822 -125054622 - Tigger4(Zombi) DNA MER2_type -710 2021 4 29 0 0 0 chr9 17217003 17217032 -125054412 + AT_rich Low_complexity Low_complexity 1 29 0 703 316 37 39 chr9 17217207 17217698 -125053746 - LTR16B LTR ERVL 0 464 3 780 307 69 41 chr9 17217703 17218811 -125052633 - ERVL LTR ERVL -18 5325 4001 312 322 0 0 chr9 17218813 17218900 -125052544 - ERVL LTR ERVL -1477 4287 4201 971 206 113 0 chr9 17219240 17219444 -125052000 + AluJo SINE Alu 81 307 -5 627 209 12 6 chr9 17219447 17219619 -125051825 + GA-rich Low_complexity Low_complexity 4 176 0 186 43 0 0 chr9 17219626 17219649 -125051795 + (GGGA)n Simple_repeat Simple_repeat 4 26 0 306 205 90 41 chr9 17220693 17220815 -125050629 - L2 LINE L2 -1899 1415 1288 204 40 0 0 chr9 17221604 17221629 -125049815 + (TG)n Simple_repeat Simple_repeat 2 26 0 6353 130 54 31 chr9 17221764 17222040 -125049404 + Tigger3b DNA MER2_type 1 269 -2759 1839 154 37 3 chr9 17222040 17222339 -125049105 - AluJo SINE Alu -3 309 1 6353 130 54 31 chr9 17222339 17223264 -125048180 + Tigger3b DNA MER2_type 269 1230 -1 589 206 56 56 chr9 17223380 17223540 -125047904 + MIR3 SINE MIR 48 207 -1 3915 155 44 72 chr9 17225219 17225715 -125045729 - L1MB8 LINE L1 -9 6169 5661 1251 165 91 77 chr9 17225715 17226054 -125045390 - MER2 DNA MER2_type 0 344 1 3915 155 44 72 chr9 17226054 17226157 -125045287 - L1MB8 LINE L1 -517 5661 5557 1519 134 0 9 chr9 17226157 17226374 -125045070 - AluSx SINE Alu -97 215 1 3915 155 44 72 chr9 17226374 17226643 -125044801 - L1MB8 LINE L1 -621 5557 5282 7419 39 1 0 chr9 17226643 17228117 -125043327 - L1PA4 LINE L1 0 6155 4681 3915 155 44 72 chr9 17228117 17228576 -125042868 - L1MB8 LINE L1 -896 5282 4867 42 20 0 0 chr9 17229238 17229287 -125042157 + AT_rich Low_complexity Low_complexity 1 49 0 180 303 0 30 chr9 17230266 17230332 -125041112 + L2 LINE L2 3245 3308 -5 275 318 133 7 chr9 17231875 17232026 -125039418 - L2 LINE L2 0 3272 3103 262 309 159 45 chr9 17232445 17233025 -125038419 - HAL1 LINE L1 -1032 1475 830 9879 120 52 17 chr9 17233854 17235245 -125036199 - Tigger1 DNA MER2_type 0 2418 955 685 75 0 0 chr9 17235245 17235338 -125036106 + L1PA5 LINE L1 6058 6150 -4 9879 120 52 17 chr9 17235338 17235629 -125035815 - Tigger1 DNA MER2_type -1463 955 676 3374 145 42 0 chr9 17235827 17236421 -125035023 - L1MB3 LINE L1 -7 6176 5558 214 241 0 19 chr9 17236588 17236642 -125034802 + L2 LINE L2 3219 3271 -1 27 62 0 0 chr9 17237326 17237374 -125034070 + AT_rich Low_complexity Low_complexity 1 48 0 409 295 63 8 chr9 17237600 17237854 -125033590 - L1ME LINE L1 -341 5780 5513 202 343 57 0 chr9 17238835 17238905 -125032539 + MER91C DNA MER1_type 31 104 -36 202 200 0 0 chr9 17239774 17239814 -125031630 + GA-rich Low_complexity Low_complexity 1 40 0 421 200 0 90 chr9 17240192 17240276 -125031168 - Tigger7 DNA MER2_type -1 2490 2415 1771 146 79 3 chr9 17240276 17240606 -125030838 + MER46B DNA MER2_type 3 232 -4 421 200 0 90 chr9 17240606 17240621 -125030823 - Tigger7 DNA MER2_type -76 2415 2400 * 2777 193 31 14 chr9 17240620 17241132 -125030312 - Tigger7 DNA MER2_type -212 521 1 2207 105 0 7 chr9 17241304 17241598 -125029846 - AluSc SINE Alu -17 292 1 430 300 122 22 chr9 17241707 17241937 -125029507 + MIR SINE MIR 9 261 -1 735 300 32 8 chr9 17241963 17242210 -125029234 + MLT1I LTR MaLR 157 409 0 490 120 13 0 chr9 17243310 17243385 -125028059 - AluSg/x SINE Alu -16 294 219 2311 168 98 13 chr9 17244061 17244508 -125026936 + MLT1D LTR MaLR 21 505 0 279 224 35 0 chr9 17245102 17245160 -125026284 + MER81 DNA DNA 3 62 -52 241 215 21 108 chr9 17245173 17245206 -125026238 - MER81 DNA DNA -29 85 51 3273 183 17 19 chr9 17245206 17245372 -125026072 + L1MB5 LINE L1 5528 5693 -481 1938 123 0 57 chr9 17245372 17245697 -125025747 + AluSx SINE Alu 1 308 0 3273 183 17 19 chr9 17245697 17246170 -125025274 + L1MB5 LINE L1 5693 6167 -7 241 215 21 108 chr9 17246170 17246229 -125025215 - MER81 DNA DNA -63 51 1 21 0 0 0 chr9 17247673 17247694 -125023750 + AT_rich Low_complexity Low_complexity 1 21 0 191 309 191 0 chr9 17248223 17248317 -125023127 - L2 LINE L2 -229 3043 2932 350 204 75 0 chr9 17248706 17248799 -125022645 - MER53 DNA DNA -89 100 1 1242 239 145 12 chr9 17248859 17249265 -125022179 + LTR16B LTR ERVL 1 460 -4 508 263 65 5 chr9 17249597 17249783 -125021661 + MER117 DNA MER1_type 1 197 0 1770 174 37 29 chr9 17250083 17250434 -125021010 - MLT1A1 LTR MaLR -11 354 1 990 181 0 0 chr9 17252837 17252997 -125018447 - FRAM SINE Alu -19 157 1 3754 102 13 17 chr9 17253444 17253974 -125017470 + MER1A DNA MER1_type 2 529 0 207 196 43 0 chr9 17255983 17256029 -125015415 - L2 LINE L2 -9 3304 3257 1311 277 58 70 chr9 17256541 17256575 -125014869 + L1MEd LINE L1 804 837 -5693 2437 81 0 0 chr9 17256575 17256883 -125014561 + AluY SINE Alu 1 308 -3 1311 277 58 70 chr9 17256883 17257041 -125014403 + L1MEd LINE L1 837 995 -5535 2834 106 84 4 chr9 17257041 17257505 -125013939 + L1MA5 LINE L1 5799 6299 -1 1311 277 58 70 chr9 17257505 17258186 -125013258 + L1MEd LINE L1 995 1668 -4862 257 286 30 38 chr9 17258278 17258411 -125013033 + HAL1 LINE L1 1483 1614 -893 240 270 125 13 chr9 17258838 17258990 -125012454 + L1MEd LINE L1 2436 2604 -3936 250 250 0 0 chr9 17259029 17259097 -125012347 + A-rich Low_complexity Low_complexity 1 68 0 317 287 18 61 chr9 17259893 17260057 -125011387 - MLT1J LTR MaLR -280 231 75 258 138 17 52 chr9 17260188 17260246 -125011198 - PABL_B-int LTR ERV1 -4929 2193 2138 204 277 60 24 chr9 17262261 17262344 -125009100 - MIR SINE MIR -65 143 58 314 278 42 35 chr9 17262682 17262826 -125008618 + MIR SINE MIR 87 231 -31 183 288 17 0 chr9 17262798 17262857 -125008587 + L2 LINE L2 3251 3310 -3 * 23 0 0 0 chr9 17263471 17263494 -125007950 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr9 17264735 17264760 -125006684 + AT_rich Low_complexity Low_complexity 1 25 0 805 208 17 0 chr9 17265366 17265544 -125005900 - LTR16C LTR ERVL -2 489 309 978 195 13 66 chr9 17265556 17265782 -125005662 - MER20 DNA MER1_type -3 216 3 262 250 244 0 chr9 17266157 17266325 -125005119 - MIR SINE MIR -6 256 48 576 315 121 47 chr9 17266681 17266735 -125004709 + L2 LINE L2 1914 1963 -1351 2379 94 39 36 chr9 17266735 17267098 -125004346 + THE1B LTR MaLR 1 364 0 576 315 121 47 chr9 17267098 17267728 -125003716 + L2 LINE L2 1963 2649 -665 311 255 201 27 chr9 17267917 17268066 -125003378 + MIR SINE MIR 88 262 0 310 291 0 64 chr9 17268756 17268866 -125002578 + MIR SINE MIR 12 114 -148 534 163 116 47 chr9 17268929 17269058 -125002386 + MIR SINE MIR 104 241 -21 12104 142 24 24 chr9 17269131 17270100 -125001344 + Ricksha_c DNA DNA 1 969 -2285 2185 124 7 0 chr9 17270100 17270399 -125001045 - AluSx SINE Alu -11 301 1 12104 142 24 24 chr9 17270399 17271437 -125000007 + Ricksha_c DNA DNA 968 2008 -38 404 280 80 11 chr9 17271689 17271864 -124999580 + LTR33 LTR ERVL 305 491 -30 194 245 113 0 chr9 17271873 17271926 -124999518 - MIR SINE MIR -201 61 3 2629 93 28 0 chr9 17271992 17272346 -124999098 - THE1B LTR MaLR 0 364 1 330 314 65 6 chr9 17273343 17273512 -124997932 - MIR3 SINE MIR -6 202 24 251 261 34 12 chr9 17273585 17273712 -124997732 + MIR SINE MIR 2 130 -78 497 209 219 71 chr9 17275177 17275598 -124995846 - L2 LINE L2 -655 2659 2177 361 279 117 41 chr9 17276175 17276465 -124994979 + L1ME4a LINE L1 5793 6104 -17 1048 201 5 29 chr9 17276469 17276678 -124994766 + MER3 DNA MER1_type 1 204 -5 2076 129 0 10 chr9 17276683 17277000 -124994444 - AluSx SINE Alu 0 312 1 200 263 62 38 chr9 17277397 17277477 -124993967 - MIR SINE MIR -96 166 85 233 70 70 18 chr9 17277646 17277703 -124993741 + T-rich Low_complexity Low_complexity 2 61 0 180 0 0 0 chr9 17278265 17278285 -124993159 + (TAA)n Simple_repeat Simple_repeat 2 21 0 189 204 61 20 chr9 17279489 17279538 -124991906 - MIR SINE MIR -100 108 58 2950 16 0 0 chr9 17279708 17280026 -124991418 - AluYb8 SINE Alu 0 318 1 314 320 49 0 chr9 17281287 17281409 -124990035 + MIR SINE MIR 16 143 -65 331 210 62 0 chr9 17281491 17281572 -124989872 + MIR3 SINE MIR 118 203 -5 21 36 0 0 chr9 17281695 17281723 -124989721 + AT_rich Low_complexity Low_complexity 1 28 0 642 244 23 6 chr9 17281854 17282026 -124989418 - MIR SINE MIR 0 262 88 441 200 0 0 chr9 17282105 17282180 -124989264 + MER63 DNA MER1_type 677 751 -85 197 32 0 32 chr9 17282386 17282417 -124989027 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2093 142 3 3 chr9 17282456 17282786 -124988658 + L1PA15 LINE L1 5836 6165 0 252 100 0 0 chr9 17282808 17282848 -124988596 + (TTCA)n Simple_repeat Simple_repeat 2 41 0 205 308 131 0 chr9 17283201 17283308 -124988136 + L2 LINE L2 3193 3313 0 313 294 0 11 chr9 17284002 17284094 -124987350 - MIR SINE MIR -61 147 57 261 241 314 15 chr9 17285923 17286012 -124985432 + MIR SINE MIR 47 108 -154 323 44 22 0 chr9 17286012 17286057 -124985387 + (TG)n Simple_repeat Simple_repeat 1 46 0 261 241 314 15 chr9 17286057 17286104 -124985340 + MIR SINE MIR 108 224 -38 8044 14 0 0 chr9 17286673 17288163 -124983281 - L1PA2 LINE L1 0 6155 4666 4242 23 0 0 chr9 17288165 17288650 -124982794 + L1P LINE L1 4136 4620 -1526 511 280 156 19 chr9 17288705 17288916 -124982528 + MIR SINE MIR 2 241 -21 213 231 0 0 chr9 17289617 17289656 -124981788 + (TG)n Simple_repeat Simple_repeat 1 39 0 201 74 0 0 chr9 17290205 17290232 -124981212 + (TCTG)n Simple_repeat Simple_repeat 1 27 0 1046 254 68 34 chr9 17291145 17291499 -124979945 + MLT1K LTR MaLR 190 555 -33 202 157 0 78 chr9 17293195 17293246 -124978198 + MIR SINE MIR 74 121 -87 943 259 136 93 chr9 17293571 17294612 -124976832 - HAL1 LINE L1 -1420 1087 2 394 368 108 19 chr9 17294686 17295163 -124976281 - L2 LINE L2 -49 3223 2702 505 240 226 19 chr9 17295973 17296056 -124975388 - MER112 DNA MER1_type -1 259 194 447 68 0 0 chr9 17296056 17296115 -124975329 + (CATAG)n Simple_repeat Simple_repeat 2 60 0 505 240 226 19 chr9 17296115 17296239 -124975205 - MER112 DNA MER1_type -66 194 9 324 264 18 80 chr9 17297554 17297717 -124973727 + MLT1H LTR MaLR 23 175 -374 1314 152 134 11 chr9 17298119 17298268 -124973176 + L1MA9 LINE L1 6003 6132 -180 408 20 0 0 chr9 17298268 17298317 -124973127 + (CA)n Simple_repeat Simple_repeat 2 50 0 1314 152 134 11 chr9 17298317 17298443 -124973001 + L1MA9 LINE L1 6132 6312 0 1879 166 44 121 chr9 17299461 17299966 -124971478 + MLT1C LTR MaLR 1 466 -1 657 264 34 6 chr9 17300025 17300203 -124971241 - MIR SINE MIR -21 241 59 317 318 8 24 chr9 17300335 17300461 -124970983 - L3 LINE CR1 -400 1177 1054 247 280 13 13 chr9 17301382 17301457 -124969987 + MLT1L LTR MaLR 8 82 -533 242 303 44 61 chr9 17303412 17303612 -124967832 - MIR SINE MIR -46 216 17 301 345 0 0 chr9 17304932 17305019 -124966425 - MIR3 SINE MIR -3 205 119 328 289 89 37 chr9 17305048 17305183 -124966261 + MIR3 SINE MIR 3 144 -64 245 248 64 40 chr9 17305437 17305562 -124965882 - MLT2E LTR ERVL 0 628 501 324 217 48 24 chr9 17305772 17305855 -124965589 - MLT2E LTR ERVL -509 119 35 11563 94 42 25 chr9 17306111 17306524 -124964920 - L1P LINE L1 -2427 3719 3314 1941 118 0 0 chr9 17306524 17306778 -124964666 - AluSg SINE Alu -16 294 41 11563 94 42 25 chr9 17306778 17308173 -124963271 - L1P LINE L1 -2832 3314 1881 9993 82 10 0 chr9 17308171 17309516 -124961928 + L1PA7 LINE L1 3726 5084 -1062 * 2759 72 0 0 chr9 17309512 17309874 -124961570 - L1PA7 LINE L1 -915 5231 4870 * 6768 60 23 0 chr9 17309874 17310786 -124960658 + L1PA7 LINE L1 5219 6150 -4 200 244 77 64 chr9 17312489 17312567 -124958877 - MER5A DNA MER1_type -3 186 108 181 288 17 0 chr9 17314698 17314757 -124956687 - L2 LINE L2 -795 2519 2460 242 97 0 0 chr9 17315027 17315058 -124956386 - MSTA LTR MaLR -393 35 5 * 1849 126 160 9 chr9 17315047 17315397 -124956047 + MSTA LTR MaLR 26 428 0 298 194 10 10 chr9 17315666 17315769 -124955675 + CT-rich Low_complexity Low_complexity 1 103 0 321 300 18 9 chr9 17315885 17315995 -124955449 + MIR SINE MIR 21 131 -131 239 221 58 0 chr9 17316049 17316135 -124955309 - L1MC4 LINE L1 -1336 6706 6616 288 305 19 19 chr9 17316762 17316867 -124954577 + LTR33 LTR ERVL 107 211 -310 632 258 43 48 chr9 17316924 17317133 -124954311 + LTR33 LTR ERVL 314 521 0 304 286 43 43 chr9 17317644 17317784 -124953660 - MIR SINE MIR -74 188 49 332 282 38 23 chr9 17318338 17318469 -124952975 + MIR SINE MIR 51 183 -79 210 191 0 0 chr9 17318545 17318587 -124952857 + (CAT)n Simple_repeat Simple_repeat 3 44 0 201 222 67 56 chr9 17318689 17318779 -124952665 + MIR SINE MIR 61 151 -111 763 142 86 25 chr9 17321435 17321597 -124949847 - MER53 DNA DNA 0 189 18 2318 204 56 68 chr9 17321604 17322261 -124949183 + MLT1E1 LTR MaLR 6 654 0 183 162 0 0 chr9 17322701 17322738 -124948706 + G-rich Low_complexity Low_complexity 4 40 0 241 303 22 25 chr9 17323502 17323652 -124947792 + MIR SINE MIR 13 139 -69 399 130 22 22 chr9 17324827 17324919 -124946525 + (TCCA)n Simple_repeat Simple_repeat 1 92 0 442 293 34 14 chr9 17324957 17325104 -124946340 - L2 LINE L2 -5 3267 3118 435 147 0 0 chr9 17327221 17327289 -124944155 - L1MC4 LINE L1 0 8042 7975 353 139 42 14 chr9 17327289 17327361 -124944083 - MER106A DNA MER1_type 0 236 163 1073 148 13 0 chr9 17327370 17327525 -124943919 - FRAM SINE Alu -20 156 1 529 243 54 7 chr9 17327530 17327678 -124943766 - MER106A DNA MER1_type -80 156 2 321 212 0 0 chr9 17327682 17327748 -124943696 - L1MC4 LINE L1 -63 7979 7914 180 273 0 0 chr9 17327767 17327833 -124943611 + (CATATA)n Simple_repeat Simple_repeat 6 71 0 455 198 9 36 chr9 17327841 17327952 -124943492 - L1MC4 LINE L1 -128 7914 7807 292 276 40 0 chr9 17328901 17328977 -124942467 - MER2 DNA MER2_type 0 345 267 768 145 26 0 chr9 17328998 17329115 -124942329 + MSTB LTR MaLR 254 373 -53 1015 124 62 46 chr9 17329154 17329348 -124942096 - MER2 DNA MER2_type -134 211 15 2036 126 4 0 chr9 17329671 17329949 -124941495 + AluSx SINE Alu 5 283 -29 469 157 33 8 chr9 17329949 17330070 -124941374 + (TA)n Simple_repeat Simple_repeat 1 124 0 313 341 54 18 chr9 17330271 17330438 -124941006 - MIR3 SINE MIR -7 201 29 302 357 83 0 chr9 17331485 17331653 -124939791 - HERVL LTR ERVL -758 4896 4715 1021 141 0 0 chr9 17331767 17331916 -124939528 + FRAM SINE Alu 1 40 0 601 308 104 39 chr9 17331918 17332275 -124939169 - HERVL LTR ERVL -885 4600 4221 982 314 84 35 chr9 17332295 17332985 -124938459 - HERVL LTR ERVL -1710 4054 3331 1837 297 73 43 chr9 17333089 17334545 -124936899 + L1ME2 LINE L1 111 1611 -4785 2507 225 126 22 chr9 17334589 17335808 -124935636 + L1ME2 LINE L1 4876 6224 -9 385 361 79 1 chr9 17335828 17336041 -124935403 - HERVL LTR ERVL -2386 3268 3068 2328 141 20 0 chr9 17336043 17336391 -124935053 - THE1B LTR MaLR -2 362 8 2022 147 0 10 chr9 17336498 17336804 -124934640 + AluSx SINE Alu 1 303 -9 1515 197 17 27 chr9 17336823 17337123 -124934321 + AluJo SINE Alu 1 297 -15 1629 347 77 18 chr9 17337125 17338198 -124933246 - HERVL LTR ERVL -2738 3026 1890 891 212 5 5 chr9 17338202 17338386 -124933058 + MER5A DNA MER1_type 6 189 0 286 237 26 0 chr9 17338437 17338511 -124932933 - HERVL LTR ERVL -3666 1819 1743 298 278 67 22 chr9 17338995 17339085 -124932359 + MER101B LTR ERV1 1 94 -476 2167 122 68 6 chr9 17339102 17339455 -124931989 + THE1C LTR MaLR 1 375 0 1602 230 15 4 chr9 17339622 17339999 -124931445 + LTR51 LTR ERV1 228 838 -85 249 198 12 139 chr9 17342751 17342837 -124928607 - L2 LINE L2 0 3272 3198 183 300 0 0 chr9 17343052 17343102 -124928342 + L2 LINE L2 3137 3186 -86 271 176 39 0 chr9 17343172 17343223 -124928221 + MLT1L LTR MaLR 216 268 -347 292 336 26 0 chr9 17343261 17343377 -124928067 + MLT1L LTR MaLR 337 455 -160 232 231 0 22 chr9 17343461 17343552 -124927892 + CT-rich Low_complexity Low_complexity 5 93 0 33 43 0 0 chr9 17345283 17345330 -124926114 + AT_rich Low_complexity Low_complexity 1 47 0 335 204 119 68 chr9 17345517 17345693 -124925751 - L1MC4a LINE L1 -1963 5845 5661 417 269 151 8 chr9 17346728 17346847 -124924597 + MIR3 SINE MIR 20 155 -53 225 291 58 0 chr9 17346937 17347023 -124924421 - MIR SINE MIR -67 141 51 203 360 45 9 chr9 17347014 17347125 -124924319 + L2 LINE L2 2958 3072 -200 * 317 324 28 64 chr9 17347342 17347592 -124923852 + L2 LINE L2 2835 3075 -197 453 229 168 29 chr9 17347710 17347892 -124923552 - MLT1J LTR MaLR -40 575 289 245 250 94 0 chr9 17348137 17348201 -124923243 + MER5C DNA MER1_type 55 124 -200 973 214 107 85 chr9 17348859 17349261 -124922183 - MLT1C LTR MaLR -5 462 52 460 213 74 0 chr9 17349330 17349452 -124921992 - LTR16A LTR ERVL -9 441 311 266 270 0 27 chr9 17350780 17350854 -124920590 + CT-rich Low_complexity Low_complexity 5 76 0 187 370 83 22 chr9 17351586 17351767 -124919677 - MIR SINE MIR -70 192 1 633 296 40 26 chr9 17352823 17353055 -124918389 + MIR SINE MIR 23 261 -1 472 271 164 7 chr9 17353067 17353207 -124918237 - L2 LINE L2 -1 3271 3110 590 286 7 0 chr9 17353315 17353455 -124917989 + L2 LINE L2 3169 3309 -4 348 244 120 49 chr9 17353833 17354085 -124917359 - MLT1J1 LTR MaLR -191 259 1 462 272 104 63 chr9 17354444 17354779 -124916665 + MLT1J1 LTR MaLR 72 420 -26 2454 218 59 26 chr9 17354903 17355476 -124915968 + L1ME2 LINE L1 5526 6122 -42 2291 78 3 0 chr9 17355476 17355769 -124915675 + AluSp SINE Alu 1 294 -19 2454 218 59 26 chr9 17355769 17355805 -124915639 + L1ME2 LINE L1 6122 6155 -9 449 265 70 11 chr9 17357621 17357766 -124913678 + MIR SINE MIR 16 164 -58 559 216 0 0 chr9 17358035 17358137 -124913307 - LTR40a LTR ERVL -415 104 3 711 161 51 0 chr9 17358140 17358258 -124913186 - MER63 DNA MER1_type -86 750 1 270 153 0 0 chr9 17360128 17360187 -124911257 + CT-rich Low_complexity Low_complexity 1 59 0 553 219 182 21 chr9 17360791 17360978 -124910466 - MIR SINE MIR -26 236 20 414 0 0 0 chr9 17361662 17361708 -124909736 + (TG)n Simple_repeat Simple_repeat 2 47 0 246 389 8 8 chr9 17362076 17362202 -124909242 + MIR SINE MIR 22 147 -61 4735 141 31 7 chr9 17362206 17363021 -124908423 + L1MA8 LINE L1 5455 6288 -3 1977 155 63 39 chr9 17364089 17364504 -124906940 - MLT2D LTR ERVL -13 507 6 604 290 13 0 chr9 17364508 17364663 -124906781 - MIR SINE MIR -59 203 47 184 274 16 32 chr9 17366862 17366924 -124904520 - MIR3 SINE MIR -44 164 104 1846 155 0 19 chr9 17367223 17367532 -124903912 - AluJo SINE Alu -9 303 1 3027 188 42 20 chr9 17367618 17368573 -124902871 + L1M1 LINE L1 13 1100 -6465 5579 101 4 18 chr9 17368925 17369745 -124901699 - L1MA2 LINE L1 -6 6298 5491 874 293 216 5 chr9 17369747 17370258 -124901186 + L2 LINE L2 2703 3312 -1 855 264 90 41 chr9 17371605 17371992 -124899452 - MLT1I LTR MaLR -3 406 1 230 275 99 11 chr9 17372499 17372590 -124898854 + L3b LINE CR1 1363 1461 -122 559 292 71 6 chr9 17372601 17372769 -124898675 + MER5A DNA MER1_type 11 189 0 399 21 0 0 chr9 17375542 17375590 -124895854 + (TG)n Simple_repeat Simple_repeat 2 49 0 447 19 0 0 chr9 17376753 17376805 -124894639 + (TG)n Simple_repeat Simple_repeat 1 52 0 200 189 0 0 chr9 17377121 17377158 -124894286 + (CA)n Simple_repeat Simple_repeat 1 37 0 25 0 0 0 chr9 17377243 17377268 -124894176 + AT_rich Low_complexity Low_complexity 1 25 0 35 63 0 0 chr9 17378862 17378925 -124892519 + AT_rich Low_complexity Low_complexity 1 63 0 563 318 19 102 chr9 17379567 17379929 -124891515 + L2 LINE L2 2939 3270 -2 430 269 91 65 chr9 17380286 17380472 -124890972 - L2 LINE L2 -4 3309 3119 364 267 32 105 chr9 17380946 17381150 -124890294 - MIR SINE MIR -72 190 3 261 75 0 0 chr9 17381339 17381379 -124890065 + (CA)n Simple_repeat Simple_repeat 1 40 0 316 323 60 8 chr9 17382307 17382440 -124889004 - MIR SINE MIR -5 257 118 647 245 369 9 chr9 17382447 17382871 -124888573 - L2 LINE L2 0 3313 2740 602 277 100 13 chr9 17383022 17383253 -124888191 - MLT1J LTR MaLR -252 259 9 1405 284 20 54 chr9 17383259 17383819 -124887625 - L2 LINE L2 -573 2741 2201 1818 191 135 12 chr9 17384733 17385147 -124886297 + MLT1C LTR MaLR 1 465 -2 2764 132 21 7 chr9 17385608 17386032 -124885412 - MSTB1 LTR MaLR -2 430 1 596 236 110 0 chr9 17386482 17386673 -124884771 - MER102b DNA MER1_type -27 314 103 5687 149 38 33 chr9 17386673 17387844 -124883600 + L1MC2 LINE L1 5161 6326 -18 2266 96 0 0 chr9 17387845 17388146 -124883298 + AluSg SINE Alu 1 301 -9 283 208 123 85 chr9 17388148 17388278 -124883166 - MER102b DNA MER1_type -206 135 1 501 265 99 7 chr9 17388329 17388480 -124882964 - MIR3 SINE MIR -12 196 32 258 357 39 8 chr9 17389065 17389194 -124882250 - MIR SINE MIR -54 208 76 677 293 38 14 chr9 17389593 17389836 -124881608 - MIR SINE MIR -15 247 2 259 275 83 28 chr9 17389836 17389900 -124881544 - MIR SINE MIR -32 230 161 585 236 146 17 chr9 17389900 17390078 -124881366 + MIR SINE MIR 3 203 -59 387 185 0 25 chr9 17390088 17390169 -124881275 - MIR SINE MIR -113 149 71 230 167 67 67 chr9 17391367 17391427 -124880017 - MIR3 SINE MIR -22 186 127 201 352 0 11 chr9 17391596 17391684 -124879760 + GA-rich Low_complexity Low_complexity 4 90 0 750 279 4 51 chr9 17392749 17392986 -124878458 - MIR SINE MIR 0 262 37 302 270 130 0 chr9 17393079 17393179 -124878265 - MIR SINE MIR -109 153 41 180 286 20 0 chr9 17393216 17393265 -124878179 + MIR3 SINE MIR 133 182 -26 341 242 53 0 chr9 17394651 17394746 -124876698 - L1MA9 LINE L1 -602 5703 5604 * 498 147 0 21 chr9 17394732 17394815 -124876629 + L1MA9 LINE L1 5701 5783 -508 189 0 0 0 chr9 17394815 17394836 -124876608 + (TG)n Simple_repeat Simple_repeat 2 22 0 498 147 0 21 chr9 17394836 17394847 -124876597 + L1MA9 LINE L1 5783 5793 -498 243 154 36 18 chr9 17394847 17394957 -124876487 + (TA)n Simple_repeat Simple_repeat 1 112 0 2240 176 52 17 chr9 17394974 17395442 -124876002 + L1MA9 LINE L1 5783 6274 -38 723 245 187 30 chr9 17395588 17395919 -124875525 - MLT1K LTR MaLR -68 520 138 452 321 70 56 chr9 17396516 17397126 -124874318 - L1MDa LINE L1 -2799 3741 3123 252 299 36 21 chr9 17397417 17397611 -124873833 - L1MDa LINE L1 -3747 2793 2597 303 276 165 0 chr9 17397613 17397783 -124873661 - L1MDa LINE L1 -3923 2617 2420 454 329 56 48 chr9 17398653 17399157 -124872287 - HAL1 LINE L1 -1070 1437 930 2303 82 0 0 chr9 17399442 17399733 -124871711 - AluY SINE Alu -20 291 1 1859 143 40 24 chr9 17400449 17400777 -124870667 + MER44D DNA MER2_type 3 605 -4 298 154 0 19 chr9 17400837 17400889 -124870555 + MLT1L LTR MaLR 135 185 -430 296 277 21 64 chr9 17401009 17401103 -124870341 + MLT1L LTR MaLR 341 430 -185 372 94 0 0 chr9 17401546 17401599 -124869845 + (CTG)n Simple_repeat Simple_repeat 1 53 0 301 328 40 0 chr9 17401885 17402010 -124869434 - MIR SINE MIR -15 247 118 936 101 0 0 chr9 17402966 17403085 -124868359 - AluSq/x SINE Alu -193 119 1 254 191 0 15 chr9 17403644 17403712 -124867732 + GA-rich Low_complexity Low_complexity 2 68 0 212 95 71 0 chr9 17404808 17404850 -124866594 + (ATATG)n Simple_repeat Simple_repeat 5 49 0 340 319 55 12 chr9 17404865 17405028 -124866416 - MIR SINE MIR -45 217 48 2629 200 76 0 chr9 17405402 17405913 -124865531 - MLT1F1 LTR MaLR 0 567 18 1618 188 65 3 chr9 17405923 17406216 -124865228 - AluJo SINE Alu -1 311 1 446 279 31 0 chr9 17406474 17406603 -124864841 - MIR SINE MIR -4 258 126 241 295 25 82 chr9 17406646 17406768 -124864676 - L2 LINE L2 -166 3106 2992 9176 38 0 0 chr9 17407484 17409339 -124862105 - L1PA4 LINE L1 0 6155 4299 1251 110 31 0 chr9 17410361 17410552 -124860892 + L1PA8 LINE L1 5974 6170 -2 2088 137 3 0 chr9 17410780 17411086 -124860358 - AluJb SINE Alu -5 307 1 557 270 181 0 chr9 17411209 17411413 -124860031 - MIR SINE MIR -13 249 9 198 143 0 0 chr9 17411809 17411844 -124859600 + (TG)n Simple_repeat Simple_repeat 2 36 0 327 284 16 24 chr9 17412665 17412792 -124858652 + CT-rich Low_complexity Low_complexity 1 126 0 311 318 65 61 chr9 17414530 17414772 -124856672 - MIR SINE MIR -12 250 10 24 0 0 0 chr9 17414829 17414853 -124856591 + AT_rich Low_complexity Low_complexity 1 24 0 315 149 287 11 chr9 17415088 17415182 -124856262 + MER117 DNA MER1_type 46 165 -32 226 243 40 14 chr9 17415234 17415308 -124856136 - MIR3 SINE MIR -48 160 85 226 268 153 38 chr9 17415451 17415608 -124855836 + MIR SINE MIR 37 211 -51 207 0 0 0 chr9 17418021 17418044 -124853400 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 461 274 93 30 chr9 17418678 17418879 -124852565 - MIR SINE MIR -41 221 9 21 36 0 0 chr9 17419155 17419183 -124852261 + AT_rich Low_complexity Low_complexity 1 28 0 29 0 0 0 chr9 17419235 17419264 -124852180 + AT_rich Low_complexity Low_complexity 1 29 0 2469 82 3 0 chr9 17420056 17420359 -124851085 - AluY SINE Alu -7 304 1 268 161 54 0 chr9 17421427 17421483 -124849961 - MIR SINE MIR -64 144 86 262 320 8 16 chr9 17422084 17422206 -124849238 + MER103 DNA DNA 28 148 -18 314 214 112 31 chr9 17422675 17422773 -124848671 + MIR SINE MIR 36 141 -67 181 277 60 48 chr9 17424985 17425068 -124846376 + MIR SINE MIR 8 91 -171 1439 194 64 53 chr9 17426130 17426491 -124844953 - MLT1A1 LTR MaLR 0 365 1 195 42 0 0 chr9 17428379 17428403 -124843041 + (TTG)n Simple_repeat Simple_repeat 2 25 0 2033 130 0 11 chr9 17428403 17428711 -124842733 - AluSx SINE Alu 0 305 1 4359 269 72 44 chr9 17428994 17431746 -124839698 - L1ME3A LINE L1 -5 6165 3325 184 301 115 27 chr9 17432403 17432586 -124838858 - L2 LINE L2 -1226 2088 1890 233 291 149 29 chr9 17432691 17432932 -124838512 - L2 LINE L2 -2 3311 3042 647 275 77 13 chr9 17434472 17434705 -124836739 - MIR SINE MIR 0 262 15 180 0 0 0 chr9 17434789 17434809 -124836635 + (T)n Simple_repeat Simple_repeat 1 20 0 269 285 22 66 chr9 17436529 17436666 -124834778 - MLT1K LTR MaLR -2 586 456 185 340 28 0 chr9 17437004 17437110 -124834334 - L2 LINE L2 -28 3285 3177 294 29 0 0 chr9 17437473 17437508 -124833936 + (TG)n Simple_repeat Simple_repeat 2 36 0 198 189 0 0 chr9 17437725 17437762 -124833682 - L2 LINE L2 -8 3305 3269 180 0 0 0 chr9 17439441 17439461 -124831983 + (A)n Simple_repeat Simple_repeat 1 20 0 369 291 111 6 chr9 17439720 17439892 -124831552 - MIR SINE MIR -14 248 59 2451 186 32 18 chr9 17440069 17440251 -124831193 + L1MB1 LINE L1 5649 5827 -362 2451 89 10 0 chr9 17440251 17440555 -124830889 - AluSg SINE Alu -3 307 1 2451 186 32 18 chr9 17440555 17440868 -124830576 + L1MB1 LINE L1 5827 6151 -38 2073 113 4 0 chr9 17440889 17441163 -124830281 + AluSx SINE Alu 1 275 -37 215 30 0 30 chr9 17441167 17441200 -124830244 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 456 337 50 20 chr9 17441340 17441542 -124829902 - L3 LINE CR1 -2 1575 1368 1460 221 51 3 chr9 17442897 17443268 -124828176 - MER97a DNA MER1_type? 0 894 506 31908 102 18 7 chr9 17443296 17449700 -124821744 + L1PA7 LINE L1 4 6485 0 762 257 87 74 chr9 17449700 17450066 -124821378 - MER97a DNA MER1_type? -402 492 122 551 256 109 14 chr9 17451810 17452021 -124819423 - L2 LINE L2 -2 3311 3081 1816 169 0 10 chr9 17452474 17452775 -124818669 + AluJb SINE Alu 1 298 -14 483 286 58 6 chr9 17453026 17453197 -124818247 + MIR SINE MIR 12 191 -71 319 314 29 0 chr9 17453272 17453374 -124818070 + L1MC4 LINE L1 7791 7895 -147 421 329 44 40 chr9 17453462 17453760 -124817684 + L2 LINE L2 2181 2479 -835 4421 225 119 72 chr9 17453760 17455436 -124816008 + MER52A LTR ERV1 1 1755 0 507 306 71 24 chr9 17455440 17455981 -124815463 + L2 LINE L2 2481 3054 -218 385 193 0 68 chr9 17457986 17458074 -124813370 + L1MB4 LINE L1 6065 6146 -34 193 304 11 33 chr9 17458302 17458394 -124813050 + MIR3 SINE MIR 101 190 -18 475 177 50 141 chr9 17458403 17458601 -124812843 + MLT1J LTR MaLR 1 180 -331 2447 115 16 19 chr9 17459250 17459615 -124811829 + THE1B LTR MaLR 1 364 0 548 261 15 36 chr9 17460520 17460715 -124810729 + MIR SINE MIR 17 207 -55 487 263 96 14 chr9 17460717 17460926 -124810518 - LTR33A LTR ERVL -1 522 297 278 49 0 24 chr9 17461096 17461137 -124810307 + (CTG)n Simple_repeat Simple_repeat 3 42 0 190 369 0 0 chr9 17461417 17461482 -124809962 + MIR SINE MIR 68 132 -76 22 0 0 0 chr9 17463366 17463388 -124808056 + AT_rich Low_complexity Low_complexity 1 22 0 378 0 0 0 chr9 17464447 17464489 -124806955 + (CA)n Simple_repeat Simple_repeat 1 42 0 625 308 16 16 chr9 17464916 17465166 -124806278 + MIR SINE MIR 13 262 0 585 88 0 0 chr9 17465171 17465251 -124806193 + MADE1 DNA Mariner 1 80 0 201 339 107 8 chr9 17466032 17466153 -124805291 + MIR SINE MIR 17 149 -113 194 305 114 8 chr9 17467276 17467407 -124804037 + L2 LINE L2 3127 3271 -1 229 175 70 0 chr9 17468260 17468317 -124803127 + MLT1L LTR MaLR 220 280 -335 333 209 121 22 chr9 17468452 17468543 -124802901 + MLT1L LTR MaLR 511 610 -5 2515 174 30 4 chr9 17469074 17469545 -124801899 + L1MB7 LINE L1 5697 6179 -5 853 224 8 42 chr9 17469565 17469802 -124801642 + MIR SINE MIR 34 262 0 312 27 0 0 chr9 17470041 17470078 -124801366 + (CA)n Simple_repeat Simple_repeat 2 38 0 277 244 24 12 chr9 17470763 17470845 -124800599 - L2 LINE L2 -6 3307 3225 324 226 16 0 chr9 17471554 17471616 -124799828 + L1M3 LINE L1 5630 5692 -491 * 4440 146 31 33 chr9 17471614 17472423 -124799021 + L1MB3 LINE L1 5375 6181 -2 530 274 107 5 chr9 17474232 17474429 -124797015 - MIR SINE MIR -20 242 26 202 260 0 0 chr9 17474777 17474827 -124796617 + MIR SINE MIR 105 154 -108 353 248 36 99 chr9 17475211 17475414 -124796030 + LTR16A1 LTR ERVL 290 446 -11 201 264 64 106 chr9 17475449 17475809 -124795635 + L2 LINE L2 2253 2597 -717 451 230 92 0 chr9 17476733 17476867 -124794577 - MIR SINE MIR -58 204 61 180 152 0 0 chr9 17477171 17477204 -124794240 + L2 LINE L2 3276 3308 -5 313 275 79 32 chr9 17478002 17478191 -124793253 + L2 LINE L2 3116 3313 0 248 349 9 0 chr9 17478245 17478354 -124793090 - MIR SINE MIR -61 147 38 2045 174 17 50 chr9 17479383 17479786 -124791658 - MLT1B LTR MaLR 0 390 1 1614 157 102 41 chr9 17480530 17480873 -124790571 + MLT1A1 LTR MaLR 2 365 0 23 33 0 0 chr9 17481216 17481246 -124790198 + AT_rich Low_complexity Low_complexity 1 30 0 2022 151 0 7 chr9 17481424 17481729 -124789715 + AluJb SINE Alu 3 305 -7 287 340 50 0 chr9 17484144 17484244 -124787200 + MIR SINE MIR 19 123 -85 365 307 36 58 chr9 17484292 17484758 -124786686 + L2 LINE L2 1912 2367 -947 844 246 35 100 chr9 17484990 17485420 -124786024 - MLT1J LTR MaLR -6 505 104 313 266 0 13 chr9 17485470 17485549 -124785895 - MLT1L LTR MaLR -537 78 1 925 216 5 47 chr9 17486496 17486709 -124784735 + MER63A DNA MER1_type 1 204 -6 242 352 11 0 chr9 17487227 17487318 -124784126 + L2 LINE L2 3179 3270 -2 22 0 0 0 chr9 17487498 17487520 -124783924 + AT_rich Low_complexity Low_complexity 1 22 0 195 129 0 0 chr9 17489528 17489559 -124781885 + (GGGA)n Simple_repeat Simple_repeat 4 34 0 335 337 93 8 chr9 17489781 17490027 -124781417 + L2 LINE L2 2546 2812 -502 286 304 120 19 chr9 17490079 17490237 -124781207 + L2 LINE L2 2899 3072 -241 193 356 46 0 chr9 17490494 17490581 -124780863 - MIR3 SINE MIR -28 180 90 2056 109 0 40 chr9 17490648 17490775 -124780669 + AluSx SINE Alu 8 138 -174 198 0 0 0 chr9 17490775 17490797 -124780647 + (CCA)n Simple_repeat Simple_repeat 1 22 0 2056 109 0 40 chr9 17490797 17490973 -124780471 + AluSx SINE Alu 138 299 -13 1486 185 45 31 chr9 17491060 17491416 -124780028 + MLT1A1 LTR MaLR 5 365 0 505 248 33 28 chr9 17491475 17491689 -124779755 + L1ME3A LINE L1 5749 5963 -207 362 296 63 40 chr9 17492611 17492910 -124778534 + MLT1J1 LTR MaLR 4 346 -104 227 167 30 45 chr9 17493118 17493184 -124778260 + (TATATG)n Simple_repeat Simple_repeat 2 66 0 31 26 0 0 chr9 17494192 17494230 -124777214 + AT_rich Low_complexity Low_complexity 1 38 0 207 209 0 0 chr9 17494915 17494958 -124776486 + T-rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr9 17495466 17495487 -124775957 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 17495756 17495778 -124775666 + AT_rich Low_complexity Low_complexity 1 22 0 771 248 113 48 chr9 17495982 17496292 -124775152 - L2 LINE L2 -575 2739 2410 618 246 77 10 chr9 17496319 17496514 -124774930 - L1ME LINE L1 -302 5819 5612 43130 45 5 1 chr9 17496731 17502857 -124768587 + L1PA4 LINE L1 2 6152 -3 215 287 101 23 chr9 17502989 17503118 -124768326 - MIR SINE MIR 0 262 124 357 232 30 24 chr9 17503730 17503898 -124767546 + (TA)n Simple_repeat Simple_repeat 1 169 0 23 0 0 0 chr9 17504977 17505000 -124766444 + AT_rich Low_complexity Low_complexity 1 23 0 524 287 106 78 chr9 17505472 17505869 -124765575 - HAL1 LINE L1 -1231 1276 869 968 283 136 50 chr9 17505871 17506394 -124765050 + MLT1G1 LTR MaLR 3 570 -25 403 293 50 61 chr9 17506445 17506643 -124764801 - HAL1 LINE L1 -1633 874 679 550 303 53 14 chr9 17508550 17508758 -124762686 - MIR SINE MIR -11 251 36 1864 149 7 3 chr9 17509160 17509448 -124761996 + AluJo SINE Alu 1 289 -23 2344 86 0 10 chr9 17510491 17510794 -124760650 - AluY SINE Alu -11 300 1 2610 143 38 0 chr9 17511851 17512270 -124759174 - Tigger3(Golem) DNA MER2_type 0 3029 2595 1017 146 65 0 chr9 17512266 17512465 -124758979 - Tigger3(Golem) DNA MER2_type -537 2492 2281 * 440 198 26 103 chr9 17512462 17512504 -124758940 - Tigger3(Golem) DNA MER2_type -494 108 64 * 2281 97 0 13 chr9 17512504 17512814 -124758630 - AluSx SINE Alu -6 306 1 440 198 26 103 chr9 17512814 17512887 -124758557 - Tigger3(Golem) DNA MER2_type -538 64 2 515 253 68 37 chr9 17513279 17513441 -124758003 - MIR SINE MIR -48 214 48 2186 109 3 0 chr9 17514955 17515249 -124756195 - AluSq SINE Alu -18 295 1 25 0 0 0 chr9 17515472 17515497 -124755947 + AT_rich Low_complexity Low_complexity 1 25 0 624 307 66 53 chr9 17515703 17515876 -124755568 - MLT1I LTR MaLR -24 385 205 2354 47 47 0 chr9 17515876 17516173 -124755271 - AluY SINE Alu 0 311 1 624 307 66 53 chr9 17516173 17516318 -124755126 - MLT1I LTR MaLR -204 205 63 588 160 0 0 chr9 17518154 17518254 -124753190 - AluJ/FLAM SINE Alu -212 100 1 440 332 65 20 chr9 17518921 17519120 -124752324 + MIR SINE MIR 5 212 -50 259 224 0 0 chr9 17519205 17519254 -124752190 - MIR SINE MIR -1 261 213 23 0 0 0 chr9 17520753 17520776 -124750668 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr9 17521281 17521302 -124750142 + AT_rich Low_complexity Low_complexity 1 21 0 627 128 73 0 chr9 17522142 17522251 -124749193 + L1MB7 LINE L1 6068 6184 0 31 0 0 0 chr9 17522299 17522330 -124749114 + AT_rich Low_complexity Low_complexity 1 31 0 241 182 0 26 chr9 17523793 17523870 -124747574 + (TA)n Simple_repeat Simple_repeat 1 75 0 211 303 30 0 chr9 17527536 17527602 -124743842 + MIR3 SINE MIR 120 187 -21 35 41 0 0 chr9 17528251 17528300 -124743144 + AT_rich Low_complexity Low_complexity 1 49 0 205 211 18 0 chr9 17528833 17528890 -124742554 + (TA)n Simple_repeat Simple_repeat 1 58 0 22 0 0 0 chr9 17528954 17528976 -124742468 + AT_rich Low_complexity Low_complexity 1 22 0 29 47 0 0 chr9 17530862 17530905 -124740539 + AT_rich Low_complexity Low_complexity 1 43 0 11322 211 57 21 chr9 17531138 17535673 -124735771 - L1MB5 LINE L1 -36 5962 1237 10601 202 44 68 chr9 17535690 17536949 -124734495 - L1MB1 LINE L1 -1 6403 5115 1931 155 0 3 chr9 17536949 17537245 -124734199 - AluSx SINE Alu -17 295 1 10601 202 44 68 chr9 17537245 17537539 -124733905 - L1MB1 LINE L1 -1289 5115 4815 2017 133 3 7 chr9 17537539 17537840 -124733604 - AluSx SINE Alu -12 300 1 10601 202 44 68 chr9 17537840 17539159 -124732285 - L1MB1 LINE L1 -1589 4815 3466 1588 166 7 41 chr9 17539159 17539488 -124731956 - AluJo SINE Alu 0 319 1 10601 202 44 68 chr9 17539488 17540457 -124730987 - L1MB1 LINE L1 -2938 3466 2475 414 0 0 0 chr9 17540457 17540503 -124730941 + (TG)n Simple_repeat Simple_repeat 1 46 0 10601 202 44 68 chr9 17540503 17541706 -124729738 - L1MB1 LINE L1 -3929 2475 1457 3004 248 69 74 chr9 17541762 17542984 -124728460 - L1MB5 LINE L1 -4675 1216 1 303 200 14 14 chr9 17542981 17543051 -124728393 - L1M4c LINE L1 -4727 1919 1850 * 1645 207 45 61 chr9 17543083 17543591 -124727853 - L1M4c LINE L1 -5213 1329 830 608 278 0 11 chr9 17543588 17543764 -124727680 - L1M4c LINE L1 -6366 176 3 * 2204 43 0 7 chr9 17543844 17544121 -124727323 - L1PA5 LINE L1 -2 6152 5878 369 242 0 11 chr9 17544847 17544942 -124726502 - L1MC4 LINE L1 -1335 6707 6614 2825 100 28 23 chr9 17544950 17545380 -124726064 + Tigger2a DNA MER2_type 2 433 -1 237 65 0 0 chr9 17545381 17545412 -124726032 + (TG)n Simple_repeat Simple_repeat 2 32 0 248 338 162 0 chr9 17546079 17546221 -124725223 - L2 LINE L2 -930 2384 2220 426 314 33 0 chr9 17546323 17546444 -124725000 + L2 LINE L2 3188 3312 -1 24 0 0 0 chr9 17546778 17546802 -124724642 + AT_rich Low_complexity Low_complexity 1 24 0 1668 163 77 19 chr9 17548380 17548705 -124722739 + MER2 DNA MER2_type 1 344 0 23 0 0 0 chr9 17548940 17548963 -124722481 + AT_rich Low_complexity Low_complexity 1 23 0 180 97 0 0 chr9 17549047 17549078 -124722366 + (T)n Simple_repeat Simple_repeat 1 31 0 1125 196 48 0 chr9 17549494 17549703 -124721741 - MER58A DNA MER1_type 0 224 6 33 56 0 0 chr9 17550453 17550507 -124720937 + AT_rich Low_complexity Low_complexity 1 54 0 24 53 0 0 chr9 17554551 17554589 -124716855 + AT_rich Low_complexity Low_complexity 1 38 0 22 0 0 0 chr9 17555351 17555373 -124716071 + AT_rich Low_complexity Low_complexity 1 22 0 468 307 28 33 chr9 17555852 17556067 -124715377 - MIR SINE MIR 0 262 49 279 0 0 0 chr9 17556715 17556746 -124714698 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 225 339 27 0 chr9 17556747 17556859 -124714585 + MIR SINE MIR 148 262 0 5639 133 25 7 chr9 17557506 17558673 -124712771 + L1PA13 LINE L1 4978 6160 -3 564 289 44 88 chr9 17558653 17558839 -124712605 - L1ME4a LINE L1 -66 6055 5862 * 1527 148 29 0 chr9 17558839 17559117 -124712327 - L1MA4 LINE L1 0 6300 6015 564 289 44 88 chr9 17559117 17559450 -124711994 - L1ME4a LINE L1 -259 5862 5559 458 244 0 8 chr9 17559866 17559985 -124711459 - L1MA7 LINE L1 0 6291 6174 2057 97 7 45 chr9 17560003 17560311 -124711133 - AluSx SINE Alu -16 296 1 28 61 0 0 chr9 17560312 17560361 -124711083 + AT_rich Low_complexity Low_complexity 1 49 0 5308 159 42 8 chr9 17560882 17562084 -124709360 - L1MA4 LINE L1 -12 6288 5046 861 110 0 0 chr9 17562516 17562670 -124708774 + (TTCC)n Simple_repeat Simple_repeat 1 154 0 224 57 0 29 chr9 17562672 17562707 -124708737 + (TCCCC)n Simple_repeat Simple_repeat 2 35 0 1543 162 0 97 chr9 17562707 17563028 -124708416 - AluJo SINE Alu -11 291 2 297 216 120 56 chr9 17563874 17563999 -124707445 + MIR SINE MIR 120 252 -10 368 259 74 51 chr9 17564264 17564465 -124706979 + MIR SINE MIR 4 207 -55 5582 145 59 4 chr9 17565735 17566428 -124705016 + L1MA9 LINE L1 4928 5581 -731 306 0 0 0 chr9 17566428 17566462 -124704982 + (CA)n Simple_repeat Simple_repeat 2 35 0 5582 145 59 4 chr9 17566462 17566931 -124704513 + L1MA9 LINE L1 5581 6287 -25 487 238 10 0 chr9 17567158 17567259 -124704185 - MER93a LTR ERV1 -2 400 299 26 88 0 0 chr9 17567371 17567439 -124704005 + AT_rich Low_complexity Low_complexity 1 68 0 608 173 30 95 chr9 17568530 17568622 -124702822 + MER46C DNA MER2_type 176 254 -84 1904 147 0 10 chr9 17568622 17568915 -124702529 - AluSx SINE Alu 0 312 23 608 173 30 95 chr9 17568915 17568990 -124702454 + MER46C DNA MER2_type 254 332 -6 217 254 18 0 chr9 17569987 17570042 -124701402 - L2 LINE L2 -211 3061 3006 199 227 27 93 chr9 17570170 17570245 -124701199 + MIR3 SINE MIR 132 201 -7 333 127 0 0 chr9 17570382 17570445 -124700999 + L1MA10 LINE L1 6271 6333 -1 2722 143 0 7 chr9 17571798 17572239 -124699205 - L1PA11 LINE L1 -1914 4232 3795 6352 146 19 2 chr9 17572239 17574125 -124697319 + L1PA11 LINE L1 4247 6174 0 1105 285 152 11 chr9 17574126 17574658 -124696786 + L2 LINE L2 2707 3313 0 526 291 73 7 chr9 17577552 17577703 -124693741 + MIR SINE MIR 22 182 -80 196 247 118 24 chr9 17577716 17577801 -124693643 + MIR SINE MIR 143 235 -27 3799 205 75 51 chr9 17578373 17579717 -124691727 - L1MD2 LINE L1 -15 6344 4968 1512 244 66 17 chr9 17579725 17580301 -124691143 + MLT1E3 LTR MaLR 1 608 -16 187 247 13 65 chr9 17580366 17580443 -124691001 - L2 LINE L2 -2278 1036 964 284 236 181 28 chr9 17580635 17580779 -124690665 - Charlie7 DNA MER1_type -1 2611 2446 1951 170 29 10 chr9 17580819 17581202 -124690242 + L1MC1 LINE L1 5944 6333 0 556 304 96 8 chr9 17581309 17581549 -124689895 + Charlie7 DNA MER1_type 96 356 -2256 1344 237 157 23 chr9 17581549 17581921 -124689523 + Charlie7 DNA MER1_type 1479 1800 -812 312 27 0 0 chr9 17581921 17581958 -124689486 + (TA)n Simple_repeat Simple_repeat 2 38 0 1344 237 157 23 chr9 17581958 17582184 -124689260 + Charlie7 DNA MER1_type 1800 2157 -455 278 119 0 0 chr9 17582184 17582226 -124689218 - MSTA LTR MaLR 0 428 387 42530 48 7 0 chr9 17582228 17588334 -124683110 + L1PA4 LINE L1 7 6151 -4 782 201 165 27 chr9 17588334 17588646 -124682798 - MSTA LTR MaLR -27 401 1 268 169 62 0 chr9 17588741 17588806 -124682638 + Charlie7 DNA MER1_type 2278 2346 -266 23 33 0 0 chr9 17589342 17589372 -124682072 + AT_rich Low_complexity Low_complexity 1 30 0 2333 174 70 0 chr9 17589502 17589843 -124681601 - L1PB4 LINE L1 -2 6154 5771 207 0 0 0 chr9 17589843 17589866 -124681578 + (CA)n Simple_repeat Simple_repeat 1 23 0 2333 174 70 0 chr9 17589866 17589983 -124681461 - L1PB4 LINE L1 -385 5771 5664 1219 173 4 0 chr9 17589992 17590217 -124681227 - L1PB4 LINE L1 -1254 4892 4667 15196 100 10 1 chr9 17590217 17593228 -124678216 - L1PA7 LINE L1 -6 6463 3432 10804 109 5 1 chr9 17593228 17594766 -124676678 - L1PA7 LINE L1 -4910 1551 8 4579 184 17 2 chr9 17594775 17595697 -124675747 - L1PB4 LINE L1 -1478 4668 3733 35 0 0 0 chr9 17595769 17595804 -124675640 + AT_rich Low_complexity Low_complexity 1 35 0 362 196 62 27 chr9 17595901 17596013 -124675431 - MIR SINE MIR -10 252 137 522 333 46 17 chr9 17597719 17597956 -124673488 + MIR SINE MIR 16 259 -3 270 298 16 65 chr9 17597956 17598080 -124673364 - MIR SINE MIR -66 196 79 216 333 30 117 chr9 17598659 17598890 -124672554 - L2 LINE L2 -84 3188 2978 676 221 22 144 chr9 17600925 17601292 -124670152 + L2 LINE L2 2987 3308 -5 2583 112 35 7 chr9 17602198 17602858 -124668586 - L1MA8 LINE L1 -592 5699 5025 2988 153 40 17 chr9 17602860 17603454 -124667990 + L1MA8 LINE L1 5680 6287 -4 211 286 0 0 chr9 17603656 17603726 -124667718 + (TA)n Simple_repeat Simple_repeat 1 70 0 26 30 0 0 chr9 17603743 17603776 -124667668 + AT_rich Low_complexity Low_complexity 1 33 0 261 268 14 0 chr9 17603799 17603870 -124667574 - MLT1J LTR MaLR -316 195 124 409 303 136 23 chr9 17603919 17604140 -124667304 + MIR SINE MIR 17 262 0 288 354 84 17 chr9 17604307 17604652 -124666792 + L2 LINE L2 1718 2085 -1229 352 330 118 44 chr9 17604672 17605284 -124666160 - L2 LINE L2 0 3313 2650 246 298 141 0 chr9 17605299 17605420 -124666024 - L2 LINE L2 -851 2463 2326 186 298 96 58 chr9 17605628 17605732 -124665712 - L2 LINE L2 -45 3268 3161 324 278 225 31 chr9 17606244 17606435 -124665009 + MIR SINE MIR 25 252 -10 192 356 0 0 chr9 17607681 17607740 -124663704 + MIR SINE MIR 1 59 -203 237 299 183 52 chr9 17607786 17608131 -124663313 - L2 LINE L2 -51 3221 2832 236 229 55 0 chr9 17608683 17608792 -124662652 + (TA)n Simple_repeat Simple_repeat 1 115 0 268 358 89 46 chr9 17609030 17609466 -124661978 + L2 LINE L2 2286 2740 -574 369 161 0 0 chr9 17610397 17610483 -124660961 + L1M4 LINE L1 4954 5039 -1107 1084 172 18 0 chr9 17610497 17610718 -124660726 - L1MA6 LINE L1 -5 6295 6071 10420 162 56 18 chr9 17610720 17613415 -124658029 - L1MA6 LINE L1 -607 5693 2892 3990 171 53 21 chr9 17613408 17613822 -124657622 + L1MB5 LINE L1 4954 5354 -820 * 1678 165 18 4 chr9 17613822 17614094 -124657350 + AluJo SINE Alu 37 312 0 3990 171 53 21 chr9 17614094 17614863 -124656581 + L1MB5 LINE L1 5354 6173 -1 524 337 15 35 chr9 17614922 17615124 -124656320 + MIR3 SINE MIR 2 199 -9 22 0 0 0 chr9 17615215 17615237 -124656207 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr9 17617013 17617044 -124654400 + AT_rich Low_complexity Low_complexity 1 31 0 493 295 98 12 chr9 17617768 17617941 -124653503 - MIR SINE MIR -60 202 15 448 215 43 11 chr9 17620439 17620532 -124650912 + FLAM_A SINE Alu 20 115 -27 494 256 83 0 chr9 17620568 17620689 -124650755 + MIR3 SINE MIR 57 187 -21 238 321 64 18 chr9 17621613 17621722 -124649722 + L2 LINE L2 2872 2985 -287 269 295 48 38 chr9 17623226 17623331 -124648113 + L2 LINE L2 3167 3272 0 346 321 25 3 chr9 17624114 17624300 -124647144 - MIR SINE MIR -5 257 26 609 14 0 0 chr9 17624501 17624571 -124646873 + (TTTC)n Simple_repeat Simple_repeat 3 72 0 7769 16 0 0 chr9 17624571 17625735 -124645709 - L1PA3 LINE L1 -10 6145 4980 1246 126 0 0 chr9 17625846 17626021 -124645423 + AluSg/x SINE Alu 137 311 -1 196 268 99 0 chr9 17626021 17626092 -124645352 + MIR SINE MIR 150 227 -35 192 77 0 0 chr9 17627999 17628025 -124643419 + (A)n Simple_repeat Simple_repeat 1 26 0 182 317 99 19 chr9 17628416 17628577 -124642867 + L2 LINE L2 2623 2796 -518 242 216 0 0 chr9 17628594 17628645 -124642799 + MLT1F1 LTR MaLR 17 67 -500 200 313 171 9 chr9 17628711 17628928 -124642516 + L2 LINE L2 92 343 -2971 292 256 23 0 chr9 17628929 17629015 -124642429 + MER112 DNA MER1_type 164 251 -9 396 263 63 63 chr9 17629384 17629559 -124641885 + MIR SINE MIR 60 234 -28 413 257 99 13 chr9 17629583 17629735 -124641709 - Charlie8 DNA MER1_type -2234 183 19 477 272 78 19 chr9 17631212 17631418 -124640026 - MIR SINE MIR -33 229 12 232 262 173 30 chr9 17631478 17631646 -124639798 - L2 LINE L2 -87 3185 2994 202 305 138 4 chr9 17632619 17632754 -124638690 - MIR3 SINE MIR -14 248 86 471 277 209 0 chr9 17633601 17633850 -124637594 + Charlie2 DNA MER1_type 1 301 -2481 416 240 156 28 chr9 17633975 17634154 -124637290 + Charlie2a DNA MER1_type 1462 1663 -1199 383 246 65 22 chr9 17634173 17634311 -124637133 + Charlie2a DNA MER1_type 2718 2861 -1 832 198 36 1 chr9 17635317 17635629 -124635815 + MLT1A1 LTR MaLR 1 365 0 1967 147 0 45 chr9 17636120 17636434 -124635010 + AluJb SINE Alu 1 300 -12 183 238 0 79 chr9 17638282 17638345 -124633099 - L2 LINE L2 -94 3219 3162 195 42 0 0 chr9 17638446 17638470 -124632974 - MIR SINE MIR -63 145 122 1369 109 17 30 chr9 17638477 17638707 -124632737 - THE1C LTR MaLR 0 375 149 21 0 0 0 chr9 17639397 17639418 -124632026 + AT_rich Low_complexity Low_complexity 1 21 0 213 94 0 0 chr9 17640218 17640250 -124631194 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 356 242 61 8 chr9 17640359 17640491 -124630953 - L1ME4a LINE L1 -2 6119 5981 2120 226 43 17 chr9 17640558 17641169 -124630275 + MLT1E3 LTR MaLR 1 624 0 1439 196 122 26 chr9 17642325 17642743 -124628701 - MLT1C LTR MaLR -9 458 1 210 222 0 56 chr9 17642880 17642934 -124628510 + L2 LINE L2 3262 3312 -1 306 73 0 0 chr9 17644186 17644227 -124627217 + (CA)n Simple_repeat Simple_repeat 2 42 0 219 114 0 0 chr9 17644474 17644509 -124626935 + (CAG)n Simple_repeat Simple_repeat 1 35 0 315 271 0 0 chr9 17645822 17645892 -124625552 + MIR SINE MIR 79 148 -114 248 245 179 32 chr9 17645917 17646061 -124625383 + MIR SINE MIR 5 163 -77 2353 157 39 2 chr9 17646342 17646657 -124624787 - Tigger2a DNA MER2_type -2280 428 93 429 20 0 0 chr9 17646657 17646707 -124624737 + (GGA)n Simple_repeat Simple_repeat 2 51 0 2353 157 39 2 chr9 17646707 17646804 -124624640 - Tigger2a DNA MER2_type -2615 93 1 614 353 37 12 chr9 17646890 17647134 -124624310 - MIR SINE MIR -9 253 4 319 324 75 29 chr9 17647243 17647416 -124624028 - MIR SINE MIR -74 188 8 282 258 32 21 chr9 17648260 17648353 -124623091 + MIR SINE MIR 12 105 -157 455 249 29 35 chr9 17648737 17648910 -124622534 + Charlie8 DNA MER1_type 95 266 -2151 322 205 133 12 chr9 17648999 17649082 -124622362 + MER5A DNA MER1_type 4 96 -93 1134 145 65 0 chr9 17649162 17649348 -124622096 + MER58A DNA MER1_type 27 224 0 427 336 103 11 chr9 17650458 17650720 -124620724 - L3b LINE CR1 -194 1389 1104 356 304 114 6 chr9 17650966 17651124 -124620320 - MIR SINE MIR 0 262 88 413 200 38 0 chr9 17651236 17651316 -124620128 + L2 LINE L2 3190 3272 0 2662 102 3 3 chr9 17651415 17651776 -124619668 + THE1B LTR MaLR 1 361 -3 385 266 22 44 chr9 17651796 17651953 -124619491 + MER5A DNA MER1_type 7 168 -18 1046 233 67 75 chr9 17651956 17652446 -124618998 + LTR33 LTR ERVL 32 517 -4 236 296 217 0 chr9 17653798 17653950 -124617494 - MIR SINE MIR -69 193 9 1463 294 94 6 chr9 17654207 17654718 -124616726 - MLT1L LTR MaLR -57 558 3 322 282 23 30 chr9 17654942 17655073 -124616371 - L1ME LINE L1 -352 5769 5640 303 279 197 33 chr9 17655085 17655329 -124616115 - L1ME LINE L1 -588 5582 5299 676 207 132 24 chr9 17655969 17656178 -124615266 + MIR SINE MIR 33 261 -1 210 354 186 0 chr9 17656187 17656300 -124615144 - L2 LINE L2 -2 3270 3137 193 389 21 7 chr9 17656665 17656809 -124614635 - L2 LINE L2 -659 2655 2510 664 251 78 33 chr9 17658094 17658337 -124613107 - L2 LINE L2 0 3313 3060 1081 234 28 16 chr9 17658337 17658589 -124612855 - MLT1E1 LTR MaLR 0 654 400 439 245 69 24 chr9 17658632 17658824 -124612620 - MLT1E1 LTR MaLR -402 252 1 593 314 136 9 chr9 17658827 17659306 -124612138 - L2 LINE L2 -252 3061 2516 940 263 24 24 chr9 17659324 17659571 -124611873 + MIR SINE MIR 12 258 -4 208 302 160 47 chr9 17659603 17659709 -124611735 - L2 LINE L2 -805 2509 2392 1815 169 25 19 chr9 17659941 17660303 -124611141 + MLT1A1 LTR MaLR 2 365 0 14559 200 40 9 chr9 17660911 17667241 -124604203 + L1PB1 LINE L1 6 6864 -3 26 0 0 0 chr9 17667241 17667267 -124604177 + AT_rich Low_complexity Low_complexity 1 26 0 352 337 20 65 chr9 17667284 17667483 -124603961 + L2 LINE L2 3027 3216 -56 1055 194 38 0 chr9 17667486 17667672 -124603772 - MLT1A1 LTR MaLR 0 365 173 340 286 99 31 chr9 17667763 17667924 -124603520 + HERV16 LTR ERVL 137 308 -4688 4068 177 91 29 chr9 17668086 17668957 -124602487 + MER45B DNA AcHobo 116 1040 0 221 296 179 34 chr9 17669082 17669261 -124602183 + MIR SINE MIR 58 262 0 4595 113 2 2 chr9 17669519 17670154 -124601290 + MER41B LTR ERV1 1 635 0 343 61 0 0 chr9 17672880 17672929 -124598515 + Alu SINE Alu 251 299 -1 2225 96 3 0 chr9 17673077 17673380 -124598064 - AluSx SINE Alu -8 304 1 490 282 77 28 chr9 17675866 17676047 -124595397 + MIR SINE MIR 73 262 0 2264 219 98 25 chr9 17676387 17676963 -124594481 - L1ME2 LINE L1 -9 6155 5530 216 0 0 0 chr9 17676963 17676987 -124594457 + (CA)n Simple_repeat Simple_repeat 1 24 0 2264 219 98 25 chr9 17676987 17677022 -124594422 - L1ME2 LINE L1 -634 5530 5499 862 129 18 61 chr9 17677073 17677236 -124594208 - MER97b DNA MER1_type? -874 179 24 714 258 63 0 chr9 17677262 17677502 -124593942 - L1ME2 LINE L1 -704 5470 5216 424 254 9 18 chr9 17678265 17678379 -124593065 + MIR SINE MIR 148 260 -2 389 49 16 0 chr9 17678720 17678781 -124592663 - L1MA7 LINE L1 -1 6290 6229 336 228 51 13 chr9 17679121 17679200 -124592244 + MIR SINE MIR 34 115 -93 923 113 28 0 chr9 17679712 17679854 -124591590 + AluSg/x SINE Alu 160 305 -7 228 67 0 0 chr9 17680385 17680415 -124591029 + (TG)n Simple_repeat Simple_repeat 2 31 0 277 290 43 36 chr9 17682752 17682890 -124588554 - MIR3 SINE MIR -66 142 4 505 276 33 20 chr9 17683056 17683208 -124588236 + MIR SINE MIR 95 248 -14 372 253 67 62 chr9 17683469 17683647 -124587797 - MIR SINE MIR -11 251 74 1936 178 27 0 chr9 17683996 17684334 -124587110 + MLT1A1 LTR MaLR 7 353 -12 211 287 164 41 chr9 17684687 17685028 -124586416 + L2 LINE L2 2425 2807 -507 293 266 9 55 chr9 17685717 17685826 -124585618 + MIR3 SINE MIR 57 160 -48 266 308 0 110 chr9 17686732 17686766 -124584678 + MIR SINE MIR 20 56 -206 2138 96 0 3 chr9 17686766 17687059 -124584385 - AluSc SINE Alu -17 292 1 266 308 0 110 chr9 17687059 17687170 -124584274 + MIR SINE MIR 56 149 -113 1231 273 54 14 chr9 17737197 17737567 -124533877 - MLT1I LTR MaLR 0 409 25 410 232 84 112 chr9 17737643 17737988 -124533456 + LTR67 LTR ERVL 153 556 -1 39 68 0 0 chr9 17738391 17738465 -124532979 + AT_rich Low_complexity Low_complexity 1 74 0 234 0 0 0 chr9 17738474 17738500 -124532944 + (TAGA)n Simple_repeat Simple_repeat 1 26 0 244 325 53 9 chr9 17738755 17738869 -124532575 + MIR SINE MIR 117 235 -27 432 0 0 0 chr9 17739100 17739148 -124532296 + (CA)n Simple_repeat Simple_repeat 2 49 0 894 176 110 144 chr9 17739302 17739711 -124531733 - MSTD LTR MaLR -1 395 1 243 103 0 0 chr9 17739712 17739751 -124531693 + (TC)n Simple_repeat Simple_repeat 2 40 0 744 281 41 15 chr9 17740967 17741237 -124530207 - L1ME1 LINE L1 -1 6165 5889 2770 255 84 18 chr9 17741238 17742353 -124529091 - L1MDa LINE L1 -4318 1762 574 1205 237 153 27 chr9 17742353 17742725 -124528719 - MLT1E LTR MaLR 0 593 175 251 300 100 17 chr9 17742794 17742914 -124528530 - MLT1E LTR MaLR -520 134 5 2639 129 39 9 chr9 17742915 17743350 -124528094 + L1MB3 LINE L1 5729 6176 -7 233 294 64 54 chr9 17743384 17743588 -124527856 - L1MDa LINE L1 -5477 593 388 1240 153 70 0 chr9 17747598 17747813 -124523631 - L1PA16 LINE L1 -9 6157 5928 185 32 0 65 chr9 17748675 17748706 -124522738 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 488 59 15 0 chr9 17751659 17751727 -124519717 + (GA)n Simple_repeat Simple_repeat 2 70 0 192 158 0 0 chr9 17756097 17756135 -124515309 + A-rich Low_complexity Low_complexity 1 38 0 216 214 0 0 chr9 17757498 17757540 -124513904 + T-rich Low_complexity Low_complexity 1 42 0 384 59 0 0 chr9 17757624 17757675 -124513769 + (TG)n Simple_repeat Simple_repeat 2 52 0 243 0 0 0 chr9 17757898 17757925 -124513519 + (CA)n Simple_repeat Simple_repeat 1 27 0 237 196 0 0 chr9 17759688 17759744 -124511700 + (TA)n Simple_repeat Simple_repeat 1 56 0 273 98 0 0 chr9 17760350 17760391 -124511053 + (GA)n Simple_repeat Simple_repeat 2 42 0 205 293 37 0 chr9 17763430 17763512 -124507932 + (CATATA)n Simple_repeat Simple_repeat 6 90 0 * 221 250 0 0 chr9 17763466 17763514 -124507930 + (TATG)n Simple_repeat Simple_repeat 1 48 0 977 175 0 18 chr9 17765163 17765329 -124506115 - AluSx SINE Alu -149 163 1 6244 13 0 5 chr9 17765956 17766715 -124504729 + L1HS LINE L1 5400 6154 -1 1066 149 11 6 chr9 17766901 17767075 -124504369 - AluJb SINE Alu -1 311 137 471 287 84 84 chr9 17767186 17767257 -124504187 - MIR SINE MIR 0 262 192 2362 93 10 0 chr9 17767257 17767559 -124503885 - AluSc SINE Alu -2 307 3 471 287 84 84 chr9 17767559 17767738 -124503706 - MIR SINE MIR -69 193 12 2537 104 3 3 chr9 17768095 17768450 -124502994 + THE1A LTR MaLR 1 355 0 11277 99 8 13 chr9 17768450 17768860 -124502584 + THE1A-int LTR MaLR 1 412 -1168 2501 85 0 0 chr9 17768860 17769167 -124502277 - AluY SINE Alu -4 307 1 11277 99 8 13 chr9 17769167 17770163 -124501281 + THE1A-int LTR MaLR 412 1399 -181 2379 97 0 0 chr9 17770163 17770462 -124500982 - AluSg SINE Alu -11 299 1 11277 99 8 13 chr9 17770462 17770643 -124500801 + THE1A-int LTR MaLR 1399 1580 0 2702 87 0 3 chr9 17770643 17770999 -124500445 + THE1A LTR MaLR 1 355 0 25 0 0 0 chr9 17772319 17772344 -124499100 + AT_rich Low_complexity Low_complexity 1 25 0 196 329 71 0 chr9 17772344 17772414 -124499030 + MIR SINE MIR 53 127 -81 2338 104 7 0 chr9 17772463 17772770 -124498674 + AluSx SINE Alu 1 309 -3 432 294 91 91 chr9 17775297 17775606 -124495838 + L2 LINE L2 2964 3272 0 664 211 0 14 chr9 17776000 17776142 -124495302 + FRAM SINE Alu 20 159 -17 675 311 122 12 chr9 17776928 17777272 -124494172 - L3 LINE CR1 -141 1436 1055 2318 107 7 0 chr9 17777840 17778150 -124493294 + AluSx SINE Alu 1 312 0 265 275 46 9 chr9 17778362 17778471 -124492973 - L1MC4 LINE L1 -1 8041 7929 497 236 93 125 chr9 17778876 17779092 -124492352 - MIR SINE MIR -16 246 38 4079 143 38 57 chr9 17779195 17780170 -124491274 + pTR5 LTR ERV1 741 2025 -413 292 224 31 20 chr9 17780170 17780268 -124491176 + LTR30 LTR ERV1 544 642 -80 1330 118 68 0 chr9 17780269 17780489 -124490955 + LTR12 LTR ERV1 480 714 0 405 272 69 52 chr9 17780725 17780898 -124490546 + MIR SINE MIR 82 257 -5 23 0 0 0 chr9 17781180 17781203 -124490241 + AT_rich Low_complexity Low_complexity 1 23 0 333 62 0 0 chr9 17783954 17784002 -124487442 + (CA)n Simple_repeat Simple_repeat 2 49 0 1108 179 66 14 chr9 17784492 17784704 -124486740 + AluJo SINE Alu 85 307 -5 1606 171 61 0 chr9 17785599 17785879 -124485565 - AluJo SINE Alu -15 297 1 187 247 79 90 chr9 17785944 17786033 -124485411 - MIR SINE MIR -114 148 61 626 190 110 17 chr9 17787840 17788077 -124483367 - MER3 DNA MER1_type 0 2624 2366 522 149 149 0 chr9 17788077 17788184 -124483260 + MER3 DNA MER1_type 87 209 0 2808 59 3 0 chr9 17788936 17789290 -124482154 - THE1A LTR MaLR 0 355 1 231 291 36 0 chr9 17789401 17789456 -124481988 + L2 LINE L2 3123 3179 -93 185 241 103 83 chr9 17790356 17790501 -124480943 - L2 LINE L2 -891 2423 2276 319 353 152 31 chr9 17792371 17792785 -124478659 - L2 LINE L2 -1 3271 2808 686 286 158 53 chr9 17792789 17792960 -124478484 - L2 LINE L2 -2 3311 3159 2280 117 0 0 chr9 17792960 17793259 -124478185 - AluSc SINE Alu -10 299 1 686 286 158 53 chr9 17793259 17793587 -124477857 - L2 LINE L2 -154 3159 2867 1682 65 0 0 chr9 17793587 17793801 -124477643 + L1PA6 LINE L1 5941 6154 0 686 286 158 53 chr9 17793801 17793972 -124477472 - L2 LINE L2 -446 2867 2570 183 284 15 30 chr9 17794195 17794262 -124477182 + L3 LINE CR1 902 967 -610 454 273 62 31 chr9 17794359 17794520 -124476924 + MER91A DNA MER1_type 29 194 -2 2466 105 0 0 chr9 17794704 17795017 -124476427 - AluSq SINE Alu 0 313 1 233 0 62 0 chr9 17795035 17795067 -124476377 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 22 0 0 0 chr9 17795443 17795465 -124475979 + AT_rich Low_complexity Low_complexity 1 22 0 229 232 27 80 chr9 17796083 17796195 -124475249 - MIR SINE MIR -67 195 90 468 320 23 27 chr9 17796269 17796488 -124474956 - L2 LINE L2 -4 3309 3092 694 110 0 71 chr9 17796684 17796787 -124474657 + L1PB1 LINE L1 5678 5772 -379 375 23 0 0 chr9 17796787 17796831 -124474613 + (TG)n Simple_repeat Simple_repeat 2 45 0 694 110 0 71 chr9 17796831 17796854 -124474590 + L1PB1 LINE L1 5772 5795 -356 245 52 36 119 chr9 17796869 17797063 -124474381 + (TA)n Simple_repeat Simple_repeat 2 179 0 2257 122 14 11 chr9 17797112 17797480 -124473964 + L1PB1 LINE L1 5782 6150 -1 206 313 0 0 chr9 17797587 17797635 -124473809 + MIR SINE MIR 32 79 -129 520 286 82 48 chr9 17797916 17798147 -124473297 - MIR SINE MIR -1 261 23 27 0 0 0 chr9 17798174 17798201 -124473243 + AT_rich Low_complexity Low_complexity 1 27 0 2231 132 0 3 chr9 17798329 17798639 -124472805 - AluSx SINE Alu -3 309 1 914 275 14 0 chr9 17799771 17799978 -124471466 + MIR SINE MIR 7 216 -46 1473 199 59 4 chr9 17800900 17801171 -124470273 + AluJo SINE Alu 12 297 -15 209 280 67 13 chr9 17802893 17802968 -124468476 + MIR SINE MIR 68 146 -62 990 186 0 0 chr9 17803509 17803681 -124467763 + FAM SINE Alu 1 172 -3 508 269 108 21 chr9 17803771 17803957 -124467487 + MIR SINE MIR 5 206 -56 263 29 0 0 chr9 17805065 17805099 -124466345 - AluSq/x SINE Alu -181 121 88 218 28 0 56 chr9 17805099 17805135 -124466309 + (TTTG)n Simple_repeat Simple_repeat 1 34 0 1963 115 4 11 chr9 17805135 17805414 -124466030 - AluSq SINE Alu -36 277 1 1083 115 29 40 chr9 17805611 17805785 -124465659 - AluSg/x SINE Alu -5 305 134 2341 110 0 0 chr9 17805787 17806087 -124465357 - AluSg SINE Alu -10 300 1 249 376 32 0 chr9 17806368 17806461 -124464983 - L2 LINE L2 -40 3232 3137 1717 174 20 30 chr9 17807182 17807486 -124463958 - AluJo SINE Alu -11 301 1 1882 174 0 7 chr9 17809466 17809770 -124461674 - AluJo SINE Alu -9 303 2 2052 142 0 10 chr9 17809781 17810091 -124461353 - AluJo SINE Alu -5 307 1 237 65 0 0 chr9 17810836 17810867 -124460577 + (CA)n Simple_repeat Simple_repeat 2 32 0 2009 144 20 0 chr9 17811214 17811520 -124459924 + AluSx SINE Alu 1 312 0 2470 65 7 0 chr9 17811657 17811964 -124459480 - AluY SINE Alu -2 309 1 192 40 0 0 chr9 17813145 17813170 -124458274 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 25 0 0 0 chr9 17814078 17814103 -124457341 + AT_rich Low_complexity Low_complexity 1 25 0 21 57 0 0 chr9 17815083 17815118 -124456326 + AT_rich Low_complexity Low_complexity 1 35 0 38 22 0 0 chr9 17816462 17816507 -124454937 + AT_rich Low_complexity Low_complexity 1 45 0 1629 176 29 23 chr9 17816507 17816813 -124454631 + AluJo SINE Alu 1 308 -4 180 0 0 0 chr9 17816943 17816963 -124454481 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1950 122 51 0 chr9 17816965 17817261 -124454183 - AluSq SINE Alu -2 311 1 561 291 44 0 chr9 17818034 17818192 -124453252 - MIR SINE MIR -45 217 53 2221 82 0 0 chr9 17821549 17821865 -124449579 + AluY SINE Alu 1 316 0 1889 76 35 111 chr9 17822005 17822321 -124449123 + AluSq SINE Alu 1 292 -21 1831 150 7 0 chr9 17823151 17823425 -124448019 + AluJb SINE Alu 1 276 -36 202 185 37 0 chr9 17823616 17823670 -124447774 + A-rich Low_complexity Low_complexity 2 57 0 311 199 71 35 chr9 17823781 17823922 -124447522 + L1MC4a LINE L1 5313 5458 -2350 579 164 82 8 chr9 17823994 17824116 -124447328 + L1MC4a LINE L1 5771 5901 -1907 234 0 0 0 chr9 17824827 17824853 -124446591 + (T)n Simple_repeat Simple_repeat 1 26 0 236 371 86 63 chr9 17825115 17825430 -124446014 - L2 LINE L2 -2 3270 2949 1942 116 11 21 chr9 17826020 17826305 -124445139 - AluJo SINE Alu -19 293 12 2286 107 0 3 chr9 17827221 17827519 -124443925 + AluSq SINE Alu 1 297 -16 1002 85 0 0 chr9 17828133 17828263 -124443181 + Alu SINE Alu 171 300 -10 2586 181 52 17 chr9 17829041 17829584 -124441860 - MER68 LTR ERV1 0 562 1 279 262 0 48 chr9 17830459 17830543 -124440901 - MIR SINE MIR 0 262 183 215 175 0 63 chr9 17832013 17832053 -124439391 + A-rich Low_complexity Low_complexity 2 38 -22 1953 150 7 0 chr9 17832053 17832339 -124439105 + AluSx SINE Alu 1 288 -24 215 175 0 63 chr9 17832339 17832361 -124439083 + A-rich Low_complexity Low_complexity 38 60 0 294 327 95 38 chr9 17832385 17832596 -124438848 + MIR SINE MIR 34 256 -6 2776 13 0 0 chr9 17835004 17835308 -124436136 - AluYa5 SINE Alu -7 304 1 307 162 0 4 chr9 17835471 17835531 -124435913 + Alu SINE Alu 1 44 -264 1998 159 7 0 chr9 17835531 17835833 -124435611 + AluSx SINE Alu 6 309 -3 29 28 0 0 chr9 17836078 17836114 -124435330 + AT_rich Low_complexity Low_complexity 1 36 0 23 33 0 0 chr9 17836266 17836296 -124435148 + AT_rich Low_complexity Low_complexity 1 30 0 693 119 10 0 chr9 17836358 17836459 -124434985 - AluSq SINE Alu -102 211 110 184 349 15 83 chr9 17836651 17836783 -124434661 + L2 LINE L2 2657 2779 -535 2024 144 7 0 chr9 17836866 17837165 -124434279 + AluSx SINE Alu 1 301 -11 296 26 0 0 chr9 17837531 17837570 -124433874 + L1P LINE L1 4129 4167 -1979 1740 89 0 0 chr9 17837775 17837988 -124433456 + AluSg SINE Alu 1 213 -97 711 193 48 30 chr9 17838175 17838341 -124433103 - AluSg/x SINE Alu -8 302 134 353 329 91 18 chr9 17838672 17838891 -124432553 + MIR SINE MIR 28 262 0 236 228 53 0 chr9 17838909 17838966 -124432478 - MIR SINE MIR -91 171 112 1930 111 55 0 chr9 17839297 17839568 -124431876 + AluSx SINE Alu 2 287 -25 185 278 0 19 chr9 17839635 17839689 -124431755 - L2 LINE L2 0 3272 3220 409 304 65 30 chr9 17839951 17840119 -124431325 + MIR3 SINE MIR 19 192 -16 305 273 124 50 chr9 17840370 17840612 -124430832 - L2 LINE L2 -353 2961 2702 21 0 0 0 chr9 17841705 17841726 -124429718 + AT_rich Low_complexity Low_complexity 1 21 0 2071 143 24 21 chr9 17847998 17848334 -124423110 - MER1B DNA MER1_type 0 337 1 28 0 0 0 chr9 17851490 17851518 -124419926 + AT_rich Low_complexity Low_complexity 1 28 0 1614 231 81 21 chr9 17855035 17855211 -124416233 + L1MC4a LINE L1 7209 7373 -435 2582 108 11 0 chr9 17855211 17855571 -124415873 + THE1B LTR MaLR 1 364 0 1614 231 81 21 chr9 17855571 17855926 -124415518 + L1MC4a LINE L1 7373 7772 -36 180 376 20 0 chr9 17856471 17856572 -124414872 - MIR SINE MIR -126 136 34 1423 188 89 0 chr9 17857364 17857635 -124413809 + AluJo SINE Alu 1 295 -17 1588 119 0 9 chr9 17859144 17859371 -124412073 + AluSq SINE Alu 1 225 -88 180 0 0 0 chr9 17859385 17859405 -124412039 + (A)n Simple_repeat Simple_repeat 1 20 0 1196 209 110 11 chr9 17859937 17860301 -124411143 + L1ME1 LINE L1 5762 6161 -5 362 156 26 0 chr9 17860588 17860665 -124410779 + Charlie7 DNA MER1_type 2532 2610 -2 535 268 62 18 chr9 17861329 17861553 -124409891 + L1MC4a LINE L1 5616 5849 -1959 716 213 92 42 chr9 17861561 17861976 -124409468 - MLT1C LTR MaLR 0 467 21 31 0 0 0 chr9 17862364 17862395 -124409049 + AT_rich Low_complexity Low_complexity 1 31 0 1833 139 48 20 chr9 17862558 17862853 -124408591 - AluSx SINE Alu -9 303 1 22 35 0 0 chr9 17864531 17864560 -124406884 + AT_rich Low_complexity Low_complexity 1 29 0 1564 175 18 94 chr9 17865228 17865662 -124405782 - MER63 DNA MER1_type 0 1060 660 258 256 48 77 chr9 17868479 17868647 -124402797 + MLT1H LTR MaLR 123 285 -264 196 268 54 18 chr9 17871688 17871744 -124399700 + L2 LINE L2 3144 3201 -71 1495 174 0 52 chr9 17871944 17872232 -124399212 + AluJb SINE Alu 1 273 -39 858 156 6 11 chr9 17872239 17872419 -124399025 + GA-rich Low_complexity Low_complexity 2 180 0 1174 76 6 6 chr9 17872425 17872597 -124398847 + (GGAAA)n Simple_repeat Simple_repeat 4 175 0 207 0 0 0 chr9 17872870 17872893 -124398551 + (T)n Simple_repeat Simple_repeat 1 23 0 223 313 16 0 chr9 17875073 17875137 -124396307 + GA-rich Low_complexity Low_complexity 1 65 0 2043 135 30 3 chr9 17877249 17877546 -124393898 + AluSx SINE Alu 1 305 -7 224 361 69 15 chr9 17877671 17877801 -124393643 - MIR SINE MIR -123 139 3 234 273 0 0 chr9 17877814 17877869 -124393575 + (TATATG)n Simple_repeat Simple_repeat 4 58 0 538 311 85 14 chr9 17878048 17878260 -124393184 - MIR SINE MIR -2 260 34 247 272 58 58 chr9 17879634 17879737 -124391707 - L2 LINE L2 -16 3256 3154 262 348 62 29 chr9 17880334 17880544 -124390900 - L2 LINE L2 -256 3057 2841 2198 133 3 0 chr9 17881109 17881418 -124390026 - AluSx SINE Alu -2 310 1 34 0 0 0 chr9 17882702 17882736 -124388708 + AT_rich Low_complexity Low_complexity 1 34 0 1523 67 95 0 chr9 17882870 17883080 -124388364 - MER30 DNA MER1_type 0 230 1 2348 65 3 16 chr9 17887729 17888035 -124383409 - AluY SINE Alu -9 302 1 1848 156 10 10 chr9 17888227 17888534 -124382910 + AluJb SINE Alu 1 307 -5 716 204 15 68 chr9 17888560 17888730 -124382714 - MER58A DNA MER1_type -2196 224 65 1661 172 38 7 chr9 17888730 17889021 -124382423 + AluJb SINE Alu 1 300 -12 716 204 15 68 chr9 17889021 17889056 -124382388 - MER58A DNA MER1_type -2355 65 30 2373 99 0 0 chr9 17889200 17889494 -124381950 + AluSc SINE Alu 1 294 -15 2074 135 0 10 chr9 17889929 17890233 -124381211 + AluSx SINE Alu 1 301 -11 328 348 26 30 chr9 17890451 17890557 -124380887 + MLT1K LTR MaLR 16 121 -467 1662 156 57 27 chr9 17890557 17890858 -124380586 - AluJb SINE Alu 0 312 3 328 348 26 30 chr9 17890858 17891018 -124380426 + MLT1K LTR MaLR 121 281 -307 225 303 0 34 chr9 17891120 17891209 -124380235 + MLT1K LTR MaLR 434 519 -69 2325 93 0 17 chr9 17891362 17891664 -124379780 + AluSg SINE Alu 2 298 -12 1155 55 88 22 chr9 17891921 17892103 -124379341 - MER30 DNA MER1_type -36 194 1 308 253 75 42 chr9 17892113 17892233 -124379211 - MIR SINE MIR -64 198 76 247 354 24 6 chr9 17892327 17892491 -124378953 + L2 LINE L2 1845 2011 -1303 944 150 61 11 chr9 17892761 17892941 -124378503 - MER5A DNA MER1_type 0 189 1 306 127 0 0 chr9 17893077 17893140 -124378304 - Charlie2a DNA MER1_type -1840 1022 960 1229 219 3 56 chr9 17893147 17893467 -124377977 + AluJo SINE Alu 6 308 -4 2053 130 3 3 chr9 17893668 17893969 -124377475 + AluSq SINE Alu 1 301 -12 2892 223 155 104 chr9 17894127 17894433 -124377011 + Charlie2a DNA MER1_type 1 290 -2572 2126 130 0 7 chr9 17894433 17894740 -124376704 + AluJb SINE Alu 1 305 -7 2892 223 155 104 chr9 17894740 17896049 -124375395 + Charlie2a DNA MER1_type 290 1889 -973 814 164 15 0 chr9 17896049 17896183 -124375261 + AluSq/x SINE Alu 1 136 -176 2892 223 155 104 chr9 17896183 17896644 -124374800 + Charlie2a DNA MER1_type 1889 2325 -537 29 47 0 0 chr9 17896663 17896706 -124374738 + AT_rich Low_complexity Low_complexity 1 43 0 297 253 121 0 chr9 17896871 17896954 -124374490 + MIR SINE MIR 16 108 -154 378 168 147 89 chr9 17897449 17897640 -124373804 - L1ME4a LINE L1 -66 6055 5854 260 411 0 0 chr9 17898138 17898228 -124373216 - L2 LINE L2 -49 3223 3134 1908 163 13 0 chr9 17898242 17898548 -124372896 + AluJb SINE Alu 2 311 -1 1800 174 23 0 chr9 17905658 17905963 -124365481 + AluJb SINE Alu 1 312 0 704 167 151 23 chr9 17905966 17906243 -124365201 - MER33 DNA MER1_type -14 310 1 256 278 230 0 chr9 17907551 17907677 -124363767 - MIR SINE MIR -105 157 3 645 289 125 0 chr9 17907735 17907967 -124363477 - MIR SINE MIR 0 262 2 2362 87 0 0 chr9 17909448 17909746 -124361698 - AluSc SINE Alu -11 298 1 293 154 0 0 chr9 17909839 17909891 -124361553 + MER53 DNA DNA 1 52 -137 23 33 0 0 chr9 17910740 17910770 -124360674 + AT_rich Low_complexity Low_complexity 1 30 0 1673 199 0 10 chr9 17911996 17912297 -124359147 - AluJb SINE Alu -14 298 1 435 259 187 6 chr9 17913514 17913680 -124357764 - MIR SINE MIR -26 236 41 2010 125 50 73 chr9 17913795 17913988 -124357456 + MLT1B LTR MaLR 1 182 -208 1724 99 0 0 chr9 17913988 17914210 -124357234 + AluSg SINE Alu 2 223 -87 2010 125 50 73 chr9 17914210 17914415 -124357029 + MLT1B LTR MaLR 182 390 0 381 22 0 0 chr9 17915599 17915645 -124355799 + (CA)n Simple_repeat Simple_repeat 2 47 0 36 40 0 0 chr9 17917775 17917825 -124353619 + AT_rich Low_complexity Low_complexity 1 50 0 194 0 39 0 chr9 17919303 17919329 -124352115 + (TC)n Simple_repeat Simple_repeat 1 27 0 21 57 0 0 chr9 17919630 17919665 -124351779 + AT_rich Low_complexity Low_complexity 1 35 0 515 292 64 28 chr9 17919673 17919894 -124351550 - MIR SINE MIR 0 262 36 1134 155 0 22 chr9 17919908 17920089 -124351355 - AluJb SINE Alu -2 310 134 270 184 44 105 chr9 17920622 17920736 -124350708 + L2 LINE L2 3124 3230 -83 192 288 106 38 chr9 17920797 17920929 -124350515 + MIR SINE MIR 110 250 -12 182 313 0 48 chr9 17921068 17921151 -124350293 - MIR SINE MIR -49 213 135 22 0 0 0 chr9 17921277 17921299 -124350145 + AT_rich Low_complexity Low_complexity 1 22 0 1988 158 3 0 chr9 17921896 17922194 -124349250 - AluSx SINE Alu -13 299 1 2167 106 0 3 chr9 17922206 17922516 -124348928 - AluSg SINE Alu 0 309 1 22 0 0 0 chr9 17922591 17922613 -124348831 + AT_rich Low_complexity Low_complexity 1 22 0 1056 109 0 0 chr9 17922688 17922826 -124348618 + AluJo SINE Alu 4 141 -171 2254 108 0 7 chr9 17922896 17923201 -124348243 - AluSq SINE Alu -10 303 1 1468 184 32 11 chr9 17923241 17923518 -124347926 + AluJb SINE Alu 1 283 -29 1645 208 69 5 chr9 17924998 17925402 -124346042 + L1MB8 LINE L1 5748 6177 -1 210 71 0 0 chr9 17925711 17925739 -124345705 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 40 21 0 0 chr9 17930504 17930551 -124340893 + AT_rich Low_complexity Low_complexity 1 47 0 2208 97 3 0 chr9 17932209 17932498 -124338946 + AluSx SINE Alu 1 290 -22 450 200 17 35 chr9 17933934 17934049 -124337395 + MER96 DNA MER1_type? 62 174 -1 24 85 0 0 chr9 17936049 17936108 -124335336 + AT_rich Low_complexity Low_complexity 1 59 0 325 156 0 131 chr9 17937150 17937220 -124334224 + L1MB4 LINE L1 6075 6124 -56 1960 125 6 26 chr9 17937220 17937532 -124333912 + AluSx SINE Alu 1 306 -6 325 156 0 131 chr9 17937532 17937583 -124333861 + L1MB4 LINE L1 6124 6180 0 385 278 157 36 chr9 17937995 17938218 -124333226 - MIR SINE MIR -9 253 4 1165 161 0 6 chr9 17938487 17938667 -124332777 - AluJb SINE Alu -5 307 129 490 163 0 0 chr9 17938667 17938747 -124332697 - AluS SINE Alu -231 82 3 22 0 0 0 chr9 17939054 17939076 -124332368 + AT_rich Low_complexity Low_complexity 1 22 0 1107 154 28 93 chr9 17939076 17939235 -124332209 + THE1B LTR MaLR 3 142 -222 1834 110 3 98 chr9 17939235 17939563 -124331881 - AluSq SINE Alu -16 297 1 1107 154 28 93 chr9 17939563 17939650 -124331794 + THE1B LTR MaLR 142 233 -131 1508 178 47 25 chr9 17939665 17939941 -124331503 - AluJb SINE Alu -24 288 7 251 336 55 14 chr9 17940898 17941044 -124330400 + MIR SINE MIR 97 248 -14 628 78 0 0 chr9 17941054 17941144 -124330300 + LTR9B LTR ERV1 471 560 -84 23 54 0 0 chr9 17941193 17941230 -124330214 + AT_rich Low_complexity Low_complexity 1 37 0 858 152 8 0 chr9 17941230 17941362 -124330082 - FRAM SINE Alu -30 146 14 212 255 0 0 chr9 17941914 17941965 -124329479 - L2 LINE L2 -2 3311 3261 306 370 123 0 chr9 17945139 17945285 -124326159 - L2 LINE L2 -3 3269 3106 211 333 12 12 chr9 17945419 17945503 -124325941 + L2 LINE L2 3148 3231 -41 202 357 60 0 chr9 17946881 17946965 -124324479 + L2 LINE L2 3172 3260 -12 1639 126 18 57 chr9 17948244 17948577 -124322867 + MER33 DNA MER1_type 5 324 0 195 279 125 10 chr9 17948577 17948681 -124322763 + MIR3 SINE MIR 39 154 -54 198 0 0 0 chr9 17953233 17953255 -124318189 + (CA)n Simple_repeat Simple_repeat 2 23 0 1804 276 73 50 chr9 17956157 17956639 -124314805 - Tigger1 DNA MER2_type 0 2418 1926 463 125 25 25 chr9 17956628 17956708 -124314736 - Tigger1 DNA MER2_type -2337 81 2 * 21 0 0 0 chr9 17956774 17956795 -124314649 + AT_rich Low_complexity Low_complexity 1 21 0 230 264 66 11 chr9 17956966 17957057 -124314387 + L1ME LINE L1 5839 5934 -187 2293 92 3 0 chr9 17957323 17957616 -124313828 - AluSp SINE Alu -19 294 1 199 354 40 34 chr9 17958486 17958661 -124312783 - L2 LINE L2 -357 2957 2782 222 204 0 41 chr9 17958793 17958842 -124312602 - L2 LINE L2 -5 3267 3221 21 0 0 0 chr9 17960476 17960497 -124310947 + AT_rich Low_complexity Low_complexity 1 21 0 2395 91 0 0 chr9 17961080 17961378 -124310066 - AluY SINE Alu -13 298 1 21 0 0 0 chr9 17962012 17962033 -124309411 + AT_rich Low_complexity Low_complexity 1 21 0 2095 145 0 0 chr9 17962883 17963180 -124308264 - AluJo SINE Alu -15 297 1 29 28 0 0 chr9 17963498 17963534 -124307910 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr9 17964181 17964202 -124307242 + AT_rich Low_complexity Low_complexity 1 21 0 281 160 0 0 chr9 17964451 17964501 -124306943 - L1ME2 LINE L1 -9 6155 6106 29 0 0 0 chr9 17964985 17965014 -124306430 + AT_rich Low_complexity Low_complexity 1 29 0 863 222 65 48 chr9 17968602 17968850 -124302594 + MIR SINE MIR 1 252 -10 619 127 17 8 chr9 17969734 17969852 -124301592 + CT-rich Low_complexity Low_complexity 3 121 0 690 101 0 20 chr9 17970000 17970099 -124301345 + FRAM SINE Alu 62 158 -18 494 286 132 18 chr9 17972992 17973212 -124298232 + MIR SINE MIR 4 248 -14 1307 96 0 0 chr9 17973321 17973487 -124297957 + AluSg/x SINE Alu 134 299 -13 358 254 18 36 chr9 17973622 17973732 -124297712 - MER5B DNA MER1_type -3 175 68 21 0 0 0 chr9 17975488 17975509 -124295935 + AT_rich Low_complexity Low_complexity 1 21 0 392 303 92 37 chr9 17975744 17975962 -124295482 + MIR SINE MIR 33 262 0 1490 203 58 14 chr9 17976567 17976926 -124294518 + L1ME2 LINE L1 5790 6164 0 24 32 0 0 chr9 17980700 17980731 -124290713 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr9 17982052 17982073 -124289371 + AT_rich Low_complexity Low_complexity 1 21 0 829 196 106 5 chr9 17986159 17986358 -124285086 + MER20 DNA MER1_type 1 219 0 1653 159 9 45 chr9 17986665 17986998 -124284446 - L1MA10 LINE L1 -11 6323 6003 280 277 0 0 chr9 17989203 17989268 -124282176 + L2 LINE L2 3249 3313 0 1053 251 73 51 chr9 17989456 17989497 -124281947 + L2 LINE L2 2881 2920 -393 2272 92 7 0 chr9 17989497 17989790 -124281654 + AluSc SINE Alu 4 298 -11 1053 251 73 51 chr9 17989790 17990159 -124281285 + L2 LINE L2 2920 3300 -13 2255 94 3 0 chr9 17990337 17990635 -124280809 + AluSp SINE Alu 1 299 -14 320 285 99 41 chr9 17990817 17990843 -124280601 - MIR SINE MIR -31 231 208 1290 186 86 34 chr9 17990843 17991170 -124280274 - MER2 DNA MER2_type 0 344 1 320 285 99 41 chr9 17991170 17991328 -124280116 - MIR SINE MIR -54 208 33 249 262 19 78 chr9 17991418 17991521 -124279923 + MIR SINE MIR 47 143 -119 289 382 52 15 chr9 17992452 17992588 -124278856 + L3 LINE CR1 1007 1147 -430 2115 144 7 0 chr9 17992618 17992924 -124278520 + AluSx SINE Alu 1 308 -4 2143 98 10 10 chr9 17993295 17993592 -124277852 - AluSg SINE Alu -13 297 1 181 222 0 0 chr9 17993679 17993715 -124277729 + MIR3 SINE MIR 134 169 -39 202 65 22 43 chr9 17994857 17994903 -124276541 + (CAAAAA)n Simple_repeat Simple_repeat 2 46 0 2144 130 0 3 chr9 17995251 17995664 -124275780 + AluSq SINE Alu 1 412 0 395 91 0 15 chr9 17997223 17997289 -124274155 + (CA)n Simple_repeat Simple_repeat 1 65 0 286 318 28 9 chr9 17997916 17998023 -124273421 - L2 LINE L2 -17 3296 3188 236 298 65 57 chr9 17998149 17998273 -124273171 - L2 LINE L2 -3 3269 3145 440 227 134 0 chr9 17998341 17998438 -124273006 - FLAM_A SINE Alu -32 110 1 803 219 7 0 chr9 18000498 18000649 -124270795 - FRAM SINE Alu -30 146 1 2430 58 3 0 chr9 18002380 18002674 -124268770 + AluY SINE Alu 1 295 -16 204 40 0 0 chr9 18003608 18003633 -124267811 + (CA)n Simple_repeat Simple_repeat 2 26 0 1519 166 23 65 chr9 18005419 18005727 -124265717 - AluSx SINE Alu -17 295 1 258 281 57 0 chr9 18005848 18005949 -124265495 + MIR SINE MIR 74 185 -23 1689 103 64 57 chr9 18005949 18006231 -124265213 + AluSx SINE Alu 1 284 -28 214 226 0 19 chr9 18006442 18006495 -124264949 + (TA)n Simple_repeat Simple_repeat 1 52 0 2015 141 0 0 chr9 18007455 18007739 -124263705 + AluSx SINE Alu 1 284 -28 264 30 0 0 chr9 18007739 18007772 -124263672 + (CA)n Simple_repeat Simple_repeat 2 34 0 211 329 13 0 chr9 18008206 18008285 -124263159 + GA-rich Low_complexity Low_complexity 3 82 0 2092 81 61 10 chr9 18008432 18008728 -124262716 - AluSx SINE Alu -1 311 1 25 31 0 0 chr9 18009448 18009480 -124261964 + AT_rich Low_complexity Low_complexity 1 32 0 180 0 0 0 chr9 18010380 18010400 -124261044 + (TTG)n Simple_repeat Simple_repeat 2 21 0 21 36 0 0 chr9 18010557 18010585 -124260859 + AT_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chr9 18010721 18010752 -124260692 + AT_rich Low_complexity Low_complexity 1 31 0 660 288 116 13 chr9 18015266 18015499 -124255945 - MIR SINE MIR -1 261 5 224 324 162 0 chr9 18015970 18016075 -124255369 + L2 LINE L2 3174 3295 -18 541 302 56 22 chr9 18017143 18017322 -124254122 - MIR SINE MIR -31 231 47 21 0 0 0 chr9 18017362 18017383 -124254061 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 18018626 18018648 -124252796 + AT_rich Low_complexity Low_complexity 1 22 0 216 111 0 0 chr9 18019271 18019307 -124252137 + (CA)n Simple_repeat Simple_repeat 2 37 0 216 0 0 0 chr9 18019327 18019351 -124252093 + (A)n Simple_repeat Simple_repeat 1 24 0 1054 189 173 21 chr9 18020379 18020622 -124250822 + AluJo SINE Alu 5 284 -18 231 36 0 0 chr9 18020622 18020650 -124250794 + (CATA)n Simple_repeat Simple_repeat 2 29 0 269 159 0 0 chr9 18020670 18020714 -124250730 + Alu SINE Alu 250 293 -9 236 261 35 78 chr9 18021336 18021451 -124249993 - MIR SINE MIR -36 226 117 2376 108 0 0 chr9 18021665 18021972 -124249472 - AluY SINE Alu -4 307 1 2386 93 0 0 chr9 18021973 18022273 -124249171 - AluSx SINE Alu -11 301 2 426 261 128 20 chr9 18022508 18022703 -124248741 + MIR SINE MIR 20 235 -27 2310 100 7 0 chr9 18023012 18023313 -124248131 + AluSx SINE Alu 2 304 -8 565 264 58 17 chr9 18023552 18023726 -124247718 + MER5A DNA MER1_type 1 181 -8 539 204 0 19 chr9 18025452 18025560 -124245884 - FRAM SINE Alu -4 172 67 892 118 0 22 chr9 18025692 18025827 -124245617 - FLAM_C SINE Alu 0 143 12 212 356 63 51 chr9 18025841 18026172 -124245272 + L2 LINE L2 2155 2489 -825 218 341 11 44 chr9 18026763 18026854 -124244590 + L2 LINE L2 3185 3272 0 2013 102 49 0 chr9 18027243 18027527 -124243917 + AluSg SINE Alu 2 299 -11 1782 159 17 10 chr9 18027603 18027899 -124243545 + AluSx SINE Alu 1 298 -14 606 253 116 5 chr9 18028169 18028367 -124243077 + MER58A DNA MER1_type 4 223 -1 2326 71 0 10 chr9 18028572 18028868 -124242576 + AluSp SINE Alu 1 293 -20 21 57 0 0 chr9 18029130 18029165 -124242279 + AT_rich Low_complexity Low_complexity 1 35 0 222 37 0 0 chr9 18029274 18029301 -124242143 + (TTTTTG)n Simple_repeat Simple_repeat 3 29 0 411 272 51 10 chr9 18029852 18029996 -124241448 - MIR SINE MIR -45 163 8 1238 177 156 0 chr9 18030430 18030673 -124240771 + AluJo SINE Alu 1 281 -31 521 125 11 34 chr9 18030695 18030783 -124240661 - FRAM/FAM SINE Alu -98 78 1 1344 158 150 28 chr9 18030841 18031120 -124240324 + AluSx SINE Alu 1 310 0 213 243 81 14 chr9 18031534 18031608 -124239836 + MIR SINE MIR 117 195 -67 2181 105 10 0 chr9 18031826 18032121 -124239323 + AluSx SINE Alu 4 301 -11 450 325 101 5 chr9 18032885 18033073 -124238371 - MIR SINE MIR -4 258 53 23 33 0 0 chr9 18033459 18033489 -124237955 + AT_rich Low_complexity Low_complexity 1 30 0 27 0 0 0 chr9 18034844 18034871 -124236573 + AT_rich Low_complexity Low_complexity 1 27 0 198 0 0 0 chr9 18035297 18035319 -124236125 + (CCCCCA)n Simple_repeat Simple_repeat 5 26 0 2425 44 0 20 chr9 18037084 18037380 -124234064 + AluY SINE Alu 1 290 -21 2086 136 0 0 chr9 18037918 18038205 -124233239 - AluSx SINE Alu -25 287 1 215 357 10 23 chr9 18038824 18039028 -124232416 + GA-rich Low_complexity Low_complexity 1 201 0 207 0 0 0 chr9 18043709 18043732 -124227712 + (T)n Simple_repeat Simple_repeat 1 23 0 1475 190 3 28 chr9 18044055 18044344 -124227100 + AluJb SINE Alu 1 282 -30 1262 219 12 45 chr9 18045739 18046072 -124225372 + MER102b DNA MER1_type 1 322 -19 22 0 0 0 chr9 18052722 18052744 -124218700 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr9 18053366 18053387 -124218057 + AT_rich Low_complexity Low_complexity 1 21 0 297 0 0 0 chr9 18055481 18055514 -124215930 + (CA)n Simple_repeat Simple_repeat 1 33 0 267 31 0 0 chr9 18056249 18056281 -124215163 + (CA)n Simple_repeat Simple_repeat 2 33 0 24 0 0 0 chr9 18056818 18056842 -124214602 + AT_rich Low_complexity Low_complexity 1 24 0 192 97 0 0 chr9 18057381 18057412 -124214032 + (CGGG)n Simple_repeat Simple_repeat 3 33 0 224 208 0 0 chr9 18058190 18058238 -124213206 + CT-rich Low_complexity Low_complexity 1 48 0 186 136 0 76 chr9 18060232 18060298 -124211146 + (TCTCCC)n Simple_repeat Simple_repeat 4 64 0 21 36 0 0 chr9 18061041 18061069 -124210375 + AT_rich Low_complexity Low_complexity 1 28 0 210 118 0 0 chr9 18062423 18062457 -124208987 + (A)n Simple_repeat Simple_repeat 1 34 0 1236 110 0 0 chr9 18063999 18064163 -124207281 + AluSq SINE Alu 133 296 -17 189 0 0 0 chr9 18065662 18065683 -124205761 + (A)n Simple_repeat Simple_repeat 1 21 0 1991 121 3 25 chr9 18065755 18066069 -124205375 - AluSx SINE Alu -5 307 1 2004 105 0 0 chr9 18066217 18066475 -124204969 + AluSx SINE Alu 1 258 -54 201 147 0 0 chr9 18066480 18066514 -124204930 + (A)n Simple_repeat Simple_repeat 1 34 0 194 61 0 30 chr9 18066710 18066743 -124204701 + (TTA)n Simple_repeat Simple_repeat 2 33 0 2297 105 0 0 chr9 18066745 18067039 -124204405 - AluSg SINE Alu -16 294 1 2066 103 4 0 chr9 18067098 18067371 -124204073 - AluSp SINE Alu -39 274 1 674 150 9 18 chr9 18067381 18067494 -124203950 - FRAM SINE Alu -24 152 41 2606 62 7 0 chr9 18067506 18067815 -124203629 - AluY SINE Alu 0 311 1 464 167 0 12 chr9 18067815 18067899 -124203545 - AluJo/FLAM SINE Alu -182 130 48 535 230 66 20 chr9 18068055 18068251 -124203193 + L1ME3A LINE L1 5961 6165 -5 21 36 0 0 chr9 18068263 18068291 -124203153 + AT_rich Low_complexity Low_complexity 1 28 0 200 259 52 0 chr9 18069154 18069212 -124202232 - L2 LINE L2 -86 3227 3167 331 345 70 65 chr9 18069456 18069652 -124201792 - L2 LINE L2 -508 2806 2612 2002 132 0 10 chr9 18069652 18069940 -124201504 + AluSq SINE Alu 1 285 -28 331 345 70 65 chr9 18069940 18070187 -124201257 - L2 LINE L2 -702 2612 2361 2226 81 4 0 chr9 18071459 18071731 -124199713 + AluSp SINE Alu 23 295 -18 2362 103 0 0 chr9 18071944 18072245 -124199199 + AluSx SINE Alu 4 304 -8 2369 53 0 11 chr9 18074221 18074534 -124196910 - AluY SINE Alu 0 310 1 499 313 94 0 chr9 18075255 18075456 -124195988 + MIR SINE MIR 13 232 -30 247 287 13 80 chr9 18075505 18075655 -124195789 + Charlie8 DNA MER1_type 10 149 -2268 205 309 60 24 chr9 18076265 18076349 -124195095 - MIR3 SINE MIR -4 204 118 261 255 0 0 chr9 18076484 18076535 -124194909 - MER63 DNA MER1_type -27 1035 985 1838 136 3 7 chr9 18076617 18076904 -124194540 - AluSx SINE Alu -3 309 24 2109 86 4 4 chr9 18077005 18077274 -124194170 + AluY SINE Alu 27 295 -16 711 281 65 5 chr9 18077729 18077946 -124193498 - MIR SINE MIR -11 251 22 405 287 78 24 chr9 18078268 18078435 -124193009 + L1MC4a LINE L1 5773 5948 -1860 1860 157 3 31 chr9 18078532 18078851 -124192593 + AluJb SINE Alu 3 312 0 2171 106 13 0 chr9 18078862 18079163 -124192281 + AluSq SINE Alu 3 307 -6 243 0 0 0 chr9 18079221 18079248 -124192196 + (TA)n Simple_repeat Simple_repeat 2 28 0 25 31 0 0 chr9 18079249 18079281 -124192163 + AT_rich Low_complexity Low_complexity 1 32 0 1570 186 0 18 chr9 18079737 18080016 -124191428 + AluJb SINE Alu 26 299 -13 208 256 120 51 chr9 18080226 18080343 -124191101 + L2 LINE L2 3167 3291 -22 224 247 59 47 chr9 18081070 18081155 -124190289 + L2 LINE L2 3186 3271 -1 346 223 41 8 chr9 18081908 18082029 -124189415 + L1MC4 LINE L1 1995 6983 -1339 2141 98 25 0 chr9 18082047 18082333 -124189111 + AluSx SINE Alu 1 293 -19 2246 110 0 0 chr9 18084855 18085156 -124186288 - AluSx SINE Alu -11 301 1 359 301 102 19 chr9 18085839 18086095 -124185349 + L2 LINE L2 2150 2426 -888 304 284 91 40 chr9 18086110 18086286 -124185158 + LTR68 LTR ERV1 219 403 -337 266 308 91 41 chr9 18086599 18086820 -124184624 + L2 LINE L2 2461 2692 -622 2298 99 0 7 chr9 18087006 18087308 -124184136 + AluY SINE Alu 1 300 -11 254 143 333 0 chr9 18087397 18087481 -124183963 + L2 LINE L2 3199 3310 -3 1624 209 45 57 chr9 18088220 18088644 -124182800 - MLT1D LTR MaLR 0 505 87 1909 134 32 0 chr9 18088644 18088928 -124182516 - AluSg SINE Alu -17 293 1 1624 209 45 57 chr9 18088928 18089014 -124182430 - MLT1D LTR MaLR -418 87 1 2305 81 0 0 chr9 18090025 18090322 -124181122 - AluY SINE Alu -14 297 1 488 171 59 17 chr9 18090667 18090824 -124180620 + MER106B DNA MER1_type 57 223 -13 1845 164 6 16 chr9 18091260 18091572 -124179872 + AluJo SINE Alu 1 309 -3 255 237 66 13 chr9 18093232 18093308 -124178136 - MIR SINE MIR -98 164 85 1942 157 3 3 chr9 18093588 18093887 -124177557 + AluJb SINE Alu 1 299 -13 235 127 18 36 chr9 18095185 18095240 -124176204 + GA-rich Low_complexity Low_complexity 3 56 0 2623 33 0 3 chr9 18096083 18096386 -124175058 - AluY SINE Alu -8 303 2 516 235 71 38 chr9 18096813 18096996 -124174448 - L3b LINE CR1 -212 1371 1183 385 241 37 59 chr9 18098013 18098200 -124173244 - L1MC5 LINE L1 -61 7900 7718 2222 123 3 0 chr9 18098266 18098566 -124172878 - AluSq SINE Alu -12 301 1 392 273 31 23 chr9 18099511 18099639 -124171805 + L2 LINE L2 3167 3295 -18 281 303 50 30 chr9 18099647 18099800 -124171644 - MIR SINE MIR -59 149 46 376 291 184 20 chr9 18099883 18100079 -124171365 + MIR SINE MIR 20 247 -15 1296 131 5 41 chr9 18100967 18101188 -124170256 + AluJb SINE Alu 85 297 -15 1990 134 7 0 chr9 18101189 18101481 -124169963 + AluSx SINE Alu 1 294 -18 261 0 0 0 chr9 18104269 18104298 -124167146 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1875 149 0 3 chr9 18104301 18104583 -124166861 - AluSx SINE Alu -31 281 1 765 243 23 6 chr9 18105347 18105524 -124165920 + MER5A DNA MER1_type 1 180 -9 2051 110 3 3 chr9 18106450 18106740 -124164704 - AluSq SINE Alu -23 290 1 2303 89 0 3 chr9 18107144 18107435 -124164009 + AluSx SINE Alu 1 290 -22 26 0 0 0 chr9 18107435 18107461 -124163983 + AT_rich Low_complexity Low_complexity 1 26 0 186 43 0 0 chr9 18107461 18107484 -124163960 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2409 80 0 3 chr9 18107719 18108021 -124163423 + AluY SINE Alu 1 301 -10 482 234 91 53 chr9 18108075 18108472 -124162972 + L1ME4a LINE L1 5706 6117 -4 196 299 294 5 chr9 18108817 18109001 -124162443 - MIR SINE MIR -13 249 13 1339 155 39 113 chr9 18109310 18109620 -124161824 + AluJo SINE Alu 14 300 -12 1379 147 63 98 chr9 18109900 18110255 -124161189 + L1MB8 LINE L1 5753 6119 -59 2633 55 0 0 chr9 18110255 18110566 -124160878 + AluY SINE Alu 1 311 0 1379 147 63 98 chr9 18110566 18110592 -124160852 + L1MB8 LINE L1 6119 6144 -34 2222 93 0 0 chr9 18110592 18110883 -124160561 + AluSc SINE Alu 1 291 -18 1379 147 63 98 chr9 18110883 18110941 -124160503 + L1MB8 LINE L1 6144 6178 0 1709 132 4 4 chr9 18111654 18111912 -124159532 - AluSx SINE Alu -23 289 32 246 256 48 76 chr9 18111913 18112202 -124159242 + L1ME4a LINE L1 5653 5933 -188 2138 109 0 0 chr9 18112305 18112619 -124158825 + AluSc SINE Alu 1 314 0 372 329 43 101 chr9 18112795 18113190 -124158254 + L2 LINE L2 2901 3272 0 23 33 0 0 chr9 18114188 18114218 -124157226 + AT_rich Low_complexity Low_complexity 1 30 0 313 271 127 8 chr9 18114449 18114567 -124156877 - L2 LINE L2 -40 3232 3101 197 65 32 0 chr9 18114618 18114649 -124156795 + (CTA)n Simple_repeat Simple_repeat 1 32 0 1800 140 31 10 chr9 18115697 18115989 -124155455 - AluSx SINE Alu -14 298 1 432 141 0 65 chr9 18116047 18116139 -124155305 + AluS SINE Alu 222 307 -4 331 169 0 15 chr9 18116146 18116211 -124155233 - MER69 DNA AcHobo -2397 129 66 2255 112 0 0 chr9 18118305 18118608 -124152836 - AluSx SINE Alu -9 303 1 1824 150 0 0 chr9 18118972 18119246 -124152198 + AluSx SINE Alu 37 310 -2 377 239 113 0 chr9 18119287 18119429 -124152015 + L1ME4a LINE L1 5964 6121 0 302 231 133 49 chr9 18119991 18120134 -124151310 + MIR SINE MIR 30 184 -78 245 297 80 29 chr9 18121009 18121147 -124150297 + MER117 DNA MER1_type 15 159 -38 215 356 135 10 chr9 18121221 18121325 -124150119 - MIR SINE MIR -56 152 36 * 244 314 82 25 chr9 18121294 18121453 -124149991 + MIR SINE MIR 83 250 -12 348 148 0 45 chr9 18121867 18121955 -124149489 + (TTTCC)n Simple_repeat Simple_repeat 1 84 0 911 98 0 0 chr9 18121955 18122077 -124149367 - AluY SINE Alu -6 305 184 427 240 0 10 chr9 18124195 18124299 -124147145 + MLT1L LTR MaLR 152 254 -361 2089 53 0 109 chr9 18124548 18124886 -124146558 + AluY SINE Alu 1 301 0 487 191 148 26 chr9 18124946 18125061 -124146383 + FLAM_A SINE Alu 1 129 -4 635 291 82 10 chr9 18126201 18126407 -124145037 + MIR SINE MIR 35 255 -7 1722 190 3 7 chr9 18126425 18126725 -124144719 - AluJb SINE Alu -13 299 1 233 299 41 10 chr9 18126742 18126839 -124144605 - MIR SINE MIR -50 212 113 2867 212 158 35 chr9 18127061 18127184 -124144260 + Tigger6a DNA MER2_type 1 108 -1489 2549 57 0 0 chr9 18127184 18127481 -124143963 + AluY SINE Alu 1 297 -14 2867 212 158 35 chr9 18127481 18128248 -124143196 + Tigger6a DNA MER2_type 108 1020 -577 2314 69 10 3 chr9 18128248 18128536 -124142908 + AluY SINE Alu 1 290 -21 2867 212 158 35 chr9 18128536 18128609 -124142835 + Tigger6a DNA MER2_type 1020 1083 0 234 340 110 0 chr9 18128609 18128709 -124142735 - L2 LINE L2 -18 3295 3185 233 213 0 21 chr9 18128691 18128738 -124142706 - L2 LINE L2 -3 3269 3224 * 1152 221 56 9 chr9 18129156 18129477 -124141967 - L1ME1 LINE L1 0 6166 5831 406 163 0 58 chr9 18130870 18130956 -124140488 - AluJ/FRAM SINE Alu -2 300 220 697 154 0 0 chr9 18130962 18131066 -124140378 - AluJb SINE Alu -208 104 1 243 125 0 0 chr9 18131514 18131554 -124139890 + (TG)n Simple_repeat Simple_repeat 1 40 0 2341 92 0 3 chr9 18131633 18131938 -124139506 + AluSp SINE Alu 2 305 -8 2376 85 0 0 chr9 18132186 18132479 -124138965 - AluSg SINE Alu -17 293 1 597 276 148 0 chr9 18132810 18133027 -124138417 + MIR SINE MIR 3 251 -11 209 295 92 75 chr9 18234804 18235127 -124036317 + L2 LINE L2 2714 3056 -257 281 321 102 7 chr9 18235491 18235628 -124035816 + MIR SINE MIR 20 169 -93 415 259 29 72 chr9 18235713 18235852 -124035592 + L2 LINE L2 3181 3313 0 459 211 45 38 chr9 18236296 18236429 -124035015 - MIR SINE MIR -6 256 123 2076 106 0 13 chr9 18236464 18236765 -124034679 + AluSx SINE Alu 1 297 -15 2150 106 0 0 chr9 18238271 18238572 -124032872 + AluSg SINE Alu 1 301 -9 196 314 0 14 chr9 18238622 18238692 -124032752 + L2 LINE L2 3245 3313 0 667 120 0 0 chr9 18238898 18238990 -124032454 + AluSp/q SINE Alu 206 297 -16 2081 100 3 23 chr9 18239320 18239621 -124031823 + AluSp SINE Alu 1 295 -18 216 288 65 33 chr9 18239825 18239978 -124031466 - L2 LINE L2 -8 3305 3148 265 188 125 104 chr9 18240945 18241089 -124030355 - MER117 DNA MER1_type -49 148 2 233 301 68 60 chr9 18241108 18241241 -124030203 - MIR SINE MIR -105 157 24 418 272 88 72 chr9 18242207 18242457 -124028987 - MIR SINE MIR -4 258 5 2132 101 7 3 chr9 18242858 18243156 -124028288 - AluSq SINE Alu -14 299 1 752 200 69 6 chr9 18243501 18243676 -124027768 + L1MB7 LINE L1 5958 6143 -41 400 243 12 20 chr9 18243675 18243793 -124027651 + L1MC4 LINE L1 7850 8028 -14 * 1255 142 49 24 chr9 18243793 18244039 -124027405 - AluSx SINE Alu 0 312 61 816 148 21 7 chr9 18244086 18244228 -124027216 + AluJb SINE Alu 161 304 -8 1986 129 3 0 chr9 18244228 18244522 -124026922 + AluSp SINE Alu 1 295 -18 4336 124 8 58 chr9 18244572 18245296 -124026148 + LTR12 LTR ERV1 1 688 0 181 260 80 67 chr9 18245880 18246030 -124025414 - L2 LINE L2 -47 3266 3115 2138 71 13 42 chr9 18246177 18246486 -124024958 + AluY SINE Alu 1 300 -11 192 358 128 0 chr9 18246504 18246652 -124024792 + MIR SINE MIR 80 246 -16 308 246 15 0 chr9 18246905 18246970 -124024474 - L2 LINE L2 0 3272 3207 1775 151 0 3 chr9 18247040 18247325 -124024119 + AluSx SINE Alu 1 284 -28 2176 184 174 16 chr9 18247684 18248229 -124023215 + MER99 DNA DNA 194 824 -4 1133 284 98 22 chr9 18248252 18248699 -124022745 - MLT1L LTR MaLR -2 613 133 2102 106 0 13 chr9 18248760 18249062 -124022382 - AluSx SINE Alu -14 298 1 280 182 140 91 chr9 18249076 18249106 -124022338 - Charlie1b DNA MER1_type -2279 482 455 2094 105 3 0 chr9 18249106 18249400 -124022044 - AluSp SINE Alu -13 300 6 280 182 140 91 chr9 18249400 18249512 -124021932 - Charlie1b DNA MER1_type -2306 455 333 1787 210 113 18 chr9 18249513 18249955 -124021489 + MLT1D LTR MaLR 1 484 -21 8437 114 103 77 chr9 18249955 18251608 -124019836 + pTR5 LTR ERV1 743 2438 0 1327 220 34 17 chr9 18251655 18251672 -124019772 - Charlie1b DNA MER1_type -2465 296 281 1948 116 21 0 chr9 18251672 18251956 -124019488 + AluSx SINE Alu 6 295 -17 1327 220 34 17 chr9 18251956 18252229 -124019215 - Charlie1b DNA MER1_type -2480 281 1 758 315 83 27 chr9 18252359 18252439 -124019005 - L2 LINE L2 -1 3312 3238 3121 129 32 66 chr9 18252439 18252680 -124018764 - MER6A DNA MER2_type -264 601 353 2172 93 3 10 chr9 18252680 18252980 -124018464 - AluSx SINE Alu -14 298 1 3121 129 32 66 chr9 18252980 18253358 -124018086 - MER6A DNA MER2_type -512 353 3 758 315 83 27 chr9 18253358 18253799 -124017645 - L2 LINE L2 -75 3238 2761 21 0 0 0 chr9 18254444 18254465 -124016979 + AT_rich Low_complexity Low_complexity 1 21 0 2305 72 10 3 chr9 18254763 18255067 -124016377 - AluSx SINE Alu -6 306 1 180 0 0 0 chr9 18255264 18255284 -124016160 + (TC)n Simple_repeat Simple_repeat 1 20 0 23 0 0 0 chr9 18256261 18256284 -124015160 + GC_rich Low_complexity Low_complexity 1 23 0 206 200 83 0 chr9 18256725 18256785 -124014659 + G-rich Low_complexity Low_complexity 3 67 0 27 81 0 0 chr9 18256976 18257038 -124014406 + GC_rich Low_complexity Low_complexity 1 62 0 712 127 9 9 chr9 18258174 18258284 -124013160 + AluSg/x SINE Alu 194 303 -9 222 37 0 0 chr9 18258488 18258515 -124012929 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 1981 106 3 3 chr9 18258517 18258800 -124012644 - AluSx SINE Alu -29 283 1 2139 95 37 10 chr9 18259006 18259300 -124012144 - AluY SINE Alu -8 303 2 2308 155 28 0 chr9 18259675 18260029 -124011415 - THE1B LTR MaLR 0 364 1 1050 129 12 6 chr9 18260054 18260217 -124011227 - AluSc SINE Alu -10 299 136 346 307 44 9 chr9 18260810 18260924 -124010520 + L2 LINE L2 3155 3272 0 221 305 76 66 chr9 18261817 18262014 -124009430 + MIR SINE MIR 43 241 -21 207 297 40 0 chr9 18262048 18262122 -124009322 - MIR SINE MIR -105 157 81 2334 89 0 0 chr9 18262342 18262646 -124008798 + AluY SINE Alu 1 304 -7 2565 118 22 0 chr9 18262718 18263074 -124008370 + THE1B LTR MaLR 1 364 0 1138 131 51 70 chr9 18263889 18264103 -124007341 - AluSg/x SINE Alu -3 309 100 672 130 22 0 chr9 18264212 18264304 -124007140 - AluJ/FLAM SINE Alu -217 95 2 965 206 22 5 chr9 18264529 18264713 -124006731 - MER5A DNA MER1_type -2 187 1 2782 92 3 24 chr9 18265302 18265673 -124005771 - THE1B LTR MaLR 0 364 2 2141 121 10 0 chr9 18265703 18266001 -124005443 - AluSq SINE Alu -12 301 1 2093 130 3 0 chr9 18266219 18266520 -124004924 - AluSc SINE Alu -7 302 1 2265 64 54 10 chr9 18266797 18267095 -124004349 + AluY SINE Alu 1 311 0 2411 60 17 0 chr9 18268271 18268569 -124002875 + AluY SINE Alu 1 303 -8 709 168 9 0 chr9 18268893 18269000 -124002444 + FLAM_A SINE Alu 12 119 -23 2027 91 31 18 chr9 18269003 18269289 -124002155 + AluSx SINE Alu 16 305 -7 25 31 0 0 chr9 18269289 18269321 -124002123 + AT_rich Low_complexity Low_complexity 1 32 0 2278 112 3 0 chr9 18269331 18269643 -124001801 + AluSp SINE Alu 1 313 0 2146 95 0 16 chr9 18269648 18269954 -124001490 + AluY SINE Alu 1 301 -10 2441 64 0 0 chr9 18269980 18270276 -124001168 + AluY SINE Alu 1 296 -15 288 111 0 0 chr9 18270907 18270952 -124000492 + (TG)n Simple_repeat Simple_repeat 2 46 0 22 0 0 0 chr9 18271522 18271544 -123999900 + AT_rich Low_complexity Low_complexity 1 22 0 208 254 0 18 chr9 18272529 18272584 -123998860 + (TATG)n Simple_repeat Simple_repeat 3 56 0 202 274 0 0 chr9 18272761 18272812 -123998632 + L2 LINE L2 2918 2968 -304 2785 89 19 8 chr9 18272921 18273281 -123998163 - THE1B LTR MaLR 0 364 1 370 163 76 54 chr9 18273405 18273497 -123997947 + MER93b LTR ERV1 1 94 -279 266 244 22 33 chr9 18273626 18273716 -123997728 - L2 LINE L2 -5 3308 3220 2257 123 0 0 chr9 18273779 18274087 -123997357 + AluSq SINE Alu 2 309 -4 710 299 63 61 chr9 18274700 18275162 -123996282 - LTR33 LTR ERVL 0 521 59 988 149 10 55 chr9 18275327 18275528 -123995916 + MIR SINE MIR 70 261 -1 1131 137 24 161 chr9 18275659 18275863 -123995581 - MER33 DNA MER1_type -2262 323 191 2220 117 7 0 chr9 18275863 18276163 -123995281 - AluSq SINE Alu -11 302 1 1131 137 24 161 chr9 18276163 18276330 -123995114 - MER33 DNA MER1_type -2394 191 3 795 176 15 8 chr9 18276618 18276749 -123994695 + FLAM_C SINE Alu 2 133 0 606 133 0 0 chr9 18276891 18276974 -123994470 + AluSg/x SINE Alu 213 295 -15 2018 141 7 0 chr9 18277050 18277349 -123994095 - AluSx SINE Alu -11 301 1 1435 148 0 59 chr9 18277524 18277780 -123993664 + AluJo SINE Alu 69 309 -3 2283 89 0 3 chr9 18278117 18278408 -123993036 - AluSc SINE Alu -19 290 1 635 300 75 43 chr9 18278408 18278781 -123992663 + MLT1K LTR MaLR 182 566 -22 1699 157 71 40 chr9 18279020 18279371 -123992073 - THE1C LTR MaLR -8 367 6 423 83 0 0 chr9 18279371 18279431 -123992013 + (TCTG)n Simple_repeat Simple_repeat 3 62 0 1158 108 0 0 chr9 18279432 18279590 -123991854 + AluY SINE Alu 140 297 -14 282 344 72 62 chr9 18279672 18279963 -123991481 + L2 LINE L2 2961 3254 -18 1934 240 76 12 chr9 18280164 18280648 -123990796 - LTR40a LTR ERVL 0 519 5 210 319 69 58 chr9 18280701 18281021 -123990423 - L2 LINE L2 -236 3036 2687 2371 88 0 3 chr9 18281149 18281454 -123989990 - AluY SINE Alu -7 304 1 2281 98 7 0 chr9 18281576 18281872 -123989572 - AluSc SINE Alu -11 298 1 441 289 17 17 chr9 18281924 18282097 -123989347 + MER117 DNA MER1_type 7 179 -18 21 0 0 0 chr9 18282708 18282729 -123988715 + AT_rich Low_complexity Low_complexity 1 21 0 4318 175 67 9 chr9 18283192 18283933 -123987511 + L1 LINE L1 2552 3363 -2783 1669 168 83 46 chr9 18283933 18284260 -123987184 - MER44D DNA MER2_type 0 609 1 4318 175 67 9 chr9 18284260 18284483 -123986961 + L1 LINE L1 3363 3572 -2574 1195 44 0 0 chr9 18284483 18284618 -123986826 + AluY SINE Alu 1 135 -176 2328 78 10 0 chr9 18284958 18285252 -123986192 - AluSx SINE Alu -15 297 1 2288 104 10 0 chr9 18285346 18285645 -123985799 - AluY SINE Alu -9 302 1 779 181 15 15 chr9 18285946 18286079 -123985365 - FLAM_A SINE Alu 0 133 1 198 167 0 0 chr9 18286646 18286682 -123984762 + (CA)n Simple_repeat Simple_repeat 1 36 0 768 148 48 91 chr9 18286700 18286909 -123984535 + pTR5 LTR ERV1 742 941 -1497 4877 142 21 63 chr9 18287067 18287925 -123983519 + LTR12 LTR ERV1 5 826 0 2168 84 52 7 chr9 18288095 18288382 -123983062 - AluY SINE Alu -11 300 1 713 204 17 41 chr9 18288524 18288696 -123982748 + MER45A DNA AcHobo 1 168 -10 319 330 28 22 chr9 18289293 18289475 -123981969 + MIR SINE MIR 80 262 0 190 333 0 0 chr9 18289531 18289594 -123981850 + MIR SINE MIR 81 143 -119 2157 113 0 3 chr9 18289670 18289972 -123981472 - AluSq SINE Alu -12 301 1 776 99 0 0 chr9 18290068 18290169 -123981275 - AluY SINE Alu -7 304 204 298 358 25 8 chr9 18290297 18290417 -123981027 - MIR SINE MIR -121 141 20 1991 124 3 17 chr9 18290508 18290806 -123980638 - AluSx SINE Alu -18 294 1 490 169 0 0 chr9 18291197 18291274 -123980170 + FLAM SINE Alu 48 124 -19 2457 65 13 3 chr9 18291658 18291967 -123979477 - AluSx SINE Alu 0 312 1 293 321 74 32 chr9 18292014 18292204 -123979240 - MER20 DNA MER1_type -17 202 5 2409 87 0 0 chr9 18292612 18292921 -123978523 + AluY SINE Alu 1 309 -2 2189 63 35 3 chr9 18293042 18293329 -123978115 + AluY SINE Alu 3 298 -13 24 0 0 0 chr9 18294470 18294494 -123976950 + AT_rich Low_complexity Low_complexity 1 24 0 27 0 0 0 chr9 18294568 18294595 -123976849 + GC_rich Low_complexity Low_complexity 1 27 0 2462 81 0 10 chr9 18295913 18296223 -123975221 + AluY SINE Alu 1 307 -4 539 327 61 70 chr9 18296534 18296990 -123974454 + L2 LINE L2 2845 3296 -17 188 139 0 23 chr9 18297001 18297044 -123974400 + (TA)n Simple_repeat Simple_repeat 1 42 0 477 257 68 20 chr9 18298144 18298292 -123973152 + MIR SINE MIR 58 212 -50 411 119 45 0 chr9 18298391 18298479 -123972965 - AluJo SINE Alu 0 314 224 1021 156 0 56 chr9 18298479 18298658 -123972786 - AluJo SINE Alu -142 170 2 650 171 9 0 chr9 18299112 18299217 -123972227 + FLAM_C SINE Alu 2 107 -36 198 0 0 0 chr9 18302032 18302054 -123969390 + (T)n Simple_repeat Simple_repeat 1 22 0 2124 107 0 33 chr9 18305015 18305315 -123966129 - AluSx SINE Alu -22 290 1 2382 91 0 0 chr9 18305505 18305802 -123965642 + AluSg SINE Alu 1 297 -13 3186 171 36 85 chr9 18306402 18306709 -123964735 - L1M3 LINE L1 -377 5803 5483 2269 87 3 0 chr9 18306709 18307008 -123964436 - AluY SINE Alu -11 300 1 3186 171 36 85 chr9 18307008 18307334 -123964110 - L1M3 LINE L1 -697 5483 5143 1535 186 27 24 chr9 18307334 18307513 -123963931 - AluJo SINE Alu -9 303 121 189 0 0 0 chr9 18307513 18307534 -123963910 + (TA)n Simple_repeat Simple_repeat 2 22 0 1535 186 27 24 chr9 18307534 18307649 -123963795 - AluJo SINE Alu -191 121 8 3186 171 36 85 chr9 18307649 18307665 -123963779 - L1M3 LINE L1 -1037 5143 5128 1978 121 28 10 chr9 18307665 18307955 -123963489 - AluSx SINE Alu -17 295 1 3186 171 36 85 chr9 18307955 18308513 -123962931 - L1M3 LINE L1 -1052 5128 4664 4341 167 34 37 chr9 18308537 18308582 -123962862 - L1MB2 LINE L1 -3 6168 6124 2076 112 7 10 chr9 18308582 18308877 -123962567 - AluSx SINE Alu -18 294 1 4341 167 34 37 chr9 18308877 18309841 -123961603 - L1MB2 LINE L1 -47 6124 5167 2516 64 0 6 chr9 18309841 18310153 -123961291 - AluY SINE Alu -1 310 1 4341 167 34 37 chr9 18310153 18310207 -123961237 - L1MB2 LINE L1 -1004 5167 5114 2142 107 16 13 chr9 18311210 18311520 -123959924 - AluSx SINE Alu -1 311 1 829 194 0 8 chr9 18312143 18312277 -123959167 + FLAM_A SINE Alu 1 133 0 234 0 0 0 chr9 18312412 18312438 -123959006 + (TG)n Simple_repeat Simple_repeat 1 26 0 2378 55 0 36 chr9 18312868 18313175 -123958269 + AluY SINE Alu 1 296 -15 1942 147 0 3 chr9 18314825 18315131 -123956313 - AluSx SINE Alu 0 305 1 1775 139 45 7 chr9 18315292 18315580 -123955864 - AluJb SINE Alu -13 299 1 734 313 109 25 chr9 18315669 18316220 -123955224 + L2 LINE L2 2722 3313 0 244 316 11 21 chr9 18316369 18316464 -123954980 + Charlie7 DNA MER1_type 2 95 -2517 838 188 0 0 chr9 18316592 18316725 -123954719 - AluJo/FRAM SINE Alu -7 305 173 584 214 0 0 chr9 18316726 18316824 -123954620 - AluJ/FLAM SINE Alu -213 99 2 469 286 16 8 chr9 18316851 18316977 -123954467 - MARNA DNA Mariner -368 218 92 2399 101 0 0 chr9 18317755 18318061 -123953383 + AluSx SINE Alu 1 306 -6 1485 175 103 12 chr9 18318338 18318669 -123952775 - MER46B DNA MER2_type 0 236 1 432 151 0 0 chr9 18319017 18319090 -123952354 - AluS SINE Alu -236 74 2 1931 120 53 0 chr9 18319121 18319404 -123952040 + AluSg SINE Alu 1 298 -12 270 295 32 109 chr9 18319879 18319933 -123951511 + L2 LINE L2 3129 3186 -86 297 0 0 0 chr9 18319933 18319966 -123951478 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 2285 31 0 4 chr9 18319972 18320228 -123951216 - L1PA5 LINE L1 -7 6147 5893 270 295 32 109 chr9 18320228 18320322 -123951122 + L2 LINE L2 3191 3272 0 2205 115 0 0 chr9 18320611 18320899 -123950545 - AluSx SINE Alu -24 288 1 2555 74 0 0 chr9 18320921 18321232 -123950212 - AluY SINE Alu 0 311 1 189 0 0 0 chr9 18321269 18321290 -123950154 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 436 279 130 33 chr9 18321541 18321756 -123949688 + MLT1J2 LTR MaLR 196 431 -19 2266 105 7 0 chr9 18322932 18323298 -123948146 - AluSg SINE Alu 0 368 1 2523 74 0 0 chr9 18323419 18323729 -123947715 - AluSg SINE Alu 0 310 1 896 266 11 25 chr9 18323731 18324009 -123947435 - MLT1H LTR MaLR -239 310 37 3605 163 42 3 chr9 18324009 18324629 -123946815 + LTR48B LTR ERV1 1 644 0 2127 108 0 7 chr9 18324794 18325104 -123946340 - AluSp SINE Alu 0 308 1 1526 180 35 31 chr9 18325138 18325267 -123946177 + AluJo SINE Alu 1 128 -184 243 0 0 0 chr9 18325267 18325294 -123946150 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1526 180 35 31 chr9 18325294 18325453 -123945991 + AluJo SINE Alu 128 290 -22 1474 239 103 7 chr9 18325525 18325981 -123945463 - L1MC4a LINE L1 -1830 5978 5479 181 302 0 0 chr9 18326141 18326184 -123945260 - MIR SINE MIR -160 102 60 1804 159 8 42 chr9 18326241 18326411 -123945033 - L1MB3 LINE L1 -8 6175 6022 2265 79 21 3 chr9 18326411 18326702 -123944742 + AluSp SINE Alu 2 297 -16 1804 159 8 42 chr9 18326702 18326884 -123944560 - L1MB3 LINE L1 -161 6022 5835 344 178 133 11 chr9 18326890 18326980 -123944464 - L1MC4a LINE L1 -738 5436 5336 773 173 27 79 chr9 18326995 18327077 -123944367 + MLT1A1 LTR MaLR 1 86 -279 1950 148 3 0 chr9 18327077 18327393 -123944051 + AluSx SINE Alu 1 317 0 773 173 27 79 chr9 18327393 18327557 -123943887 + MLT1A1 LTR MaLR 86 298 -67 2226 98 0 20 chr9 18327557 18327863 -123943581 + AluSq SINE Alu 2 301 -12 773 173 27 79 chr9 18327863 18327928 -123943516 + MLT1A1 LTR MaLR 298 365 0 221 348 37 22 chr9 18328247 18328382 -123943062 + L2 LINE L2 2637 2773 -541 1386 203 174 9 chr9 18328417 18328757 -123942687 + MSTD LTR MaLR 1 396 0 1155 130 0 0 chr9 18328882 18329044 -123942400 + AluSx SINE Alu 1 162 -150 23 0 0 0 chr9 18329181 18329204 -123942240 + AT_rich Low_complexity Low_complexity 1 23 0 227 287 194 8 chr9 18329581 18329710 -123941734 - MIR3 SINE MIR -23 185 33 689 263 114 73 chr9 18329875 18330373 -123941071 - MLT1L LTR MaLR -93 495 6 2099 85 3 65 chr9 18330427 18330734 -123940710 + AluSp SINE Alu 1 288 -25 193 272 54 22 chr9 18331603 18331695 -123939749 + MIR SINE MIR 153 247 -15 4001 188 23 55 chr9 18332157 18332223 -123939221 + L1MB7 LINE L1 4596 4663 -1521 1026 153 6 12 chr9 18332223 18332386 -123939058 + FRAM SINE Alu 1 162 -4 4001 188 23 55 chr9 18332386 18333069 -123938375 + L1MB7 LINE L1 4663 5367 -817 2188 107 0 3 chr9 18333069 18333367 -123938077 + AluSq SINE Alu 1 297 -16 4001 188 23 55 chr9 18333367 18333740 -123937704 + L1MB7 LINE L1 5367 5751 -433 681 221 0 8 chr9 18333740 18333862 -123937582 + FLAM_A SINE Alu 1 121 -12 4001 188 23 55 chr9 18333862 18334377 -123937067 + L1MB7 LINE L1 5751 6184 0 22 0 0 0 chr9 18334764 18334786 -123936658 + AT_rich Low_complexity Low_complexity 1 22 0 550 281 166 5 chr9 18335996 18336213 -123935231 - MIR SINE MIR -9 253 2 392 204 9 56 chr9 18336227 18336335 -123935109 - L1ME LINE L1 -302 5819 5717 3213 209 135 14 chr9 18336372 18336610 -123934834 - L1ME LINE L1 -756 5390 5182 2170 123 3 0 chr9 18336610 18336918 -123934526 - AluSc SINE Alu 0 309 1 3213 209 135 14 chr9 18336918 18337587 -123933857 - L1ME LINE L1 -964 5182 4404 225 248 20 50 chr9 18337981 18338082 -123933362 - MLT1J2 LTR MaLR -2 448 351 285 214 165 29 chr9 18338208 18338311 -123933133 - MLT1J LTR MaLR -275 212 59 615 215 133 0 chr9 18338418 18338574 -123932870 - MER5A DNA MER1_type -6 183 4 2488 70 0 6 chr9 18339011 18339324 -123932120 + AluY SINE Alu 1 311 0 1918 114 4 4 chr9 18339485 18339757 -123931687 + AluSc SINE Alu 37 308 -1 1436 174 56 10 chr9 18339799 18340087 -123931357 + L1MB1 LINE L1 4817 5117 -1029 4128 159 16 39 chr9 18340088 18340146 -123931298 + L1MB1 LINE L1 5443 5501 -667 1807 170 0 19 chr9 18340146 18340458 -123930986 + AluJo SINE Alu 1 306 -6 4128 159 16 39 chr9 18340458 18340757 -123930687 + L1MB1 LINE L1 5501 5805 -363 2604 52 0 3 chr9 18340757 18341064 -123930380 + AluY SINE Alu 1 306 -5 4128 159 16 39 chr9 18341064 18341117 -123930327 + L1MB1 LINE L1 5805 5858 -310 1977 125 3 10 chr9 18341117 18341420 -123930024 + AluSx SINE Alu 1 301 -11 4128 159 16 39 chr9 18341420 18341749 -123929695 + L1MB1 LINE L1 5858 6167 -1 2252 91 50 0 chr9 18341785 18342082 -123929362 + AluSx SINE Alu 1 312 0 2284 70 0 3 chr9 18342504 18342817 -123928627 - AluY SINE Alu 0 312 1 6635 83 7 0 chr9 18343714 18344595 -123926849 + L1PA13 LINE L1 5277 6163 0 2369 87 7 0 chr9 18344597 18344906 -123926538 + AluY SINE Alu 1 311 0 579 100 0 20 chr9 18344907 18345007 -123926437 + (GGAA)n Simple_repeat Simple_repeat 2 99 0 7573 152 35 11 chr9 18345017 18346365 -123925079 - L1 LINE L1 -1183 4963 3649 983 84 36 6 chr9 18346365 18346532 -123924912 + CT-rich Low_complexity Low_complexity 1 172 0 2007 133 3 3 chr9 18346535 18346835 -123924609 - AluSq SINE Alu -9 304 5 7573 152 35 11 chr9 18346835 18346862 -123924582 - L1 LINE L1 -2498 3648 3623 2568 52 10 0 chr9 18346862 18347170 -123924274 - AluY SINE Alu 0 311 1 271 63 0 175 chr9 18347312 18347348 -123924096 + MER53 DNA DNA 1 23 -166 1964 161 39 6 chr9 18347348 18347683 -123923761 + L1MC1 LINE L1 5988 6333 0 271 63 0 175 chr9 18347683 18347709 -123923735 + MER53 DNA DNA 23 52 -137 1331 171 105 8 chr9 18347759 18348016 -123923428 - AluJb SINE Alu -30 282 1 640 148 109 0 chr9 18348018 18348146 -123923298 + MER53 DNA DNA 45 186 -3 187 254 146 0 chr9 18348254 18348309 -123923135 + L2 LINE L2 3251 3313 0 2172 100 3 3 chr9 18348579 18348868 -123922576 + AluSx SINE Alu 1 289 -23 431 45 120 0 chr9 18348868 18349001 -123922443 + (TA)n Simple_repeat Simple_repeat 2 150 0 1379 176 3 107 chr9 18349186 18349412 -123922032 + L1M4 LINE L1 4520 4768 -1378 264 30 0 0 chr9 18349412 18349445 -123921999 + (TTAA)n Simple_repeat Simple_repeat 1 33 0 1792 130 7 47 chr9 18349454 18349753 -123921691 - AluSq SINE Alu -26 287 1 1379 176 3 107 chr9 18349753 18349880 -123921564 + L1M4 LINE L1 4776 4845 -1301 3656 155 85 79 chr9 18349960 18350780 -123920664 + MER21B LTR ERV1 13 837 -26 2966 228 39 34 chr9 18350781 18351037 -123920407 - L1M4 LINE L1 -386 5735 5482 2060 116 24 0 chr9 18351037 18351329 -123920115 - AluSq SINE Alu -14 299 1 2966 228 39 34 chr9 18351329 18351990 -123919454 - L1M4 LINE L1 -639 5482 3527 2254 87 3 50 chr9 18352148 18352471 -123918973 + AluY SINE Alu 1 308 -3 2087 150 3 10 chr9 18352645 18352958 -123918486 - AluSx SINE Alu -1 311 1 2189 104 0 13 chr9 18352995 18353294 -123918150 - AluSc SINE Alu -14 295 1 203 156 0 0 chr9 18354337 18354369 -123917075 + (TG)n Simple_repeat Simple_repeat 1 32 0 23 0 0 0 chr9 18354464 18354487 -123916957 + AT_rich Low_complexity Low_complexity 1 23 0 2349 60 0 0 chr9 18355124 18355451 -123915993 - AluY SINE Alu 0 327 1 2228 215 30 57 chr9 18356423 18357226 -123914218 - Zaphod DNA AcHobo -1 825 118 218 250 45 0 chr9 18357232 18357276 -123914168 + L2 LINE L2 3240 3285 -28 2006 150 10 0 chr9 18357495 18357795 -123913649 - AluJo SINE Alu -4 308 6 215 329 14 0 chr9 18358551 18358624 -123912820 + MIR SINE MIR 30 103 -105 737 276 106 37 chr9 18359206 18359612 -123911832 + MLT1K LTR MaLR 147 580 -8 2278 97 0 0 chr9 18360439 18360729 -123910715 + AluSc SINE Alu 1 290 -19 312 311 51 137 chr9 18360902 18361147 -123910297 + L2 LINE L2 2825 3011 -261 1867 168 7 0 chr9 18361147 18361457 -123909987 - AluJo SINE Alu 0 312 1 312 311 51 137 chr9 18361457 18361684 -123909760 + L2 LINE L2 3011 3256 -16 188 348 82 39 chr9 18361779 18362012 -123909432 + L2 LINE L2 2816 3058 -214 2597 58 0 0 chr9 18362311 18362620 -123908824 - AluY SINE Alu -2 309 1 6526 82 10 0 chr9 18362622 18363500 -123907944 - L1PA13 LINE L1 0 6163 5277 3425 22 0 0 chr9 18363729 18364100 -123907344 + SVA Other Other 1015 1385 -1 26 0 0 0 chr9 18364100 18364126 -123907318 + AT_rich Low_complexity Low_complexity 1 26 0 2449 88 0 0 chr9 18364595 18364900 -123906544 + AluSc SINE Alu 1 305 -4 592 328 69 17 chr9 18364909 18365237 -123906207 - L1MC/D LINE L1 -473 5648 5338 1810 139 35 3 chr9 18365237 18365524 -123905920 - AluSx SINE Alu -16 296 1 592 328 69 17 chr9 18365524 18365535 -123905909 - L1MC/D LINE L1 -783 5338 5329 432 0 0 0 chr9 18365535 18365583 -123905861 + (TG)n Simple_repeat Simple_repeat 1 48 0 592 328 69 17 chr9 18365583 18365666 -123905778 - L1MC/D LINE L1 -792 5329 5296 376 293 62 51 chr9 18365674 18365930 -123905514 - L1MC/D LINE L1 -872 5274 5016 217 289 12 60 chr9 18367010 18367093 -123904351 + MIR SINE MIR 65 143 -119 288 348 119 17 chr9 18367237 18367355 -123904089 - MER91A DNA MER1_type -34 162 33 263 159 48 32 chr9 18367714 18367777 -123903667 + MLT1J LTR MaLR 446 509 -2 2387 98 15 70 chr9 18367884 18368109 -123903335 - THE1C LTR MaLR 0 375 139 2239 103 3 16 chr9 18368109 18368419 -123903025 + AluSg SINE Alu 1 306 -4 2387 98 15 70 chr9 18368419 18368532 -123902912 - THE1C LTR MaLR -236 139 60 2806 96 6 0 chr9 18368532 18368885 -123902559 - THE1A LTR MaLR 0 355 1 2387 98 15 70 chr9 18368885 18368942 -123902502 - THE1C LTR MaLR -315 60 1 355 293 53 30 chr9 18369019 18369152 -123902292 + MIR SINE MIR 77 212 -50 1559 200 23 0 chr9 18369160 18369460 -123901984 - AluJo SINE Alu -5 307 1 2163 107 3 7 chr9 18370397 18370695 -123900749 - AluSq SINE Alu -16 297 1 2258 112 0 0 chr9 18371075 18371371 -123900073 + AluSx SINE Alu 1 296 -16 2181 93 45 0 chr9 18371376 18371665 -123899779 + AluSx SINE Alu 1 302 -10 2029 125 81 36 chr9 18374755 18375114 -123896330 - THE1C LTR MaLR 0 375 1 1395 304 85 24 chr9 18375258 18375762 -123895682 + MLT1K LTR MaLR 13 547 -41 768 287 69 3 chr9 18376035 18376338 -123895106 - L1MB8 LINE L1 -244 5877 5555 1227 204 37 20 chr9 18376355 18376649 -123894795 + L1MB8 LINE L1 5879 6177 -1 195 129 0 0 chr9 18376968 18376999 -123894445 + (T)n Simple_repeat Simple_repeat 1 31 0 437 278 60 0 chr9 18378176 18378309 -123893135 + MIR SINE MIR 103 243 -19 2283 103 0 25 chr9 18378800 18379120 -123892324 + AluSx SINE Alu 1 312 0 2038 138 20 0 chr9 18379157 18379462 -123891982 + AluSx SINE Alu 1 311 -1 257 49 73 0 chr9 18379470 18379511 -123891933 + A-rich Low_complexity Low_complexity 2 45 0 254 356 25 6 chr9 18380255 18380415 -123891029 + LTR16C LTR ERVL 329 491 0 386 305 83 85 chr9 18380552 18380975 -123890469 + L2 LINE L2 2250 2671 -643 3991 210 44 43 chr9 18381604 18382778 -123888666 + L1MA9 LINE L1 5118 6274 -38 217 283 38 0 chr9 18382815 18382868 -123888576 + MIR SINE MIR 56 110 -98 1995 253 43 15 chr9 18383317 18383855 -123887589 - HsTC2 DNA Tc2 -65 1833 1281 319 274 126 37 chr9 18383852 18383987 -123887457 - HsTC2 DNA Tc2 -1750 148 2 * 207 203 73 112 chr9 18384022 18384055 -123887389 - MIR SINE MIR -77 131 98 1856 139 0 21 chr9 18384055 18384343 -123887101 + AluJo SINE Alu 1 282 -30 224 0 65 0 chr9 18384346 18384377 -123887067 + (TAAAA)n Simple_repeat Simple_repeat 2 34 0 207 203 73 112 chr9 18384377 18384493 -123886951 - MIR SINE MIR -112 96 1 192 77 0 0 chr9 18385128 18385154 -123886290 + (TA)n Simple_repeat Simple_repeat 1 26 0 2496 80 0 0 chr9 18387566 18387867 -123883577 + AluSc SINE Alu 1 301 -8 313 291 29 62 chr9 18388393 18388603 -123882841 + L1ME LINE L1 4862 5064 -1082 324 316 44 44 chr9 18388680 18388905 -123882539 + L1ME LINE L1 5175 5399 -747 1495 277 74 5 chr9 18388917 18389347 -123882097 + LTR16B LTR ERVL 3 462 -2 291 231 51 51 chr9 18389404 18389521 -123881923 + L1ME LINE L1 5545 5661 -509 2425 68 0 0 chr9 18389527 18389821 -123881623 + AluY SINE Alu 1 294 -17 1175 149 54 18 chr9 18389822 18390043 -123881401 + L1MD2 LINE L1 6121 6349 -10 680 256 93 83 chr9 18390053 18390915 -123880529 + L1ME1 LINE L1 5162 6020 -101 1523 99 5 22 chr9 18393181 18393403 -123878041 - AluSx SINE Alu -94 218 1 591 354 8 16 chr9 18393584 18393827 -123877617 + MIR SINE MIR 1 241 -21 2274 108 0 3 chr9 18394378 18394685 -123876759 + AluSx SINE Alu 1 306 -6 206 287 139 9 chr9 18394833 18394948 -123876496 - MIR SINE MIR -55 207 78 3922 109 10 2 chr9 18394981 18395566 -123875878 + L1P LINE L1 4659 5248 -898 22 0 0 0 chr9 18395740 18395762 -123875682 + AT_rich Low_complexity Low_complexity 1 22 0 2176 98 17 7 chr9 18395871 18396167 -123875277 + AluSg SINE Alu 1 299 -11 21 0 0 0 chr9 18396301 18396322 -123875122 + AT_rich Low_complexity Low_complexity 1 21 0 493 298 67 6 chr9 18396845 18397023 -123874421 - MIR SINE MIR -59 203 15 2099 128 0 0 chr9 18397212 18397509 -123873935 + AluSx SINE Alu 1 297 -15 1773 152 0 17 chr9 18397521 18397823 -123873621 + 7SLRNA srpRNA srpRNA 1 297 -23 34 45 0 15 chr9 18397828 18397862 -123873582 + AT_rich Low_complexity Low_complexity 1 35 -30 1803 188 0 7 chr9 18397862 18398170 -123873274 - AluJo SINE Alu -6 306 1 34 45 0 15 chr9 18398170 18398201 -123873243 + AT_rich Low_complexity Low_complexity 35 65 0 2235 113 0 3 chr9 18398472 18398782 -123872662 - AluSc SINE Alu 0 309 1 6662 89 43 0 chr9 18398791 18399790 -123871654 - L1PA8A LINE L1 -3 6128 5116 370 182 25 25 chr9 18399960 18400081 -123871363 + T-rich Low_complexity Low_complexity 2 122 0 1776 125 50 11 chr9 18400248 18400527 -123870917 + AluSx SINE Alu 12 301 -11 22 0 0 0 chr9 18400529 18400551 -123870893 + AT_rich Low_complexity Low_complexity 1 22 0 341 238 176 11 chr9 18400973 18401284 -123870160 - MLT1J LTR MaLR -2 493 118 6562 30 4 228 chr9 18401586 18402880 -123868564 - SVA Other Other -376 1010 7 237 108 0 0 chr9 18403128 18403165 -123868279 + (T)n Simple_repeat Simple_repeat 1 37 0 2206 121 0 3 chr9 18403189 18403494 -123867950 + AluSx SINE Alu 1 304 -8 36 23 0 0 chr9 18403648 18403691 -123867753 + AT_rich Low_complexity Low_complexity 1 43 0 2068 118 27 3 chr9 18404169 18404465 -123866979 + AluSx SINE Alu 1 303 -9 723 203 0 16 chr9 18404625 18404753 -123866691 + FLAM_C SINE Alu 2 127 -6 320 220 312 9 chr9 18405136 18405245 -123866199 - MIR SINE MIR 0 262 121 769 254 228 27 chr9 18405297 18405631 -123865813 + L2 LINE L2 2485 2885 -429 629 184 34 61 chr9 18405742 18405889 -123865555 + L2 LINE L2 3171 3313 0 204 359 0 16 chr9 18405902 18405966 -123865478 + MIR SINE MIR 25 87 -175 2179 121 3 3 chr9 18405991 18406297 -123865147 + AluSx SINE Alu 1 306 -6 212 306 204 0 chr9 18406520 18406618 -123864826 - L2 LINE L2 -6 3307 3190 33 66 0 0 chr9 18406726 18406787 -123864657 + AT_rich Low_complexity Low_complexity 1 61 0 2122 108 64 28 chr9 18408152 18408512 -123862932 + THE1C LTR MaLR 1 373 -2 2498 81 0 0 chr9 18409854 18410161 -123861283 - AluY SINE Alu -4 307 1 180 0 0 0 chr9 18410165 18410185 -123861259 + (T)n Simple_repeat Simple_repeat 1 20 0 261 128 0 0 chr9 18411565 18411612 -123859832 + (TG)n Simple_repeat Simple_repeat 2 48 0 466 251 142 6 chr9 18412918 18413101 -123858343 - LTR33 LTR ERVL 0 521 314 620 246 97 5 chr9 18413171 18413366 -123858078 - LTR33 LTR ERVL -306 215 3 231 269 90 0 chr9 18413373 18413451 -123857993 + MIR SINE MIR 46 130 -132 1846 209 78 49 chr9 18413676 18413889 -123857555 - L1ME1 LINE L1 -5 6161 5956 2881 86 54 19 chr9 18413889 18414318 -123857126 - MLT2A1 LTR ERVL 0 444 1 1846 209 78 49 chr9 18414318 18414734 -123856710 - L1ME1 LINE L1 -210 5956 5514 3171 126 67 7 chr9 18414742 18415296 -123856148 + L1MB2 LINE L1 5583 6169 -2 206 307 95 29 chr9 18415805 18415983 -123855461 + L2 LINE L2 258 3042 -230 648 147 10 0 chr9 18416144 18416246 -123855198 - FLAM_A SINE Alu -9 133 31 212 273 225 29 chr9 18417148 18417237 -123854207 - MIR SINE MIR -7 255 185 2038 106 39 0 chr9 18417237 18417519 -123853925 - AluSx SINE Alu -19 293 1 212 273 225 29 chr9 18417519 18417638 -123853806 - MIR SINE MIR -77 185 6 181 293 12 61 chr9 18417658 18417740 -123853704 + MER5B DNA MER1_type 96 173 -5 378 254 152 6 chr9 18418072 18418237 -123853207 - HAL1b LINE L1 -254 1094 906 333 295 62 70 chr9 18418393 18418451 -123852993 - HAL1 LINE L1 -1182 1325 1268 2107 109 33 0 chr9 18418451 18418753 -123852691 - AluSx SINE Alu 0 312 1 333 295 62 70 chr9 18418753 18418921 -123852523 - HAL1 LINE L1 -1239 1268 1101 2233 120 3 0 chr9 18420009 18420309 -123851135 + AluSq SINE Alu 1 301 -12 6758 95 22 4 chr9 18420322 18421387 -123850057 + L1MA1 LINE L1 5212 6295 -7 363 283 9 9 chr9 18421433 18421539 -123849905 - MIR SINE MIR -2 260 155 435 180 27 18 chr9 18421544 18421655 -123849789 - LTR26 LTR ERV1 0 603 492 699 209 6 211 chr9 18421664 18422101 -123849343 - LTR8 LTR ERV1 -362 365 1 456 333 20 0 chr9 18422102 18422249 -123849195 - MIR SINE MIR -111 151 2 345 317 139 14 chr9 18422481 18422689 -123848755 - MIR SINE MIR 0 262 29 1476 237 115 40 chr9 18422689 18423179 -123848265 + MLT1E2 LTR MaLR 1 453 -173 195 42 0 0 chr9 18423179 18423203 -123848241 + (ATTG)n Simple_repeat Simple_repeat 2 25 0 1431 190 7 66 chr9 18423203 18423380 -123848064 - AluJo SINE Alu -25 287 134 2162 125 7 0 chr9 18423380 18423669 -123847775 + AluSc SINE Alu 3 293 -16 1431 190 7 66 chr9 18423669 18423796 -123847648 - AluJo SINE Alu -178 134 1 1476 237 115 40 chr9 18423796 18423886 -123847558 + MLT1E2 LTR MaLR 452 626 0 315 339 0 47 chr9 18424067 18424194 -123847250 + L2 LINE L2 2959 3079 -193 342 0 0 0 chr9 18424576 18424614 -123846830 + (CA)n Simple_repeat Simple_repeat 2 39 0 24 53 0 0 chr9 18425585 18425623 -123845821 + AT_rich Low_complexity Low_complexity 1 38 0 207 176 0 0 chr9 18426900 18426934 -123844510 + (TG)n Simple_repeat Simple_repeat 2 35 0 2466 77 0 0 chr9 18427484 18427795 -123843649 + AluY SINE Alu 1 311 0 1253 129 0 16 chr9 18427878 18428064 -123843380 + AluSg/x SINE Alu 106 288 -24 414 238 23 21 chr9 18429147 18429260 -123842184 + MIR SINE MIR 23 113 -95 381 331 64 17 chr9 18430728 18430900 -123840544 - L2 LINE L2 0 3313 3134 1266 282 93 9 chr9 18431520 18431984 -123839460 + HERV16 LTR ERVL 816 1318 -3678 518 283 28 67 chr9 18432274 18432557 -123838887 + HERV16 LTR ERVL 3241 3512 -1484 21 0 0 0 chr9 18433263 18433284 -123838160 + AT_rich Low_complexity Low_complexity 1 21 0 1405 188 66 57 chr9 18434133 18434575 -123836869 - Charlie4a DNA MER1_type -31 477 32 397 247 242 16 chr9 18434599 18434785 -123836659 - MIR SINE MIR -8 254 27 317 219 65 49 chr9 18436579 18436766 -123834678 - Tigger1 DNA MER2_type -797 800 675 399 277 38 19 chr9 18436923 18437082 -123834362 - MARNA DNA Mariner -27 559 398 876 240 59 18 chr9 18437979 18438200 -123833244 + MIR SINE MIR 12 241 -21 1741 191 171 7 chr9 18438336 18438776 -123832668 + MLT2B1 LTR ERVL 1 512 -8 438 297 20 27 chr9 18439370 18439549 -123831895 + MIR SINE MIR 31 206 -56 1339 177 23 16 chr9 18441148 18441446 -123829998 - MER61B LTR ERV1 -29 396 3 22 0 0 0 chr9 18442165 18442187 -123829257 + AT_rich Low_complexity Low_complexity 1 22 0 510 299 25 6 chr9 18443993 18444150 -123827294 + L2 LINE L2 2593 2752 -562 296 296 20 0 chr9 18444235 18444333 -123827111 - MER103 DNA DNA -7 159 60 1085 238 5 0 chr9 18444787 18445010 -123826434 - MER58A DNA MER1_type 0 224 1 23 0 0 0 chr9 18445180 18445203 -123826241 + AT_rich Low_complexity Low_complexity 1 23 0 1869 157 14 10 chr9 18445203 18445497 -123825947 - AluJb SINE Alu -17 295 1 777 283 94 17 chr9 18446274 18446624 -123824820 + MLT1J1 LTR MaLR 70 446 0 28 0 0 0 chr9 18447152 18447180 -123824264 + AT_rich Low_complexity Low_complexity 1 28 0 1696 86 0 5 chr9 18447605 18447825 -123823619 - AluSq SINE Alu -6 307 89 2217 228 96 27 chr9 18448334 18448417 -123823027 + L1ME3A LINE L1 5244 5320 -850 2393 95 0 13 chr9 18448417 18448732 -123822712 + AluY SINE Alu 1 311 0 2217 228 96 27 chr9 18448732 18448753 -123822691 + L1ME3A LINE L1 5320 5338 -832 1503 104 3 190 chr9 18448753 18449117 -123822327 + AluJb SINE Alu 1 296 -6 2217 228 96 27 chr9 18449117 18449852 -123821592 + L1ME3A LINE L1 5338 6142 -28 748 326 13 0 chr9 18449869 18450108 -123821336 + MIR SINE MIR 20 261 -1 23 78 0 0 chr9 18450528 18450579 -123820865 + AT_rich Low_complexity Low_complexity 1 51 0 415 301 9 0 chr9 18451014 18451127 -123820317 + L2 LINE L2 3200 3313 0 22 56 0 0 chr9 18451179 18451215 -123820229 + AT_rich Low_complexity Low_complexity 1 36 0 505 278 64 0 chr9 18451964 18452151 -123819293 - L1MB2 LINE L1 -3 6168 5970 2560 71 0 3 chr9 18452214 18452524 -123818920 - AluSq SINE Alu -4 309 1 260 309 50 53 chr9 18452735 18453155 -123818289 - L1MC4a LINE L1 -237 5884 5520 1114 182 0 0 chr9 18453185 18453366 -123818078 + AluJb SINE Alu 129 309 -3 380 264 130 34 chr9 18453630 18453869 -123817575 - L1ME3A LINE L1 -219 5951 5690 3852 222 59 112 chr9 18453908 18455895 -123815549 - Charlie1 DNA MER1_type 0 2761 908 2220 66 0 17 chr9 18455895 18456208 -123815236 + AluY SINE Alu 1 308 0 3852 222 59 112 chr9 18456208 18456511 -123814933 - Charlie1 DNA MER1_type -1853 908 591 4064 172 36 8 chr9 18456518 18457339 -123814105 - L1MB3 LINE L1 -12 6171 5328 1518 238 31 46 chr9 18457455 18457994 -123813450 - Charlie1 DNA MER1_type -2228 533 3 2263 87 0 13 chr9 18457995 18458293 -123813151 - AluY SINE Alu -17 294 1 339 349 0 8 chr9 18458299 18458431 -123813013 - L1ME3A LINE L1 -501 5661 5531 1334 272 74 5 chr9 18458474 18458904 -123812540 - LTR16B LTR ERVL -2 462 3 337 316 44 44 chr9 18458916 18459141 -123812303 - L1ME3A LINE L1 -747 5399 5175 242 291 29 62 chr9 18459218 18459428 -123812016 - L1ME3A LINE L1 -1082 5064 4862 2495 80 0 0 chr9 18459954 18460255 -123811189 - AluSc SINE Alu -8 301 1 192 77 0 0 chr9 18462667 18462693 -123808751 + (TA)n Simple_repeat Simple_repeat 1 26 0 207 203 73 112 chr9 18463328 18463444 -123808000 + MIR SINE MIR 1 120 -110 224 0 65 0 chr9 18463444 18463475 -123807969 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 1856 139 0 21 chr9 18463478 18463766 -123807678 - AluJo SINE Alu -30 282 1 207 203 73 112 chr9 18463766 18463799 -123807645 + MIR SINE MIR 122 153 -77 319 274 126 37 chr9 18463834 18463969 -123807475 + HsTC2 DNA Tc2 2 148 -1750 * 1995 253 43 15 chr9 18463966 18464504 -123806940 + HsTC2 DNA Tc2 1281 1833 -65 217 283 38 0 chr9 18464953 18465006 -123806438 - MIR SINE MIR -98 110 56 4027 210 44 41 chr9 18465043 18466215 -123805229 - L1MA9 LINE L1 -38 6274 5118 410 307 80 85 chr9 18466844 18467268 -123804176 - L2 LINE L2 -643 2671 2250 254 356 25 6 chr9 18467405 18467565 -123803879 - LTR16C LTR ERVL 0 491 329 257 49 73 0 chr9 18468308 18468349 -123803095 + T-rich Low_complexity Low_complexity 2 45 0 2038 138 20 0 chr9 18468357 18468662 -123802782 - AluSx SINE Alu -1 311 1 2283 103 0 25 chr9 18468699 18469019 -123802425 - AluSx SINE Alu 0 312 1 437 278 60 0 chr9 18469510 18469643 -123801801 - MIR SINE MIR -19 243 103 188 65 0 32 chr9 18470820 18470851 -123800593 + (GAAAA)n Simple_repeat Simple_repeat 2 31 0 1227 204 37 20 chr9 18471169 18471463 -123799981 - L1MB8 LINE L1 -1 6177 5879 768 287 69 3 chr9 18471480 18471783 -123799661 + L1MB8 LINE L1 5555 5877 -244 1395 304 85 24 chr9 18472056 18472560 -123798884 - MLT1K LTR MaLR -41 547 13 2029 125 81 36 chr9 18472704 18473063 -123798381 + THE1C LTR MaLR 1 375 0 2172 94 45 0 chr9 18476153 18476441 -123795003 - AluSx SINE Alu -11 301 1 2258 112 0 0 chr9 18476446 18476742 -123794702 - AluSx SINE Alu -16 296 1 22 0 0 0 chr9 18476994 18477016 -123794428 + AT_rich Low_complexity Low_complexity 1 22 0 2176 98 17 7 chr9 18477125 18477421 -123794023 + AluSg SINE Alu 1 299 -11 21 0 0 0 chr9 18477555 18477576 -123793868 + AT_rich Low_complexity Low_complexity 1 21 0 493 298 67 6 chr9 18478099 18478277 -123793167 - MIR SINE MIR -59 203 15 2099 128 0 0 chr9 18478466 18478763 -123792681 + AluSx SINE Alu 1 297 -15 1773 152 0 17 chr9 18478775 18479077 -123792367 + 7SLRNA srpRNA srpRNA 1 297 -23 34 45 0 15 chr9 18479082 18479116 -123792328 + AT_rich Low_complexity Low_complexity 1 35 -30 1803 188 0 7 chr9 18479116 18479424 -123792020 - AluJo SINE Alu -6 306 1 34 45 0 15 chr9 18479424 18479455 -123791989 + AT_rich Low_complexity Low_complexity 35 65 0 2235 113 0 3 chr9 18479726 18480036 -123791408 - AluSc SINE Alu 0 309 1 6662 89 14 1 chr9 18480045 18481504 -123789940 - L1PA8A LINE L1 -3 6128 4659 206 287 139 9 chr9 18481537 18481652 -123789792 + MIR SINE MIR 78 207 -55 2296 104 0 3 chr9 18481800 18482107 -123789337 - AluSx SINE Alu -6 306 1 591 354 8 16 chr9 18482658 18482901 -123788543 - MIR SINE MIR -21 241 1 2313 92 3 13 chr9 18483082 18483396 -123788048 + AluSx SINE Alu 1 311 -1 189 0 0 0 chr9 18483658 18483679 -123787765 + (TA)n Simple_repeat Simple_repeat 1 21 0 2560 45 3 6 chr9 18483681 18483993 -123787451 - AluY SINE Alu 0 311 1 754 142 0 0 chr9 18485032 18485138 -123786306 + AluSg/x SINE Alu 188 293 -19 1693 259 146 21 chr9 18486137 18486802 -123784642 - L1ME3A LINE L1 -6 6164 5417 23 33 0 0 chr9 18490345 18490375 -123781069 + AT_rich Low_complexity Low_complexity 1 30 0 2064 123 7 3 chr9 18491109 18491418 -123780026 - AluSx SINE Alu -2 310 1 266 389 43 0 chr9 18491657 18491796 -123779648 - L2 LINE L2 -2 3270 3126 2366 92 10 0 chr9 18491870 18492174 -123779270 + AluSp SINE Alu 1 307 -6 672 133 0 105 chr9 18492744 18492887 -123778557 + MER112 DNA MER1_type 126 253 -7 1734 188 13 10 chr9 18493111 18493409 -123778035 - AluJb SINE Alu -12 300 2 2261 81 10 3 chr9 18494181 18494476 -123776968 + AluSq SINE Alu 1 297 -16 22 56 0 0 chr9 18494654 18494690 -123776754 + AT_rich Low_complexity Low_complexity 1 36 0 1082 249 102 43 chr9 18495326 18495863 -123775581 - L1ME4a LINE L1 -1 6120 5552 330 329 144 0 chr9 18496421 18496567 -123774877 + MIR SINE MIR 31 197 -65 2809 63 0 0 chr9 18496662 18496994 -123774450 + L1PA7 LINE L1 5818 6149 -5 6637 129 29 94 chr9 18497278 18498647 -123772797 + pTR5 LTR ERV1 742 2021 -417 289 248 30 20 chr9 18498648 18498749 -123772695 + LTR30 LTR ERV1 541 642 -80 1194 101 34 6 chr9 18498750 18498928 -123772516 + LTR12 LTR ERV1 480 662 -52 304 205 193 4 chr9 18498928 18499034 -123772410 + MIR SINE MIR 33 156 -59 601 275 21 21 chr9 18499035 18499097 -123772347 - MIR SINE MIR -1 261 200 2109 136 0 7 chr9 18499097 18499399 -123772045 - AluSx SINE Alu -12 300 1 601 275 21 21 chr9 18499399 18499525 -123771919 - MIR SINE MIR -61 201 73 1966 148 10 0 chr9 18499808 18500112 -123771332 + AluSq SINE Alu 1 307 -6 288 111 0 22 chr9 18500161 18500206 -123771238 - MLT2B1 LTR ERVL 0 464 421 252 0 0 0 chr9 18500212 18500240 -123771204 + (TTCCC)n Simple_repeat Simple_repeat 1 28 0 700 155 35 17 chr9 18500243 18500417 -123771027 + CT-rich Low_complexity Low_complexity 2 178 0 2074 167 57 50 chr9 18500439 18500876 -123770568 - MLT2B1 LTR ERVL -80 440 1 297 240 0 13 chr9 18500876 18500951 -123770493 - MER117 DNA MER1_type -116 81 8 530 274 52 7 chr9 18501469 18501604 -123769840 + MIR3 SINE MIR 20 160 -48 1785 65 0 0 chr9 18501846 18502060 -123769384 + AluY SINE Alu 87 300 -11 1693 259 146 21 chr9 18502988 18503653 -123767791 + L1ME3A LINE L1 5417 6164 -6 754 142 0 0 chr9 18504652 18504758 -123766686 - AluSg/x SINE Alu -19 291 186 2481 36 3 10 chr9 18505797 18506099 -123765345 + AluY SINE Alu 1 300 -11 24 0 0 0 chr9 18506194 18506218 -123765226 + AT_rich Low_complexity Low_complexity 1 24 0 1911 118 7 0 chr9 18506218 18506488 -123764956 - AluSq SINE Alu -5 308 37 586 290 71 29 chr9 18507275 18507681 -123763763 + MLT2E LTR ERVL 1 663 0 201 39 0 0 chr9 18508297 18508323 -123763121 + (TTA)n Simple_repeat Simple_repeat 2 27 0 234 187 143 33 chr9 18508406 18508497 -123762947 + MER113 DNA MER1_type? 1 101 -420 397 191 23 69 chr9 18508504 18508667 -123762777 - HsTC2 DNA Tc2 0 1898 1749 2214 97 45 0 chr9 18508670 18508958 -123762486 + AluSx SINE Alu 1 301 -11 234 300 0 0 chr9 18509279 18509349 -123762095 - HsTC2 DNA Tc2 -1796 102 33 778 234 228 19 chr9 18509386 18509706 -123761738 + MER113 DNA MER1_type? 132 518 -3 2146 122 0 0 chr9 18509727 18510021 -123761423 - AluSq SINE Alu -19 294 1 1671 201 99 33 chr9 18510242 18510801 -123760643 - MLT1E2 LTR MaLR -6 620 1 21 57 0 0 chr9 18511933 18511968 -123759476 + AT_rich Low_complexity Low_complexity 1 35 0 2317 106 13 0 chr9 18512446 18512747 -123758697 + AluSq SINE Alu 1 305 -8 889 246 20 0 chr9 18512999 18513194 -123758250 + MIR SINE MIR 8 206 -56 251 336 87 19 chr9 18513238 18513342 -123758102 + L2 LINE L2 271 381 -2933 208 378 53 20 chr9 18513463 18513614 -123757830 + L2 LINE L2 577 732 -2582 2933 176 40 4 chr9 18513621 18514144 -123757300 + MER44D DNA MER2_type 6 602 -3 2242 92 7 0 chr9 18514359 18514652 -123756792 - AluSq SINE Alu -18 295 1 2278 81 0 3 chr9 18515319 18515604 -123755840 + AluSg SINE Alu 3 286 -24 352 243 44 66 chr9 18515714 18515759 -123755685 - L1ME4a LINE L1 -211 5910 5866 1642 168 61 18 chr9 18515759 18515832 -123755612 - MER2 DNA MER2_type -1 343 275 1917 164 0 0 chr9 18515832 18516124 -123755320 + AluJb SINE Alu 1 292 -20 1642 168 61 18 chr9 18516124 18516378 -123755066 - MER2 DNA MER2_type -69 275 2 352 243 44 66 chr9 18516378 18516513 -123754931 - L1ME4a LINE L1 -255 5866 5734 2047 81 0 0 chr9 18516672 18516931 -123754513 + AluY SINE Alu 41 299 -12 360 315 59 9 chr9 18517027 18517246 -123754198 - L1ME4a LINE L1 -462 5659 5430 820 182 38 19 chr9 18517318 18517477 -123753967 + FRAM SINE Alu 2 163 -3 495 263 0 0 chr9 18517593 18517707 -123753737 + MLT1J1 LTR MaLR 6 119 -327 1013 273 122 35 chr9 18517725 18518158 -123753286 - MLT1E2 LTR MaLR -81 497 52 588 150 60 15 chr9 18518752 18518885 -123752559 - L1MB4 LINE L1 -4 6176 6038 1573 204 18 0 chr9 18519022 18519306 -123752138 + AluJo SINE Alu 1 289 -23 234 0 0 0 chr9 18519316 18519342 -123752102 + (TAA)n Simple_repeat Simple_repeat 3 28 0 2335 87 0 3 chr9 18520176 18520474 -123750970 + AluSq SINE Alu 1 297 -16 22 35 0 0 chr9 18520653 18520682 -123750762 + AT_rich Low_complexity Low_complexity 1 29 0 1013 307 36 16 chr9 18523707 18524153 -123747291 - L1ME3A LINE L1 -230 5940 5486 266 153 17 0 chr9 18524174 18524233 -123747211 + (TA)n Simple_repeat Simple_repeat 1 60 0 285 241 162 1 chr9 18524260 18524504 -123746940 - L1ME3A LINE L1 -739 5427 5162 1374 167 35 60 chr9 18524514 18524736 -123746708 - L1MD2 LINE L1 -10 6349 6136 2421 68 0 0 chr9 18524736 18525030 -123746414 - AluY SINE Alu -17 294 1 1374 167 35 60 chr9 18525030 18525124 -123746320 - L1MD2 LINE L1 -223 6136 6041 658 217 84 0 chr9 18525359 18525502 -123745942 - L1MD2 LINE L1 -318 6041 5887 471 134 24 0 chr9 18525573 18525655 -123745789 - Charlie4 DNA MER1_type 0 1961 1878 809 219 73 34 chr9 18525667 18525900 -123745544 - L1MD2 LINE L1 -495 5669 5428 2861 146 18 81 chr9 18525903 18526555 -123744889 - L1MC1 LINE L1 -5 6328 5718 2275 174 33 2 chr9 18526636 18527032 -123744412 - MSTB LTR MaLR -18 408 1 2465 205 38 34 chr9 18527032 18527390 -123744054 - L1MC1 LINE L1 -621 5723 5368 2221 108 3 13 chr9 18527390 18527705 -123743739 - AluSx SINE Alu 0 312 1 2465 205 38 34 chr9 18527705 18528436 -123743008 - L1MC1 LINE L1 -976 5368 4566 416 250 62 0 chr9 18528412 18528556 -123742888 - L1MD2 LINE L1 -729 5437 5285 * 1639 178 24 13 chr9 18528594 18529059 -123742385 - MLT2B1 LTR ERVL 0 520 2 1787 225 57 32 chr9 18529074 18529461 -123741983 - L1MD2 LINE L1 -898 5248 4837 1713 166 47 7 chr9 18529461 18529739 -123741705 + AluJo SINE Alu 12 300 -12 1787 225 57 32 chr9 18529739 18529981 -123741463 - L1MD2 LINE L1 -1309 4837 4603 735 218 224 92 chr9 18529983 18530062 -123741382 + MSTD LTR MaLR 1 68 -328 2358 70 3 7 chr9 18530062 18530360 -123741084 + AluSc SINE Alu 1 297 -12 735 218 224 92 chr9 18530360 18530566 -123740878 + MSTD LTR MaLR 68 343 -53 1734 156 3 59 chr9 18530566 18530887 -123740557 - AluJo SINE Alu -9 303 1 735 218 224 92 chr9 18530887 18530949 -123740495 + MSTD LTR MaLR 343 395 -1 421 309 46 7 chr9 18530954 18531236 -123740208 - L1MD2 LINE L1 -1545 4601 4309 2153 117 7 0 chr9 18531257 18531556 -123739888 + AluSp SINE Alu 1 301 -12 696 187 30 50 chr9 18531561 18531759 -123739685 - L1MA9 LINE L1 -5 7267 7074 23 68 0 0 chr9 18531759 18531803 -123739641 + AT_rich Low_complexity Low_complexity 1 44 0 7493 167 23 37 chr9 18531851 18532168 -123739276 - L1MA9 LINE L1 -182 7090 6770 7896 193 18 10 chr9 18532168 18534678 -123736766 - L1PA15 LINE L1 -1 6164 3638 7493 167 23 37 chr9 18534678 18535549 -123735895 - L1MA9 LINE L1 -502 6770 5888 2371 88 0 0 chr9 18535549 18535846 -123735598 - AluSc SINE Alu -12 297 1 7493 167 23 37 chr9 18535846 18537040 -123734404 - L1MA9 LINE L1 -1384 5888 4741 275 133 0 0 chr9 18537043 18537088 -123734356 - U5 snRNA snRNA -67 49 5 289 247 0 0 chr9 18537089 18537166 -123734278 - L1MD2 LINE L1 -2351 3795 3719 5569 248 71 18 chr9 18537574 18540810 -123730634 - L1MA9 LINE L1 -2410 4696 1589 755 234 0 13 chr9 18540857 18541015 -123730429 + Tigger1 DNA MER2_type 2 157 -2261 * 1304 148 0 9 chr9 18541004 18541221 -123730223 + Tigger1 DNA MER2_type 2202 2416 -2 973 174 14 50 chr9 18541221 18541439 -123730005 - L1MA9 LINE L1 -6786 244 35 2874 245 34 5 chr9 18541554 18542432 -123729012 - L1MD2 LINE L1 -3007 3139 2236 2345 99 3 0 chr9 18543371 18543683 -123727761 + AluSp SINE Alu 1 313 0 2196 102 17 0 chr9 18544305 18544599 -123726845 + AluSc SINE Alu 1 299 -10 490 300 54 77 chr9 18546127 18546440 -123725004 - L2 LINE L2 -50 3222 2917 260 83 125 0 chr9 18547769 18547817 -123723627 - MLT2A1 LTR ERVL 0 453 400 378 169 28 11 chr9 18547818 18547995 -123723449 + (TA)n Simple_repeat Simple_repeat 1 180 0 580 65 71 12 chr9 18548025 18548194 -123723250 + (TA)n Simple_repeat Simple_repeat 2 180 0 375 168 43 0 chr9 18548224 18548480 -123722964 + (TA)n Simple_repeat Simple_repeat 1 267 0 2936 86 5 10 chr9 18548481 18548887 -123722557 - MLT2A1 LTR ERVL -40 404 1 2571 195 11 6 chr9 18548939 18549468 -123721976 + L1MB4 LINE L1 5649 6180 0 466 313 79 45 chr9 18549995 18550439 -123721005 + MLT1J LTR MaLR 1 459 -52 2021 129 52 19 chr9 18550714 18551077 -123720367 - THE1C LTR MaLR 0 375 1 317 95 167 0 chr9 18551660 18551744 -123719700 - THE1C LTR MaLR -268 107 10 2261 57 60 20 chr9 18552136 18552435 -123719009 - AluY SINE Alu 0 311 1 552 225 58 0 chr9 18552504 18552624 -123718820 + L2 LINE L2 3187 3313 0 26 0 0 0 chr9 18553134 18553160 -123718284 + AT_rich Low_complexity Low_complexity 1 26 0 182 268 0 0 chr9 18553234 18553275 -123718169 - MIR SINE MIR 0 262 222 330 352 132 4 chr9 18554011 18554261 -123717183 - L2 LINE L2 -129 3184 2903 1777 160 11 18 chr9 18554457 18554759 -123716685 + AluJb SINE Alu 3 302 0 1331 327 110 31 chr9 18554873 18555021 -123716423 + L2 LINE L2 2211 2346 -967 2172 132 0 0 chr9 18555021 18555325 -123716119 - AluSx SINE Alu -8 304 1 1331 327 110 31 chr9 18555325 18556183 -123715261 + L2 LINE L2 2346 3303 -10 509 225 11 121 chr9 18556267 18556314 -123715130 + MER5B DNA MER1_type 1 52 -126 2394 80 0 3 chr9 18556314 18556614 -123714830 - AluY SINE Alu -12 299 1 509 225 11 121 chr9 18556614 18556748 -123714696 + MER5B DNA MER1_type 52 162 -16 674 310 155 3 chr9 18557062 18557359 -123714085 + L2 LINE L2 2971 3312 -1 2504 56 0 0 chr9 18557514 18557820 -123713624 - AluY SINE Alu -5 306 1 189 307 99 50 chr9 18558054 18558155 -123713289 - L2 LINE L2 -15 3298 3193 327 286 11 0 chr9 18558639 18558730 -123712714 + LTR33 LTR ERVL 1 92 -429 346 280 82 33 chr9 18558824 18558945 -123712499 + LTR33 LTR ERVL 264 378 -143 2142 75 41 10 chr9 18558945 18559239 -123712205 + AluY SINE Alu 1 303 -8 346 280 82 33 chr9 18559239 18559360 -123712084 + LTR33 LTR ERVL 378 518 -3 25 0 0 0 chr9 18560940 18560965 -123710479 + AT_rich Low_complexity Low_complexity 1 25 0 4177 169 20 35 chr9 18561361 18561583 -123709861 + L1MB5 LINE L1 5271 5495 -679 1895 65 4 15 chr9 18561583 18561824 -123709620 + L1PA5 LINE L1 5892 6148 -6 4177 169 20 35 chr9 18561824 18562464 -123708980 + L1MB5 LINE L1 5495 6120 -54 1953 148 7 0 chr9 18562480 18562783 -123708661 - AluSx SINE Alu -7 305 1 481 313 55 15 chr9 18563183 18563384 -123708060 + MIR SINE MIR 49 257 -5 2145 32 0 4 chr9 18565946 18566192 -123705252 - AluY SINE Alu -44 267 23 320 194 161 43 chr9 18567076 18567262 -123704182 + MER112 DNA MER1_type 47 254 -6 34 0 0 0 chr9 18568591 18568625 -123702819 + AT_rich Low_complexity Low_complexity 1 34 0 2217 113 0 0 chr9 18568667 18568969 -123702475 - AluSg SINE Alu -8 302 1 1836 148 4 0 chr9 18568985 18569255 -123702189 + AluSx SINE Alu 24 294 -18 1512 179 61 20 chr9 18569281 18569578 -123701866 - AluJo SINE Alu -3 309 1 1170 125 26 52 chr9 18569901 18570027 -123701417 + L1MA8 LINE L1 6062 6181 -110 1479 197 30 14 chr9 18570027 18570322 -123701122 - AluJb SINE Alu -12 300 1 1170 125 26 52 chr9 18570322 18570427 -123701017 + L1MA8 LINE L1 6181 6287 -4 252 301 72 0 chr9 18570433 18570626 -123700818 + L1M4 LINE L1 5023 5229 -917 242 200 176 12 chr9 18570653 18570738 -123700706 - MLT1J LTR MaLR -299 212 114 350 297 142 29 chr9 18570825 18571208 -123700236 - L2 LINE L2 -140 3173 2733 486 294 25 70 chr9 18571215 18571385 -123700059 - L2 LINE L2 -682 2632 2471 2545 84 0 0 chr9 18571385 18571693 -123699751 + AluSg SINE Alu 1 308 -2 486 294 25 70 chr9 18571693 18571723 -123699721 - L2 LINE L2 -843 2471 2441 1394 96 37 23 chr9 18571732 18571950 -123699494 - MER30 DNA MER1_type -9 221 1 747 270 46 23 chr9 18571961 18572220 -123699224 - L2 LINE L2 -874 2440 2176 467 210 117 25 chr9 18572220 18572382 -123699062 + MER5B DNA MER1_type 1 177 -1 572 254 86 29 chr9 18572392 18572601 -123698843 - L2 LINE L2 -1369 1945 1725 291 232 105 28 chr9 18574156 18574337 -123697107 + Charlie7 DNA MER1_type 2418 2612 0 2650 10 0 0 chr9 18574397 18574724 -123696720 - AluYb8 SINE Alu 0 327 1 285 283 101 51 chr9 18574724 18574862 -123696582 - MER5A DNA MER1_type -37 152 8 604 304 98 24 chr9 18575366 18575918 -123695526 - HAL1b LINE L1 -701 1692 344 2063 150 49 3 chr9 18575974 18576321 -123695123 + MLT1A1 LTR MaLR 1 363 -2 27 87 0 0 chr9 18576330 18576399 -123695045 + AT_rich Low_complexity Low_complexity 1 69 0 348 322 49 7 chr9 18577303 18577446 -123693998 - L1ME4a LINE L1 -295 5826 5678 269 232 61 12 chr9 18577474 18577556 -123693888 + MER20 DNA MER1_type 93 178 -41 590 232 23 64 chr9 18577623 18577843 -123693601 - L1MC5 LINE L1 -31 7930 7720 2483 217 46 7 chr9 18577849 18578392 -123693052 + MER82 DNA MER2_type 7 570 -83 30400 110 13 47 chr9 18578404 18579089 -123692355 - L1PA7 LINE L1 0 6154 5447 2516 77 0 0 chr9 18579089 18579400 -123692044 - AluY SINE Alu 0 311 1 30400 110 13 47 chr9 18579400 18584177 -123687267 - L1PA7 LINE L1 -707 5447 944 5688 61 1 0 chr9 18584177 18584864 -123686580 + LTR12 LTR ERV1 1 688 0 30400 110 13 47 chr9 18584864 18585767 -123685677 - L1PA7 LINE L1 -5210 944 12 338 214 0 12 chr9 18585776 18585860 -123685584 + MER82 DNA MER2_type 561 643 -10 315 234 80 57 chr9 18585861 18586160 -123685284 - L1MC5 LINE L1 -240 7721 7416 629 120 0 128 chr9 18586266 18586399 -123685045 - Tigger1 DNA MER2_type -1 2417 2302 1091 204 4 0 chr9 18587063 18587289 -123684155 + MLT2B1 LTR ERVL 1 227 -293 2161 139 34 5 chr9 18587326 18587714 -123683730 + Tigger4(Zombi) DNA MER2_type 2333 2731 0 1239 212 70 0 chr9 18587718 18588062 -123683382 - L1M4 LINE L1 -2229 3917 3550 2208 116 0 7 chr9 18588163 18588466 -123682978 - AluSx SINE Alu -11 301 1 3162 166 35 20 chr9 18588466 18589117 -123682327 + L1MD1 LINE L1 5582 6242 0 22 80 0 0 chr9 18589645 18589695 -123681749 + AT_rich Low_complexity Low_complexity 1 50 0 860 287 28 54 chr9 18591261 18591763 -123679681 + L1 LINE L1 1612 2100 -5068 2127 157 0 0 chr9 18591763 18592108 -123679336 - MER7A DNA MER2_type 0 346 4 920 202 65 28 chr9 18592111 18592433 -123679011 + L1 LINE L1 2118 2451 -4647 * 4585 170 25 9 chr9 18592413 18593414 -123678030 + L1 LINE L1 5096 6112 -1055 1569 193 7 14 chr9 18593582 18593878 -123677566 + AluJo SINE Alu 1 294 -18 398 221 0 21 chr9 18595079 18595174 -123676270 - HAL1 LINE L1 -383 2124 2032 2962 276 121 34 chr9 18595741 18597620 -123673824 - HAL1 LINE L1 -464 2043 1 2306 102 0 13 chr9 18597742 18598056 -123673388 + AluSg SINE Alu 1 310 0 1964 118 62 0 chr9 18598133 18598422 -123673022 + AluSx SINE Alu 1 307 -5 2106 133 0 0 chr9 18598745 18599046 -123672398 - AluSx SINE Alu -11 301 1 1756 180 32 0 chr9 18599047 18599330 -123672114 - AluSx SINE Alu -20 292 1 228 298 221 23 chr9 18599427 18599558 -123671886 - L2 LINE L2 -1 3271 3115 2334 141 0 19 chr9 18599776 18600146 -123671298 + THE1B LTR MaLR 1 363 -1 2398 97 0 0 chr9 18600662 18600972 -123670472 + AluY SINE Alu 1 310 -1 255 184 150 54 chr9 18602773 18602920 -123668524 + L1MC/D LINE L1 5320 5480 -2328 1633 301 73 12 chr9 18603020 18603584 -123667860 + L1M4b LINE L1 196 793 -6066 2843 238 111 5 chr9 18603587 18604674 -123666770 + L1 LINE L1 2715 3917 -2229 2161 139 34 5 chr9 18604678 18605066 -123666378 - Tigger4(Zombi) DNA MER2_type 0 2731 2333 1091 204 4 0 chr9 18605103 18605329 -123666115 - MLT2B1 LTR ERVL -293 227 1 629 120 0 128 chr9 18605993 18606126 -123665318 + Tigger1 DNA MER2_type 2302 2417 -1 315 234 80 57 chr9 18606232 18606531 -123664913 + L1MC5 LINE L1 7416 7721 -240 338 214 0 12 chr9 18606532 18606616 -123664828 - MER82 DNA MER2_type -10 643 561 30104 112 23 45 chr9 18606625 18607528 -123663916 + L1PA7 LINE L1 12 933 -5221 5688 61 1 0 chr9 18607528 18608215 -123663229 - LTR12 LTR ERV1 0 688 1 30104 112 23 45 chr9 18608215 18612984 -123658460 + L1PA7 LINE L1 933 5530 -624 2330 114 0 0 chr9 18612984 18613291 -123658153 + AluY SINE Alu 1 307 -4 30104 112 23 45 chr9 18613291 18613884 -123657560 + L1PA7 LINE L1 5530 6134 -20 5200 170 5 21 chr9 18613888 18615000 -123656444 + L1 LINE L1 4303 5396 -750 573 77 11 11 chr9 18615000 18615084 -123656360 + L1PA4 LINE L1 6058 6148 -7 699 277 90 27 chr9 18615444 18615845 -123655599 + L1M4 LINE L1 3623 4048 -2098 448 180 34 11 chr9 18616164 18616253 -123655191 + Tigger1 DNA MER2_type 2302 2392 -26 1730 234 48 24 chr9 18616253 18616877 -123654567 + L1 LINE L1 2594 3232 -2914 43307 42 2 1 chr9 18616882 18623019 -123648425 + L1PA4 LINE L1 7 6152 -3 6164 199 24 40 chr9 18623071 18623309 -123648135 + L1PA16 LINE L1 3867 4107 -2039 6372 82 40 16 chr9 18623309 18624327 -123647117 - L1PA8 LINE L1 0 6172 5145 6164 199 24 40 chr9 18624327 18625610 -123645834 + L1PA16 LINE L1 4107 5363 -783 22399 28 0 0 chr9 18625610 18629088 -123642356 + L1PA3 LINE L1 2674 6155 0 1088 163 70 23 chr9 18629088 18629494 -123641950 + LTR54 LTR ERV1 1 485 -25 3123 135 29 22 chr9 18629500 18630048 -123641396 + L1PA16 LINE L1 5352 5903 -263 * 4972 258 114 30 chr9 18630031 18631982 -123639462 + L1 LINE L1 3288 5403 -743 6641 187 26 32 chr9 18631996 18634534 -123636910 + L1MA4A LINE L1 3795 6303 0 3534 228 102 11 chr9 18634512 18635708 -123635736 + L1M4c LINE L1 1005 2309 -4075 * 1631 218 3 12 chr9 18637583 18637922 -123633522 + L1MCa LINE L1 158 493 -6071 1614 206 11 65 chr9 18637969 18638402 -123633042 + L1MCa LINE L1 498 907 -5657 927 211 79 94 chr9 18638463 18638805 -123632639 + MER57A LTR ERV1 63 399 -4 375 211 193 0 chr9 18638865 18638979 -123632465 + L1MCa LINE L1 786 921 -5124 1960 164 29 11 chr9 18638981 18639329 -123632115 + MLT2D LTR ERVL 6 359 -55 311 374 45 30 chr9 18639695 18639960 -123631484 + L2 LINE L2 2196 2464 -850 898 179 106 0 chr9 18641455 18641634 -123629810 + MSTA LTR MaLR 1 198 -230 513 86 0 0 chr9 18641634 18641704 -123629740 - L1P1 LINE L1 -509 5646 5577 609 40 0 0 chr9 18641704 18641779 -123629665 + L1PA6 LINE L1 6073 6147 -7 730 195 133 53 chr9 18641806 18642032 -123629412 + MSTA LTR MaLR 185 428 0 25 31 0 0 chr9 18642392 18642424 -123629020 + AT_rich Low_complexity Low_complexity 1 32 0 399 309 95 21 chr9 18644013 18644350 -123627094 + L1MCa LINE L1 1331 1692 -4862 1688 282 108 36 chr9 18644380 18645398 -123626046 - L2 LINE L2 -2 3311 2226 1161 224 9 9 chr9 18645406 18645638 -123625806 + Tigger7 DNA MER2_type 3 234 -499 611 184 10 0 chr9 18645640 18645743 -123625701 + Tigger7 DNA MER2_type 2383 2486 -1 2906 294 74 25 chr9 18645748 18646017 -123625427 - L2 LINE L2 -1104 2210 1956 2116 102 8 54 chr9 18646017 18646389 -123625055 - THE1A LTR MaLR 0 355 1 2906 294 74 25 chr9 18646389 18647171 -123624273 - L2 LINE L2 -1358 1956 1107 23 0 0 0 chr9 18647313 18647336 -123624108 + AT_rich Low_complexity Low_complexity 1 23 0 3181 96 2 72 chr9 18647769 18648299 -123623145 + L1PA13 LINE L1 5651 6143 -20 664 210 48 36 chr9 18648541 18648662 -123622782 + MER5A DNA MER1_type 19 144 -45 1209 218 121 18 chr9 18648662 18649001 -123622443 + MLT1A2 LTR MaLR 1 374 0 664 210 48 36 chr9 18649001 18649046 -123622398 + MER5A DNA MER1_type 144 187 -2 23 0 0 0 chr9 18649351 18649374 -123622070 + AT_rich Low_complexity Low_complexity 1 23 0 193 314 100 0 chr9 18653045 18653115 -123618329 + L2 LINE L2 2905 2981 -291 333 47 0 0 chr9 18653137 18653180 -123618264 + (TG)n Simple_repeat Simple_repeat 2 44 0 1687 173 4 0 chr9 18653180 18653452 -123617992 - AluJb SINE Alu -34 278 6 326 265 113 46 chr9 18654498 18654649 -123616795 + MIR SINE MIR 52 212 -50 239 252 69 30 chr9 18655008 18655139 -123616305 - L1ME LINE L1 -288 5833 5698 282 155 0 42 chr9 18655336 18655407 -123616037 + (TA)n Simple_repeat Simple_repeat 1 68 0 2429 258 58 60 chr9 18655964 18656423 -123615021 - L1MEc LINE L1 -5242 1154 695 2426 78 0 0 chr9 18656423 18656731 -123614713 - AluY SINE Alu -3 308 1 2429 258 58 60 chr9 18656731 18656835 -123614609 - L1MEc LINE L1 -5701 695 592 1968 110 10 17 chr9 18656835 18657134 -123614310 - AluSx SINE Alu -13 299 3 2429 258 58 60 chr9 18657134 18657683 -123613761 - L1MEc LINE L1 -5804 592 44 2236 233 94 0 chr9 18658303 18658836 -123612608 - MER119 DNA MER1_type 0 583 1 40066 70 3 0 chr9 18659289 18665396 -123606048 + L1PA5 LINE L1 30 6154 0 7508 186 44 11 chr9 18665725 18667656 -123603788 + L1 LINE L1 2322 4317 -1829 2521 160 44 2 chr9 18667666 18668116 -123603328 + L1P3 LINE L1 11 479 -5982 3786 81 1 116 chr9 18668116 18668805 -123602639 - LTR66 LTR ERVL 0 610 1 1491 68 16 2 chr9 18668805 18669165 -123602279 - HERVL66 LTR ERVL 0 4329 3881 1708 169 0 3 chr9 18669198 18669488 -123601956 - HERVL66 LTR ERVL -977 3352 3064 496 120 0 0 chr9 18669482 18669557 -123601887 - HERVL66 LTR ERVL -1603 2726 2652 * 2630 86 8 0 chr9 18669539 18669911 -123601533 - HERVL66 LTR ERVL -2532 1797 1423 535 84 0 0 chr9 18669899 18669970 -123601474 - HERVL66 LTR ERVL -3199 1130 1060 * 1161 98 95 116 chr9 18669982 18670267 -123601177 + LTR66 LTR ERVL 332 610 0 12557 142 21 45 chr9 18670415 18671690 -123599754 + L1P3 LINE L1 522 1826 -4635 2439 68 0 3 chr9 18671690 18672000 -123599444 + AluY SINE Alu 1 309 -2 12557 142 21 45 chr9 18672000 18673794 -123597650 + L1P3 LINE L1 1826 3546 -2915 468 0 0 0 chr9 18674486 18674538 -123596906 + (CA)n Simple_repeat Simple_repeat 2 53 0 924 152 81 30 chr9 18674663 18674861 -123596583 - MER2 DNA MER2_type -134 211 4 215 245 0 0 chr9 18674866 18674915 -123596529 + (TATATG)n Simple_repeat Simple_repeat 5 53 0 812 256 156 22 chr9 18675533 18675904 -123595540 + MER39 LTR ERV1 262 682 -25 1036 217 38 0 chr9 18675928 18676163 -123595281 - L1M4 LINE L1 -509 5675 5432 1271 131 54 31 chr9 18676163 18676385 -123595059 - AluSg/x SINE Alu -8 304 78 3621 235 38 9 chr9 18676385 18677656 -123593788 - L1M4 LINE L1 -744 5440 4078 * 12672 186 48 15 chr9 18677652 18677980 -123593464 - L1 LINE L1 -757 6808 6492 2473 72 0 0 chr9 18677980 18678287 -123593157 - AluY SINE Alu -4 307 1 12672 186 48 15 chr9 18678287 18679434 -123592010 - L1 LINE L1 -1073 6492 5384 2159 118 7 10 chr9 18679434 18679740 -123591704 - AluSx SINE Alu -7 305 1 12672 186 48 15 chr9 18679740 18681336 -123590108 - L1 LINE L1 -2181 5384 3842 1912 170 0 19 chr9 18681336 18681647 -123589797 - AluJo SINE Alu -7 305 1 12672 186 48 15 chr9 18681647 18684860 -123586584 - L1 LINE L1 -3723 3842 4 447 201 12 104 chr9 18684865 18684949 -123586495 - L1M4 LINE L1 -2191 5374 5311 1499 209 29 10 chr9 18684949 18685255 -123586189 - AluJb SINE Alu 0 312 1 447 201 12 104 chr9 18685255 18685334 -123586110 - L1M4 LINE L1 -2254 5311 5226 315 233 0 11 chr9 18685347 18685437 -123586007 - L1M4 LINE L1 -2476 5089 5001 346 227 13 0 chr9 18685540 18685615 -123585829 - MIR SINE MIR -91 171 96 2129 119 60 5 chr9 18685615 18685985 -123585459 + L1MA3 LINE L1 5916 6305 0 64 35 0 0 chr9 18685985 18686070 -123585374 + AT_rich Low_complexity Low_complexity 1 85 0 181 206 0 0 chr9 18686301 18686335 -123585109 - MIR SINE MIR -64 144 111 2104 139 0 0 chr9 18686377 18686686 -123584758 + AluSx SINE Alu 1 309 -3 252 290 47 47 chr9 18686994 18687101 -123584343 + L2 LINE L2 3162 3268 -4 2266 121 23 3 chr9 18687593 18687941 -123583503 + THE1A LTR MaLR 1 355 0 11585 94 10 1 chr9 18687941 18689507 -123581937 + THE1A-int LTR MaLR 1 1580 0 2272 125 14 3 chr9 18689507 18689858 -123581586 + THE1A LTR MaLR 1 355 0 920 244 30 61 chr9 18690008 18690164 -123581280 + MIR SINE MIR 7 153 -109 2308 100 0 0 chr9 18690164 18690464 -123580980 + AluSg SINE Alu 1 300 -10 920 244 30 61 chr9 18690464 18690569 -123580875 + MIR SINE MIR 153 260 -2 2725 13 0 0 chr9 18691242 18691544 -123579900 - AluYa5 SINE Alu -9 302 1 5242 101 103 73 chr9 18691559 18693056 -123578388 + pTR5 LTR ERV1 743 2438 0 5212 244 60 19 chr9 18693059 18693085 -123578359 + L1M4 LINE L1 3063 3086 -3085 2479 68 0 0 chr9 18693085 18693379 -123578065 - AluY SINE Alu -17 294 1 5212 244 60 19 chr9 18693379 18695628 -123575816 + L1M4 LINE L1 3086 5428 -743 7957 227 83 19 chr9 18697054 18699219 -123572225 + L1MDa LINE L1 20 2457 -4083 297 0 0 0 chr9 18699219 18699252 -123572192 + (TATAA)n Simple_repeat Simple_repeat 5 37 0 7957 227 83 19 chr9 18699252 18700277 -123571167 + L1MDa LINE L1 2457 3415 -3125 592 347 39 26 chr9 18700570 18700878 -123570566 + L2 LINE L2 2343 2654 -660 488 139 9 35 chr9 18701020 18701135 -123570309 + CT-rich Low_complexity Low_complexity 3 114 0 1835 112 0 0 chr9 18701140 18701381 -123570063 - AluSc SINE Alu -68 241 1 207 328 0 0 chr9 18701887 18701948 -123569496 + CT-rich Low_complexity Low_complexity 2 62 0 32 0 0 0 chr9 18702124 18702156 -123569288 + AT_rich Low_complexity Low_complexity 1 32 0 21 71 0 0 chr9 18702595 18702637 -123568807 + AT_rich Low_complexity Low_complexity 1 42 0 663 57 0 0 chr9 18703453 18703541 -123567903 + (TCTA)n Simple_repeat Simple_repeat 3 90 0 23 0 0 0 chr9 18703667 18703690 -123567754 + AT_rich Low_complexity Low_complexity 1 23 0 442 369 100 17 chr9 18704103 18704575 -123566869 - L3 LINE CR1 -1 1576 1066 1605 158 14 3 chr9 18704871 18705155 -123566289 + L1PA16 LINE L1 5871 6157 -9 1214 184 139 32 chr9 18705642 18705952 -123565492 + MER2 DNA MER2_type 1 343 -1 297 279 132 20 chr9 18706551 18706952 -123564492 + L1M4 LINE L1 4140 4585 -1561 704 293 34 8 chr9 18707038 18707277 -123564167 - LTR33 LTR ERVL -243 278 34 270 311 128 16 chr9 18707295 18707607 -123563837 - L1M4 LINE L1 -1447 4699 4353 428 275 134 40 chr9 18707738 18708359 -123563085 - HAL1b LINE L1 -31 1317 639 238 279 0 0 chr9 18708404 18708465 -123562979 + MLT1I LTR MaLR 73 133 -276 2264 152 40 24 chr9 18708774 18709195 -123562249 + MSTC LTR MaLR 1 428 0 333 188 62 62 chr9 18710048 18710128 -123561316 - L2 LINE L2 -43 3270 3191 1063 141 6 34 chr9 18710303 18710324 -123561120 - AluSq SINE Alu -14 299 279 10381 118 5 8 chr9 18710324 18711003 -123560441 - L1PA10 LINE L1 -6 6477 5797 2258 105 3 0 chr9 18711003 18711299 -123560145 - AluSc SINE Alu -12 297 1 10381 118 5 8 chr9 18711299 18713055 -123558389 - L1PA10 LINE L1 -686 5797 4048 183 42 0 0 chr9 18713055 18713079 -123558365 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1063 141 6 34 chr9 18713079 18713233 -123558211 - AluSq SINE Alu -32 281 128 3943 162 33 4 chr9 18713233 18714043 -123557401 - L1PA10 LINE L1 -2409 4052 3219 624 159 0 0 chr9 18714044 18714157 -123557287 - L1PA2 LINE L1 -1 6154 6042 987 164 0 41 chr9 18714303 18714571 -123556873 - pTR5 LTR ERV1 -1439 999 743 1105 188 12 12 chr9 18714571 18714821 -123556623 - L1PA10 LINE L1 -5622 253 4 228 35 0 0 chr9 18715147 18715176 -123556268 + (GA)n Simple_repeat Simple_repeat 1 29 0 * 378 0 0 0 chr9 18715175 18715217 -123556227 + (TG)n Simple_repeat Simple_repeat 2 43 0 1538 126 79 65 chr9 18715218 18715495 -123555949 - AluSx SINE Alu -31 281 1 1868 163 27 9 chr9 18716215 18716553 -123554891 - MER2 DNA MER2_type 0 344 1 2242 95 0 3 chr9 18718139 18718434 -123553010 + AluSc SINE Alu 1 294 -15 186 197 0 105 chr9 18718488 18718564 -123552880 - MIR SINE MIR -95 167 100 1408 291 223 41 chr9 18718998 18719239 -123552205 + L2 LINE L2 1986 2182 -1131 1230 136 38 34 chr9 18719239 18719474 -123551970 - MER46A DNA MER2_type 0 236 1 1408 291 223 41 chr9 18719474 18720103 -123551341 + L2 LINE L2 2182 3011 -302 235 259 17 0 chr9 18720967 18721025 -123550419 - L1ME4a LINE L1 -82 5973 5915 216 0 0 0 chr9 18721258 18721282 -123550162 + (CA)n Simple_repeat Simple_repeat 2 25 0 2021 125 7 7 chr9 18721351 18721648 -123549796 - AluSx SINE Alu -15 297 1 555 272 140 9 chr9 18722118 18722346 -123549098 - MIR SINE MIR 0 262 5 1004 199 93 72 chr9 18723774 18724106 -123547338 - MER2 DNA MER2_type 0 345 7 926 204 93 75 chr9 18725397 18725730 -123545714 - MER2 DNA MER2_type 0 345 7 2099 113 7 0 chr9 18726919 18727219 -123544225 - AluSp SINE Alu -11 302 1 1939 129 0 3 chr9 18728043 18728329 -123543115 - AluJb SINE Alu -17 295 11 24 0 0 0 chr9 18728478 18728502 -123542942 + AT_rich Low_complexity Low_complexity 1 24 0 378 0 0 0 chr9 18728742 18728784 -123542660 + (CA)n Simple_repeat Simple_repeat 1 42 0 35 41 0 0 chr9 18729600 18729649 -123541795 + AT_rich Low_complexity Low_complexity 1 49 0 181 346 13 39 chr9 18729652 18729730 -123541714 + L2 LINE L2 3121 3196 -76 213 65 0 0 chr9 18729741 18729772 -123541672 + (CA)n Simple_repeat Simple_repeat 2 32 0 231 316 26 15 chr9 18730408 18730498 -123540946 + MIR SINE MIR 57 151 -93 1119 277 93 45 chr9 18731080 18731790 -123539654 - L1ME4a LINE L1 -246 5850 5084 2249 108 0 0 chr9 18731790 18732086 -123539358 - AluSq SINE Alu -17 296 1 1119 277 93 45 chr9 18732086 18732183 -123539261 - L1ME4a LINE L1 -1012 5084 4993 836 181 54 66 chr9 18732239 18732289 -123539155 + L1M4 LINE L1 4591 4640 -1506 2123 102 7 3 chr9 18732289 18732592 -123538852 + AluSc SINE Alu 1 304 -5 836 181 54 66 chr9 18732592 18732800 -123538644 + L1M4 LINE L1 4640 4846 -1300 447 206 61 8 chr9 18732798 18732929 -123538515 - L1ME4a LINE L1 -1391 4689 4552 * 2110 226 71 40 chr9 18732933 18733101 -123538343 - L1MEc LINE L1 -3205 2875 2714 332 22 22 0 chr9 18733101 18733146 -123538298 + (TA)n Simple_repeat Simple_repeat 1 46 0 2217 70 0 55 chr9 18733147 18733459 -123537985 - AluY SINE Alu -11 300 6 2110 226 71 40 chr9 18733459 18734191 -123537253 - L1MEc LINE L1 -3365 2715 1993 332 333 63 43 chr9 18734208 18734559 -123536885 - L1MEc LINE L1 -4817 1265 908 861 133 0 0 chr9 18734562 18734690 -123536754 - AluSx SINE Alu -16 296 169 637 117 0 0 chr9 18734701 18734795 -123536649 - AluSx SINE Alu -218 94 1 344 280 53 15 chr9 18734806 18734938 -123536506 - L1MEc LINE L1 -5055 1015 879 278 290 166 50 chr9 18734953 18735356 -123536088 - L1MEc LINE L1 -5307 763 314 559 352 28 4 chr9 18735381 18735631 -123535813 - L1MEc LINE L1 -5809 261 6 352 305 86 43 chr9 18735840 18736523 -123534921 - L1MEd LINE L1 -4613 1697 957 759 193 40 10 chr9 18736532 18736734 -123534710 - L1MCa LINE L1 -3450 2976 2769 1540 215 79 3 chr9 18736734 18737183 -123534261 - L1MCa LINE L1 -3505 2921 2440 519 165 0 0 chr9 18737185 18737264 -123534180 - Tigger5 DNA MER2_type -3 2320 2242 337 230 27 0 chr9 18737254 18737328 -123534116 + Tigger5 DNA MER2_type 2242 2317 -6 * 503 190 0 0 chr9 18737330 18737409 -123534035 - Tigger5 DNA MER2_type -2244 79 1 867 256 80 23 chr9 18737409 18737799 -123533645 - L1MCa LINE L1 -4009 2419 2008 332 340 9 0 chr9 18737799 18737905 -123533539 - L1MCa LINE L1 -4812 1614 1508 1321 273 90 65 chr9 18738192 18738777 -123532667 - L2 LINE L2 -8 3305 2694 2495 64 0 6 chr9 18738777 18739090 -123532354 - AluY SINE Alu 0 311 1 1321 273 90 65 chr9 18739090 18739402 -123532042 - L2 LINE L2 -619 2694 2391 375 73 0 0 chr9 18739586 18739641 -123531803 + (TCCA)n Simple_repeat Simple_repeat 4 58 0 464 198 10 0 chr9 18740052 18740148 -123531296 - MER5A DNA MER1_type -83 106 10 731 276 43 14 chr9 18740289 18740499 -123530945 + MIR SINE MIR 5 220 -42 21 36 0 0 chr9 18741027 18741055 -123530389 + AT_rich Low_complexity Low_complexity 1 28 0 2006 124 0 0 chr9 18741253 18741563 -123529881 - AluSq SINE Alu 0 310 1 597 227 49 31 chr9 18741573 18741736 -123529708 - L1ME LINE L1 -439 5682 5517 23 0 0 0 chr9 18741753 18741776 -123529668 + AT_rich Low_complexity Low_complexity 1 23 0 353 280 72 16 chr9 18742122 18742247 -123529197 + L2 LINE L2 3136 3267 -5 941 81 188 7 chr9 18743049 18743198 -123528246 - AluY SINE Alu -135 176 1 2326 97 3 0 chr9 18743386 18743685 -123527759 + AluSq SINE Alu 1 300 -13 228 233 97 19 chr9 18743695 18743798 -123527646 - L1ME4a LINE L1 -25 6096 5986 683 270 130 36 chr9 18744048 18744440 -123527004 + Charlie8 DNA MER1_type 86 514 -1903 21 36 0 0 chr9 18744592 18744620 -123526824 + AT_rich Low_complexity Low_complexity 1 28 0 22 94 0 0 chr9 18744881 18744945 -123526499 + AT_rich Low_complexity Low_complexity 1 64 0 21 0 0 0 chr9 18746836 18746857 -123524587 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr9 18748200 18748229 -123523215 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr9 18748610 18748631 -123522813 + AT_rich Low_complexity Low_complexity 1 21 0 2070 137 0 0 chr9 18749775 18750074 -123521370 - AluSx SINE Alu -13 299 1 1077 177 87 159 chr9 18750104 18750135 -123521309 - MLT2B1 LTR ERVL -11 509 477 243 0 0 0 chr9 18750135 18750162 -123521282 + (CA)n Simple_repeat Simple_repeat 2 28 0 1077 177 87 159 chr9 18750162 18750282 -123521162 - MLT2B1 LTR ERVL -43 477 350 2121 145 45 0 chr9 18750282 18750640 -123520804 + L1PA16 LINE L1 5793 6166 0 1077 177 87 159 chr9 18750640 18750876 -123520568 - MLT2B1 LTR ERVL -170 350 149 2171 109 0 0 chr9 18750951 18751235 -123520209 + AluSc SINE Alu 1 284 -25 1602 162 55 14 chr9 18751371 18751661 -123519783 + AluSx SINE Alu 2 303 -9 511 134 0 41 chr9 18752421 18752518 -123518926 - L1PA12 LINE L1 0 6168 6076 290 98 0 0 chr9 18752518 18752559 -123518885 - L1PA7 LINE L1 -97 6057 6017 * 2934 55 10 0 chr9 18752555 18753129 -123518315 - L1P3 LINE L1 -526 5628 5049 186 175 0 159 chr9 18753281 18753344 -123518100 + L2 LINE L2 3210 3262 -10 21 0 0 0 chr9 18753640 18753661 -123517783 + AT_rich Low_complexity Low_complexity 1 21 0 288 77 0 0 chr9 18753824 18753863 -123517581 + (TTCC)n Simple_repeat Simple_repeat 2 40 0 1766 149 6 40 chr9 18753866 18754187 -123517257 - AluSx SINE Alu -2 310 1 28 29 0 0 chr9 18754187 18754222 -123517222 + AT_rich Low_complexity Low_complexity 1 35 0 1648 173 43 13 chr9 18755587 18755887 -123515557 + AluJo SINE Alu 2 310 -2 1384 177 36 61 chr9 18759369 18759730 -123511714 - L1MB8 LINE L1 -2 6176 5825 258 286 133 9 chr9 18760197 18760302 -123511142 - L2 LINE L2 0 3313 3196 1565 224 100 13 chr9 18760488 18760948 -123510496 - L1ME1 LINE L1 -44 6516 6017 379 213 0 0 chr9 18760947 18761027 -123510417 - L1ME1 LINE L1 -930 5610 5531 * 1821 191 66 66 chr9 18761097 18761719 -123509725 - L1ME1 LINE L1 -4005 2535 1914 1436 137 105 190 chr9 18761722 18762190 -123509254 - THE1C LTR MaLR 0 375 1 2484 220 78 27 chr9 18762193 18763016 -123508428 - L1ME1 LINE L1 -4628 1912 1048 1096 124 14 77 chr9 18763024 18763106 -123508338 - Tigger5 DNA MER2_type 0 2323 2237 2220 102 6 22 chr9 18763106 18763419 -123508025 + AluSx SINE Alu 5 312 0 1096 124 14 77 chr9 18763419 18763545 -123507899 - Tigger5 DNA MER2_type -86 2237 2128 2113 102 3 3 chr9 18763559 18763844 -123507600 - AluSc SINE Alu -24 285 1 13972 116 14 62 chr9 18763844 18765601 -123505843 - L1P4 LINE L1 -685 5798 4067 1017 143 7 0 chr9 18765601 18765779 -123505665 - AluSq SINE Alu 0 306 128 13972 116 14 62 chr9 18765779 18766590 -123504854 - L1P4 LINE L1 -2416 4067 3218 * 38220 31 17 1 chr9 18766588 18772619 -123498825 - L1PA2 LINE L1 0 6155 2 8644 214 26 37 chr9 18772621 18775525 -123495919 - L1P4 LINE L1 -3228 3233 248 1489 80 25 10 chr9 18775526 18775757 -123495687 - pTR5 LTR ERV1 -9 2429 172 355 221 0 0 chr9 18775764 18775850 -123495594 - LTR30 LTR ERV1 -98 624 539 2292 107 11 19 chr9 18775850 18776362 -123495082 - pTR5 LTR ERV1 -418 2020 1195 435 83 0 0 chr9 18779600 18779660 -123491784 + (TG)n Simple_repeat Simple_repeat 2 61 0 455 233 123 0 chr9 18779823 18779986 -123491458 + L1MB5 LINE L1 5097 5279 -867 971 124 0 28 chr9 18779988 18780133 -123491311 + AluSx SINE Alu 1 141 -172 3925 126 176 97 chr9 18780136 18781559 -123489885 - pTR5 LTR ERV1 0 2438 743 1091 127 0 18 chr9 18781559 18781725 -123489719 + AluSx SINE Alu 147 309 -3 1025 175 40 58 chr9 18781731 18782056 -123489388 + L1MB5 LINE L1 5289 5607 -567 823 172 0 0 chr9 18782057 18782191 -123489253 + AluJo SINE Alu 1 134 -178 2737 170 11 17 chr9 18782191 18782733 -123488711 + L1MB5 LINE L1 5594 6132 -42 252 0 0 0 chr9 18782895 18782923 -123488521 + (TA)n Simple_repeat Simple_repeat 2 29 0 1235 340 63 18 chr9 18783468 18784244 -123487200 - L2 LINE L2 -541 2773 1963 928 238 103 7 chr9 18784464 18784745 -123486699 + MLT1A1 LTR MaLR 41 348 -17 201 133 0 0 chr9 18785483 18785513 -123485931 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 21 95 0 0 chr9 18785574 18785637 -123485807 + AT_rich Low_complexity Low_complexity 1 63 0 1098 251 29 47 chr9 18786032 18786418 -123485026 + L1MDa LINE L1 3 381 -6159 2119 122 3 0 chr9 18786483 18786778 -123484666 + AluSx SINE Alu 1 296 -16 3301 122 198 102 chr9 18786878 18788142 -123483302 + pTR5 LTR ERV1 892 2438 0 384 262 0 33 chr9 18788145 18788267 -123483177 - AluSq/x SINE Alu -162 141 24 29 70 0 0 chr9 18788469 18788526 -123482918 + AT_rich Low_complexity Low_complexity 1 57 0 291 303 76 21 chr9 18789644 18789789 -123481655 - L2 LINE L2 -50 3263 3111 1163 195 39 3 chr9 18789974 18790256 -123481188 - L1MB4 LINE L1 -173 6007 5716 336 95 0 40 chr9 18790523 18790597 -123480847 + (TA)n Simple_repeat Simple_repeat 1 71 0 285 305 40 8 chr9 18791110 18791265 -123480179 + L1MC/D LINE L1 5671 5829 -326 314 279 25 25 chr9 18791394 18791516 -123479928 + (CATATA)n Simple_repeat Simple_repeat 5 126 0 264 288 81 9 chr9 18791665 18791776 -123479668 + L1ME LINE L1 5628 5746 -424 843 226 6 146 chr9 18791850 18791997 -123479447 + L1M4 LINE L1 4979 5145 -1001 1736 189 7 3 chr9 18791997 18792283 -123479161 - AluJb SINE Alu -25 287 1 843 226 6 146 chr9 18792283 18792564 -123478880 + L1M4 LINE L1 5145 5334 -812 2275 74 6 58 chr9 18792564 18792889 -123478555 + AluY SINE Alu 1 308 -3 843 226 6 146 chr9 18792889 18792946 -123478498 + L1M4 LINE L1 5334 5397 -749 1549 206 27 44 chr9 18792956 18793172 -123478272 - L1MCa LINE L1 -3054 3372 3154 2606 132 31 19 chr9 18793172 18793649 -123477795 - MER31A LTR ERV1 -2 483 1 1549 206 27 44 chr9 18793649 18793995 -123477449 - L1MCa LINE L1 -3272 3154 2820 1790 31 0 14 chr9 18794023 18794246 -123477198 - L1PA4 LINE L1 -1 6154 5935 611 302 42 52 chr9 18794320 18794823 -123476621 - L1MEc LINE L1 -5792 604 107 200 189 0 0 chr9 18795295 18795332 -123476112 + (TG)n Simple_repeat Simple_repeat 2 38 0 5626 58 22 0 chr9 18795706 18796419 -123475025 - L1PA7 LINE L1 -3 6151 5423 214 177 0 48 chr9 18796464 18796526 -123474918 + T-rich Low_complexity Low_complexity 2 60 0 383 301 89 65 chr9 18796907 18797322 -123474122 - L1MCa LINE L1 -4857 1569 1145 248 198 70 0 chr9 18797324 18797410 -123474034 - L1MCa LINE L1 -5158 1271 1180 1960 149 131 13 chr9 18798043 18798426 -123473018 + MSTA LTR MaLR 1 428 0 1578 186 52 0 chr9 18798645 18798914 -123472530 + AluJb SINE Alu 4 286 -26 23 33 0 0 chr9 18798934 18798964 -123472480 + AT_rich Low_complexity Low_complexity 1 30 0 1428 207 0 57 chr9 18799094 18799408 -123472036 - AluJo SINE Alu -16 296 1 26 74 0 0 chr9 18799488 18799542 -123471902 + AT_rich Low_complexity Low_complexity 1 54 0 19302 165 32 22 chr9 18799903 18801981 -123469463 + L1MA3 LINE L1 24 2080 -5644 2105 139 27 27 chr9 18801981 18802356 -123469088 + THE1C LTR MaLR 1 375 0 19302 165 32 22 chr9 18802356 18802669 -123468775 + L1MA3 LINE L1 2080 2388 -5336 2153 126 3 0 chr9 18802669 18802970 -123468474 + AluSx SINE Alu 1 302 -10 19302 165 32 22 chr9 18802970 18807543 -123463901 + L1MA3 LINE L1 2388 7075 -649 1979 134 10 10 chr9 18807543 18807841 -123463603 + AluSx SINE Alu 1 298 -14 19302 165 32 22 chr9 18807841 18808487 -123462957 + L1MA3 LINE L1 7075 7713 -11 238 237 34 34 chr9 18808680 18808739 -123462705 - L3 LINE CR1 -2 1575 1517 406 316 89 32 chr9 18809290 18809399 -123462045 - HAL1b LINE L1 -33 1315 1214 2461 63 0 16 chr9 18809399 18809715 -123461729 - AluY SINE Alu 0 311 1 406 316 89 32 chr9 18809715 18809918 -123461526 - HAL1b LINE L1 -134 1214 985 588 274 70 93 chr9 18809939 18810233 -123461211 - HAL1b LINE L1 -456 892 593 1874 114 16 70 chr9 18810233 18810548 -123460896 + AluSx SINE Alu 6 303 -9 588 274 70 93 chr9 18810548 18811082 -123460362 - HAL1b LINE L1 -755 593 83 2144 128 0 3 chr9 18811145 18811443 -123460001 - AluSc SINE Alu -12 297 1 974 231 33 17 chr9 18811808 18812107 -123459337 - L1MEc LINE L1 -4600 1796 1493 1465 262 31 49 chr9 18812130 18812642 -123458802 - L1MEc LINE L1 -5834 562 60 191 284 52 84 chr9 18812683 18812838 -123458606 + L2 LINE L2 2252 2401 -913 2641 209 46 48 chr9 18812935 18813624 -123457820 - MER76 LTR ERV 0 688 1 267 244 24 37 chr9 18813906 18813988 -123457456 - MLT1H LTR MaLR -330 219 139 294 219 14 0 chr9 18814614 18814687 -123456757 - MLT1I LTR MaLR -20 389 316 256 296 111 40 chr9 18814774 18814973 -123456471 - MLT1I LTR MaLR -123 286 74 283 222 40 10 chr9 18816063 18816162 -123455282 + (TA)n Simple_repeat Simple_repeat 2 103 0 1519 178 59 0 chr9 18816217 18816487 -123454957 + AluJb SINE Alu 6 291 -21 31 0 0 0 chr9 18816491 18816522 -123454922 + AT_rich Low_complexity Low_complexity 1 31 0 2410 71 0 3 chr9 18816608 18816902 -123454542 - AluY SINE Alu -18 293 1 2046 256 59 70 chr9 18817759 18818561 -123452883 - MER21B LTR ERV1 -51 812 20 1631 126 78 3 chr9 18818561 18818854 -123452590 - MER2 DNA MER2_type 0 345 31 28 79 0 0 chr9 18821798 18821861 -123449583 + AT_rich Low_complexity Low_complexity 1 63 0 23 0 0 0 chr9 18822020 18822043 -123449401 + AT_rich Low_complexity Low_complexity 1 23 0 2532 128 0 20 chr9 18822746 18823144 -123448300 + MLT1B LTR MaLR 1 390 0 2079 123 3 16 chr9 18823200 18823508 -123447936 - AluSx SINE Alu -8 304 1 21 0 0 0 chr9 18823787 18823808 -123447636 + AT_rich Low_complexity Low_complexity 1 21 0 2106 177 100 26 chr9 18823890 18824504 -123446940 - MER39 LTR ERV1 0 707 2 21 89 0 0 chr9 18824591 18824647 -123446797 + AT_rich Low_complexity Low_complexity 1 56 0 183 184 0 0 chr9 18824733 18824771 -123446673 + (TAA)n Simple_repeat Simple_repeat 2 39 0 388 248 141 34 chr9 18824812 18824961 -123446483 - MIR SINE MIR -72 190 26 1050 211 15 0 chr9 18825032 18825236 -123446208 + AluJo SINE Alu 83 289 -23 1588 180 68 3 chr9 18825941 18826280 -123445164 - MLT1A1 LTR MaLR 0 365 5 4212 78 2 0 chr9 18828774 18829327 -123442117 + MER41A LTR ERV1 1 554 0 801 229 6 0 chr9 18829593 18829768 -123441676 + MER5B DNA MER1_type 3 178 0 3835 101 4 7 chr9 18830146 18830702 -123440742 - MER41A LTR ERV1 0 554 1 22 35 0 0 chr9 18830991 18831020 -123440424 + AT_rich Low_complexity Low_complexity 1 29 0 615 183 86 34 chr9 18831195 18831370 -123440074 - LTR45B LTR ERV1 0 489 306 2188 168 73 58 chr9 18831745 18832292 -123439152 + MER34B LTR ERV1 11 565 0 1021 236 101 42 chr9 18832628 18833087 -123438357 + MER34 LTR ERV1 1 707 0 2150 110 0 3 chr9 18833101 18833401 -123438043 - AluSg SINE Alu -11 299 1 785 295 70 4 chr9 18833419 18833663 -123437781 + MIR SINE MIR 3 262 0 1480 203 7 14 chr9 18834341 18834637 -123436807 - AluJo SINE Alu -18 294 1 244 281 55 0 chr9 18834806 18834952 -123436492 + L1M4 LINE L1 5175 5328 -818 982 262 70 61 chr9 18835501 18835928 -123435516 + MLT2B1 LTR ERVL 90 520 0 754 288 81 100 chr9 18836019 18836638 -123434806 + ERVL LTR ERVL 3913 4519 -1245 2030 148 0 0 chr9 18836743 18837040 -123434404 - AluSx SINE Alu -15 297 1 602 344 56 5 chr9 18837051 18837541 -123433903 + ERVL LTR ERVL 4536 5074 -690 674 291 184 14 chr9 18837588 18837703 -123433741 + L2 LINE L2 1730 1824 -1490 2187 114 0 0 chr9 18837703 18838002 -123433442 - AluSx SINE Alu -13 299 1 674 291 184 14 chr9 18838002 18838244 -123433200 + L2 LINE L2 1824 2148 -1166 1858 161 60 52 chr9 18838246 18838631 -123432813 - MSTD LTR MaLR 0 396 9 221 313 27 36 chr9 18838632 18838744 -123432700 + L2 LINE L2 2165 2275 -1039 1288 113 72 0 chr9 18838758 18838953 -123432491 - AluSp SINE Alu -18 295 87 962 308 90 13 chr9 18838953 18839330 -123432114 + L2 LINE L2 2266 2671 -643 464 326 114 48 chr9 18839298 18839755 -123431689 + L2 LINE L2 2827 3313 0 * 292 368 124 27 chr9 18840061 18840360 -123431084 + L3 LINE CR1 64 391 -1186 471 314 150 55 chr9 18840388 18840808 -123430636 + L3 LINE CR1 676 1165 -412 2422 74 0 10 chr9 18840808 18841117 -123430327 + AluSx SINE Alu 1 306 -6 471 314 150 55 chr9 18841117 18841262 -123430182 + L3 LINE CR1 1165 1295 -282 422 246 67 101 chr9 18841268 18841484 -123429960 + L2 LINE L2 3055 3262 -51 2355 88 0 0 chr9 18841484 18841779 -123429665 + AluY SINE Alu 1 295 -16 422 246 67 101 chr9 18841779 18841830 -123429614 + L2 LINE L2 3262 3313 0 365 354 107 43 chr9 18841804 18842084 -123429360 + L3 LINE CR1 1279 1576 -1 * 772 298 94 20 chr9 18843156 18844030 -123427414 - L1ME LINE L1 -652 5518 4578 3688 230 73 47 chr9 18844031 18844480 -123426964 + L1MD2 LINE L1 95 531 -6009 1868 162 6 49 chr9 18844480 18844826 -123426618 + MER1B DNA MER1_type 3 333 -4 3688 230 73 47 chr9 18844826 18845394 -123426050 + L1MD2 LINE L1 531 1152 -5388 2031 133 35 41 chr9 18845394 18845762 -123425682 + MER47A DNA MER2_type 1 366 0 3688 230 73 47 chr9 18845762 18845957 -123425487 + L1MD2 LINE L1 1152 1340 -5200 228 220 20 0 chr9 18845993 18846043 -123425401 - LTR52 LTR ERVL -40 381 331 2270 217 77 10 chr9 18846056 18847023 -123424421 + L1MD2 LINE L1 5201 6236 -517 263 286 106 19 chr9 18847501 18847662 -123423782 + MARNA DNA Mariner 386 560 -26 1854 162 14 0 chr9 18847772 18848068 -123423376 + AluSx SINE Alu 1 300 -12 500 140 10 30 chr9 18848532 18848632 -123422812 - FLAM_C SINE Alu -9 134 37 205 130 0 56 chr9 18850235 18850289 -123421155 + (TTTTC)n Simple_repeat Simple_repeat 5 55 0 21 36 0 0 chr9 18851595 18851623 -123419821 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr9 18852464 18852487 -123418957 + AT_rich Low_complexity Low_complexity 1 23 0 1817 133 0 0 chr9 18852881 18853145 -123418299 - AluSx SINE Alu -14 298 35 9293 195 95 11 chr9 18853146 18857072 -123414372 - L1 LINE L1 -2611 4954 13 973 218 148 45 chr9 18857584 18857942 -123413502 + MSTD LTR MaLR 1 395 -1 1244 233 53 28 chr9 18858142 18858503 -123412941 + MLT1A2 LTR MaLR 1 370 -4 1748 207 115 28 chr9 18858505 18859076 -123412368 + MLT1A2-int LTR MaLR 1 738 -633 350 255 43 0 chr9 18859192 18859286 -123412158 + MLT1A2-int LTR MaLR 686 783 -952 229 185 37 0 chr9 18859483 18859537 -123411907 + (TA)n Simple_repeat Simple_repeat 1 56 0 393 278 70 70 chr9 18859837 18860064 -123411380 - L1MEd LINE L1 -5555 564 338 248 227 136 0 chr9 18860271 18860359 -123411085 - L1MEd LINE L1 -6004 115 16 466 333 90 27 chr9 18860823 18861123 -123410321 - L2 LINE L2 0 3313 2995 575 208 32 8 chr9 18861278 18861403 -123410041 - MIR SINE MIR -3 259 132 214 381 92 12 chr9 18861565 18861738 -123409706 - MIR SINE MIR -70 192 6 36 23 0 0 chr9 18861868 18861911 -123409533 + AT_rich Low_complexity Low_complexity 1 43 0 286 333 50 21 chr9 18862590 18862731 -123408713 - MIR SINE MIR -109 153 9 29 28 0 0 chr9 18862795 18862831 -123408613 + AT_rich Low_complexity Low_complexity 1 36 0 5804 153 22 8 chr9 18863381 18864677 -123406767 - L1MA4 LINE L1 -9 6291 4982 250 223 106 98 chr9 18865282 18865547 -123405897 + L1MEd LINE L1 895 1161 -4958 299 276 41 24 chr9 18865561 18865684 -123405760 + HAL1 LINE L1 1483 1607 -900 2270 108 0 3 chr9 18865702 18866008 -123405436 + AluSx SINE Alu 1 305 -7 2375 77 0 3 chr9 18866252 18866551 -123404893 - AluSx SINE Alu -14 298 1 622 151 0 0 chr9 18866582 18866688 -123404756 - AluJo SINE Alu -2 310 205 * 792 214 13 19 chr9 18866686 18866845 -123404599 - AluJo SINE Alu -154 158 1 385 283 35 17 chr9 18866847 18867020 -123404424 - L1MDa LINE L1 -2185 4355 4180 * 1597 246 75 11 chr9 18867013 18867675 -123403769 - L1MDa LINE L1 -2792 3748 3044 616 204 125 79 chr9 18867750 18867966 -123403478 - L1MDa LINE L1 -4618 1922 1697 2133 119 0 7 chr9 18868523 18868825 -123402619 - AluSq SINE Alu -13 300 1 232 266 16 0 chr9 18870759 18870823 -123400621 + (TATATG)n Simple_repeat Simple_repeat 1 65 0 689 271 6 12 chr9 18871018 18871188 -123400256 + MER5B DNA MER1_type 3 171 -7 310 305 80 53 chr9 18871443 18871594 -123399850 + L1MEd LINE L1 300 454 -5962 1273 241 75 0 chr9 18871635 18871955 -123399489 - L2 LINE L2 -1001 2313 1970 183 198 9 135 chr9 18871991 18872102 -123399342 - L2 LINE L2 -1466 1848 1752 2781 231 53 22 chr9 18872271 18872624 -123398820 + L1MB8 LINE L1 2731 3072 -3106 1137 221 145 15 chr9 18872624 18872955 -123398489 + MLT1A2 LTR MaLR 1 374 0 2781 231 53 22 chr9 18872955 18873254 -123398190 + L1MB8 LINE L1 3072 3360 -2818 2246 67 0 51 chr9 18873254 18873570 -123397874 + AluY SINE Alu 1 300 -11 2781 231 53 22 chr9 18873570 18874006 -123397438 + L1MB8 LINE L1 3360 6112 -66 2744 244 72 21 chr9 18873977 18875365 -123396079 + L1MEd LINE L1 1623 3155 -3271 * 2101 122 3 3 chr9 18875365 18875660 -123395784 - AluSx SINE Alu -17 295 1 2744 244 72 21 chr9 18875660 18875801 -123395643 + L1MEd LINE L1 3155 3287 -3139 415 79 79 0 chr9 18875801 18875864 -123395580 + L1MB1 LINE L1 6101 6168 0 761 277 52 84 chr9 18875868 18876366 -123395078 + L1MEd LINE L1 4194 4675 -1751 203 313 44 50 chr9 18876787 18876969 -123394475 - L2 LINE L2 -1217 2097 1917 255 227 15 0 chr9 18876981 18877047 -123394397 - MLT1K LTR MaLR 0 588 522 581 277 103 30 chr9 18877286 18877557 -123393887 - MER20B DNA MER1_type -492 291 1 8076 56 1 0 chr9 18878322 18879287 -123392157 + LTR5 LTR ERVK 1 966 -3 1476 49 0 0 chr9 18882183 18882368 -123389076 - L1PA3 LINE L1 -102 6053 5869 877 37 0 0 chr9 18882368 18882471 -123388973 + L1PA2 LINE L1 6049 6155 0 1831 164 0 3 chr9 18885992 18886284 -123385160 + AluJo SINE Alu 1 291 -21 1495 234 141 34 chr9 18886487 18887076 -123384368 - MLT1E1 LTR MaLR -2 652 1 24 0 0 0 chr9 18887176 18887200 -123384244 + AT_rich Low_complexity Low_complexity 1 24 0 279 291 191 18 chr9 18887622 18887818 -123383626 - MIR SINE MIR -18 244 19 280 364 143 0 chr9 18888818 18889049 -123382395 - L2 LINE L2 -497 2817 2554 35 54 0 0 chr9 18890409 18890465 -123380979 + AT_rich Low_complexity Low_complexity 1 56 0 2170 155 10 30 chr9 18892508 18892901 -123378543 - MLT1B LTR MaLR -5 385 1 666 230 15 7 chr9 18893092 18893227 -123378217 - MIR SINE MIR -123 139 4 181 313 20 81 chr9 18893391 18893490 -123377954 + MIR SINE MIR 25 117 -91 221 175 25 50 chr9 18894051 18894131 -123377313 + (TATAA)n Simple_repeat Simple_repeat 1 78 0 205 388 68 19 chr9 18894693 18894893 -123376551 - MIR SINE MIR -57 205 2 673 248 140 84 chr9 18895017 18895468 -123375976 - MLT1H LTR MaLR -2 547 72 26 30 0 0 chr9 18895714 18895747 -123375697 + AT_rich Low_complexity Low_complexity 1 33 0 21 36 0 0 chr9 18895826 18895854 -123375590 + AT_rich Low_complexity Low_complexity 1 28 0 526 263 25 38 chr9 18896702 18896862 -123374582 + MIR SINE MIR 104 261 -1 198 103 0 0 chr9 18896874 18896903 -123374541 + (CAG)n Simple_repeat Simple_repeat 2 30 0 21 71 0 0 chr9 18897188 18897230 -123374214 + AT_rich Low_complexity Low_complexity 1 42 0 24 67 0 0 chr9 18898461 18898506 -123372938 + AT_rich Low_complexity Low_complexity 1 45 0 4141 122 5 0 chr9 18900717 18901341 -123370103 + L1PA15 LINE L1 5527 6153 -12 384 254 85 25 chr9 18902030 18902148 -123369296 + MER5A DNA MER1_type 64 188 -1 501 255 85 7 chr9 18902767 18902920 -123368524 + MIR SINE MIR 60 224 -38 183 80 0 0 chr9 18902951 18902976 -123368468 + (TAG)n Simple_repeat Simple_repeat 2 26 0 229 175 0 0 chr9 18904501 18904541 -123366903 - MIR SINE MIR -10 252 213 313 258 60 60 chr9 18905334 18905485 -123365959 + L2 LINE L2 628 778 -2536 492 269 54 24 chr9 18905492 18905659 -123365785 + MER20B DNA MER1_type 4 175 -608 4617 292 78 36 chr9 18905699 18907528 -123363916 + L2 LINE L2 800 2746 -567 2286 97 3 0 chr9 18907528 18907827 -123363617 + AluSx SINE Alu 4 303 -9 4617 292 78 36 chr9 18907827 18908125 -123363319 + L2 LINE L2 2746 3030 -283 30 27 0 0 chr9 18908308 18908345 -123363099 + AT_rich Low_complexity Low_complexity 1 37 0 259 313 0 0 chr9 18908432 18908529 -123362915 + polypurine Low_complexity Low_complexity 1 97 0 2373 83 0 3 chr9 18908529 18908831 -123362613 + AluY SINE Alu 1 301 -10 1175 199 65 98 chr9 18908845 18908857 -123362587 - L1 LINE L1 -868 5278 5267 14619 127 31 14 chr9 18908857 18911236 -123360208 + Tigger1 DNA MER2_type 1 2418 0 1175 199 65 98 chr9 18911236 18911462 -123359982 - L1 LINE L1 -879 5267 5035 352 139 25 25 chr9 18911462 18911541 -123359903 - FLAM_A SINE Alu 0 133 55 1175 199 65 98 chr9 18911541 18911834 -123359610 - L1 LINE L1 -1111 5035 4725 * 4359 168 47 2 chr9 18911821 18912638 -123358806 + L1MB1 LINE L1 5315 6167 -1 349 286 133 0 chr9 18912862 18912967 -123358477 - MER63A DNA MER1_type -3 207 89 846 233 0 6 chr9 18912971 18913143 -123358301 + AluJo SINE Alu 127 297 -15 336 375 77 14 chr9 18913500 18913785 -123357659 + L1M4 LINE L1 2683 2985 -3161 1950 265 19 15 chr9 18914621 18915157 -123356287 + L1MB7 LINE L1 858 1395 -4886 445 271 95 49 chr9 18915301 18915752 -123355692 + L1MB7 LINE L1 4603 5074 -1276 409 294 69 28 chr9 18915902 18916120 -123355324 + L1MB7 LINE L1 5287 5513 -837 682 296 122 39 chr9 18916152 18916487 -123354957 + L1MB7 LINE L1 5591 5953 -2059 279 369 48 0 chr9 18916488 18916591 -123354853 + MER91A DNA MER1_type 79 186 -10 21 0 0 0 chr9 18917419 18917440 -123354004 + AT_rich Low_complexity Low_complexity 1 21 0 200 158 26 0 chr9 18918148 18918186 -123353258 + L2 LINE L2 3269 3307 -6 211 316 18 0 chr9 18919187 18919244 -123352200 + L2 LINE L2 3244 3301 -12 234 345 95 0 chr9 18921233 18921349 -123350095 + L2 LINE L2 3140 3266 -6 21 0 0 0 chr9 18922493 18922514 -123348930 + AT_rich Low_complexity Low_complexity 1 21 0 1098 189 58 22 chr9 18923394 18923684 -123347760 + L1MB7 LINE L1 6075 6379 -9 452 314 6 34 chr9 18924154 18924329 -123347115 - L2 LINE L2 -6 3307 3138 26 0 0 0 chr9 18925136 18925162 -123346282 + AT_rich Low_complexity Low_complexity 1 26 0 201 132 0 0 chr9 18925197 18925235 -123346209 + (TTTC)n Simple_repeat Simple_repeat 3 40 0 208 311 155 10 chr9 18925404 18925507 -123345937 - L2 LINE L2 -4 3309 3192 3197 175 34 6 chr9 18925513 18926158 -123345286 + L1MB3 LINE L1 5485 6147 -36 27 0 0 0 chr9 18927106 18927133 -123344311 + AT_rich Low_complexity Low_complexity 1 27 0 5633 170 61 57 chr9 18927207 18927293 -123344151 + Tigger3b DNA MER2_type 1 85 -2943 1983 92 3 20 chr9 18927293 18927598 -123343846 - L1PA13 LINE L1 0 6163 5864 5633 170 61 57 chr9 18927598 18927808 -123343636 + Tigger3b DNA MER2_type 85 293 -2735 1798 183 10 3 chr9 18927808 18928109 -123343335 - AluJb SINE Alu -9 303 1 5633 170 61 57 chr9 18928109 18929037 -123342407 + Tigger3b DNA MER2_type 293 1231 0 1336 201 84 26 chr9 18929218 18929561 -123341883 - MLT1A1 LTR MaLR -2 363 1 192 403 89 8 chr9 18930393 18930517 -123340927 + L3b LINE CR1 1374 1507 -76 23 33 0 0 chr9 18932905 18932935 -123338509 + AT_rich Low_complexity Low_complexity 1 30 0 397 289 198 17 chr9 18936346 18936695 -123334749 + L2 LINE L2 2807 3218 -95 2836 198 69 19 chr9 18936695 18937373 -123334071 + Cheshire DNA MER1_type 1 712 -1708 2138 205 36 26 chr9 18937426 18937924 -123333520 + MLT1D LTR MaLR 1 503 -2 268 211 0 0 chr9 18937925 18937982 -123333462 - L1M4 LINE L1 -2389 3757 3701 2964 247 95 24 chr9 18938006 18939365 -123332079 + L1M4 LINE L1 3844 5298 -848 767 161 39 0 chr9 18939809 18939964 -123331480 - L1MA6 LINE L1 -4 6296 6136 2837 192 9 4 chr9 18939966 18940518 -123330926 - L1PA16 LINE L1 -16 6150 5596 1783 240 64 30 chr9 18941200 18941792 -123329652 - L1MD2 LINE L1 -2 6357 5746 8821 144 16 21 chr9 18941811 18943341 -123328103 + ERVL LTR ERVL 3905 5426 -338 1884 188 53 5 chr9 18943370 18943763 -123327681 + MLT2D LTR ERVL 3 414 0 1194 241 21 10 chr9 18943763 18944054 -123327390 - L1MD2 LINE L1 -626 5733 5440 676 214 204 67 chr9 18944291 18944590 -123326854 - MLT1E LTR MaLR -8 585 246 342 98 0 0 chr9 18944614 18944665 -123326779 + (CA)n Simple_repeat Simple_repeat 1 51 0 324 267 0 0 chr9 18944667 18944742 -123326702 - MLT1E LTR MaLR -467 75 1 1466 156 103 6 chr9 18945302 18945622 -123325822 + L1PA16 LINE L1 5811 6161 -5 2239 76 20 10 chr9 18945777 18946078 -123325366 - AluY SINE Alu -7 304 1 473 292 129 45 chr9 18946153 18946380 -123325064 + L1M4 LINE L1 2866 3072 -3074 1854 160 0 25 chr9 18946380 18946699 -123324745 + AluJb SINE Alu 2 312 0 473 292 129 45 chr9 18946699 18946875 -123324569 + L1M4 LINE L1 3072 3303 -2843 459 333 78 48 chr9 18946918 18946991 -123324453 + L1M4 LINE L1 3382 3451 -2695 1776 183 0 7 chr9 18946991 18947291 -123324153 + AluJo SINE Alu 1 298 -14 459 333 78 48 chr9 18947291 18947638 -123323806 + L1M4 LINE L1 3451 3815 -2331 307 308 34 8 chr9 18947881 18947998 -123323446 + MLT1J LTR MaLR 305 424 -87 2784 286 89 7 chr9 18948060 18949206 -123322238 + L2 LINE L2 1896 3129 -184 1621 224 43 18 chr9 18949271 18949708 -123321736 - MER39 LTR ERV1 0 707 260 305 160 26 24 chr9 18949696 18949785 -123321659 - MER39 LTR ERV1 -557 87 1 * 387 235 0 59 chr9 18949804 18949906 -123321538 + L2 LINE L2 3218 3313 0 1160 220 33 84 chr9 18950001 18950075 -123321369 + MLT1C LTR MaLR 6 82 -385 2369 64 6 19 chr9 18950075 18950389 -123321055 + AluY SINE Alu 1 310 -1 1160 220 33 84 chr9 18950389 18950801 -123320643 + MLT1C LTR MaLR 82 467 0 763 133 21 183 chr9 18950886 18950996 -123320448 - MER106A DNA MER1_type -2 234 194 2330 104 0 19 chr9 18950996 18951312 -123320132 - AluSg SINE Alu 0 310 1 763 133 21 183 chr9 18951312 18951480 -123319964 - MER106A DNA MER1_type -42 194 1 734 252 67 52 chr9 18951568 18951897 -123319547 + MLT1I LTR MaLR 28 361 -48 1456 158 91 8 chr9 18951906 18952051 -123319393 - AluJb SINE Alu -25 287 155 198 0 0 0 chr9 18952051 18952073 -123319371 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1456 158 91 8 chr9 18952073 18952192 -123319252 - AluJb SINE Alu -157 155 1 348 259 29 41 chr9 18953221 18953391 -123318053 - MLT2E LTR ERVL -14 614 447 384 77 0 0 chr9 18954209 18954261 -123317183 + (GA)n Simple_repeat Simple_repeat 2 53 0 416 250 79 29 chr9 18955063 18955203 -123316241 + MIR SINE MIR 110 256 -6 241 301 159 0 chr9 18955308 18955421 -123316023 - MIR SINE MIR -130 132 2 2078 119 3 3 chr9 18956208 18956502 -123314942 - AluSx SINE Alu -18 294 1 230 204 0 0 chr9 18957082 18957126 -123314318 - MLT2B1 LTR ERVL -4 410 367 1039 231 61 48 chr9 18957183 18957582 -123313862 - MLT2B1 LTR ERVL -58 406 1 917 183 122 5 chr9 18957814 18958027 -123313417 + MER90 LTR ERV1 3 240 -374 340 182 0 15 chr9 18958117 18958183 -123313261 + MER90 LTR ERV1 233 297 -317 2573 68 0 0 chr9 18958891 18959200 -123312244 - AluY SINE Alu -2 309 1 283 93 0 0 chr9 18959816 18959859 -123311585 - Alu SINE Alu -10 290 248 2040 114 7 17 chr9 18959859 18960148 -123311296 - AluSx SINE Alu -26 286 1 4350 175 31 48 chr9 18960393 18961632 -123309812 + L1MC3 LINE L1 6336 7655 -130 466 207 300 0 chr9 18961647 18961797 -123309647 + MER90 LTR ERV1 405 599 -15 2410 84 0 54 chr9 18962366 18962736 -123308708 - L1PA8 LINE L1 0 6172 5823 482 229 207 43 chr9 18963030 18963218 -123308226 + MIR SINE MIR 2 220 -42 208 343 38 48 chr9 18963363 18963468 -123307976 + MIR SINE MIR 34 137 -71 2141 108 0 7 chr9 18963741 18964037 -123307407 - AluSg SINE Alu -16 294 1 27 62 0 0 chr9 18964842 18964890 -123306554 + AT_rich Low_complexity Low_complexity 1 48 0 1633 113 4 4 chr9 18965140 18965371 -123306073 - AluSg/x SINE Alu -1 309 79 613 306 44 6 chr9 18966036 18966216 -123305228 - MIR SINE MIR -68 194 8 189 0 0 0 chr9 18966446 18966467 -123304977 + (A)n Simple_repeat Simple_repeat 1 21 0 370 312 196 0 chr9 18966885 18967074 -123304370 - MIR SINE MIR -28 234 9 338 347 42 19 chr9 18967726 18967885 -123303559 + MIR SINE MIR 16 174 -73 253 316 61 9 chr9 18968009 18968123 -123303321 + L2 LINE L2 3153 3272 0 2808 160 12 60 chr9 18968858 18969503 -123301941 - L1MB8 LINE L1 -11 6167 5554 237 375 55 0 chr9 18970475 18970603 -123300841 - MIR3 SINE MIR -71 137 3 299 372 67 6 chr9 18970770 18970950 -123300494 - MER91A DNA MER1_type -3 193 3 229 209 0 0 chr9 18971130 18971173 -123300271 + (CA)n Simple_repeat Simple_repeat 1 43 0 442 250 64 76 chr9 18971338 18971510 -123299934 - MER5B DNA MER1_type -1 177 8 1581 163 101 91 chr9 18971734 18971954 -123299490 - MLT1B LTR MaLR 0 390 163 2020 156 7 0 chr9 18971954 18972262 -123299182 - AluSx SINE Alu -2 310 1 1581 163 101 91 chr9 18972262 18972427 -123299017 - MLT1B LTR MaLR -227 163 1 43521 35 23 1 chr9 18972527 18978546 -123292898 + L1PA3 LINE L1 3 6153 -2 694 220 19 125 chr9 18979088 18979276 -123292168 + MIR SINE MIR 27 181 -81 14106 124 13 6 chr9 18979276 18982107 -123289337 + L1PA10 LINE L1 3322 6157 -11 694 220 19 125 chr9 18982107 18982182 -123289262 + MIR SINE MIR 181 262 0 321 252 187 19 chr9 18982613 18982720 -123288724 - L2 LINE L2 -2 3270 3146 1975 194 19 6 chr9 18983023 18983383 -123288061 - MLT1A1 LTR MaLR 0 365 1 2337 147 124 15 chr9 18983455 18983857 -123287587 + MLT2B2 LTR ERVL 1 446 -69 237 196 0 0 chr9 18983866 18983917 -123287527 + (TG)n Simple_repeat Simple_repeat 1 51 0 465 303 40 58 chr9 18983994 18984271 -123287173 + L2 LINE L2 1662 1933 -1381 2150 242 123 26 chr9 18984275 18984853 -123286591 - L1ME3A LINE L1 0 6170 5495 2540 62 0 3 chr9 18984853 18985162 -123286282 + AluY SINE Alu 1 308 -3 2150 242 123 26 chr9 18985162 18985363 -123286081 - L1ME3A LINE L1 -675 5495 5315 610 126 44 44 chr9 18985355 18985490 -123285954 - L1MA10 LINE L1 -2 6332 6198 * 991 185 18 44 chr9 18985479 18985706 -123285738 - L1MA10 LINE L1 -88 6246 6026 1495 273 70 35 chr9 18985847 18986729 -123284715 - L1ME3A LINE L1 -1621 4525 3613 980 183 0 6 chr9 18986756 18986925 -123284519 - AluJb SINE Alu -14 298 131 701 149 13 18 chr9 18986928 18987150 -123284294 + CT-rich Low_complexity Low_complexity 1 220 0 795 153 0 8 chr9 18987150 18987443 -123284001 - FLAM_C SINE Alu 0 292 1 21 0 0 0 chr9 18987448 18987469 -123283975 + AT_rich Low_complexity Low_complexity 1 21 0 266 322 91 0 chr9 18987471 18987592 -123283852 - L1ME3A LINE L1 -2560 3586 3455 242 313 61 0 chr9 18987623 18987722 -123283722 - L2 LINE L2 -588 2726 2622 189 213 0 98 chr9 18988214 18988275 -123283169 + L3b LINE CR1 1276 1330 -253 270 81 0 0 chr9 18989302 18989339 -123282105 + (A)n Simple_repeat Simple_repeat 1 37 0 366 344 27 6 chr9 18989352 18989535 -123281909 - MER5A DNA MER1_type -2 187 1 458 239 42 7 chr9 18989956 18990098 -123281346 + Charlie8 DNA MER1_type 83 229 -2188 540 182 27 9 chr9 18990169 18990279 -123281165 + MER69A DNA AcHobo 66 177 0 255 228 0 0 chr9 18990407 18990464 -123280980 + Charlie8 DNA MER1_type 404 460 -1957 21 0 0 0 chr9 18991650 18991671 -123279773 + AT_rich Low_complexity Low_complexity 1 21 0 1262 246 116 37 chr9 18991772 18992421 -123279023 + L1M4 LINE L1 3660 4359 -1787 820 283 79 46 chr9 18992424 18993088 -123278356 + L1ME LINE L1 1407 2137 -4444 302 326 58 22 chr9 18993131 18993579 -123277865 + L1ME LINE L1 2259 2722 -3999 1839 248 63 94 chr9 18993594 18994344 -123277100 + L1ME LINE L1 3093 3891 -2649 548 163 0 0 chr9 18994344 18994430 -123277014 + AluSg/x SINE Alu 218 303 -7 1839 248 63 94 chr9 18994430 18994635 -123276809 + L1ME LINE L1 3891 4101 -2439 1246 197 7 30 chr9 18994654 18994923 -123276521 - AluJo SINE Alu -21 291 29 1453 270 38 44 chr9 18994961 18995549 -123275895 + L1ME LINE L1 5592 6171 -393 2569 46 0 3 chr9 18995619 18995923 -123275521 + AluY SINE Alu 1 303 -8 373 272 25 62 chr9 18996286 18996448 -123274996 + MIR SINE MIR 52 207 -55 1672 177 15 103 chr9 18996515 18996911 -123274533 + MLT1A1 LTR MaLR 5 365 0 755 299 69 14 chr9 18998167 18998601 -123272843 - L1ME4a LINE L1 -3 6118 5661 * 3862 189 13 14 chr9 18998599 18999376 -123272068 - L1MB8 LINE L1 0 6178 5403 300 361 66 0 chr9 18999388 18999554 -123271890 - L1ME4a LINE L1 -460 5661 5485 313 281 58 53 chr9 18999596 18999767 -123271677 - L1ME4a LINE L1 -756 5390 5219 2359 46 63 0 chr9 18999815 19000099 -123271345 - AluY SINE Alu -9 302 1 1950 72 4 16 chr9 19001219 19001469 -123269975 - L1PA5 LINE L1 0 6154 5908 2423 197 19 17 chr9 19001498 19001964 -123269480 + MLT1C LTR MaLR 1 467 0 211 296 159 0 chr9 19001974 19002062 -123269382 + MIR SINE MIR 89 190 -72 952 214 5 11 chr9 19002164 19002351 -123269093 - MER5A DNA MER1_type 0 189 4 303 28 0 0 chr9 19002768 19002804 -123268640 + (TA)n Simple_repeat Simple_repeat 1 36 0 7466 63 0 16 chr9 19002806 19003862 -123267582 - L1PA7 LINE L1 -11 6143 5093 466 113 0 0 chr9 19003862 19003924 -123267520 - AluSg/x SINE Alu -36 274 213 439 264 100 106 chr9 19004161 19004502 -123266942 - L2 LINE L2 0 3272 2934 2189 113 0 0 chr9 19005645 19005937 -123265507 + AluSg SINE Alu 1 292 -18 1987 123 35 3 chr9 19006195 19006479 -123264965 - AluSx SINE Alu -19 293 1 228 248 80 18 chr9 19007006 19007119 -123264325 - LTR67 LTR ERVL -10 547 428 234 62 0 0 chr9 19008022 19008054 -123263390 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 244 241 52 0 chr9 19008129 19008187 -123263257 + MIR3 SINE MIR 94 154 -54 2383 108 30 49 chr9 19009011 19009207 -123262237 - THE1B LTR MaLR 0 364 177 5636 18 5 0 chr9 19009207 19009816 -123261628 - L1PA3 LINE L1 0 6155 5544 2383 108 30 49 chr9 19009816 19009988 -123261456 - THE1B LTR MaLR -187 177 3 710 271 143 15 chr9 19010453 19010781 -123260663 - MLT1I LTR MaLR -39 370 1 388 275 94 110 chr9 19011720 19012571 -123258873 + L1M2 LINE L1 587 1362 -5487 292 237 248 25 chr9 19013873 19014071 -123257373 + MIR SINE MIR 18 259 -3 1853 138 65 0 chr9 19014654 19014945 -123256499 - AluSq SINE Alu -3 310 1 2470 184 15 32 chr9 19015604 19016077 -123255367 - MLT1C LTR MaLR -2 465 1 1727 216 33 25 chr9 19016223 19016585 -123254859 + MLT1A1 LTR MaLR 1 365 0 22 0 0 0 chr9 19017051 19017073 -123254371 + AT_rich Low_complexity Low_complexity 1 22 0 1954 132 0 7 chr9 19017188 19017488 -123253956 + AluSx SINE Alu 5 302 0 1057 215 31 110 chr9 19018449 19018868 -123252576 + MER88 LTR ERVL 79 464 0 23 78 0 0 chr9 19019330 19019381 -123252063 + AT_rich Low_complexity Low_complexity 1 51 0 2960 86 8 5 chr9 19019454 19019828 -123251616 - THE1C LTR MaLR 0 375 1 1875 138 25 0 chr9 19019890 19020190 -123251254 + AluSx SINE Alu 1 307 0 2027 130 3 25 chr9 19020561 19020877 -123250567 + AluSx SINE Alu 1 309 -3 345 206 246 40 chr9 19021099 19021225 -123250219 - MLT1J1 LTR MaLR -145 301 150 2056 220 85 5 chr9 19021360 19021806 -123249638 + MLT1E2 LTR MaLR 137 618 -8 383 207 41 90 chr9 19021825 19021970 -123249474 - MLT1J1 LTR MaLR -306 140 3 203 326 10 20 chr9 19021995 19022093 -123249351 + (TATATG)n Simple_repeat Simple_repeat 4 100 0 795 194 8 0 chr9 19022165 19022294 -123249150 - FRAM SINE Alu -46 130 1 27 29 0 0 chr9 19022303 19022337 -123249107 + AT_rich Low_complexity Low_complexity 1 34 0 1583 154 70 7 chr9 19023738 19024023 -123247421 - AluJb SINE Alu -9 303 1 2569 151 75 0 chr9 19024918 19025388 -123246056 - MLT2B2 LTR ERVL -10 505 1 390 271 102 0 chr9 19025473 19025650 -123245794 + MER113 DNA MER1_type? 249 443 -78 4183 170 46 30 chr9 19025658 19026504 -123244940 + MER21B LTR ERV1 3 862 -1 303 325 115 50 chr9 19026976 19027404 -123244040 + L2 LINE L2 2638 3087 -185 1354 89 54 10 chr9 19027423 19027626 -123243818 + L1PA8 LINE L1 5960 6171 -1 225 269 0 0 chr9 19027757 19027809 -123243635 + L2 LINE L2 3262 3313 0 665 141 204 0 chr9 19028010 19028152 -123243292 - MIR SINE MIR -66 196 26 377 294 192 16 chr9 19028325 19028757 -123242687 + L1ME4a LINE L1 5406 5913 -208 2075 114 21 3 chr9 19030207 19030496 -123240948 + AluSx SINE Alu 3 296 -16 444 304 16 0 chr9 19030850 19030975 -123240469 - L2 LINE L2 -10 3262 3136 296 358 49 59 chr9 19031545 19031749 -123239695 + L2 LINE L2 2986 3187 -85 476 252 37 22 chr9 19031758 19031893 -123239551 - MIR SINE MIR -96 166 30 363 344 70 23 chr9 19031928 19032143 -123239301 + L1ME LINE L1 4795 5019 -1127 226 278 152 7 chr9 19032412 19032563 -123238881 + L1ME LINE L1 5561 5733 -388 1773 151 135 46 chr9 19036181 19036544 -123234900 + L1MB3 LINE L1 5682 6096 -87 2218 105 3 16 chr9 19036544 19036850 -123234594 + AluSp SINE Alu 1 302 -11 1773 151 135 46 chr9 19036850 19036944 -123234500 + L1MB3 LINE L1 6096 6180 -3 323 247 35 24 chr9 19037054 19037139 -123234305 - MIR3 SINE MIR -29 179 94 615 276 70 25 chr9 19037182 19037425 -123234019 + MIR SINE MIR 9 262 0 1647 181 14 20 chr9 19037943 19038236 -123233208 - AluJo SINE Alu -13 299 9 2172 104 0 0 chr9 19039050 19039353 -123232091 - AluSg SINE Alu 0 306 4 197 261 0 0 chr9 19039389 19039435 -123232009 + MER5B DNA MER1_type 132 177 -1 2095 165 8 3 chr9 19040066 19040441 -123231003 - Tigger3(Golem) DNA MER2_type -1 3028 2652 405 209 47 0 chr9 19040467 19040553 -123230891 - Tigger3(Golem) DNA MER2_type -2939 90 1 192 291 18 18 chr9 19040873 19040928 -123230516 - L2 LINE L2 -19 3253 3199 2170 78 4 0 chr9 19041106 19041377 -123230067 - AluY SINE Alu -5 306 35 445 259 89 15 chr9 19042105 19042240 -123229204 - MIR SINE MIR -76 186 42 269 255 163 0 chr9 19042377 19042530 -123228914 - MER102a DNA MER1_type 0 330 153 224 325 36 0 chr9 19043054 19043137 -123228307 + MIR SINE MIR 46 131 -131 215 299 76 57 chr9 19044902 19045059 -123226385 - MIR SINE MIR -45 217 58 298 248 239 9 chr9 19045349 19045462 -123225982 + MER5A DNA MER1_type 45 183 -6 1219 157 54 92 chr9 19045627 19045996 -123225448 - L1MB8 LINE L1 -17 6161 5807 252 0 0 0 chr9 19047261 19047289 -123224155 + (A)n Simple_repeat Simple_repeat 1 28 0 390 249 69 90 chr9 19047528 19047717 -123223727 - MIR SINE MIR -8 254 70 2362 87 0 16 chr9 19048340 19048650 -123222794 + AluSc SINE Alu 1 305 -4 557 269 56 20 chr9 19050000 19050249 -123221195 - L1MC4a LINE L1 -1872 5936 5679 263 253 36 0 chr9 19050398 19050481 -123220963 - MER103 DNA DNA -2 164 79 1096 189 22 40 chr9 19051073 19051295 -123220149 + MER20 DNA MER1_type 1 218 -1 433 300 75 6 chr9 19051432 19051592 -123219852 + MER46C DNA MER2_type 7 177 -161 216 0 0 0 chr9 19051759 19051783 -123219661 + (TG)n Simple_repeat Simple_repeat 1 24 0 518 244 210 6 chr9 19051997 19052173 -123219271 - MIR SINE MIR -6 256 45 326 226 42 103 chr9 19052241 19052365 -123219079 - L1ME4a LINE L1 -226 5895 5794 2275 104 3 0 chr9 19052365 19052663 -123218781 + AluSq SINE Alu 5 303 -10 326 226 42 103 chr9 19052663 19052799 -123218645 - L1ME4a LINE L1 -327 5794 5651 24 53 0 0 chr9 19053032 19053070 -123218374 + AT_rich Low_complexity Low_complexity 1 38 0 342 286 0 0 chr9 19053223 19053300 -123218144 - L2 LINE L2 -7 3265 3189 726 265 22 0 chr9 19053311 19053496 -123217948 - MIR SINE MIR 0 262 74 261 267 63 91 chr9 19053524 19053809 -123217635 - L2 LINE L2 -665 2649 2373 348 315 63 31 chr9 19054052 19054274 -123217170 - L1ME4a LINE L1 -274 5847 5619 692 119 8 0 chr9 19055899 19056017 -123215427 + (TTTCC)n Simple_repeat Simple_repeat 1 119 0 291 157 0 0 chr9 19056005 19056056 -123215388 + C-rich Low_complexity Low_complexity 1 51 0 * 186 271 21 104 chr9 19056419 19056515 -123214929 - L2 LINE L2 -1237 2077 1990 1839 251 111 48 chr9 19056561 19056671 -123214773 - L1MC4 LINE L1 0 8042 7940 288 0 0 0 chr9 19056671 19056703 -123214741 + (CA)n Simple_repeat Simple_repeat 2 33 0 1839 251 111 48 chr9 19056703 19057768 -123213676 - L1MC4 LINE L1 -102 7940 6794 291 260 47 123 chr9 19058410 19058645 -123212799 - MIR SINE MIR -25 237 21 402 21 0 0 chr9 19061377 19061424 -123210020 + (TG)n Simple_repeat Simple_repeat 1 47 0 419 335 35 17 chr9 19062084 19062257 -123209187 + MIR3 SINE MIR 31 206 -2 218 356 75 40 chr9 19062881 19063055 -123208389 + MER5A DNA MER1_type 10 189 0 352 306 117 27 chr9 19065394 19065616 -123205828 - L1ME4a LINE L1 -264 5857 5616 284 327 181 0 chr9 19066997 19067196 -123204248 + MIR SINE MIR 2 236 -26 193 288 55 27 chr9 19067507 19067580 -123203864 + MIR SINE MIR 44 118 -90 3029 91 21 2 chr9 19067946 19068376 -123203068 - L1PA12 LINE L1 -2 6166 5729 457 302 29 7 chr9 19070534 19070673 -123200771 + MIR SINE MIR 11 152 -110 2654 29 0 3 chr9 19070840 19071148 -123200296 + AluY SINE Alu 1 307 -4 600 318 69 31 chr9 19071279 19071568 -123199876 - L2 LINE L2 -14 3299 3000 2100 246 107 20 chr9 19072101 19073088 -123198356 + L1ME1 LINE L1 5064 6134 -32 338 179 0 0 chr9 19074340 19074407 -123197037 + L1MB8 LINE L1 5804 5870 -308 7318 106 16 22 chr9 19074410 19080090 -123191354 - L1PA7 LINE L1 -4 6465 718 255 332 145 37 chr9 19080262 19080377 -123191067 - MIR SINE MIR 0 262 161 228 35 0 0 chr9 19080377 19080406 -123191038 + (TC)n Simple_repeat Simple_repeat 2 30 0 255 332 145 37 chr9 19080406 19080504 -123190940 - MIR SINE MIR -101 161 26 299 209 174 0 chr9 19080514 19080600 -123190844 + MIR SINE MIR 117 217 -45 225 340 29 10 chr9 19080624 19080727 -123190717 + MIR SINE MIR 139 243 -19 2505 140 26 28 chr9 19080781 19081210 -123190234 + Tigger2a DNA MER2_type 1 428 -6 25 0 0 0 chr9 19081562 19081587 -123189857 + AT_rich Low_complexity Low_complexity 1 25 0 1367 168 134 11 chr9 19082067 19082329 -123189115 - AluSg SINE Alu -13 297 4 2176 89 45 0 chr9 19083331 19083622 -123187822 - AluSg SINE Alu -6 304 1 194 208 19 0 chr9 19083950 19084003 -123187441 + (TG)n Simple_repeat Simple_repeat 1 54 0 308 293 99 36 chr9 19084068 19084542 -123186902 - L1M4 LINE L1 -1377 5005 4502 521 234 21 0 chr9 19084566 19084711 -123186733 - L1MEc LINE L1 -4688 1708 1561 484 255 64 69 chr9 19084908 19085484 -123185960 - L1M4 LINE L1 -2887 3495 2923 895 151 14 0 chr9 19085579 19085718 -123185726 + MER46A DNA MER2_type 6 146 -90 234 288 77 30 chr9 19085737 19085970 -123185474 - L1M4 LINE L1 -3571 2811 2568 403 228 78 72 chr9 19086034 19086214 -123185230 - L1M4 LINE L1 -3927 2457 2277 380 276 126 40 chr9 19086222 19086396 -123185048 - HAL1 LINE L1 -1157 1350 1162 455 216 108 32 chr9 19086550 19086699 -123184745 + MSTC LTR MaLR 3 156 -270 26 30 0 0 chr9 19088568 19088601 -123182843 + AT_rich Low_complexity Low_complexity 1 33 0 640 92 0 10 chr9 19089662 19089760 -123181684 + AluY SINE Alu 209 305 -6 204 312 174 37 chr9 19090131 19090240 -123181204 - L2 LINE L2 -28 3244 3121 334 303 86 34 chr9 19090403 19090578 -123180866 + MIR SINE MIR 14 197 -65 597 260 45 0 chr9 19090640 19090794 -123180650 + MIR SINE MIR 76 236 -26 209 206 93 52 chr9 19092861 19092958 -123178486 + MIR SINE MIR 84 184 -78 216 267 57 76 chr9 19092979 19093084 -123178360 + MIR SINE MIR 51 153 -109 457 237 118 24 chr9 19093169 19093338 -123178106 + Charlie8 DNA MER1_type 84 268 -2149 277 393 16 0 chr9 19093580 19093702 -123177742 + MIR3 SINE MIR 64 187 -21 451 311 178 22 chr9 19093746 19093845 -123177599 + L3 LINE CR1 446 528 -1049 2373 106 0 0 chr9 19093845 19094156 -123177288 + AluSx SINE Alu 1 311 -1 451 311 178 22 chr9 19094156 19094471 -123176973 + L3 LINE CR1 528 925 -652 313 331 126 11 chr9 19094728 19094903 -123176541 + MIR SINE MIR 3 197 -65 692 249 63 39 chr9 19094929 19095214 -123176230 - L1M4 LINE L1 -3317 2829 2538 2249 80 20 7 chr9 19095669 19095968 -123175476 - AluSg SINE Alu -7 303 1 25 0 0 0 chr9 19096345 19096370 -123175074 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr9 19097004 19097027 -123174417 + AT_rich Low_complexity Low_complexity 1 23 0 193 333 0 13 chr9 19097399 19097474 -123173970 + MIR SINE MIR 102 175 -87 1479 238 90 38 chr9 19097932 19098466 -123172978 - L1MC4 LINE L1 0 8042 7481 2555 226 125 60 chr9 19098468 19099511 -123171933 - L1MC4a LINE L1 -795 7013 5897 306 0 0 0 chr9 19099511 19099545 -123171899 + (TG)n Simple_repeat Simple_repeat 2 35 0 2555 226 125 60 chr9 19099545 19099570 -123171874 - L1MC4a LINE L1 -1911 5897 5875 1616 225 43 11 chr9 19099604 19100049 -123171395 - L1MC4a LINE L1 -2033 5775 5317 2723 215 103 14 chr9 19100165 19101412 -123170032 - L1MB4 LINE L1 0 6180 4828 1711 200 0 3 chr9 19101618 19101923 -123169521 - AluJo SINE Alu -8 304 1 2927 212 85 23 chr9 19102055 19102750 -123168694 - L1MD2 LINE L1 -1 6358 5613 1391 249 49 73 chr9 19102750 19103377 -123168067 - LTR9 LTR ERV1 0 612 1 2927 212 85 23 chr9 19103377 19103422 -123168022 - L1MD2 LINE L1 -746 5613 5572 928 180 38 11 chr9 19103788 19103971 -123167473 - MER5A DNA MER1_type 0 189 2 1385 136 0 0 chr9 19104383 19104604 -123166840 + L1MA2 LINE L1 6084 6304 0 317 294 37 37 chr9 19105751 19105887 -123165557 + L2 LINE L2 2175 2310 -1004 1834 138 33 16 chr9 19106107 19106411 -123165033 - AluJb SINE Alu -3 309 1 251 119 0 0 chr9 19107167 19107209 -123164235 - MLT1H LTR MaLR -26 541 500 1827 142 4 0 chr9 19107227 19107518 -123163926 - AluSx SINE Alu 0 305 14 990 242 77 79 chr9 19107519 19108011 -123163433 - MLT1H LTR MaLR -48 501 11 2398 76 3 0 chr9 19108630 19108934 -123162510 + AluY SINE Alu 1 305 -6 2195 125 0 0 chr9 19109289 19109592 -123161852 + AluSx SINE Alu 1 303 -9 183 42 0 0 chr9 19110590 19110614 -123160830 + (TA)n Simple_repeat Simple_repeat 1 24 0 21511 39 3 0 chr9 19110614 19114040 -123157404 - L1PA4 LINE L1 -19 6136 2707 5791 89 27 27 chr9 19114463 19115660 -123155784 + L1PA8A LINE L1 4936 6131 0 848 294 119 21 chr9 19115887 19116398 -123155046 + L1MCc LINE L1 24 584 -5839 2293 255 73 32 chr9 19116513 19117819 -123153625 + L1MCc LINE L1 808 2179 -4762 272 143 0 143 chr9 19118042 19118098 -123153346 - MLT2C1 LTR ERVL 0 397 355 1679 199 32 18 chr9 19118144 19118485 -123152959 - MLT2C1 LTR ERVL -51 346 1 2705 22 0 0 chr9 19118512 19118829 -123152615 - L1PA2 LINE L1 -1092 5054 4738 7809 13 5 0 chr9 19118829 19119917 -123151527 + L1PA2 LINE L1 5063 6154 -1 5068 159 29 24 chr9 19121462 19122447 -123148997 + L1MC3 LINE L1 6700 7689 -96 942 297 127 10 chr9 19122492 19122969 -123148475 + L2 LINE L2 2781 3313 0 228 350 49 55 chr9 19123043 19123206 -123148238 + L2 LINE L2 3106 3267 -5 492 262 123 24 chr9 19124919 19125171 -123146273 + L1MC4a LINE L1 5574 5850 -1958 1990 140 7 3 chr9 19125328 19125620 -123145824 + AluSx SINE Alu 1 293 -19 2570 89 20 3 chr9 19125696 19126045 -123145399 - THE1A LTR MaLR 0 355 1 1033 155 107 19 chr9 19127089 19127295 -123144149 - MSTA LTR MaLR 0 428 205 198 0 0 0 chr9 19127829 19127851 -123143593 + (TTTTTA)n Simple_repeat Simple_repeat 2 23 0 274 335 73 34 chr9 19128912 19129091 -123142353 + MIR3 SINE MIR 2 187 -21 2467 109 11 16 chr9 19129375 19129752 -123141692 - THE1C LTR MaLR 0 375 1 2289 104 0 0 chr9 19130189 19130487 -123140957 - AluSg SINE Alu -12 298 1 222 302 71 32 chr9 19131101 19131227 -123140217 + MIR SINE MIR 16 146 -62 2214 109 3 3 chr9 19131840 19132142 -123139302 + AluSc SINE Alu 1 302 -7 285 340 106 11 chr9 19132718 19132983 -123138461 - L1MC/D LINE L1 -2000 5808 5519 308 102 68 0 chr9 19133800 19133859 -123137585 + MADE1 DNA Mariner 18 80 0 190 220 85 34 chr9 19133956 19134015 -123137429 + MIR SINE MIR 83 144 -64 412 252 70 7 chr9 19134191 19134334 -123137110 + L1MEd LINE L1 28 179 -5940 559 301 132 83 chr9 19134457 19135462 -123135982 + L1 LINE L1 4167 5221 -925 24 32 0 0 chr9 19136202 19136233 -123135211 + AT_rich Low_complexity Low_complexity 1 31 0 8404 173 41 5 chr9 19136371 19138497 -123132947 + L1P4 LINE L1 3595 5795 -370 2401 146 54 2 chr9 19138515 19138925 -123132519 + L1PA15 LINE L1 5727 6157 -8 23 33 0 0 chr9 19138947 19138977 -123132467 + AT_rich Low_complexity Low_complexity 1 30 0 196 363 71 18 chr9 19139907 19140020 -123131424 - L3 LINE CR1 -3 1574 1456 204 178 22 0 chr9 19140125 19140170 -123131274 + MIR SINE MIR 85 130 -78 306 0 0 0 chr9 19142646 19142680 -123128764 + (CA)n Simple_repeat Simple_repeat 2 35 0 384 319 136 6 chr9 19142763 19142932 -123128512 - L2 LINE L2 -3 3269 3079 1671 86 10 6 chr9 19143059 19143357 -123128087 + THE1C LTR MaLR 1 375 0 1467 164 62 17 chr9 19143459 19143751 -123127693 + L1MB3 LINE L1 5587 5891 -292 669 174 294 0 chr9 19143786 19144032 -123127412 - MER44D DNA MER2_type -6 599 7 295 276 20 31 chr9 19144057 19144155 -123127289 + MIR SINE MIR 166 262 0 3034 231 44 24 chr9 19144276 19145768 -123125676 - L1ME2 LINE L1 -9 6224 4696 300 137 0 0 chr9 19145788 19145839 -123125605 + (CCCA)n Simple_repeat Simple_repeat 2 52 0 986 242 64 58 chr9 19145842 19146185 -123125259 - L1ME2 LINE L1 -2005 4210 3866 * 5227 238 50 63 chr9 19146183 19148155 -123123289 - L1ME2 LINE L1 -2806 3409 1413 272 175 0 0 chr9 19148155 19148212 -123123232 - FLAM_A SINE Alu 0 133 77 5227 238 50 63 chr9 19148212 19148652 -123122792 - L1ME2 LINE L1 -4802 1413 969 2182 162 0 16 chr9 19148652 19149023 -123122421 - MER47A DNA MER2_type 0 366 2 5227 238 50 63 chr9 19149023 19149983 -123121461 - L1ME2 LINE L1 -5246 969 45 316 347 102 14 chr9 19150223 19150439 -123121005 - L3 LINE CR1 -137 1440 1206 218 261 0 0 chr9 19150438 19150484 -123120960 + MIR SINE MIR 98 143 -65 * 184 290 100 50 chr9 19150517 19150617 -123120827 - L2 LINE L2 -25 3247 3143 338 247 70 95 chr9 19151376 19151406 -123120038 - MER5A DNA MER1_type -35 154 125 1755 168 0 24 chr9 19151406 19151704 -123119740 + AluJb SINE Alu 1 291 -21 338 247 70 95 chr9 19151704 19151831 -123119613 - MER5A DNA MER1_type -64 125 1 246 217 203 58 chr9 19152034 19152172 -123119272 + MIR SINE MIR 78 235 -27 1868 160 0 23 chr9 19152469 19152775 -123118669 + AluJo SINE Alu 1 299 -13 31 26 0 0 chr9 19152861 19152899 -123118545 + AT_rich Low_complexity Low_complexity 1 38 0 2380 153 15 5 chr9 19153260 19153659 -123117785 - MER57A LTR ERV1 0 403 1 230 185 62 74 chr9 19154439 19154520 -123116924 - L1ME LINE L1 -280 5841 5762 909 150 61 33 chr9 19154667 19154847 -123116597 + MLT2B2 LTR ERVL 323 507 -8 253 256 103 26 chr9 19155027 19155144 -123116300 - MIR SINE MIR -100 162 37 24 32 0 0 chr9 19155463 19155494 -123115950 + AT_rich Low_complexity Low_complexity 1 31 0 551 208 15 8 chr9 19155494 19155624 -123115820 - L1PA7 LINE L1 -3 6151 6021 1531 236 43 89 chr9 19156764 19157773 -123113671 - L1M4c LINE L1 -4795 2164 1192 2169 266 33 55 chr9 19158242 19159177 -123112267 - L1M4c LINE L1 -5652 1207 3 207 254 139 74 chr9 19159244 19159366 -123112078 + L2 LINE L2 3184 3313 0 806 316 48 30 chr9 19159600 19160140 -123111304 + L1ME3A LINE L1 5312 5816 -305 434 270 142 0 chr9 19160284 19160432 -123111012 + MER58C DNA MER1_type 47 215 0 533 317 55 35 chr9 19160511 19160908 -123110536 + LTR16C LTR ERVL 87 491 0 32 0 0 0 chr9 19161403 19161435 -123110009 + AT_rich Low_complexity Low_complexity 1 32 0 10103 94 11 4 chr9 19161446 19163683 -123107761 - L1PA7 LINE L1 -4 6150 3894 931 157 19 6 chr9 19164191 19164350 -123107094 + MLT1A2 LTR MaLR 1 161 -213 381 58 0 0 chr9 19164387 19164439 -123107005 + (GA)n Simple_repeat Simple_repeat 2 53 0 784 233 5 43 chr9 19164454 19164664 -123106780 + MLT1A2 LTR MaLR 187 388 -2 191 314 20 0 chr9 19164864 19164915 -123106529 + L2 LINE L2 3221 3272 0 258 316 120 26 chr9 19165419 19165536 -123105908 - L2 LINE L2 -37 3235 3108 254 233 19 78 chr9 19165880 19165983 -123105461 + MIR SINE MIR 30 126 -82 26 0 0 0 chr9 19166216 19166242 -123105202 + AT_rich Low_complexity Low_complexity 1 26 0 1221 51 0 6 chr9 19166244 19166401 -123105043 - L1PA3 LINE L1 -3 6152 5997 4339 18 0 2 chr9 19166401 19166899 -123104545 + L1PA3 LINE L1 5458 5954 -201 188 242 189 21 chr9 19167418 19167513 -123103931 - MIR SINE MIR -84 178 68 1891 178 21 23 chr9 19167516 19167943 -123103501 + L1MB7 LINE L1 5744 6169 -15 1242 195 8 41 chr9 19168426 19168672 -123102772 - MER8 DNA MER2_type 0 239 2 185 160 0 40 chr9 19169135 19169185 -123102259 + (TATG)n Simple_repeat Simple_repeat 4 51 0 3710 55 2 1 chr9 19169849 19170326 -123101118 + L1PA7 LINE L1 5670 6150 -4 263 336 66 8 chr9 19171029 19171151 -123100293 + L2 LINE L2 3162 3290 -23 242 161 0 81 chr9 19171378 19171440 -123100004 - MLT2B1 LTR ERVL 0 520 464 384 240 0 0 chr9 19171442 19171542 -123099902 + (TA)n Simple_repeat Simple_repeat 1 100 0 231 100 0 50 chr9 19171551 19171591 -123099853 - MLT2C1 LTR ERVL -48 366 329 297 0 0 0 chr9 19171607 19171640 -123099804 + (GA)n Simple_repeat Simple_repeat 2 34 0 1559 196 27 15 chr9 19171644 19171980 -123099464 - MLT2C1 LTR ERVL -57 340 1 234 246 90 126 chr9 19171985 19172152 -123099292 - MIR3 SINE MIR -9 199 39 270 0 0 0 chr9 19173431 19173461 -123097983 + (TATTG)n Simple_repeat Simple_repeat 2 31 0 375 351 48 11 chr9 19173775 19173963 -123097481 - MIR SINE MIR -50 212 18 220 262 0 0 chr9 19176488 19176530 -123094914 + polypyrimidine Low_complexity Low_complexity 4 45 0 288 0 0 0 chr9 19176535 19176567 -123094877 + (CA)n Simple_repeat Simple_repeat 2 33 0 293 264 99 25 chr9 19176977 19177098 -123094346 + L3 LINE CR1 1404 1533 -44 1887 158 7 10 chr9 19177335 19177633 -123093811 - AluJb SINE Alu -15 297 1 2330 67 7 7 chr9 19179041 19179341 -123092103 - AluY SINE Alu -11 300 1 354 379 49 5 chr9 19179777 19179980 -123091464 + MIR SINE MIR 20 231 -31 2115 119 3 0 chr9 19180630 19180938 -123090506 - AluSx SINE Alu 0 310 2 267 305 181 58 chr9 19181591 19181883 -123089561 - L2 LINE L2 0 3272 2945 486 287 126 51 chr9 19184165 19184423 -123087021 + L3 LINE CR1 1134 1418 -159 381 58 0 0 chr9 19184423 19184475 -123086969 + (TG)n Simple_repeat Simple_repeat 2 53 0 486 287 126 51 chr9 19184475 19184509 -123086935 + L3 LINE CR1 1418 1448 -129 212 139 0 23 chr9 19185434 19185477 -123085967 + (TTTA)n Simple_repeat Simple_repeat 4 45 0 955 182 0 13 chr9 19185488 19185647 -123085797 - AluJo SINE Alu -37 275 119 9483 160 7 8 chr9 19185667 19187357 -123084087 - L1PA13 LINE L1 0 6163 4440 2417 86 0 0 chr9 19187357 19187658 -123083786 + AluY SINE Alu 1 301 -10 9483 160 7 8 chr9 19187658 19188434 -123083010 - L1PA13 LINE L1 -1723 4440 3665 677 226 15 0 chr9 19188434 19188567 -123082877 - AluJo SINE Alu -177 135 1 612 257 8 55 chr9 19188979 19189216 -123082228 - MER58B DNA MER1_type -37 304 79 6660 35 0 7 chr9 19189286 19190131 -123081313 - L1PA5 LINE L1 -1 6153 5315 2530 32 12 17 chr9 19190127 19190472 -123080972 + L1PA5 LINE L1 5000 5342 -804 * 2210 128 0 3 chr9 19191245 19191557 -123079887 + AluSx SINE Alu 2 312 0 298 253 197 8 chr9 19192455 19192635 -123078809 + MIR SINE MIR 3 262 0 250 289 0 0 chr9 19192996 19193048 -123078396 - MER91 DNA MER1_type -1 139 88 216 0 0 0 chr9 19195088 19195112 -123076332 + (CAAAG)n Simple_repeat Simple_repeat 4 27 0 1296 183 88 60 chr9 19196227 19196681 -123074763 + MLT1C LTR MaLR 1 467 0 382 292 46 20 chr9 19196681 19196833 -123074611 - MIR SINE MIR -67 141 3 22 0 0 0 chr9 19196930 19196952 -123074492 + AT_rich Low_complexity Low_complexity 1 22 0 397 295 132 37 chr9 19198573 19198868 -123072576 + L2 LINE L2 2950 3272 0 1380 147 99 3 chr9 19199475 19199767 -123071677 - MER33 DNA MER1_type -4 320 1 202 325 70 26 chr9 19200505 19200619 -123070825 + L2 LINE L2 3154 3272 0 2323 103 0 0 chr9 19201055 19201357 -123070087 + AluY SINE Alu 1 302 -9 201 280 155 36 chr9 19201480 19201648 -123069796 + L2 LINE L2 2776 2963 -351 475 302 182 26 chr9 19201797 19202259 -123069185 + L2 LINE L2 2712 3241 -72 667 275 132 52 chr9 19202334 19202841 -123068603 + L2 LINE L2 2637 3310 -3 381 264 54 31 chr9 19202848 19202977 -123068467 + L2 LINE L2 3182 3313 0 217 359 99 15 chr9 19203216 19203347 -123068097 - MIR SINE MIR -101 161 20 587 138 8 115 chr9 19203444 19203574 -123067870 + MLT1E LTR MaLR 49 164 -429 * 1299 251 44 58 chr9 19203569 19204051 -123067393 + MLT1E LTR MaLR 119 593 0 267 213 0 0 chr9 19204297 19204344 -123067100 + L2 LINE L2 3251 3297 -16 8194 205 31 8 chr9 19205285 19208210 -123063234 - L1MB3 LINE L1 0 6183 3191 215 250 118 0 chr9 19208351 19208419 -123063025 + MIR SINE MIR 107 182 -80 694 249 88 0 chr9 19209731 19209924 -123061520 + MER63A DNA MER1_type 1 210 0 1043 202 62 87 chr9 19210465 19210821 -123060623 - MLT1A2 LTR MaLR -7 367 21 349 237 76 46 chr9 19211060 19211191 -123060253 - MIR SINE MIR -4 258 124 444 234 211 11 chr9 19211219 19211394 -123060050 - L2 LINE L2 -29 3284 3075 1967 254 88 19 chr9 19211452 19212030 -123059414 - L2 LINE L2 -474 2840 2223 231 312 26 13 chr9 19212173 19212250 -123059194 + MER5A DNA MER1_type 111 188 -1 223 351 30 38 chr9 19212336 19212467 -123058977 + MIR SINE MIR 13 142 -120 608 202 9 0 chr9 19212934 19213043 -123058401 + MER5B DNA MER1_type 1 110 -68 651 269 197 3 chr9 19213044 19213430 -123058014 - L1ME3A LINE L1 0 6170 5710 7588 11 0 0 chr9 19213448 19214494 -123056950 - L1HS LINE L1 -3 6152 5107 782 228 45 4 chr9 19214492 19214709 -123056735 - L1ME3A LINE L1 -444 5677 5467 * 265 350 65 74 chr9 19214723 19215032 -123056412 + L2 LINE L2 2955 3260 -12 21 36 0 0 chr9 19215720 19215748 -123055696 + AT_rich Low_complexity Low_complexity 1 28 0 785 259 8 38 chr9 19215765 19216004 -123055440 - MLT2E LTR ERVL -396 232 1 263 323 0 73 chr9 19217495 19217619 -123053825 + L2 LINE L2 3078 3192 -80 1501 197 20 24 chr9 19217683 19217978 -123053466 - AluJo SINE Alu -18 294 1 228 336 16 105 chr9 19218087 19218334 -123053110 + L2 LINE L2 2987 3211 -61 234 299 23 58 chr9 19221186 19221273 -123050171 - MIR SINE MIR -158 104 21 281 316 40 46 chr9 19221544 19221696 -123049748 + L3 LINE CR1 1418 1568 -9 309 279 150 29 chr9 19221763 19221903 -123049541 + MER5A DNA MER1_type 30 186 -3 788 164 0 20 chr9 19222779 19222931 -123048513 - MER47A DNA MER2_type -198 168 20 1744 152 6 67 chr9 19222991 19223352 -123048092 - MLT2B3 LTR ERVL -215 339 1 269 303 118 0 chr9 19223648 19223724 -123047720 - MIR3 SINE MIR -14 194 110 213 125 0 62 chr9 19224437 19224485 -123046959 + (TTTTG)n Simple_repeat Simple_repeat 4 48 0 456 211 131 46 chr9 19224579 19224754 -123046690 - MIR SINE MIR -12 250 61 980 70 31 0 chr9 19225885 19226013 -123045431 - L1MA2 LINE L1 -9 6295 6164 213 286 78 52 chr9 19226013 19226090 -123045354 + L2 LINE L2 3176 3254 -18 264 274 137 0 chr9 19227821 19227938 -123043506 - MIR SINE MIR -56 206 74 2159 136 0 3 chr9 19230502 19230812 -123040632 + AluSx SINE Alu 1 309 -3 2729 99 8 19 chr9 19231025 19231389 -123040055 - THE1B LTR MaLR -4 360 1 1083 248 91 56 chr9 19231493 19231675 -123039769 + L1M4 LINE L1 4219 4393 -1753 2421 80 0 0 chr9 19231675 19231974 -123039470 + AluY SINE Alu 1 299 -12 1083 248 91 56 chr9 19231974 19232385 -123039059 + L1M4 LINE L1 4393 4833 -1313 2447 91 3 0 chr9 19332727 19333036 -122938408 - AluY SINE Alu -1 310 1 24 53 0 0 chr9 19333162 19333200 -122938244 + AT_rich Low_complexity Low_complexity 1 38 0 268 378 61 12 chr9 19334832 19334996 -122936448 - L2 LINE L2 0 3272 3101 363 302 9 9 chr9 19336554 19336670 -122934774 - MER5A DNA MER1_type -72 117 2 444 280 56 0 chr9 19338201 19338326 -122933118 - L2 LINE L2 -5 3308 3177 422 176 0 0 chr9 19340023 19340091 -122931353 + AluS SINE Alu 1 68 -245 200 35 35 0 chr9 19340212 19340241 -122931203 + (TA)n Simple_repeat Simple_repeat 2 31 0 1848 93 0 4 chr9 19340577 19340824 -122930620 + AluSc SINE Alu 1 246 -63 211 150 0 25 chr9 19341090 19341130 -122930314 + (TA)n Simple_repeat Simple_repeat 1 39 0 287 274 186 0 chr9 19341356 19341458 -122929986 - L2 LINE L2 -9 3304 3184 252 319 164 43 chr9 19343372 19343488 -122927956 - L2 LINE L2 0 3272 3143 1110 309 124 45 chr9 19343702 19344676 -122926768 - L2 LINE L2 -1285 2029 979 216 309 12 36 chr9 19345378 19345462 -122925982 + L2 LINE L2 2587 2668 -646 251 231 29 87 chr9 19345578 19345682 -122925762 + MIR3 SINE MIR 67 164 -44 268 231 111 19 chr9 19345794 19345902 -122925542 + MIR SINE MIR 114 231 -31 405 0 0 0 chr9 19346098 19346143 -122925301 + (TG)n Simple_repeat Simple_repeat 2 46 0 1867 9 0 0 chr9 19347486 19347705 -122923739 + L1P1 LINE L1 5469 5687 -468 2183 108 0 3 chr9 19347735 19348032 -122923412 + AluSq SINE Alu 1 296 -17 441 260 22 39 chr9 19348059 19348240 -122923204 - MER5B DNA MER1_type 0 178 1 314 258 80 116 chr9 19349595 19349897 -122921547 - L1M2 LINE L1 -5861 988 698 184 372 54 16 chr9 19350213 19350342 -122921102 + MIR3 SINE MIR 12 145 -63 334 291 17 0 chr9 19351329 19351430 -122920014 - MER5A DNA MER1_type -36 142 50 289 273 91 33 chr9 19351532 19351653 -122919791 - MIR3 SINE MIR -68 140 13 1321 64 0 5 chr9 19351950 19352138 -122919306 - L1P LINE L1 -1394 4752 4566 301 350 169 25 chr9 19352535 19352889 -122918555 - L2 LINE L2 -103 3210 2806 328 310 39 17 chr9 19353148 19353281 -122918163 - MIR SINE MIR -65 143 16 1909 172 0 3 chr9 19354185 19354487 -122916957 - AluJb SINE Alu -11 301 1 925 117 0 0 chr9 19354801 19354938 -122916506 + MSTA LTR MaLR 1 137 -291 308 227 207 27 chr9 19355046 19355196 -122916248 + L1MCa LINE L1 1238 1414 -5012 1882 144 22 11 chr9 19355252 19355529 -122915915 + AluSx SINE Alu 1 280 -32 309 202 52 107 chr9 19355555 19355807 -122915637 + L1MCa LINE L1 1650 1887 -4720 1270 236 63 23 chr9 19355942 19356468 -122914976 + L1MCa LINE L1 2075 2621 -3986 734 190 0 14 chr9 19358010 19358152 -122913292 + MLT1A1 LTR MaLR 226 365 0 1212 264 112 38 chr9 19358152 19358192 -122913252 - L2 LINE L2 -490 2824 2788 2370 107 107 13 chr9 19358192 19358583 -122912861 + MSTA LTR MaLR 1 428 0 1212 264 112 38 chr9 19358583 19359049 -122912395 - L2 LINE L2 -526 2788 2280 1703 208 150 73 chr9 19359050 19359651 -122911793 - MLT1E1 LTR MaLR -7 647 1 1227 178 14 5 chr9 19359831 19360045 -122911399 - AluJo SINE Alu -13 299 84 522 160 0 101 chr9 19360058 19360142 -122911302 - MIR SINE MIR -117 145 75 2106 105 32 0 chr9 19360142 19360427 -122911017 + AluSg1 SINE Alu 1 294 -15 522 160 0 101 chr9 19360427 19360461 -122910983 - MIR SINE MIR -187 75 39 354 328 25 45 chr9 19360489 19360690 -122910754 - L2 LINE L2 -1154 2160 1964 294 261 142 52 chr9 19360755 19360966 -122910478 - L2 LINE L2 0 3313 3084 1623 196 40 14 chr9 19360996 19361348 -122910096 - MLT1A1 LTR MaLR -4 361 1 760 191 65 84 chr9 19361348 19361429 -122910015 - MLT1B LTR MaLR -133 257 176 318 67 0 0 chr9 19361429 19361474 -122909970 + (CA)n Simple_repeat Simple_repeat 2 46 0 275 0 0 28 chr9 19361478 19361514 -122909930 + (GA)n Simple_repeat Simple_repeat 1 35 0 760 191 65 84 chr9 19361514 19361689 -122909755 - MLT1B LTR MaLR -217 173 1 21 0 0 0 chr9 19363329 19363350 -122908094 + AT_rich Low_complexity Low_complexity 1 21 0 3777 175 51 40 chr9 19363590 19364694 -122906750 + L1MB7 LINE L1 4915 6039 -145 222 37 0 0 chr9 19364694 19364721 -122906723 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 3777 175 51 40 chr9 19364721 19364857 -122906587 + L1MB7 LINE L1 6039 6172 -12 236 200 0 0 chr9 19365476 19365531 -122905913 + HAL1 LINE L1 143 197 -2310 1013 255 69 65 chr9 19365692 19365964 -122905480 + HAL1 LINE L1 1115 1385 -1122 1253 155 32 9 chr9 19365964 19366183 -122905261 + MER58A DNA MER1_type 1 224 0 1013 255 69 65 chr9 19366183 19366478 -122904966 + HAL1 LINE L1 1385 1684 -823 3434 181 15 54 chr9 19366796 19367615 -122903829 + L1MB8 LINE L1 5383 6169 -9 4280 259 75 33 chr9 19367900 19370658 -122900786 + L1M4 LINE L1 2335 5250 -896 361 164 33 0 chr9 19370669 19370730 -122900714 + AluS SINE Alu 1 63 -238 221 336 45 9 chr9 19371125 19371235 -122900209 + MIR SINE MIR 93 206 -56 186 43 0 0 chr9 19373519 19373542 -122897902 + (T)n Simple_repeat Simple_repeat 1 23 0 3453 19 1 0 chr9 19374745 19375412 -122896032 - L1P1 LINE L1 -534 5621 4954 4029 25 2 0 chr9 19375412 19375886 -122895558 + L1PA3 LINE L1 5679 6155 0 342 268 100 7 chr9 19375922 19376092 -122895352 + MIR3 SINE MIR 1 189 -19 13982 28 15 1 chr9 19377577 19378911 -122892533 - L1PA3 LINE L1 -3 6152 4839 189 0 0 0 chr9 19378911 19378932 -122892512 + (TTCTG)n Simple_repeat Simple_repeat 4 24 0 13982 28 15 1 chr9 19378932 19380412 -122891032 - L1PA3 LINE L1 -1316 4839 3310 7954 10 0 0 chr9 19380412 19381812 -122889632 + L1PA2 LINE L1 4755 6154 -1 467 252 91 47 chr9 19382250 19382504 -122888940 - MLT1I LTR MaLR 0 409 145 226 172 31 47 chr9 19382828 19382892 -122888552 - L1MB2 LINE L1 -3 6168 6106 713 202 0 0 chr9 19383352 19383476 -122887968 - FLAM_C SINE Alu -18 125 2 1950 147 0 13 chr9 19383815 19384122 -122887322 + AluJb SINE Alu 10 312 0 541 162 15 17 chr9 19384122 19384257 -122887187 + L1MB3 LINE L1 5656 5788 -392 1804 161 27 15 chr9 19384257 19384593 -122886851 + MER2 DNA MER2_type 1 340 -5 31 44 0 0 chr9 19384593 19384638 -122886806 + AT_rich Low_complexity Low_complexity 1 45 0 267 207 73 0 chr9 19384659 19384741 -122886703 - L1MC4 LINE L1 -1339 6703 6616 324 221 0 0 chr9 19384744 19384821 -122886623 + (TATATG)n Simple_repeat Simple_repeat 2 78 0 1499 223 20 15 chr9 19384822 19385213 -122886231 + L1MB3 LINE L1 5782 6174 -9 814 247 45 35 chr9 19385514 19385826 -122885618 - L1M3 LINE L1 -433 5750 5436 225 196 0 0 chr9 19387914 19387960 -122883484 + (TATATG)n Simple_repeat Simple_repeat 2 47 0 301 220 50 40 chr9 19388760 19388860 -122882584 + MIR SINE MIR 147 247 -15 375 320 8 8 chr9 19389194 19389322 -122882122 - MIR SINE MIR -13 249 122 204 364 0 11 chr9 19389380 19389468 -122881976 - MIR SINE MIR -155 107 21 563 227 121 42 chr9 19389590 19389775 -122881669 - MIR SINE MIR -55 153 9 2464 78 0 3 chr9 19391174 19391481 -122879963 - AluSc SINE Alu -3 306 1 23 54 0 0 chr9 19394625 19394662 -122876782 + AT_rich Low_complexity Low_complexity 1 37 0 652 259 210 27 chr9 19397515 19397931 -122873513 - MLT1D LTR MaLR 0 505 1 2102 142 132 5 chr9 19397989 19398369 -122873075 - MSTA LTR MaLR 0 428 1 3426 274 193 40 chr9 19398678 19400532 -122870912 + L2 LINE L2 810 2945 -369 418 198 123 19 chr9 19400925 19401031 -122870413 + MIR3 SINE MIR 81 197 -11 425 354 113 46 chr9 19404142 19405113 -122866331 - L2 LINE L2 0 3272 2243 346 80 0 0 chr9 19405130 19405180 -122866264 - L1PA3 LINE L1 -3 6152 6103 228 67 0 0 chr9 19405180 19405210 -122866234 + (A)n Simple_repeat Simple_repeat 1 30 0 1204 186 6 13 chr9 19406184 19406517 -122864927 - MLT1A1 LTR MaLR 0 365 2 1091 150 45 37 chr9 19406526 19406792 -122864652 + L1MB4 LINE L1 5899 6156 -10 1645 166 9 77 chr9 19407383 19407709 -122863735 - AluJo SINE Alu -8 304 1 2449 142 59 10 chr9 19408195 19408603 -122862841 - MSTA LTR MaLR 0 428 1 8952 25 0 0 chr9 19408616 19410447 -122860997 + L1PA3 LINE L1 4325 6155 0 510 17 0 0 chr9 19410520 19410579 -122860865 + (TG)n Simple_repeat Simple_repeat 2 60 0 779 197 7 20 chr9 19410614 19410766 -122860678 - AluJo SINE Alu -162 150 1 1125 213 90 54 chr9 19410766 19411357 -122860087 + MER114 LTR ERV 37 648 0 194 192 0 14 chr9 19411594 19411667 -122859777 + (TA)n Simple_repeat Simple_repeat 1 72 0 375 23 0 0 chr9 19411772 19411816 -122859628 + (CA)n Simple_repeat Simple_repeat 2 45 0 242 330 55 0 chr9 19413369 19413460 -122857984 - MIR SINE MIR -91 171 76 1816 140 47 4 chr9 19414397 19414676 -122856768 - AluSx SINE Alu -21 291 1 21 0 0 0 chr9 19414821 19414842 -122856602 + AT_rich Low_complexity Low_complexity 1 21 0 46 0 0 0 chr9 19414975 19415021 -122856423 + AT_rich Low_complexity Low_complexity 1 46 0 236 207 16 17 chr9 19415102 19415179 -122856265 - L1ME LINE L1 -297 5824 5745 397 236 0 47 chr9 19415186 19415292 -122856152 - LTR33 LTR ERVL 0 521 421 428 282 82 24 chr9 19415579 19415749 -122855695 - LTR33 LTR ERVL -327 194 15 312 313 106 43 chr9 19415761 19415969 -122855475 - L1ME LINE L1 -380 5741 5521 259 224 41 41 chr9 19415992 19416090 -122855354 - L1ME LINE L1 -2337 5471 5374 432 193 79 14 chr9 19416150 19416290 -122855154 - L1ME LINE L1 -824 5322 5174 1480 197 59 3 chr9 19416328 19416617 -122854827 - AluJo SINE Alu -7 305 1 902 150 0 0 chr9 19416636 19416769 -122854675 - FLAM_C SINE Alu 0 133 1 323 102 0 0 chr9 19417113 19417162 -122854282 - AluJb SINE Alu -7 294 246 1035 124 0 62 chr9 19417164 19417342 -122854102 - AluJb SINE Alu -145 167 1 264 122 0 0 chr9 19417419 19417460 -122853984 + (TCC)n Simple_repeat Simple_repeat 3 43 0 438 276 53 0 chr9 19417942 19418094 -122853350 + L1MD2 LINE L1 5612 5771 -2037 646 175 70 70 chr9 19418247 19418447 -122852997 - MLT1H1 LTR MaLR 0 590 356 770 250 39 125 chr9 19418507 19418909 -122852535 - MLT1H1 LTR MaLR -214 376 7 1293 214 18 0 chr9 19419956 19420231 -122851213 + Tigger7 DNA MER2_type 2 281 -2206 890 176 33 0 chr9 19420227 19420409 -122851035 + Tigger7 DNA MER2_type 2300 2487 0 * 456 203 102 17 chr9 19421156 19421274 -122850170 - MLT1H1 LTR MaLR -421 134 7 1251 252 106 7 chr9 19422100 19422525 -122848919 + MLT1C LTR MaLR 1 467 0 2164 133 10 0 chr9 19423947 19424256 -122847188 - AluSx SINE Alu 0 312 1 1095 291 74 25 chr9 19424461 19424946 -122846498 - MLT1J LTR MaLR 0 511 3 213 361 62 8 chr9 19425056 19425186 -122846258 - L2 LINE L2 -2 3270 3134 214 273 0 0 chr9 19425322 19425366 -122846078 + L2 LINE L2 3209 3252 -20 336 278 118 14 chr9 19425609 19425753 -122845691 + MIR SINE MIR 28 186 -76 2220 106 0 7 chr9 19425759 19426051 -122845393 - AluSp SINE Alu -23 290 1 315 290 89 8 chr9 19427676 19427800 -122843644 - L1MC4 LINE L1 -1 8041 7908 21 0 0 0 chr9 19428476 19428497 -122842947 + AT_rich Low_complexity Low_complexity 1 21 0 1736 196 68 26 chr9 19428865 19429294 -122842150 + L1MD2 LINE L1 5906 6352 -7 773 166 0 102 chr9 19429360 19429570 -122841874 - AluSg/x SINE Alu 0 305 115 334 278 113 36 chr9 19430801 19430995 -122840449 - L1ME3A LINE L1 0 6170 5962 611 241 48 63 chr9 19431204 19431519 -122839925 - L1MC5 LINE L1 -758 7203 6894 270 301 48 36 chr9 19431527 19431693 -122839751 - L1MC4 LINE L1 -1197 6845 6678 363 297 120 29 chr9 19431946 19432121 -122839323 - MIR SINE MIR 0 262 72 21 0 0 0 chr9 19432952 19432973 -122838471 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 19435405 19435427 -122836017 + AT_rich Low_complexity Low_complexity 1 22 0 256 346 37 9 chr9 19436226 19436333 -122835111 + L2 LINE L2 2943 3052 -220 22 35 0 0 chr9 19437313 19437342 -122834102 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr9 19437561 19437591 -122833853 + AT_rich Low_complexity Low_complexity 1 30 0 990 114 43 22 chr9 19437592 19437776 -122833668 - L1MA9 LINE L1 0 7272 7085 8813 35 0 26 chr9 19437799 19439695 -122831749 - L1PA4 LINE L1 -3 6152 4287 3051 35 0 0 chr9 19439695 19440062 -122831382 + L1PA4 LINE L1 3926 4292 -1854 * 8922 174 31 52 chr9 19440058 19440927 -122830517 - L1MA9 LINE L1 -173 7099 6213 1630 198 70 6 chr9 19440927 19441270 -122830174 - MLT1A1 LTR MaLR 0 365 1 8922 174 31 52 chr9 19441270 19443373 -122828071 - L1MA9 LINE L1 -1059 6213 4194 281 266 0 0 chr9 19443370 19443434 -122828010 - L1MA9 LINE L1 -3409 3697 3634 * 2502 258 81 38 chr9 19443436 19445974 -122825470 - L1MA9 LINE L1 -3445 3661 5 267 237 105 42 chr9 19445983 19446173 -122825271 - L1MEd LINE L1 -5023 1096 895 1409 215 21 48 chr9 19446193 19446389 -122825055 + MLT1A1 LTR MaLR 4 187 -178 1654 170 77 70 chr9 19446389 19446818 -122824626 - MSTB1 LTR MaLR 0 432 1 1409 215 21 48 chr9 19446818 19446993 -122824451 + MLT1A1 LTR MaLR 187 365 0 390 335 52 18 chr9 19447074 19447346 -122824098 - L1MEd LINE L1 -5312 807 527 2152 113 3 0 chr9 19447995 19448287 -122823157 + AluSg SINE Alu 1 293 -17 351 263 123 9 chr9 19448560 19448674 -122822770 - MER5B DNA MER1_type 0 178 52 2418 81 0 3 chr9 19448723 19449032 -122822412 - AluSc SINE Alu -1 308 1 286 216 0 0 chr9 19449042 19449093 -122822351 + MER5B DNA MER1_type 127 177 -1 228 237 229 8 chr9 19449861 19449979 -122821465 - L1ME4a LINE L1 -2 6119 5976 294 235 145 42 chr9 19450190 19450356 -122821088 - L1ME4a LINE L1 -379 5742 5560 183 367 122 15 chr9 19450510 19450706 -122820738 + MIR SINE MIR 46 262 0 301 301 12 0 chr9 19451357 19451440 -122820004 - MIR3 SINE MIR -17 191 108 200 328 0 16 chr9 19451511 19451575 -122819869 - MIR SINE MIR -57 151 89 24 0 0 0 chr9 19454177 19454201 -122817243 + AT_rich Low_complexity Low_complexity 1 24 0 180 111 0 0 chr9 19454211 19454238 -122817206 + (T)n Simple_repeat Simple_repeat 1 27 0 384 200 215 68 chr9 19454522 19454727 -122816717 - MER106A DNA MER1_type -1 235 1 595 283 154 47 chr9 19454774 19455460 -122815984 - L1ME4a LINE L1 -2 6119 5360 25 0 0 0 chr9 19458064 19458089 -122813355 + AT_rich Low_complexity Low_complexity 1 25 0 325 205 9 77 chr9 19458182 19458398 -122813046 + AluJo SINE Alu 25 289 -13 188 188 424 24 chr9 19458423 19458508 -122812936 - MIR SINE MIR -97 165 47 279 0 0 0 chr9 19459754 19459785 -122811659 + (TG)n Simple_repeat Simple_repeat 2 32 0 693 313 57 8 chr9 19461457 19461703 -122809741 + MIR SINE MIR 5 262 0 23 33 0 0 chr9 19461822 19461852 -122809592 + AT_rich Low_complexity Low_complexity 1 30 0 6070 10 0 0 chr9 19465269 19465954 -122805490 - L1PA2 LINE L1 -2 6153 5469 251 352 34 50 chr9 19466593 19466772 -122804672 - MLT1K LTR MaLR -411 177 2 343 300 63 89 chr9 19467071 19467418 -122804026 - L2 LINE L2 -87 3185 2848 515 269 152 5 chr9 19467973 19468170 -122803274 + MIR SINE MIR 37 262 0 327 247 14 0 chr9 19468295 19468368 -122803076 + MIR SINE MIR 141 214 -48 * 477 325 76 21 chr9 19468360 19468597 -122802847 - MIR SINE MIR -11 251 2 225 234 0 21 chr9 19468705 19468752 -122802692 + MIR SINE MIR 47 92 -170 453 348 49 46 chr9 19470581 19470926 -122800518 - L2 LINE L2 0 3272 2927 307 270 197 24 chr9 19471018 19471226 -122800218 - MIR SINE MIR -14 248 3 1542 207 115 0 chr9 19471713 19472104 -122799340 + MER63B DNA MER1_type 1 436 0 203 304 51 13 chr9 19472134 19472213 -122799231 + L2 LINE L2 3191 3272 0 377 195 0 102 chr9 19472265 19472393 -122799051 + MIR3 SINE MIR 88 202 -6 189 345 0 0 chr9 19473213 19473268 -122798176 + MIR3 SINE MIR 118 172 -36 455 315 82 18 chr9 19474176 19474455 -122796989 - MLT1I LTR MaLR -39 370 74 210 140 20 40 chr9 19474867 19474917 -122796527 + CT-rich Low_complexity Low_complexity 3 51 0 277 259 0 94 chr9 19475095 19475180 -122796264 + L2 LINE L2 3185 3261 -11 26 30 0 0 chr9 19476578 19476611 -122794833 + AT_rich Low_complexity Low_complexity 1 33 0 380 279 97 32 chr9 19477336 19477490 -122793954 - MIR3 SINE MIR -18 190 27 293 297 149 15 chr9 19480688 19480883 -122790561 - MIR SINE MIR -6 256 36 371 332 58 10 chr9 19481171 19481376 -122790068 - MIR SINE MIR -14 248 34 541 279 73 0 chr9 19481394 19481559 -122789885 - MER5B DNA MER1_type 0 178 2 397 291 89 11 chr9 19482627 19482806 -122788638 - MER117 DNA MER1_type -3 194 2 681 292 15 0 chr9 19483654 19483856 -122787588 + MER58C DNA MER1_type 11 215 0 217 294 130 0 chr9 19483894 19483986 -122787458 - MIR SINE MIR 0 262 159 875 263 95 99 chr9 19483986 19484522 -122786922 + MLT1F LTR MaLR 1 534 -8 882 254 57 35 chr9 19484527 19485006 -122786438 + MLT1F-int LTR MaLR 1 601 -770 318 292 193 16 chr9 19485218 19485410 -122786034 + MLT1F-int LTR MaLR 659 884 -487 249 294 7 96 chr9 19485513 19485659 -122785785 + MLT1F-int LTR MaLR 963 1095 -276 597 226 244 78 chr9 19485922 19486192 -122785252 + MLT1F1 LTR MaLR 72 386 -181 875 162 73 17 chr9 19486204 19486383 -122785061 - THE1C LTR MaLR -186 189 1 553 270 62 6 chr9 19486649 19486827 -122784617 + MER5A DNA MER1_type 1 188 -1 214 286 36 36 chr9 19487854 19487938 -122783506 + MIR SINE MIR 20 103 -105 188 184 0 0 chr9 19488467 19488505 -122782939 - L2 LINE L2 -4 3309 3272 189 147 0 0 chr9 19488633 19488667 -122782777 + (TCTCCC)n Simple_repeat Simple_repeat 6 39 0 1048 150 23 6 chr9 19488857 19489030 -122782414 - MER5A DNA MER1_type -8 181 6 12751 212 47 8 chr9 19489924 19494210 -122777234 - L1PA16 LINE L1 -3 6865 2415 6090 32 8 0 chr9 19494205 19494948 -122776496 - L1PA4 LINE L1 -1269 4877 4129 * 7565 25 1 8 chr9 19494949 19496232 -122775212 + L1PA4 LINE L1 4879 6155 0 2526 237 28 43 chr9 19496233 19497112 -122774332 - L1PA16 LINE L1 -4425 2423 1474 351 359 77 41 chr9 19497968 19498138 -122773306 - L1M2 LINE L1 -5902 947 772 1004 365 27 26 chr9 19498138 19498724 -122772720 - L1PA16 LINE L1 -6200 638 52 26 30 0 0 chr9 19498737 19498770 -122772674 + AT_rich Low_complexity Low_complexity 1 33 0 615 199 48 7 chr9 19498912 19499058 -122772386 + L1MA7 LINE L1 6140 6291 0 27 29 0 0 chr9 19500742 19500776 -122770668 + AT_rich Low_complexity Low_complexity 1 34 0 818 287 32 59 chr9 19501143 19501516 -122769928 + L2 LINE L2 2946 3308 -5 442 331 71 52 chr9 19501527 19501835 -122769609 - L2 LINE L2 -4 3268 2955 21 0 0 0 chr9 19505456 19505477 -122765967 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr9 19506607 19506636 -122764808 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr9 19507614 19507635 -122763809 + AT_rich Low_complexity Low_complexity 1 21 0 385 295 71 64 chr9 19508027 19508264 -122763180 - MIR SINE MIR -13 249 10 288 363 53 18 chr9 19508764 19508935 -122762509 + MER5B DNA MER1_type 1 177 -1 378 137 82 0 chr9 19509141 19509214 -122762230 - MADE1 DNA Mariner 0 80 2 235 167 21 21 chr9 19509727 19509775 -122761669 - L2 LINE L2 -11 3302 3255 220 367 0 44 chr9 19510427 19510517 -122760927 - MIR SINE MIR -106 102 17 328 329 12 31 chr9 19510663 19510824 -122760620 + MIR3 SINE MIR 15 172 -36 1013 241 151 28 chr9 19511958 19512277 -122759167 - MLT1J LTR MaLR -153 358 1 277 343 76 21 chr9 19512354 19512547 -122758897 - MIR SINE MIR -27 235 33 455 234 203 66 chr9 19512798 19512934 -122758510 - LTR50 LTR ERVL -11 784 668 1130 200 24 5 chr9 19512934 19513144 -122758300 + MER20 DNA MER1_type 2 215 -4 455 234 203 66 chr9 19513144 19513310 -122758134 - LTR50 LTR ERVL -127 668 359 328 312 181 0 chr9 19513480 19513717 -122757727 - L2 LINE L2 -934 2380 2101 961 112 26 164 chr9 19514051 19514319 -122757125 + L1MC3 LINE L1 7548 7778 -7 1705 179 84 48 chr9 19514495 19514937 -122756507 - MLT1C LTR MaLR -9 458 1 663 269 132 64 chr9 19514960 19515281 -122756163 + MLT1L LTR MaLR 162 520 -95 2418 85 0 0 chr9 19515281 19515587 -122755857 - AluY SINE Alu -5 306 1 663 269 132 64 chr9 19515587 19515689 -122755755 + MLT1L LTR MaLR 520 614 -1 2337 79 0 0 chr9 19516684 19516975 -122754469 + AluY SINE Alu 1 291 -20 23 33 0 0 chr9 19517202 19517232 -122754212 + AT_rich Low_complexity Low_complexity 1 30 0 581 310 60 25 chr9 19517866 19518150 -122753294 - L2 LINE L2 -93 3220 2927 253 309 112 13 chr9 19518178 19518330 -122753114 + MIR SINE MIR 32 198 -64 230 288 0 50 chr9 19519361 19519441 -122752003 - L2 LINE L2 0 3313 3238 258 281 0 0 chr9 19519797 19519861 -122751583 + (TATATG)n Simple_repeat Simple_repeat 3 66 0 459 309 25 35 chr9 19520179 19520380 -122751064 - MIR SINE MIR -7 255 57 633 280 86 75 chr9 19523281 19523718 -122747726 + L2 LINE L2 2784 3222 -50 198 231 0 0 chr9 19523760 19523825 -122747619 + (TGAA)n Simple_repeat Simple_repeat 2 66 0 201 315 0 33 chr9 19527060 19527152 -122744292 + MIR SINE MIR 117 205 -57 21 0 0 0 chr9 19528075 19528096 -122743348 + AT_rich Low_complexity Low_complexity 1 21 0 1310 200 0 68 chr9 19528709 19529004 -122742440 + AluJo SINE Alu 2 276 -36 24 32 0 0 chr9 19530429 19530460 -122740984 + AT_rich Low_complexity Low_complexity 1 31 0 306 0 0 0 chr9 19530616 19530650 -122740794 + (T)n Simple_repeat Simple_repeat 1 34 0 1159 269 76 7 chr9 19531051 19531360 -122740084 + MER113 DNA MER1_type? 7 358 -163 2491 70 0 16 chr9 19531360 19531676 -122739768 + AluSx SINE Alu 1 311 -1 1159 269 76 7 chr9 19531676 19531812 -122739632 + MER113 DNA MER1_type? 358 483 -38 3461 36 10 0 chr9 19532391 19532808 -122738636 + L1PA3 LINE L1 5735 6155 0 623 314 87 13 chr9 19532809 19533038 -122738406 + MIR SINE MIR 9 254 -8 803 309 74 13 chr9 19533376 19533754 -122737690 + L3b LINE CR1 1115 1515 -68 1182 218 67 27 chr9 19533882 19534213 -122737231 - MER2 DNA MER2_type 0 344 1 645 327 80 40 chr9 19534367 19534694 -122736750 - L2 LINE L2 -1 3271 2932 877 173 109 12 chr9 19534776 19535024 -122736420 + MER33 DNA MER1_type 31 302 -22 626 255 90 19 chr9 19535026 19535063 -122736381 + MER112 DNA MER1_type 29 62 -198 207 100 0 0 chr9 19535063 19535093 -122736351 + (CATA)n Simple_repeat Simple_repeat 3 32 0 626 255 90 19 chr9 19535093 19535267 -122736177 + MER112 DNA MER1_type 62 255 -5 261 299 267 58 chr9 19535337 19535952 -122735492 - L2 LINE L2 -589 2725 1983 2126 137 0 6 chr9 19540131 19540542 -122730902 - AluSq SINE Alu 0 409 1 183 250 26 9 chr9 19540660 19540776 -122730668 + CT-rich Low_complexity Low_complexity 3 120 0 297 336 143 41 chr9 19541943 19542357 -122729087 - L2 LINE L2 0 3313 2858 1579 306 146 41 chr9 19542459 19543827 -122727617 - L2 LINE L2 -600 2714 1204 2172 73 3 18 chr9 19545052 19545397 -122726047 + AluY SINE Alu 1 341 0 736 307 137 30 chr9 19545475 19546036 -122725408 - L2 LINE L2 -2235 1079 459 218 299 10 62 chr9 19546145 19546242 -122725202 + MIR SINE MIR 19 110 -98 239 264 114 54 chr9 19546322 19546473 -122724971 - MIR SINE MIR -62 146 2 25 31 0 0 chr9 19547392 19547424 -122724020 + AT_rich Low_complexity Low_complexity 1 32 0 1281 145 5 10 chr9 19547989 19548182 -122723262 - AluSq SINE Alu -39 274 83 2464 99 0 0 chr9 19549893 19550205 -122721239 + AluSx SINE Alu 1 312 0 351 154 0 0 chr9 19550306 19550371 -122721073 + CT-rich Low_complexity Low_complexity 1 65 0 1052 312 111 5 chr9 19550395 19550877 -122720567 - L2 LINE L2 -39 3274 2742 843 259 49 0 chr9 19550895 19551100 -122720344 + MIR SINE MIR 39 253 -9 336 234 0 24 chr9 19551106 19551230 -122720214 + (TA)n Simple_repeat Simple_repeat 2 122 0 399 220 0 58 chr9 19551245 19551436 -122720008 + (TA)n Simple_repeat Simple_repeat 1 180 0 1044 283 111 8 chr9 19551476 19551836 -122719608 - L2 LINE L2 -611 2703 2307 22 0 0 0 chr9 19553139 19553161 -122718283 + AT_rich Low_complexity Low_complexity 1 22 0 2880 194 25 8 chr9 19553629 19554725 -122716719 + L1MB1 LINE L1 4709 5827 -341 675 144 0 0 chr9 19554725 19554836 -122716608 + AluSp/q SINE Alu 201 311 -2 380 42 0 0 chr9 19554837 19554885 -122716559 - L1P LINE L1 -2464 3682 3635 3071 65 18 0 chr9 19554885 19555276 -122716168 + L1PA7 LINE L1 5748 6153 -1 1409 153 67 0 chr9 19555278 19555560 -122715884 + L1MB1 LINE L1 5847 6147 -21 3443 151 54 11 chr9 19555730 19556430 -122715014 + L1MB3 LINE L1 5451 6180 -3 351 65 0 0 chr9 19556706 19556752 -122714692 + (TG)n Simple_repeat Simple_repeat 2 47 0 384 335 35 29 chr9 19557196 19557366 -122714078 + MIR SINE MIR 1 171 -91 500 333 58 61 chr9 19557758 19558052 -122713392 - L2 LINE L2 -6 3266 2974 261 180 60 0 chr9 19559869 19559919 -122711525 - MIR SINE MIR -113 149 97 1584 120 0 30 chr9 19560287 19560521 -122710923 - AluSc SINE Alu -82 227 1 391 240 29 10 chr9 19560709 19560813 -122710631 + MER5A DNA MER1_type 4 109 -80 2315 105 0 3 chr9 19561068 19561372 -122710072 - AluSx SINE Alu -2 310 8 747 250 22 0 chr9 19561400 19561580 -122709864 - L1MC5 LINE L1 -1144 6817 6634 484 194 46 19 chr9 19562041 19562149 -122709295 + MER3 DNA MER1_type 1 111 -98 657 227 70 38 chr9 19562298 19562592 -122708852 - L1ME2 LINE L1 -11 6153 5840 * 1897 239 81 59 chr9 19562589 19563489 -122707955 - L1ME2 LINE L1 -10 6223 5306 1345 247 89 6 chr9 19563514 19564377 -122707067 - L1ME2 LINE L1 -1024 5191 4197 399 358 44 21 chr9 19564387 19564725 -122706719 - L1ME2 LINE L1 -6015 381 36 545 424 67 54 chr9 19564784 19564981 -122706463 - HAL1b LINE L1 -796 552 359 252 0 0 0 chr9 19564981 19565009 -122706435 + (TA)n Simple_repeat Simple_repeat 2 29 0 545 424 67 54 chr9 19565009 19565292 -122706152 - HAL1b LINE L1 -989 359 66 2167 83 42 0 chr9 19565303 19565591 -122705853 - AluY SINE Alu -11 300 1 943 146 0 0 chr9 19565953 19566090 -122705354 - AluJb SINE Alu -19 293 157 2134 125 0 10 chr9 19566881 19567193 -122704251 + AluSg SINE Alu 1 309 -1 208 214 0 0 chr9 19569433 19569475 -122701969 - MIR3 SINE MIR -15 193 152 259 278 11 0 chr9 19569601 19569691 -122701753 - MER103 DNA DNA -70 96 6 223 320 152 8 chr9 19569771 19569896 -122701548 - MIR3 SINE MIR -50 158 16 1368 149 0 0 chr9 19570188 19570403 -122701041 + L1PB4 LINE L1 5928 6142 -14 559 303 49 0 chr9 19570729 19570914 -122700530 + MIR3 SINE MIR 15 208 0 1893 169 3 0 chr9 19573862 19574164 -122697280 - AluJb SINE Alu -9 303 1 180 306 28 56 chr9 19577747 19577819 -122693625 - L2 LINE L2 0 3272 3203 464 333 89 22 chr9 19577960 19578275 -122693169 + LTR16C LTR ERVL 156 491 0 384 301 87 40 chr9 19578362 19578535 -122692909 + L2 LINE L2 3125 3305 -8 201 326 47 47 chr9 19578596 19578682 -122692762 - MIR SINE MIR -104 104 19 215 226 16 16 chr9 19579358 19579420 -122692024 - MIR SINE MIR -10 252 191 581 188 56 69 chr9 19579478 19579622 -122691822 - MIR SINE MIR -64 198 57 242 347 158 16 chr9 19579699 19579889 -122691555 - L2 LINE L2 -1235 2079 1863 560 246 0 168 chr9 19581233 19581530 -122689914 - MIR SINE MIR -7 255 9 972 56 0 0 chr9 19582383 19582509 -122688935 - L1PA4 LINE L1 -3 6152 6027 1836 265 110 14 chr9 19582511 19583466 -122687978 + L2 LINE L2 2274 3312 -1 613 255 176 5 chr9 19584634 19584822 -122686622 + MIR SINE MIR 1 220 -42 2017 103 3 36 chr9 19584948 19585249 -122686195 - AluSx SINE Alu -4 308 18 1658 224 88 31 chr9 19585633 19586146 -122685298 - MLT1F LTR MaLR 0 542 1 247 262 48 48 chr9 19587165 19587352 -122684092 - L1ME4a LINE L1 -1 6120 5934 369 216 80 24 chr9 19587508 19587633 -122683811 - L1MB7 LINE L1 -100 6084 5953 386 138 0 0 chr9 19587634 19587699 -122683745 + L1MB7 LINE L1 5884 5948 -226 644 203 73 0 chr9 19587795 19587972 -122683472 + L1M4 LINE L1 5599 5788 -396 1442 183 0 4 chr9 19588472 19588702 -122682742 - AluJb SINE Alu -83 229 1 1069 204 44 11 chr9 19589247 19589517 -122681927 - L1MB7 LINE L1 0 6184 5906 1442 176 68 23 chr9 19589521 19589740 -122681704 - L1MB7 LINE L1 -582 5592 5384 2230 109 0 3 chr9 19589740 19590042 -122681402 - AluSc SINE Alu -7 302 2 1442 176 68 23 chr9 19590042 19590261 -122681183 - L1MB7 LINE L1 -790 5384 5138 2264 130 8 24 chr9 19590723 19591093 -122680351 - THE1B LTR MaLR 0 364 1 1379 187 16 13 chr9 19591093 19591403 -122680041 - L1MB7 LINE L1 -998 5148 4838 272 350 10 10 chr9 19591538 19591638 -122679806 + MIR SINE MIR 8 107 -155 240 250 56 0 chr9 19591743 19591815 -122679629 + MIR SINE MIR 114 189 -73 305 258 75 0 chr9 19591855 19591948 -122679496 - L1ME3A LINE L1 -17 6153 6054 412 18 35 0 chr9 19593141 19593198 -122678246 + (CA)n Simple_repeat Simple_repeat 2 60 0 1241 160 213 4 chr9 19594037 19594281 -122677163 - AluJb SINE Alu -17 295 1 335 369 35 0 chr9 19594978 19595119 -122676325 - MIR3 SINE MIR -23 185 40 224 244 0 0 chr9 19595386 19595431 -122676013 + L3 LINE CR1 1526 1570 -7 195 250 204 68 chr9 19597435 19597567 -122673877 + MIR3 SINE MIR 16 165 -43 607 136 27 0 chr9 19598011 19598121 -122673323 - L1MB4 LINE L1 -66 6114 6002 189 263 88 0 chr9 19599051 19599131 -122672313 - MIR SINE MIR 0 262 176 203 324 0 81 chr9 19599174 19599285 -122672159 - MER5B DNA MER1_type -1 177 76 703 182 25 0 chr9 19601185 19601306 -122670138 + FLAM_A SINE Alu 1 124 -9 263 266 9 35 chr9 19601321 19601434 -122670010 + (TA)n Simple_repeat Simple_repeat 1 110 0 503 312 65 39 chr9 19601517 19601759 -122669685 - MIR SINE MIR -11 251 9 489 283 22 60 chr9 19601825 19602009 -122669435 - MER5B DNA MER1_type -1 177 1 250 343 63 74 chr9 19602088 19602828 -122668616 - L2 LINE L2 -55 3217 2415 494 239 30 60 chr9 19603722 19603889 -122667555 + MIR SINE MIR 50 211 -51 374 333 85 12 chr9 19604628 19604793 -122666651 + MIR3 SINE MIR 31 207 -1 256 348 169 20 chr9 19605718 19605919 -122665525 - L2 LINE L2 0 3272 3042 2721 161 51 13 chr9 19605944 19606477 -122664967 - MER68 LTR ERV1 -9 553 1 283 227 125 11 chr9 19606755 19606843 -122664601 - L2 LINE L2 -20 3252 3155 254 341 77 35 chr9 19607509 19607718 -122663726 + MIR SINE MIR 40 261 -1 279 295 115 0 chr9 19608245 19608367 -122663077 - MIR SINE MIR -125 137 2 1959 118 14 0 chr9 19609862 19610176 -122661268 - AluSq SINE Alu 0 318 1 3397 188 75 30 chr9 19611193 19612318 -122659126 + L1MC3 LINE L1 4911 5306 -840 226 354 157 11 chr9 19612774 19612952 -122658492 + MIR SINE MIR 47 250 -12 396 281 44 37 chr9 19613618 19613753 -122657691 + L2 LINE L2 3178 3313 0 26 30 0 0 chr9 19614244 19614277 -122657167 + AT_rich Low_complexity Low_complexity 1 33 0 188 326 129 8 chr9 19614757 19614889 -122656555 - L2 LINE L2 -4 3268 3121 275 347 21 26 chr9 19614922 19615112 -122656332 - L2 LINE L2 -344 2970 2782 390 216 23 0 chr9 19615176 19615264 -122656180 + MER5A DNA MER1_type 17 106 -83 944 347 111 34 chr9 19615357 19616631 -122654813 - L2 LINE L2 -587 2727 1356 242 284 32 29 chr9 19617039 19617203 -122654241 - L3 LINE CR1 -7 1570 1358 466 314 46 31 chr9 19617681 19617875 -122653569 - MIR SINE MIR -34 228 32 231 304 194 36 chr9 19618085 19618477 -122652967 - L2 LINE L2 -1071 2243 1790 527 327 98 31 chr9 19618504 19618831 -122652613 - L3 LINE CR1 -316 1261 913 394 321 164 13 chr9 19618906 19619065 -122652379 + MIR3 SINE MIR 15 197 -11 320 298 40 32 chr9 19619092 19619216 -122652228 - L2 LINE L2 -1 3271 3147 692 245 130 12 chr9 19619878 19620131 -122651313 - MLT1H1 LTR MaLR 0 555 273 1288 127 75 0 chr9 19621126 19621338 -122650106 - MER30 DNA MER1_type -1 229 2 938 262 76 60 chr9 19621518 19621964 -122649480 - LTR16B LTR ERVL -6 458 6 270 95 0 0 chr9 19622291 19622333 -122649111 + (CA)n Simple_repeat Simple_repeat 1 42 0 1548 195 6 29 chr9 19626320 19626338 -122645106 - AluJo SINE Alu -6 306 289 234 0 0 0 chr9 19626338 19626364 -122645080 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 1548 195 6 29 chr9 19626364 19626658 -122644786 - AluJo SINE Alu -23 289 1 195 253 12 48 chr9 19627453 19627536 -122643908 + L3b LINE CR1 1311 1390 -193 916 166 86 140 chr9 19627640 19628104 -122643340 - MLT1E3 LTR MaLR 0 624 67 464 279 107 0 chr9 19628562 19628702 -122642742 - MIR SINE MIR 0 262 108 406 291 119 0 chr9 19628825 19628959 -122642485 + MIR SINE MIR 32 181 -81 7699 34 2 0 chr9 19633789 19635495 -122635949 - L1PA4 LINE L1 0 6155 4454 227 250 193 0 chr9 19635971 19636059 -122635385 - MIR SINE MIR -20 242 138 355 248 43 8 chr9 19636614 19636731 -122634713 + L1MC4a LINE L1 4459 4579 -1567 326 279 149 0 chr9 19636732 19636886 -122634558 + L1MC4a LINE L1 4668 4844 -1302 273 263 54 73 chr9 19637030 19637235 -122634209 + L1MC4a LINE L1 5083 5283 -863 * 3244 69 5 0 chr9 19637233 19637665 -122633779 - L1P LINE L1 -876 5270 4837 2152 68 10 0 chr9 19637665 19637957 -122633487 + L1PA7 LINE L1 5858 6154 0 871 288 77 17 chr9 19637974 19638490 -122632954 + L1MC4a LINE L1 5295 5808 -354 317 312 29 65 chr9 19640805 19640943 -122630501 + MIR3 SINE MIR 64 196 -12 234 0 0 0 chr9 19641676 19641702 -122629742 + (A)n Simple_repeat Simple_repeat 1 26 0 2321 115 0 0 chr9 19641859 19642171 -122629273 - AluSx SINE Alu 0 312 1 236 260 177 10 chr9 19642303 19642399 -122629045 + MIR SINE MIR 20 131 -131 2167 124 38 27 chr9 19643417 19643788 -122627656 - THE1C LTR MaLR 0 375 1 564 330 28 14 chr9 19646025 19646243 -122625201 - MIR SINE MIR -37 225 5 21 57 0 0 chr9 19647174 19647209 -122624235 + AT_rich Low_complexity Low_complexity 1 35 0 768 182 0 15 chr9 19647659 19647791 -122623653 - FLAM_C SINE Alu -3 130 1 24 53 0 0 chr9 19648553 19648591 -122622853 + AT_rich Low_complexity Low_complexity 1 38 0 7840 17 0 0 chr9 19648669 19650167 -122621277 - L1PA3 LINE L1 0 6155 4658 5012 25 0 0 chr9 19650169 19650757 -122620687 + L1PA3 LINE L1 4060 4647 -1499 728 275 94 43 chr9 19650820 19651277 -122620167 - L2 LINE L2 -76 3237 2776 348 239 179 16 chr9 19652410 19652594 -122618850 + MIR SINE MIR 20 233 -29 374 240 96 0 chr9 19652814 19652918 -122618526 - MIR SINE MIR 0 262 149 220 274 0 16 chr9 19654408 19654470 -122616974 + GA-rich Low_complexity Low_complexity 1 61 0 23 0 0 0 chr9 19658362 19658385 -122613059 + AT_rich Low_complexity Low_complexity 1 23 0 319 279 127 19 chr9 19658960 19659118 -122612326 + MIR SINE MIR 75 249 -13 217 222 0 0 chr9 19660163 19660208 -122611236 + CT-rich Low_complexity Low_complexity 4 48 0 330 67 0 0 chr9 19661061 19661106 -122610338 + (TG)n Simple_repeat Simple_repeat 2 46 0 1075 224 56 32 chr9 19662378 19662864 -122608580 - MLT1E LTR MaLR 0 593 1 317 221 0 0 chr9 19662896 19662964 -122608480 + Tigger4(Zombi) DNA MER2_type 2664 2731 0 2057 188 34 1 chr9 19664223 19664849 -122606595 - L1MC/D LINE L1 -744 5402 4849 252 297 58 58 chr9 19664916 19665054 -122606390 + MIR SINE MIR 29 166 -96 462 344 8 0 chr9 19665071 19665202 -122606242 + MIR SINE MIR 1 132 -130 339 158 118 13 chr9 19665559 19665635 -122605809 - L1MB7 LINE L1 -40 6144 6061 8087 34 0 0 chr9 19665639 19667383 -122604061 - L1PA3 LINE L1 -2 6153 4411 2757 20 0 0 chr9 19667383 19667687 -122603757 - AluYa5 SINE Alu -7 304 1 17469 45 58 3 chr9 19667687 19669926 -122601518 - L1PA3 LINE L1 -3783 2363 1 808 264 146 65 chr9 19670056 19670529 -122600915 + MLT1J LTR MaLR 1 511 0 207 307 79 70 chr9 19671176 19671290 -122600154 + L2 LINE L2 3154 3268 -4 180 311 236 14 chr9 19671337 19671485 -122599959 + MIR SINE MIR 81 261 -1 354 276 14 14 chr9 19671496 19671641 -122599803 + (TTA)n Simple_repeat Simple_repeat 1 145 0 207 0 0 0 chr9 19671905 19671928 -122599516 + (T)n Simple_repeat Simple_repeat 1 23 0 261 0 0 0 chr9 19672050 19672079 -122599365 + (A)n Simple_repeat Simple_repeat 1 29 0 2241 121 0 3 chr9 19672875 19673182 -122598262 + AluSq SINE Alu 1 306 -7 180 273 0 0 chr9 19673199 19673265 -122598179 + GA-rich Low_complexity Low_complexity 1 66 0 363 262 43 27 chr9 19673286 19673456 -122597988 - MIR SINE MIR -3 259 38 454 302 98 51 chr9 19673939 19674174 -122597270 + MIR SINE MIR 17 262 0 652 270 56 0 chr9 19674543 19674721 -122596723 - MIR SINE MIR -36 226 39 235 303 40 13 chr9 19674912 19674988 -122596456 + MIR SINE MIR 107 184 -78 23 33 0 0 chr9 19676215 19676245 -122595199 + AT_rich Low_complexity Low_complexity 1 30 0 203 115 131 0 chr9 19676258 19676319 -122595125 + (TTAA)n Simple_repeat Simple_repeat 1 69 0 294 119 37 30 chr9 19676390 19676524 -122594920 + (TA)n Simple_repeat Simple_repeat 2 136 0 511 236 57 0 chr9 19676615 19676738 -122594706 - LTR37A LTR ERV1 -251 175 46 360 286 127 24 chr9 19676814 19677027 -122594417 - L2 LINE L2 -15 3298 3064 197 347 14 0 chr9 19678219 19678291 -122593153 - L2 LINE L2 -344 2969 2897 1964 102 31 20 chr9 19679738 19680032 -122591412 - AluSx SINE Alu -15 297 1 21 36 0 0 chr9 19680217 19680245 -122591199 + AT_rich Low_complexity Low_complexity 1 28 0 4166 242 75 16 chr9 19680332 19681740 -122589704 + Zaphod DNA AcHobo 2532 4022 -9 189 107 0 0 chr9 19682643 19682671 -122588773 + (T)n Simple_repeat Simple_repeat 1 28 0 569 256 95 18 chr9 19682818 19682986 -122588458 + MIR SINE MIR 1 181 -81 223 280 147 21 chr9 19682990 19683133 -122588311 - L2 LINE L2 -176 3137 2977 264 184 233 68 chr9 19683216 19683319 -122588125 - MIR SINE MIR -50 212 93 449 282 60 6 chr9 19684507 19684981 -122586463 - L1M LINE L1 -745 5419 4918 344 282 83 68 chr9 19685195 19685337 -122586107 - L1M4 LINE L1 -1501 4714 4576 1862 140 41 0 chr9 19685337 19685651 -122585793 - AluSx SINE Alu 0 325 1 344 282 83 68 chr9 19685651 19686022 -122585422 - L1M4 LINE L1 -1639 4576 4192 562 285 79 70 chr9 19686149 19686656 -122584788 - L1MEc LINE L1 -3546 2669 2198 1792 180 0 0 chr9 19686774 19687068 -122584376 - AluJb SINE Alu -18 294 1 427 302 54 15 chr9 19687284 19687489 -122583955 - L1MEc LINE L1 -4865 1340 1128 378 226 163 0 chr9 19687531 19687721 -122583723 - L1MDa LINE L1 -3106 3023 2803 328 287 56 46 chr9 19687741 19688239 -122583205 - L1MDa LINE L1 -3461 2668 2166 21 0 0 0 chr9 19688350 19688371 -122583073 + AT_rich Low_complexity Low_complexity 1 21 0 205 205 0 0 chr9 19688636 19688675 -122582769 + T-rich Low_complexity Low_complexity 1 39 0 305 328 75 11 chr9 19688775 19689043 -122582401 - L1MDa LINE L1 -4602 1527 1243 608 277 107 64 chr9 19689067 19689147 -122582297 - L1MDa LINE L1 -4886 1233 1158 1118 211 0 4 chr9 19689147 19689384 -122582060 + MER46A DNA MER2_type 1 236 0 608 277 107 64 chr9 19689384 19689959 -122581485 - L1MDa LINE L1 -4961 1158 550 1178 197 56 85 chr9 19690135 19690510 -122580934 - MLT1A1 LTR MaLR -1 364 1 695 200 7 0 chr9 19690510 19690645 -122580799 - MLT1A1-int LTR MaLR 0 1735 1600 774 220 83 49 chr9 19692759 19693023 -122578421 - ORSL DNA AcHobo -2 273 1 1695 179 4 0 chr9 19694477 19694745 -122576699 - AluJo SINE Alu -32 280 12 706 346 88 26 chr9 19695200 19695700 -122575744 + L3 LINE CR1 1046 1576 -1 2156 118 0 3 chr9 19695736 19696033 -122575411 - AluSq SINE Alu -17 296 1 211 367 75 37 chr9 19696033 19696221 -122575223 - L2 LINE L2 -8 3264 3070 268 336 77 34 chr9 19696358 19696566 -122574878 - L2 LINE L2 -222 3050 2834 25 0 0 0 chr9 19696770 19696795 -122574649 + AT_rich Low_complexity Low_complexity 1 25 0 3223 255 139 23 chr9 19697202 19698627 -122572817 + L2 LINE L2 1723 3311 -2 22 0 0 0 chr9 19698909 19698931 -122572513 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr9 19699267 19699288 -122572156 + AT_rich Low_complexity Low_complexity 1 21 0 347 345 28 14 chr9 19699519 19699661 -122571783 - L2 LINE L2 -4 3268 3125 582 285 108 81 chr9 19699947 19700428 -122571016 - L2 LINE L2 -561 2753 2260 195 341 146 39 chr9 19700437 19700642 -122570802 - MIR SINE MIR -6 256 30 2564 222 14 0 chr9 19700917 19701488 -122569956 - L1MC3 LINE L1 -2 7783 7205 257 237 0 79 chr9 19701666 19701742 -122569702 - MIR SINE MIR -114 148 79 1839 102 15 19 chr9 19702145 19702411 -122569033 - AluSg SINE Alu -45 265 1 248 202 169 34 chr9 19704532 19704621 -122566823 + MIR SINE MIR 99 199 -63 833 190 11 0 chr9 19704740 19704919 -122566525 - L1MA7 LINE L1 -10 6281 6101 11618 117 30 68 chr9 19704920 19705494 -122565950 - Tigger1 DNA MER2_type -3 2415 1821 1972 159 0 28 chr9 19705494 19705815 -122565629 + AluSx SINE Alu 1 312 0 11618 117 30 68 chr9 19705815 19707342 -122564102 - Tigger1 DNA MER2_type -597 1821 392 7287 201 38 4 chr9 19707647 19709314 -122562130 + L1 LINE L1 3217 4939 -1207 336 48 0 0 chr9 19710125 19710167 -122561277 + (TG)n Simple_repeat Simple_repeat 1 42 0 288 308 103 0 chr9 19710176 19710283 -122561161 + MER117 DNA MER1_type 53 170 -27 618 296 64 15 chr9 19711630 19711833 -122559611 + MIR SINE MIR 2 214 -48 2269 36 43 4 chr9 19711846 19712148 -122559296 - AluY SINE Alu 0 313 1 286 300 42 8 chr9 19712211 19712331 -122559113 + MIR SINE MIR 124 247 -15 234 91 0 0 chr9 19713509 19713542 -122557902 + (A)n Simple_repeat Simple_repeat 1 33 0 460 267 57 52 chr9 19714473 19714840 -122556604 - L1MC5 LINE L1 -280 7681 7313 254 263 82 67 chr9 19714826 19715020 -122556424 - L1MC4a LINE L1 -393 7415 7219 * 2228 102 0 3 chr9 19715252 19715545 -122555899 + AluSc SINE Alu 1 292 -17 237 368 70 0 chr9 19716038 19716152 -122555292 + MER91A DNA MER1_type 40 161 -35 216 284 27 0 chr9 19716553 19716627 -122554817 + CT-rich Low_complexity Low_complexity 1 76 0 55 40 0 0 chr9 19719623 19719699 -122551745 + AT_rich Low_complexity Low_complexity 1 76 0 282 298 76 57 chr9 19720039 19720117 -122551327 - L1MC4a LINE L1 -2287 5521 5446 2009 135 39 9 chr9 19720117 19720451 -122550993 - MER2 DNA MER2_type 0 344 1 282 298 76 57 chr9 19720451 19720634 -122550810 - L1MC4a LINE L1 -2362 5446 5255 538 327 41 61 chr9 19720791 19721322 -122550122 - L1MC4a LINE L1 -1103 5043 4532 400 353 91 29 chr9 19721322 19721807 -122549637 - HAL1 LINE L1 -1009 1498 984 1209 229 34 48 chr9 19722701 19723054 -122548390 - MLT1B LTR MaLR -42 348 1 192 293 132 70 chr9 19723083 19723424 -122548020 - L2 LINE L2 -1055 2259 1898 215 242 177 0 chr9 19723489 19723551 -122547893 - L2 LINE L2 -18 3254 3182 764 192 110 35 chr9 19724164 19724419 -122547025 + MER102b DNA MER1_type 45 318 -23 216 97 0 0 chr9 19725618 19725649 -122545795 + (A)n Simple_repeat Simple_repeat 1 31 0 180 245 20 0 chr9 19727706 19727755 -122543689 + L2 LINE L2 2713 2762 -552 213 313 45 89 chr9 19727850 19728208 -122543236 + L2 LINE L2 2882 3223 -90 225 244 0 0 chr9 19728870 19728911 -122542533 + (TG)n Simple_repeat Simple_repeat 2 42 0 446 340 25 15 chr9 19728952 19729155 -122542289 + MIR SINE MIR 58 262 0 307 263 0 0 chr9 19730172 19730258 -122541186 + Charlie5 DNA MER1_type 1 75 -2537 678 304 89 40 chr9 19730669 19731041 -122540403 + MLT1J2 LTR MaLR 59 448 -2 7481 26 0 0 chr9 19731102 19732080 -122539364 - L1PA5 LINE L1 -11 6143 5160 3065 61 0 0 chr9 19732080 19732473 -122538971 + L1P LINE L1 4705 5097 -1049 1851 155 0 4 chr9 19733012 19733290 -122538154 - AluSx SINE Alu -35 277 1 21 0 0 0 chr9 19734535 19734556 -122536888 + AT_rich Low_complexity Low_complexity 1 21 0 1684 231 62 38 chr9 19734675 19735541 -122535903 - L1ME1 LINE L1 -289 5877 4985 2363 164 19 19 chr9 19735545 19735971 -122535473 - MSTB LTR MaLR 0 426 1 2749 251 31 33 chr9 19735990 19738166 -122533278 - L1 LINE L1 -3202 4363 2264 370 206 0 15 chr9 19738175 19738243 -122533201 + MER8 DNA MER2_type 1 67 -172 180 200 0 0 chr9 19738364 19738414 -122533030 + (CAGG)n Simple_repeat Simple_repeat 1 50 0 210 191 0 0 chr9 19738419 19738466 -122532978 + A-rich Low_complexity Low_complexity 1 47 0 241 386 53 0 chr9 19738692 19738806 -122532638 + MIR3 SINE MIR 83 202 -6 628 190 9 134 chr9 19738826 19738895 -122532549 - MLT2B1 LTR ERVL 0 520 444 489 84 0 0 chr9 19738895 19738966 -122532478 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 628 190 9 134 chr9 19738966 19739112 -122532332 - MLT2B1 LTR ERVL -76 444 332 483 144 33 0 chr9 19739109 19739199 -122532245 - MLT2B1 LTR ERVL -424 96 4 * 2409 81 0 0 chr9 19740543 19740852 -122530592 - AluY SINE Alu 0 311 3 336 267 67 0 chr9 19741165 19741240 -122530204 - L2 LINE L2 0 3313 3234 456 19 0 0 chr9 19741471 19741524 -122529920 + (TC)n Simple_repeat Simple_repeat 1 53 0 288 0 0 0 chr9 19741523 19741555 -122529889 + (CA)n Simple_repeat Simple_repeat 1 32 0 * 1914 163 38 36 chr9 19742190 19742746 -122528698 + MLT2A2 LTR ERVL 1 554 0 1407 132 0 4 chr9 19742861 19743089 -122528355 - L1PA16 LINE L1 -332 5834 5608 472 259 58 58 chr9 19743848 19744157 -122527287 - L1M4 LINE L1 -1605 4541 4233 262 261 0 0 chr9 19744150 19744215 -122527229 - L1M4 LINE L1 -3112 3034 2970 * 1933 164 0 26 chr9 19744215 19744411 -122527033 - AluJo SINE Alu -10 302 115 3928 68 12 124 chr9 19744411 19745098 -122526346 - LTR66 LTR ERVL 0 610 1 1933 164 0 26 chr9 19745098 19745211 -122526233 - AluJo SINE Alu -197 115 1 272 155 179 0 chr9 19745212 19745296 -122526148 - L1M4 LINE L1 -3169 2977 2879 1817 195 112 6 chr9 19745296 19745762 -122525682 - L1PA16 LINE L1 -1 6165 5651 1572 222 76 28 chr9 19745745 19745957 -122525487 - L1M4 LINE L1 -3238 2908 2708 * 2270 103 3 0 chr9 19745957 19746258 -122525186 + AluSp SINE Alu 1 302 -11 1572 222 76 28 chr9 19746258 19746662 -122524782 - L1M4 LINE L1 -3438 2708 2262 1698 199 0 10 chr9 19746666 19746973 -122524471 + AluJb SINE Alu 3 306 -6 2484 76 0 19 chr9 19746973 19747289 -122524155 + AluY SINE Alu 1 310 -1 2244 109 6 6 chr9 19747304 19747617 -122523827 + AluSp SINE Alu 1 313 0 300 318 12 0 chr9 19747908 19747993 -122523451 - MIR SINE MIR -176 86 1 771 269 81 40 chr9 19748028 19748549 -122522895 - L1ME4a LINE L1 -69 6052 5511 393 262 93 52 chr9 19748602 19748774 -122522670 - MIR SINE MIR 0 262 84 23 54 0 0 chr9 19748936 19748973 -122522471 + AT_rich Low_complexity Low_complexity 1 37 0 752 216 50 37 chr9 19749180 19749398 -122522046 - L1MB8 LINE L1 -5 6173 5953 1502 149 65 4 chr9 19750825 19751073 -122520371 - AluJb SINE Alu -15 297 35 591 314 155 35 chr9 19751092 19751854 -122519590 - L2 LINE L2 -1007 2307 1455 327 132 15 15 chr9 19752112 19752180 -122519264 - L1MB4 LINE L1 -2 6178 6111 3016 176 97 34 chr9 19752198 19753026 -122518418 - L1MB4 LINE L1 -2 6178 5299 22 103 0 0 chr9 19753088 19753166 -122518278 + AT_rich Low_complexity Low_complexity 1 78 0 2615 43 0 3 chr9 19755692 19755996 -122515448 + AluY SINE Alu 7 309 -2 357 333 157 7 chr9 19756141 19756288 -122515156 - MIR SINE MIR -81 181 13 648 262 0 37 chr9 19857232 19857419 -122414025 - MIR SINE MIR -70 192 13 2331 81 19 23 chr9 19857420 19857729 -122413715 - AluSx SINE Alu -4 308 1 226 365 100 6 chr9 19857868 19858038 -122413406 - MIR SINE MIR 0 262 77 229 319 32 11 chr9 19858653 19858747 -122412697 + MIR SINE MIR 20 115 -147 407 277 109 0 chr9 19858808 19858927 -122412517 - MIR SINE MIR -78 184 53 233 91 0 0 chr9 19859102 19859135 -122412309 - MIR SINE MIR -113 149 117 1805 150 46 0 chr9 19859293 19859573 -122411871 + AluJb SINE Alu 1 293 -19 2420 83 3 0 chr9 19859573 19859873 -122411571 + AluSp SINE Alu 1 301 -12 770 230 79 82 chr9 19859962 19860253 -122411191 + AluYa5 SINE Alu 4 293 -8 549 271 36 85 chr9 19860330 19860611 -122410833 - L2 LINE L2 0 3272 3006 193 276 88 109 chr9 19860683 19860944 -122410500 + L2 LINE L2 2851 3105 -167 2014 108 42 11 chr9 19860944 19861230 -122410214 - AluSx SINE Alu -17 295 1 193 276 88 109 chr9 19861230 19861298 -122410146 + L2 LINE L2 3105 3173 -99 560 247 251 4 chr9 19861912 19862155 -122409289 + MLT1H LTR MaLR 247 549 0 893 145 0 0 chr9 19862204 19862342 -122409102 + FRAM SINE Alu 38 175 -1 264 207 43 128 chr9 19862346 19862415 -122409029 + L1MC4a LINE L1 5814 5887 -1921 2343 85 7 10 chr9 19862415 19862720 -122408724 + AluSg SINE Alu 1 304 -6 264 207 43 128 chr9 19862720 19862740 -122408704 + L1MC4a LINE L1 5887 5907 -1901 2258 101 3 13 chr9 19862740 19863047 -122408397 + AluSx SINE Alu 1 304 -8 264 207 43 128 chr9 19863047 19863120 -122408324 + L1MC4a LINE L1 5907 5963 -1845 2579 62 0 0 chr9 19863299 19863603 -122407841 - AluY SINE Alu -7 304 1 573 283 7 0 chr9 19864573 19864725 -122406719 + MER45A DNA AcHobo 6 158 -20 342 252 272 0 chr9 19864880 19865027 -122406417 + MIR SINE MIR 5 191 -71 359 236 42 62 chr9 19865322 19865466 -122405978 - L2 LINE L2 -57 3256 3116 257 254 7 99 chr9 19865593 19865735 -122405709 + MIR SINE MIR 60 188 -74 234 191 0 0 chr9 19866031 19866078 -122405366 + (TGAA)n Simple_repeat Simple_repeat 2 48 0 213 39 0 0 chr9 19866082 19866108 -122405336 + (A)n Simple_repeat Simple_repeat 1 26 0 910 127 8 15 chr9 19866131 19866265 -122405179 + AluSq/x SINE Alu 1 133 -180 5693 153 33 11 chr9 19866280 19867463 -122403981 + L1MC2 LINE L1 5133 6343 -1 2272 96 7 7 chr9 19867511 19867812 -122403632 + AluSp SINE Alu 1 301 -12 1268 124 31 0 chr9 19868317 19868542 -122402902 - L1 LINE L1 -1657 4489 4258 280 281 31 10 chr9 19868673 19868773 -122402671 + MIR SINE MIR 59 161 -47 263 234 13 13 chr9 19868856 19868933 -122402511 - MIR SINE MIR -12 250 174 557 213 0 0 chr9 19868937 19869031 -122402413 - MER81 DNA DNA -1 113 20 318 167 91 0 chr9 19869044 19869110 -122402334 - MIR SINE MIR -111 151 80 354 306 62 14 chr9 19869702 19869846 -122401598 - MIR SINE MIR -110 152 2 217 284 122 34 chr9 19869853 19870001 -122401443 + MIR SINE MIR 76 236 -26 552 284 111 0 chr9 19870118 19870308 -122401136 - MIR SINE MIR -13 249 39 203 299 110 31 chr9 19870550 19870677 -122400767 - L2 LINE L2 -223 3090 2954 250 270 44 88 chr9 19870713 19870939 -122400505 - L2 LINE L2 -68 3204 2989 766 274 237 16 chr9 19872612 19873222 -122398222 - L2 LINE L2 -31 3282 2524 255 337 0 0 chr9 19873468 19873554 -122397890 - MIR SINE MIR -10 252 167 1961 166 63 44 chr9 19873683 19873834 -122397610 + L1MD2 LINE L1 5795 5942 -417 1936 137 7 14 chr9 19873834 19874152 -122397292 - AluSx SINE Alu 0 316 1 1961 166 63 44 chr9 19874152 19874344 -122397100 + L1MD2 LINE L1 5942 6129 -230 234 0 0 0 chr9 19874344 19874370 -122397074 + (TC)n Simple_repeat Simple_repeat 1 26 0 * 261 0 0 0 chr9 19874369 19874398 -122397046 + (CA)n Simple_repeat Simple_repeat 1 29 0 1961 166 63 44 chr9 19874370 19874527 -122396917 + L1MD2 LINE L1 6129 6278 -81 603 116 26 71 chr9 19874527 19874682 -122396762 - MLT2B1 LTR ERVL 0 520 373 2296 104 0 0 chr9 19875220 19875509 -122395935 + AluSq SINE Alu 1 289 -24 29119 144 43 42 chr9 19875509 19879409 -122392035 - ERVL LTR ERVL -435 5329 1436 1468 184 17 109 chr9 19879409 19879811 -122391633 - MLT1A1 LTR MaLR 0 365 1 29119 144 43 42 chr9 19879811 19879897 -122391547 - ERVL LTR ERVL -4328 1436 1352 2172 128 6 13 chr9 19879897 19880209 -122391235 - AluSx SINE Alu -2 310 1 29119 144 43 42 chr9 19880209 19880231 -122391213 - ERVL LTR ERVL -4412 1352 1332 2463 99 0 3 chr9 19880231 19880543 -122390901 - AluSx SINE Alu -1 311 1 231 36 0 0 chr9 19880545 19880573 -122390871 + (TA)n Simple_repeat Simple_repeat 2 29 0 2160 70 38 28 chr9 19880573 19880860 -122390584 - AluY SINE Alu -21 290 1 300 116 130 0 chr9 19880860 19880929 -122390515 + Charlie5 DNA MER1_type 2471 2548 -64 2085 94 0 15 chr9 19880929 19881196 -122390248 - AluSq SINE Alu -50 263 1 29119 144 43 42 chr9 19881196 19882408 -122389036 - ERVL LTR ERVL -4431 1333 25 2036 59 0 0 chr9 19882409 19882646 -122388798 + AluY SINE Alu 1 237 -74 26 0 0 0 chr9 19882701 19882727 -122388717 + AT_rich Low_complexity Low_complexity 1 26 0 328 306 0 19 chr9 19882828 19882936 -122388508 - MIR SINE MIR -70 138 33 2241 109 0 0 chr9 19882940 19883254 -122388190 - AluSx SINE Alu 0 314 1 189 0 0 0 chr9 19883254 19883275 -122388169 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 570 128 0 0 chr9 19883285 19883363 -122388081 - FLAM_A SINE Alu -32 110 33 1661 179 133 96 chr9 19883821 19884560 -122386884 - L1MC5 LINE L1 -30 7931 7166 1038 172 6 0 chr9 19884562 19884725 -122386719 - AluJb SINE Alu -18 294 131 1295 186 55 133 chr9 19884725 19884954 -122386490 - L1MC5 LINE L1 -793 7168 6923 1779 134 34 41 chr9 19884954 19885245 -122386199 + AluJb SINE Alu 1 289 -23 1295 186 55 133 chr9 19885245 19885616 -122385828 - L1MC5 LINE L1 -1038 6923 6615 2606 143 66 75 chr9 19885638 19886275 -122385169 + L1MC2 LINE L1 5714 6344 0 229 254 0 15 chr9 19886271 19886338 -122385106 - L1MC4a LINE L1 -1213 6595 6530 * 1694 170 32 66 chr9 19886453 19886618 -122384826 - MLT1A1 LTR MaLR 0 365 196 1975 151 0 19 chr9 19886618 19886935 -122384509 + AluSx SINE Alu 1 311 -1 1694 170 32 66 chr9 19886935 19887146 -122384298 - MLT1A1 LTR MaLR -169 196 2 488 291 81 61 chr9 19887184 19887479 -122383965 - L1MC4a LINE L1 -1445 6363 6063 201 201 97 142 chr9 19887720 19887759 -122383685 - MIR SINE MIR -26 236 197 2126 139 0 0 chr9 19887759 19888060 -122383384 - AluSx SINE Alu -11 301 1 201 201 97 142 chr9 19888060 19888154 -122383290 - MIR SINE MIR -65 197 109 337 303 76 0 chr9 19888185 19888304 -122383140 - L2 LINE L2 0 3313 3186 292 204 51 10 chr9 19888559 19888657 -122382787 - L1ME4a LINE L1 -12 6109 6008 2141 129 3 16 chr9 19888660 19888688 -122382756 - AluSx SINE Alu -4 308 281 190 0 0 0 chr9 19888688 19888709 -122382735 + (TTTA)n Simple_repeat Simple_repeat 2 64 0 2141 129 3 16 chr9 19888709 19888990 -122382454 - AluSx SINE Alu -31 281 3 415 290 172 5 chr9 19889466 19889687 -122381757 + MIR SINE MIR 5 262 0 431 309 0 43 chr9 19890012 19890088 -122381356 + MIR SINE MIR 2 69 -193 1849 144 0 24 chr9 19890088 19890380 -122381064 - AluJb SINE Alu -22 290 6 431 309 0 43 chr9 19890380 19890465 -122380979 + MIR SINE MIR 69 156 -106 871 286 133 10 chr9 19890576 19890967 -122380477 + MLT1K LTR MaLR 148 586 -2 265 274 0 43 chr9 19890968 19891085 -122380359 + MIR SINE MIR 148 259 -3 551 302 159 64 chr9 19891094 19891162 -122380282 - L1ME4a LINE L1 -20 6101 6041 1859 151 47 27 chr9 19891162 19891461 -122379983 - AluJb SINE Alu -7 305 1 551 302 159 64 chr9 19891461 19891771 -122379673 - L1ME4a LINE L1 -80 6041 5762 234 0 0 0 chr9 19891771 19891797 -122379647 + (TA)n Simple_repeat Simple_repeat 1 26 0 1930 163 3 3 chr9 19891798 19892092 -122379352 - AluJo SINE Alu -10 302 9 551 302 159 64 chr9 19892092 19892164 -122379280 - L1ME4a LINE L1 -358 5763 5605 295 286 0 0 chr9 19892685 19892755 -122378689 + L1M4 LINE L1 4285 4354 -1792 258 278 118 42 chr9 19893458 19893602 -122377842 - MIR3 SINE MIR -37 171 17 279 318 63 10 chr9 19894181 19894350 -122377094 - MIR SINE MIR -20 242 59 300 269 11 32 chr9 19894531 19894624 -122376820 + MIR SINE MIR 84 174 -88 230 281 0 0 chr9 19894651 19894708 -122376736 + (TTA)n Simple_repeat Simple_repeat 2 58 0 191 351 0 27 chr9 19895278 19895352 -122376092 + L2 LINE L2 2686 2757 -557 181 366 204 5 chr9 19895372 19895563 -122375881 - MIR SINE MIR -8 254 26 277 308 35 35 chr9 19895840 19896009 -122375435 + L2 LINE L2 1681 1849 -1465 200 225 0 0 chr9 19896372 19896412 -122375032 + CT-rich Low_complexity Low_complexity 1 40 0 183 326 158 10 chr9 19896500 19896696 -122374748 + L2 LINE L2 2625 2849 -465 290 290 54 120 chr9 19896722 19896805 -122374639 + L2 LINE L2 2853 2940 -332 2243 128 3 0 chr9 19896805 19897109 -122374335 - AluSx SINE Alu -7 305 1 290 290 54 120 chr9 19897109 19897466 -122373978 + L2 LINE L2 2940 3264 -8 2393 110 0 0 chr9 19897488 19897789 -122373655 + AluSx SINE Alu 1 301 -11 281 173 120 0 chr9 19898820 19898895 -122372549 + MLT1K LTR MaLR 501 584 -4 422 283 145 31 chr9 19899680 19899716 -122371728 - MIR SINE MIR -18 244 213 2196 116 6 6 chr9 19899716 19900027 -122371417 - AluSx SINE Alu -1 311 1 422 283 145 31 chr9 19900027 19900149 -122371295 - MIR SINE MIR -49 213 68 1907 162 0 7 chr9 19900727 19901024 -122370420 + AluSx SINE Alu 1 295 -17 2353 109 11 16 chr9 19901043 19901409 -122370035 + THE1B LTR MaLR 1 364 0 573 88 0 0 chr9 19901745 19901825 -122369619 + (TA)n Simple_repeat Simple_repeat 1 80 0 428 294 56 56 chr9 19901834 19902086 -122369358 - L1M4 LINE L1 -3663 2483 2232 1175 185 4 53 chr9 19902345 19902608 -122368836 - AluJo SINE Alu 0 312 76 756 147 0 0 chr9 19902635 19902751 -122368693 - FLAM_C SINE Alu -17 116 1 304 240 36 86 chr9 19902773 19902914 -122368530 - L1ME3 LINE L1 -200 5953 5820 478 123 0 0 chr9 19902979 19903052 -122368392 - AluS SINE Alu -14 296 224 1488 294 74 26 chr9 19903059 19903538 -122367906 - L1ME3 LINE L1 -1158 4971 4516 2256 112 3 0 chr9 19903538 19903833 -122367611 - AluSq SINE Alu -12 301 6 1488 294 74 26 chr9 19903833 19904251 -122367193 - L1ME3 LINE L1 -1613 4516 4016 2511 71 3 7 chr9 19904251 19904561 -122366883 - AluY SINE Alu -2 309 1 1488 294 74 26 chr9 19904561 19904693 -122366751 - L1ME3 LINE L1 -2113 4016 3892 203 211 28 28 chr9 19904750 19904821 -122366623 + (TATAA)n Simple_repeat Simple_repeat 4 74 0 555 290 105 52 chr9 19904837 19905097 -122366347 - L1ME3 LINE L1 -2275 3854 3609 2383 64 42 0 chr9 19905097 19905380 -122366064 + AluY SINE Alu 1 295 -16 555 290 105 52 chr9 19905380 19905432 -122366012 - L1ME3 LINE L1 -2520 3609 3561 189 0 0 0 chr9 19905432 19905453 -122365991 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 2026 161 0 0 chr9 19905459 19905758 -122365686 - AluSx SINE Alu -13 299 1 555 290 105 52 chr9 19905758 19905972 -122365472 - L1ME3 LINE L1 -2572 3557 3292 1687 150 79 0 chr9 19905983 19906250 -122365194 + AluSq SINE Alu 9 296 -17 358 304 30 22 chr9 19906261 19906396 -122365048 - L1ME3 LINE L1 -3274 2855 2720 997 107 0 0 chr9 19906411 19906542 -122364902 - AluSg SINE Alu -179 131 1 627 317 57 24 chr9 19906555 19907171 -122364273 - L1ME3 LINE L1 -3401 2728 2093 1415 201 70 7 chr9 19907262 19907546 -122363898 + AluJo SINE Alu 7 308 -4 991 114 6 6 chr9 19907546 19907713 -122363731 + (GGAA)n Simple_repeat Simple_repeat 3 169 0 371 310 138 18 chr9 19908054 19908260 -122363184 - L1ME3 LINE L1 -4440 1689 1379 1904 153 28 0 chr9 19908265 19908552 -122362892 + AluJb SINE Alu 1 295 -17 287 332 4 80 chr9 19908552 19908581 -122362863 - HAL1 LINE L1 -898 1609 1579 3911 198 17 63 chr9 19908581 19909597 -122361847 + LTR5 LTR ERVK 1 969 0 287 332 4 80 chr9 19909597 19909690 -122361754 - HAL1 LINE L1 -928 1579 1480 1774 127 0 8 chr9 19909690 19909977 -122361467 - AluSx SINE Alu 0 327 43 287 332 4 80 chr9 19909977 19910114 -122361330 - HAL1 LINE L1 -1027 1480 1368 * 1303 243 36 61 chr9 19910100 19910317 -122361127 - L1ME3 LINE L1 -4902 1217 996 524 100 0 0 chr9 19910317 19910397 -122361047 + MADE1 DNA Mariner 1 80 0 1303 243 36 61 chr9 19910397 19910554 -122360890 - L1ME3 LINE L1 -5123 996 837 315 0 0 0 chr9 19910554 19910589 -122360855 + (TG)n Simple_repeat Simple_repeat 1 35 0 1303 243 36 61 chr9 19910589 19910887 -122360557 - L1ME3 LINE L1 -5282 837 561 2100 122 40 0 chr9 19911166 19911341 -122360103 - AluSq SINE Alu -5 308 115 224 89 0 22 chr9 19911341 19911386 -122360058 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 2100 122 40 0 chr9 19911386 19911506 -122359938 - AluSq SINE Alu -198 115 1 254 295 26 0 chr9 19911600 19911678 -122359766 - MIR SINE MIR -103 159 80 182 287 59 94 chr9 19912298 19912505 -122358939 - L2 LINE L2 -83 3189 2993 2107 125 0 58 chr9 19912505 19912832 -122358612 + AluSg SINE Alu 1 308 -2 182 287 59 94 chr9 19912832 19912910 -122358534 - L2 LINE L2 -279 2993 2914 1853 137 39 11 chr9 19913185 19913469 -122357975 + AluSx SINE Alu 1 292 -20 199 281 94 42 chr9 19914064 19914160 -122357284 + MIR SINE MIR 19 119 -143 29 0 0 0 chr9 19915012 19915041 -122356403 + GC_rich Low_complexity Low_complexity 1 29 0 200 170 21 21 chr9 19916152 19916199 -122355245 + (TTCA)n Simple_repeat Simple_repeat 4 50 0 285 274 9 57 chr9 19916534 19916640 -122354804 + MIR SINE MIR 5 105 -157 1372 143 5 27 chr9 19917102 19917325 -122354119 + AluJo SINE Alu 88 305 -7 2385 93 10 6 chr9 19917596 19917908 -122353536 - AluSp SINE Alu 0 313 1 1148 302 39 18 chr9 19918063 19918726 -122352718 - L1ME3A LINE L1 -289 5881 5204 738 135 39 39 chr9 19918761 19918939 -122352505 - L1MA7 LINE L1 0 6291 6114 592 174 8 8 chr9 19919085 19919217 -122352227 + CT-rich Low_complexity Low_complexity 1 132 0 548 292 29 87 chr9 19919218 19919279 -122352165 - L1ME3A LINE L1 -1047 5099 5036 2241 131 0 0 chr9 19919279 19919591 -122351853 - AluSx SINE Alu 0 312 1 548 292 29 87 chr9 19919591 19919931 -122351513 - L1ME3A LINE L1 -1110 5036 4746 841 280 63 63 chr9 19919931 19920296 -122351148 + MLT1J1 LTR MaLR 1 368 -78 2356 105 7 0 chr9 19920296 19920601 -122350843 - AluSc SINE Alu -2 307 1 841 280 63 63 chr9 19920601 19920681 -122350763 + MLT1J1 LTR MaLR 367 446 0 548 292 29 87 chr9 19920681 19920925 -122350519 - L1ME3A LINE L1 -1400 4746 4490 33 25 0 0 chr9 19920958 19920998 -122350446 + AT_rich Low_complexity Low_complexity 1 40 0 304 314 29 0 chr9 19921132 19921237 -122350207 + MER94 DNA DNA 24 131 -3 651 241 68 34 chr9 19921344 19921582 -122349862 - MIR SINE MIR 0 262 12 190 256 183 0 chr9 19922204 19922286 -122349158 + MIR SINE MIR 48 144 -118 344 233 56 11 chr9 19923015 19923105 -122348339 - MER91A DNA MER1_type -99 97 4 189 320 0 0 chr9 19923511 19923561 -122347883 + L2 LINE L2 3254 3303 -10 558 236 0 0 chr9 19923816 19923960 -122347484 + (TCCA)n Simple_repeat Simple_repeat 1 144 0 241 288 104 16 chr9 19923976 19924101 -122347343 - L2 LINE L2 -1 3271 3136 1001 136 39 0 chr9 19924604 19924759 -122346685 + FAM SINE Alu 12 172 -13 303 355 28 43 chr9 19924767 19924978 -122346466 - L1ME4a LINE L1 -40 6081 5874 402 345 40 6 chr9 19925990 19926164 -122345280 + MIR SINE MIR 47 226 -36 221 333 152 10 chr9 19926552 19926855 -122344589 + L2 LINE L2 2401 2746 -568 337 324 71 12 chr9 19926966 19927136 -122344308 - MER5A DNA MER1_type 0 189 10 854 211 11 16 chr9 19927446 19927631 -122343813 - MER5A DNA MER1_type -5 184 1 1855 165 7 3 chr9 19927635 19927932 -122343512 - AluJb SINE Alu -13 299 2 238 360 26 9 chr9 19927964 19928078 -122343366 + L2 LINE L2 2892 3007 -265 330 169 0 0 chr9 19929122 19929187 -122342257 + CT-rich Low_complexity Low_complexity 1 65 0 761 157 0 0 chr9 19929697 19929812 -122341632 + FLAM_C SINE Alu 1 115 -18 545 0 0 15 chr9 19929813 19929879 -122341565 + (TAGA)n Simple_repeat Simple_repeat 1 65 0 881 229 28 5 chr9 19930142 19930356 -122341088 - MER20 DNA MER1_type 0 219 1 423 315 68 24 chr9 19930398 19930649 -122340795 + Tigger8 DNA MER2_type 69 330 -336 835 281 54 0 chr9 19933867 19934088 -122337356 + MIR SINE MIR 6 238 -24 467 243 44 48 chr9 19935504 19935748 -122335696 + MIR SINE MIR 12 256 -6 196 194 0 0 chr9 19935833 19935869 -122335575 + MIR SINE MIR 109 144 -118 372 239 68 26 chr9 19936437 19936554 -122334890 + MIR SINE MIR 20 141 -67 2293 99 13 3 chr9 19936579 19936882 -122334562 + AluSx SINE Alu 6 311 -1 727 233 52 7 chr9 19936885 19937089 -122334355 + MIR SINE MIR 34 255 -7 186 271 51 0 chr9 19937907 19937966 -122333478 + MIR SINE MIR 84 145 -63 2250 95 7 3 chr9 19938023 19938318 -122333126 + AluSg SINE Alu 1 296 -14 296 350 29 7 chr9 19938342 19938479 -122332965 + MIR SINE MIR 86 225 -37 305 282 60 17 chr9 19939451 19939568 -122331876 - MIR SINE MIR -35 227 106 230 244 33 33 chr9 19939894 19939984 -122331460 + GA-rich Low_complexity Low_complexity 5 94 0 423 318 39 34 chr9 19940662 19940895 -122330549 - L1MC4a LINE L1 -1910 5898 5665 195 313 45 80 chr9 19941001 19941113 -122330331 - L2 LINE L2 -1034 2280 2173 233 221 15 59 chr9 19941254 19941322 -122330122 + L2 LINE L2 3208 3272 0 409 298 43 14 chr9 19941700 19941841 -122329603 - MIR SINE MIR -40 222 78 2185 99 0 0 chr9 19941873 19942183 -122329261 - AluSx SINE Alu 0 310 1 214 255 0 0 chr9 19942870 19942921 -122328523 + (TG)n Simple_repeat Simple_repeat 2 52 0 920 195 105 0 chr9 19944137 19944327 -122327117 + MER6B DNA MER2_type 1 210 0 192 264 46 46 chr9 19945569 19945656 -122325788 + MIR SINE MIR 31 117 -145 210 37 0 0 chr9 19945884 19945911 -122325533 + (TTTTA)n Simple_repeat Simple_repeat 3 29 0 307 305 199 0 chr9 19946488 19946639 -122324805 + MIR SINE MIR 63 243 -19 306 295 81 50 chr9 19948146 19948404 -122323040 + L2 LINE L2 2539 2804 -510 2489 68 0 6 chr9 19948876 19949187 -122322257 + AluSc SINE Alu 1 309 0 2712 7 0 0 chr9 19949199 19949498 -122321946 + AluY SINE Alu 1 299 -12 358 247 24 12 chr9 19949804 19949889 -122321555 + L2 LINE L2 3227 3312 -1 441 293 48 2 chr9 19950055 19950255 -122321189 + MIR3 SINE MIR 47 254 -8 286 307 268 21 chr9 19951295 19951461 -122319983 + L3 LINE CR1 963 1087 -490 2313 93 7 3 chr9 19951461 19951771 -122319673 + AluSx SINE Alu 2 312 0 286 307 268 21 chr9 19951771 19951884 -122319560 + L3 LINE CR1 1087 1311 -266 560 248 12 6 chr9 19952707 19953034 -122318410 + (TGGA)n Simple_repeat Simple_repeat 1 328 0 283 291 105 26 chr9 19953718 19953938 -122317506 + MIR3 SINE MIR 4 255 -7 219 276 0 0 chr9 19954094 19954152 -122317292 + L2 LINE L2 3215 3272 0 254 188 0 0 chr9 19954227 19954275 -122317169 + MIR SINE MIR 188 235 -27 652 255 157 74 chr9 19954655 19955053 -122316391 + L2 LINE L2 2244 2608 -705 2258 113 0 0 chr9 19955053 19955362 -122316082 + AluSx SINE Alu 4 312 0 652 255 157 74 chr9 19955362 19955526 -122315918 + L2 LINE L2 2608 2757 -556 844 158 0 0 chr9 19955526 19955659 -122315785 - FLAM_C SINE Alu 0 133 1 652 255 157 74 chr9 19955659 19956044 -122315400 + L2 LINE L2 2757 3300 -13 2254 104 0 0 chr9 19956046 19956355 -122315089 + AluSg SINE Alu 1 309 -1 47 19 0 0 chr9 19956703 19956757 -122314687 + GC_rich Low_complexity Low_complexity 1 54 0 478 299 51 0 chr9 19957174 19957331 -122314113 - MIR SINE MIR -92 170 6 285 354 55 18 chr9 19957817 19957981 -122313463 - MIR SINE MIR -11 251 82 404 284 53 62 chr9 19958563 19958771 -122312673 - L2 LINE L2 -219 3053 2848 455 257 40 46 chr9 19959238 19959390 -122312054 - MIR SINE MIR -88 174 24 1861 53 0 4 chr9 19959505 19959732 -122311712 + AluY SINE Alu 77 302 -9 468 285 95 0 chr9 19960179 19960337 -122311107 + MIR SINE MIR 80 252 -10 481 279 49 77 chr9 19960560 19960649 -122310795 - MIR SINE MIR -20 242 159 2287 98 0 3 chr9 19960649 19960955 -122310489 - AluSx SINE Alu -1 311 7 481 279 49 77 chr9 19960955 19961048 -122310396 - MIR SINE MIR -103 159 65 425 315 67 6 chr9 19961069 19961234 -122310210 - MIR SINE MIR -54 208 34 413 321 14 36 chr9 19962076 19962216 -122309228 + MER91A DNA MER1_type 2 138 -58 250 211 133 11 chr9 19962392 19962482 -122308962 - MIR SINE MIR -44 218 118 * 400 301 0 27 chr9 19962480 19962626 -122308818 - L2 LINE L2 -165 3107 2966 762 298 5 0 chr9 19963220 19963411 -122308033 + MIR SINE MIR 65 256 -6 490 318 51 42 chr9 19963553 19963886 -122307558 - L2 LINE L2 -468 2846 2511 225 254 0 28 chr9 19964861 19964932 -122306512 + (CA)n Simple_repeat Simple_repeat 1 69 0 21 0 0 0 chr9 19966871 19966892 -122304552 + GC_rich Low_complexity Low_complexity 1 21 0 272 173 24 47 chr9 19967360 19967487 -122303957 + (CTGGGG)n Simple_repeat Simple_repeat 4 127 0 450 300 126 22 chr9 19967692 19967915 -122303529 - MIR SINE MIR 0 262 17 189 257 133 0 chr9 19968489 19968594 -122302850 + L2 LINE L2 2379 2497 -817 204 335 125 23 chr9 19968829 19969133 -122302311 + L2 LINE L2 2820 3154 -118 214 264 190 33 chr9 19970913 19971034 -122300410 - L3 LINE CR1 -9 1568 1429 450 323 205 41 chr9 19971129 19971381 -122300063 - L3 LINE CR1 -467 1110 901 2254 67 3 0 chr9 19971381 19971718 -122299726 - AluSp SINE Alu 0 338 1 450 323 205 41 chr9 19971718 19972177 -122299267 - L3 LINE CR1 -676 901 281 453 248 74 22 chr9 19972695 19972843 -122298601 - MIR3 SINE MIR -25 183 28 182 304 101 14 chr9 19972878 19972947 -122298497 - L3 LINE CR1 -1222 355 281 181 237 0 0 chr9 19973002 19973040 -122298404 - MIR3 SINE MIR -8 200 163 289 277 0 0 chr9 19973262 19973327 -122298117 - MIR SINE MIR -63 145 81 260 310 121 0 chr9 19973551 19973667 -122297777 - MIR3 SINE MIR -65 143 14 208 255 0 0 chr9 19974107 19974158 -122297286 + (CA)n Simple_repeat Simple_repeat 1 51 0 387 320 187 24 chr9 19974853 19975184 -122296260 - L2 LINE L2 0 3272 2888 280 250 116 62 chr9 19975221 19975333 -122296111 - L2 LINE L2 -625 2689 2572 411 219 16 32 chr9 19976299 19976422 -122295022 + AluJb SINE Alu 167 287 -25 4285 178 29 39 chr9 19976447 19976670 -122294774 + L1MB3 LINE L1 5110 5334 -849 1926 127 3 3 chr9 19976670 19976988 -122294456 + AluSx SINE Alu 1 318 0 4285 178 29 39 chr9 19976988 19977147 -122294297 + L1MB3 LINE L1 5334 5493 -690 212 0 36 0 chr9 19977147 19977175 -122294269 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 4285 178 29 39 chr9 19977175 19977852 -122293592 + L1MB3 LINE L1 5493 6182 -1 2141 108 10 16 chr9 19977926 19978240 -122293204 + AluSx SINE Alu 1 312 0 1585 188 64 0 chr9 19978456 19978738 -122292706 - AluJo SINE Alu -12 300 1 704 195 24 0 chr9 19979040 19979163 -122292281 - FLAM_A SINE Alu -7 126 1 1942 141 3 0 chr9 19979207 19979504 -122291940 + AluSx SINE Alu 1 298 -14 743 274 8 46 chr9 19979961 19980224 -122291220 - L2 LINE L2 -201 3071 2819 218 318 167 8 chr9 19980491 19980623 -122290821 + MIR SINE MIR 60 212 -50 346 322 119 41 chr9 19980983 19981278 -122290166 + L2 LINE L2 2643 2960 -354 2126 118 0 0 chr9 19981359 19981679 -122289765 + AluSx SINE Alu 1 320 0 225 229 0 0 chr9 19981679 19981727 -122289717 - MIR SINE MIR -98 164 117 628 277 121 9 chr9 19981893 19982117 -122289327 + MIR SINE MIR 2 250 -12 488 247 47 27 chr9 19982374 19982524 -122288920 + MIR SINE MIR 20 172 -90 246 216 81 72 chr9 19982722 19982833 -122288611 - Charlie8 DNA MER1_type -2197 220 109 687 197 197 17 chr9 19982843 19983076 -122288368 + L1ME3A LINE L1 5895 6169 -1 2113 131 0 6 chr9 19983465 19983777 -122287667 + AluSx SINE Alu 1 310 -2 1888 113 0 0 chr9 19984848 19985096 -122286348 - AluSg SINE Alu -28 282 35 288 262 118 73 chr9 19985110 19985341 -122286103 - MIR SINE MIR -5 257 1 558 0 0 0 chr9 19987028 19987090 -122284354 + (TG)n Simple_repeat Simple_repeat 2 63 0 220 333 52 0 chr9 19988296 19988392 -122283052 - L2 LINE L2 -14 3299 3199 397 284 115 65 chr9 19988500 19988963 -122282481 + L2 LINE L2 2620 3255 -17 276 317 42 34 chr9 19989287 19989444 -122282000 + MIR SINE MIR 10 168 -40 228 298 42 47 chr9 19989616 19989807 -122281637 + L2 LINE L2 2892 3081 -191 379 327 13 46 chr9 19989860 19990035 -122281409 + MIR SINE MIR 3 170 -63 258 319 70 32 chr9 19990184 19990369 -122281075 + L2 LINE L2 2894 3085 -187 287 279 47 0 chr9 19990385 19990471 -122280973 - MIR SINE MIR -75 187 98 412 247 70 32 chr9 19991177 19991335 -122280109 + MIR SINE MIR 79 242 -20 197 187 27 80 chr9 19991708 19991783 -122279661 - L2 LINE L2 0 3272 3202 1902 166 23 0 chr9 19992504 19992806 -122278638 + AluJb SINE Alu 4 312 0 846 176 0 0 chr9 19992822 19992953 -122278491 + FLAM_A SINE Alu 1 131 -2 196 297 54 0 chr9 19993046 19993120 -122278324 + L2 LINE L2 2984 3061 -252 1747 152 22 4 chr9 19993357 19993657 -122277787 - AluSx SINE Alu 0 305 1 536 128 13 0 chr9 19993836 19993914 -122277530 - AluSq/x SINE Alu -196 117 39 262 296 0 0 chr9 19993921 19994002 -122277442 + LTR16C LTR ERVL 408 488 -3 197 323 0 0 chr9 19994168 19994233 -122277211 + L2 LINE L2 3240 3304 -9 1730 133 56 4 chr9 19994391 19994661 -122276783 + AluJb SINE Alu 1 284 -28 192 160 0 0 chr9 19994661 19994706 -122276738 + (TA)n Simple_repeat Simple_repeat 2 46 0 1694 143 0 102 chr9 19994716 19994850 -122276594 + AluSx SINE Alu 2 148 -184 2358 109 0 0 chr9 19994850 19995153 -122276291 + AluSx SINE Alu 1 303 -9 1694 143 0 102 chr9 19995153 19995381 -122276063 + AluSx SINE Alu 148 332 0 2157 113 10 13 chr9 19995391 19995700 -122275744 + AluSx SINE Alu 1 308 -4 930 191 48 0 chr9 19996224 19996412 -122275032 + MER20 DNA MER1_type 2 198 -21 366 290 83 21 chr9 19996504 19996697 -122274747 + MIR SINE MIR 46 250 -12 1922 177 25 32 chr9 19996749 19997156 -122274288 + MLT1C LTR MaLR 59 462 -5 314 284 32 0 chr9 19998227 19998322 -122273122 + MIR SINE MIR 41 138 -124 293 314 64 16 chr9 19998412 19998600 -122272844 - MIR SINE MIR -6 256 60 832 117 8 0 chr9 19998604 19998724 -122272720 - FRAM SINE Alu -11 165 45 255 170 0 0 chr9 20002076 20002123 -122269321 + A-rich Low_complexity Low_complexity 1 47 0 347 293 70 6 chr9 20003332 20003489 -122267955 - MIR SINE MIR -76 186 20 25 51 0 0 chr9 20004744 20004783 -122266661 + AT_rich Low_complexity Low_complexity 1 39 0 605 161 0 0 chr9 20004783 20004876 -122266568 - FLAM_C SINE Alu -19 124 32 3593 115 2 2 chr9 20005664 20006177 -122265267 - MER75 DNA T2_type 0 514 2 435 301 143 19 chr9 20006827 20007043 -122264401 + MIR SINE MIR 20 262 0 275 355 63 7 chr9 20007098 20007266 -122264178 - MIR3 SINE MIR -21 187 12 271 262 0 0 chr9 20008862 20008923 -122262521 + MIR SINE MIR 87 147 -115 835 281 31 12 chr9 20009338 20009594 -122261850 - MIR SINE MIR 0 262 2 243 88 0 0 chr9 20011917 20011951 -122259493 + (A)n Simple_repeat Simple_repeat 1 34 0 21 0 0 0 chr9 20013379 20013400 -122258044 + AT_rich Low_complexity Low_complexity 1 21 0 358 234 81 102 chr9 20014507 20014707 -122256737 - L1ME4a LINE L1 -4 6117 5914 213 39 0 0 chr9 20014707 20014733 -122256711 + (TA)n Simple_repeat Simple_repeat 1 26 0 358 234 81 102 chr9 20014733 20015003 -122256441 - L1ME4a LINE L1 -207 5914 5657 1968 140 0 11 chr9 20015349 20015634 -122255810 + AluSx SINE Alu 1 282 -30 246 62 0 0 chr9 20015637 20015669 -122255775 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 27 29 0 0 chr9 20015956 20015990 -122255454 + AT_rich Low_complexity Low_complexity 1 34 0 25 0 0 0 chr9 20016360 20016385 -122255059 + AT_rich Low_complexity Low_complexity 1 25 0 903 174 0 32 chr9 20016388 20016543 -122254901 + AluJo SINE Alu 1 150 -162 1253 237 17 36 chr9 20016548 20016906 -122254538 - LTR27 LTR ERV1 -2 634 284 733 219 0 18 chr9 20016886 20017055 -122254389 - LTR28 LTR ERV1 -854 166 1 * 915 188 6 0 chr9 20017055 20017215 -122254229 + AluJo SINE Alu 147 307 -5 297 0 0 0 chr9 20017268 20017301 -122254143 + (CA)n Simple_repeat Simple_repeat 2 34 0 480 259 121 26 chr9 20018667 20018899 -122252545 + MIR SINE MIR 4 257 -5 2427 196 12 10 chr9 20019027 20019538 -122251906 - L1MB7 LINE L1 -16 6168 5657 357 279 41 46 chr9 20020552 20020735 -122250709 + MIR SINE MIR 78 262 0 410 280 25 19 chr9 20021006 20021163 -122250281 + MIR SINE MIR 10 167 -95 367 200 114 29 chr9 20021885 20022025 -122249419 - L1ME4a LINE L1 -3 6118 5967 344 305 142 11 chr9 20024086 20024276 -122247168 + MIR SINE MIR 20 234 -28 252 258 48 24 chr9 20024623 20024747 -122246697 + L1MEd LINE L1 44 170 -5949 391 330 99 0 chr9 20025052 20025285 -122246159 + L1MEd LINE L1 561 816 -5303 2599 108 59 5 chr9 20025292 20025698 -122245746 - MSTA LTR MaLR 0 428 1 542 270 100 32 chr9 20025703 20026014 -122245430 + L1ME3A LINE L1 5610 5941 -229 2168 149 6 3 chr9 20026386 20026722 -122244722 + MER1B DNA MER1_type 1 337 0 1648 115 152 7 chr9 20027301 20027571 -122243873 - AluSg1 SINE Alu 0 309 1 23 54 0 0 chr9 20028217 20028254 -122243190 + AT_rich Low_complexity Low_complexity 1 37 0 583 178 19 130 chr9 20028266 20028474 -122242970 - MIR SINE MIR -33 229 45 2266 50 0 53 chr9 20028549 20028878 -122242566 - AluY SINE Alu 0 313 1 403 248 60 72 chr9 20029157 20029310 -122242134 - MIR SINE MIR -65 143 3 451 323 0 31 chr9 20029849 20030010 -122241434 + MIR SINE MIR 23 178 -84 4346 139 21 56 chr9 20030012 20030661 -122240783 + L1PB4 LINE L1 5362 5977 -179 2350 105 0 0 chr9 20030661 20030957 -122240487 + AluSq SINE Alu 1 296 -17 4346 139 21 56 chr9 20030957 20031129 -122240315 + L1PB4 LINE L1 5977 6154 -2 196 338 0 0 chr9 20031140 20031214 -122240230 + MIR SINE MIR 186 259 -3 21 0 0 0 chr9 20032646 20032667 -122238777 + AT_rich Low_complexity Low_complexity 1 21 0 224 254 117 45 chr9 20033071 20033237 -122238207 - MIR SINE MIR -65 143 20 546 274 19 6 chr9 20034678 20034835 -122236609 - MER5B DNA MER1_type -18 160 2 28 0 0 0 chr9 20034961 20034989 -122236455 + AT_rich Low_complexity Low_complexity 1 28 0 1646 195 7 10 chr9 20034989 20035297 -122236147 - AluJb SINE Alu -5 307 1 401 55 0 0 chr9 20036009 20036064 -122235380 - L1PA6 LINE L1 -3 6151 6097 3168 87 11 104 chr9 20036230 20036759 -122234685 - LTR12 LTR ERV1 -234 480 1 2227 103 0 3 chr9 20037185 20037477 -122233967 + AluSx SINE Alu 1 291 -21 24 67 0 0 chr9 20037572 20037617 -122233827 + AT_rich Low_complexity Low_complexity 1 45 0 688 262 109 14 chr9 20037783 20038004 -122233440 + MIR SINE MIR 11 252 -10 2267 110 10 3 chr9 20038221 20038530 -122232914 - AluSx SINE Alu -1 311 1 337 204 68 23 chr9 20038894 20038982 -122232462 + MIR SINE MIR 168 259 -3 198 0 0 0 chr9 20039479 20039501 -122231943 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 1701 163 134 25 chr9 20039790 20040237 -122231207 + LTR54B LTR ERV1 1 496 -2 358 299 130 0 chr9 20041981 20042135 -122229309 - MIR SINE MIR 0 262 89 345 223 176 40 chr9 20044111 20044259 -122227185 + MLT1H LTR MaLR 379 546 -3 565 180 168 43 chr9 20044517 20044678 -122226766 - MER5A DNA MER1_type 0 189 9 1811 146 124 64 chr9 20044705 20045109 -122226335 - MSTA LTR MaLR 0 428 1 261 209 191 36 chr9 20045649 20045759 -122225685 - L2 LINE L2 -1 3271 3145 353 237 20 96 chr9 20047657 20047855 -122223589 + L1ME4a LINE L1 5813 5995 -126 21 0 0 0 chr9 20047874 20047895 -122223549 + AT_rich Low_complexity Low_complexity 1 21 0 354 274 124 24 chr9 20048474 20048854 -122222590 - L1M4 LINE L1 -3527 2619 2202 1834 175 0 10 chr9 20048927 20049236 -122222208 - AluJb SINE Alu -6 306 1 180 0 0 0 chr9 20049385 20049405 -122222039 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2191 114 0 0 chr9 20049418 20049715 -122221729 - AluSg SINE Alu -11 299 3 204 111 0 0 chr9 20051445 20051481 -122219963 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 802 125 0 0 chr9 20052115 20052227 -122219217 - FRAM SINE Alu -19 157 46 2407 77 3 3 chr9 20052475 20052786 -122218658 - AluY SINE Alu 0 311 1 459 287 9 0 chr9 20054047 20054155 -122217289 - MER81 DNA DNA -5 109 1 437 247 103 49 chr9 20054446 20054669 -122216775 + MLT1L LTR MaLR 368 602 -13 207 255 0 0 chr9 20055153 20055200 -122216244 + GA-rich Low_complexity Low_complexity 2 48 0 247 255 47 7 chr9 20057116 20057265 -122214179 + (TTAAA)n Simple_repeat Simple_repeat 2 156 0 24 32 0 0 chr9 20057265 20057296 -122214148 + AT_rich Low_complexity Low_complexity 1 31 0 398 115 0 0 chr9 20057476 20057528 -122213916 + AluJ/FRAM SINE Alu 231 282 -20 290 260 10 40 chr9 20058307 20058407 -122213037 - HsTC2 DNA Tc2 -1799 99 3 330 297 54 7 chr9 20059115 20059263 -122212181 - MER103 DNA DNA -10 156 2 194 244 44 0 chr9 20059398 20059443 -122212001 - L2 LINE L2 -556 2758 2712 286 309 0 0 chr9 20059496 20059564 -122211880 - L2 LINE L2 0 3313 3246 297 317 41 28 chr9 20059671 20059816 -122211628 - L2 LINE L2 -4 3268 3122 447 19 0 0 chr9 20059940 20059992 -122211452 + (TA)n Simple_repeat Simple_repeat 1 52 0 2158 106 0 35 chr9 20060001 20060313 -122211131 - AluSx SINE Alu -11 301 1 186 118 0 0 chr9 20060586 20060620 -122210824 + (CAA)n Simple_repeat Simple_repeat 3 36 0 233 29 0 0 chr9 20060821 20060856 -122210588 + L1PA3 LINE L1 6120 6154 -1 738 254 62 0 chr9 20060886 20061146 -122210298 - MER69 DNA AcHobo -236 2290 2015 * 2520 258 78 36 chr9 20061145 20061914 -122209530 - MER69 DNA AcHobo -425 801 1 236 378 115 35 chr9 20062813 20063454 -122207990 + L2 LINE L2 2353 3046 -226 590 264 104 26 chr9 20063541 20063734 -122207710 - MIR SINE MIR -8 254 47 2210 128 0 0 chr9 20063841 20064146 -122207298 - AluSx SINE Alu -7 305 1 264 344 49 33 chr9 20064146 20064268 -122207176 + L2 LINE L2 3142 3265 -7 21 36 0 0 chr9 20064280 20064308 -122207136 + AT_rich Low_complexity Low_complexity 1 28 0 1951 130 0 7 chr9 20066952 20067293 -122204151 - AluSx SINE Alu 0 339 1 438 233 98 78 chr9 20067443 20067636 -122203808 + MIR SINE MIR 24 220 -42 522 367 52 46 chr9 20067645 20068013 -122203431 - L2 LINE L2 0 3272 2903 497 335 174 19 chr9 20068017 20068504 -122202940 - L2 LINE L2 -1037 2277 1715 1876 138 0 7 chr9 20068849 20069125 -122202319 + AluSx SINE Alu 1 274 -38 441 333 9 0 chr9 20069164 20069278 -122202166 - L2 LINE L2 -22 3250 3136 203 245 42 189 chr9 20069678 20069764 -122201680 - MIR3 SINE MIR -6 202 144 2219 125 3 0 chr9 20069764 20070076 -122201368 + AluSq SINE Alu 1 313 0 203 245 42 189 chr9 20070076 20070132 -122201312 - MIR3 SINE MIR -64 144 81 220 197 15 15 chr9 20070375 20070441 -122201003 + (TA)n Simple_repeat Simple_repeat 2 67 0 272 178 27 14 chr9 20070472 20070545 -122200899 + (TA)n Simple_repeat Simple_repeat 1 74 0 343 295 36 18 chr9 20070645 20070811 -122200633 - L1M4 LINE L1 -2056 4090 3922 3885 93 17 25 chr9 20070859 20071447 -122199997 - L1PA11 LINE L1 0 6174 5592 1934 123 3 71 chr9 20071500 20071824 -122199620 - AluSc SINE Alu -7 302 1 386 0 41 0 chr9 20071825 20071874 -122199570 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 1823 150 11 17 chr9 20071874 20072161 -122199283 - AluJb SINE Alu -27 285 1 1195 232 50 138 chr9 20072267 20073562 -122197882 - L1MC5 LINE L1 -60 7901 6721 378 329 13 60 chr9 20073567 20073809 -122197635 - L1M4 LINE L1 -2391 3755 3528 2258 88 0 50 chr9 20073809 20074127 -122197317 - AluSq SINE Alu -11 302 1 378 329 13 60 chr9 20074127 20074182 -122197262 - L1M4 LINE L1 -2618 3528 3472 236 235 25 67 chr9 20074184 20074303 -122197141 - L1MEd LINE L1 -5988 131 18 5157 273 51 15 chr9 20075091 20076901 -122194543 + L1MD2 LINE L1 39 1914 -4482 8157 237 78 30 chr9 20076926 20080025 -122191419 + L1MD2 LINE L1 2009 5227 -988 1234 244 32 48 chr9 20080053 20080394 -122191050 + L1MD2 LINE L1 5656 5992 -436 2347 84 10 0 chr9 20080394 20080690 -122190754 - AluSg SINE Alu -11 299 1 1234 244 32 48 chr9 20080690 20080721 -122190723 + L1MD2 LINE L1 5992 6022 -406 387 77 0 0 chr9 20080797 20080849 -122190595 + MADE1 DNA Mariner 28 79 -1 196 333 0 0 chr9 20080928 20080982 -122190462 - L2 LINE L2 -687 2627 2574 390 324 27 0 chr9 20081488 20081636 -122189808 + MER117 DNA MER1_type 11 162 -35 245 313 24 12 chr9 20082026 20082109 -122189335 - MIR SINE MIR -108 154 71 191 36 36 0 chr9 20082110 20082138 -122189306 + (CTGGGG)n Simple_repeat Simple_repeat 1 29 0 316 281 105 9 chr9 20082347 20082461 -122188983 - MIR SINE MIR -127 135 11 244 278 0 42 chr9 20084472 20084544 -122186900 - L2 LINE L2 -4 3268 3200 341 376 23 8 chr9 20085054 20085187 -122186257 + L3b LINE CR1 1443 1577 -6 188 319 124 26 chr9 20085287 20085400 -122186044 - L2 LINE L2 -17 3255 3132 202 111 0 44 chr9 20086094 20086139 -122185305 + (TC)n Simple_repeat Simple_repeat 2 44 0 1533 175 10 32 chr9 20086533 20086842 -122184602 + AluJo SINE Alu 3 304 -8 217 276 143 38 chr9 20087683 20087788 -122183656 - MIR SINE MIR -131 131 16 1305 176 45 77 chr9 20089287 20089600 -122181844 + AluJo SINE Alu 10 312 0 210 273 0 0 chr9 20090073 20090128 -122181316 + (TA)n Simple_repeat Simple_repeat 1 55 0 2324 104 0 0 chr9 20090746 20091053 -122180391 - AluSx SINE Alu -5 307 1 298 317 195 0 chr9 20091073 20091196 -122180248 - MER5A DNA MER1_type 0 189 43 641 215 8 8 chr9 20092484 20092614 -122178830 - L3 LINE CR1 -2 1575 1446 870 312 108 64 chr9 20092659 20093424 -122178020 - L3 LINE CR1 -343 1234 436 216 309 44 0 chr9 20093482 20093550 -122177894 - L3 LINE CR1 -1071 506 436 247 257 18 106 chr9 20093632 20093745 -122177699 + MIR SINE MIR 105 207 -55 315 319 31 66 chr9 20095332 20095558 -122175886 - L2 LINE L2 -4 3309 3092 226 295 150 29 chr9 20095608 20095781 -122175663 + L2 LINE L2 2672 2865 -449 474 292 0 56 chr9 20095871 20096015 -122175429 + L2 LINE L2 3136 3271 -1 184 343 71 40 chr9 20096146 20096245 -122175199 - L2 LINE L2 -22 3291 3190 239 259 159 65 chr9 20096277 20096447 -122174997 - L2 LINE L2 -9 3304 3119 1555 132 24 29 chr9 20096625 20096939 -122174505 - THE1B LTR MaLR 0 355 1 299 336 139 19 chr9 20097294 20097726 -122173718 + L2 LINE L2 1557 2040 -1274 726 309 73 19 chr9 20097779 20098096 -122173348 - LTR16A LTR ERVL -18 432 99 224 329 13 0 chr9 20099162 20099238 -122172206 + GA-rich Low_complexity Low_complexity 5 81 0 186 167 0 0 chr9 20099955 20099991 -122171453 + T-rich Low_complexity Low_complexity 1 36 0 2218 96 3 0 chr9 20100336 20100628 -122170816 - AluSg SINE Alu -17 293 1 290 296 37 0 chr9 20100665 20100746 -122170698 + L2 LINE L2 3227 3310 -3 230 311 87 3 chr9 20100744 20100914 -122170530 - MIR SINE MIR -34 228 3 * 26 30 0 0 chr9 20101562 20101595 -122169849 + AT_rich Low_complexity Low_complexity 1 33 0 1652 161 82 37 chr9 20101931 20102286 -122169158 + L1MB7 LINE L1 5795 6165 -19 659 301 51 19 chr9 20105188 20105404 -122166040 - MIR SINE MIR -15 247 25 691 258 160 18 chr9 20105832 20106057 -122165387 - MIR SINE MIR -3 259 3 453 329 61 43 chr9 20106808 20107039 -122164405 - MIR SINE MIR 0 262 28 255 79 0 0 chr9 20108976 20109014 -122162430 + (TC)n Simple_repeat Simple_repeat 2 39 0 1949 227 132 70 chr9 20109421 20110586 -122160858 - Charlie2a DNA MER1_type -6 2856 1620 2056 237 27 10 chr9 20110588 20111161 -122160283 + L1ME1 LINE L1 5236 5816 -350 850 169 62 56 chr9 20111171 20111349 -122160095 + L1ME1 LINE L1 6003 6334 0 314 240 0 13 chr9 20111352 20111427 -122160017 - Charlie2a DNA MER1_type -1227 1635 1562 344 167 14 0 chr9 20111524 20111596 -122159848 + (TA)n Simple_repeat Simple_repeat 1 73 0 1659 243 94 31 chr9 20111658 20112230 -122159214 - Charlie2a DNA MER1_type -2247 615 8 1819 200 40 38 chr9 20112676 20112883 -122158561 - MSTD LTR MaLR 0 396 186 2227 85 3 10 chr9 20112883 20113176 -122158268 - AluSp SINE Alu -22 291 1 1819 200 40 38 chr9 20113176 20113363 -122158081 - MSTD LTR MaLR -210 186 1 4896 256 69 27 chr9 20113363 20114711 -122156733 - MSTD-int LTR MaLR 0 1735 332 1034 200 14 9 chr9 20114711 20114926 -122156518 - HERVL-B3 LTR ERVL -5438 216 1 2837 168 30 51 chr9 20114926 20115492 -122155952 - MLT2B3 LTR ERVL 0 554 1 25 83 0 0 chr9 20115712 20115772 -122155672 + AT_rich Low_complexity Low_complexity 1 60 0 651 269 131 57 chr9 20116841 20117176 -122154268 - L3b LINE CR1 -121 1462 1103 411 281 116 43 chr9 20117682 20117984 -122153460 + L2 LINE L2 2970 3293 -20 1530 191 16 16 chr9 20118293 20118597 -122152847 - AluJo SINE Alu -8 304 1 251 122 0 0 chr9 20118776 20118817 -122152627 + L1ME3A LINE L1 6126 6166 -4 805 224 38 76 chr9 20119160 20119424 -122152020 + MER112 DNA MER1_type 6 259 -1 285 254 32 0 chr9 20119765 20119828 -122151616 - MIR3 SINE MIR -7 201 137 440 287 9 9 chr9 20120414 20120529 -122150915 - L2 LINE L2 -1 3312 3198 597 94 71 39 chr9 20122315 20122442 -122149002 - L1MA8 LINE L1 0 6291 6161 853 212 58 16 chr9 20122872 20123061 -122148383 + MER8 DNA MER2_type 43 239 0 703 258 8 0 chr9 20123287 20123419 -122148025 - L2 LINE L2 -6 3266 3134 25 31 0 0 chr9 20123437 20123469 -122147975 + AT_rich Low_complexity Low_complexity 1 32 0 2214 131 0 0 chr9 20123620 20123932 -122147512 + AluSx SINE Alu 1 312 0 2447 180 82 39 chr9 20124332 20124893 -122146551 - L1MB2 LINE L1 -2 6169 5585 321 253 51 13 chr9 20124910 20124989 -122146455 - L2 LINE L2 0 3313 3232 852 274 144 24 chr9 20126310 20126693 -122144751 - MLT1J LTR MaLR -82 429 1 2178 98 0 7 chr9 20126700 20127014 -122144430 - AluSx SINE Alu 0 312 1 25 23 0 23 chr9 20127457 20127472 -122143972 + AT_rich Low_complexity Low_complexity 1 15 -27 773 66 82 0 chr9 20127472 20127594 -122143850 + L1MA8 LINE L1 6150 6281 -10 25 23 0 23 chr9 20127594 20127621 -122143823 + AT_rich Low_complexity Low_complexity 15 42 0 279 385 35 42 chr9 20128013 20128156 -122143288 - L2 LINE L2 -8 3264 3123 404 290 21 34 chr9 20128556 20128820 -122142624 - L2 LINE L2 -217 3055 2771 279 184 0 0 chr9 20129092 20129141 -122142303 + L2 LINE L2 3216 3264 -8 206 30 91 0 chr9 20129272 20129305 -122142139 + T-rich Low_complexity Low_complexity 1 36 0 181 308 44 124 chr9 20129440 20129690 -122141754 - MIR SINE MIR -13 249 20 432 238 143 0 chr9 20130217 20130343 -122141101 + MIR SINE MIR 2 145 -117 317 265 41 0 chr9 20130343 20130441 -122141003 - LTR67 LTR ERVL 0 557 456 253 278 78 17 chr9 20130748 20130863 -122140581 - LTR67 LTR ERVL -338 219 98 503 248 40 0 chr9 20130906 20131031 -122140413 + MIR SINE MIR 130 259 -3 292 284 0 11 chr9 20131149 20131244 -122140200 + MIR SINE MIR 123 216 -46 205 156 22 22 chr9 20132215 20132260 -122139184 + (TA)n Simple_repeat Simple_repeat 1 45 0 446 261 46 50 chr9 20132260 20132449 -122138995 + MIR SINE MIR 14 212 -50 186 43 0 0 chr9 20135030 20135053 -122136391 + (CCCA)n Simple_repeat Simple_repeat 1 23 0 288 53 0 0 chr9 20135318 20135356 -122136088 + (TG)n Simple_repeat Simple_repeat 2 39 0 23 33 0 0 chr9 20136484 20136514 -122134930 + AT_rich Low_complexity Low_complexity 1 30 0 22 70 0 0 chr9 20136992 20137035 -122134409 + AT_rich Low_complexity Low_complexity 1 43 0 1275 252 35 65 chr9 20141135 20141567 -122129877 + MLT1J2 LTR MaLR 3 421 -29 1430 102 16 0 chr9 20142226 20142412 -122129032 + AluSq SINE Alu 1 189 -124 21 0 0 0 chr9 20142465 20142486 -122128958 + AT_rich Low_complexity Low_complexity 1 21 0 292 338 15 53 chr9 20144052 20144185 -122127259 + L2 LINE L2 3145 3272 0 21 0 0 0 chr9 20144217 20144238 -122127206 + AT_rich Low_complexity Low_complexity 1 21 0 2404 75 0 7 chr9 20144514 20144822 -122126622 + AluY SINE Alu 6 311 0 425 234 0 0 chr9 20145072 20145149 -122126295 - L2 LINE L2 -20 3252 3176 674 207 35 35 chr9 20145995 20146164 -122125280 - MIR SINE MIR -50 212 44 331 311 104 70 chr9 20146359 20146745 -122124699 - L2 LINE L2 -30 3242 2844 223 254 0 90 chr9 20147048 20147115 -122124329 + L2 LINE L2 3207 3267 -5 1903 150 0 7 chr9 20147391 20147677 -122123767 + AluJb SINE Alu 7 290 -22 189 287 223 0 chr9 20148537 20148631 -122122813 - MIR SINE MIR -29 233 119 417 240 64 35 chr9 20148843 20149014 -122122430 + MER104 DNA MER2_type 1 176 -4 282 299 221 7 chr9 20149302 20149456 -122121988 + MER5A DNA MER1_type 1 187 -2 639 276 154 14 chr9 20149460 20149681 -122121763 + MIR SINE MIR 11 262 0 467 229 57 63 chr9 20149954 20150129 -122121315 - MER5B DNA MER1_type -4 174 1 202 246 88 0 chr9 20150900 20150957 -122120487 + MIR SINE MIR 160 221 -41 218 292 15 0 chr9 20151290 20151355 -122120089 + G-rich Low_complexity Low_complexity 2 67 0 266 266 114 82 chr9 20153692 20153876 -122117568 - MIR3 SINE MIR -6 202 13 217 369 58 10 chr9 20153955 20154058 -122117386 - L2 LINE L2 -11 3302 3195 356 325 81 44 chr9 20154818 20154978 -122116466 - L2 LINE L2 -2 3270 3105 2042 108 38 0 chr9 20155040 20155327 -122116117 + AluSx SINE Alu 1 298 -14 190 354 24 0 chr9 20155582 20155664 -122115780 - L2 LINE L2 -465 2849 2766 214 321 36 48 chr9 20157017 20157101 -122114343 - L2 LINE L2 -81 3191 3109 23 0 0 0 chr9 20158503 20158526 -122112918 + AT_rich Low_complexity Low_complexity 1 23 0 373 303 96 77 chr9 20159214 20159302 -122112142 - MIR SINE MIR -31 231 146 1942 124 31 3 chr9 20159302 20159592 -122111852 - AluSq SINE Alu -15 298 1 373 303 96 77 chr9 20159592 20159711 -122111733 - MIR SINE MIR -116 146 20 358 310 62 7 chr9 20159728 20159873 -122111571 + MIR SINE MIR 96 248 -14 2077 126 23 0 chr9 20162192 20162494 -122108950 + AluJo SINE Alu 1 309 -3 32 26 0 0 chr9 20163869 20163908 -122107536 + AT_rich Low_complexity Low_complexity 1 39 0 2056 139 48 65 chr9 20163985 20164385 -122107059 - L1MB3 LINE L1 -9 6174 5781 180 0 0 0 chr9 20164385 20164405 -122107039 + (TA)n Simple_repeat Simple_repeat 1 20 0 2056 139 48 65 chr9 20164405 20164463 -122106981 - L1MB3 LINE L1 -402 5781 5724 592 265 19 57 chr9 20164464 20164675 -122106769 - MIR SINE MIR -54 208 6 240 111 0 0 chr9 20164934 20164970 -122106474 + (TG)n Simple_repeat Simple_repeat 1 36 0 447 299 35 28 chr9 20164979 20165123 -122106321 - MIR SINE MIR -103 159 15 244 351 45 0 chr9 20166837 20166948 -122104496 + L2 LINE L2 3193 3308 -5 320 100 50 0 chr9 20168468 20168528 -122102916 + MADE1 DNA Mariner 5 67 -13 2206 109 7 0 chr9 20168866 20169169 -122102275 + AluSq SINE Alu 1 305 -8 21 36 0 0 chr9 20169650 20169678 -122101766 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr9 20169724 20169746 -122101698 + AT_rich Low_complexity Low_complexity 1 22 0 2938 6 0 0 chr9 20169866 20170184 -122101260 + AluYb8 SINE Alu 1 318 0 563 283 84 51 chr9 20170497 20170734 -122100710 - MLT1H LTR MaLR -195 354 110 25 75 0 0 chr9 20172367 20172420 -122099024 + AT_rich Low_complexity Low_complexity 1 53 0 299 163 0 0 chr9 20173471 20173520 -122097924 - L2 LINE L2 0 3313 3265 21 57 0 0 chr9 20173685 20173720 -122097724 + AT_rich Low_complexity Low_complexity 1 35 0 202 171 86 0 chr9 20173788 20173823 -122097621 + L2 LINE L2 3220 3257 -15 180 227 0 45 chr9 20174028 20174072 -122097372 - MIR3 SINE MIR -24 184 143 1516 188 15 6 chr9 20174104 20174428 -122097016 - L1MB1 LINE L1 0 6168 5842 5313 180 66 38 chr9 20174430 20175284 -122096160 - L1MB1 LINE L1 -964 5182 4280 2421 58 10 3 chr9 20175284 20175593 -122095851 - AluY SINE Alu 0 311 1 5313 180 66 38 chr9 20175593 20176019 -122095425 - L1MB1 LINE L1 -1866 4280 3867 746 258 0 28 chr9 20176023 20176205 -122095239 + MER5B DNA MER1_type 2 178 0 1805 168 0 0 chr9 20176293 20176590 -122094854 - AluSx SINE Alu -7 305 9 180 0 0 0 chr9 20176977 20176997 -122094447 + (AGTTG)n Simple_repeat Simple_repeat 2 21 0 189 107 0 0 chr9 20177051 20177079 -122094365 + (A)n Simple_repeat Simple_repeat 1 28 0 225 159 0 0 chr9 20177189 20177233 -122094211 + GA-rich Low_complexity Low_complexity 1 44 0 254 354 20 0 chr9 20177566 20177665 -122093779 + MIR SINE MIR 41 141 -121 253 229 0 0 chr9 20177673 20177721 -122093723 + L2 LINE L2 3262 3309 -4 3574 21 39 0 chr9 20178381 20178813 -122092631 - L1PA2 LINE L1 0 6155 5707 260 135 0 19 chr9 20178946 20178998 -122092446 + (TTCC)n Simple_repeat Simple_repeat 2 52 0 3220 148 13 2 chr9 20179117 20179657 -122091787 - L1PB4 LINE L1 -1 6155 5610 1621 118 4 0 chr9 20179661 20179890 -122091554 - AluSg/x SINE Alu -1 309 80 1142 117 6 0 chr9 20182243 20182422 -122089022 + L1MA2 LINE L1 6125 6304 0 40 49 0 0 chr9 20182444 20182505 -122088939 + AT_rich Low_complexity Low_complexity 1 61 0 27 29 0 0 chr9 20182705 20182739 -122088705 + AT_rich Low_complexity Low_complexity 1 34 0 1027 138 29 0 chr9 20183092 20183266 -122088178 + L1PA16 LINE L1 5979 6157 -9 27848 49 2 1 chr9 20183404 20187673 -122083771 - L1PA5 LINE L1 0 6154 1880 661 233 0 31 chr9 20187958 20188117 -122083327 + FRAM SINE Alu 20 173 -3 2128 114 0 0 chr9 20188860 20189141 -122082303 - AluSx SINE Alu -31 281 1 2957 97 52 52 chr9 20189151 20189668 -122081776 - L1PA11 LINE L1 -2 6172 5656 533 313 99 14 chr9 20190381 20190592 -122080852 + MIR SINE MIR 26 254 -8 182 88 0 29 chr9 20190866 20190900 -122080544 + (CTTTG)n Simple_repeat Simple_repeat 2 34 0 242 337 174 0 chr9 20191163 20191261 -122080183 - MIR SINE MIR -64 144 30 502 286 50 0 chr9 20191651 20191791 -122079653 - MIR SINE MIR -5 257 111 191 298 0 0 chr9 20192722 20192769 -122078675 + L2 LINE L2 3221 3267 -5 895 269 4 13 chr9 20192785 20193012 -122078432 + MIR SINE MIR 2 226 -36 1200 268 27 27 chr9 20193237 20193648 -122077796 + L1ME4a LINE L1 5494 5904 -217 342 261 72 29 chr9 20193672 20193810 -122077634 + L1ME4a LINE L1 5973 6116 -5 310 175 18 0 chr9 20194686 20194743 -122076701 - L2 LINE L2 0 3313 3256 642 175 0 0 chr9 20195299 20195413 -122076031 + FLAM_A SINE Alu 24 137 -5 242 273 18 0 chr9 20195557 20195612 -122075832 + L2 LINE L2 2928 2983 -330 5659 113 55 60 chr9 20195630 20196617 -122074827 - THE1C-int LTR MaLR -598 982 1 1934 167 27 19 chr9 20196617 20196989 -122074455 - THE1C LTR MaLR 0 375 1 658 288 169 47 chr9 20198118 20198563 -122072881 - L2 LINE L2 -11 3302 2804 1577 174 16 44 chr9 20198616 20199051 -122072393 + AluJo SINE Alu 1 426 0 340 301 101 27 chr9 20199053 20199272 -122072172 - L2 LINE L2 -559 2755 2521 437 283 9 0 chr9 20199401 20199507 -122071937 + MIR3 SINE MIR 95 201 -7 201 251 106 73 chr9 20200234 20200413 -122071031 - L2 LINE L2 -19 3294 3110 250 258 0 32 chr9 20200424 20200486 -122070958 + L2 LINE L2 3174 3233 -39 2074 209 114 10 chr9 20200514 20201006 -122070438 + MER119 DNA MER1_type 41 583 0 2209 111 3 0 chr9 20201870 20202167 -122069277 + AluSq SINE Alu 4 301 -12 265 334 59 8 chr9 20202249 20202369 -122069075 + MIR SINE MIR 4 141 -67 264 248 105 40 chr9 20202427 20202580 -122068864 + L1MC/D LINE L1 5726 5885 -302 197 365 29 0 chr9 20202881 20202985 -122068459 + MIR SINE MIR 124 230 -32 1996 168 34 11 chr9 20203015 20203396 -122068048 + MLT1B LTR MaLR 1 390 0 429 236 27 18 chr9 20204685 20204795 -122066649 + MIR SINE MIR 63 173 -89 345 320 64 32 chr9 20205795 20205951 -122065493 - MIR SINE MIR -32 230 70 582 182 10 0 chr9 20206961 20207060 -122064384 - FRAM SINE Alu -22 154 55 189 0 0 0 chr9 20208272 20208293 -122063151 + (A)n Simple_repeat Simple_repeat 1 21 0 3131 192 26 12 chr9 20208712 20209354 -122062090 - MER82 DNA MER2_type -1 652 2 257 263 73 56 chr9 20209472 20209704 -122061740 + L1MEd LINE L1 914 1149 -4970 385 323 64 38 chr9 20209713 20210106 -122061338 + HAL1 LINE L1 1301 1703 -804 216 97 0 0 chr9 20210182 20210213 -122061231 + (TATG)n Simple_repeat Simple_repeat 4 34 0 691 276 48 99 chr9 20210232 20210459 -122060985 + MLT1I LTR MaLR 28 228 -181 368 288 163 0 chr9 20210459 20210619 -122060825 + MER5A DNA MER1_type 4 189 0 691 276 48 99 chr9 20210619 20210786 -122060658 + MLT1I LTR MaLR 228 402 -7 1060 224 37 58 chr9 20210798 20211093 -122060351 + MLT1E2 LTR MaLR 1 289 -337 430 241 45 22 chr9 20211558 20211695 -122059749 - L1ME LINE L1 -577 5572 5436 * 449 298 152 3 chr9 20211693 20211982 -122059462 - L1ME LINE L1 -2325 3804 3473 21 0 0 0 chr9 20211987 20212008 -122059436 + AT_rich Low_complexity Low_complexity 1 21 0 804 228 141 0 chr9 20212017 20212223 -122059221 + MIR SINE MIR 2 236 -26 914 277 136 23 chr9 20212479 20213364 -122058080 - L1ME LINE L1 -2919 3210 2226 21 36 0 0 chr9 20213364 20213392 -122058052 + AT_rich Low_complexity Low_complexity 1 28 0 22 70 0 0 chr9 20213469 20213512 -122057932 + AT_rich Low_complexity Low_complexity 1 43 0 303 317 62 57 chr9 20213524 20213872 -122057572 - L1MEc LINE L1 -3987 2168 1832 393 329 37 51 chr9 20213962 20214178 -122057266 - L1MEc LINE L1 -4618 1692 1480 311 289 6 69 chr9 20214348 20214507 -122056937 - HAL1 LINE L1 -899 1608 1460 237 211 18 18 chr9 20214575 20214632 -122056812 - L1MEc LINE L1 -4877 1242 1186 462 318 52 47 chr9 20214654 20215189 -122056255 - L1MEc LINE L1 -5025 1094 557 1970 181 24 3 chr9 20215385 20215767 -122055677 - L1MC1 LINE L1 -11 6322 5933 300 309 85 58 chr9 20215782 20216158 -122055286 - L1MEc LINE L1 -5732 387 2 185 241 123 118 chr9 20216216 20216419 -122055025 - L2 LINE L2 -99 3173 2970 387 21 0 0 chr9 20216627 20216675 -122054769 + L1PA6 LINE L1 6102 6149 -5 30 27 0 0 chr9 20217476 20217513 -122053931 + AT_rich Low_complexity Low_complexity 1 37 0 31510 107 12 59 chr9 20218696 20225151 -122046293 - L1PA7 LINE L1 -15 6139 1 22 0 0 0 chr9 20226235 20226257 -122045187 + AT_rich Low_complexity Low_complexity 1 22 0 185 272 174 11 chr9 20226412 20226504 -122044940 + L2 LINE L2 3139 3245 -27 792 289 34 78 chr9 20226957 20227443 -122044001 - L2 LINE L2 -2 3270 2818 755 232 186 65 chr9 20227450 20227644 -122043800 - L2 LINE L2 -616 2698 2529 1089 177 0 16 chr9 20227644 20227836 -122043608 + MER5A DNA MER1_type 1 189 0 755 232 186 65 chr9 20227836 20227854 -122043590 - L2 LINE L2 -785 2529 2515 1937 140 31 3 chr9 20227854 20228146 -122043298 + AluSx SINE Alu 1 300 -12 755 232 186 65 chr9 20228146 20228302 -122043142 - L2 LINE L2 -799 2515 2284 612 160 0 50 chr9 20228302 20228421 -122043023 - MER44D DNA MER2_type 0 705 593 240 130 182 0 chr9 20228467 20228544 -122042900 - MER44D DNA MER2_type -104 501 411 884 154 6 39 chr9 20228655 20228811 -122042633 - MER44D DNA MER2_type -188 421 1 228 220 0 20 chr9 20228811 20228861 -122042583 - L2 LINE L2 -1029 2285 2237 611 139 35 134 chr9 20230749 20230921 -122040523 + BC200 scRNA scRNA 2 156 -44 413 278 30 0 chr9 20232327 20232460 -122038984 - MER110 LTR ERV1 -28 463 327 2144 119 0 7 chr9 20232659 20232961 -122038483 + AluSx SINE Alu 1 300 -12 276 53 0 0 chr9 20234968 20235006 -122036438 + (TG)n Simple_repeat Simple_repeat 2 39 0 340 364 14 14 chr9 20236099 20236239 -122035205 - MIR3 SINE MIR -65 143 4 244 277 64 21 chr9 20236931 20237025 -122034419 - MIR3 SINE MIR 0 208 111 312 237 0 13 chr9 20237251 20237327 -122034117 - MIR SINE MIR -109 153 79 347 280 11 21 chr9 20237394 20237487 -122033957 - MER5B DNA MER1_type -1 177 86 1925 153 0 0 chr9 20237591 20237885 -122033559 + AluSx SINE Alu 1 294 -18 296 256 58 81 chr9 20237892 20238064 -122033380 + MIR SINE MIR 49 216 -46 194 234 309 21 chr9 20238436 20238530 -122032914 - MIR3 SINE MIR -28 180 60 625 285 86 5 chr9 20238872 20239058 -122032386 + MIR SINE MIR 13 213 -49 3412 5 0 0 chr9 20239060 20239439 -122032005 - L1PA2 LINE L1 -445 5710 5332 3892 20 0 0 chr9 20239442 20239894 -122031550 + L1PA2 LINE L1 5702 6153 -2 21 0 0 0 chr9 20240280 20240301 -122031143 + AT_rich Low_complexity Low_complexity 1 21 0 277 313 60 12 chr9 20240930 20241013 -122030431 - L2 LINE L2 -47 3225 3139 1519 225 38 26 chr9 20241178 20241596 -122029848 - MLT1C LTR MaLR -44 423 1 4116 211 32 35 chr9 20241600 20242550 -122028894 - MLT1C-int LTR MaLR -4 1367 421 1962 159 32 51 chr9 20242554 20242738 -122028706 + THE1B LTR MaLR 1 177 -187 2114 106 0 3 chr9 20242738 20243084 -122028360 + AluY SINE Alu 1 345 0 1962 159 32 51 chr9 20243084 20243269 -122028175 + THE1B LTR MaLR 177 364 0 627 142 0 9 chr9 20243269 20243375 -122028069 + THE1B-int LTR MaLR 1 105 -1475 * 6591 110 8 4 chr9 20243346 20244284 -122027160 + THE1B-int LTR MaLR 640 1580 0 2259 136 28 17 chr9 20244284 20244644 -122026800 + THE1B LTR MaLR 1 364 0 666 229 0 0 chr9 20244651 20244791 -122026653 - MLT1C-int LTR MaLR -958 413 274 1040 209 30 0 chr9 20244792 20244993 -122026451 + MLT2B3 LTR ERVL 1 207 -347 646 191 17 0 chr9 20244994 20245109 -122026335 + MSTD LTR MaLR 241 357 -39 5127 169 5 18 chr9 20245212 20246311 -122025133 + L1P4 LINE L1 4360 5445 -716 * 5582 160 26 1 chr9 20246306 20247769 -122023675 - L1MA4 LINE L1 -59 6241 4745 345 100 0 0 chr9 20247772 20247822 -122023622 + (TA)n Simple_repeat Simple_repeat 2 51 0 1617 139 128 0 chr9 20247822 20248080 -122023364 - AluSx SINE Alu -11 291 1 2454 171 15 4 chr9 20248083 20248562 -122022882 - L1MA4 LINE L1 -1596 4550 4067 40204 41 1 1 chr9 20248663 20253579 -122017865 - L1P LINE L1 -1233 4913 1 356 270 18 9 chr9 20253646 20253757 -122017687 + L3b LINE CR1 1370 1481 -102 422 277 21 21 chr9 20253856 20253997 -122017447 + MIR SINE MIR 66 206 -56 352 290 0 61 chr9 20254184 20254315 -122017129 + 7SK RNA RNA 3 125 -68 31 26 0 0 chr9 20254924 20254962 -122016482 + AT_rich Low_complexity Low_complexity 1 38 0 1798 126 28 0 chr9 20255174 20255428 -122016016 + AluSq SINE Alu 51 311 -2 1920 169 50 0 chr9 20255486 20255829 -122015615 + MER47A DNA MER2_type 7 366 0 762 193 0 15 chr9 20256527 20256662 -122014782 + FLAM_C SINE Alu 1 133 0 2093 131 0 3 chr9 20256977 20257268 -122014176 + AluSx SINE Alu 1 290 -22 368 341 82 0 chr9 20257482 20257617 -122013827 - L2 LINE L2 0 3272 3127 194 109 43 0 chr9 20258654 20258700 -122012744 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 375 23 0 0 chr9 20258838 20258882 -122012562 + (A)n Simple_repeat Simple_repeat 1 44 0 2375 76 7 0 chr9 20259391 20259693 -122011751 + AluY SINE Alu 1 304 -7 2474 54 0 0 chr9 20261016 20261314 -122010130 - AluY SINE Alu -13 298 1 528 285 59 19 chr9 20261756 20262012 -122009432 - L1ME LINE L1 -297 5824 5559 2229 119 0 6 chr9 20262523 20262834 -122008610 + AluSx SINE Alu 1 309 -3 254 235 20 0 chr9 20263104 20263155 -122008289 + MIR3 SINE MIR 106 157 -51 22 80 0 0 chr9 20265170 20265220 -122006224 + AT_rich Low_complexity Low_complexity 1 50 0 211 220 0 20 chr9 20267061 20267111 -122004333 + GA-rich Low_complexity Low_complexity 3 51 0 188 425 0 0 chr9 20267791 20267864 -122003580 + MIR SINE MIR 76 148 -60 40 37 0 0 chr9 20267929 20267983 -122003461 + AT_rich Low_complexity Low_complexity 1 54 0 304 185 0 49 chr9 20268935 20269016 -122002428 - L1ME4a LINE L1 -75 6046 5970 1126 269 0 4 chr9 20270453 20270709 -122000735 + MIR SINE MIR 2 256 -6 396 304 65 18 chr9 20271592 20271760 -121999684 + MIR SINE MIR 53 228 -34 202 250 0 0 chr9 20271780 20271828 -121999616 - MIR SINE MIR -130 132 85 344 254 94 35 chr9 20271852 20272027 -121999417 - MIR SINE MIR -55 207 17 201 312 75 54 chr9 20272901 20272994 -121998450 - MIR3 SINE MIR -100 108 14 245 292 169 0 chr9 20273732 20273821 -121997623 - L2 LINE L2 -5 3267 3164 1786 166 14 56 chr9 20273864 20274220 -121997224 + MER2 DNA MER2_type 1 341 -3 2106 80 47 0 chr9 20274811 20275086 -121996358 + AluY SINE Alu 1 288 -23 289 279 121 6 chr9 20275417 20275582 -121995862 - L1ME4a LINE L1 -3 6118 5935 428 258 47 38 chr9 20275624 20275837 -121995607 - L1ME4a LINE L1 -161 5960 5746 351 44 0 0 chr9 20277230 20277275 -121994169 + (CA)n Simple_repeat Simple_repeat 2 46 0 30 83 0 0 chr9 20277674 20277746 -121993698 + AT_rich Low_complexity Low_complexity 1 72 0 279 283 28 0 chr9 20280014 20280120 -121991324 + (TA)n Simple_repeat Simple_repeat 2 110 0 279 164 0 73 chr9 20280125 20280180 -121991264 - L3 LINE CR1 -97 1480 1430 22 0 0 0 chr9 20285727 20285749 -121985695 + AT_rich Low_complexity Low_complexity 1 22 0 425 234 11 26 chr9 20285925 20286058 -121985386 + MIR SINE MIR 107 236 -26 2080 98 16 26 chr9 20286265 20286571 -121984873 - AluSx SINE Alu -9 303 1 1733 169 3 10 chr9 20288956 20289264 -121982180 - AluJb SINE Alu -6 306 1 6532 199 47 14 chr9 20289375 20291048 -121980396 - L1 LINE L1 -2390 5175 3441 6678 123 7 3 chr9 20291052 20292009 -121979435 - HSMAR1 DNA Mariner 0 1287 327 4178 149 12 0 chr9 20292009 20292740 -121978704 - L1 LINE L1 -1368 4960 4221 2750 197 16 16 chr9 20292739 20293385 -121978059 - L1 LINE L1 -2916 3412 2767 * 2920 260 75 12 chr9 20293484 20294591 -121976853 - L1 LINE L1 -4097 1231 539 1088 306 14 43 chr9 20295048 20295467 -121975977 - L1 LINE L1 -5538 711 305 343 252 19 29 chr9 20295756 20295859 -121975585 + MIR SINE MIR 53 154 -108 370 98 0 0 chr9 20295917 20295968 -121975476 - AluSg/x SINE Alu -113 187 137 390 242 48 32 chr9 20295990 20296114 -121975330 - MIR SINE MIR -31 231 106 320 291 13 13 chr9 20296125 20296204 -121975240 - L2 LINE L2 0 3313 3235 362 296 37 49 chr9 20297600 20297637 -121973807 - MIR3 SINE MIR -28 180 144 195 42 0 0 chr9 20297637 20297661 -121973783 + (TTTTA)n Simple_repeat Simple_repeat 5 28 0 362 296 37 49 chr9 20297661 20297785 -121973659 - MIR3 SINE MIR -64 144 21 247 327 18 36 chr9 20299074 20299184 -121972260 + Charlie8 DNA MER1_type 1 108 -2309 35 0 0 0 chr9 20299184 20299219 -121972225 + AT_rich Low_complexity Low_complexity 1 35 0 1137 61 0 0 chr9 20299283 20299415 -121972029 + AluY SINE Alu 1 132 -179 21 0 0 0 chr9 20299415 20299436 -121972008 + AT_rich Low_complexity Low_complexity 1 21 0 391 264 295 5 chr9 20299679 20299872 -121971572 - MIR SINE MIR -12 250 2 340 166 55 43 chr9 20301098 20301261 -121970183 + (TA)n Simple_repeat Simple_repeat 1 165 0 569 286 62 22 chr9 20302573 20302751 -121968693 - MIR SINE MIR -47 215 31 684 67 0 0 chr9 20302754 20302844 -121968600 + (CTATG)n Simple_repeat Simple_repeat 5 94 0 661 193 56 0 chr9 20303096 20303257 -121968187 - L1MB2 LINE L1 -1 6170 6001 2213 90 28 18 chr9 20303287 20303812 -121967632 - LTR10E LTR ERV1 -43 590 3 2176 175 28 13 chr9 20303814 20304278 -121967166 - L1MB2 LINE L1 -172 6008 5538 198 0 0 0 chr9 20306975 20306997 -121964447 + (TTA)n Simple_repeat Simple_repeat 3 24 0 3135 56 0 0 chr9 20306998 20307390 -121964054 - L1PA4 LINE L1 -19 6136 5745 191 268 106 65 chr9 20309222 20309345 -121962099 - MIR SINE MIR -26 236 109 328 229 121 0 chr9 20311832 20311915 -121959529 - L2 LINE L2 0 3313 3221 5693 107 13 27 chr9 20311940 20313304 -121958140 + L1PA12 LINE L1 4799 6164 -4 425 291 167 24 chr9 20313308 20313583 -121957861 - L2 LINE L2 -221 3092 2783 227 397 50 7 chr9 20313771 20313912 -121957532 + MIR SINE MIR 46 192 -70 304 293 50 2 chr9 20314967 20315063 -121956381 + MIR SINE MIR 38 136 -72 345 318 31 31 chr9 20315149 20315344 -121956100 + MER117 DNA MER1_type 3 197 0 195 69 0 0 chr9 20315873 20315902 -121955542 + (T)n Simple_repeat Simple_repeat 1 29 0 40886 35 21 1 chr9 20316445 20322476 -121948968 + L1PA3 LINE L1 2 6155 0 23 0 0 0 chr9 20322476 20322499 -121948945 + AT_rich Low_complexity Low_complexity 1 23 0 5411 146 43 8 chr9 20322586 20324557 -121946887 + L1MA8 LINE L1 4249 6286 -5 322 338 62 31 chr9 20325324 20325484 -121945960 + MIR SINE MIR 18 153 -55 363 343 146 27 chr9 20325619 20326311 -121945133 - L2 LINE L2 -217 3055 2280 26 64 0 0 chr9 20327197 20327244 -121944200 + AT_rich Low_complexity Low_complexity 1 47 0 259 333 9 9 chr9 20330449 20330560 -121940884 + GA-rich Low_complexity Low_complexity 5 115 0 344 118 15 0 chr9 20331937 20332005 -121939439 + (TA)n Simple_repeat Simple_repeat 1 69 0 2244 105 10 3 chr9 20332005 20332299 -121939145 - AluSg SINE Alu -14 296 1 1496 165 75 0 chr9 20332309 20332575 -121938869 - AluJb SINE Alu -26 286 1 422 256 44 44 chr9 20332732 20332892 -121938552 + MIR SINE MIR 97 256 -6 2041 114 7 24 chr9 20333246 20333544 -121937900 - AluSg SINE Alu -16 294 2 406 297 20 0 chr9 20334158 20334259 -121937185 - L2 LINE L2 -5 3267 3165 25 0 0 0 chr9 20335341 20335366 -121936078 + AT_rich Low_complexity Low_complexity 1 25 0 318 270 135 9 chr9 20335583 20335694 -121935750 + L2 LINE L2 2394 2518 -796 596 264 0 0 chr9 20335702 20335850 -121935594 + HsTC2 DNA Tc2 1 148 -1750 * 837 208 39 26 chr9 20335843 20336074 -121935370 + HsTC2 DNA Tc2 1261 1494 -404 2787 264 26 16 chr9 20336074 20336912 -121934532 + L1MC/D LINE L1 36 882 -5514 5019 243 39 17 chr9 20336976 20337831 -121933613 + L1MC/D LINE L1 3579 4414 -1882 921 193 23 29 chr9 20337831 20338002 -121933442 + FAM SINE Alu 1 170 -5 5019 243 39 17 chr9 20338002 20338978 -121932466 + L1MC/D LINE L1 4414 5454 -842 1256 211 106 81 chr9 20338978 20339471 -121931973 + MLT1D LTR MaLR 1 505 0 5019 243 39 17 chr9 20339471 20339574 -121931870 + L1MC/D LINE L1 5454 5553 -743 1814 162 0 21 chr9 20339574 20340050 -121931394 + AluJb SINE Alu 1 470 0 840 311 157 25 chr9 20340064 20340721 -121930723 + L2 LINE L2 2532 3309 -4 24 0 0 0 chr9 20342650 20342674 -121928770 + AT_rich Low_complexity Low_complexity 1 24 0 699 279 67 0 chr9 20343386 20343594 -121927850 + MIR SINE MIR 19 240 -22 2120 129 10 6 chr9 20343659 20343970 -121927474 + AluSx SINE Alu 1 312 0 428 297 0 16 chr9 20345054 20345182 -121926262 + L2 LINE L2 3187 3312 -1 396 0 0 0 chr9 20345253 20345297 -121926147 + (TG)n Simple_repeat Simple_repeat 1 44 0 257 228 268 8 chr9 20345368 20345491 -121925953 - MIR SINE MIR -43 219 65 460 290 74 68 chr9 20346416 20346726 -121924718 - L2 LINE L2 -16 3297 2986 207 0 0 0 chr9 20346815 20346838 -121924606 + (A)n Simple_repeat Simple_repeat 1 23 0 468 272 73 7 chr9 20347720 20347856 -121923588 + L2 LINE L2 2934 3078 -194 662 239 190 81 chr9 20347895 20348338 -121923106 + MLT1J LTR MaLR 1 491 -20 213 238 0 0 chr9 20348585 20348627 -121922817 + (TATG)n Simple_repeat Simple_repeat 2 43 0 1640 167 8 0 chr9 20350530 20350788 -121920656 + AluSq SINE Alu 2 261 -52 234 0 0 0 chr9 20351084 20351110 -121920334 + (T)n Simple_repeat Simple_repeat 1 26 0 43588 34 24 1 chr9 20351653 20357709 -121913735 + L1PA3 LINE L1 2 6155 0 1861 148 3 57 chr9 20359746 20360077 -121911367 - AluSq SINE Alu 0 313 1 197 303 76 0 chr9 20360534 20360600 -121910844 - L3b LINE CR1 -88 1495 1425 638 301 40 10 chr9 20360649 20360848 -121910596 + MIR SINE MIR 58 262 0 2140 106 30 13 chr9 20360915 20361216 -121910228 + AluSx SINE Alu 1 306 -6 405 295 83 13 chr9 20363476 20363632 -121907812 + MIR3 SINE MIR 35 201 -7 277 343 0 0 chr9 20365053 20365126 -121906318 + L2 LINE L2 3200 3272 0 2454 74 0 0 chr9 20365323 20365619 -121905825 - AluY SINE Alu -15 296 1 310 223 0 64 chr9 20366165 20366259 -121905185 - HAL1b LINE L1 -91 1257 1170 251 283 43 11 chr9 20366395 20366487 -121904957 + MIR SINE MIR 61 155 -107 1766 162 3 30 chr9 20366636 20366938 -121904506 + AluJb SINE Alu 3 296 -16 2072 130 0 0 chr9 20368211 20368545 -121902899 + AluSx SINE Alu 1 334 0 293 335 112 23 chr9 20368942 20369353 -121902091 - L2 LINE L2 -78 3194 2681 232 242 0 16 chr9 20369614 20369676 -121901768 + MIR3 SINE MIR 145 205 -3 350 222 89 22 chr9 20370042 20370132 -121901312 - L2 LINE L2 -5 3267 3172 380 258 79 53 chr9 20371654 20371694 -121899750 + MIR SINE MIR 55 92 -170 2143 131 52 120 chr9 20371694 20371764 -121899680 - MSTA LTR MaLR 0 428 355 1713 149 4 0 chr9 20371764 20372012 -121899432 + AluJb SINE Alu 3 251 -61 2143 131 52 120 chr9 20372012 20372400 -121899044 - MSTA LTR MaLR -73 355 1 380 258 79 53 chr9 20372400 20372549 -121898895 + MIR SINE MIR 92 249 -13 195 184 0 53 chr9 20373088 20373164 -121898280 + GA-rich Low_complexity Low_complexity 1 72 0 454 325 94 9 chr9 20373258 20373470 -121897974 - MIR SINE MIR -2 260 31 196 256 81 47 chr9 20373551 20373637 -121897807 - L2 LINE L2 -38 3275 3187 464 281 176 10 chr9 20374427 20374626 -121896818 + MIR SINE MIR 19 250 -12 211 265 143 118 chr9 20374893 20375138 -121896306 - L2 LINE L2 -10 3262 3012 817 125 0 0 chr9 20376152 20376264 -121895180 - AluJb SINE Alu 0 312 201 21 0 0 0 chr9 20376306 20376327 -121895117 + AT_rich Low_complexity Low_complexity 1 21 0 2438 98 0 0 chr9 20377450 20377757 -121893687 + AluSp SINE Alu 1 307 -6 196 332 33 10 chr9 20378116 20378216 -121893228 - MIR SINE MIR -48 160 59 897 225 38 10 chr9 20378279 20378488 -121892956 + MIR SINE MIR 12 226 -36 946 226 77 14 chr9 20379390 20379611 -121891833 + MIR SINE MIR 28 262 0 357 259 48 88 chr9 20379611 20379758 -121891686 - MIR SINE MIR -100 162 22 314 141 0 16 chr9 20380282 20380346 -121891098 + (TG)n Simple_repeat Simple_repeat 2 64 0 2165 121 3 10 chr9 20380876 20381190 -121890254 - AluSx SINE Alu 0 312 1 500 374 116 14 chr9 20381269 20381563 -121889881 + L2 LINE L2 2949 3272 0 686 285 115 12 chr9 20381977 20382230 -121889214 - MLT1B LTR MaLR 0 467 189 1072 161 24 29 chr9 20382458 20382663 -121888781 - MLT1B LTR MaLR -186 204 1 301 269 77 39 chr9 20384421 20384551 -121886893 + MIR SINE MIR 88 222 -40 188 0 0 0 chr9 20384925 20384948 -121886496 - L2 LINE L2 -7 3265 3243 619 304 84 17 chr9 20384966 20385203 -121886241 - MIR SINE MIR -1 261 9 4561 216 83 9 chr9 20385209 20386284 -121885160 - L1MC4 LINE L1 -431 7611 6458 191 333 10 42 chr9 20386531 20386627 -121884817 - L2 LINE L2 -560 2754 2662 21 0 0 0 chr9 20387188 20387209 -121884235 + AT_rich Low_complexity Low_complexity 1 21 0 576 245 97 7 chr9 20387579 20387734 -121883710 + MIR SINE MIR 35 203 -59 404 286 75 12 chr9 20387943 20388104 -121883340 + MIR SINE MIR 92 262 0 931 290 38 9 chr9 20388716 20389033 -121882411 - MER46C DNA MER2_type -6 332 7 431 337 98 62 chr9 20389128 20389182 -121882262 - L2 LINE L2 -22 3250 3199 2202 190 53 22 chr9 20389182 20389635 -121881809 - MLT1C LTR MaLR 0 467 1 431 337 98 62 chr9 20389635 20389856 -121881588 - L2 LINE L2 -73 3199 2965 1790 203 90 15 chr9 20390555 20391022 -121880422 - L1ME3A LINE L1 -5 6165 5664 2065 215 108 21 chr9 20391043 20391560 -121879884 - MLT1F1 LTR MaLR 0 567 6 588 266 53 39 chr9 20391736 20391943 -121879501 + MIR SINE MIR 1 210 -52 1103 192 56 23 chr9 20394153 20394367 -121877077 + MER58A DNA MER1_type 1 221 -3 316 167 0 0 chr9 20394623 20394671 -121876773 - MER94 DNA DNA -83 51 4 238 261 29 14 chr9 20395056 20395125 -121876319 - MIR SINE MIR -77 185 116 300 305 183 0 chr9 20395205 20395336 -121876108 - MIR3 SINE MIR -26 182 28 820 194 5 57 chr9 20395770 20395887 -121875557 + L1MB8 LINE L1 5977 6080 -98 1736 155 28 7 chr9 20395887 20396178 -121875266 - AluJo SINE Alu -15 297 1 820 194 5 57 chr9 20396178 20396271 -121875173 + L1MB8 LINE L1 6080 6176 -2 3519 117 35 8 chr9 20396279 20396794 -121874650 + L1PA14 LINE L1 5631 6159 -2 399 210 40 20 chr9 20396808 20396908 -121874536 + L1MB7 LINE L1 6071 6172 -12 2372 111 0 0 chr9 20397769 20398076 -121873368 - AluSq SINE Alu -4 309 3 963 282 16 0 chr9 20399688 20399943 -121871501 - MIR SINE MIR 0 262 4 650 266 48 19 chr9 20400341 20400558 -121870886 - MIR SINE MIR -11 251 31 303 286 175 32 chr9 20401821 20401975 -121869469 + MIR3 SINE MIR 8 183 -25 235 315 120 37 chr9 20402521 20402629 -121868815 + L2 LINE L2 3192 3308 -5 1862 168 0 25 chr9 20403235 20403550 -121867894 + AluSx SINE Alu 1 307 -5 1457 178 16 0 chr9 20403742 20403995 -121867449 - AluJo SINE Alu 0 312 56 218 392 10 10 chr9 20406562 20406659 -121864785 - MIR3 SINE MIR -101 107 11 281 232 110 50 chr9 20407857 20407988 -121863456 + MIR SINE MIR 36 184 -62 1117 180 34 56 chr9 20408693 20408960 -121862484 + MIR SINE MIR 1 261 -1 218 315 198 0 chr9 20409572 20409683 -121861761 - MIR SINE MIR -71 191 59 763 181 84 101 chr9 20410356 20410583 -121860861 + MER58A DNA MER1_type 2 224 0 336 266 108 36 chr9 20411680 20411819 -121859625 - MIR SINE MIR -104 158 10 512 172 172 108 chr9 20412962 20413001 -121858443 + MIR SINE MIR 37 72 -190 2220 98 0 3 chr9 20413001 20413288 -121858156 - AluSc SINE Alu -18 291 6 512 172 172 108 chr9 20413288 20413451 -121857993 + MIR SINE MIR 72 252 -10 205 200 0 0 chr9 20413767 20413807 -121857637 + (TTTA)n Simple_repeat Simple_repeat 3 42 0 259 268 114 82 chr9 20413992 20414298 -121857146 - L2 LINE L2 -338 2976 2661 689 169 66 0 chr9 20414298 20414434 -121857010 - MER58C DNA MER1_type 0 215 71 446 169 12 12 chr9 20414450 20414533 -121856911 + MIR SINE MIR 45 127 -135 284 295 102 42 chr9 20414686 20414852 -121856592 + MER5A DNA MER1_type 3 178 -11 732 314 104 21 chr9 20415049 20415579 -121855865 + L2 LINE L2 2609 3192 -121 291 309 280 16 chr9 20415573 20415816 -121855628 - L2 LINE L2 -1 3312 3006 * 183 324 120 37 chr9 20415818 20415926 -121855518 + L2 LINE L2 3156 3272 0 357 290 89 0 chr9 20415969 20416093 -121855351 + L2 LINE L2 3137 3271 -1 249 253 11 35 chr9 20417184 20417271 -121854173 - MER103 DNA DNA -1 165 81 276 320 10 0 chr9 20417867 20417964 -121853480 - MIR3 SINE MIR -24 184 87 451 272 118 35 chr9 20418583 20418811 -121852633 + MIR SINE MIR 16 262 0 245 280 140 47 chr9 20418955 20419148 -121852296 + MIR SINE MIR 31 241 -21 376 289 163 0 chr9 20419352 20419518 -121851926 + MIR SINE MIR 58 250 -12 21 57 0 0 chr9 20420945 20420980 -121850464 + AT_rich Low_complexity Low_complexity 1 35 0 231 230 70 110 chr9 20421067 20421167 -121850277 - MIR SINE MIR -86 176 81 187 337 43 11 chr9 20421842 20421934 -121849510 + L2 LINE L2 3215 3309 -4 858 245 95 126 chr9 20422319 20422682 -121848762 + L2 LINE L2 2220 2558 -756 2247 155 5 37 chr9 20422682 20423057 -121848387 + MLT1A1 LTR MaLR 1 363 -2 858 245 95 126 chr9 20423057 20423314 -121848130 + L2 LINE L2 2558 2821 -493 243 234 39 52 chr9 20423362 20423439 -121848005 - L2 LINE L2 0 3313 3238 816 290 128 32 chr9 20423458 20423834 -121847610 + L2 LINE L2 2826 3237 -76 240 388 41 6 chr9 20424892 20425062 -121846382 + L2 LINE L2 2860 3035 -237 7253 126 34 10 chr9 20425062 20425622 -121845822 + L1MA1 LINE L1 4129 4674 -1628 231 36 0 0 chr9 20425622 20425650 -121845794 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 7253 126 34 10 chr9 20425650 20427212 -121844232 + L1MA1 LINE L1 4674 6300 -2 418 278 78 9 chr9 20427387 20427502 -121843942 + L2 LINE L2 3148 3270 -2 509 314 124 23 chr9 20428496 20428754 -121842690 - L2 LINE L2 0 3272 2989 240 200 33 125 chr9 20429069 20429189 -121842255 - MER103 DNA DNA -2 164 56 234 249 28 77 chr9 20429326 20429507 -121841937 + (TTTG)n Simple_repeat Simple_repeat 1 172 0 2291 192 72 11 chr9 20430904 20431379 -121840065 + MLT1D LTR MaLR 2 505 0 565 232 28 14 chr9 20431651 20431793 -121839651 + MIR SINE MIR 96 239 -23 234 0 0 0 chr9 20432401 20432427 -121839017 + (GGA)n Simple_repeat Simple_repeat 2 27 0 1482 129 9 0 chr9 20433421 20433603 -121837841 - AluSg/x SINE Alu -3 307 121 423 0 0 0 chr9 20433603 20433650 -121837794 + (TA)n Simple_repeat Simple_repeat 1 47 0 1482 129 9 0 chr9 20433650 20433684 -121837760 - AluSg/x SINE Alu -189 121 89 257 230 10 50 chr9 20433694 20433794 -121837650 + L1ME4a LINE L1 5984 6079 -42 216 214 0 0 chr9 20434497 20434539 -121836905 + MER5B DNA MER1_type 2 43 -135 611 199 8 15 chr9 20434585 20434716 -121836728 - MER5B DNA MER1_type -48 130 1 1382 248 117 30 chr9 20435050 20435513 -121835931 - MLT1J LTR MaLR -4 507 5 252 0 0 0 chr9 20437317 20437345 -121834099 + (T)n Simple_repeat Simple_repeat 1 28 0 791 239 45 45 chr9 20437958 20438201 -121833243 + MIR SINE MIR 1 243 -19 186 324 127 14 chr9 20438912 20438983 -121832461 - MIR3 SINE MIR -17 191 113 256 297 27 14 chr9 20439165 20439239 -121832205 - MIR3 SINE MIR -49 159 85 230 83 0 0 chr9 20440109 20440145 -121831299 - L1MA10 LINE L1 -1 6333 6298 * 235 128 0 0 chr9 20440116 20440155 -121831289 - L1MB7 LINE L1 -10 6174 6136 * 2422 191 19 13 chr9 20440153 20440624 -121830820 - L1MB7 LINE L1 -303 5881 5408 191 374 66 0 chr9 20440658 20440749 -121830695 + L2 LINE L2 3144 3240 -32 216 281 146 42 chr9 20440898 20440994 -121830450 - MIR SINE MIR -134 128 23 203 313 16 31 chr9 20442122 20442250 -121829194 + CT-rich Low_complexity Low_complexity 2 127 0 297 247 99 0 chr9 20443068 20443149 -121828295 - MIR3 SINE MIR -9 199 111 1510 166 28 3 chr9 20443300 20443583 -121827861 - L1MA4 LINE L1 -11 6289 6000 23 0 0 0 chr9 20444222 20444245 -121827199 + AT_rich Low_complexity Low_complexity 1 23 0 276 242 16 0 chr9 20444872 20444934 -121826510 + MIR SINE MIR 13 75 -187 6626 32 1 1 chr9 20444943 20445714 -121825730 - L1PA3 LINE L1 -3 6152 5382 231 275 220 0 chr9 20445767 20445858 -121825586 + MIR SINE MIR 41 151 -111 2516 102 17 14 chr9 20445999 20446351 -121825093 - THE1A LTR MaLR 0 355 3 8665 83 25 20 chr9 20446353 20447443 -121824001 - THE1A-int LTR MaLR 0 1580 482 2431 63 13 0 chr9 20447443 20447743 -121823701 - L1PA7 LINE L1 0 6154 5851 8665 83 25 20 chr9 20447743 20447830 -121823614 - THE1A-int LTR MaLR -1098 482 397 5057 82 1 59 chr9 20448135 20448865 -121822579 - LTR12 LTR ERV1 0 688 1 808 228 19 102 chr9 20449556 20449881 -121821563 + L3 LINE CR1 468 765 -812 1305 145 13 31 chr9 20449886 20450114 -121821330 + AluJb SINE Alu 7 230 -82 936 303 150 22 chr9 20450235 20450832 -121820612 + L3 LINE CR1 754 1458 -119 1829 147 10 10 chr9 20450832 20451139 -121820305 - AluSx SINE Alu -5 307 1 936 303 150 22 chr9 20451139 20451255 -121820189 + L3 LINE CR1 1458 1558 -19 2379 99 3 0 chr9 20451452 20451756 -121819688 - AluSp SINE Alu -7 306 2 1898 188 0 0 chr9 20452390 20452699 -121818745 - AluJb SINE Alu -3 309 1 316 263 94 64 chr9 20452880 20453051 -121818393 - LTR67 LTR ERVL 0 557 382 823 208 39 6 chr9 20453233 20453411 -121818033 - MLT1B LTR MaLR -206 184 1 842 103 0 0 chr9 20453611 20453718 -121817726 - AluSp/q SINE Alu -19 294 188 1572 138 5 0 chr9 20453718 20453936 -121817508 - AluSp SINE Alu -94 219 1 1804 65 0 0 chr9 20453943 20454172 -121817272 - L1PA8 LINE L1 -4 6168 5940 238 250 77 0 chr9 20455503 20455607 -121815837 + MIR3 SINE MIR 91 202 -6 2051 148 3 0 chr9 20456634 20456938 -121814506 + AluSq SINE Alu 1 305 -8 363 239 99 24 chr9 20456943 20457113 -121814331 - L1MC5 LINE L1 -44 7917 7726 1743 174 101 0 chr9 20457113 20457429 -121814015 - MER7A DNA MER2_type 0 346 1 363 239 99 24 chr9 20457429 20457471 -121813973 - L1MC5 LINE L1 -235 7726 7689 * 1484 195 46 20 chr9 20457436 20457785 -121813659 + L1 LINE L1 3890 4247 -1899 13091 150 23 24 chr9 20457813 20460093 -121811351 + L1P LINE L1 11 2288 -3858 1464 197 34 50 chr9 20460113 20461420 -121810024 + SVA Other Other 432 866 -520 27 0 0 0 chr9 20461530 20461557 -121809887 + AT_rich Low_complexity Low_complexity 1 27 0 22929 74 28 5 chr9 20461557 20462221 -121809223 + L1PA6 LINE L1 2273 2920 -3234 2344 82 10 0 chr9 20462221 20462514 -121808930 + AluY SINE Alu 1 296 -15 22929 74 28 5 chr9 20462514 20465717 -121805727 + L1PA6 LINE L1 2920 6153 -1 1921 204 48 20 chr9 20465743 20466239 -121805205 + L1 LINE L1 4256 4765 -1381 837 179 0 0 chr9 20467006 20467140 -121804304 - FRAM SINE Alu -37 139 6 374 280 93 20 chr9 20468030 20468180 -121803264 + MIR SINE MIR 90 250 -12 1855 155 3 10 chr9 20468822 20469126 -121802318 - AluSx SINE Alu -9 303 2 380 326 27 74 chr9 20469247 20469505 -121801939 + MIR SINE MIR 5 250 -12 1402 131 0 0 chr9 20469763 20469962 -121801482 + AluSg/x SINE Alu 104 302 -10 2333 92 0 3 chr9 20469972 20470267 -121801177 + AluSc SINE Alu 7 300 -9 235 100 40 0 chr9 20470268 20470318 -121801126 + L1MB3 LINE L1 6132 6183 0 1313 210 30 88 chr9 20470550 20470874 -121800570 + MER58B DNA MER1_type 1 303 -2117 1891 138 13 33 chr9 20470874 20471178 -121800266 - AluJb SINE Alu -14 298 1 1313 210 30 88 chr9 20471178 20471215 -121800229 + MER58B DNA MER1_type 303 341 0 259 268 0 28 chr9 20471469 20471540 -121799904 + MLT1J LTR MaLR 1 69 -442 27 0 0 0 chr9 20471950 20471977 -121799467 + AT_rich Low_complexity Low_complexity 1 27 0 3555 119 24 53 chr9 20472255 20472874 -121798570 + Tigger1 DNA MER2_type 1320 1920 -498 1787 133 83 42 chr9 20472874 20473234 -121798210 + THE1C LTR MaLR 1 375 0 207 284 138 17 chr9 20473267 20473383 -121798061 + L2 LINE L2 2948 3077 -195 246 256 93 2 chr9 20474454 20474567 -121796877 + MIR SINE MIR 17 137 -71 459 283 56 17 chr9 20475056 20475236 -121796208 - MER5A DNA MER1_type 0 189 3 1439 198 0 26 chr9 20475304 20475438 -121796006 + AluJo SINE Alu 3 128 -184 2124 143 3 0 chr9 20475438 20475745 -121795699 + AluSx SINE Alu 1 308 -4 1439 198 0 26 chr9 20475745 20475883 -121795561 + AluJo SINE Alu 128 268 -44 36 0 0 0 chr9 20476566 20476602 -121794842 + AT_rich Low_complexity Low_complexity 1 36 0 2132 108 7 3 chr9 20476603 20476900 -121794544 - AluSq SINE Alu -13 300 3 290 250 162 40 chr9 20477191 20477234 -121794210 + Charlie8 DNA MER1_type 78 114 -2303 2446 98 0 0 chr9 20477234 20477540 -121793904 + AluSx SINE Alu 1 306 -6 290 250 162 40 chr9 20477540 20477644 -121793800 + Charlie8 DNA MER1_type 114 243 -2174 326 0 0 0 chr9 20477883 20477918 -121793526 + U2 snRNA snRNA 1 35 -153 2491 75 0 0 chr9 20478938 20479231 -121792213 + AluSc SINE Alu 2 294 -15 342 252 199 8 chr9 20480088 20480219 -121791225 + MIR SINE MIR 106 261 -1 1960 156 0 7 chr9 20480952 20481254 -121790190 + AluJb SINE Alu 1 300 -12 225 0 0 0 chr9 20482030 20482055 -121789389 + (CA)n Simple_repeat Simple_repeat 1 25 0 266 312 35 28 chr9 20482440 20482581 -121788863 - MIR SINE MIR -55 207 66 658 226 15 15 chr9 20482896 20483029 -121788415 + AluJb SINE Alu 135 267 -45 2945 102 41 12 chr9 20483046 20483449 -121787995 + MER1A DNA MER1_type 1 391 -2311 1935 140 0 11 chr9 20483449 20483728 -121787716 + AluSx SINE Alu 1 276 -36 3638 70 0 6 chr9 20483728 20484199 -121787245 + L1PA6 LINE L1 5681 6148 -6 1702 148 33 13 chr9 20484397 20484700 -121786744 + AluSx SINE Alu 2 310 -2 366 199 320 17 chr9 20484741 20484922 -121786522 + MIR SINE MIR 9 244 -18 619 261 48 34 chr9 20484997 20485070 -121786374 - MIR SINE MIR -27 235 165 1764 167 13 30 chr9 20485070 20485375 -121786069 - AluJo SINE Alu -12 300 1 619 261 48 34 chr9 20485375 20485508 -121785936 - MIR SINE MIR -97 165 26 429 298 95 0 chr9 20487916 20488084 -121783360 - MIR SINE MIR -78 184 1 2135 101 31 0 chr9 20488218 20488505 -121782939 - AluSx SINE Alu -16 296 1 237 150 350 0 chr9 20488686 20488746 -121782698 - HAL1 LINE L1 -541 1966 1886 1232 239 172 29 chr9 20488756 20489303 -121782141 - HAL1 LINE L1 -688 1819 1195 1154 137 0 16 chr9 20489306 20489474 -121781970 - AluSg/x SINE Alu -12 297 131 2135 136 0 0 chr9 20489474 20489783 -121781661 - AluSx SINE Alu -3 309 1 1154 137 0 16 chr9 20489783 20489797 -121781647 - AluSg/x SINE Alu -178 131 118 914 144 11 58 chr9 20489803 20489967 -121781477 - AluJo SINE Alu -14 298 143 2354 81 3 23 chr9 20489967 20490274 -121781170 - AluSp SINE Alu -12 301 1 914 144 11 58 chr9 20490274 20490297 -121781147 - AluJo SINE Alu -169 143 120 2120 224 108 108 chr9 20490305 20490584 -121780860 - HAL1 LINE L1 -1326 1181 903 1497 82 34 5 chr9 20490584 20490792 -121780652 - AluSp SINE Alu -10 303 90 2120 224 108 108 chr9 20490792 20491340 -121780104 - HAL1 LINE L1 -1604 903 356 3016 6 0 0 chr9 20491340 20491658 -121779786 - AluYb8 SINE Alu 0 318 1 2120 224 108 108 chr9 20491658 20491815 -121779629 - HAL1 LINE L1 -2151 356 200 2422 52 3 3 chr9 20491815 20492102 -121779342 - AluY SINE Alu -21 290 4 2120 224 108 108 chr9 20492102 20492285 -121779159 - HAL1 LINE L1 -2306 201 12 7305 128 9 16 chr9 20492383 20492536 -121778908 - L1MA2 LINE L1 0 6304 6151 2139 118 21 0 chr9 20492536 20492824 -121778620 - AluSx SINE Alu -18 294 1 7305 128 9 16 chr9 20492824 20492907 -121778537 - L1MA2 LINE L1 -153 6151 6069 1927 159 0 3 chr9 20492907 20493202 -121778242 - AluJb SINE Alu -18 294 1 7305 128 9 16 chr9 20493202 20493501 -121777943 - L1MA2 LINE L1 -235 6069 5769 1866 169 0 10 chr9 20493501 20493797 -121777647 - AluJb SINE Alu -19 293 1 2181 128 3 0 chr9 20493800 20494106 -121777338 - AluSp SINE Alu -6 307 1 7305 128 9 16 chr9 20494106 20495723 -121775721 - L1MA2 LINE L1 -537 5767 4161 761 257 67 4 chr9 20495746 20496015 -121775429 - L1ME1 LINE L1 0 6178 5872 1785 153 0 4 chr9 20496022 20496290 -121775154 - AluSx SINE Alu -9 303 37 2223 110 0 0 chr9 20496658 20496949 -121774495 + AluSq SINE Alu 1 291 -22 560 184 0 0 chr9 20497427 20497530 -121773914 - L1M4 LINE L1 -2298 3848 3746 471 99 0 0 chr9 20497530 20497601 -121773843 - Alu SINE Alu -8 304 234 23 0 0 0 chr9 20497835 20497858 -121773586 + AT_rich Low_complexity Low_complexity 1 23 0 6755 36 3 0 chr9 20497917 20498727 -121772717 - L1PA3 LINE L1 0 6155 5335 202 275 220 0 chr9 20498743 20498834 -121772610 + MIR SINE MIR 41 151 -111 2377 102 17 14 chr9 20498975 20499327 -121772117 - THE1A LTR MaLR 0 355 3 2926 73 8 5 chr9 20499329 20499710 -121771734 - THE1A-int LTR MaLR 0 1580 1199 2592 86 6 0 chr9 20499810 20500159 -121771285 - THE1A-int LTR MaLR -1229 351 1 2137 108 72 12 chr9 20500159 20500494 -121770950 - THE1A LTR MaLR 0 355 1 461 195 0 0 chr9 20501058 20501140 -121770304 - MER58 DNA MER1_type -2 2418 2337 690 222 102 0 chr9 20501164 20501331 -121770113 - MER58 DNA MER1_type -156 185 2 811 213 46 0 chr9 20501735 20501909 -121769535 + MER5A DNA MER1_type 3 184 -5 247 297 230 0 chr9 20503534 20503682 -121767762 + MIR SINE MIR 74 255 -7 272 217 14 14 chr9 20503805 20503874 -121767570 + MER5B DNA MER1_type 2 70 -108 391 182 104 0 chr9 20503979 20504056 -121767388 - L1MEc LINE L1 -5715 681 597 1946 111 7 4 chr9 20504069 20504348 -121767096 - AluSx SINE Alu -13 299 20 1026 236 138 15 chr9 20504450 20504857 -121766587 - L1MC4 LINE L1 -1119 6923 6467 241 224 118 0 chr9 20506481 20506557 -121764887 + MIR SINE MIR 175 259 -3 191 270 108 0 chr9 20509301 20509375 -121762069 - L2 LINE L2 -5 3267 3186 2271 120 0 0 chr9 20510123 20510424 -121761020 + AluSq SINE Alu 1 301 -12 873 159 0 0 chr9 20510672 20510804 -121760640 + AluJb SINE Alu 1 132 -180 30604 123 21 66 chr9 20510804 20516396 -121755048 + L1P LINE L1 3 5344 -802 6599 50 40 18 chr9 20516396 20516649 -121754795 + L1PA7 LINE L1 5162 5408 -746 2274 126 0 0 chr9 20516649 20516959 -121754485 + AluSp SINE Alu 1 310 -3 6599 50 40 18 chr9 20516959 20517676 -121753768 + L1PA7 LINE L1 5408 6152 -2 980 164 0 34 chr9 20517677 20517854 -121753590 + AluJb SINE Alu 132 302 -10 766 227 21 41 chr9 20517967 20518209 -121753235 - L1ME2 LINE L1 -35 6129 5893 1712 163 7 18 chr9 20518222 20518504 -121752940 - AluJb SINE Alu -16 296 18 2065 135 0 0 chr9 20519228 20519517 -121751927 - AluSq SINE Alu -13 300 12 241 326 22 0 chr9 20520343 20520432 -121751012 - MER117 DNA MER1_type -66 131 41 2002 147 0 0 chr9 20520583 20520875 -121750569 - AluSx SINE Alu -20 292 1 274 264 164 0 chr9 20521593 20521703 -121749741 + MIR3 SINE MIR 68 195 -13 565 297 59 14 chr9 20522016 20522238 -121749206 + MIR SINE MIR 18 249 -13 473 301 57 0 chr9 20522294 20522470 -121748974 - MIR SINE MIR -67 195 10 1852 149 3 36 chr9 20522768 20523077 -121748367 + AluJo SINE Alu 2 300 -12 1263 121 61 103 chr9 20523558 20523802 -121747642 + MER33 DNA MER1_type 1 229 -2356 901 183 55 0 chr9 20523802 20523966 -121747478 - FAM SINE Alu -2 173 1 1263 121 61 103 chr9 20523966 20524051 -121747393 + MER33 DNA MER1_type 229 316 -8 190 337 0 50 chr9 20524279 20524380 -121747064 + MIR3 SINE MIR 107 202 -6 1939 166 0 0 chr9 20524380 20524675 -121746769 + AluJb SINE Alu 1 295 -17 194 306 0 42 chr9 20527431 20527503 -121743941 - L2 LINE L2 -250 3063 2995 1176 196 5 0 chr9 20529550 20529754 -121741690 - AluJo SINE Alu -20 292 88 21 0 0 0 chr9 20531769 20531790 -121739654 + AT_rich Low_complexity Low_complexity 1 21 0 1859 251 90 66 chr9 20532019 20532711 -121738733 - L1ME LINE L1 -5046 1024 303 2350 103 3 0 chr9 20532711 20533022 -121738422 - AluSp SINE Alu -1 312 1 1859 251 90 66 chr9 20533022 20533265 -121738179 - L1ME LINE L1 -5767 303 67 1250 229 45 30 chr9 20537472 20537808 -121733636 + MER58B DNA MER1_type 1 341 0 712 217 152 23 chr9 20537916 20538133 -121733311 - L1ME3A LINE L1 -12 6158 5914 275 279 168 60 chr9 20539341 20539639 -121731805 + L2 LINE L2 2866 3195 -77 432 97 0 0 chr9 20540149 20540211 -121731233 + (CA)n Simple_repeat Simple_repeat 2 63 0 2166 142 58 31 chr9 20540358 20540775 -121730669 + MSTA LTR MaLR 1 428 0 1515 216 30 49 chr9 20541122 20541492 -121729952 - MLT1A1 LTR MaLR -2 363 1 439 290 27 27 chr9 20542878 20543099 -121728345 + L1MB7 LINE L1 22 242 -6300 271 268 25 109 chr9 20543265 20543504 -121727940 + L1MB7 LINE L1 497 715 -5827 2550 244 88 49 chr9 20543622 20543803 -121727641 + L1MB7 LINE L1 716 888 -5756 1485 127 100 63 chr9 20543803 20544102 -121727342 + AluSq SINE Alu 1 310 -3 2550 244 88 49 chr9 20544102 20544943 -121726501 + L1MB7 LINE L1 888 1851 -4793 2426 56 0 3 chr9 20544943 20545252 -121726192 - AluY SINE Alu 0 308 1 2550 244 88 49 chr9 20545252 20545599 -121725845 + L1MB7 LINE L1 1851 2183 -4461 4964 219 58 40 chr9 20545655 20548000 -121723444 + L1MB7 LINE L1 4298 6673 -9 2501 67 3 0 chr9 20548218 20548516 -121722928 + AluSp SINE Alu 1 299 -14 585 279 48 22 chr9 20548913 20549142 -121722302 + MIR SINE MIR 20 254 -8 641 298 66 0 chr9 20549150 20549378 -121722066 + MIR SINE MIR 8 250 -12 314 286 12 0 chr9 20552488 20552572 -121718872 - MIR SINE MIR -87 121 37 455 281 25 59 chr9 20552725 20552963 -121718481 - HAL1 LINE L1 0 2507 2278 2259 69 0 0 chr9 20553240 20553514 -121717930 + AluY SINE Alu 37 310 -1 368 256 163 37 chr9 20553667 20553882 -121717562 + MIR SINE MIR 10 251 -11 23 54 0 0 chr9 20553983 20554020 -121717424 + AT_rich Low_complexity Low_complexity 1 37 0 1965 87 4 15 chr9 20555959 20556224 -121715220 - AluY SINE Alu -7 304 43 693 191 7 7 chr9 20557980 20558116 -121713328 - MER103 DNA DNA 0 166 31 492 218 49 56 chr9 20558147 20558289 -121713155 - MLT1K LTR MaLR -53 535 395 838 290 37 65 chr9 20558316 20558640 -121712804 - MLT1K LTR MaLR -263 325 11 248 240 130 10 chr9 20559032 20559132 -121712312 - MIR SINE MIR -70 192 81 369 43 0 0 chr9 20559356 20559403 -121712041 + (TG)n Simple_repeat Simple_repeat 1 47 0 516 95 0 0 chr9 20560195 20560279 -121711165 + (TCCC)n Simple_repeat Simple_repeat 1 84 0 604 258 87 110 chr9 20560319 20561198 -121710246 - L2 LINE L2 0 3313 2387 26 30 0 0 chr9 20561782 20561815 -121709629 + AT_rich Low_complexity Low_complexity 1 33 0 1081 172 98 130 chr9 20562764 20563141 -121708303 - MLT1A1 LTR MaLR 0 365 1 240 309 73 18 chr9 20563638 20563748 -121707696 + L2 LINE L2 3117 3232 -40 292 269 51 0 chr9 20564124 20564202 -121707242 - Tigger5 DNA MER2_type 0 2323 2242 * 313 304 0 0 chr9 20564192 20564271 -121707173 + Tigger5 DNA MER2_type 2242 2320 -3 * 450 185 0 25 chr9 20564271 20564351 -121707093 - Tigger5 DNA MER2_type -2245 78 1 1313 167 132 21 chr9 20566012 20566293 -121705151 - AluJo SINE Alu 0 312 1 688 144 0 0 chr9 20566523 20566627 -121704817 - AluSg/x SINE Alu -16 296 193 366 217 264 8 chr9 20567459 20567588 -121703856 + MIR SINE MIR 33 194 -68 268 340 0 38 chr9 20572447 20572553 -121698891 + MIR SINE MIR 45 146 -62 986 124 0 0 chr9 20574353 20574498 -121696946 - AluJb SINE Alu 0 312 168 2032 149 10 0 chr9 20574534 20574830 -121696614 - AluSx SINE Alu -13 299 1 1035 179 6 0 chr9 20574884 20575052 -121696392 + FAM SINE Alu 1 169 -6 1077 163 101 53 chr9 20575101 20575328 -121696116 - MER8 DNA MER2_type -1 238 1 756 168 16 0 chr9 20575366 20575491 -121695953 + MER45A DNA AcHobo 52 178 0 370 281 40 53 chr9 20575501 20575729 -121695715 - L1ME3A LINE L1 -114 6056 5832 1929 132 68 7 chr9 20575799 20576094 -121695350 - AluSq SINE Alu 0 313 1 2810 228 133 16 chr9 20576095 20577856 -121693588 - L1MEc LINE L1 -2808 3836 1845 827 180 132 6 chr9 20577870 20578037 -121693407 - MSTB LTR MaLR -54 372 185 9265 153 26 1 chr9 20578087 20580429 -121691015 - L1PA11 LINE L1 0 6876 4461 4106 225 55 51 chr9 20580429 20580818 -121690626 - L1PA11 LINE L1 -4593 2245 1859 2130 109 0 43 chr9 20580818 20581121 -121690323 - AluSg SINE Alu -20 290 1 4106 225 55 51 chr9 20581121 20582584 -121688860 - L1PA11 LINE L1 -4979 1859 2 2045 200 108 0 chr9 20582587 20583077 -121688367 - L1MEc LINE L1 -4788 1858 1316 594 233 264 24 chr9 20583080 20583410 -121688034 - L1MEc LINE L1 -5436 1210 802 299 350 45 16 chr9 20583549 20583795 -121687649 - L1MEc LINE L1 -6282 260 8 442 312 144 50 chr9 20583853 20584587 -121686857 + L2 LINE L2 1812 2614 -700 727 207 41 28 chr9 20584670 20584815 -121686629 - AluJb SINE Alu -31 281 135 184 326 102 27 chr9 20584829 20584976 -121686468 + L2 LINE L2 2709 2866 -448 299 320 204 0 chr9 20585390 20585537 -121685907 + MER5A DNA MER1_type 13 189 0 563 231 173 54 chr9 20586768 20587158 -121684286 + MLT1D LTR MaLR 3 438 -29 230 300 150 7 chr9 20589619 20589759 -121681685 + MIR SINE MIR 91 250 -12 1702 193 16 25 chr9 20592184 20592552 -121678892 + MLT1A1 LTR MaLR 1 365 0 525 152 20 20 chr9 20592606 20592705 -121678739 - AluJo/FRAM SINE Alu -5 307 209 288 250 0 0 chr9 20592705 20592757 -121678687 - AluSx SINE Alu -126 176 125 573 192 0 0 chr9 20592762 20592882 -121678562 + (TA)n Simple_repeat Simple_repeat 1 120 0 909 133 0 8 chr9 20592884 20593012 -121678432 - AluSx SINE Alu -186 127 1 259 241 115 23 chr9 20593067 20593154 -121678290 - MIR3 SINE MIR -33 175 81 225 317 70 21 chr9 20593391 20593533 -121677911 + MLT1H LTR MaLR 29 177 -372 283 183 98 0 chr9 20593533 20593615 -121677829 + L1MB3 LINE L1 4349 4438 -1708 603 172 131 16 chr9 20593616 20593738 -121677706 + MSTC LTR MaLR 1 136 -292 575 107 12 0 chr9 20593830 20593914 -121677530 + MSTC LTR MaLR 310 394 -2 4814 182 45 12 chr9 20593923 20595583 -121675861 + L1MB3 LINE L1 4446 6171 -12 492 262 28 108 chr9 20595583 20595894 -121675550 + MLT1H LTR MaLR 152 549 0 2073 137 13 7 chr9 20596006 20596305 -121675139 - AluJo SINE Alu -11 301 1 14862 125 45 7 chr9 20597239 20599547 -121671897 + Tigger1 DNA MER2_type 1 2395 -23 512 213 186 11 chr9 20599989 20600177 -121671267 + LTR50 LTR ERVL 258 478 -317 17176 150 70 4 chr9 20600195 20602682 -121668762 + L1PB1 LINE L1 1 2323 -4544 276 30 0 0 chr9 20602682 20602715 -121668729 + (CA)n Simple_repeat Simple_repeat 1 33 0 17176 150 70 4 chr9 20602715 20606678 -121664766 + L1PB1 LINE L1 2323 6866 -1 516 127 223 48 chr9 20606687 20606853 -121664591 + LTR50 LTR ERVL 556 750 -45 309 381 6 6 chr9 20607540 20607716 -121663728 - L2 LINE L2 -1153 2161 1986 1362 279 115 54 chr9 20608135 20609083 -121662361 + L1ME LINE L1 10 1015 -5055 467 265 145 51 chr9 20609086 20609459 -121661985 + L1ME LINE L1 1052 1459 -4621 830 319 57 53 chr9 20609464 20609674 -121661770 + L1MEc LINE L1 41 249 -6147 2775 140 35 28 chr9 20609674 20610138 -121661306 - MLT1C LTR MaLR 0 467 1 830 319 57 53 chr9 20610138 20610492 -121660952 + L1MEc LINE L1 249 607 -5789 1192 254 70 16 chr9 20610527 20611015 -121660429 + L1MEc LINE L1 683 1196 -5200 2228 90 3 3 chr9 20611091 20611380 -121660064 + AluSg SINE Alu 1 289 -21 858 285 116 32 chr9 20611850 20612316 -121659128 + MLT1J LTR MaLR 1 505 -6 4135 30 4 0 chr9 20613512 20613972 -121657472 + L1PA4 LINE L1 5691 6152 -3 1098 210 56 9 chr9 20618481 20618695 -121652749 - MER58A DNA MER1_type 0 224 1 675 78 0 48 chr9 20619076 20619179 -121652265 + L1PB3 LINE L1 6057 6154 0 552 341 88 6 chr9 20619213 20619473 -121651971 - L1ME LINE L1 -350 5771 5473 2359 185 88 4 chr9 20619473 20619937 -121651507 + MLT1D LTR MaLR 3 505 0 552 341 88 6 chr9 20619937 20620028 -121651416 - L1ME LINE L1 -648 5473 5391 1567 247 126 25 chr9 20620756 20621752 -121649692 + L1MC4 LINE L1 6459 7728 -314 275 248 41 0 chr9 20621801 20621888 -121649556 + L1MC4 LINE L1 7905 8041 0 2104 125 20 0 chr9 20622259 20622556 -121648888 + AluSx SINE Alu 1 303 -9 186 133 0 0 chr9 20624763 20624793 -121646651 + (TG)n Simple_repeat Simple_repeat 2 31 0 282 56 0 0 chr9 20625090 20625126 -121646318 + (CA)n Simple_repeat Simple_repeat 1 36 0 2561 149 259 14 chr9 20625213 20625797 -121645647 + LTR8A LTR ERV1 1 727 0 183 295 89 27 chr9 20626192 20626304 -121645140 - MIR SINE MIR -56 206 88 852 246 96 17 chr9 20626628 20626868 -121644576 - MIR SINE MIR 0 262 4 4256 163 20 3 chr9 20626923 20627622 -121643822 + MER50 LTR ERV1 1 711 -23 269 321 9 37 chr9 20628012 20628121 -121643323 - MIR SINE MIR 0 262 157 1053 189 35 0 chr9 20630126 20630327 -121641117 + MER58A DNA MER1_type 17 224 0 344 222 120 26 chr9 20630714 20630831 -121640613 - MER5B DNA MER1_type -30 148 21 1112 272 34 68 chr9 20631146 20631696 -121639748 + L2 LINE L2 2783 3313 0 537 347 120 22 chr9 20632173 20632913 -121638531 + L2 LINE L2 2480 3272 0 394 327 10 0 chr9 20632913 20633017 -121638427 + L2 LINE L2 3168 3272 0 45290 38 1 1 chr9 20633832 20639980 -121631464 + L1PA3 LINE L1 8 6152 -3 1260 153 8 168 chr9 20640120 20640472 -121630972 - AluJo SINE Alu -16 296 1 234 0 0 0 chr9 20640475 20640501 -121630943 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 384 22 0 0 chr9 20640611 20640656 -121630788 + (TG)n Simple_repeat Simple_repeat 2 46 0 2342 116 45 25 chr9 20640657 20641012 -121630432 + THE1B LTR MaLR 3 364 0 963 180 16 22 chr9 20641175 20641358 -121630086 - MER58A DNA MER1_type 0 224 43 591 263 124 11 chr9 20641359 20641545 -121629899 + L1ME1 LINE L1 386 592 -5804 1103 261 53 0 chr9 20641546 20641887 -121629557 + L1M4 LINE L1 4777 5135 -1011 * 3172 234 73 36 chr9 20641885 20642792 -121628652 + L1ME1 LINE L1 4194 5066 -1337 5200 121 8 0 chr9 20642792 20643507 -121627937 + L1PA16 LINE L1 5434 6157 -9 3172 234 73 36 chr9 20643507 20644546 -121626898 + L1ME1 LINE L1 5066 6377 -26 5264 138 33 1 chr9 20644605 20645792 -121625652 + L1P4 LINE L1 4429 5645 -518 358 311 50 0 chr9 20646306 20646425 -121625019 + MER117 DNA MER1_type 73 197 0 460 143 101 92 chr9 20648173 20648292 -121623152 - L1MC1 LINE L1 -13 6320 6201 195 315 72 27 chr9 20649514 20649625 -121621819 - MIR SINE MIR -18 244 129 237 275 9 37 chr9 20650262 20650371 -121621073 - L1MC4 LINE L1 -1329 6713 6608 370 297 180 2 chr9 20650383 20650554 -121620890 + MIR3 SINE MIR 5 205 -3 25 0 0 0 chr9 20651831 20651856 -121619588 + AT_rich Low_complexity Low_complexity 1 25 0 398 310 30 0 chr9 20652302 20652402 -121619042 - MIR SINE MIR -139 123 21 677 210 138 33 chr9 20653163 20653439 -121618005 + L1ME3A LINE L1 5860 6164 -6 2500 88 0 0 chr9 20654021 20654326 -121617118 + AluSg SINE Alu 1 305 -5 494 68 27 0 chr9 20654939 20655013 -121616431 + (TTCC)n Simple_repeat Simple_repeat 1 76 0 2121 122 3 3 chr9 20655013 20655309 -121616135 - AluSx SINE Alu -16 296 1 249 292 14 0 chr9 20655423 20655495 -121615949 + GA-rich Low_complexity Low_complexity 4 76 0 425 271 132 7 chr9 20656228 20656372 -121615072 - MIR SINE MIR -17 245 84 1015 224 52 45 chr9 20657406 20657836 -121613608 + MLT1J1 LTR MaLR 1 395 -14 325 309 39 73 chr9 20657905 20658172 -121613272 + L2 LINE L2 2737 2996 -276 2235 121 0 0 chr9 20659545 20659843 -121611601 - AluSx SINE Alu -14 298 1 1918 148 10 3 chr9 20660216 20660507 -121610937 - AluJb SINE Alu -19 293 1 228 259 111 12 chr9 20661660 20661741 -121609703 + L2 LINE L2 3179 3267 -46 747 130 0 0 chr9 20662104 20662227 -121609217 + L1MA5A LINE L1 6165 6287 -10 28 0 0 0 chr9 20662227 20662255 -121609189 + AT_rich Low_complexity Low_complexity 1 28 0 252 0 0 0 chr9 20662268 20662296 -121609148 + (A)n Simple_repeat Simple_repeat 1 28 0 359 125 0 14 chr9 20662408 20662480 -121608964 - L1MD2 LINE L1 0 6359 6289 1990 129 43 0 chr9 20662481 20662760 -121608684 + AluSx SINE Alu 2 292 -20 2317 127 41 8 chr9 20662761 20663155 -121608289 + L1MA6 LINE L1 5889 6295 -5 3585 109 5 38 chr9 20663187 20663275 -121608169 - L1MA6 LINE L1 -396 5904 5815 1710 159 0 80 chr9 20663275 20663614 -121607830 - AluJb SINE Alu 0 312 1 3585 109 5 38 chr9 20663614 20664137 -121607307 - L1MA6 LINE L1 -485 5815 5313 2141 93 31 0 chr9 20664143 20664464 -121606980 - L1PA13 LINE L1 -21 6142 5812 905 172 27 0 chr9 20664463 20664649 -121606795 - L1MA6 LINE L1 -813 5333 5143 * 6184 169 38 23 chr9 20664645 20665753 -121605691 + L1MB8 LINE L1 3665 4736 -1410 2276 101 7 0 chr9 20665753 20666049 -121605395 + AluSc SINE Alu 1 298 -11 6184 169 38 23 chr9 20666049 20666455 -121604989 + L1MB8 LINE L1 4736 5134 -1012 1821 228 51 31 chr9 20666457 20667307 -121604137 - L1M4 LINE L1 -1031 5115 4093 2232 222 95 54 chr9 20667327 20668247 -121603197 - L1MDa LINE L1 -5472 1068 18 695 278 105 49 chr9 20668970 20669202 -121602242 + L2 LINE L2 2538 2756 -557 2339 111 3 0 chr9 20669202 20669509 -121601935 - AluSq SINE Alu -5 308 1 695 278 105 49 chr9 20669509 20670023 -121601421 + L2 LINE L2 2756 3308 -5 342 327 46 26 chr9 20670070 20670223 -121601221 - MIR SINE MIR -84 178 23 186 339 0 0 chr9 20670235 20670297 -121601147 + MER5A DNA MER1_type 8 69 -120 393 210 22 101 chr9 20670709 20670847 -121600597 + MER5A DNA MER1_type 54 180 -9 2457 48 0 6 chr9 20671343 20671654 -121599790 - AluY SINE Alu -2 309 1 707 240 18 0 chr9 20672573 20672744 -121598700 + MLT1J1 LTR MaLR 3 176 -270 369 271 197 15 chr9 20673336 20673543 -121597901 + MIR SINE MIR 15 260 -2 214 279 58 12 chr9 20674891 20674977 -121596467 - MIR3 SINE MIR -7 201 112 861 186 144 168 chr9 20675457 20675963 -121595481 + MLT1E3 LTR MaLR 4 616 -8 2434 192 86 4 chr9 20676010 20676693 -121594751 + L1MB8 LINE L1 5352 6090 -88 276 154 195 0 chr9 20676693 20676816 -121594628 - FRAM SINE Alu -9 157 11 22 0 0 0 chr9 20678032 20678054 -121593390 + AT_rich Low_complexity Low_complexity 1 22 0 689 270 28 22 chr9 20679685 20679863 -121591581 + MIR3 SINE MIR 6 184 -24 2565 154 26 11 chr9 20681000 20681486 -121589958 + MER41B LTR ERV1 100 466 -12 24 0 0 0 chr9 20682067 20682091 -121589353 + AT_rich Low_complexity Low_complexity 1 24 0 891 203 62 75 chr9 20683071 20683298 -121588146 - MER58A DNA MER1_type 0 224 1 321 26 0 0 chr9 20683660 20683698 -121587746 + (TA)n Simple_repeat Simple_repeat 2 39 0 2118 97 24 0 chr9 20684340 20684629 -121586815 + AluSx SINE Alu 1 296 -16 2298 106 25 33 chr9 20685132 20685499 -121585945 + THE1B LTR MaLR 1 364 0 2323 111 0 10 chr9 20685879 20686186 -121585258 + AluSx SINE Alu 4 307 -5 1055 204 68 30 chr9 20686221 20686588 -121584856 + LTR37A LTR ERV1 46 426 0 1785 180 0 22 chr9 20687766 20688083 -121583361 + AluJo SINE Alu 1 310 -2 552 263 66 89 chr9 20688601 20688812 -121582632 + L2 LINE L2 1929 2130 -1184 2113 122 0 17 chr9 20688812 20689107 -121582337 + AluSx SINE Alu 3 292 -20 552 263 66 89 chr9 20689107 20689245 -121582199 + L2 LINE L2 2130 2270 -1044 528 242 50 25 chr9 20689280 20689441 -121582003 - MIR SINE MIR -10 252 88 764 275 37 60 chr9 20689476 20689774 -121581670 + L2 LINE L2 2294 2584 -730 515 181 7 49 chr9 20690143 20690213 -121581231 + LTR37A LTR ERV1 289 353 -73 2145 102 0 14 chr9 20690213 20690529 -121580915 + AluSc SINE Alu 1 312 0 515 181 7 49 chr9 20690529 20690601 -121580843 + LTR37A LTR ERV1 353 426 0 445 297 90 7 chr9 20690601 20690746 -121580698 - MIR SINE MIR -104 158 2 498 324 85 47 chr9 20690753 20691197 -121580247 + L2 LINE L2 2569 2994 -278 1999 135 143 8 chr9 20691197 20691574 -121579870 + MSTA LTR MaLR 1 428 0 7694 157 93 37 chr9 20691574 20693136 -121578308 + MSTA-int LTR MaLR 1 1649 -2 1940 161 135 5 chr9 20693138 20693517 -121577927 + MSTA LTR MaLR 1 428 0 498 324 85 47 chr9 20693517 20693544 -121577900 + L2 LINE L2 2994 3078 -194 508 249 234 19 chr9 20695502 20695711 -121575733 - MIR SINE MIR 0 262 9 186 133 0 0 chr9 20697844 20697874 -121573570 + (T)n Simple_repeat Simple_repeat 1 30 0 683 102 19 0 chr9 20698575 20698683 -121572761 + MER41B LTR ERV1 2 111 -524 180 0 0 0 chr9 20698685 20698705 -121572739 + (TA)n Simple_repeat Simple_repeat 2 21 0 1342 172 34 4 chr9 20698705 20698938 -121572506 - AluSg/x SINE Alu 0 312 73 2115 104 3 17 chr9 20698967 20699254 -121572190 + AluSq SINE Alu 1 283 -30 285 98 0 0 chr9 20699254 20699295 -121572149 + (TA)n Simple_repeat Simple_repeat 1 41 0 2065 108 20 7 chr9 20701143 20701448 -121569996 - AluSx SINE Alu -2 310 2 200 234 16 31 chr9 20701524 20701588 -121569856 - MIR SINE MIR -111 151 89 202 231 108 0 chr9 20701806 20701871 -121569573 - MIR3 SINE MIR -9 199 128 200 329 0 13 chr9 20702995 20703074 -121568370 + (TATATG)n Simple_repeat Simple_repeat 2 79 0 21 0 0 0 chr9 20703103 20703124 -121568320 + AT_rich Low_complexity Low_complexity 1 21 0 180 191 43 43 chr9 20703957 20704004 -121567440 + MIR SINE MIR 183 229 -33 28 29 0 0 chr9 20704695 20704730 -121566714 + AT_rich Low_complexity Low_complexity 1 35 0 1958 158 0 0 chr9 20705752 20706055 -121565389 - AluJo SINE Alu -9 303 1 368 174 31 61 chr9 20706162 20706260 -121565184 - L1MC5 LINE L1 -36 7925 7831 2202 161 83 40 chr9 20706266 20706714 -121564730 + MLT1C LTR MaLR 1 467 0 1016 197 43 14 chr9 20708459 20708667 -121562777 - MER58A DNA MER1_type -6 218 5 2302 88 3 10 chr9 20710034 20710340 -121561104 + AluSp SINE Alu 1 304 -9 1739 201 0 0 chr9 20710707 20711005 -121560439 + AluJo SINE Alu 1 298 -14 1569 174 10 23 chr9 20711812 20712116 -121559328 - AluJb SINE Alu -8 304 5 23 0 0 0 chr9 20712605 20712628 -121558816 + AT_rich Low_complexity Low_complexity 1 23 0 2311 98 3 3 chr9 20713116 20713422 -121558022 - AluSp SINE Alu -7 306 1 1066 172 11 21 chr9 20714039 20714203 -121557241 - AluSg/x SINE Alu -14 298 135 1995 140 0 17 chr9 20714203 20714503 -121556941 - AluSq SINE Alu -18 295 1 1066 172 11 21 chr9 20714503 20714524 -121556920 - AluSg/x SINE Alu -177 135 115 2039 131 0 23 chr9 20714585 20714891 -121556553 - AluSx SINE Alu -13 299 1 365 145 0 0 chr9 20715041 20715103 -121556341 + MER41A LTR ERV1 130 191 -363 662 143 20 0 chr9 20715105 20715203 -121556241 + AluJ/FLAM SINE Alu 2 101 -211 206 0 69 0 chr9 20715203 20715232 -121556212 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 1652 122 0 17 chr9 20715374 20715611 -121555833 - AluSx SINE Alu -79 233 1 615 142 150 0 chr9 20715612 20715739 -121555705 + L1MB4 LINE L1 6005 6150 -30 2239 118 7 0 chr9 20715753 20716059 -121555385 - AluSx SINE Alu -4 308 1 2042 113 35 0 chr9 20716345 20716629 -121554815 - AluSx SINE Alu -16 296 3 867 115 8 0 chr9 20717462 20717584 -121553860 + AluSq/x SINE Alu 1 123 -189 1711 182 3 0 chr9 20718148 20718439 -121553005 + AluJo SINE Alu 10 301 -11 2373 37 44 10 chr9 20718439 20718732 -121552712 + AluY SINE Alu 1 304 -7 2358 110 0 0 chr9 20718908 20719217 -121552227 + AluSq SINE Alu 3 311 -2 1915 127 25 0 chr9 20719436 20719711 -121551733 + AluSx SINE Alu 10 291 -21 1428 97 10 5 chr9 20719712 20719908 -121551536 + AluSp SINE Alu 29 225 -88 799 157 0 0 chr9 20720011 20720126 -121551318 - AluJb SINE Alu -195 117 3 2111 83 0 66 chr9 20720159 20720460 -121550984 - AluSx SINE Alu -11 301 21 794 206 187 0 chr9 20720460 20720674 -121550770 - MIR SINE MIR -6 256 3 237 300 118 9 chr9 20721469 20721579 -121549865 + MIR3 SINE MIR 13 134 -74 708 111 10 0 chr9 20721660 20721783 -121549661 + AluJb SINE Alu 213 336 0 2036 145 7 3 chr9 20721889 20722199 -121549245 + AluSq SINE Alu 1 311 -2 1221 129 0 0 chr9 20722199 20722377 -121549067 + AluSg/x SINE Alu 134 311 -1 1029 115 107 123 chr9 20722514 20722767 -121548677 + MER7A DNA MER2_type 2 248 -98 323 132 55 99 chr9 20722772 20722863 -121548581 + Tigger3(Golem) DNA MER2_type 2844 2930 -99 242 200 0 0 chr9 20722891 20722936 -121548508 + MER1B DNA MER1_type 6 50 -287 898 134 119 64 chr9 20722946 20723148 -121548296 + MER1B DNA MER1_type 127 339 0 445 216 11 0 chr9 20723148 20723212 -121548232 + Tigger3(Golem) DNA MER2_type 2916 2980 -49 2104 116 3 22 chr9 20724210 20724528 -121546916 - AluSx SINE Alu 0 312 1 243 0 0 0 chr9 20724561 20724588 -121546856 + (TA)n Simple_repeat Simple_repeat 2 28 0 2323 76 0 0 chr9 20724592 20724882 -121546562 - AluSx SINE Alu -18 294 5 2212 128 0 0 chr9 20725137 20725449 -121545995 + AluSx SINE Alu 1 312 0 217 114 0 68 chr9 20725526 20725570 -121545874 - MIR SINE MIR -101 161 121 21 0 0 0 chr9 20725610 20725631 -121545813 + AT_rich Low_complexity Low_complexity 1 21 0 270 195 363 0 chr9 20725952 20726065 -121545379 + MER5A DNA MER1_type 15 168 -21 715 202 48 0 chr9 20726172 20726296 -121545148 + FLAM_C SINE Alu 1 130 -3 316 83 50 17 chr9 20727119 20727208 -121544236 + Alu SINE Alu 238 328 0 308 202 67 42 chr9 20727230 20727349 -121544095 + L1MC4a LINE L1 6056 6177 -1631 2282 115 0 6 chr9 20727350 20727664 -121543780 + AluSx SINE Alu 1 312 0 1056 254 71 24 chr9 20728164 20728542 -121542902 + LTR16B LTR ERVL 1 396 -68 1042 126 0 7 chr9 20728771 20728914 -121542530 + AluSq/x SINE Alu 1 142 -170 2188 105 6 6 chr9 20729149 20729462 -121541982 - AluSq SINE Alu 0 313 1 2192 123 3 0 chr9 20729472 20729782 -121541662 - AluY SINE Alu 0 311 1 1261 123 0 0 chr9 20730143 20730314 -121541130 - AluSg/x SINE Alu -12 300 130 2077 122 23 0 chr9 20730327 20730630 -121540814 - AluSx SINE Alu -2 310 1 2091 122 27 0 chr9 20730632 20730927 -121540517 - AluSx SINE Alu -9 303 1 2103 121 3 10 chr9 20731281 20731587 -121539857 + AluSx SINE Alu 1 304 -8 297 0 0 0 chr9 20731587 20731620 -121539824 + (CA)n Simple_repeat Simple_repeat 2 34 0 923 127 0 15 chr9 20731937 20732071 -121539373 - FLAM_C SINE Alu -1 132 1 2403 75 3 3 chr9 20732684 20732978 -121538466 + AluSc SINE Alu 1 294 -15 2735 173 30 15 chr9 20733544 20734070 -121537374 + L1MB8 LINE L1 5509 6042 -136 763 133 21 14 chr9 20734083 20734216 -121537228 - L1MB4 LINE L1 0 6180 6044 1622 131 4 0 chr9 20734216 20734445 -121536999 + AluSx SINE Alu 1 230 -82 463 167 0 0 chr9 20734455 20734527 -121536917 - AluJ/FLAM SINE Alu -236 76 5 2184 112 20 0 chr9 20734594 20734898 -121536546 + AluSg SINE Alu 1 310 0 1870 116 4 0 chr9 20735198 20735456 -121535988 - AluSq SINE Alu -19 294 36 2362 96 3 0 chr9 20735610 20735911 -121535533 - AluSx SINE Alu -10 302 1 287 333 113 7 chr9 20735919 20736060 -121535384 - MIR SINE MIR -48 214 59 2043 149 0 0 chr9 20736060 20736362 -121535082 - AluJb SINE Alu -10 302 1 1933 130 3 20 chr9 20736506 20736671 -121534773 - AluSx SINE Alu -16 296 137 2359 103 0 3 chr9 20736671 20736982 -121534462 - AluSg SINE Alu 0 310 1 1933 130 3 20 chr9 20736982 20737116 -121534328 - AluSx SINE Alu -175 137 2 1593 182 0 4 chr9 20737185 20737449 -121533995 + AluJb SINE Alu 35 297 -15 1319 173 5 5 chr9 20737555 20737775 -121533669 - AluSx SINE Alu -92 220 1 931 196 20 67 chr9 20737778 20737954 -121533490 + L2 LINE L2 2418 2580 -734 2134 122 20 0 chr9 20737954 20738248 -121533196 - AluSx SINE Alu -12 300 1 931 196 20 67 chr9 20738248 20738326 -121533118 + L2 LINE L2 2580 2660 -654 2475 100 112 45 chr9 20738374 20738534 -121532910 + MSTA LTR MaLR 1 149 -279 2346 92 0 19 chr9 20738534 20738849 -121532595 - AluSg1 SINE Alu 0 309 1 2475 100 112 45 chr9 20738849 20739089 -121532355 + MSTA LTR MaLR 149 428 0 24 0 0 0 chr9 20739093 20739117 -121532327 + AT_rich Low_complexity Low_complexity 1 24 0 2538 108 45 66 chr9 20739117 20739483 -121531961 - L1PA16 LINE L1 -9 6157 5800 2374 92 3 3 chr9 20739483 20739786 -121531658 - AluSg SINE Alu -7 303 1 2538 108 45 66 chr9 20739786 20739843 -121531601 - L1PA16 LINE L1 -366 5800 5743 1328 203 28 2 chr9 20739843 20740124 -121531320 - L1P LINE L1 -1889 4257 3975 476 296 108 23 chr9 20740142 20740318 -121531126 + L2 LINE L2 2726 2916 -398 504 77 0 39 chr9 20740342 20740420 -121531024 - Alu SINE Alu -3 309 235 754 159 0 9 chr9 20740560 20740673 -121530771 + FLAM_C SINE Alu 11 122 -21 322 339 8 31 chr9 20740699 20740829 -121530615 + MER5A DNA MER1_type 63 189 0 2207 100 0 16 chr9 20740972 20741282 -121530162 + AluSc SINE Alu 1 305 -4 212 315 43 0 chr9 20741283 20741375 -121530069 - MIR SINE MIR -27 235 140 270 176 20 0 chr9 20741417 20741468 -121529976 + MER57A LTR ERV1 284 335 -68 360 188 0 62 chr9 20741662 20741742 -121529702 + AluJ/FRAM SINE Alu 228 302 0 2286 103 13 0 chr9 20742484 20742786 -121528658 + AluSx SINE Alu 1 306 -6 2178 129 0 0 chr9 20742786 20743095 -121528349 + AluSg SINE Alu 1 310 0 368 265 23 66 chr9 20743257 20743441 -121528003 - MIR3 SINE MIR -22 186 7 232 343 15 0 chr9 20743390 20743457 -121527987 + MIR SINE MIR 29 96 -166 * 252 0 0 0 chr9 20743966 20743994 -121527450 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 287 253 202 0 chr9 20744002 20744101 -121527343 - MIR SINE MIR 0 262 144 1831 97 4 0 chr9 20744126 20744373 -121527071 - AluSp SINE Alu 0 313 66 2272 104 0 0 chr9 20744674 20744972 -121526472 + AluSg SINE Alu 4 301 -9 2272 84 0 3 chr9 20744977 20745293 -121526151 + AluSg SINE Alu 1 315 0 2328 93 0 7 chr9 20745806 20746106 -121525338 + AluSg SINE Alu 1 298 -12 231 36 0 0 chr9 20746188 20746216 -121525228 + (TC)n Simple_repeat Simple_repeat 1 28 0 1565 159 45 28 chr9 20747021 20747310 -121524134 + AluJb SINE Alu 13 306 -6 1826 153 3 17 chr9 20747406 20747543 -121523901 + AluSx SINE Alu 1 138 -174 1966 124 38 0 chr9 20747543 20747833 -121523611 + AluSx SINE Alu 1 301 -11 1826 153 3 17 chr9 20747833 20747983 -121523461 + AluSx SINE Alu 138 284 -28 615 174 0 0 chr9 20747988 20748080 -121523364 + AluJo SINE Alu 127 218 -94 489 231 52 23 chr9 20748217 20748375 -121523069 + L1MC/D LINE L1 5392 5553 -568 882 216 6 28 chr9 20748377 20748558 -121522886 + AluJb SINE Alu 2 178 -134 2227 80 3 3 chr9 20748558 20748844 -121522600 + AluSp SINE Alu 24 309 -4 2025 132 30 3 chr9 20748844 20749139 -121522305 + AluSq SINE Alu 1 304 -9 2151 148 0 0 chr9 20749788 20750099 -121521345 + AluSx SINE Alu 1 311 -1 1790 161 39 0 chr9 20750711 20750996 -121520448 + AluSx SINE Alu 1 296 -16 24 0 0 0 chr9 20751063 20751087 -121520357 + AT_rich Low_complexity Low_complexity 1 24 0 250 292 192 0 chr9 20751583 20751713 -121519731 + L1ME4a LINE L1 5967 6121 0 2220 118 0 0 chr9 20752485 20752791 -121518653 + AluSx SINE Alu 2 307 -5 3197 24 1 0 chr9 20753319 20753828 -121517616 + L1P2 LINE L1 5009 5518 -637 1800 156 3 42 chr9 20754155 20754462 -121516982 + AluJo SINE Alu 1 295 -17 2195 115 0 16 chr9 20755133 20755437 -121516007 - AluSp SINE Alu -14 299 1 2038 127 0 33 chr9 20756850 20757157 -121514287 + AluSq SINE Alu 1 297 -16 29 28 0 0 chr9 20757213 20757249 -121514195 + AT_rich Low_complexity Low_complexity 1 36 0 481 227 0 0 chr9 20757258 20757355 -121514089 + AluJ/FLAM SINE Alu 2 98 -214 779 153 23 23 chr9 20757371 20757502 -121513942 - FLAM_C SINE Alu 0 133 3 555 100 11 22 chr9 20757502 20757592 -121513852 - LTR12 LTR ERV1 -625 89 1 709 229 71 92 chr9 20758615 20759011 -121512433 + L1MEd LINE L1 918 1321 -4808 1928 140 27 7 chr9 20759011 20759311 -121512133 - AluJb SINE Alu -6 306 1 709 229 71 92 chr9 20759311 20759363 -121512081 + L1MEd LINE L1 1321 1373 -4756 2000 134 48 0 chr9 20759363 20759655 -121511789 + AluSq SINE Alu 1 306 -7 709 229 71 92 chr9 20759655 20759672 -121511772 + L1MEd LINE L1 1373 1389 -4740 2077 137 14 0 chr9 20759672 20759965 -121511479 + AluSx SINE Alu 1 297 -15 709 229 71 92 chr9 20759965 20760149 -121511295 + L1MEd LINE L1 1389 1553 -4576 21 57 0 0 chr9 20760422 20760457 -121510987 + AT_rich Low_complexity Low_complexity 1 35 0 430 219 0 0 chr9 20761221 20761294 -121510150 - AluJ/FLAM SINE Alu -229 73 1 2423 156 36 24 chr9 20761640 20762140 -121509304 + L1MB8 LINE L1 5672 6177 -1 410 192 41 0 chr9 20762192 20762265 -121509179 + AluJ/FLAM SINE Alu 9 84 -228 1335 149 32 108 chr9 20762280 20762394 -121509050 + L1MB5 LINE L1 5858 5979 -195 2215 107 7 23 chr9 20762394 20762702 -121508742 + AluSx SINE Alu 1 303 -9 1335 149 32 108 chr9 20762702 20762800 -121508644 + L1MB5 LINE L1 5979 6037 -137 1804 142 47 27 chr9 20762800 20763096 -121508348 + AluJb SINE Alu 1 302 -10 1335 149 32 108 chr9 20763096 20763225 -121508219 + L1MB5 LINE L1 6037 6174 0 888 114 8 0 chr9 20763707 20763839 -121507605 + AluJb SINE Alu 178 310 -2 354 200 105 19 chr9 20763918 20764023 -121507421 + L1MC4a LINE L1 5722 5835 -1973 2310 100 0 10 chr9 20764087 20764398 -121507046 + AluSx SINE Alu 1 308 -4 1994 113 41 17 chr9 20764403 20764694 -121506750 + AluSx SINE Alu 1 298 -14 2247 112 10 0 chr9 20764788 20765084 -121506360 + AluSq SINE Alu 1 299 -14 1856 145 9 35 chr9 20765187 20765504 -121505940 - AluJb SINE Alu -3 309 1 707 240 6 0 chr9 20765507 20765686 -121505758 + L2 LINE L2 2418 2597 -717 2403 107 0 0 chr9 20765686 20765994 -121505450 - AluSx SINE Alu -4 308 1 243 274 216 0 chr9 20766040 20766142 -121505302 + L2 LINE L2 3190 3313 0 431 239 115 0 chr9 20766752 20766865 -121504579 + MIR3 SINE MIR 78 203 -5 2317 97 0 28 chr9 20766891 20767210 -121504234 + AluSg SINE Alu 1 310 0 2171 99 10 3 chr9 20767249 20767542 -121503902 + AluSq SINE Alu 1 295 -18 1145 168 106 0 chr9 20767684 20767892 -121503552 + AluJb SINE Alu 83 312 0 702 168 9 26 chr9 20767892 20768123 -121503321 + GA-rich Low_complexity Low_complexity 1 227 0 194 88 0 29 chr9 20768127 20768161 -121503283 + (GGAA)n Simple_repeat Simple_repeat 4 36 0 192 97 0 0 chr9 20768400 20768431 -121503013 + (TTTA)n Simple_repeat Simple_repeat 1 31 0 693 175 0 0 chr9 20768433 20768536 -121502908 - FRAM SINE Alu -30 146 44 1583 179 13 23 chr9 20768557 20768858 -121502586 - AluJo SINE Alu -14 298 1 267 254 0 14 chr9 20768937 20769008 -121502436 + L2 LINE L2 2992 3061 -211 258 214 71 10 chr9 20769071 20769169 -121502275 + L1MC/D LINE L1 5382 5485 -2323 818 137 0 15 chr9 20769258 20769389 -121502055 - AluJb SINE Alu -9 303 175 2198 109 10 0 chr9 20769757 20770050 -121501394 - AluY SINE Alu -15 296 1 856 124 0 29 chr9 20770170 20770307 -121501137 - FLAM_C SINE Alu 0 133 1 504 222 0 0 chr9 20770541 20770631 -121500813 - FRAM/FAM SINE Alu -87 89 1 1843 157 13 3 chr9 20771158 20771458 -121499986 + AluJb SINE Alu 1 303 -9 2102 109 35 3 chr9 20771792 20772077 -121499367 + AluSx SINE Alu 1 294 -18 1676 132 21 98 chr9 20772311 20772499 -121498945 - AluSx SINE Alu -12 300 146 2114 97 3 32 chr9 20772499 20772810 -121498634 - AluSg SINE Alu -8 302 1 1676 132 21 98 chr9 20772810 20772946 -121498498 - AluSx SINE Alu -166 146 1 2002 139 3 0 chr9 20773141 20773435 -121498009 - AluSx SINE Alu -17 295 1 2531 69 0 0 chr9 20774032 20774338 -121497106 - AluY SINE Alu -5 306 1 243 289 103 26 chr9 20775495 20775651 -121495793 - MIR SINE MIR -77 185 18 231 178 44 0 chr9 20775834 20775879 -121495565 + CT-rich Low_complexity Low_complexity 2 48 0 2043 158 7 0 chr9 20775880 20776190 -121495254 - AluJb SINE Alu 0 312 1 2341 90 0 7 chr9 20776348 20776648 -121494796 - AluSc SINE Alu -11 298 1 344 163 0 0 chr9 20776690 20776739 -121494705 + MER66B LTR ERV1 295 343 -143 1827 110 98 0 chr9 20777460 20777724 -121493720 - AluSx SINE Alu -22 290 1 2344 65 7 0 chr9 20778562 20778852 -121492592 + AluSx SINE Alu 1 292 -20 21 0 0 0 chr9 20779297 20779318 -121492126 + GC_rich Low_complexity Low_complexity 1 21 0 1205 166 61 9 chr9 20779770 20779999 -121491445 + AluJb SINE Alu 9 249 -63 1459 106 79 131 chr9 20780055 20780384 -121491060 + AluJb SINE Alu 1 312 0 2514 53 0 7 chr9 20780906 20781229 -121490215 - AluSc SINE Alu 0 309 1 1790 139 17 14 chr9 20781907 20782013 -121489431 + LTR49 LTR ERV1 1 105 -490 459 0 0 0 chr9 20782013 20782064 -121489380 + (TG)n Simple_repeat Simple_repeat 1 51 0 1790 139 17 14 chr9 20782064 20782243 -121489201 + LTR49 LTR ERV1 105 287 -308 2039 152 12 12 chr9 20782243 20782579 -121488865 - MER1B DNA MER1_type -1 338 3 1077 176 126 76 chr9 20782580 20782882 -121488562 + LTR49 LTR ERV1 279 595 0 2106 136 148 84 chr9 20783077 20783183 -121488261 + MER4A LTR ERV1 1 99 -565 1903 141 16 20 chr9 20783183 20783487 -121487957 + AluJb SINE Alu 1 303 -9 2106 136 148 84 chr9 20783487 20784000 -121487444 + MER4A LTR ERV1 99 660 -4 2376 57 37 7 chr9 20784254 20784553 -121486891 - AluY SINE Alu -3 308 1 22 0 0 0 chr9 20784730 20784752 -121486692 + AT_rich Low_complexity Low_complexity 1 22 0 901 130 22 0 chr9 20784783 20784921 -121486523 - FLAM_C SINE Alu -2 141 1 1020 195 22 0 chr9 20785017 20785202 -121486242 + MER5A DNA MER1_type 1 189 0 260 196 113 62 chr9 20785239 20785336 -121486108 - MER5A DNA MER1_type -25 164 63 252 208 69 14 chr9 20785277 20785349 -121486095 + MER5A DNA MER1_type 81 156 -33 * 240 244 83 95 chr9 20785369 20785537 -121485907 - MIR SINE MIR -50 212 47 379 181 14 0 chr9 20785538 20785610 -121485834 + MIR SINE MIR 83 155 -107 1704 175 10 7 chr9 20785640 20785943 -121485501 + AluJo SINE Alu 1 304 -8 262 232 0 29 chr9 20785947 20786016 -121485428 + L1MC4 LINE L1 7976 8042 0 248 291 67 30 chr9 20786127 20786261 -121485183 + L1ME3A LINE L1 5933 6071 -99 2032 114 44 0 chr9 20786845 20787143 -121484301 + AluY SINE Alu 1 311 0 2267 85 39 19 chr9 20787258 20787565 -121483879 + AluSq SINE Alu 1 313 0 889 147 0 0 chr9 20788061 20788190 -121483254 - FLAM_A SINE Alu -4 129 1 21 0 0 0 chr9 20788277 20788298 -121483146 + AT_rich Low_complexity Low_complexity 1 21 0 2439 74 0 0 chr9 20788305 20788602 -121482842 + AluY SINE Alu 1 297 -14 465 200 0 33 chr9 20788739 20788829 -121482615 + AluJo SINE Alu 125 211 -101 1798 246 33 7 chr9 20788851 20789310 -121482134 + L1ME3A LINE L1 5691 6161 -9 2035 146 20 0 chr9 20789405 20789707 -121481737 - AluSx SINE Alu 0 312 5 983 157 7 0 chr9 20789714 20789867 -121481577 - FRAM SINE Alu -13 163 10 23 0 0 0 chr9 20790115 20790138 -121481306 + AT_rich Low_complexity Low_complexity 1 23 0 330 298 24 40 chr9 20790149 20790273 -121481171 + L2 LINE L2 3187 3308 -5 2108 110 18 0 chr9 20790814 20791095 -121480349 + AluSx SINE Alu 1 286 -26 2171 122 3 0 chr9 20791127 20791421 -121480023 + AluSx SINE Alu 6 300 -12 236 288 55 0 chr9 20791790 20791863 -121479581 + MIR3 SINE MIR 111 187 -21 1659 171 43 17 chr9 20792356 20792655 -121478789 + AluJo SINE Alu 1 307 -5 281 303 9 46 chr9 20792690 20792799 -121478645 + L2 LINE L2 3208 3312 -1 2342 95 0 3 chr9 20792920 20793214 -121478230 + AluSx SINE Alu 5 297 -15 1998 116 0 34 chr9 20793369 20793685 -121477759 + AluSx SINE Alu 1 306 0 1804 176 0 25 chr9 20793744 20794062 -121477382 + AluJb SINE Alu 1 310 -2 527 124 34 34 chr9 20794376 20794465 -121476979 + HY4 scRNA scRNA 1 89 -4 1109 148 0 0 chr9 20794627 20794782 -121476662 - AluJb SINE Alu -23 289 135 396 278 62 21 chr9 20795017 20795161 -121476283 + MER5A DNA MER1_type 22 171 -18 2231 89 13 16 chr9 20795447 20795750 -121475694 + AluSg SINE Alu 1 302 -8 2246 99 0 3 chr9 20795788 20796080 -121475364 + AluSg1 SINE Alu 1 291 -18 1999 118 14 0 chr9 20796252 20796531 -121474913 + AluSx SINE Alu 9 291 -21 1885 114 48 31 chr9 20797377 20797666 -121473778 - AluSx SINE Alu -18 294 1 260 336 23 15 chr9 20797918 20798049 -121473395 + MIR SINE MIR 72 203 -59 2139 105 0 7 chr9 20798060 20798346 -121473098 - AluSq SINE Alu -6 307 24 2223 121 3 0 chr9 20798374 20798679 -121472765 - AluSx SINE Alu -6 306 1 1049 165 0 75 chr9 20799240 20799428 -121472016 + AluSx SINE Alu 1 174 -138 1797 17 51 76 chr9 20799534 20799771 -121471673 - AluY SINE Alu -80 231 1 192 254 0 70 chr9 20799919 20799990 -121471454 - MIR3 SINE MIR -51 157 92 1798 153 17 3 chr9 20800096 20800383 -121471061 - AluJb SINE Alu -12 300 10 355 150 17 0 chr9 20800391 20800451 -121470993 - Alu SINE Alu -1 301 241 2173 128 0 3 chr9 20800477 20800773 -121470671 - AluSx SINE Alu -17 295 1 2211 197 68 73 chr9 20800786 20801386 -121470058 + LTR9 LTR ERV1 1 597 -15 1227 186 18 22 chr9 20801401 20801627 -121469817 - AluJo SINE Alu -87 225 1 232 253 55 77 chr9 20801743 20801834 -121469610 + MIR3 SINE MIR 119 207 -1 1188 181 61 146 chr9 20802106 20802213 -121469231 + MER34B LTR ERV1 1 115 -450 2033 128 0 10 chr9 20802213 20802502 -121468942 + AluJb SINE Alu 14 299 -13 1188 181 61 146 chr9 20802502 20802688 -121468756 + MER34B LTR ERV1 115 315 -250 1841 132 0 75 chr9 20802688 20802806 -121468638 + AluSx SINE Alu 1 126 -186 1989 152 0 10 chr9 20802806 20803108 -121468336 - AluJb SINE Alu -13 299 1 1841 132 0 75 chr9 20803108 20803308 -121468136 + AluSx SINE Alu 126 295 -17 1188 181 61 146 chr9 20803308 20803650 -121467794 + MER34B LTR ERV1 315 565 0 2321 86 7 0 chr9 20803954 20804246 -121467198 + AluSx SINE Alu 3 296 -16 330 289 46 58 chr9 20804668 20804841 -121466603 + L2 LINE L2 2866 3036 -236 272 243 56 75 chr9 20804848 20804955 -121466489 - L1ME LINE L1 -393 5728 5624 653 101 11 0 chr9 20805292 20805404 -121466040 + AluSg/x SINE Alu 193 305 0 493 155 0 0 chr9 20805641 20805725 -121465719 + AluSg/x SINE Alu 219 302 -7 3066 106 2 2 chr9 20805761 20806184 -121465260 - THE1C-int LTR MaLR -1154 426 4 1975 135 61 25 chr9 20806187 20806549 -121464895 - THE1C LTR MaLR 0 375 1 239 316 73 15 chr9 20806582 20806718 -121464726 + L2 LINE L2 2176 2319 -995 1035 230 4 13 chr9 20806741 20806971 -121464473 + L1MB7 LINE L1 4013 4240 -1906 934 91 0 0 chr9 20806972 20807093 -121464351 + AluSg/x SINE Alu 172 292 -18 1203 145 29 154 chr9 20807150 20807322 -121464122 + AluJo SINE Alu 2 111 -191 2269 104 3 0 chr9 20807322 20807619 -121463825 + AluSx SINE Alu 1 298 -14 1203 145 29 154 chr9 20807619 20807790 -121463654 + AluJo SINE Alu 111 302 0 2246 118 0 3 chr9 20807802 20808108 -121463336 + AluSx SINE Alu 8 312 0 1339 213 13 3 chr9 20808108 20808408 -121463036 + L1MB7 LINE L1 4420 4722 -1424 982 180 0 0 chr9 20808417 20808578 -121462866 - AluJo/FRAM SINE Alu -15 297 137 1793 163 3 49 chr9 20808578 20808757 -121462687 - AluJo SINE Alu -2 310 124 216 0 0 0 chr9 20808757 20808781 -121462663 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2004 124 7 0 chr9 20808785 20809059 -121462385 - AluSq SINE Alu -37 276 1 1793 163 3 49 chr9 20809059 20809199 -121462245 - AluJo SINE Alu -191 121 1 529 161 95 44 chr9 20809213 20809350 -121462094 + LTR23 LTR ERV1 1 144 -293 1400 203 37 14 chr9 20809352 20809648 -121461796 + AluJb SINE Alu 1 303 -9 808 174 8 0 chr9 20809650 20809782 -121461662 + FLAM_C SINE Alu 1 133 -10 1012 137 9 71 chr9 20809798 20809911 -121461533 + LTR23 LTR ERV1 197 293 -144 2486 70 0 3 chr9 20809911 20810212 -121461232 + AluY SINE Alu 1 300 -11 1012 137 9 71 chr9 20810212 20810309 -121461135 + LTR23 LTR ERV1 293 394 -43 447 151 11 43 chr9 20810309 20810402 -121461042 + L1MB7 LINE L1 4902 4991 -1155 1446 193 68 4 chr9 20810404 20810669 -121460775 + AluJo SINE Alu 1 282 -30 934 184 5 63 chr9 20810689 20810896 -121460548 + AluJo SINE Alu 107 301 -11 609 237 0 0 chr9 20810896 20811048 -121460396 + L1MB7 LINE L1 4990 5141 -1005 818 166 0 0 chr9 20811048 20811193 -121460251 - LTR54 LTR ERV1 0 510 366 1437 135 26 22 chr9 20811237 20811466 -121459978 - LTR54 LTR ERV1 -280 230 1 561 179 9 0 chr9 20811467 20811579 -121459865 + L1MB7 LINE L1 5139 5251 -895 2691 178 26 12 chr9 20811608 20811792 -121459652 + L1MB7 LINE L1 5500 5680 -494 2098 132 0 0 chr9 20811792 20812080 -121459364 - AluSx SINE Alu -24 288 1 2691 178 26 12 chr9 20812080 20812402 -121459042 + L1MB7 LINE L1 5680 6013 -161 222 118 0 0 chr9 20812406 20812440 -121459004 + (T)n Simple_repeat Simple_repeat 1 34 0 1897 112 90 0 chr9 20813178 20813446 -121457998 - AluSc SINE Alu -17 292 1 703 183 26 0 chr9 20813447 20813600 -121457844 + L1MB7 LINE L1 6025 6181 -3 1480 150 25 83 chr9 20814770 20814921 -121456523 + AluJb SINE Alu 1 126 -186 2292 91 0 10 chr9 20814921 20815228 -121456216 + AluSq SINE Alu 1 304 -9 1480 150 25 83 chr9 20815228 20815390 -121456054 + AluJb SINE Alu 126 296 -16 195 162 0 0 chr9 20815396 20815433 -121456011 + (TG)n Simple_repeat Simple_repeat 2 38 0 271 269 0 0 chr9 20815593 20815660 -121455784 + MER5A DNA MER1_type 9 75 -114 2183 115 0 10 chr9 20815660 20815956 -121455488 + AluSx SINE Alu 1 293 -19 2392 88 7 0 chr9 20815958 20816290 -121455154 + AluY SINE Alu 1 334 0 1435 177 39 14 chr9 20816489 20816528 -121454916 - AluJb SINE Alu -22 290 253 197 0 71 0 chr9 20816528 20816556 -121454888 + (CAGTG)n Simple_repeat Simple_repeat 1 30 0 1435 177 39 14 chr9 20816556 20816799 -121454645 - AluJb SINE Alu -59 253 1 33 25 0 0 chr9 20816800 20816840 -121454604 + AT_rich Low_complexity Low_complexity 1 40 0 833 99 0 99 chr9 20816840 20816981 -121454463 - AluJb SINE Alu -185 127 1 1828 180 3 0 chr9 20816987 20817292 -121454152 - AluSx SINE Alu -6 306 1 252 0 0 0 chr9 20817311 20817339 -121454105 + (A)n Simple_repeat Simple_repeat 1 28 0 1455 174 13 68 chr9 20817342 20817433 -121454011 + AluJo SINE Alu 3 97 -215 2323 84 3 17 chr9 20817433 20817757 -121453687 + AluSc SINE Alu 1 320 0 1455 174 13 68 chr9 20817757 20817975 -121453469 + AluJo SINE Alu 97 296 -16 406 254 76 34 chr9 20818010 20818128 -121453316 + L2 LINE L2 3145 3267 -5 33 0 0 0 chr9 20818395 20818428 -121453016 + AT_rich Low_complexity Low_complexity 1 33 0 2454 71 0 0 chr9 20818428 20818722 -121452722 - AluY SINE Alu -17 294 1 1365 124 5 55 chr9 20818728 20818946 -121452498 - AluSg/x SINE Alu -17 295 89 722 197 0 8 chr9 20818960 20819087 -121452357 - FLAM_C SINE Alu -7 126 1 937 186 6 6 chr9 20819174 20819341 -121452103 - FRAM SINE Alu -18 158 1 714 172 78 0 chr9 20819726 20819854 -121451590 - FLAM_C SINE Alu -4 139 2 300 266 65 8 chr9 20819875 20819999 -121451445 - L1ME4a LINE L1 0 6121 5991 432 0 0 0 chr9 20820002 20820050 -121451394 + (CA)n Simple_repeat Simple_repeat 2 49 0 2339 99 3 0 chr9 20820297 20820601 -121450843 + AluSq SINE Alu 5 309 -4 2212 97 0 0 chr9 20821753 20822031 -121449413 - AluY SINE Alu -29 282 5 249 274 0 0 chr9 20822642 20822726 -121448718 + (TATATG)n Simple_repeat Simple_repeat 3 86 0 1656 179 0 15 chr9 20822740 20823008 -121448436 - AluJb SINE Alu -48 264 1 441 205 8 90 chr9 20823013 20823135 -121448309 - MER101 LTR ERV1 -250 224 113 1542 167 26 23 chr9 20823135 20823281 -121448163 - AluJb SINE Alu -47 265 115 2368 70 0 7 chr9 20823281 20823592 -121447852 + AluSq SINE Alu 1 309 0 1542 167 26 23 chr9 20823592 20823708 -121447736 - AluJb SINE Alu -197 115 1 25 65 0 0 chr9 20823714 20823760 -121447684 + AT_rich Low_complexity Low_complexity 1 46 0 21 0 0 0 chr9 20823832 20823853 -121447591 + AT_rich Low_complexity Low_complexity 1 21 0 499 163 0 0 chr9 20823874 20823954 -121447490 - AluS SINE Alu -233 80 1 710 141 13 74 chr9 20824216 20824267 -121447177 + LTR23 LTR ERV1 255 308 -129 2477 70 0 3 chr9 20824267 20824567 -121446877 + AluY SINE Alu 1 299 -12 710 141 13 74 chr9 20824567 20824664 -121446780 + LTR23 LTR ERV1 308 394 -43 447 151 11 43 chr9 20824664 20824757 -121446687 + L1MB7 LINE L1 4902 4991 -1155 1477 191 69 0 chr9 20824759 20825021 -121446423 + AluJo SINE Alu 1 280 -32 959 174 5 63 chr9 20825043 20825250 -121446194 + AluJo SINE Alu 107 301 -11 609 237 0 0 chr9 20825250 20825402 -121446042 + L1MB7 LINE L1 4990 5141 -1005 818 166 0 0 chr9 20825402 20825547 -121445897 - LTR54 LTR ERV1 0 510 366 1437 135 26 22 chr9 20825591 20825820 -121445624 - LTR54 LTR ERV1 -280 230 1 561 179 9 0 chr9 20825821 20825933 -121445511 + L1MB7 LINE L1 5139 5251 -895 2691 178 26 12 chr9 20825962 20826146 -121445298 + L1MB7 LINE L1 5500 5680 -494 2098 132 0 0 chr9 20826146 20826434 -121445010 - AluSx SINE Alu -24 288 1 2691 178 26 12 chr9 20826434 20826756 -121444688 + L1MB7 LINE L1 5680 6013 -161 222 118 0 0 chr9 20826760 20826794 -121444650 + (T)n Simple_repeat Simple_repeat 1 34 0 1897 112 90 0 chr9 20827532 20827800 -121443644 - AluSc SINE Alu -17 292 1 703 183 26 0 chr9 20827801 20827954 -121443490 + L1MB7 LINE L1 6025 6181 -3 1480 150 25 83 chr9 20829124 20829275 -121442169 + AluJb SINE Alu 1 126 -186 2292 91 0 10 chr9 20829275 20829582 -121441862 + AluSq SINE Alu 1 304 -9 1480 150 25 83 chr9 20829582 20829744 -121441700 + AluJb SINE Alu 126 296 -16 195 162 0 0 chr9 20829750 20829787 -121441657 + (TG)n Simple_repeat Simple_repeat 2 38 0 271 269 0 0 chr9 20829947 20830014 -121441430 + MER5A DNA MER1_type 9 75 -114 2199 112 0 10 chr9 20830014 20830310 -121441134 + AluSx SINE Alu 1 293 -19 2711 45 0 0 chr9 20830312 20830621 -121440823 + AluY SINE Alu 1 309 -2 216 266 117 55 chr9 20830621 20830638 -121440806 - L2 LINE L2 -2909 405 390 2483 62 3 10 chr9 20830638 20830947 -121440497 + AluSq SINE Alu 1 307 -6 216 266 117 55 chr9 20830947 20831057 -121440387 - L2 LINE L2 -2923 391 270 195 219 0 0 chr9 20831889 20831930 -121439514 - MIR SINE MIR -5 257 217 31 0 0 0 chr9 20832197 20832228 -121439216 + AT_rich Low_complexity Low_complexity 1 31 0 2275 90 0 0 chr9 20832397 20832687 -121438757 - AluSc SINE Alu -19 290 1 679 161 0 46 chr9 20832691 20832821 -121438623 - FLAM_C SINE Alu -7 136 13 1522 132 113 8 chr9 20832824 20833089 -121438355 - AluJo SINE Alu -19 293 1 4685 123 18 20 chr9 20833091 20833878 -121437566 - L1MA4 LINE L1 -7 6293 5509 1849 106 31 100 chr9 20834957 20835278 -121436166 - AluSx SINE Alu -13 299 1 2197 109 0 7 chr9 20835623 20835925 -121435519 - AluY SINE Alu -11 300 1 1574 161 26 48 chr9 20835926 20836237 -121435207 - AluJb SINE Alu -8 304 1 2202 108 6 13 chr9 20836346 20836660 -121434784 - AluSq SINE Alu -1 312 1 2287 76 42 0 chr9 20837005 20837293 -121434151 - AluY SINE Alu -11 300 1 207 200 0 0 chr9 20837368 20837413 -121434031 + T-rich Low_complexity Low_complexity 1 45 0 2373 68 10 3 chr9 20838422 20838714 -121432730 - AluSq SINE Alu -19 294 1 2130 114 3 25 chr9 20838735 20839051 -121432393 - AluSc SINE Alu 0 309 1 419 157 108 10 chr9 20839051 20839153 -121432291 - L1M4 LINE L1 -1904 4242 4131 389 170 113 14 chr9 20839155 20839295 -121432149 - Charlie5 DNA MER1_type -28 2584 2431 660 245 19 58 chr9 20839295 20839467 -121431977 - MLT1C LTR MaLR 0 467 303 2398 100 3 0 chr9 20839467 20839777 -121431667 - AluSp SINE Alu -2 311 1 660 245 19 58 chr9 20839777 20839812 -121431632 - MLT1C LTR MaLR -164 303 268 1678 168 7 7 chr9 20839964 20840249 -121431195 + AluSx SINE Alu 19 303 -9 1812 180 47 7 chr9 20840320 20840748 -121430696 - L1M4 LINE L1 -1603 4543 4099 765 201 26 27 chr9 20840755 20840956 -121430488 + L1MB3 LINE L1 5671 5860 -323 11080 177 25 46 chr9 20840956 20841989 -121429455 + L1M1 LINE L1 1400 2453 -5112 2281 101 13 0 chr9 20841989 20842296 -121429148 + AluSq SINE Alu 1 311 -2 11080 177 25 46 chr9 20842296 20843050 -121428394 + L1M1 LINE L1 2453 3221 -4344 1704 177 7 7 chr9 20843050 20843344 -121428100 + AluJb SINE Alu 3 296 -16 11080 177 25 46 chr9 20843344 20843609 -121427835 + L1M1 LINE L1 3221 3490 -4075 1672 207 0 7 chr9 20843609 20843909 -121427535 + AluJo SINE Alu 1 298 -14 11080 177 25 46 chr9 20843909 20844511 -121426933 + L1M1 LINE L1 3490 4242 -3323 3551 59 0 0 chr9 20844509 20844951 -121426493 - L1PA5 LINE L1 -1044 5102 4661 * 7446 45 0 6 chr9 20844951 20846020 -121425424 + L1PA5 LINE L1 5116 6154 0 3449 174 43 32 chr9 20846020 20846131 -121425313 + L1M1 LINE L1 4238 4346 -3219 1654 197 3 7 chr9 20846131 20846430 -121425014 + AluJb SINE Alu 1 298 -14 3449 174 43 32 chr9 20846430 20846841 -121424603 + L1M1 LINE L1 4346 4775 -2790 2196 116 0 23 chr9 20846841 20847142 -121424302 + AluSx SINE Alu 1 294 -18 3449 174 43 32 chr9 20847142 20847428 -121424016 + L1M1 LINE L1 4775 5056 -2509 600 196 27 0 chr9 20847531 20847643 -121423801 + AluJo SINE Alu 23 137 -175 2103 150 0 6 chr9 20847655 20847969 -121423475 + AluSx SINE Alu 1 312 0 455 176 35 0 chr9 20848011 20848096 -121423348 + FLAM_A SINE Alu 25 112 -30 25 0 0 0 chr9 20848096 20848121 -121423323 + AT_rich Low_complexity Low_complexity 1 25 0 1808 161 16 10 chr9 20848121 20848425 -121423019 + AluJb SINE Alu 2 307 -5 2521 112 53 21 chr9 20848430 20849011 -121422433 + Tigger3(Golem) DNA MER2_type 2369 3028 -1 1853 152 3 7 chr9 20849633 20849923 -121421521 + AluJb SINE Alu 1 289 -23 40 21 0 0 chr9 20849929 20849976 -121421468 + AT_rich Low_complexity Low_complexity 1 47 0 2180 78 25 0 chr9 20850229 20850511 -121420933 + AluSg SINE Alu 1 289 -21 303 141 0 0 chr9 20850514 20850578 -121420866 + (CAGG)n Simple_repeat Simple_repeat 2 65 0 944 124 212 87 chr9 20850822 20850976 -121420468 - AluJo SINE Alu -16 296 163 2184 118 3 7 chr9 20850976 20851281 -121420163 - AluSq SINE Alu -9 304 1 944 124 212 87 chr9 20851281 20851367 -121420077 - AluJo SINE Alu -149 163 26 1974 81 0 0 chr9 20851370 20851604 -121419840 - AluSc SINE Alu -54 255 22 377 260 0 0 chr9 20851648 20851752 -121419692 - MER5A DNA MER1_type -80 109 6 180 288 45 0 chr9 20851978 20852044 -121419400 - L2 LINE L2 -1343 1971 1903 2102 115 34 10 chr9 20852245 20852540 -121418904 + AluSx SINE Alu 1 302 -10 204 40 0 0 chr9 20852583 20852608 -121418836 + (A)n Simple_repeat Simple_repeat 1 25 0 2773 224 91 8 chr9 20852699 20853008 -121418436 + L1M4 LINE L1 3827 4109 -2037 189 0 0 0 chr9 20853008 20853029 -121418415 + (CA)n Simple_repeat Simple_repeat 2 22 0 2773 224 91 8 chr9 20853029 20853478 -121417966 + L1M4 LINE L1 4109 4648 -1498 2145 122 0 22 chr9 20854767 20854903 -121416541 + AluSx SINE Alu 1 138 -174 1937 146 7 3 chr9 20854903 20855211 -121416233 + AluSq SINE Alu 1 309 -4 2145 122 0 22 chr9 20855211 20855393 -121416051 + AluSx SINE Alu 138 312 0 2318 90 0 3 chr9 20855396 20855686 -121415758 + AluSx SINE Alu 1 289 -23 2839 204 69 24 chr9 20856043 20856079 -121415365 - L1ME1 LINE L1 -92 6074 6041 2402 86 3 0 chr9 20856079 20856380 -121415064 + AluSp SINE Alu 1 302 -11 2839 204 69 24 chr9 20856380 20857288 -121414156 - L1ME1 LINE L1 -125 6041 5084 2217 110 0 43 chr9 20857288 20857423 -121414021 + AluSx SINE Alu 1 140 -172 2421 69 3 13 chr9 20857423 20857727 -121413717 + AluY SINE Alu 2 302 -9 2217 110 0 43 chr9 20857727 20857917 -121413527 + AluSx SINE Alu 140 312 0 2839 204 69 24 chr9 20857917 20857943 -121413501 - L1ME1 LINE L1 -1082 5084 5061 6687 162 16 111 chr9 20858049 20858371 -121413073 + L1MA3 LINE L1 3370 3721 -2584 2343 89 0 17 chr9 20858371 20858673 -121412771 + AluSq SINE Alu 1 297 -16 6687 162 16 111 chr9 20858673 20858747 -121412697 + L1MA3 LINE L1 3721 3800 -2505 1501 129 0 10 chr9 20858747 20858990 -121412454 + AluSq SINE Alu 76 316 0 6687 162 16 111 chr9 20858990 20859462 -121411982 + L1MA3 LINE L1 3800 4315 -1990 1100 82 0 7 chr9 20859462 20859597 -121411847 + AluSq/x SINE Alu 1 134 -179 1879 148 42 0 chr9 20859599 20859882 -121411562 + AluSx SINE Alu 1 295 -17 6687 162 16 111 chr9 20859882 20859943 -121411501 + L1MA3 LINE L1 4316 4381 -1924 2252 113 3 3 chr9 20859943 20860254 -121411190 + AluSx SINE Alu 1 311 -1 6687 162 16 111 chr9 20860254 20860527 -121410917 + L1MA3 LINE L1 4381 4678 -1627 1348 204 27 30 chr9 20860527 20860826 -121410618 + AluJo SINE Alu 1 298 -14 6687 162 16 111 chr9 20860826 20861399 -121410045 + L1MA3 LINE L1 4678 5304 -1001 326 170 0 0 chr9 20861399 20861452 -121409992 - Alu SINE Alu 0 302 250 6687 162 16 111 chr9 20861452 20861634 -121409810 + L1MA3 LINE L1 5304 5502 -803 2031 140 3 0 chr9 20861634 20861919 -121409525 + AluSx SINE Alu 1 286 -26 360 0 0 0 chr9 20861919 20861959 -121409485 + (CATAA)n Simple_repeat Simple_repeat 2 41 0 6687 162 16 111 chr9 20861959 20862526 -121408918 + L1MA3 LINE L1 5501 5720 -585 2455 77 3 3 chr9 20862526 20862837 -121408607 + AluSp SINE Alu 1 311 -2 6687 162 16 111 chr9 20862837 20863372 -121408072 + L1MA3 LINE L1 5720 6304 -1 2240 102 3 0 chr9 20863376 20863669 -121407775 + AluSx SINE Alu 1 294 -18 3253 237 53 17 chr9 20863689 20864174 -121407270 - L1M4 LINE L1 -2201 3945 3479 207 88 0 0 chr9 20864174 20864208 -121407236 + (ATTG)n Simple_repeat Simple_repeat 2 35 0 1648 171 44 0 chr9 20864208 20864482 -121406962 - AluJb SINE Alu -26 286 1 3253 237 53 17 chr9 20864482 20864953 -121406491 - L1M4 LINE L1 -2666 3480 2953 1189 139 0 0 chr9 20864954 20865120 -121406324 - AluSg/x SINE Alu -10 302 137 211 276 0 0 chr9 20865158 20865216 -121406228 + T-rich Low_complexity Low_complexity 3 60 0 2478 70 0 0 chr9 20865243 20865541 -121405903 - AluY SINE Alu -13 298 1 21 36 0 0 chr9 20865635 20865663 -121405781 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr9 20865670 20865705 -121405739 + AT_rich Low_complexity Low_complexity 1 35 0 2253 98 6 22 chr9 20865716 20866032 -121405412 + AluSp SINE Alu 2 312 -1 21 36 0 0 chr9 20866040 20866068 -121405376 + AT_rich Low_complexity Low_complexity 1 28 0 647 236 0 31 chr9 20866068 20866229 -121405215 - L1M4 LINE L1 -3269 2877 2722 922 130 0 20 chr9 20866229 20866375 -121405069 - FLAM_C SINE Alu 0 143 1 1232 222 67 3 chr9 20866376 20866691 -121404753 - L1M4 LINE L1 -3415 2731 2397 1635 153 0 8 chr9 20866913 20867168 -121404276 - AluJo SINE Alu -18 294 42 1837 128 0 47 chr9 20867182 20867480 -121403964 - AluSq SINE Alu -29 284 1 3323 171 102 22 chr9 20867515 20868242 -121403202 - L1MA9 LINE L1 -34 6278 5494 832 184 0 0 chr9 20868335 20868471 -121402973 - AluJo SINE Alu -176 136 1 234 105 0 0 chr9 20868573 20868611 -121402833 + Alu SINE Alu 264 301 -1 347 246 168 26 chr9 20869020 20869211 -121402233 - Charlie8 DNA MER1_type -2161 256 39 1851 157 7 7 chr9 20869292 20869585 -121401859 + AluSx SINE Alu 1 293 -19 267 31 0 0 chr9 20869585 20869617 -121401827 + (TG)n Simple_repeat Simple_repeat 2 33 0 833 208 0 31 chr9 20869737 20869896 -121401548 - FRAM SINE Alu -11 155 2 2637 94 5 27 chr9 20869918 20870290 -121401154 + THE1B LTR MaLR 1 364 0 11750 89 0 2 chr9 20870290 20871803 -121399641 + THE1B-int LTR MaLR 1 1510 -70 544 254 0 8 chr9 20871803 20871937 -121399507 + AluSq/x SINE Alu 2 134 -179 1722 96 5 5 chr9 20871937 20872157 -121399287 - AluSx SINE Alu -81 231 12 588 212 8 8 chr9 20872193 20872311 -121399133 - FLAM_C SINE Alu -24 119 2 1319 195 111 0 chr9 20872371 20872633 -121398811 + AluJo SINE Alu 1 291 -21 2370 99 0 10 chr9 20872773 20873077 -121398367 + AluSq SINE Alu 1 301 -12 1855 287 107 48 chr9 20873109 20873238 -121398206 - L2 LINE L2 -39 3274 3154 2021 125 24 0 chr9 20873238 20873525 -121397919 + AluSx SINE Alu 1 294 -18 1855 287 107 48 chr9 20873525 20873639 -121397805 - L2 LINE L2 -159 3154 3048 2322 103 0 0 chr9 20873639 20873940 -121397504 + AluSp SINE Alu 1 301 -12 1855 287 107 48 chr9 20873940 20874635 -121396809 - L2 LINE L2 -265 3048 2227 1704 184 14 7 chr9 20874635 20874928 -121396516 + AluJo SINE Alu 1 295 -17 1855 287 107 48 chr9 20874928 20875433 -121396011 - L2 LINE L2 -1086 2227 1753 207 108 0 27 chr9 20875576 20875613 -121395831 + (TAAAAA)n Simple_repeat Simple_repeat 3 38 0 491 147 266 37 chr9 20875786 20875895 -121395549 + AluJo SINE Alu 2 135 -177 632 308 31 80 chr9 20875988 20876375 -121395069 - L2 LINE L2 -2067 1247 880 221 273 61 53 chr9 20876376 20876456 -121394988 - L2 LINE L2 -2382 932 849 2411 84 0 3 chr9 20876456 20876754 -121394690 - AluSg SINE Alu -13 297 1 221 273 61 53 chr9 20876754 20876804 -121394640 - L2 LINE L2 -2465 849 801 381 200 158 91 chr9 20876804 20876849 -121394595 + MER5B DNA MER1_type 2 43 -135 2422 65 3 0 chr9 20876849 20877142 -121394302 - AluY SINE Alu -17 294 1 381 200 158 91 chr9 20877142 20877261 -121394183 + MER5B DNA MER1_type 43 177 -1 336 232 81 0 chr9 20877389 20877488 -121393956 - MIR SINE MIR -44 218 112 252 158 0 0 chr9 20877535 20877573 -121393871 + L1MEc LINE L1 2034 2071 -4325 414 55 0 0 chr9 20877573 20877628 -121393816 - Alu SINE Alu -14 298 244 2084 196 63 7 chr9 20877645 20878074 -121393370 - L1MB5 LINE L1 -36 6138 5686 1164 196 5 14 chr9 20878076 20878295 -121393149 - AluJb SINE Alu -13 299 83 1745 117 0 0 chr9 20878295 20878526 -121392918 - AluSg/x SINE Alu -13 297 67 6177 90 33 6 chr9 20878628 20880054 -121391390 - L1PA13 LINE L1 -12 6151 4712 634 121 0 0 chr9 20880090 20880181 -121391263 - AluSc SINE Alu -13 296 206 943 64 0 0 chr9 20880182 20880291 -121391153 - AluSq/x SINE Alu -203 109 1 522 103 0 0 chr9 20880346 20880424 -121391020 + (TAGA)n Simple_repeat Simple_repeat 3 80 0 1246 136 6 0 chr9 20880432 20880609 -121390835 - AluSg/x SINE Alu -12 300 123 269 103 0 0 chr9 20881401 20881440 -121390004 + Alu SINE Alu 257 295 -5 7412 58 12 16 chr9 20881441 20883047 -121388397 + SVA Other Other 60 1386 0 299 226 0 0 chr9 20883056 20883118 -121388326 + L1ME LINE L1 5609 5670 -451 551 158 0 0 chr9 20883308 20883390 -121388054 + AluJ/FLAM SINE Alu 2 83 -229 242 163 41 0 chr9 20883427 20883525 -121387919 + (TA)n Simple_repeat Simple_repeat 1 102 0 37 52 0 0 chr9 20883563 20883621 -121387823 + AT_rich Low_complexity Low_complexity 1 58 0 207 69 0 0 chr9 20883621 20883650 -121387794 + (CA)n Simple_repeat Simple_repeat 2 30 0 532 212 212 0 chr9 20883658 20883804 -121387640 - MER58A DNA MER1_type -47 177 1 380 260 10 21 chr9 20884106 20884202 -121387242 + MIR3 SINE MIR 86 180 -28 404 299 90 6 chr9 20884808 20884975 -121386469 + MIR SINE MIR 7 187 -75 2345 108 0 0 chr9 20885220 20885525 -121385919 - AluSx SINE Alu -7 305 1 266 247 55 0 chr9 20886337 20886410 -121385034 - MIR3 SINE MIR -28 180 104 2060 152 0 0 chr9 20886566 20886868 -121384576 + AluJb SINE Alu 1 302 -10 2466 100 0 0 chr9 20887110 20887420 -121384024 + AluSg SINE Alu 1 310 0 331 291 47 27 chr9 20887443 20887591 -121383853 - MIR SINE MIR -1 261 111 2275 128 0 0 chr9 20887730 20888043 -121383401 + AluSq SINE Alu 1 313 0 890 86 0 59 chr9 20888074 20888236 -121383208 + (GGAAA)n Simple_repeat Simple_repeat 3 154 -24 2216 115 0 0 chr9 20888236 20888540 -121382904 + AluY SINE Alu 5 308 -3 890 86 0 59 chr9 20888540 20888564 -121382880 + (GGAAA)n Simple_repeat Simple_repeat 154 178 0 317 297 243 11 chr9 20888964 20889149 -121382295 - MIR SINE MIR -6 256 29 560 172 147 0 chr9 20889301 20889417 -121382027 - FLAM_A SINE Alu 0 133 1 254 140 0 20 chr9 20889760 20889810 -121381634 + (GGGGA)n Simple_repeat Simple_repeat 3 51 0 * 666 179 0 0 chr9 20889805 20889939 -121381505 + GA-rich Low_complexity Low_complexity 1 134 0 24 32 0 0 chr9 20889947 20889978 -121381466 + AT_rich Low_complexity Low_complexity 1 31 0 703 272 77 0 chr9 20890494 20890755 -121380689 + L2 LINE L2 3029 3309 -4 2062 131 3 29 chr9 20892852 20893164 -121378280 - AluSx SINE Alu -8 304 1 534 172 131 41 chr9 20893400 20893522 -121377922 - FLAM_A SINE Alu 0 133 1 2331 97 0 3 chr9 20893531 20893831 -121377613 - AluSq SINE Alu -11 302 4 1008 184 0 60 chr9 20894174 20894269 -121377175 - MER33 DNA MER1_type -2357 228 129 1682 160 6 55 chr9 20894269 20894581 -121376863 - AluJo SINE Alu -15 297 1 1008 184 0 60 chr9 20894581 20894719 -121376725 - MER33 DNA MER1_type -2456 129 9 2381 149 9 30 chr9 20894815 20895243 -121376201 - L1MB5 LINE L1 -6 6168 5750 390 120 27 67 chr9 20895248 20895323 -121376121 + MLT1A1 LTR MaLR 1 72 -293 1792 171 15 36 chr9 20895323 20895656 -121375788 + MER7A DNA MER2_type 4 327 -19 1134 239 113 7 chr9 20895619 20895929 -121375515 + MLT1A1 LTR MaLR 23 365 0 * 781 158 48 12 chr9 20895942 20896107 -121375337 - L1MB5 LINE L1 -567 5613 5443 1890 160 10 13 chr9 20896792 20897099 -121374345 - AluSx SINE Alu -6 306 1 2175 97 0 14 chr9 20897370 20897678 -121373766 - AluSq SINE Alu 0 304 1 8455 77 28 1 chr9 20897728 20899656 -121371788 - L1PA7 LINE L1 0 6154 4190 2196 90 32 26 chr9 20899749 20900059 -121371385 + AluSq SINE Alu 1 312 -1 222 312 0 13 chr9 20900361 20900438 -121371006 + GA-rich Low_complexity Low_complexity 3 78 0 2098 118 0 26 chr9 20901027 20901374 -121370070 - AluSx SINE Alu 0 312 1 1355 135 0 174 chr9 20901720 20902082 -121369362 - AluJb SINE Alu -3 299 1 626 176 0 42 chr9 20902371 20902490 -121368954 + MER81 DNA DNA 1 114 0 2272 120 0 3 chr9 20902958 20903266 -121368178 - AluSx SINE Alu -5 307 1 249 322 43 0 chr9 20903471 20903586 -121367858 + L1ME LINE L1 5524 5643 -478 840 252 69 0 chr9 20903801 20904019 -121367425 + L1MC/D LINE L1 5374 5606 -2202 1696 130 120 7 chr9 20904019 20904295 -121367149 + AluSg1 SINE Alu 1 307 -2 195 386 76 0 chr9 20904404 20904536 -121366908 + L2 LINE L2 3122 3263 -9 216 200 0 0 chr9 20904761 20904801 -121366643 + (ATG)n Simple_repeat Simple_repeat 3 42 0 506 225 138 6 chr9 20904803 20904963 -121366481 - MIR SINE MIR -4 258 78 1629 155 16 65 chr9 20905559 20905868 -121365576 - AluJo SINE Alu -18 294 1 1973 110 73 6 chr9 20905957 20906266 -121365178 + MLT1B LTR MaLR 1 328 -62 2038 107 0 30 chr9 20906266 20906577 -121364867 + AluSx SINE Alu 1 284 -28 1973 110 73 6 chr9 20906577 20906622 -121364822 + MLT1B LTR MaLR 328 369 -21 2358 96 0 3 chr9 20906731 20907044 -121364400 + AluSx SINE Alu 1 312 0 389 120 53 27 chr9 20907044 20907119 -121364325 - Tigger3(Golem) DNA MER2_type -676 2353 2277 * 471 212 50 0 chr9 20907113 20907212 -121364232 - Tigger3(Golem) DNA MER2_type -2924 105 2 2272 224 61 33 chr9 20907212 20907963 -121363481 + L1MB5 LINE L1 4501 5272 -874 508 173 0 0 chr9 20907994 20908075 -121363369 + FLAM_C SINE Alu 37 117 -26 450 53 0 0 chr9 20908075 20908132 -121363312 + (CA)n Simple_repeat Simple_repeat 2 58 0 2329 95 0 0 chr9 20908379 20908664 -121362780 + AluSx SINE Alu 1 288 -24 201 39 0 0 chr9 20908664 20908690 -121362754 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 2429 86 3 0 chr9 20908906 20909209 -121362235 + AluSx SINE Alu 1 304 -8 3853 122 27 12 chr9 20909215 20909854 -121361590 + L1MB2 LINE L1 5522 6169 -2 681 185 0 31 chr9 20909864 20909994 -121361450 - FLAM_C SINE Alu -7 126 1 726 121 0 0 chr9 20910108 20910224 -121361220 + L1MB5 LINE L1 5324 5439 -741 441 132 8 139 chr9 20910224 20910353 -121361091 + FLAM_A SINE Alu 26 137 -5 2774 160 114 10 chr9 20910353 20910965 -121360479 + L1MB5 LINE L1 5490 6165 -9 1994 85 0 62 chr9 20911184 20911491 -121359953 - AluSx SINE Alu -24 288 1 474 258 0 8 chr9 20913313 20913433 -121358011 + L1M4 LINE L1 3986 4104 -2042 1118 253 88 10 chr9 20913435 20913937 -121357507 + L1M4 LINE L1 4218 4758 -1388 298 90 82 22 chr9 20913946 20914080 -121357364 + (TATAA)n Simple_repeat Simple_repeat 1 142 0 1393 209 42 76 chr9 20914080 20914382 -121357062 + L1M4 LINE L1 4752 5063 -1083 2811 6 0 10 chr9 20914382 20914696 -121356748 - AluYa5 SINE Alu 0 311 1 2065 117 14 7 chr9 20914698 20914988 -121356456 - AluSc SINE Alu -17 292 1 1393 209 42 76 chr9 20914988 20915046 -121356398 + L1M4 LINE L1 5064 5122 -1024 1597 117 0 0 chr9 20915046 20915260 -121356184 - AluSq SINE Alu -9 304 91 1393 209 42 76 chr9 20915260 20915320 -121356124 + L1M4 LINE L1 5122 5182 -964 1713 196 3 19 chr9 20915320 20915637 -121355807 - AluJb SINE Alu 0 312 1 1393 209 42 76 chr9 20915637 20915776 -121355668 + L1M4 LINE L1 5182 5297 -849 21 0 0 0 chr9 20916067 20916088 -121355356 + AT_rich Low_complexity Low_complexity 1 21 0 285 259 200 22 chr9 20917362 20917497 -121353947 - MER5A DNA MER1_type -5 184 26 1849 96 52 4 chr9 20917630 20917881 -121353563 + AluSx SINE Alu 41 303 -9 362 175 75 0 chr9 20918051 20918131 -121353313 - AluJ SINE Alu -5 297 212 846 158 82 25 chr9 20918133 20918291 -121353153 - AluJ SINE Alu -143 169 3 477 117 39 0 chr9 20919734 20919811 -121351633 - MADE1 DNA Mariner 0 80 1 1999 89 55 17 chr9 20920044 20920337 -121351107 - AluSx SINE Alu -8 304 1 408 219 59 41 chr9 20921249 20921418 -121350026 + L1MC4a LINE L1 7635 7806 -2 1668 175 27 17 chr9 20922457 20922749 -121348695 - AluJo SINE Alu -17 295 1 1957 153 34 10 chr9 20923110 20923430 -121348014 - AluJb SINE Alu 0 312 1 242 211 53 0 chr9 20923678 20923735 -121347709 + MLT1J LTR MaLR 347 406 -105 1531 186 39 7 chr9 20923776 20924055 -121347389 - AluJo SINE Alu -24 288 1 291 135 0 0 chr9 20924058 20924110 -121347334 - L1MA8 LINE L1 -5 6286 6235 1597 154 8 19 chr9 20924120 20924379 -121347065 - AluJb SINE Alu -26 286 31 374 167 0 0 chr9 20924495 20924561 -121346883 + AluS SINE Alu 1 66 -236 21 0 0 0 chr9 20924647 20924668 -121346776 + AT_rich Low_complexity Low_complexity 1 21 0 2699 168 76 20 chr9 20924792 20924924 -121346520 - L1MB8 LINE L1 -13 6165 6034 5029 223 45 69 chr9 20924924 20925166 -121346278 - L1MD3 LINE L1 -743 6214 5968 2190 109 0 13 chr9 20925166 20925470 -121345974 - AluSx SINE Alu -12 300 1 5029 223 45 69 chr9 20925470 20926411 -121345033 - L1MD3 LINE L1 -989 5968 5736 2400 48 7 10 chr9 20926411 20926704 -121344740 - AluY SINE Alu -19 292 1 5029 223 45 69 chr9 20926704 20927960 -121343484 - L1MD3 LINE L1 -1221 5736 4452 1385 153 8 50 chr9 20927964 20928099 -121343345 - L1MD3 LINE L1 -6042 817 695 2161 115 6 13 chr9 20928099 20928413 -121343031 - AluSx SINE Alu 0 312 1 1385 153 8 50 chr9 20928413 20928518 -121342926 - L1MD3 LINE L1 -6164 695 587 291 285 125 25 chr9 20928539 20928739 -121342705 - L1MC/D LINE L1 -2095 5713 5494 805 177 0 74 chr9 20928808 20928983 -121342461 - FRAM SINE Alu -10 166 5 2197 120 0 10 chr9 20928996 20929295 -121342149 - AluSx SINE Alu -16 296 1 1960 145 29 89 chr9 20929370 20929503 -121341941 + MLT1B LTR MaLR 1 140 -250 1972 90 49 21 chr9 20929503 20929791 -121341653 - AluSg1 SINE Alu -13 296 1 1960 145 29 89 chr9 20929791 20930072 -121341372 + MLT1B LTR MaLR 140 390 0 25 0 0 0 chr9 20930502 20930527 -121340917 + AT_rich Low_complexity Low_complexity 1 25 0 398 225 25 42 chr9 20930598 20930718 -121340726 - L1ME1 LINE L1 -337 5829 5712 1906 153 0 0 chr9 20930728 20931032 -121340412 - AluSx SINE Alu 0 304 1 21 0 0 0 chr9 20931300 20931321 -121340123 + AT_rich Low_complexity Low_complexity 1 21 0 442 339 12 12 chr9 20931659 20931824 -121339620 + MIR SINE MIR 21 185 -77 2195 101 37 0 chr9 20931861 20932159 -121339285 + AluSx SINE Alu 1 309 -3 2406 47 0 53 chr9 20932163 20932485 -121338959 + AluY SINE Alu 7 311 0 743 120 114 18 chr9 20932485 20932652 -121338792 + L1MCa LINE L1 1745 1927 -4499 * 2136 161 19 24 chr9 20932648 20933114 -121338330 + L1MC/D LINE L1 5299 5762 -480 572 233 99 40 chr9 20933227 20933480 -121337964 + MLT1J LTR MaLR 240 507 -4 874 202 12 97 chr9 20934321 20934613 -121336831 + L1MC5 LINE L1 6673 7028 -1014 697 195 0 8 chr9 20934627 20934745 -121336699 + FLAM_A SINE Alu 5 121 -12 840 216 76 47 chr9 20934767 20935109 -121336335 + L1MC5 LINE L1 6935 7286 -675 1042 210 106 63 chr9 20935199 20935719 -121335725 + L1MC5 LINE L1 7400 7941 -20 295 393 34 8 chr9 20936406 20936523 -121334921 + L2 LINE L2 3145 3264 -8 21 0 0 0 chr9 20937126 20937147 -121334297 + AT_rich Low_complexity Low_complexity 1 21 0 282 29 0 0 chr9 20937179 20937214 -121334230 + (TC)n Simple_repeat Simple_repeat 1 35 0 335 294 98 6 chr9 20937551 20937714 -121333730 + L1ME2 LINE L1 5987 6164 0 268 243 99 33 chr9 20938088 20938269 -121333175 + L1M3 LINE L1 4472 4664 -1482 304 307 66 21 chr9 20938424 20938711 -121332733 + L1M3 LINE L1 4860 5159 -987 2377 92 0 19 chr9 20938793 20939110 -121332334 + AluY SINE Alu 1 311 0 2171 108 30 0 chr9 20939157 20939453 -121331991 + AluSq SINE Alu 1 305 -8 267 283 108 0 chr9 20939517 20939620 -121331824 + L1M3 LINE L1 5467 5581 -590 1588 145 4 16 chr9 20940104 20940352 -121331092 - AluSx SINE Alu -67 245 1 2025 128 7 3 chr9 20940358 20940655 -121330789 - AluSx SINE Alu -13 299 2 1376 165 4 9 chr9 20940919 20941149 -121330295 - AluJo SINE Alu -83 229 1 248 258 30 0 chr9 20941710 20941776 -121329668 - L3 LINE CR1 -1081 496 429 481 249 91 10 chr9 20941956 20942153 -121329291 + L1MC4 LINE L1 7798 8010 -32 2138 111 13 10 chr9 20942167 20942474 -121328970 - AluSx SINE Alu -2 310 3 472 287 11 66 chr9 20942574 20942755 -121328689 - MER5A DNA MER1_type -1 188 18 939 97 0 15 chr9 20942939 20943073 -121328371 + FLAM_C SINE Alu 1 132 -1 338 344 37 25 chr9 20943628 20943791 -121327653 + MIR SINE MIR 21 185 -77 325 300 80 30 chr9 20944077 20944340 -121327104 - L1ME4a LINE L1 -169 5952 5677 325 242 16 102 chr9 20944392 20944520 -121326924 - L2 LINE L2 0 3313 3197 1613 166 19 4 chr9 20944597 20944862 -121326582 - AluJb SINE Alu -30 282 14 1717 156 35 0 chr9 20944902 20945190 -121326254 + AluJo SINE Alu 1 298 -14 754 273 17 0 chr9 20945683 20945855 -121325589 + MIR SINE MIR 19 193 -69 1765 124 39 0 chr9 20946570 20946827 -121324617 + AluSx SINE Alu 1 267 -45 402 290 75 0 chr9 20948607 20948714 -121322730 - L2 LINE L2 0 3272 3158 1172 233 61 3 chr9 20948882 20949178 -121322266 + MLT1A1 LTR MaLR 1 313 -52 1880 127 3 31 chr9 20949199 20949491 -121321953 + AluJb SINE Alu 2 285 -27 2102 101 32 0 chr9 20950452 20950730 -121320714 + AluSg1 SINE Alu 11 297 -12 341 253 146 0 chr9 20951146 20951324 -121320120 - L1ME4a LINE L1 -1 6120 5917 2199 107 16 16 chr9 20951396 20951569 -121319875 - AluSg SINE Alu -1 309 134 2460 76 3 0 chr9 20951569 20951870 -121319574 - AluY SINE Alu -9 302 1 2199 107 16 16 chr9 20951870 20952005 -121319439 - AluSg SINE Alu -175 135 1 3576 165 6 12 chr9 20952014 20952698 -121318746 - L1MB4 LINE L1 0 6180 5501 702 274 152 24 chr9 20952711 20953179 -121318265 + L2 LINE L2 1971 2498 -816 241 300 14 0 chr9 20954035 20954105 -121317339 - MIR SINE MIR -1 261 191 2370 101 0 0 chr9 20954250 20954557 -121316887 + AluSq SINE Alu 2 308 -5 1998 120 7 27 chr9 20954764 20955063 -121316381 + AluSq SINE Alu 1 293 -20 228 67 0 0 chr9 20955072 20955102 -121316342 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 919 250 134 67 chr9 20955105 20955372 -121316072 - L1MEd LINE L1 -4865 1254 1006 2050 146 0 3 chr9 20955372 20955673 -121315771 - AluSx SINE Alu -12 300 1 919 250 134 67 chr9 20955673 20956108 -121315336 - L1MEd LINE L1 -5113 1006 505 2314 99 0 0 chr9 20957249 20957543 -121313901 - AluY SINE Alu -13 298 5 249 274 0 0 chr9 20958154 20958238 -121313206 + (TATATG)n Simple_repeat Simple_repeat 3 86 0 1625 183 0 15 chr9 20958252 20958520 -121312924 - AluJb SINE Alu -48 264 1 421 213 8 90 chr9 20958525 20958647 -121312797 - MER101 LTR ERV1 -250 224 113 1359 196 26 26 chr9 20958647 20958793 -121312651 - AluJb SINE Alu -47 265 115 2340 70 0 7 chr9 20958793 20959099 -121312345 + AluSq SINE Alu 1 304 0 1359 196 26 26 chr9 20959099 20959215 -121312229 - AluJb SINE Alu -196 116 1 24 67 0 0 chr9 20959221 20959266 -121312178 + AT_rich Low_complexity Low_complexity 1 45 0 509 188 0 0 chr9 20959379 20959459 -121311985 - AluS SINE Alu -233 80 1 548 254 99 6 chr9 20959520 20959701 -121311743 + MIR SINE MIR 8 205 -57 1812 90 0 4 chr9 20959806 20960040 -121311404 + AluSg1 SINE Alu 1 233 -76 1867 109 27 51 chr9 20960064 20960378 -121311066 - AluSq SINE Alu 0 307 1 2145 118 7 7 chr9 20960380 20960684 -121310760 - AluSg SINE Alu -6 304 1 2331 93 3 0 chr9 20961020 20961320 -121310124 - AluSp SINE Alu -12 301 1 716 210 0 0 chr9 20961916 20962040 -121309404 - FLAM_A SINE Alu -10 132 9 490 265 184 14 chr9 20962068 20962291 -121309153 - L2 LINE L2 -4 3309 3049 1039 66 22 7 chr9 20962291 20962427 -121309017 + AluSg/x SINE Alu 160 297 -13 180 231 77 0 chr9 20962480 20962519 -121308925 + L2 LINE L2 3263 3304 -9 352 284 115 33 chr9 20962998 20963181 -121308263 + L2 LINE L2 2849 3046 -267 1118 68 0 0 chr9 20963243 20963375 -121308069 + AluSp SINE Alu 1 132 -181 2201 99 0 0 chr9 20963377 20963660 -121307784 + AluSx SINE Alu 1 283 -29 387 0 0 0 chr9 20963663 20963706 -121307738 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 2274 113 0 0 chr9 20963728 20964030 -121307414 + AluSq SINE Alu 1 302 -11 385 248 228 0 chr9 20964067 20964168 -121307276 - MIR SINE MIR -104 158 35 285 238 66 15 chr9 20964656 20964744 -121306700 - MIR SINE MIR -91 117 21 251 36 0 0 chr9 20965005 20965033 -121306411 - U6 snRNA snRNA -79 28 1 2001 138 3 3 chr9 20965418 20965715 -121305729 - AluSx SINE Alu -15 297 1 1653 168 58 0 chr9 20965741 20966015 -121305429 - AluJb SINE Alu -21 291 2 882 174 13 0 chr9 20966064 20966213 -121305231 - FRAM SINE Alu -18 158 8 791 234 41 0 chr9 20966507 20966678 -121304766 - MER5B DNA MER1_type 0 178 1 1712 186 51 51 chr9 20966917 20967348 -121304096 - MLT1D LTR MaLR 0 505 75 904 161 56 0 chr9 20967348 20967491 -121303953 - AluSg/x SINE Alu -22 290 140 294 125 0 0 chr9 20967491 20967539 -121303905 + Alu SINE Alu 252 299 -3 2372 95 0 0 chr9 20967543 20967849 -121303595 + AluSg1 SINE Alu 1 306 -3 2253 224 12 31 chr9 20967858 20968198 -121303246 + MER82 DNA MER2_type 180 510 -143 2360 60 13 20 chr9 20968198 20968499 -121302945 - AluY SINE Alu -12 299 1 2253 224 12 31 chr9 20968499 20968641 -121302803 + MER82 DNA MER2_type 510 653 0 259 182 0 0 chr9 20968662 20968706 -121302738 + L2 LINE L2 3265 3308 -5 1637 175 11 0 chr9 20968717 20968985 -121302459 + AluJb SINE Alu 1 271 -41 887 207 12 6 chr9 20969030 20969199 -121302245 + FRAM SINE Alu 1 167 -9 2243 111 7 0 chr9 20969201 20969508 -121301936 + AluSx SINE Alu 1 309 -3 585 207 78 52 chr9 20969509 20969634 -121301810 + L1MC5 LINE L1 7702 7835 -126 2257 109 10 0 chr9 20969634 20969936 -121301508 + AluSx SINE Alu 1 305 -7 585 207 78 52 chr9 20969936 20970003 -121301441 + L1MC5 LINE L1 7835 7899 -62 21 0 0 0 chr9 20970018 20970039 -121301405 + AT_rich Low_complexity Low_complexity 1 21 0 2436 87 0 0 chr9 20970039 20970338 -121301106 - AluSc SINE Alu -10 299 1 1595 186 0 42 chr9 20970370 20970682 -121300762 - AluJo SINE Alu -11 301 3 2347 105 3 3 chr9 20971035 20971348 -121300096 + AluSq SINE Alu 1 313 0 361 288 16 24 chr9 20972107 20972232 -121299212 + MIR3 SINE MIR 82 205 -3 288 181 136 136 chr9 20972252 20972429 -121299015 - L1MC5 LINE L1 -36 7925 7749 2333 64 10 0 chr9 20972505 20972802 -121298642 + AluY SINE Alu 1 300 -11 1089 221 19 0 chr9 20972986 20973199 -121298245 - MLT1F1 LTR MaLR 0 567 351 541 260 24 112 chr9 20973216 20973466 -121297978 - MLT1F1 LTR MaLR -314 228 1 245 214 146 48 chr9 20973546 20973649 -121297795 - MIR SINE MIR -108 154 42 24 0 0 0 chr9 20973652 20973676 -121297768 + AT_rich Low_complexity Low_complexity 1 24 0 1885 159 7 3 chr9 20973677 20973972 -121297472 - AluJb SINE Alu -16 296 1 506 208 0 21 chr9 20974149 20974245 -121297199 - AluJ/FLAM SINE Alu -217 95 2 1802 147 0 4 chr9 20974268 20974527 -121296917 + AluSq SINE Alu 1 258 -55 2432 82 0 3 chr9 20975355 20975658 -121295786 + AluY SINE Alu 1 302 -9 1317 122 0 0 chr9 20975660 20975848 -121295596 + AluSg/x SINE Alu 125 312 0 957 199 0 20 chr9 20975851 20976047 -121295397 - L1M4 LINE L1 -1063 5083 4892 683 136 0 39 chr9 20976048 20976151 -121295293 + AluJ/FLAM SINE Alu 2 100 -212 2440 89 0 0 chr9 20976153 20976466 -121294978 - AluSq SINE Alu 0 313 1 24 0 0 29 chr9 20976731 20976745 -121294699 + AT_rich Low_complexity Low_complexity 1 14 -20 1959 155 0 3 chr9 20976745 20977035 -121294409 - AluSx SINE Alu -23 289 1 24 0 0 29 chr9 20977035 20977055 -121294389 + AT_rich Low_complexity Low_complexity 14 34 0 1526 144 0 100 chr9 20977057 20977376 -121294068 + AluJb SINE Alu 1 287 -25 228 35 0 0 chr9 20977376 20977405 -121294039 + (TA)n Simple_repeat Simple_repeat 1 29 0 1242 213 55 55 chr9 20977799 20978090 -121293354 + AluJo SINE Alu 1 291 -11 22 35 0 0 chr9 20978137 20978166 -121293278 + AT_rich Low_complexity Low_complexity 1 29 0 2525 74 3 0 chr9 20978267 20978579 -121292865 - AluSp SINE Alu 0 313 1 318 268 79 116 chr9 20980205 20980646 -121290798 + L1M2 LINE L1 485 909 -5940 229 305 0 0 chr9 20980986 20981045 -121290399 + A-rich Low_complexity Low_complexity 1 59 0 2093 131 3 0 chr9 20981121 20981412 -121290032 - AluSq SINE Alu -21 292 1 260 270 10 20 chr9 20981413 20981513 -121289931 - L1M4 LINE L1 -2792 3354 3256 2749 211 33 24 chr9 20981531 20981927 -121289517 - L1M4 LINE L1 -2967 3179 2771 2016 104 3 69 chr9 20981927 20982245 -121289199 - AluSx SINE Alu -15 297 1 2749 211 33 24 chr9 20982245 20982569 -121288875 - L1M4 LINE L1 -3375 2771 2452 3023 131 43 124 chr9 20982569 20982847 -121288597 - Tigger3b DNA MER2_type -1797 1231 932 2257 121 0 0 chr9 20982847 20983144 -121288300 + AluSg SINE Alu 3 299 -11 1914 127 15 0 chr9 20983144 20983411 -121288033 + AluSx SINE Alu 1 271 -41 3023 131 43 124 chr9 20983411 20983835 -121287609 - Tigger3b DNA MER2_type -2094 934 585 667 138 0 0 chr9 20983845 20983939 -121287505 - FLAM_A SINE Alu -16 126 33 1184 136 149 9 chr9 20983959 20984187 -121287257 - Tigger3b DNA MER2_type -635 596 337 808 144 8 0 chr9 20984204 20984322 -121287122 + FLAM_C SINE Alu 10 128 -15 667 172 0 0 chr9 20984369 20984468 -121286976 + AluJ/FLAM SINE Alu 2 100 -212 3110 191 28 16 chr9 20984468 20985105 -121286339 - L1MC3 LINE L1 -1708 6077 5433 2211 127 0 0 chr9 20985106 20985413 -121286031 - AluSg SINE Alu -3 307 1 1952 168 5 32 chr9 20985424 20985798 -121285646 - L1MB8 LINE L1 -1 6177 5814 2190 197 56 24 chr9 20985802 20986270 -121285174 - L1MB5 LINE L1 -6 6168 5686 1152 196 5 14 chr9 20986272 20986491 -121284953 - AluJb SINE Alu -13 299 83 2392 88 0 0 chr9 20986491 20986788 -121284656 - AluSg SINE Alu -13 297 1 265 333 90 19 chr9 20986871 20987021 -121284423 + MIR3 SINE MIR 19 180 -23 1901 152 10 0 chr9 20987021 20987330 -121284114 + AluJb SINE Alu 1 312 0 183 298 35 18 chr9 20987859 20987916 -121283528 + MIR3 SINE MIR 120 177 -31 1336 257 136 8 chr9 20987925 20988403 -121283041 + L1MC4a LINE L1 5898 6436 -1372 * 2897 255 65 16 chr9 20988397 20989296 -121282148 + L1MC4 LINE L1 6687 7629 -413 989 217 96 32 chr9 20989307 20989643 -121281801 + L1MC4 LINE L1 7688 7990 -5 192 231 0 0 chr9 20992417 20992469 -121278975 + (TA)n Simple_repeat Simple_repeat 2 53 0 5064 129 39 32 chr9 20992469 20993391 -121278053 + L1MA8 LINE L1 5354 6281 -10 34 0 0 0 chr9 20993391 20993425 -121278019 + AT_rich Low_complexity Low_complexity 1 34 0 2233 112 16 0 chr9 20993811 20994114 -121277330 + AluSx SINE Alu 1 308 -4 1761 146 7 21 chr9 20994281 20994601 -121276843 + AluSq SINE Alu 1 316 0 318 265 31 10 chr9 20994866 20994964 -121276480 + MIR SINE MIR 115 214 -48 334 167 118 78 chr9 20994969 20995071 -121276373 - MIR SINE MIR -12 250 145 822 170 165 32 chr9 20995076 20995264 -121276180 + MER20 DNA MER1_type 1 213 -6 1527 168 19 23 chr9 20995316 20995578 -121275866 + AluJo SINE Alu 1 261 -51 48 18 0 0 chr9 20995583 20995638 -121275806 + AT_rich Low_complexity Low_complexity 1 55 0 779 148 31 0 chr9 20995733 20995861 -121275583 + FLAM_C SINE Alu 2 133 0 306 151 0 82 chr9 20995894 20995967 -121275477 + AluJ/FRAM SINE Alu 229 295 -7 1680 153 28 56 chr9 20995970 20996290 -121275154 + AluSx SINE Alu 1 311 -1 2241 109 0 0 chr9 20997131 20997424 -121274020 + AluSc SINE Alu 1 293 -16 2238 110 0 19 chr9 20997554 20997864 -121273580 - AluSq SINE Alu -9 304 1 2392 99 0 3 chr9 20997994 20998298 -121273146 + AluSc SINE Alu 1 303 -6 3760 193 43 4 chr9 20998839 20999576 -121271868 + L1MB8 LINE L1 5402 6167 -11 2228 93 3 3 chr9 20999576 20999865 -121271579 - AluSp SINE Alu -24 289 1 543 122 0 0 chr9 20999920 21000010 -121271434 + (TAGA)n Simple_repeat Simple_repeat 3 92 0 2200 111 3 0 chr9 21000011 21000300 -121271144 - AluSq SINE Alu -23 290 1 348 311 64 38 chr9 21000994 21001261 -121270183 - L1ME LINE L1 -315 5806 5533 330 224 184 8 chr9 21001673 21001798 -121269646 + L1ME4a LINE L1 5715 5861 -260 199 135 0 39 chr9 21001847 21001899 -121269545 + (CATA)n Simple_repeat Simple_repeat 1 50 0 23 92 0 0 chr9 21003468 21003533 -121267911 + AT_rich Low_complexity Low_complexity 1 65 0 1616 192 14 4 chr9 21003615 21003896 -121267548 + AluJo SINE Alu 1 284 -28 2061 129 73 15 chr9 21004409 21004749 -121266695 - MER46B DNA MER2_type -1 235 1 617 329 97 84 chr9 21004815 21005186 -121266258 + L2 LINE L2 354 719 -2595 2216 99 17 0 chr9 21005186 21005479 -121265965 - AluSx SINE Alu -14 298 1 899 148 0 8 chr9 21005481 21005609 -121265835 - AluJo/FLAM SINE Alu -175 127 1 617 329 97 84 chr9 21005609 21005880 -121265564 + L2 LINE L2 719 985 -2329 2054 77 107 0 chr9 21005880 21006152 -121265292 - AluY SINE Alu -10 301 1 617 329 97 84 chr9 21006152 21006782 -121264662 + L2 LINE L2 985 1651 -1663 2169 104 45 0 chr9 21006782 21007070 -121264374 - AluSx SINE Alu -11 301 1 617 329 97 84 chr9 21007070 21007130 -121264314 + L2 LINE L2 1651 1709 -1605 198 0 0 0 chr9 21007132 21007154 -121264290 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 398 315 95 82 chr9 21007154 21007618 -121263826 + L2 LINE L2 2349 2818 -496 236 114 0 0 chr9 21007780 21007815 -121263629 + L1MC5 LINE L1 7193 7227 -734 271 276 17 43 chr9 21007891 21008007 -121263437 + L1MC4 LINE L1 7383 7495 -547 257 159 45 0 chr9 21007974 21008018 -121263426 + L1MC5 LINE L1 7292 7337 -624 * 552 210 30 36 chr9 21008018 21008134 -121263310 + MER33 DNA MER1_type 1 116 -2508 2155 118 3 3 chr9 21008134 21008430 -121263014 + AluSx SINE Alu 1 296 -16 552 210 30 36 chr9 21008430 21008592 -121262852 + MER33 DNA MER1_type 116 361 -2 993 147 0 0 chr9 21009170 21009340 -121262104 + (TA)n Simple_repeat Simple_repeat 1 170 0 330 278 22 0 chr9 21009358 21009448 -121261996 + L1MC4 LINE L1 6612 6703 -1339 2203 107 17 0 chr9 21009457 21009746 -121261698 - AluSq SINE Alu -19 294 1 1851 155 49 9 chr9 21009746 21010094 -121261350 + MLT1B LTR MaLR 26 387 -3 352 264 157 34 chr9 21010182 21010284 -121261160 - MIR SINE MIR -27 235 147 2286 110 0 7 chr9 21010284 21010592 -121260852 - AluSq SINE Alu -3 310 5 352 264 157 34 chr9 21010592 21010667 -121260777 - MIR SINE MIR -115 147 36 771 172 8 15 chr9 21011313 21011447 -121259997 + FLAM_C SINE Alu 1 133 0 1771 87 0 0 chr9 21012708 21012926 -121258518 + AluSg/x SINE Alu 82 299 -13 332 272 0 22 chr9 21013044 21013136 -121258308 - L1MC4 LINE L1 -1339 6703 6614 325 299 222 11 chr9 21013180 21013441 -121258003 + L1MEd LINE L1 38 353 -5766 2365 82 20 0 chr9 21013449 21013753 -121257691 - AluSx SINE Alu -2 310 1 1324 61 0 99 chr9 21014058 21014195 -121257249 - L1PB1 LINE L1 -1 6150 6040 2008 98 0 0 chr9 21014195 21014460 -121256984 - AluY SINE Alu -46 265 1 1324 61 0 99 chr9 21014460 21014535 -121256909 - L1PB1 LINE L1 -111 6040 5959 919 211 0 0 chr9 21014535 21014701 -121256743 - AluSg/x SINE Alu -14 298 133 265 91 23 0 chr9 21014701 21014745 -121256699 - L1PB2 LINE L1 -178 5973 5929 * 437 325 55 10 chr9 21014741 21014941 -121256503 + L1MEd LINE L1 423 631 -5488 435 289 31 8 chr9 21015168 21015296 -121256148 + MIR SINE MIR 61 191 -71 339 222 44 0 chr9 21015297 21015387 -121256057 - HsTC2 DNA Tc2 0 1898 1805 677 235 138 77 chr9 21016078 21016230 -121255214 - L1MC4 LINE L1 -1797 6011 5870 2012 151 3 0 chr9 21016230 21016535 -121254909 + AluSx SINE Alu 1 306 -6 677 235 138 77 chr9 21016535 21017080 -121254364 - L1MC4 LINE L1 -1938 5870 5272 2005 133 7 20 chr9 21017207 21017509 -121253935 + AluSx SINE Alu 1 298 -14 23 54 0 0 chr9 21017552 21017589 -121253855 + AT_rich Low_complexity Low_complexity 1 37 0 240 211 169 134 chr9 21017648 21017846 -121253598 + L1ME LINE L1 3699 3911 -2235 415 188 73 10 chr9 21017846 21017942 -121253502 - U13 snRNA snRNA -2 102 1 240 211 169 134 chr9 21017942 21018027 -121253417 + L1ME LINE L1 3911 3992 -2154 1064 184 5 0 chr9 21018057 21018247 -121253197 - MER58A DNA MER1_type -1 223 33 526 276 103 66 chr9 21018271 21018785 -121252659 + L1ME LINE L1 4030 4576 -1570 417 170 30 0 chr9 21018785 21018885 -121252559 + L1MA7 LINE L1 6184 6286 -5 526 276 103 66 chr9 21018885 21019037 -121252407 + L1ME LINE L1 4576 4721 -1425 1183 157 105 62 chr9 21019074 21019193 -121252251 - L1MB8 LINE L1 -1 6177 6065 2274 107 3 0 chr9 21019193 21019491 -121251953 - AluSp SINE Alu -14 299 1 1183 157 105 62 chr9 21019491 21019695 -121251749 - L1MB8 LINE L1 -113 6065 5840 787 273 75 20 chr9 21019938 21020537 -121250907 + L1ME LINE L1 5120 5757 -405 28 29 0 0 chr9 21020645 21020680 -121250764 + AT_rich Low_complexity Low_complexity 1 35 0 2425 92 0 0 chr9 21020840 21021144 -121250300 - AluSx SINE Alu -8 304 1 1831 168 13 0 chr9 21021211 21021514 -121249930 - AluJb SINE Alu -3 309 3 1931 125 0 21 chr9 21021549 21021886 -121249558 + AluSx SINE Alu 2 332 0 22 35 0 0 chr9 21023703 21023732 -121247712 + AT_rich Low_complexity Low_complexity 1 29 0 2352 62 0 42 chr9 21023781 21024088 -121247356 + AluY SINE Alu 1 294 -17 2148 126 3 0 chr9 21024146 21024440 -121247004 + AluSx SINE Alu 1 295 -17 602 153 0 10 chr9 21024645 21024743 -121246701 + FLAM_C SINE Alu 29 125 -18 30 45 0 0 chr9 21024743 21024787 -121246657 + AT_rich Low_complexity Low_complexity 1 44 0 331 348 71 0 chr9 21024973 21025085 -121246359 - L2 LINE L2 -3 3310 3191 907 180 87 0 chr9 21025092 21025275 -121246169 - MER58A DNA MER1_type -5 219 21 755 289 26 64 chr9 21025302 21025357 -121246087 - L2 LINE L2 -118 3195 3139 1296 171 8 4 chr9 21025357 21025591 -121245853 + MER46A DNA MER2_type 1 235 -1 755 289 26 64 chr9 21025591 21025983 -121245461 - L2 LINE L2 -174 3139 2760 2261 93 0 7 chr9 21026686 21026975 -121244469 - AluSc SINE Alu -22 287 1 524 263 15 30 chr9 21027177 21027310 -121244134 - L2 LINE L2 0 3313 3183 214 200 0 25 chr9 21027379 21027419 -121244025 + L2 LINE L2 2776 2814 -500 2277 99 7 0 chr9 21027437 21027729 -121243715 - AluSp SINE Alu -16 297 4 232 200 67 0 chr9 21027739 21027784 -121243660 - L2 LINE L2 -541 2773 2726 332 320 132 25 chr9 21028643 21028840 -121242604 - L2 LINE L2 -219 3053 2836 242 299 86 78 chr9 21028863 21029107 -121242337 - L2 LINE L2 -602 2712 2467 306 223 116 18 chr9 21029868 21029980 -121241464 + MER5C DNA MER1_type 1 123 -201 185 171 0 0 chr9 21030091 21030126 -121241318 + MER5C DNA MER1_type 272 306 -18 24 32 0 0 chr9 21030578 21030609 -121240835 + AT_rich Low_complexity Low_complexity 1 31 0 2102 101 32 0 chr9 21031987 21032265 -121239179 + AluSg1 SINE Alu 11 297 -12 341 253 146 0 chr9 21032681 21032859 -121238585 - L1ME4a LINE L1 -1 6120 5917 2199 107 16 16 chr9 21032931 21033104 -121238340 - AluSg SINE Alu -1 309 134 2460 76 3 0 chr9 21033104 21033405 -121238039 - AluY SINE Alu -9 302 1 2199 107 16 16 chr9 21033405 21033540 -121237904 - AluSg SINE Alu -175 135 1 3576 165 6 12 chr9 21033549 21034233 -121237211 - L1MB4 LINE L1 0 6180 5501 657 274 154 24 chr9 21034246 21034713 -121236731 + L2 LINE L2 1971 2498 -816 241 300 14 0 chr9 21035569 21035639 -121235805 - MIR SINE MIR -1 261 191 2370 101 0 0 chr9 21035784 21036091 -121235353 + AluSq SINE Alu 2 308 -5 1998 120 7 27 chr9 21036298 21036597 -121234847 + AluSq SINE Alu 1 293 -20 228 67 0 0 chr9 21036606 21036636 -121234808 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 919 250 134 67 chr9 21036639 21036906 -121234538 - L1MEd LINE L1 -4865 1254 1006 2050 146 0 3 chr9 21036906 21037207 -121234237 - AluSx SINE Alu -12 300 1 919 250 134 67 chr9 21037207 21037642 -121233802 - L1MEd LINE L1 -5113 1006 505 2400 94 0 0 chr9 21038783 21039082 -121232362 - AluSx SINE Alu -13 299 1 25 0 0 0 chr9 21039133 21039158 -121232286 + AT_rich Low_complexity Low_complexity 1 25 0 2137 93 3 17 chr9 21040599 21040889 -121230555 + AluSc SINE Alu 5 290 -19 327 194 0 0 chr9 21040913 21040980 -121230464 + AluJo/FLAM SINE Alu 61 127 -175 1555 139 128 19 chr9 21040982 21041248 -121230196 + AluSg SINE Alu 1 295 -15 231 36 0 0 chr9 21041255 21041283 -121230161 + (TGAA)n Simple_repeat Simple_repeat 3 30 0 230 157 0 20 chr9 21041889 21041940 -121229504 + (CATA)n Simple_repeat Simple_repeat 2 51 0 285 202 164 0 chr9 21042276 21042380 -121229064 + L1MD1 LINE L1 4454 4574 -1572 1674 235 46 26 chr9 21042455 21043022 -121228422 + L1MD1 LINE L1 4543 5120 -1026 1554 153 19 34 chr9 21043023 21043343 -121228101 + L1MB8 LINE L1 5862 6176 -2 346 333 133 24 chr9 21043533 21043908 -121227536 + L1MC4a LINE L1 4918 5333 -813 1337 271 55 4 chr9 21043957 21044445 -121226999 + L1MC4a LINE L1 5426 5938 -1870 1850 125 58 0 chr9 21044734 21045029 -121226415 + AluSp SINE Alu 1 312 -1 504 165 52 0 chr9 21045082 21045179 -121226265 + Tigger3b DNA MER2_type 1 102 -1129 * 1253 94 69 0 chr9 21045177 21045380 -121226064 + Tigger3b DNA MER2_type 274 490 -741 607 186 52 31 chr9 21045517 21045711 -121225733 + L1MD1 LINE L1 5757 5954 -288 518 15 30 0 chr9 21046089 21046155 -121225289 + (TTCC)n Simple_repeat Simple_repeat 4 71 0 2118 117 13 7 chr9 21046166 21046466 -121224978 - AluSx SINE Alu -10 302 1 2375 66 10 0 chr9 21046696 21046985 -121224459 - AluY SINE Alu -16 295 4 280 194 30 0 chr9 21047313 21047380 -121224064 - MLT1K LTR MaLR -7 581 513 2183 123 0 0 chr9 21048693 21048986 -121222458 - AluSx SINE Alu -19 293 1 2302 90 7 0 chr9 21049141 21049429 -121222015 - AluSp SINE Alu -23 290 1 552 212 83 16 chr9 21049445 21049638 -121221806 - L1MC5 LINE L1 -44 7917 7712 206 227 0 0 chr9 21049644 21049688 -121221756 + CT-rich Low_complexity Low_complexity 2 45 0 774 237 71 9 chr9 21049695 21049966 -121221478 - L1ME1 LINE L1 -2 6164 5881 487 186 156 18 chr9 21050087 21050254 -121221190 - L1MC5 LINE L1 -412 7549 7360 634 158 20 0 chr9 21050263 21050364 -121221080 + MER5A DNA MER1_type 10 112 -77 224 218 276 11 chr9 21050288 21050375 -121221069 - MER5A DNA MER1_type -23 166 57 * 2182 104 21 0 chr9 21050390 21050679 -121220765 + AluSx SINE Alu 1 295 -17 442 228 41 99 chr9 21051313 21051370 -121220074 - MLT1I LTR MaLR -23 386 327 2507 75 0 0 chr9 21051370 21051675 -121219769 - AluY SINE Alu -6 305 1 442 228 41 99 chr9 21051675 21051788 -121219656 - MLT1I LTR MaLR -82 327 226 2132 114 60 23 chr9 21051867 21052218 -121219226 + THE1B LTR MaLR 1 364 0 475 312 55 96 chr9 21052344 21052636 -121218808 + L2 LINE L2 2991 3270 -2 1384 143 5 19 chr9 21052755 21052965 -121218479 + AluSx SINE Alu 1 207 -105 216 0 0 0 chr9 21052997 21053021 -121218423 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 340 326 26 47 chr9 21053072 21053262 -121218182 + L2 LINE L2 2896 3081 -191 4292 73 26 16 chr9 21053354 21054376 -121217068 + MER11A LTR ERVK 1 1266 0 528 80 0 40 chr9 21054433 21054508 -121216936 + tRNA-Met-i tRNA tRNA 1 72 -3 663 141 116 16 chr9 21054521 21054642 -121216802 + FLAM_C SINE Alu 1 133 0 689 227 27 0 chr9 21054952 21055102 -121216342 - MER5A DNA MER1_type -12 177 24 24 32 0 0 chr9 21055581 21055612 -121215832 + AT_rich Low_complexity Low_complexity 1 31 0 1716 181 17 20 chr9 21055668 21055967 -121215477 + AluJb SINE Alu 1 298 -14 2173 232 62 19 chr9 21056191 21056824 -121214620 + HsTC2a DNA Tc2 4 663 -81 2073 124 23 0 chr9 21056829 21057128 -121214316 - AluSx SINE Alu -6 306 1 566 161 69 8 chr9 21057144 21057274 -121214170 - Charlie1 DNA MER1_type 0 2761 2624 623 156 9 0 chr9 21057279 21057388 -121214056 - Charlie1 DNA MER1_type -2541 220 111 2341 48 0 20 chr9 21057629 21057921 -121213523 - AluY SINE Alu -25 286 1 247 269 41 26 chr9 21058542 21058685 -121212759 + MIR SINE MIR 14 231 -31 238 280 112 49 chr9 21060643 21060786 -121210658 - MIR3 SINE MIR -32 176 25 1682 150 39 4 chr9 21060863 21061143 -121210301 + AluJo SINE Alu 1 290 -22 725 146 131 0 chr9 21061833 21061970 -121209474 - AluSg/x SINE Alu -21 291 137 340 341 61 8 chr9 21062334 21062466 -121208978 - MIR SINE MIR -90 172 34 2135 108 0 13 chr9 21062806 21063111 -121208333 + AluSx SINE Alu 1 301 -11 500 225 35 35 chr9 21063161 21063330 -121208114 - L1MC4a LINE L1 -1899 5909 5741 7008 58 12 16 chr9 21063559 21065165 -121206279 - SVA Other Other -683 1386 60 269 103 0 0 chr9 21065166 21065205 -121206239 - Alu SINE Alu -5 303 265 1170 136 6 0 chr9 21065997 21066173 -121205271 + AluSg/x SINE Alu 121 297 -13 2413 74 0 0 chr9 21066173 21066482 -121204962 + AluY SINE Alu 1 309 -2 664 183 38 23 chr9 21066491 21066622 -121204822 - FLAM_C SINE Alu 0 133 1 194 300 22 11 chr9 21066622 21066705 -121204739 + L2 LINE L2 1818 1904 -1410 432 256 62 74 chr9 21066847 21067253 -121204191 - L1ME4a LINE L1 -71 6050 5650 276 373 22 0 chr9 21068075 21068209 -121203235 + L2 LINE L2 2918 3054 -218 550 301 102 14 chr9 21068488 21068704 -121202740 + MIR SINE MIR 22 256 -6 976 201 0 0 chr9 21069191 21069355 -121202089 - FRAM SINE Alu -2 164 1 1287 95 5 26 chr9 21069750 21069939 -121201505 - AluSg/x SINE Alu -16 296 112 1079 323 65 50 chr9 21069955 21070091 -121201353 + L2 LINE L2 1656 1788 -1526 1798 129 0 31 chr9 21070091 21070378 -121201066 + AluSg SINE Alu 1 278 -32 1079 323 65 50 chr9 21070378 21070732 -121200712 + L2 LINE L2 1788 2135 -1179 2039 168 19 14 chr9 21070732 21071095 -121200349 + MLT1A1 LTR MaLR 1 365 0 1079 323 65 50 chr9 21071095 21071430 -121200014 + L2 LINE L2 2135 2495 -819 2053 116 3 13 chr9 21071442 21071753 -121199691 - AluSc SINE Alu -1 308 1 330 250 55 31 chr9 21072040 21072168 -121199276 + L2 LINE L2 3117 3247 -66 1937 96 0 67 chr9 21073243 21073420 -121198024 - AluSc SINE Alu -17 292 143 2251 79 0 19 chr9 21073420 21073736 -121197708 - AluY SINE Alu 0 311 2 1937 96 0 67 chr9 21073736 21073871 -121197573 - AluSc SINE Alu -166 143 1 267 273 136 11 chr9 21073950 21074038 -121197406 - L2 LINE L2 0 3272 3174 1783 125 7 4 chr9 21074054 21074353 -121197091 - AluSx SINE Alu 0 309 10 1232 87 34 166 chr9 21074466 21074623 -121196821 + MER30 DNA MER1_type 1 111 -119 2375 38 3 3 chr9 21074623 21074915 -121196529 - AluY SINE Alu -18 293 2 1232 87 34 166 chr9 21074915 21075022 -121196422 + MER30 DNA MER1_type 111 230 0 784 238 353 22 chr9 21075703 21076650 -121194794 - L2 LINE L2 0 3313 2038 238 263 100 12 chr9 21077267 21077347 -121194097 - MIR3 SINE MIR -39 169 83 388 230 62 0 chr9 21077958 21078071 -121193373 - L1ME2 LINE L1 -10 6154 6035 253 266 88 86 chr9 21078196 21078410 -121193034 - L1ME4a LINE L1 0 6121 5909 1582 171 0 23 chr9 21078410 21078719 -121192725 - AluJb SINE Alu -10 302 1 253 266 88 86 chr9 21078719 21078982 -121192462 - L1ME4a LINE L1 -212 5909 5643 382 343 95 44 chr9 21078987 21079261 -121192183 - L1ME4a LINE L1 -532 5589 5302 2014 107 35 0 chr9 21079264 21079554 -121191890 + AluY SINE Alu 1 300 -11 337 206 32 40 chr9 21079646 21079772 -121191672 - L1MC5 LINE L1 -65 7896 7772 312 295 60 81 chr9 21079776 21080007 -121191437 - L1ME4a LINE L1 -865 5281 5056 2189 93 0 26 chr9 21080007 21080317 -121191127 + AluSx SINE Alu 1 302 -10 312 295 60 81 chr9 21080317 21080370 -121191074 - L1ME4a LINE L1 -1090 5056 5003 302 303 81 38 chr9 21081185 21081370 -121190074 - L1M4 LINE L1 -865 5281 5089 1776 148 7 3 chr9 21083050 21083341 -121188103 - AluJb SINE Alu -20 292 1 270 0 0 0 chr9 21083593 21083623 -121187821 + (T)n Simple_repeat Simple_repeat 1 30 0 207 235 0 44 chr9 21083668 21083736 -121187708 - L2 LINE L2 -906 2408 2344 450 241 83 0 chr9 21083830 21083963 -121187481 - L1ME4a LINE L1 -13 6108 5965 2003 123 0 10 chr9 21085716 21086017 -121185427 + AluSx SINE Alu 1 298 -14 1828 168 0 0 chr9 21086201 21086505 -121184939 + AluJb SINE Alu 3 306 -6 1135 183 64 0 chr9 21086655 21086874 -121184570 + MER46A DNA MER2_type 2 234 -2 1062 206 109 29 chr9 21088265 21088576 -121182868 + MER2 DNA MER2_type 3 338 -7 825 196 0 0 chr9 21088620 21088793 -121182651 - FAM SINE Alu -4 45 1 206 343 0 0 chr9 21089268 21089338 -121182106 - MIR SINE MIR -56 206 137 337 301 0 0 chr9 21089531 21089604 -121181840 - MER2 DNA MER2_type 0 345 273 21 0 0 0 chr9 21089753 21089774 -121181670 + AT_rich Low_complexity Low_complexity 1 21 0 21 89 0 0 chr9 21091726 21091782 -121179662 + GC_rich Low_complexity Low_complexity 1 56 0 621 151 83 135 chr9 21091791 21091886 -121179558 - MER2 DNA MER2_type -113 232 150 2293 106 0 0 chr9 21091886 21092198 -121179246 + AluSx SINE Alu 1 312 0 621 151 83 135 chr9 21092198 21092294 -121179150 - MER2 DNA MER2_type -195 150 51 1495 169 51 4 chr9 21092582 21092855 -121178589 - AluJo SINE Alu -26 286 1 266 311 40 70 chr9 21092974 21093202 -121178242 + L2 LINE L2 2684 2904 -410 1118 165 55 84 chr9 21093237 21093606 -121177838 - MLT1B LTR MaLR -16 374 6 2875 91 68 127 chr9 21094161 21094721 -121176723 - MER1A DNA MER1_type 0 527 1 216 111 0 0 chr9 21094926 21094962 -121176482 + (TG)n Simple_repeat Simple_repeat 2 37 0 31 58 0 0 chr9 21095358 21095410 -121176034 + GC_rich Low_complexity Low_complexity 1 52 0 501 155 17 95 chr9 21095878 21095994 -121175450 - MER20 DNA MER1_type -112 107 1 425 215 43 134 chr9 21096287 21096496 -121174948 - MIR3 SINE MIR -14 194 5 824 185 35 4 chr9 21096553 21096730 -121174714 - MLT1F LTR MaLR -17 525 371 1816 161 0 3 chr9 21096737 21097035 -121174409 + AluJb SINE Alu 1 297 -15 468 175 12 0 chr9 21097059 21097139 -121174305 + MIR SINE MIR 108 188 -74 949 281 78 41 chr9 21097152 21097587 -121173857 + MLT1J LTR MaLR 1 451 -60 1881 117 48 7 chr9 21097592 21097883 -121173561 + AluSx SINE Alu 1 303 -9 279 213 40 27 chr9 21097931 21098006 -121173438 + MLT1J LTR MaLR 427 502 -9 209 152 109 0 chr9 21098153 21098199 -121173245 + MIR SINE MIR 19 69 -139 1652 200 3 7 chr9 21098226 21098531 -121172913 - AluJb SINE Alu -8 304 1 302 277 90 58 chr9 21099381 21099569 -121171875 - L1M4 LINE L1 -830 5316 5123 345 218 40 50 chr9 21099603 21099704 -121171740 - MIR SINE MIR -36 226 127 370 214 16 137 chr9 21100546 21100728 -121170716 + L2 LINE L2 2925 3084 -188 305 297 103 22 chr9 21100881 21101066 -121170378 + MIR SINE MIR 36 235 -27 470 268 39 16 chr9 21101176 21101303 -121170141 + L2 LINE L2 3184 3313 0 737 189 142 6 chr9 21101807 21101976 -121169468 + MER3 DNA MER1_type 1 192 -17 394 327 18 0 chr9 21103143 21103253 -121168191 + MIR SINE MIR 36 147 -61 1115 228 58 102 chr9 21103275 21103410 -121168034 + MLT2B1 LTR ERVL 2 141 -379 1878 128 25 0 chr9 21103410 21103692 -121167752 - AluSq SINE Alu -24 289 1 1751 160 0 23 chr9 21103697 21103997 -121167447 - AluJo SINE Alu -15 297 5 1115 228 58 102 chr9 21103997 21104334 -121167110 + MLT2B1 LTR ERVL 145 459 -61 914 18 9 0 chr9 21104335 21104447 -121166997 + (TTTTC)n Simple_repeat Simple_repeat 5 117 0 242 114 0 23 chr9 21104448 21104492 -121166952 + (TTCC)n Simple_repeat Simple_repeat 4 46 0 1933 111 0 14 chr9 21104496 21104775 -121166669 - AluSq SINE Alu -38 275 1 335 131 49 16 chr9 21104775 21104836 -121166608 + MLT2B1 LTR ERVL 450 512 -8 2529 176 5 0 chr9 21105434 21105843 -121165601 - MLT1C LTR MaLR -56 411 1 1018 194 0 104 chr9 21105871 21106149 -121165295 - L1MC5 LINE L1 -1088 6873 6625 1956 142 0 3 chr9 21106241 21106550 -121164894 + AluSx SINE Alu 1 308 -4 385 248 91 16 chr9 21106938 21107059 -121164385 + MIR SINE MIR 90 219 -43 1892 131 3 0 chr9 21107080 21107386 -121164058 - AluSx SINE Alu 0 312 7 468 234 9 37 chr9 21107444 21107551 -121163893 - MER5B DNA MER1_type 0 178 75 2276 83 3 0 chr9 21107939 21108240 -121163204 - AluSp SINE Alu -11 302 1 2355 124 24 8 chr9 21108321 21108700 -121162744 + L1PB3 LINE L1 5704 6088 -66 372 197 0 0 chr9 21108678 21108744 -121162700 - L1PB3 LINE L1 -61 6093 6028 * 252 0 0 0 chr9 21108821 21108849 -121162595 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 687 271 33 20 chr9 21108869 21109113 -121162331 - L1ME LINE L1 -330 5791 5545 1391 285 88 25 chr9 21109285 21109323 -121162121 - L1ME3A LINE L1 -116 6054 6020 485 243 47 0 chr9 21109323 21109430 -121162014 - MER81 DNA DNA -2 112 1 1391 285 88 25 chr9 21109430 21110121 -121161323 - L1ME3A LINE L1 -150 6020 5279 607 241 74 6 chr9 21110344 21110506 -121160938 + MER5A DNA MER1_type 17 189 0 1095 164 6 0 chr9 21111144 21111321 -121160123 - AluJo/FRAM SINE Alu -3 309 132 1730 167 0 26 chr9 21111323 21111635 -121159809 - AluJo SINE Alu -8 304 1 1038 172 0 0 chr9 21113195 21113352 -121158092 - AluJb SINE Alu -19 293 137 476 261 8 8 chr9 21113358 21113475 -121157969 + MIR SINE MIR 82 198 -64 737 246 17 0 chr9 21113475 21113650 -121157794 + MER5B DNA MER1_type 1 178 0 23 0 0 0 chr9 21113690 21113713 -121157731 + AT_rich Low_complexity Low_complexity 1 23 0 266 232 71 0 chr9 21113787 21113843 -121157601 - L2 LINE L2 0 3272 3213 1636 143 189 38 chr9 21114148 21114518 -121156926 + MSTC LTR MaLR 3 428 0 1523 189 47 20 chr9 21115594 21116022 -121155422 - MLT1H LTR MaLR -3 546 1 914 282 65 3 chr9 21116235 21116529 -121154915 - L1MC4a LINE L1 -1883 5925 5614 2391 100 0 0 chr9 21116615 21116926 -121154518 - AluSq SINE Alu -2 311 1 719 193 59 0 chr9 21116933 21117052 -121154392 - FLAM_A SINE Alu -7 126 1 22 39 0 39 chr9 21117559 21117580 -121153864 + AT_rich Low_complexity Low_complexity 1 21 -28 1648 175 42 0 chr9 21117580 21117865 -121153579 + AluJb SINE Alu 3 299 -13 22 39 0 39 chr9 21117865 21117894 -121153550 + AT_rich Low_complexity Low_complexity 21 49 0 380 349 12 6 chr9 21118735 21118904 -121152540 - MER117 DNA MER1_type -24 173 4 324 0 0 0 chr9 21119109 21119145 -121152299 + (TG)n Simple_repeat Simple_repeat 1 36 0 447 226 21 0 chr9 21119318 21119411 -121152033 + MER5A DNA MER1_type 10 104 -85 1614 166 24 28 chr9 21119420 21119564 -121151880 + AluJo SINE Alu 1 144 -168 2585 116 11 26 chr9 21119564 21119945 -121151499 + THE1C LTR MaLR 1 375 0 1614 166 24 28 chr9 21119945 21120089 -121151355 + AluJo SINE Alu 144 288 -24 254 222 0 0 chr9 21120109 21120163 -121151281 + MER5A DNA MER1_type 136 189 0 229 299 0 26 chr9 21120213 21120290 -121151154 - L2 LINE L2 -25 3247 3173 1600 191 10 32 chr9 21121587 21121764 -121149680 - AluJo SINE Alu -5 307 138 1742 156 3 58 chr9 21121764 21122092 -121149352 - AluJb SINE Alu -2 310 1 1600 191 10 32 chr9 21122092 21122228 -121149216 - AluJo SINE Alu -174 138 1 342 138 231 0 chr9 21122232 21122297 -121149147 - MER3 DNA MER1_type -101 108 29 308 298 64 35 chr9 21122369 21122510 -121148934 + MIR3 SINE MIR 46 190 -18 790 211 32 0 chr9 21122856 21123012 -121148432 - MER5A DNA MER1_type 0 189 29 921 135 28 67 chr9 21124949 21125041 -121146403 - LTR32 LTR ERVL 0 471 388 2247 103 0 3 chr9 21125041 21125333 -121146111 - AluSx SINE Alu -21 291 1 921 135 28 67 chr9 21125333 21125418 -121146026 - LTR32 LTR ERVL -83 388 301 * 2103 156 24 0 chr9 21125412 21125745 -121145699 - LTR32 LTR ERVL -117 354 14 624 127 0 0 chr9 21126414 21126493 -121144951 - AluS SINE Alu -232 80 2 370 94 0 0 chr9 21126497 21126550 -121144894 + MADE1 DNA Mariner 28 80 0 306 331 46 0 chr9 21126556 21126686 -121144758 + L2 LINE L2 3137 3272 0 256 324 123 20 chr9 21128507 21128711 -121142733 - MIR SINE MIR -6 256 32 31907 101 23 58 chr9 21129559 21135921 -121135523 - L1PA7 LINE L1 -2 6152 22 403 259 98 0 chr9 21136073 21136216 -121135228 - MIR SINE MIR -3 259 103 25 75 0 0 chr9 21136804 21136857 -121134587 + AT_rich Low_complexity Low_complexity 1 53 0 2114 118 17 0 chr9 21136897 21137194 -121134250 - AluSx SINE Alu -10 302 1 304 221 23 70 chr9 21137409 21137495 -121133949 + Tigger5 DNA MER2_type 1 82 -2241 * 1461 139 34 0 chr9 21137481 21137719 -121133725 + Tigger5 DNA MER2_type 2077 2322 -1 1945 142 3 14 chr9 21138916 21139211 -121132233 + AluJo SINE Alu 1 292 -20 225 0 0 0 chr9 21140841 21140866 -121130578 + (A)n Simple_repeat Simple_repeat 1 25 0 366 258 34 0 chr9 21143526 21143615 -121127829 + L1MC4 LINE L1 6612 6703 -1339 27 49 0 0 chr9 21146081 21146122 -121125322 + AT_rich Low_complexity Low_complexity 1 41 0 190 234 21 0 chr9 21146483 21146530 -121124914 - L2 LINE L2 -2569 745 698 23 33 0 0 chr9 21147443 21147473 -121123971 + AT_rich Low_complexity Low_complexity 1 30 0 438 36 0 0 chr9 21148316 21148372 -121123072 + (CA)n Simple_repeat Simple_repeat 2 57 0 396 277 98 62 chr9 21148412 21148719 -121122725 + L1ME4a LINE L1 5591 5908 -213 2295 101 0 3 chr9 21148815 21149121 -121122323 - AluSc SINE Alu 0 309 5 229 314 38 31 chr9 21149268 21149427 -121122017 + L1ME LINE L1 5544 5703 -418 258 32 0 0 chr9 21149755 21149786 -121121658 + (TG)n Simple_repeat Simple_repeat 2 32 0 183 80 0 0 chr9 21149967 21149992 -121121452 + (TCCA)n Simple_repeat Simple_repeat 2 26 0 375 244 256 6 chr9 21150306 21150470 -121120974 + MIR SINE MIR 37 241 -21 414 290 48 60 chr9 21152004 21152226 -121119218 + MIR SINE MIR 2 222 -40 246 136 0 0 chr9 21152262 21152306 -121119138 + (T)n Simple_repeat Simple_repeat 1 44 0 1641 168 39 0 chr9 21152423 21152703 -121118741 - AluJo SINE Alu -21 291 1 262 309 79 40 chr9 21153047 21153173 -121118271 + L2 LINE L2 3183 3313 0 642 240 16 0 chr9 21153443 21153572 -121117872 + FLAM_A SINE Alu 1 131 -2 579 249 156 10 chr9 21153645 21153850 -121117594 + MIR SINE MIR 14 248 -14 2255 103 0 0 chr9 21153878 21154168 -121117276 - AluSx SINE Alu -22 290 1 198 0 0 0 chr9 21154543 21154565 -121116879 + (A)n Simple_repeat Simple_repeat 1 22 0 190 148 0 33 chr9 21154779 21154840 -121116604 + (CAAAAA)n Simple_repeat Simple_repeat 1 59 0 285 73 0 109 chr9 21155713 21155768 -121115676 - L1ME1 LINE L1 -12 6154 6106 1983 147 3 10 chr9 21155797 21156109 -121115335 - AluJb SINE Alu -2 310 1 390 175 29 87 chr9 21156123 21156226 -121115218 - L1M4 LINE L1 -642 5536 5440 4915 177 31 20 chr9 21156239 21157511 -121113933 - L1MB7 LINE L1 -10 6174 4893 515 259 95 13 chr9 21157631 21157789 -121113655 + MIR SINE MIR 3 173 -89 2202 113 3 10 chr9 21160157 21160458 -121110986 - AluSx SINE Alu -13 299 1 180 0 0 0 chr9 21160484 21160504 -121110940 + (T)n Simple_repeat Simple_repeat 1 20 0 216 227 0 0 chr9 21162034 21162078 -121109366 - L2 LINE L2 -8 3305 3262 645 250 112 18 chr9 21162127 21162351 -121109093 + MIR SINE MIR 16 260 -2 1091 213 139 32 chr9 21162359 21162484 -121108960 + MER2 DNA MER2_type 2 112 -232 1892 133 6 41 chr9 21162484 21162801 -121108643 - AluSp SINE Alu -7 306 1 1091 213 139 32 chr9 21162801 21162985 -121108459 + MER2 DNA MER2_type 112 344 0 290 317 77 0 chr9 21163035 21163139 -121108305 + MIR SINE MIR 22 133 -129 * 293 247 65 0 chr9 21163123 21163200 -121108244 + L2 LINE L2 3232 3313 0 1377 219 38 19 chr9 21163763 21164221 -121107223 + MLT1H LTR MaLR 1 549 0 324 304 94 7 chr9 21164446 21164584 -121106860 - MIR3 SINE MIR -9 199 50 236 233 17 33 chr9 21164616 21164676 -121106768 + MIR SINE MIR 36 94 -114 7560 87 21 3 chr9 21164768 21166555 -121104889 - L1PA7 LINE L1 -3 6466 4660 23 33 0 0 chr9 21166576 21166606 -121104838 + AT_rich Low_complexity Low_complexity 1 30 0 44005 32 21 1 chr9 21166606 21172636 -121098808 - L1PA2 LINE L1 0 6155 3 24365 117 42 31 chr9 21172638 21176034 -121095410 - L1PA7 LINE L1 -1785 4676 1139 2225 114 3 0 chr9 21176034 21176342 -121095102 - AluY SINE Alu -2 309 1 24365 117 42 31 chr9 21176342 21177494 -121093950 - L1PA7 LINE L1 -5322 1139 1 294 96 19 39 chr9 21177528 21177580 -121093864 + L2 LINE L2 3262 3312 -1 200 59 29 0 chr9 21178230 21178264 -121093180 + (GA)n Simple_repeat Simple_repeat 2 36 0 235 253 107 0 chr9 21178748 21178823 -121092621 + MIR SINE MIR 47 129 -133 2603 221 13 63 chr9 21179680 21180301 -121091143 + MLT1G LTR MaLR 1 590 0 345 117 0 0 chr9 21180379 21180439 -121091005 - L1MA4A LINE L1 -5 6298 6239 1792 135 53 3 chr9 21181252 21181555 -121089889 - L1MA4A LINE L1 0 6303 5986 187 278 189 0 chr9 21184020 21184110 -121087334 + MIR3 SINE MIR 4 110 -98 1492 129 27 99 chr9 21184364 21184698 -121086746 + MLT1B LTR MaLR 21 330 -60 1393 135 5 0 chr9 21184720 21184927 -121086517 - MER2 DNA MER2_type -135 210 3 799 268 158 17 chr9 21184928 21185283 -121086161 + MLT1J LTR MaLR 35 439 -72 316 231 26 0 chr9 21185573 21185651 -121085793 + MLT1J LTR MaLR 429 508 -3 2108 116 21 0 chr9 21186072 21186357 -121085087 + AluSq SINE Alu 5 295 -18 265 246 224 22 chr9 21187406 21187540 -121083904 - MIR3 SINE MIR -15 193 33 1765 204 165 9 chr9 21187694 21188131 -121083313 + LTR22 LTR ERVK 1 505 -4 1653 144 65 38 chr9 21188216 21188508 -121082936 - AluJb SINE Alu -12 300 1 283 260 27 0 chr9 21189456 21189529 -121081915 + MIR SINE MIR 170 244 -18 1029 206 37 124 chr9 21190679 21191103 -121080341 + MLT1B LTR MaLR 1 390 0 180 0 0 0 chr9 21191303 21191323 -121080121 + (TA)n Simple_repeat Simple_repeat 1 20 0 * 291 28 0 0 chr9 21191322 21191358 -121080086 + (GA)n Simple_repeat Simple_repeat 2 37 0 1978 123 0 14 chr9 21191358 21191635 -121079809 - AluSx SINE Alu -39 273 1 2198 89 17 7 chr9 21191842 21192135 -121079309 - AluSg SINE Alu -14 296 1 1575 199 3 7 chr9 21193238 21193529 -121077915 + AluJo SINE Alu 11 300 -12 495 118 0 0 chr9 21194201 21194277 -121077167 + (TCCC)n Simple_repeat Simple_repeat 4 79 0 1606 163 11 21 chr9 21194280 21194563 -121076881 - AluJb SINE Alu -32 280 1 204 167 0 0 chr9 21194922 21194970 -121076474 + (TCTA)n Simple_repeat Simple_repeat 3 50 0 11592 36 8 0 chr9 21195428 21197522 -121073922 + L1PA5 LINE L1 4050 6149 -5 2560 53 3 0 chr9 21197670 21197970 -121073474 + AluY SINE Alu 1 301 -10 23 54 0 0 chr9 21198078 21198115 -121073329 + AT_rich Low_complexity Low_complexity 1 37 0 869 250 102 0 chr9 21198886 21199102 -121072342 - MIR SINE MIR 0 262 25 452 232 72 14 chr9 21199332 21199470 -121071974 - L1MC4a LINE L1 -1850 5958 5813 1045 198 50 5 chr9 21199512 21199714 -121071730 - MER58C DNA MER1_type -1 214 4 180 308 77 11 chr9 21199788 21199879 -121071565 + L2 LINE L2 2688 2784 -530 511 315 152 32 chr9 21199907 21200564 -121070880 + L2 LINE L2 2538 3271 -1 262 330 91 35 chr9 21200605 21200802 -121070642 + L2 LINE L2 2840 3047 -225 488 271 0 45 chr9 21201064 21201197 -121070247 - MIR SINE MIR -43 219 93 183 313 73 73 chr9 21201915 21201936 -121069508 - MER5A DNA MER1_type -1 188 168 570 228 144 18 chr9 21201936 21202103 -121069341 + MER5A DNA MER1_type 2 189 0 183 313 73 73 chr9 21202103 21202231 -121069213 - MER5A DNA MER1_type -20 169 39 553 252 38 97 chr9 21202279 21202395 -121069049 + MIR SINE MIR 37 158 -104 2124 82 58 24 chr9 21202395 21202688 -121068756 + AluSx SINE Alu 3 305 -7 553 252 38 97 chr9 21202688 21202743 -121068701 + MIR SINE MIR 158 193 -69 1941 149 174 14 chr9 21202743 21203111 -121068333 + MSTA LTR MaLR 1 427 -1 553 252 38 97 chr9 21203111 21203176 -121068268 + MIR SINE MIR 193 260 -2 402 333 38 21 chr9 21203352 21203538 -121067906 - MER5A DNA MER1_type 0 189 1 405 0 0 0 chr9 21203891 21203936 -121067508 + (CA)n Simple_repeat Simple_repeat 2 46 0 231 36 0 0 chr9 21203935 21203963 -121067481 + (GA)n Simple_repeat Simple_repeat 2 29 0 * 284 328 25 8 chr9 21204398 21204517 -121066927 + MIR3 SINE MIR 51 171 -37 510 194 7 211 chr9 21204767 21205056 -121066388 + MIR SINE MIR 7 236 -26 342 289 54 13 chr9 21206307 21206456 -121064988 - L1ME4a LINE L1 -3 6118 5964 497 92 5 0 chr9 21207879 21207947 -121063497 + Tigger4(Zombi) DNA MER2_type 268 2731 0 2999 134 6 27 chr9 21208132 21208226 -121063218 + L1PB1 LINE L1 5686 5780 -371 217 68 45 0 chr9 21208226 21208270 -121063174 + (TA)n Simple_repeat Simple_repeat 1 46 0 2999 134 6 27 chr9 21208270 21208651 -121062793 + L1PB1 LINE L1 5780 6151 0 216 271 0 75 chr9 21209560 21209667 -121061777 + GA-rich Low_complexity Low_complexity 2 100 0 387 312 0 44 chr9 21211075 21211241 -121060203 + MIR3 SINE MIR 11 170 -38 267 383 19 0 chr9 21211836 21211990 -121059454 + MIR SINE MIR 96 252 -10 1159 244 101 40 chr9 21213185 21213935 -121057509 + L2 LINE L2 2449 3256 -57 294 129 0 0 chr9 21214679 21214741 -121056703 + (A)n Simple_repeat Simple_repeat 1 62 0 242 319 33 33 chr9 21214741 21214832 -121056612 - L2 LINE L2 -48 3224 3134 602 25 25 0 chr9 21215032 21215111 -121056333 - L1HS LINE L1 -2 6153 6073 27 49 0 0 chr9 21215111 21215152 -121056292 + AT_rich Low_complexity Low_complexity 1 41 0 1914 235 60 5 chr9 21215559 21216080 -121055364 - L1MC4a LINE L1 -721 7087 6604 199 189 0 38 chr9 21217567 21217620 -121053824 + L2 LINE L2 3261 3311 -2 255 61 0 0 chr9 21218567 21218600 -121052844 + (T)n Simple_repeat Simple_repeat 1 33 0 2148 120 0 0 chr9 21219084 21219376 -121052068 + AluSx SINE Alu 1 292 -20 1070 273 23 48 chr9 21219387 21219779 -121051665 + L1MC4a LINE L1 5517 5898 -1910 367 243 75 9 chr9 21220330 21220437 -121051007 - L3 LINE CR1 -126 1451 1338 685 274 162 76 chr9 21220725 21221353 -121050091 + L2 LINE L2 290 971 -2343 1153 233 114 18 chr9 21221353 21221740 -121049704 + L2 LINE L2 1982 2405 -909 1300 237 68 70 chr9 21221779 21222282 -121049162 + MLT1J LTR MaLR 7 508 -3 738 53 0 0 chr9 21222872 21222967 -121048477 + (CCTA)n Simple_repeat Simple_repeat 4 98 0 200 300 114 0 chr9 21223381 21223451 -121047993 + L2 LINE L2 3192 3269 -3 339 315 165 15 chr9 21223556 21223756 -121047688 + L2 LINE L2 3043 3272 0 302 328 16 16 chr9 21224153 21224275 -121047169 + MIR SINE MIR 20 141 -121 249 397 41 26 chr9 21224580 21224774 -121046670 + L2 LINE L2 3073 3269 -3 204 67 0 0 chr9 21224883 21224913 -121046531 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 413 214 101 75 chr9 21225507 21225666 -121045778 - MER103 DNA DNA -1 165 3 22 0 0 0 chr9 21226795 21226817 -121044627 + AT_rich Low_complexity Low_complexity 1 22 0 237 132 0 0 chr9 21229066 21229104 -121042340 + (TA)n Simple_repeat Simple_repeat 2 39 0 247 250 0 0 chr9 21231364 21231416 -121040028 + LTR30 LTR ERV1 1 52 -670 916 154 64 94 chr9 21231416 21231792 -121039652 + LTR12 LTR ERV1 53 285 -429 299 236 0 0 chr9 21231793 21231865 -121039579 + LTR30 LTR ERV1 553 624 -98 704 185 25 0 chr9 21231865 21231984 -121039460 + LTR12 LTR ERV1 359 480 -234 519 287 106 17 chr9 21232099 21232336 -121039108 + MIR SINE MIR 5 262 0 540 267 193 5 chr9 21232470 21232672 -121038772 + MIR SINE MIR 5 244 -18 1038 273 4 19 chr9 21233056 21233316 -121038128 + MIR SINE MIR 4 259 -3 941 237 17 17 chr9 21236129 21236365 -121035079 - MIR SINE MIR -20 242 7 231 36 0 0 chr9 21237049 21237077 -121034367 + (CA)n Simple_repeat Simple_repeat 2 29 0 2237 108 3 10 chr9 21237840 21238147 -121033297 + AluSx SINE Alu 1 305 -7 247 286 99 56 chr9 21238903 21239064 -121032380 + MIR SINE MIR 25 141 -67 180 0 0 0 chr9 21239165 21239185 -121032259 + (TC)n Simple_repeat Simple_repeat 1 20 0 315 130 0 0 chr9 21239185 21239239 -121032205 + (CA)n Simple_repeat Simple_repeat 2 55 0 2194 133 6 26 chr9 21240121 21240467 -121030977 - MER1B DNA MER1_type 0 339 1 203 354 0 0 chr9 21240853 21240949 -121030495 + GA-rich Low_complexity Low_complexity 3 98 0 440 259 144 73 chr9 21241263 21241727 -121029717 - L2 LINE L2 0 3313 2817 299 184 29 10 chr9 21241788 21241891 -121029553 + GA-rich Low_complexity Low_complexity 1 105 0 658 269 80 9 chr9 21242355 21242567 -121028877 + MIR SINE MIR 18 244 -18 209 167 83 0 chr9 21242535 21242571 -121028873 + L2 LINE L2 3217 3255 -17 * 899 215 17 130 chr9 21242653 21242748 -121028696 - MIR SINE MIR 0 262 158 785 185 0 22 chr9 21242748 21242883 -121028561 - FLAM_A SINE Alu 0 133 2 899 215 17 130 chr9 21242883 21243080 -121028364 - MIR SINE MIR -104 158 3 875 176 0 0 chr9 21243136 21243267 -121028177 + FLAM_A SINE Alu 1 131 -2 184 305 34 0 chr9 21243396 21243455 -121027989 + MIR SINE MIR 92 152 -110 211 380 38 0 chr9 21243638 21243717 -121027727 + L3b LINE CR1 1405 1486 -97 213 154 0 0 chr9 21244048 21244087 -121027357 + (TAA)n Simple_repeat Simple_repeat 1 39 0 548 246 72 82 chr9 21244191 21244435 -121027009 + MIR SINE MIR 3 256 -6 1845 250 51 26 chr9 21244937 21245445 -121025999 + MLT1H1 LTR MaLR 27 547 -8 396 0 0 0 chr9 21246400 21246444 -121025000 + (CA)n Simple_repeat Simple_repeat 1 44 0 1043 257 15 15 chr9 21246639 21246900 -121024544 - MIR SINE MIR 0 262 2 184 257 0 0 chr9 21247003 21247038 -121024406 + MIR SINE MIR 86 120 -142 414 323 88 80 chr9 21247044 21247419 -121024025 - L2 LINE L2 -32 3240 2863 1522 160 157 3 chr9 21247454 21247748 -121023696 - MER1B DNA MER1_type 0 339 1 220 231 15 0 chr9 21247831 21247896 -121023548 + (TA)n Simple_repeat Simple_repeat 1 66 0 287 257 43 0 chr9 21247947 21248017 -121023427 - Charlie7 DNA MER1_type -2508 104 32 640 287 42 38 chr9 21248156 21248421 -121023023 - L2 LINE L2 -525 2789 2524 274 288 104 24 chr9 21248528 21248653 -121022791 - MIR SINE MIR -106 156 22 494 329 18 22 chr9 21250312 21250540 -121020904 - MIR SINE MIR -21 241 15 450 291 63 24 chr9 21252922 21253235 -121018209 + L1ME4a LINE L1 5727 6057 -64 221 106 0 21 chr9 21255700 21255747 -121015697 + (TAAA)n Simple_repeat Simple_repeat 4 49 0 2391 107 0 0 chr9 21256083 21256392 -121015052 - AluSq SINE Alu -4 309 1 1514 188 0 38 chr9 21257947 21258239 -121013205 - AluJo SINE Alu -31 281 1 290 242 55 11 chr9 21258290 21258381 -121013063 - Charlie7 DNA MER1_type -2487 125 31 1452 121 74 5 chr9 21259128 21259343 -121012101 + MER30 DNA MER1_type 1 230 0 659 243 60 32 chr9 21259437 21259622 -121011822 - MIR SINE MIR -44 218 29 330 263 7 109 chr9 21260301 21260438 -121011006 - L2 LINE L2 0 3313 3191 22 56 0 0 chr9 21260820 21260856 -121010588 + AT_rich Low_complexity Low_complexity 1 36 0 25 0 0 0 chr9 21261156 21261181 -121010263 + AT_rich Low_complexity Low_complexity 1 25 0 348 333 122 6 chr9 21261420 21261600 -121009844 + L2 LINE L2 3072 3272 0 516 235 34 0 chr9 21262753 21262872 -121008572 - L2 LINE L2 0 3313 3191 3922 210 48 110 chr9 21263031 21263931 -121007513 - L1MD2 LINE L1 -3 6356 5461 774 161 0 0 chr9 21263931 21264055 -121007389 - FLAM_C SINE Alu 0 143 20 3922 210 48 110 chr9 21264055 21264489 -121006955 - L1MD2 LINE L1 -898 5461 5002 379 236 36 18 chr9 21264562 21264672 -121006772 - MIR SINE MIR -114 148 37 2458 85 3 0 chr9 21264687 21264993 -121006451 - AluSp SINE Alu -6 307 1 296 283 83 57 chr9 21266070 21266300 -121005144 - L1MC4 LINE L1 -24 8018 7783 900 123 0 18 chr9 21266662 21266825 -121004619 + (TTTC)n Simple_repeat Simple_repeat 1 160 0 2037 132 13 19 chr9 21266828 21267139 -121004305 - AluSx SINE Alu -3 309 1 245 277 0 15 chr9 21267251 21267316 -121004128 + Charlie4 DNA MER1_type 1892 1955 -6 228 286 38 86 chr9 21268094 21268199 -121003245 - MIR SINE MIR -57 151 52 357 280 102 19 chr9 21268421 21268578 -121002866 - MIR SINE MIR -57 205 36 25 31 0 0 chr9 21268959 21268991 -121002453 + AT_rich Low_complexity Low_complexity 1 32 0 360 304 41 46 chr9 21269053 21269247 -121002197 + MIR SINE MIR 56 248 -14 769 195 138 53 chr9 21269646 21269892 -121001552 + MLT1H LTR MaLR 1 267 -282 1104 228 89 57 chr9 21270911 21271315 -121000129 + MER96B DNA MER1_type 1 417 0 410 305 54 18 chr9 21271319 21271486 -120999958 - L2 LINE L2 -535 2779 2607 190 271 19 65 chr9 21271475 21271582 -120999862 + L2 LINE L2 1863 1964 -1350 * 339 256 144 56 chr9 21271632 21271812 -120999632 + L2 LINE L2 2156 2351 -963 1497 99 0 0 chr9 21271923 21272115 -120999329 - AluSg/x SINE Alu -15 295 104 377 239 103 45 chr9 21272189 21272344 -120999100 + L2 LINE L2 2373 2536 -778 2583 61 0 0 chr9 21273074 21273385 -120998059 - AluY SINE Alu 0 311 1 204 40 0 0 chr9 21273389 21273414 -120998030 + (T)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr9 21273588 21273609 -120997835 + AT_rich Low_complexity Low_complexity 1 21 0 645 272 67 42 chr9 21274764 21275003 -120996441 - MIR SINE MIR -10 252 8 25 51 0 0 chr9 21275195 21275234 -120996210 + AT_rich Low_complexity Low_complexity 1 39 0 203 278 0 0 chr9 21276238 21276292 -120995152 - MIR3 SINE MIR -49 159 106 303 320 87 6 chr9 21276305 21276477 -120994967 + MIR SINE MIR 21 206 -56 495 48 0 0 chr9 21277454 21277516 -120993928 + (CA)n Simple_repeat Simple_repeat 1 62 0 345 297 36 9 chr9 21278550 21278661 -120992783 - MIR SINE MIR -86 176 63 192 40 0 0 chr9 21279407 21279432 -120992012 + (A)n Simple_repeat Simple_repeat 1 25 0 385 304 119 26 chr9 21280357 21280584 -120990860 + MIR SINE MIR 15 262 0 315 49 0 0 chr9 21281228 21281269 -120990175 + (TG)n Simple_repeat Simple_repeat 1 41 0 715 316 39 13 chr9 21281640 21281874 -120989570 - MIR SINE MIR -10 252 13 263 284 15 0 chr9 21282079 21282146 -120989298 - MIR3 SINE MIR -26 182 115 2445 177 73 25 chr9 21282664 21283144 -120988300 + MLT1D LTR MaLR 3 505 0 307 164 0 18 chr9 21283246 21283301 -120988143 - L2 LINE L2 0 3272 3219 200 222 44 0 chr9 21283802 21283847 -120987597 + L2 LINE L2 3264 3310 -3 270 311 0 0 chr9 21284100 21284174 -120987270 + L2 LINE L2 3194 3267 -5 1068 208 77 80 chr9 21284335 21284672 -120986772 - L1ME1 LINE L1 -6 6160 5825 230 102 82 82 chr9 21284940 21284989 -120986455 + MER20B DNA MER1_type 685 733 -50 487 276 7 26 chr9 21286149 21286301 -120985143 + MER117 DNA MER1_type 12 160 -37 1338 81 29 0 chr9 21287787 21287961 -120983483 - L1PA8 LINE L1 -3 6169 5991 197 377 29 51 chr9 21287970 21288108 -120983336 + L2 LINE L2 2926 3060 -212 1084 190 22 35 chr9 21288125 21288351 -120983093 - AluJo SINE Alu -5 307 85 326 247 0 0 chr9 21288912 21288985 -120982459 - MIR SINE MIR -86 176 104 1199 265 106 47 chr9 21289004 21289385 -120982059 + LTR33 LTR ERVL 15 431 -90 1999 216 68 9 chr9 21289385 21289824 -120981620 + MLT1C LTR MaLR 3 467 0 1199 265 106 47 chr9 21289824 21289914 -120981530 + LTR33 LTR ERVL 431 514 -7 602 265 26 0 chr9 21291199 21291350 -120980094 - MIR SINE MIR -39 223 69 1253 176 83 23 chr9 21292488 21292789 -120978655 - MER33 DNA MER1_type -4 320 2 211 310 40 20 chr9 21293020 21293120 -120978324 + L2 LINE L2 2879 2980 -292 463 257 37 7 chr9 21293543 21293679 -120977765 - MIR SINE MIR -74 188 49 2230 154 33 35 chr9 21294943 21295403 -120976041 + MLT1C LTR MaLR 8 466 -1 257 331 72 24 chr9 21295606 21295857 -120975587 - L2 LINE L2 -656 2658 2396 221 308 11 55 chr9 21295970 21296025 -120975419 + MIR SINE MIR 68 119 -143 1289 153 32 130 chr9 21296025 21296364 -120975080 - AluJb SINE Alu -6 306 1 221 308 11 55 chr9 21296364 21296399 -120975045 + MIR SINE MIR 119 154 -108 1970 149 3 3 chr9 21296529 21296818 -120974626 + AluJb SINE Alu 1 289 -23 260 336 102 57 chr9 21297643 21298027 -120973417 + L2 LINE L2 2304 2704 -610 453 264 19 0 chr9 21298646 21298752 -120972692 - MIR SINE MIR -107 155 48 454 121 172 50 chr9 21298963 21299062 -120972382 - FRAM SINE Alu -18 158 48 181 329 36 73 chr9 21299212 21299349 -120972095 + L2 LINE L2 3182 3313 0 284 267 42 50 chr9 21299722 21299842 -120971602 + MER20 DNA MER1_type 86 204 -15 2146 176 65 48 chr9 21299842 21300337 -120971107 - MLT1D LTR MaLR -2 503 1 560 269 110 0 chr9 21300902 21301087 -120970357 - MIR SINE MIR -26 236 33 11912 150 45 9 chr9 21301484 21303829 -120967615 - L1PBa LINE L1 -1523 5339 3079 327 49 0 0 chr9 21303829 21303870 -120967574 + (TG)n Simple_repeat Simple_repeat 2 42 0 1962 145 0 3 chr9 21303870 21304153 -120967291 - AluSx SINE Alu -28 284 3 11912 150 45 9 chr9 21304153 21306814 -120964630 - L1PBa LINE L1 -3782 3080 1 227 253 121 0 chr9 21306826 21306909 -120964535 + MIR3 SINE MIR 2 94 -114 5304 108 1 4 chr9 21307278 21307998 -120963446 + L1PA13 LINE L1 5435 6152 -11 327 169 15 103 chr9 21308098 21308293 -120963151 + (CATATA)n Simple_repeat Simple_repeat 3 180 0 * 344 233 38 19 chr9 21308173 21308332 -120963112 + (TA)n Simple_repeat Simple_repeat 1 162 0 394 303 113 31 chr9 21308405 21308600 -120962844 + MIR SINE MIR 37 247 -15 328 252 72 9 chr9 21309699 21309810 -120961634 + MIR SINE MIR 109 226 -36 2044 170 30 0 chr9 21309835 21310244 -120961200 + MLT2B1 LTR ERVL 3 476 -39 477 62 0 0 chr9 21310244 21310309 -120961135 + (TG)n Simple_repeat Simple_repeat 2 66 0 2044 170 30 0 chr9 21310309 21310346 -120961098 + MLT2B1 LTR ERVL 476 510 -5 181 282 0 0 chr9 21310461 21310500 -120960944 - MIR SINE MIR -9 253 215 * 207 250 19 58 chr9 21310468 21310520 -120960924 - L2 LINE L2 -22 3291 3242 240 272 206 15 chr9 21310640 21310776 -120960668 - L2 LINE L2 -236 3036 2875 315 0 0 0 chr9 21311257 21311292 -120960152 + (TG)n Simple_repeat Simple_repeat 2 36 0 919 239 89 44 chr9 21311292 21311952 -120959492 + L2 LINE L2 2529 3265 -48 200 178 67 67 chr9 21313554 21313599 -120957845 - MIR SINE MIR -11 251 207 1222 224 12 0 chr9 21315197 21315452 -120955992 + L1PA15 LINE L1 4082 4339 -1807 6058 92 21 7 chr9 21315491 21316863 -120954581 + L1PA15 LINE L1 4316 5702 -463 2675 105 14 0 chr9 21316863 21317233 -120954211 + THE1C LTR MaLR 1 375 0 6058 92 21 7 chr9 21317233 21317702 -120953742 + L1PA15 LINE L1 5702 6163 -2 458 296 80 17 chr9 21318610 21318786 -120952658 + MIR SINE MIR 20 206 -56 347 288 210 10 chr9 21319434 21319639 -120951805 - MIR SINE MIR -3 259 14 1320 183 112 48 chr9 21320172 21320574 -120950870 + MLT2B1 LTR ERVL 7 475 -40 344 58 0 77 chr9 21320614 21320666 -120950778 + MLT2D LTR ERVL 367 414 0 * 778 301 59 70 chr9 21320666 21321119 -120950325 + MLT1K LTR MaLR 84 531 -57 294 50 0 0 chr9 21321324 21321364 -120950080 + (GA)n Simple_repeat Simple_repeat 1 40 0 817 196 80 20 chr9 21323049 21323248 -120948196 + L2 LINE L2 3103 3313 0 351 257 57 57 chr9 21323333 21323473 -120947971 + MIR SINE MIR 72 211 -51 186 43 0 0 chr9 21323486 21323509 -120947935 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 696 65 0 11 chr9 21323512 21323605 -120947839 - L1PA5 LINE L1 -8 6146 6055 886 38 0 0 chr9 21323605 21323710 -120947734 + L1P2 LINE L1 5653 5757 -397 25 0 0 0 chr9 21323820 21323845 -120947599 + AT_rich Low_complexity Low_complexity 1 25 0 30 0 0 0 chr9 21324187 21324217 -120947227 + AT_rich Low_complexity Low_complexity 1 30 0 220 231 19 0 chr9 21324218 21324270 -120947174 + CT-rich Low_complexity Low_complexity 3 55 0 330 329 104 24 chr9 21325135 21325299 -120946145 + HAL1 LINE L1 380 556 -1951 988 159 87 36 chr9 21325483 21325678 -120945766 + MER20 DNA MER1_type 15 219 0 293 184 57 162 chr9 21325681 21325909 -120945535 + HAL1 LINE L1 750 953 -1554 639 301 32 57 chr9 21325914 21326316 -120945128 + L1ME3A LINE L1 5552 5943 -227 2366 108 3 48 chr9 21326360 21326713 -120944731 + MER1B DNA MER1_type 1 337 0 253 136 0 0 chr9 21327056 21327100 -120944344 + HAL1 LINE L1 971 1014 -1493 22 0 0 0 chr9 21327188 21327210 -120944234 + AT_rich Low_complexity Low_complexity 1 22 0 26 30 0 0 chr9 21327235 21327268 -120944176 + AT_rich Low_complexity Low_complexity 1 33 0 1525 110 26 0 chr9 21327638 21327865 -120943579 + L1PA11 LINE L1 5942 6174 0 2068 130 25 25 chr9 21328522 21328883 -120942561 + MER46B DNA MER2_type 1 236 0 220 284 99 0 chr9 21329003 21329084 -120942360 - L2 LINE L2 0 3272 3184 296 308 48 10 chr9 21329287 21329391 -120942053 - MIR SINE MIR -60 148 41 219 330 73 9 chr9 21329398 21329507 -120941937 - L2 LINE L2 -9 3263 3148 231 200 0 0 chr9 21329753 21329798 -120941646 + L1ME4a LINE L1 5508 5552 -569 813 228 100 36 chr9 21329819 21330210 -120941234 + L1ME4a LINE L1 5704 6119 -2 241 295 105 65 chr9 21330309 21330509 -120940935 + MIR SINE MIR 15 222 -40 274 361 39 0 chr9 21330563 21330693 -120940751 + MIR SINE MIR 54 188 -74 480 267 17 17 chr9 21331772 21331888 -120939556 + LTR16C LTR ERVL 161 276 -215 613 200 0 15 chr9 21331888 21332018 -120939426 - MLT1D LTR MaLR 0 505 378 192 333 60 43 chr9 21332388 21332505 -120938939 + MIR SINE MIR 34 152 -110 687 181 39 126 chr9 21333066 21333268 -120938176 + MER113 DNA MER1_type? 4 171 -350 466 114 23 0 chr9 21333268 21333356 -120938088 + L1MA8 LINE L1 6198 6287 -4 687 181 39 126 chr9 21333356 21333462 -120937982 + MER113 DNA MER1_type? 171 285 -236 445 328 23 0 chr9 21333637 21333765 -120937679 - MIR SINE MIR -111 151 21 264 320 173 7 chr9 21334507 21334657 -120936787 + MER5A DNA MER1_type 12 186 -3 21 0 0 0 chr9 21335204 21335225 -120936219 + AT_rich Low_complexity Low_complexity 1 21 0 6179 17 0 17 chr9 21336061 21336785 -120934659 - L1P LINE L1 -3218 2928 2216 2597 30 3 0 chr9 21336785 21337083 -120934361 - AluY SINE Alu -12 299 1 6179 17 0 17 chr9 21337083 21337108 -120934336 - L1P LINE L1 -3930 2216 2192 20283 29 7 0 chr9 21337108 21340316 -120931128 + L1PA4 LINE L1 2936 6152 -3 350 340 78 64 chr9 21340600 21341268 -120930176 - L2 LINE L2 0 3272 2595 1014 260 0 4 chr9 21341486 21341713 -120929731 + Charlie1 DNA MER1_type 2 227 -2534 651 185 7 15 chr9 21341713 21341848 -120929596 + Charlie1 DNA MER1_type 2628 2761 0 414 244 41 8 chr9 21342594 21342717 -120928727 + MER3 DNA MER1_type 79 205 -4 880 276 180 36 chr9 21342980 21343160 -120928284 + L2 LINE L2 2804 2957 -356 1128 202 28 0 chr9 21343160 21343373 -120928071 - MER20 DNA MER1_type 0 219 1 880 276 180 36 chr9 21343373 21343637 -120927807 + L2 LINE L2 2957 3312 -1 22 0 0 0 chr9 21343851 21343873 -120927571 + AT_rich Low_complexity Low_complexity 1 22 0 285 29 0 0 chr9 21344833 21344867 -120926577 + (TAAAA)n Simple_repeat Simple_repeat 1 34 0 842 259 12 8 chr9 21345049 21345296 -120926148 - L1MA9 LINE L1 -40 6272 6025 328 260 150 0 chr9 21346758 21346858 -120924586 - L2 LINE L2 -5 3308 3194 2329 100 0 0 chr9 21348380 21348680 -120922764 - AluSg SINE Alu -10 300 1 1952 135 0 55 chr9 21348690 21349016 -120922428 - AluJb SINE Alu -4 308 1 322 89 0 0 chr9 21350499 21350544 -120920900 - MADE1 DNA Mariner 0 80 36 28 48 0 0 chr9 21350606 21350648 -120920796 + AT_rich Low_complexity Low_complexity 1 42 0 405 0 0 0 chr9 21351243 21351288 -120920156 + (TG)n Simple_repeat Simple_repeat 2 46 0 21 0 0 0 chr9 21353810 21353831 -120917613 + AT_rich Low_complexity Low_complexity 1 21 0 734 219 120 11 chr9 21355485 21355668 -120915776 + MER20 DNA MER1_type 17 219 0 719 257 18 27 chr9 21357803 21358025 -120913419 + L2 LINE L2 3094 3313 0 297 139 0 0 chr9 21358508 21358551 -120912893 - tRNA-Arg-CGC tRNA tRNA -32 44 2 5703 121 34 11 chr9 21359482 21360421 -120911023 + L1MA5A LINE L1 5332 6292 -5 183 184 0 0 chr9 21360520 21360558 -120910886 + L2 LINE L2 2995 3032 -281 262 238 68 0 chr9 21360654 21360736 -120910708 + L1ME4a LINE L1 5564 5637 -484 21 57 0 0 chr9 21360759 21360794 -120910650 + AT_rich Low_complexity Low_complexity 1 35 0 392 300 126 40 chr9 21360813 21361090 -120910354 + L1ME4a LINE L1 5669 5969 -152 328 311 215 19 chr9 21361574 21361720 -120909724 + MIR SINE MIR 4 120 -142 1213 165 103 96 chr9 21361720 21361922 -120909522 + MLT1B LTR MaLR 1 209 -181 273 57 0 0 chr9 21361922 21361957 -120909487 + (TG)n Simple_repeat Simple_repeat 1 35 0 1213 165 103 96 chr9 21361957 21362141 -120909303 + MLT1B LTR MaLR 209 390 0 328 311 215 19 chr9 21362141 21362203 -120909241 + MIR SINE MIR 120 253 -9 254 188 179 36 chr9 21362352 21362464 -120908980 + MIR SINE MIR 132 259 -3 21 0 0 0 chr9 21362860 21362881 -120908563 + AT_rich Low_complexity Low_complexity 1 21 0 529 159 28 0 chr9 21362881 21362988 -120908456 - L1MA7 LINE L1 -1 6290 6181 702 259 149 4 chr9 21364192 21364447 -120906997 - L2 LINE L2 -9 3304 3013 5475 31 7 0 chr9 21364505 21365204 -120906240 - L1PA4 LINE L1 -1207 4939 4236 7349 31 11 1 chr9 21365204 21366421 -120905023 + L1PA4 LINE L1 4930 6155 0 849 270 95 33 chr9 21366423 21366962 -120904482 + L1ME3A LINE L1 1918 2481 -3734 1704 178 0 43 chr9 21366962 21367265 -120904179 + AluJo SINE Alu 1 290 -22 849 270 95 33 chr9 21367265 21367488 -120903956 + L1ME3A LINE L1 2481 2689 -3526 1244 220 67 22 chr9 21367563 21367967 -120903477 - Zaphod DNA AcHobo -15 4016 3595 * 2225 230 74 48 chr9 21367965 21368885 -120902559 - Zaphod DNA AcHobo -3041 990 47 305 245 45 39 chr9 21368889 21369044 -120902400 + L1ME3A LINE L1 4197 4352 -1863 465 215 1 1 chr9 21369046 21369155 -120902289 - L1MC/D LINE L1 -366 5804 5695 * 1739 258 75 24 chr9 21369151 21369242 -120902202 + L1ME3A LINE L1 4387 4472 -1743 2044 116 0 20 chr9 21369242 21369534 -120901910 + AluSg SINE Alu 1 286 -24 1739 258 75 24 chr9 21369534 21370369 -120901075 + L1ME3A LINE L1 4472 5361 -854 2246 243 97 13 chr9 21370372 21371071 -120900373 + L1ME3A LINE L1 5424 6181 -58 369 207 69 28 chr9 21371134 21371279 -120900165 + L1MC5 LINE L1 7785 7935 -26 660 247 85 18 chr9 21371560 21371783 -120899661 + LTR50 LTR ERVL 1 238 -557 602 240 142 13 chr9 21371818 21372130 -120899314 + LTR50 LTR ERVL 201 795 0 182 365 42 0 chr9 21372979 21373075 -120898369 - MIR SINE MIR -142 120 21 567 293 83 4 chr9 21374858 21375111 -120896333 - MER102a DNA MER1_type -4 326 54 2091 145 92 8 chr9 21375365 21375758 -120895686 + MSTB LTR MaLR 1 426 0 692 253 27 11 chr9 21375815 21376001 -120895443 + MER5A DNA MER1_type 1 189 0 218 281 32 70 chr9 21376212 21376356 -120895088 - MIR SINE MIR -95 113 16 316 176 49 29 chr9 21376368 21376470 -120894974 - L1ME4a LINE L1 -1 6120 6017 27 29 0 0 chr9 21376643 21376677 -120894767 + AT_rich Low_complexity Low_complexity 1 34 0 23 33 0 0 chr9 21377532 21377562 -120893882 + AT_rich Low_complexity Low_complexity 1 30 0 585 211 111 64 chr9 21377803 21377974 -120893470 + MIR SINE MIR 80 258 -4 580 283 61 24 chr9 21378200 21378412 -120893032 - MIR SINE MIR -20 242 23 219 103 0 0 chr9 21379080 21379119 -120892325 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 321 285 209 19 chr9 21379232 21379390 -120892054 + L3b LINE CR1 1274 1461 -122 225 49 73 49 chr9 21379826 21379867 -120891577 - MER110A LTR ERV1 -4 464 423 774 177 50 6 chr9 21380001 21380182 -120891262 + MER53 DNA DNA 1 189 0 182 243 149 65 chr9 21380520 21380627 -120890817 - L2 LINE L2 -840 2474 2359 420 327 118 66 chr9 21380684 21381562 -120889882 + L2 LINE L2 2295 3221 -51 493 279 32 37 chr9 21381572 21381762 -120889682 - MIR SINE MIR 0 262 74 342 241 43 91 chr9 21381764 21381951 -120889493 + MER5B DNA MER1_type 1 178 0 373 288 24 29 chr9 21382900 21383070 -120888374 + MIR SINE MIR 23 191 -71 192 77 0 0 chr9 21383101 21383127 -120888317 + (GA)n Simple_repeat Simple_repeat 1 26 0 743 241 6 11 chr9 21383132 21383306 -120888138 - MIR SINE MIR -56 206 34 22 0 0 0 chr9 21385051 21385073 -120886371 + AT_rich Low_complexity Low_complexity 1 22 0 591 282 206 0 chr9 21385473 21385682 -120885762 + MIR SINE MIR 8 259 -3 568 178 7 44 chr9 21386882 21387017 -120884427 - MLT1E3 LTR MaLR 0 624 495 860 182 18 18 chr9 21387309 21387479 -120883965 - FRAM SINE Alu -6 170 1 2505 142 25 14 chr9 21388093 21388531 -120882913 + MSTB2 LTR MaLR 15 457 0 483 280 42 0 chr9 21390063 21390181 -120881263 - L2 LINE L2 -2 3311 3189 801 260 100 11 chr9 21390492 21390773 -120880671 + L2 LINE L2 1387 1692 -1622 3176 76 5 5 chr9 21390774 21391207 -120880237 - L1PA7 LINE L1 -1 6153 5721 1911 100 4 0 chr9 21391207 21391478 -120879966 + L1PA5 LINE L1 5881 6152 -2 29412 112 15 62 chr9 21391490 21391864 -120879580 - L1P3 LINE L1 -423 5731 5341 251 28 28 0 chr9 21391864 21391900 -120879544 + (TTTTA)n Simple_repeat Simple_repeat 4 40 0 5126 40 3 2 chr9 21391900 21392519 -120878925 - L1PA4 LINE L1 -13 6142 5523 29412 112 15 62 chr9 21392519 21398165 -120873279 - L1P3 LINE L1 -811 5343 10 2526 144 67 2 chr9 21398219 21398621 -120872823 - MSTC LTR MaLR 0 428 1 3879 161 76 5 chr9 21401127 21402037 -120869407 + L1MB7 LINE L1 5204 6184 0 488 262 14 7 chr9 21402920 21403061 -120868383 - MIR SINE MIR -48 214 73 327 237 132 9 chr9 21403624 21403738 -120867706 - MIR3 SINE MIR -4 204 77 701 317 5 20 chr9 21404387 21404586 -120866858 - MER91A DNA MER1_type 0 196 1 347 274 70 43 chr9 21404631 21404861 -120866583 - MER112 DNA MER1_type -24 236 1 283 329 60 13 chr9 21404960 21405109 -120866335 + MIR SINE MIR 23 178 -84 189 0 0 0 chr9 21405734 21405755 -120865689 + (CAAAAA)n Simple_repeat Simple_repeat 3 23 0 229 257 294 5 chr9 21406078 21406292 -120865152 + L1ME4a LINE L1 5591 5866 -255 306 274 42 71 chr9 21406411 21406579 -120864865 + L1ME4a LINE L1 5935 6097 -24 1101 246 111 73 chr9 21407110 21407918 -120863526 + L1MEd LINE L1 418 1256 -4949 560 334 73 14 chr9 21407920 21408264 -120863180 + L1MEd LINE L1 1329 1692 -4704 2198 73 3 22 chr9 21408474 21408788 -120862656 + AluY SINE Alu 4 311 0 2285 99 0 3 chr9 21408957 21409260 -120862184 - AluSg SINE Alu -8 302 1 299 264 84 30 chr9 21409449 21409485 -120861959 + L1MEd LINE L1 2059 2092 -4123 2170 58 47 0 chr9 21409485 21409761 -120861683 + AluY SINE Alu 14 302 -9 299 264 84 30 chr9 21409761 21410054 -120861390 + L1MEd LINE L1 2092 2360 -3855 261 368 0 0 chr9 21410177 21410264 -120861180 + GA-rich Low_complexity Low_complexity 2 88 0 484 296 30 18 chr9 21411572 21411741 -120859703 - MIR SINE MIR -7 255 85 721 211 46 0 chr9 21415978 21416130 -120855314 + MIR SINE MIR 79 237 -25 21 0 0 0 chr9 21416589 21416610 -120854834 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr9 21417778 21417807 -120853637 + GC_rich Low_complexity Low_complexity 1 29 0 582 182 8 16 chr9 21418965 21419086 -120852358 - FLAM_A SINE Alu -5 137 18 729 154 62 20 chr9 21419103 21419298 -120852146 - L1MC5 LINE L1 -30 7931 7729 745 176 16 132 chr9 21419299 21419618 -120851826 + L1MC5 LINE L1 6815 7096 -865 225 203 0 0 chr9 21419723 21419782 -120851662 - L1M4 LINE L1 -1072 5074 5016 541 277 97 76 chr9 21419923 21420346 -120851098 - MLT1J LTR MaLR -58 453 22 2029 99 13 56 chr9 21421284 21421586 -120849858 + AluSq SINE Alu 5 293 -20 274 283 168 9 chr9 21421866 21421979 -120849465 + L2 LINE L2 3141 3271 -1 1126 281 76 13 chr9 21422015 21422396 -120849048 - MLT1I LTR MaLR -4 405 1 421 174 248 0 chr9 21422492 21422601 -120848843 - MIR SINE MIR -106 156 21 1584 115 91 35 chr9 21423190 21423477 -120847967 + L1PA15 LINE L1 5863 6165 0 21 0 0 0 chr9 21423742 21423763 -120847681 + AT_rich Low_complexity Low_complexity 1 21 0 187 179 0 89 chr9 21424342 21424398 -120847046 - L3 LINE CR1 -206 1371 1321 352 265 52 80 chr9 21424439 21424698 -120846746 - HAL1 LINE L1 -140 2367 2117 3807 20 9 2 chr9 21424698 21425148 -120846296 + L1PA4 LINE L1 5703 6155 0 352 265 52 80 chr9 21425148 21425212 -120846232 - HAL1 LINE L1 -390 2117 2053 2177 259 74 72 chr9 21425301 21426789 -120844655 - HAL1 LINE L1 -698 1809 319 505 185 50 17 chr9 21426801 21426920 -120844524 - MLT1E2 LTR MaLR -2 624 502 369 250 109 0 chr9 21427320 21427448 -120843996 - HAL1b LINE L1 -690 658 517 261 0 0 0 chr9 21427466 21427495 -120843949 + (CA)n Simple_repeat Simple_repeat 1 29 0 456 294 153 64 chr9 21427495 21427934 -120843510 - HAL1b LINE L1 -867 481 4 1076 219 100 9 chr9 21428696 21429016 -120842428 - MLT1C LTR MaLR -2 465 117 239 291 110 0 chr9 21429533 21429660 -120841784 - L1ME LINE L1 -302 5819 5679 6337 65 0 0 chr9 21429904 21430684 -120840760 - LTR17 LTR ERV1 0 780 1 2036 184 11 8 chr9 21431664 21432028 -120839416 + MLT1A1 LTR MaLR 1 365 0 24 0 0 0 chr9 21432382 21432406 -120839038 + AT_rich Low_complexity Low_complexity 1 24 0 283 167 39 0 chr9 21432733 21432811 -120838633 - L1MB7 LINE L1 -4 6180 6100 2642 216 47 54 chr9 21432922 21433816 -120837628 - L1M4 LINE L1 -1425 4721 3834 566 355 59 17 chr9 21434065 21434355 -120837089 - L3 LINE CR1 -826 751 450 374 276 95 0 chr9 21434386 21434491 -120836953 + L2 LINE L2 3199 3313 0 192 273 0 18 chr9 21434532 21434587 -120836857 - L3 LINE CR1 -1194 383 330 419 243 95 14 chr9 21434649 21434797 -120836647 - MER69A DNA AcHobo -7 170 11 25 0 0 0 chr9 21434973 21434998 -120836446 + AT_rich Low_complexity Low_complexity 1 25 0 198 269 129 86 chr9 21435076 21435169 -120836275 + MIR3 SINE MIR 6 102 -106 2103 171 79 46 chr9 21435174 21435731 -120835713 - LTR24B LTR ERV1 -17 593 1 210 340 53 11 chr9 21435732 21435826 -120835618 + MIR3 SINE MIR 96 193 -15 3645 109 71 12 chr9 21438291 21438869 -120832575 + LTR9 LTR ERV1 1 612 0 28 61 0 0 chr9 21439734 21439783 -120831661 + AT_rich Low_complexity Low_complexity 1 49 0 1356 177 105 15 chr9 21439895 21440229 -120831215 + MLT1A1 LTR MaLR 2 365 0 396 240 101 16 chr9 21440285 21440414 -120831030 - L1ME LINE L1 -4129 2132 1993 352 204 37 75 chr9 21440414 21440494 -120830950 - AluS SINE Alu -243 60 1 701 306 24 0 chr9 21440723 21441014 -120830430 - L1ME LINE L1 -4604 1657 1360 350 276 71 47 chr9 21441077 21441429 -120830015 - L1ME LINE L1 -4905 1165 802 2015 149 17 3 chr9 21442185 21442486 -120828958 - AluSx SINE Alu -7 305 1 2063 153 14 14 chr9 21442514 21442879 -120828565 + MLT1A1 LTR MaLR 1 365 0 344 296 74 40 chr9 21443005 21443181 -120828263 - MLT1J LTR MaLR -327 184 3 198 0 0 0 chr9 21444826 21444848 -120826596 + (T)n Simple_repeat Simple_repeat 1 22 0 571 311 123 4 chr9 21445063 21445298 -120826146 - MLT1J2 LTR MaLR -118 332 70 2822 130 12 0 chr9 21445379 21445802 -120825642 - MSTA LTR MaLR 0 428 1 193 259 56 0 chr9 21445828 21445882 -120825562 + L2 LINE L2 3257 3313 0 37 86 0 0 chr9 21446327 21446420 -120825024 + AT_rich Low_complexity Low_complexity 1 93 0 1582 158 13 76 chr9 21446592 21446908 -120824536 - AluJo SINE Alu -10 302 7 5509 161 13 12 chr9 21447274 21448860 -120822584 + L1PB1 LINE L1 4195 5794 -357 663 78 0 0 chr9 21448860 21448950 -120822494 + (TA)n Simple_repeat Simple_repeat 1 90 0 5509 161 13 12 chr9 21448950 21449308 -120822136 + L1PB1 LINE L1 5794 6150 -1 26 0 0 0 chr9 21449308 21449334 -120822110 + AT_rich Low_complexity Low_complexity 1 26 0 387 100 0 0 chr9 21449334 21449394 -120822050 + L1PB1 LINE L1 6090 6149 -2 194 0 39 0 chr9 21449402 21449428 -120822016 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 273 169 0 0 chr9 21449547 21449606 -120821838 + (TG)n Simple_repeat Simple_repeat 2 60 0 307 286 36 24 chr9 21451798 21451966 -120819478 + LTR16B LTR ERVL 289 458 -6 750 185 159 26 chr9 21452069 21452164 -120819280 - L1MC4 LINE L1 0 8042 7961 279 0 0 0 chr9 21452164 21452195 -120819249 + (TG)n Simple_repeat Simple_repeat 2 32 0 750 185 159 26 chr9 21452195 21452326 -120819118 - L1MC4 LINE L1 -81 7961 7786 1123 117 0 43 chr9 21452333 21452527 -120818917 + AluSc SINE Alu 126 312 0 7090 62 7 0 chr9 21452564 21454052 -120817392 + L1PA8 LINE L1 4667 6159 -13 311 187 112 37 chr9 21454053 21454160 -120817284 - L1MC4 LINE L1 -265 7777 7663 187 163 0 102 chr9 21454188 21454237 -120817207 - L2 LINE L2 -8 3305 3262 22 0 0 0 chr9 21454672 21454694 -120816750 + AT_rich Low_complexity Low_complexity 1 22 0 1298 210 10 86 chr9 21455299 21455694 -120815750 - MLT1A1 LTR MaLR 0 365 1 27 29 0 0 chr9 21456354 21456388 -120815056 + AT_rich Low_complexity Low_complexity 1 34 0 251 196 0 0 chr9 21456397 21456453 -120814991 + HsTC2 DNA Tc2 1 56 -1842 1165 165 11 36 chr9 21457027 21457322 -120814122 + L1MA4 LINE L1 6030 6305 0 276 306 12 0 chr9 21458221 21458306 -120813138 + MIR SINE MIR 165 250 -12 279 0 0 0 chr9 21458532 21458563 -120812881 + (CA)n Simple_repeat Simple_repeat 2 32 0 510 280 13 25 chr9 21459082 21459239 -120812205 - MIR SINE MIR -30 232 78 1495 172 7 123 chr9 21459531 21459944 -120811500 - MLT1A1 LTR MaLR 0 365 1 4099 34 4 0 chr9 21461195 21461844 -120809600 + L1P2 LINE L1 4874 5526 -629 * 31444 43 1 9 chr9 21461818 21465892 -120805552 + L1P LINE L1 7 4055 -2091 2931 13 0 0 chr9 21465892 21466210 -120805234 + AluYb8 SINE Alu 1 318 0 31444 43 1 9 chr9 21466210 21467176 -120804268 + L1P LINE L1 4055 5027 -1119 288 0 0 0 chr9 21467176 21467208 -120804236 + (CA)n Simple_repeat Simple_repeat 1 32 0 1205 128 0 6 chr9 21467209 21467381 -120804063 + AluSg/x SINE Alu 133 303 -9 442 194 0 9 chr9 21467382 21467490 -120803954 - L1M4 LINE L1 -1676 4470 4364 2905 39 0 0 chr9 21467501 21468061 -120803383 + L1P2 LINE L1 5031 5590 -565 1412 203 87 6 chr9 21468462 21468783 -120802661 + MER7A DNA MER2_type 2 346 0 1528 201 117 17 chr9 21469350 21469753 -120801691 - L1ME2 LINE L1 -9 6155 5713 1141 279 120 3 chr9 21469816 21470182 -120801262 - L2 LINE L2 -3 3310 2902 708 199 44 16 chr9 21470262 21470437 -120801007 + LTR41 LTR ERVL 3 181 -614 3692 289 26 3 chr9 21470437 21471454 -120799990 + ERVL LTR ERVL 3972 5012 -752 1978 120 0 37 chr9 21471940 21472240 -120799204 + AluSq SINE Alu 1 289 -24 5770 117 11 7 chr9 21472246 21474225 -120797219 - L1PA16 LINE L1 -9 6860 4867 3716 230 25 9 chr9 21474227 21475418 -120796026 - L1PA16 LINE L1 -2908 3941 2733 1754 164 17 7 chr9 21475466 21475753 -120795691 + AluJb SINE Alu 1 290 -22 301 336 107 15 chr9 21477057 21477188 -120794256 + MIR SINE MIR 49 191 -71 189 220 153 59 chr9 21477639 21477757 -120793687 - L2 LINE L2 -17 3296 3168 21 36 0 0 chr9 21478087 21478115 -120793329 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr9 21478867 21478891 -120792553 + AT_rich Low_complexity Low_complexity 1 24 0 1891 216 70 17 chr9 21479172 21479654 -120791790 - L1MB8 LINE L1 0 6178 5671 717 73 0 0 chr9 21479654 21479750 -120791694 + (TA)n Simple_repeat Simple_repeat 2 97 0 2029 135 14 3 chr9 21479750 21480046 -120791398 - AluSq SINE Alu -14 299 1 25194 156 16 14 chr9 21480067 21485666 -120785778 - L1PA10 LINE L1 -15 6468 818 1568 235 64 43 chr9 21485750 21486189 -120785255 - MLT1D LTR MaLR -57 448 1 1357 205 35 55 chr9 21486189 21486624 -120784820 - L1PA15 LINE L1 -1599 5045 4620 5524 135 8 4 chr9 21486624 21488237 -120783207 + L1PA15 LINE L1 5039 6660 -3 20698 148 25 14 chr9 21488240 21495347 -120776097 + L1MA2 LINE L1 15 7339 -384 1732 44 5 0 chr9 21495347 21495552 -120775892 - AluY SINE Alu -1 310 105 20698 148 25 14 chr9 21495552 21495942 -120775502 + L1MA2 LINE L1 7339 7723 0 3234 238 64 51 chr9 21495982 21496349 -120775095 - L1MEc LINE L1 -2576 4068 3707 2256 97 0 3 chr9 21496349 21496659 -120774785 + AluSc SINE Alu 1 309 0 3234 238 64 51 chr9 21496659 21497706 -120773738 - L1MEc LINE L1 -2937 3707 2633 1782 177 3 0 chr9 21497706 21498000 -120773444 - AluJo SINE Alu -15 297 3 3234 238 64 51 chr9 21498000 21498027 -120773417 - L1MEc LINE L1 -4011 2633 2608 313 251 21 7 chr9 21498046 21498179 -120773265 - L1MDa LINE L1 -4711 1829 1688 751 293 78 25 chr9 21498251 21498736 -120772708 - L1MEc LINE L1 -4271 2554 2044 4745 158 46 6 chr9 21498743 21499842 -120771602 - L1MB7 LINE L1 -21 6163 5016 672 255 81 23 chr9 21499837 21500096 -120771348 - L1MEc LINE L1 -4737 1909 1636 * 466 231 0 40 chr9 21500141 21500314 -120771130 - L1MEc LINE L1 -5083 1459 1294 264 147 40 27 chr9 21501933 21502008 -120769436 + CT-rich Low_complexity Low_complexity 4 79 0 729 100 16 68 chr9 21502009 21502199 -120769245 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 207 200 27 27 chr9 21502199 21502274 -120769170 + CT-rich Low_complexity Low_complexity 4 78 0 1626 116 0 0 chr9 21502712 21502937 -120768507 - AluSg/x SINE Alu 0 310 86 189 0 0 0 chr9 21503641 21503662 -120767782 + (A)n Simple_repeat Simple_repeat 1 21 0 364 339 43 25 chr9 21504028 21504423 -120767021 - Charlie4 DNA MER1_type -1126 835 434 360 64 0 0 chr9 21505010 21505057 -120766387 + (TG)n Simple_repeat Simple_repeat 1 47 0 2171 116 151 5 chr9 21507202 21507574 -120763870 + MSTA LTR MaLR 3 428 0 822 284 168 11 chr9 21509239 21509591 -120761853 - L2 LINE L2 -683 2631 2225 777 253 76 4 chr9 21509598 21509823 -120761621 + MIR SINE MIR 4 244 -18 836 314 95 6 chr9 21509850 21510188 -120761256 - L2 LINE L2 -1093 2221 1854 727 293 105 23 chr9 21510597 21511034 -120760410 - L1ME4a LINE L1 -232 5889 5417 270 179 15 172 chr9 21512203 21512281 -120759163 + MIR3 SINE MIR 82 132 -76 2082 71 0 0 chr9 21512281 21512536 -120758908 - AluY SINE Alu -18 293 39 270 179 15 172 chr9 21512536 21512591 -120758853 + MIR3 SINE MIR 132 194 -14 302 183 146 0 chr9 21512672 21512754 -120758690 + L2 LINE L2 2128 2221 -1093 2311 137 8 3 chr9 21513316 21513680 -120757764 + MER47A DNA MER2_type 1 366 0 238 346 168 15 chr9 21513751 21513953 -120757491 - MLT1K LTR MaLR -172 416 184 294 182 91 45 chr9 21514171 21514259 -120757185 - MIR SINE MIR -75 187 96 4098 202 16 56 chr9 21514305 21515161 -120756283 - L1PA13 LINE L1 -5 6158 5337 6155 75 12 0 chr9 21515161 21515961 -120755483 + L1PA10 LINE L1 5344 6153 -15 1032 155 21 0 chr9 21515961 21516148 -120755296 - L1PA14 LINE L1 -791 5355 5165 * 2426 122 66 4 chr9 21516147 21516885 -120754559 + L1PA14 LINE L1 5335 6146 -5 909 248 126 39 chr9 21517582 21518018 -120753426 - MLT2F LTR ERVL -189 474 1 180 0 0 0 chr9 21518125 21518145 -120753299 + (TTA)n Simple_repeat Simple_repeat 3 22 0 957 337 140 14 chr9 21518323 21518952 -120752492 + L2 LINE L2 476 1183 -2131 485 254 26 62 chr9 21518952 21519145 -120752299 - MLT1F LTR MaLR -356 186 1 632 280 156 21 chr9 21519145 21519427 -120752017 + L2 LINE L2 1888 2207 -1107 733 120 10 0 chr9 21519456 21519556 -120751888 - FLAM_A SINE Alu -32 110 10 1081 305 110 19 chr9 21519557 21520095 -120751349 + L2 LINE L2 2199 2785 -529 994 159 137 13 chr9 21520124 21520351 -120751093 - MSTB LTR MaLR -4 428 174 1024 160 0 0 chr9 21520358 21520508 -120750936 + FRAM SINE Alu 5 154 -22 1008 151 11 27 chr9 21520525 21520711 -120750733 - MSTB LTR MaLR -241 185 3 764 351 20 44 chr9 21520768 21521263 -120750181 + L2 LINE L2 2824 3306 -7 370 202 39 48 chr9 21521497 21521601 -120749843 - MIR SINE MIR -123 139 37 379 245 31 75 chr9 21522296 21522455 -120748989 - MIR SINE MIR -27 235 84 340 161 69 35 chr9 21522461 21522548 -120748896 - MLT1J LTR MaLR -1 510 421 1015 270 60 3 chr9 21522592 21522911 -120748533 - MLT1J LTR MaLR -166 345 9 227 310 0 0 chr9 21523277 21523335 -120748109 + L2 LINE L2 3215 3272 0 252 86 0 0 chr9 21524281 21524316 -120747128 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 682 265 0 41 chr9 21525276 21525472 -120745972 - MIR SINE MIR -65 197 10 403 300 38 25 chr9 21525477 21525637 -120745807 + MIR SINE MIR 63 224 -38 24 0 0 0 chr9 21526243 21526267 -120745177 + AT_rich Low_complexity Low_complexity 1 24 0 21 57 0 0 chr9 21526358 21526393 -120745051 + AT_rich Low_complexity Low_complexity 1 35 0 431 257 88 58 chr9 21526420 21526634 -120744810 - MIR SINE MIR -44 218 5 656 305 43 30 chr9 21526705 21527033 -120744411 - MLT2E LTR ERVL 0 628 297 2561 72 0 0 chr9 21527215 21527522 -120743922 + AluY SINE Alu 1 307 -4 692 363 67 3 chr9 21527599 21527988 -120743456 - LTR67 LTR ERVL -35 522 109 2453 91 40 43 chr9 21528373 21528748 -120742696 - THE1C LTR MaLR -1 374 1 328 302 0 19 chr9 21529034 21529140 -120742304 - LTR67 LTR ERVL -452 105 2 483 347 32 18 chr9 21529229 21529448 -120741996 + MIR SINE MIR 29 250 -12 249 345 117 81 chr9 21529852 21530094 -120741350 - L2 LINE L2 -11 3261 3004 4605 133 22 82 chr9 21530094 21531076 -120740368 - MER49 LTR ERV1 0 923 1 249 345 117 81 chr9 21531076 21531140 -120740304 - L2 LINE L2 -268 3004 2944 1273 204 39 74 chr9 21531905 21532268 -120739176 - MLT1A2 LTR MaLR -24 350 1 502 178 50 0 chr9 21532868 21532969 -120738475 + MER5A DNA MER1_type 7 112 -77 2064 90 66 17 chr9 21534161 21534449 -120736995 - AluSp SINE Alu -11 302 1 896 254 87 52 chr9 21534483 21534633 -120736811 - MER34 LTR ERV1 -5 537 394 23479 29 10 0 chr9 21534633 21538245 -120733199 + L1PA4 LINE L1 2540 6155 0 896 254 87 52 chr9 21538245 21538610 -120732834 - MER34 LTR ERV1 -148 394 4 427 311 8 16 chr9 21538734 21538856 -120732588 - L2 LINE L2 -4 3309 3189 347 311 192 42 chr9 21538925 21539378 -120732066 + L2 LINE L2 2379 2899 -415 207 69 0 0 chr9 21539642 21539671 -120731773 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 4934 31 0 0 chr9 21539674 21540251 -120731193 - L1PA3 LINE L1 -3 6152 5576 23 33 0 0 chr9 21540755 21540785 -120730659 + AT_rich Low_complexity Low_complexity 1 30 0 298 194 28 28 chr9 21540958 21541030 -120730414 - MIR3 SINE MIR -17 191 120 643 316 62 21 chr9 21541353 21541689 -120729755 - L3 LINE CR1 -853 724 375 186 327 193 0 chr9 21541727 21541950 -120729494 + L2 LINE L2 1978 2243 -1071 243 394 10 0 chr9 21542450 21542549 -120728895 - L2 LINE L2 -25 3247 3148 318 336 71 77 chr9 21542660 21543193 -120728251 + L2 LINE L2 2324 2853 -461 215 337 90 0 chr9 21543256 21543345 -120728099 + L2 LINE L2 2940 3036 -236 241 310 103 7 chr9 21543467 21543612 -120727832 - MIR SINE MIR -66 196 38 27 49 0 0 chr9 21543666 21543707 -120727737 + AT_rich Low_complexity Low_complexity 1 41 0 3952 180 55 19 chr9 21543733 21545118 -120726326 - L1MB7 LINE L1 -51 6133 4695 745 278 68 24 chr9 21545255 21545669 -120725775 - L1ME4a LINE L1 -116 6005 5574 198 0 0 0 chr9 21545736 21545758 -120725686 + (T)n Simple_repeat Simple_repeat 1 22 0 327 251 86 17 chr9 21546115 21546290 -120725154 - L1MB7 LINE L1 -1459 4687 4501 781 335 52 57 chr9 21546477 21546895 -120724549 - L1MB7 LINE L1 -1867 4279 3865 279 0 0 0 chr9 21546895 21546926 -120724518 + (TG)n Simple_repeat Simple_repeat 2 32 0 781 335 52 57 chr9 21546926 21547205 -120724239 - L1MB7 LINE L1 -2281 3865 3586 2356 116 27 16 chr9 21548343 21548714 -120722730 - THE1C LTR MaLR 0 375 1 832 205 164 8 chr9 21549162 21549425 -120722019 - LTR16C LTR ERVL 0 491 188 850 231 77 5 chr9 21549604 21549812 -120721632 + MIR SINE MIR 13 235 -27 2299 64 24 13 chr9 21550000 21550298 -120721146 + AluY SINE Alu 1 301 -10 595 253 5 74 chr9 21551510 21551712 -120719732 - MIR SINE MIR -5 257 70 339 254 29 80 chr9 21551803 21551941 -120719503 - MIR SINE MIR -59 149 19 387 0 0 0 chr9 21552376 21552419 -120719025 + (CA)n Simple_repeat Simple_repeat 1 43 0 198 103 0 0 chr9 21554950 21554979 -120716465 + (ATG)n Simple_repeat Simple_repeat 1 29 0 628 237 48 79 chr9 21555001 21555229 -120716215 - MIR SINE MIR -24 238 18 207 254 0 0 chr9 21555390 21555445 -120715999 + GA-rich Low_complexity Low_complexity 2 56 0 277 241 11 46 chr9 21555609 21555696 -120715748 - MIR SINE MIR -30 232 149 850 232 110 4 chr9 21555706 21555960 -120715484 + MER5C DNA MER1_type 1 281 -43 202 213 59 132 chr9 21555990 21556126 -120715318 - MIR SINE MIR -80 128 3 814 159 0 8 chr9 21556249 21556381 -120715063 + FLAM_A SINE Alu 1 131 -2 416 283 125 11 chr9 21556672 21556856 -120714588 + MIR SINE MIR 1 205 -57 617 231 62 82 chr9 21558077 21558333 -120713111 - MLT1L LTR MaLR -220 395 145 340 285 235 24 chr9 21558625 21558814 -120712630 + MIR SINE MIR 19 244 -18 401 192 14 0 chr9 21558995 21559068 -120712376 - MER2 DNA MER2_type -5 340 267 183 42 0 0 chr9 21559093 21559117 -120712327 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1096 164 63 34 chr9 21559167 21559374 -120712070 - AluJo SINE Alu -97 215 3 997 208 5 14 chr9 21559385 21559437 -120712007 - MER2 DNA MER2_type -135 210 159 1918 152 124 26 chr9 21559437 21559825 -120711619 + MSTA LTR MaLR 1 426 -2 997 208 5 14 chr9 21559825 21559984 -120711460 - MER2 DNA MER2_type -186 159 1 321 26 0 0 chr9 21560306 21560344 -120711100 + (TG)n Simple_repeat Simple_repeat 1 38 0 268 288 32 0 chr9 21560354 21560479 -120710965 + L1MC4 LINE L1 7914 8042 0 503 261 170 0 chr9 21562387 21562540 -120708904 - MER5A DNA MER1_type -1 188 10 431 278 146 0 chr9 21562961 21563105 -120708339 + MIR SINE MIR 10 174 -88 246 276 40 0 chr9 21563286 21563362 -120708082 - L2 LINE L2 -225 3047 2969 454 200 48 9 chr9 21563410 21563515 -120707929 - MER5A DNA MER1_type -77 112 4 191 312 71 57 chr9 21563515 21563646 -120707798 - L2 LINE L2 -299 2973 2841 375 211 77 29 chr9 21564440 21564544 -120706900 - L2 LINE L2 0 3313 3205 252 305 62 80 chr9 21565293 21565764 -120705680 - L2 LINE L2 -213 3059 2619 3201 192 38 66 chr9 21565768 21566554 -120704890 + L1 LINE L1 3531 4282 -1864 2270 101 0 3 chr9 21566554 21566851 -120704593 + AluSc SINE Alu 1 296 -13 3201 192 38 66 chr9 21566851 21567106 -120704338 + L1 LINE L1 4282 4543 -1603 519 165 0 0 chr9 21567106 21567184 -120704260 + Tigger5 DNA MER2_type 1 78 -2245 471 183 97 0 chr9 21567184 21567277 -120704167 - Tigger5 DNA MER2_type -3 2320 2219 * 479 219 0 0 chr9 21567253 21567335 -120704109 + Tigger5 DNA MER2_type 2242 2323 0 1850 206 40 30 chr9 21567335 21567616 -120703828 + L1ME LINE L1 4542 4830 -1316 2012 159 0 0 chr9 21567616 21567912 -120703532 + AluSx SINE Alu 1 296 -16 1850 206 40 30 chr9 21567912 21568058 -120703386 + L1ME LINE L1 4830 4973 -1173 461 126 95 11 chr9 21568074 21568169 -120703275 + L1MC2 LINE L1 6242 6344 0 314 51 0 0 chr9 21568177 21568216 -120703228 + AluSc SINE Alu 93 131 -168 946 202 21 55 chr9 21568220 21568458 -120702986 + L1ME LINE L1 5437 5666 -500 414 165 83 151 chr9 21568603 21568821 -120702623 + ORSL DNA AcHobo 69 271 -4 440 229 32 10 chr9 21569197 21569380 -120702064 - MLT1G1 LTR MaLR -411 179 3 1921 122 39 0 chr9 21569421 21569700 -120701744 - AluSq SINE Alu -1 312 23 183 129 0 0 chr9 21572258 21572289 -120699155 + (A)n Simple_repeat Simple_repeat 1 31 0 312 239 314 6 chr9 21572987 21573146 -120698298 + MIR SINE MIR 33 240 -22 189 0 0 0 chr9 21573546 21573567 -120697877 + (CAAAC)n Simple_repeat Simple_repeat 4 24 0 400 289 8 16 chr9 21574079 21574200 -120697244 + MIR SINE MIR 16 135 -127 310 333 26 0 chr9 21574324 21574438 -120697006 - MIR SINE MIR -40 222 106 207 293 43 115 chr9 21574449 21574657 -120696787 + L2 LINE L2 2688 2880 -434 6781 134 94 4 chr9 21575084 21576214 -120695230 + Tigger3b DNA MER2_type 1 1231 0 350 328 23 15 chr9 21576435 21576566 -120694878 - MIR3 SINE MIR -52 156 25 303 267 9 9 chr9 21577452 21577557 -120693887 - HAL1 LINE L1 -158 2349 2245 1708 158 4 0 chr9 21577746 21578011 -120693433 + AluJb SINE Alu 20 285 -27 263 232 16 200 chr9 21578969 21579159 -120692285 - MER5A DNA MER1_type 0 189 35 271 0 51 0 chr9 21579234 21579273 -120692171 + (TAAAA)n Simple_repeat Simple_repeat 5 45 0 3141 163 24 16 chr9 21580161 21580738 -120690706 - L1MB7 LINE L1 -19 6165 5584 326 23 0 23 chr9 21580790 21580834 -120690610 + (TGAA)n Simple_repeat Simple_repeat 4 46 0 241 341 188 5 chr9 21581076 21581284 -120690160 + MER115 DNA AcHobo 72 317 -376 355 235 0 0 chr9 21581290 21581358 -120690086 + MER115 DNA AcHobo 467 534 -159 273 299 0 0 chr9 21581463 21581530 -120689914 + MER115 DNA AcHobo 626 692 -1 295 282 88 30 chr9 21581607 21581757 -120689687 + MIR3 SINE MIR 2 157 -105 207 140 53 18 chr9 21582341 21582398 -120689046 + A-rich Low_complexity Low_complexity 2 60 0 534 241 18 0 chr9 21582542 21582654 -120688790 + MER81 DNA DNA 1 114 0 762 305 27 19 chr9 21582826 21583085 -120688359 - MIR SINE MIR 0 262 2 32 26 0 0 chr9 21583646 21583685 -120687759 + AT_rich Low_complexity Low_complexity 1 39 0 2095 80 30 0 chr9 21583805 21584105 -120687339 + L1MA3 LINE L1 5997 6305 0 374 313 92 24 chr9 21584270 21584473 -120686971 + MIR SINE MIR 48 262 0 565 256 19 0 chr9 21584732 21584888 -120686556 + MER117 DNA MER1_type 2 160 -37 271 284 0 11 chr9 21584969 21585064 -120686380 + (TA)n Simple_repeat Simple_repeat 1 94 0 2270 128 0 0 chr9 21585366 21585678 -120685766 - AluSx SINE Alu 0 312 1 1560 257 24 19 chr9 21586331 21586747 -120684697 + L1MA7 LINE L1 499 916 -5863 891 147 7 0 chr9 21586752 21586888 -120684556 + AluSg/x SINE Alu 168 304 -8 362 292 12 67 chr9 21586895 21587108 -120684336 + L1MA7 LINE L1 912 1142 -4706 2021 265 34 55 chr9 21587421 21588096 -120683348 + L1MA7 LINE L1 1330 1990 -4789 * 6941 42 0 0 chr9 21588092 21588906 -120682538 - L1PA5 LINE L1 0 6154 5341 1209 225 28 11 chr9 21588905 21589293 -120682151 + L1MA7 LINE L1 1948 2350 -4499 * 7416 183 26 33 chr9 21589291 21589629 -120681815 + L1MA7 LINE L1 4460 4799 -2194 2360 119 76 15 chr9 21589629 21589972 -120681472 - THE1B LTR MaLR 0 364 1 7416 183 26 33 chr9 21589972 21591409 -120680035 + L1MA7 LINE L1 4799 6245 -748 1787 170 3 23 chr9 21591409 21591709 -120679735 + AluJb SINE Alu 1 294 -18 7416 183 26 33 chr9 21591709 21591978 -120679466 + L1MA7 LINE L1 6245 6514 -479 207 0 0 0 chr9 21591978 21592001 -120679443 + (TA)n Simple_repeat Simple_repeat 2 24 0 7416 183 26 33 chr9 21592001 21592508 -120678936 + L1MA7 LINE L1 6514 6987 -6 1141 256 183 13 chr9 21592659 21593124 -120678320 - MLT2F LTR ERVL -119 544 1 189 74 0 0 chr9 21594209 21594236 -120677208 + (CA)n Simple_repeat Simple_repeat 2 28 0 2177 128 0 7 chr9 21594499 21594805 -120676639 - AluSx SINE Alu -8 304 1 1715 226 88 68 chr9 21594946 21595436 -120676008 - MLT2B3 LTR ERVL 0 554 50 2341 82 0 3 chr9 21595436 21595729 -120675715 - AluY SINE Alu -19 292 1 1715 226 88 68 chr9 21595729 21595781 -120675663 - MLT2B3 LTR ERVL -504 50 1 211 172 0 47 chr9 21595974 21596038 -120675406 + CT-rich Low_complexity Low_complexity 4 64 0 303 269 173 10 chr9 21596151 21596255 -120675189 - MIR SINE MIR -18 244 124 1398 201 11 4 chr9 21596276 21596544 -120674900 + AluJb SINE Alu 11 280 -32 1237 44 8 12 chr9 21596544 21596791 -120674653 + (GAAA)n Simple_repeat Simple_repeat 1 246 0 1679 229 41 15 chr9 21596892 21597351 -120674093 + L1ME1 LINE L1 5693 6163 -3 4629 172 28 27 chr9 21597371 21598552 -120672892 + L1MB5 LINE L1 4980 6167 -7 28 61 0 0 chr9 21600685 21600734 -120670710 + AT_rich Low_complexity Low_complexity 1 49 0 358 236 170 55 chr9 21600848 21601013 -120670431 + MIR SINE MIR 65 248 -14 193 400 45 0 chr9 21601498 21601653 -120669791 - L2 LINE L2 -357 2957 2796 540 317 11 6 chr9 21601662 21601842 -120669602 - MIR SINE MIR 0 262 82 482 184 0 23 chr9 21601849 21601931 -120669513 + Tigger7 DNA MER2_type 2 82 -619 2237 107 0 3 chr9 21601931 21602241 -120669203 + AluSc SINE Alu 1 309 0 390 91 0 0 chr9 21602396 21602451 -120668993 + (CATA)n Simple_repeat Simple_repeat 1 55 0 2136 137 72 23 chr9 21602452 21602933 -120668511 - MLT2A2 LTR ERVL -46 508 1 374 239 0 0 chr9 21602935 21603006 -120668438 + Tigger7 DNA MER2_type 2517 2587 0 184 279 0 0 chr9 21603008 21603051 -120668393 - MIR SINE MIR -219 43 1 481 293 127 19 chr9 21603073 21603380 -120668064 - L2 LINE L2 -536 2778 2439 303 197 28 0 chr9 21603504 21603575 -120667869 + MER103 DNA DNA 46 118 -48 400 274 121 0 chr9 21604423 21604547 -120666897 - MIR SINE MIR -44 218 80 199 177 0 129 chr9 21604928 21604990 -120666454 - L2 LINE L2 -3 3269 3216 389 250 0 11 chr9 21605386 21605499 -120665945 - MIR SINE MIR -78 130 20 23 0 0 0 chr9 21606619 21606642 -120664802 + AT_rich Low_complexity Low_complexity 1 23 0 554 339 87 4 chr9 21606954 21607184 -120664260 - MIR SINE MIR -1 261 13 2239 97 3 16 chr9 21607839 21608147 -120663297 + AluSq SINE Alu 2 305 -8 320 347 18 30 chr9 21608249 21608416 -120663028 - L2 LINE L2 -556 2758 2594 27 0 0 0 chr9 21609410 21609437 -120662007 + AT_rich Low_complexity Low_complexity 1 27 0 404 303 22 7 chr9 21609448 21609635 -120661809 - MIR SINE MIR -16 246 20 337 280 90 0 chr9 21610451 21610551 -120660893 + MIR SINE MIR 118 226 -36 181 266 89 89 chr9 21611381 21611539 -120659905 + MIR SINE MIR 16 173 -89 373 190 323 38 chr9 21611605 21611763 -120659681 - MIR SINE MIR -28 234 32 454 261 112 15 chr9 21613890 21614024 -120657420 - MIR SINE MIR -102 160 14 684 265 93 0 chr9 21614276 21614438 -120657006 + MER45A DNA AcHobo 2 178 0 296 315 95 16 chr9 21614806 21615003 -120656441 + L1ME4a LINE L1 5594 5825 -296 1236 193 52 0 chr9 21615003 21615215 -120656229 - MER58A DNA MER1_type 0 224 2 296 315 95 16 chr9 21615215 21615322 -120656122 + L1ME4a LINE L1 5825 5922 -199 2338 29 43 0 chr9 21616841 21617118 -120654326 - AluY SINE Alu -22 289 1 2402 93 0 3 chr9 21617842 21618185 -120653259 - AluY SINE Alu 0 342 1 852 79 14 14 chr9 21618206 21618346 -120653098 + (TTCC)n Simple_repeat Simple_repeat 1 140 0 351 231 238 7 chr9 21619963 21620110 -120651334 + MIR SINE MIR 58 238 -24 228 283 0 0 chr9 21620354 21620400 -120651044 + C-rich Low_complexity Low_complexity 4 49 0 614 120 0 51 chr9 21621239 21621356 -120650088 - L1PA16 LINE L1 0 6166 6056 1079 130 22 0 chr9 21621518 21621703 -120649741 - L1PA16 LINE L1 -105 6061 5873 267 288 63 36 chr9 21621760 21621871 -120649573 + L2 LINE L2 3199 3312 -1 26 0 0 0 chr9 21622476 21622502 -120648942 + AT_rich Low_complexity Low_complexity 1 26 0 551 254 0 0 chr9 21623255 21623369 -120648075 + MIR SINE MIR 47 160 -102 240 35 0 0 chr9 21624074 21624103 -120647341 + (TC)n Simple_repeat Simple_repeat 1 29 0 * 315 0 0 0 chr9 21624102 21624137 -120647307 + (CA)n Simple_repeat Simple_repeat 1 35 0 320 364 52 7 chr9 21625137 21625291 -120646153 - MIR3 SINE MIR -3 205 45 233 352 50 19 chr9 21625540 21625699 -120645745 + MIR SINE MIR 57 220 -42 3481 137 7 7 chr9 21625893 21626478 -120644966 + MER7C DNA MER2_type 2 586 -16 215 79 26 0 chr9 21626757 21626795 -120644649 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 246 296 28 9 chr9 21627442 21627550 -120643894 + L1ME LINE L1 5744 5853 -268 4586 31 1 0 chr9 21628920 21629824 -120641620 - L1P1 LINE L1 -434 5721 4817 * 6802 26 7 0 chr9 21629823 21630670 -120640774 + L1P1 LINE L1 3967 4819 -1327 199 308 0 0 chr9 21630700 21630752 -120640692 + L2 LINE L2 3219 3270 -2 1521 209 173 30 chr9 21630819 21631293 -120640151 - MLT1F1 LTR MaLR 0 567 1 539 28 0 0 chr9 21631625 21631696 -120639748 - L1PA4 LINE L1 0 6155 6085 408 96 78 0 chr9 21631700 21631815 -120639629 + CT-rich Low_complexity Low_complexity 1 124 0 267 54 0 0 chr9 21631810 21631847 -120639597 + (CA)n Simple_repeat Simple_repeat 1 37 0 * 888 201 29 34 chr9 21631963 21632167 -120639277 - MIR SINE MIR -4 258 56 375 260 58 0 chr9 21632249 21632353 -120639091 - MIR SINE MIR -71 191 82 321 219 48 19 chr9 21632429 21632534 -120638910 - MER112 DNA MER1_type -5 255 148 396 213 37 19 chr9 21632550 21632658 -120638786 - MER112 DNA MER1_type -83 177 68 207 69 0 0 chr9 21632662 21632691 -120638753 + (TG)n Simple_repeat Simple_repeat 2 30 0 366 309 83 28 chr9 21632932 21633113 -120638331 + MIR SINE MIR 72 262 0 284 315 0 0 chr9 21633262 21633335 -120638109 - L2 LINE L2 -1 3271 3199 401 290 68 31 chr9 21634161 21634323 -120637121 - MIR SINE MIR -73 189 22 1849 158 33 22 chr9 21635797 21636052 -120635392 - MLT1A1 LTR MaLR 0 365 103 2399 103 36 20 chr9 21636052 21636410 -120635034 + THE1B LTR MaLR 1 364 0 1849 158 33 22 chr9 21636410 21636515 -120634929 - MLT1A1 LTR MaLR -262 103 1 530 266 0 28 chr9 21637625 21637802 -120633642 - MER104 DNA Tc2 -3 177 6 1827 224 103 8 chr9 21638816 21639348 -120632096 + MER119 DNA MER1_type 1 583 0 4411 221 104 50 chr9 21639614 21641588 -120629856 + L1M4 LINE L1 3148 5227 -919 333 0 0 0 chr9 21641603 21641640 -120629804 + (CA)n Simple_repeat Simple_repeat 2 38 0 539 248 16 16 chr9 21642151 21642280 -120629164 + L2 LINE L2 3185 3313 0 915 219 15 5 chr9 21642610 21642806 -120628638 - MIR SINE MIR -56 206 9 321 189 189 0 chr9 21642873 21642947 -120628497 - MER5A DNA MER1_type -88 101 14 805 246 113 57 chr9 21642975 21643382 -120628062 - MLT1J LTR MaLR -81 430 1 1995 101 0 0 chr9 21643573 21643830 -120627614 + AluSq SINE Alu 1 257 -56 3980 36 0 0 chr9 21643930 21644422 -120627022 + L1PA3 LINE L1 5668 6159 0 787 238 55 8 chr9 21644620 21644948 -120626496 + MLT2F LTR ERVL 1 390 -273 496 176 48 64 chr9 21644992 21645117 -120626327 + MLT2F LTR ERVL 479 601 -62 197 321 49 12 chr9 21645750 21645831 -120625613 + MIR SINE MIR 27 110 -98 622 206 59 0 chr9 21648060 21648196 -120623248 + MIR SINE MIR 83 226 -36 256 254 0 0 chr9 21648342 21648405 -120623039 + (TATG)n Simple_repeat Simple_repeat 4 66 0 6897 65 1 1 chr9 21648561 21649730 -120621714 + L1PA7 LINE L1 4981 6151 -3 272 224 35 24 chr9 21650021 21650106 -120621338 + (CATATA)n Simple_repeat Simple_repeat 1 86 0 22 35 0 0 chr9 21650159 21650188 -120621256 + AT_rich Low_complexity Low_complexity 1 29 0 252 200 0 0 chr9 21650348 21650408 -120621036 + (TA)n Simple_repeat Simple_repeat 1 60 0 598 330 34 13 chr9 21651275 21651511 -120619933 - MIR SINE MIR 0 262 22 779 198 82 33 chr9 21653989 21654232 -120617212 + MER112 DNA MER1_type 1 255 -1 226 273 263 0 chr9 21654233 21654332 -120617112 + L2 LINE L2 3189 3313 0 349 349 78 0 chr9 21654979 21655145 -120616299 + MIR SINE MIR 3 181 -81 230 256 16 116 chr9 21655146 21655267 -120616177 - MER102b DNA MER1_type 0 341 233 322 263 0 0 chr9 21655340 21655420 -120616024 + MIR SINE MIR 183 262 0 2105 140 20 12 chr9 21655554 21655953 -120615491 + L1 LINE L1 4873 5274 -872 1712 194 28 30 chr9 21706124 21706485 -120564959 - MLT1A1 LTR MaLR -3 362 3 339 293 55 37 chr9 21706487 21706596 -120564848 - MIR SINE MIR -64 198 87 426 353 53 5 chr9 21706596 21706803 -120564641 + MIR SINE MIR 4 220 -42 237 272 302 13 chr9 21708068 21708224 -120563220 + MIR SINE MIR 17 214 -48 192 286 0 0 chr9 21708297 21708346 -120563098 - L2 LINE L2 -98 3215 3167 493 252 44 15 chr9 21708358 21708493 -120562951 - MIR SINE MIR -73 189 51 2949 212 30 25 chr9 21708651 21709284 -120562160 - L1M1 LINE L1 -6913 652 17 286 289 71 15 chr9 21709301 21709498 -120561946 - L1MC/D LINE L1 -2331 5477 5270 183 147 0 0 chr9 21710672 21710706 -120560738 + MIR SINE MIR 107 140 -122 4105 183 51 19 chr9 21711744 21713041 -120558403 + L1MB5 LINE L1 4809 6157 -17 333 0 0 0 chr9 21713044 21713081 -120558363 + (CA)n Simple_repeat Simple_repeat 2 38 0 829 280 119 47 chr9 21713273 21713965 -120557479 - L2 LINE L2 -5 3308 2554 28 0 0 0 chr9 21716023 21716051 -120555393 + AT_rich Low_complexity Low_complexity 1 28 0 424 239 98 31 chr9 21716062 21716329 -120555115 + MLT2C1 LTR ERVL 1 342 -55 236 192 0 19 chr9 21716367 21716419 -120555025 + MLT2F LTR ERVL 613 663 0 195 280 59 110 chr9 21718005 21718123 -120553321 - L3 LINE CR1 -1360 217 106 270 325 114 8 chr9 21718150 21718273 -120553171 - L2 LINE L2 -4 3268 3133 263 206 0 73 chr9 21718380 21718516 -120552928 + T-rich Low_complexity Low_complexity 4 129 0 384 286 94 49 chr9 21718531 21718734 -120552710 + MIR SINE MIR 37 248 -14 23 0 0 0 chr9 21718840 21718863 -120552581 + AT_rich Low_complexity Low_complexity 1 23 0 488 344 82 29 chr9 21719062 21719341 -120552103 - L2 LINE L2 0 3272 2979 213 175 123 18 chr9 21720488 21720545 -120550899 + MIR3 SINE MIR 13 75 -133 858 264 43 9 chr9 21722333 21722564 -120548880 + MIR SINE MIR 12 250 -12 285 197 98 0 chr9 21722688 21722749 -120548695 - L2 LINE L2 0 3272 3206 222 238 25 75 chr9 21724126 21724206 -120547238 + MIR SINE MIR 26 101 -161 1722 174 4 0 chr9 21724874 21725149 -120546295 + AluSx SINE Alu 1 276 -36 27 0 0 0 chr9 21725154 21725181 -120546263 + AT_rich Low_complexity Low_complexity 1 27 0 386 243 18 18 chr9 21725182 21725293 -120546151 - MER103 DNA DNA 0 166 56 26 30 0 0 chr9 21725515 21725548 -120545896 + AT_rich Low_complexity Low_complexity 1 33 0 2190 125 3 0 chr9 21725657 21725968 -120545476 - AluSx SINE Alu 0 312 1 212 356 0 14 chr9 21726113 21726186 -120545258 - MIR SINE MIR -166 96 25 27 0 0 0 chr9 21729081 21729108 -120542336 + AT_rich Low_complexity Low_complexity 1 27 0 22 35 0 0 chr9 21729203 21729232 -120542212 + AT_rich Low_complexity Low_complexity 1 29 0 185 231 0 15 chr9 21729389 21729454 -120541990 + (TA)n Simple_repeat Simple_repeat 2 65 0 26 50 0 0 chr9 21729481 21729521 -120541923 + AT_rich Low_complexity Low_complexity 1 40 0 277 313 37 29 chr9 21729530 21729773 -120541671 - L1MC/D LINE L1 -1935 5873 5629 328 298 0 57 chr9 21731447 21731571 -120539873 + MIR SINE MIR 96 212 -50 1426 228 33 12 chr9 21733077 21733411 -120538033 - MER58B DNA MER1_type 0 341 1 544 258 86 11 chr9 21733521 21733707 -120537737 + MLT1I LTR MaLR 2 201 -208 414 257 35 0 chr9 21733742 21733855 -120537589 + MLT1I LTR MaLR 288 404 -5 567 287 57 24 chr9 21734082 21734413 -120537031 + L1ME4a LINE L1 5515 5856 -265 296 155 0 0 chr9 21734530 21734588 -120536856 + L1ME4a LINE L1 6061 6118 -3 459 275 99 28 chr9 21734955 21735327 -120536117 - MLT1J2 LTR MaLR -14 436 4 252 286 71 0 chr9 21736655 21736795 -120534649 - L1ME4a LINE L1 -15 6106 5957 362 338 41 14 chr9 21737011 21737156 -120534288 + MIR SINE MIR 20 168 -94 290 272 103 0 chr9 21737359 21737495 -120533949 + L1ME4a LINE L1 5957 6106 -15 358 221 172 37 chr9 21738348 21738511 -120532933 - MLT1L LTR MaLR -93 522 338 246 62 0 0 chr9 21738741 21738773 -120532671 + (A)n Simple_repeat Simple_repeat 1 32 0 330 350 96 41 chr9 21739530 21739844 -120531600 + L3b LINE CR1 1217 1547 -36 465 362 33 76 chr9 21740534 21740585 -120530859 + L2 LINE L2 2943 2995 -277 1332 188 51 34 chr9 21740585 21740756 -120530688 - AluJb SINE Alu -15 297 117 271 42 62 0 chr9 21740756 21740804 -120530640 + T-rich Low_complexity Low_complexity 2 52 0 1332 188 51 34 chr9 21740804 21740924 -120530520 - AluJb SINE Alu -195 117 1 465 362 33 76 chr9 21740924 21741201 -120530243 + L2 LINE L2 2995 3257 -15 2724 88 0 8 chr9 21742825 21743210 -120528234 + L1PA7 LINE L1 5764 6145 -9 27958 50 1 2 chr9 21743278 21746925 -120524519 + L1PA3 LINE L1 9 3652 -2494 13900 33 1 0 chr9 21747068 21749528 -120521916 + L1PA3 LINE L1 3687 6152 -3 1679 182 35 18 chr9 21749569 21749909 -120521535 + MER7A DNA MER2_type 2 345 -1 2884 191 37 6 chr9 21749951 21750496 -120520948 + MER68 LTR ERV1 1 562 0 238 247 82 0 chr9 21750735 21750808 -120520636 - MIR3 SINE MIR -21 187 109 23 0 0 0 chr9 21751359 21751382 -120520062 + AT_rich Low_complexity Low_complexity 1 23 0 600 138 33 53 chr9 21751504 21751656 -120519788 + MER104 DNA Tc2 1 149 -31 1261 262 77 24 chr9 21751725 21752218 -120519226 + LTR33 LTR ERVL 3 521 0 553 250 171 0 chr9 21752244 21752384 -120519060 + MER5A DNA MER1_type 26 189 0 696 268 111 4 chr9 21753892 21754127 -120517317 + MIR SINE MIR 2 261 -1 1929 284 30 11 chr9 21754475 21755141 -120516303 + L1MEc LINE L1 36 714 -5682 180 77 0 0 chr9 21755296 21755322 -120516122 + (TTCA)n Simple_repeat Simple_repeat 4 29 0 3083 172 106 22 chr9 21755496 21756222 -120515222 - LTR48 LTR ERV1 0 787 1 478 316 57 11 chr9 21757791 21757968 -120513476 + MLT1J LTR MaLR 84 268 -243 427 304 130 0 chr9 21758259 21758397 -120513047 - MIR SINE MIR -87 175 20 675 272 31 51 chr9 21758419 21758673 -120512771 - MIR SINE MIR 0 262 14 22 0 0 0 chr9 21759211 21759233 -120512211 + AT_rich Low_complexity Low_complexity 1 22 0 305 215 13 0 chr9 21759373 21759452 -120511992 + L1M4 LINE L1 3649 3728 -2418 1894 239 37 50 chr9 21759476 21760021 -120511423 + MLT1E LTR MaLR 36 573 -20 1049 327 69 45 chr9 21760047 21760552 -120510892 + L1M4 LINE L1 3733 4249 -1897 918 231 82 23 chr9 21760552 21760808 -120510636 - MLT1D LTR MaLR 0 505 235 1476 236 111 39 chr9 21760820 21760960 -120510484 - L1M4 LINE L1 -916 5230 5102 2796 125 29 9 chr9 21760960 21761407 -120510037 + L1PA15 LINE L1 5710 6165 0 1476 236 111 39 chr9 21761407 21762065 -120509379 - L1M4 LINE L1 -1044 5102 4374 322 286 0 12 chr9 21762349 21762433 -120509011 + MER5B DNA MER1_type 1 83 -95 784 257 11 0 chr9 21762771 21762946 -120508498 - MER45A DNA AcHobo 0 178 2 2244 113 6 3 chr9 21763092 21763403 -120508041 + AluSx SINE Alu 1 312 0 24 0 0 0 chr9 21763654 21763678 -120507766 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr9 21765933 21765954 -120505490 + AT_rich Low_complexity Low_complexity 1 21 0 1345 215 27 52 chr9 21765965 21766333 -120505111 + MLT1A1 LTR MaLR 7 365 0 364 277 41 69 chr9 21766500 21766919 -120504525 + HAL1b LINE L1 211 617 -731 730 172 44 59 chr9 21766920 21767124 -120504320 - MER106A DNA MER1_type 0 236 36 7576 159 15 23 chr9 21767435 21769105 -120502339 - L1PA12 LINE L1 -4227 3357 1694 198 128 0 0 chr9 21769244 21769283 -120502161 + (CTGTG)n Simple_repeat Simple_repeat 2 40 0 555 196 14 20 chr9 21771263 21771411 -120500033 - L1MB3 LINE L1 -1 6182 6036 13663 209 16 12 chr9 21771412 21776054 -120495390 - L1PB1 LINE L1 -4 6863 2145 1176 222 146 38 chr9 21776088 21776566 -120494878 + LTR10B LTR ERV1 15 544 -3 3626 159 29 17 chr9 21776579 21777340 -120494104 - L1PB1 LINE L1 -4635 2227 1387 814 229 5 0 chr9 21777340 21777528 -120493916 - L1PB1 LINE L1 -6669 194 6 3649 180 45 7 chr9 21777547 21778468 -120492976 - L1MB4 LINE L1 -119 6061 5095 428 214 8 16 chr9 21778484 21778610 -120492834 - L1MC4 LINE L1 0 8042 7918 331 263 15 45 chr9 21778765 21778898 -120492546 - LTR52 LTR ERVL -260 161 33 837 212 18 12 chr9 21778898 21779063 -120492381 + AluJo SINE Alu 117 282 -30 1732 246 50 12 chr9 21779115 21779681 -120491763 - L1MC4a LINE L1 -991 6817 6231 1123 198 118 4 chr9 21779687 21779924 -120491520 + AluJo SINE Alu 2 265 -47 2188 277 67 54 chr9 21779931 21781653 -120489791 - L1MC4a LINE L1 -743 5403 3705 16097 39 1 1 chr9 21781653 21784399 -120487045 - L1PA3 LINE L1 0 6155 3410 2188 277 67 54 chr9 21784399 21784548 -120486896 - L1MC4a LINE L1 -2441 3705 3559 422 209 22 108 chr9 21784548 21784687 -120486757 - FLAM_A SINE Alu -2 131 5 2188 277 67 54 chr9 21784687 21784995 -120486449 - L1MC4a LINE L1 -2587 3559 3998 280 43 21 21 chr9 21784995 21785042 -120486402 + (TG)n Simple_repeat Simple_repeat 2 48 0 2188 277 67 54 chr9 21785042 21785946 -120485498 - L1MC4a LINE L1 -2147 3999 3108 21 0 0 0 chr9 21785966 21785987 -120485457 + AT_rich Low_complexity Low_complexity 1 21 0 235 48 24 24 chr9 21786004 21786046 -120485398 + (CA)n Simple_repeat Simple_repeat 1 42 0 253 336 68 4 chr9 21786091 21786341 -120485103 + L1M4 LINE L1 4058 4323 -1823 808 206 19 37 chr9 21786495 21786709 -120484735 - L1MA9 LINE L1 -71 6241 6032 358 245 66 0 chr9 21786706 21786812 -120484632 + L1MA9 LINE L1 5939 6051 -261 * 2219 113 3 3 chr9 21786911 21787221 -120484223 - AluSp SINE Alu -3 310 1 234 256 152 16 chr9 21787389 21787514 -120483930 - HAL1b LINE L1 -846 502 361 182 83 0 0 chr9 21787520 21787544 -120483900 + MER5A DNA MER1_type 1 24 -165 1336 135 65 4 chr9 21787545 21787805 -120483639 + L1MA2 LINE L1 6025 6300 -4 38 0 0 0 chr9 21787807 21787845 -120483599 + AT_rich Low_complexity Low_complexity 1 38 0 581 195 152 6 chr9 21787849 21788013 -120483431 + Charlie1a DNA MER1_type 37 224 -1231 * 1634 226 19 2 chr9 21787998 21788409 -120483035 + Charlie1a DNA MER1_type 330 747 -708 1894 184 110 7 chr9 21788573 21789153 -120482291 + Charlie1a DNA MER1_type 754 1393 -62 1136 218 44 75 chr9 21789157 21789554 -120481890 + MLT2D LTR ERVL 1 409 -111 2100 125 44 39 chr9 21789554 21789915 -120481529 - THE1B LTR MaLR 0 364 2 426 85 0 0 chr9 21789919 21789978 -120481466 + (TCCG)n Simple_repeat Simple_repeat 2 60 0 1136 218 44 75 chr9 21789978 21790005 -120481439 + MLT2D LTR ERVL 412 512 -8 269 226 16 0 chr9 21790009 21790071 -120481373 + Charlie1a DNA MER1_type 1393 1455 0 371 265 157 27 chr9 21790159 21790344 -120481100 - HAL1b LINE L1 -1088 260 52 2676 39 3 0 chr9 21791580 21791890 -120479554 - AluY SINE Alu 0 311 1 7005 235 15 14 chr9 21793038 21794682 -120476762 - L1PA12 LINE L1 -5936 1645 1 401 171 14 0 chr9 21795099 21795169 -120476275 + L2 LINE L2 3243 3313 0 1924 152 3 13 chr9 21797068 21797371 -120474073 + AluJo SINE Alu 1 300 -12 318 110 0 55 chr9 21797868 21797941 -120473503 + (GGAA)n Simple_repeat Simple_repeat 2 70 0 437 190 141 63 chr9 21797946 21798088 -120473356 + MER63A DNA MER1_type 57 209 -1 8118 39 0 0 chr9 21800751 21802504 -120468940 - L1PA4 LINE L1 -8 6147 4397 1589 25 0 0 chr9 21802504 21802702 -120468742 + L1PA4 LINE L1 4201 4398 -1748 274 282 24 40 chr9 21802704 21802828 -120468616 + L1MC4a LINE L1 5627 5748 -2060 302 339 109 5 chr9 21802845 21803037 -120468407 + L1MC4a LINE L1 5826 6037 -1771 846 217 86 64 chr9 21803067 21803441 -120468003 - MLT1B LTR MaLR -8 382 1 1441 217 56 38 chr9 21804953 21805450 -120465994 - L1MA9 LINE L1 -25 6287 5782 452 87 0 43 chr9 21805455 21805547 -120465897 + (TA)n Simple_repeat Simple_repeat 2 89 0 370 150 0 0 chr9 21805568 21805628 -120465816 + L1M3 LINE L1 5685 5744 -590 672 215 96 38 chr9 21805714 21805975 -120465469 - MLT1C LTR MaLR 0 467 192 274 296 136 41 chr9 21805993 21806162 -120465282 + MIR3 SINE MIR 10 194 -14 2278 137 3 0 chr9 21806216 21806558 -120464886 - MER2 DNA MER2_type -1 343 1 673 284 65 35 chr9 21806932 21807161 -120464283 + MIR SINE MIR 8 243 -19 348 275 162 7 chr9 21807336 21807478 -120463966 - MIR3 SINE MIR -4 204 41 579 126 0 0 chr9 21807752 21807847 -120463597 + (TTCC)n Simple_repeat Simple_repeat 4 98 0 322 271 90 15 chr9 21808424 21808557 -120462887 - MIR SINE MIR -115 147 5 552 306 57 26 chr9 21810392 21810657 -120460787 - L3 LINE CR1 -887 690 418 205 242 137 112 chr9 21810744 21810905 -120460539 + MIR SINE MIR 97 261 -1 250 356 185 33 chr9 21810979 21811249 -120460195 - L3 LINE CR1 -1235 342 32 320 319 58 26 chr9 21811702 21811893 -120459551 + MIR SINE MIR 11 207 -55 6848 58 12 9 chr9 21811945 21813366 -120458078 + L1PA6 LINE L1 4728 6152 -2 350 227 21 0 chr9 21814020 21814117 -120457327 - MER103 DNA DNA -65 101 3 198 354 0 0 chr9 21814413 21814478 -120456966 + MER5A DNA MER1_type 1 65 -124 5430 124 37 31 chr9 21814489 21814840 -120456604 + L1MA8 LINE L1 5148 5495 -796 2100 116 3 7 chr9 21814840 21815150 -120456294 + AluSc SINE Alu 1 309 0 5430 124 37 31 chr9 21815150 21815936 -120455508 + L1MA8 LINE L1 5495 6289 -2 2549 68 0 0 chr9 21815956 21816267 -120455177 + AluY SINE Alu 1 311 0 272 220 187 22 chr9 21816275 21816366 -120455078 + MER5A DNA MER1_type 74 179 -10 194 302 32 56 chr9 21816460 21816586 -120454858 - L2 LINE L2 -3 3269 3147 412 356 20 10 chr9 21817178 21817380 -120454064 + MIR SINE MIR 47 250 -12 366 324 50 27 chr9 21818048 21818307 -120453137 + L2 LINE L2 2825 3089 -183 294 160 0 0 chr9 21818405 21818455 -120452989 + MER5A DNA MER1_type 57 106 -83 296 290 93 9 chr9 21818506 21818613 -120452831 + L2 LINE L2 3134 3249 -23 2007 209 63 29 chr9 21819027 21819515 -120451929 + MLT1D LTR MaLR 1 505 0 237 65 0 0 chr9 21819634 21819665 -120451779 + (T)n Simple_repeat Simple_repeat 1 31 0 22 0 0 0 chr9 21820954 21820976 -120450468 + AT_rich Low_complexity Low_complexity 1 22 0 539 282 42 35 chr9 21821083 21821277 -120450167 - MIR SINE MIR -60 202 10 26 0 0 0 chr9 21821293 21821319 -120450125 + AT_rich Low_complexity Low_complexity 1 26 0 674 263 77 16 chr9 21821320 21821514 -120449930 + MIR SINE MIR 47 252 -10 231 389 12 0 chr9 21822122 21822289 -120449155 + L1ME LINE L1 5614 5782 -380 452 290 23 22 chr9 21823043 21823203 -120448241 + MER5A DNA MER1_type 24 175 -3 786 247 0 33 chr9 21823204 21823386 -120448058 + MER5B DNA MER1_type 3 178 0 21 0 0 0 chr9 21823512 21823533 -120447911 + AT_rich Low_complexity Low_complexity 1 21 0 30 27 0 0 chr9 21824055 21824092 -120447352 + AT_rich Low_complexity Low_complexity 1 37 0 302 306 127 30 chr9 21824445 21824579 -120446865 + L1MC/D LINE L1 4672 4818 -1328 231 125 0 0 chr9 21825407 21825447 -120445997 + (CA)n Simple_repeat Simple_repeat 2 41 0 537 268 96 4 chr9 21825572 21825822 -120445622 - L1ME3A LINE L1 -215 5955 5683 533 250 62 10 chr9 21825880 21826189 -120445255 - L1ME3A LINE L1 -611 5553 5219 246 214 54 18 chr9 21826488 21826600 -120444844 + L1MC/D LINE L1 5291 5406 -758 22 35 0 0 chr9 21826604 21826633 -120444811 + AT_rich Low_complexity Low_complexity 1 29 0 257 268 94 14 chr9 21826743 21826881 -120444563 + L1MC/D LINE L1 5575 5723 -2085 328 314 45 19 chr9 21827021 21827177 -120444267 + Charlie8 DNA MER1_type 61 220 -2197 655 225 142 87 chr9 21827314 21827865 -120443579 - L1ME4a LINE L1 -3 6118 5538 2050 143 10 0 chr9 21828000 21828301 -120443143 - AluJb SINE Alu -8 304 1 273 29 0 0 chr9 21829224 21829258 -120442186 + (TC)n Simple_repeat Simple_repeat 1 34 0 2137 115 3 40 chr9 21830280 21830603 -120440841 - AluSx SINE Alu -1 311 1 1668 231 91 30 chr9 21830762 21831287 -120440157 - MER69 DNA AcHobo -1969 557 1 326 290 150 5 chr9 21831288 21831481 -120439963 - MARNA DNA Mariner -128 458 238 21 0 0 0 chr9 21832229 21832250 -120439194 + AT_rich Low_complexity Low_complexity 1 21 0 252 0 0 0 chr9 21832623 21832651 -120438793 + (TG)n Simple_repeat Simple_repeat 2 29 0 209 171 0 0 chr9 21833635 21833670 -120437774 + MER5A DNA MER1_type 155 189 0 290 246 191 16 chr9 21833979 21834105 -120437339 + MIR3 SINE MIR 61 208 0 763 196 0 0 chr9 21834118 21834296 -120437148 + FLAM_C SINE Alu 1 178 0 5753 177 46 107 chr9 21834609 21835299 -120436145 + Charlie1 DNA MER1_type 887 1618 -1143 2232 109 0 7 chr9 21835299 21835601 -120435843 - AluY SINE Alu -11 300 1 5753 177 46 107 chr9 21835601 21835923 -120435521 + Charlie1 DNA MER1_type 1618 1958 -803 2323 109 0 10 chr9 21835923 21836235 -120435209 + AluY SINE Alu 1 309 -2 5753 177 46 107 chr9 21836235 21837043 -120434401 + Charlie1 DNA MER1_type 1958 2596 -165 317 206 49 108 chr9 21837204 21837225 -120434219 + Charlie1 DNA MER1_type 2570 2591 -170 2082 88 33 0 chr9 21837225 21837523 -120433921 - AluSg SINE Alu 0 307 1 317 206 49 108 chr9 21837523 21837704 -120433740 + Charlie1 DNA MER1_type 2591 2761 0 216 376 120 0 chr9 21837734 21837859 -120433585 + L2 LINE L2 3133 3272 0 211 277 48 48 chr9 21838340 21838423 -120433021 + L2 LINE L2 3185 3267 -5 302 273 182 49 chr9 21838472 21838615 -120432829 - L2 LINE L2 0 3272 3111 570 258 129 5 chr9 21839700 21839894 -120431550 + MIR SINE MIR 45 262 0 2062 60 24 94 chr9 21841218 21841549 -120429895 - AluYb8 SINE Alu -10 308 1 2183 113 3 0 chr9 21841976 21842267 -120429177 + AluSp SINE Alu 1 292 -21 1437 110 0 0 chr9 21843114 21843296 -120428148 + AluSx SINE Alu 1 182 -130 237 189 19 0 chr9 21843519 21843572 -120427872 + (TA)n Simple_repeat Simple_repeat 1 54 0 375 271 181 23 chr9 21843587 21843642 -120427802 + L1M4 LINE L1 2758 2803 -3343 1952 123 7 7 chr9 21843642 21843943 -120427501 + L1PA10 LINE L1 5868 6168 0 375 271 181 23 chr9 21843943 21844153 -120427291 + L1M4 LINE L1 2803 3065 -3081 244 257 139 10 chr9 21844534 21844635 -120426809 - MIR SINE MIR 0 262 149 1164 189 35 2 chr9 21844646 21844912 -120426532 - L1MB1 LINE L1 -231 5937 5693 931 191 77 23 chr9 21844905 21845077 -120426367 + L1MB1 LINE L1 5936 6124 -44 * 2268 97 3 10 chr9 21845077 21845385 -120426059 + AluY SINE Alu 1 306 -5 931 191 77 23 chr9 21845385 21845432 -120426012 + L1MB1 LINE L1 6124 6167 -1 273 383 13 40 chr9 21845456 21845605 -120425839 + L2 LINE L2 3126 3270 -2 2101 152 0 6 chr9 21845747 21846102 -120425342 - MLT1A1 LTR MaLR -12 353 1 22 56 0 0 chr9 21846195 21846231 -120425213 + AT_rich Low_complexity Low_complexity 1 36 0 1627 232 46 23 chr9 21847740 21848218 -120423226 + L1ME3A LINE L1 5657 6145 -25 811 222 22 5 chr9 21849467 21849652 -120421792 - MLT1E LTR MaLR 0 593 406 271 292 45 0 chr9 21851683 21851772 -120419672 - L2 LINE L2 0 3313 3221 412 302 94 7 chr9 21851994 21852143 -120419301 - L2 LINE L2 -684 2630 2469 395 385 31 10 chr9 21852273 21852468 -120418976 + HAL1 LINE L1 1256 1454 -1053 343 328 64 0 chr9 21852468 21852639 -120418805 + L1MC/D LINE L1 1512 1693 -4703 22 56 0 0 chr9 21852720 21852756 -120418688 + AT_rich Low_complexity Low_complexity 1 36 0 363 306 65 26 chr9 21852918 21853147 -120418297 + L1MC/D LINE L1 2061 2298 -4098 560 279 172 31 chr9 21853212 21854083 -120417361 + L1MC/D LINE L1 3661 4654 -1561 581 163 0 0 chr9 21854099 21854191 -120417253 + FLAM_C SINE Alu 14 105 -38 307 325 36 34 chr9 21854317 21854548 -120416896 + L1MC/D LINE L1 4806 5040 -1175 1859 151 43 32 chr9 21854548 21854918 -120416526 - THE1C LTR MaLR 0 375 2 307 325 36 34 chr9 21854918 21855043 -120416401 + L1MC/D LINE L1 5040 5163 -1052 287 330 19 19 chr9 21855078 21855293 -120416151 + L1MC/D LINE L1 5450 5664 -575 237 271 0 0 chr9 21855387 21855435 -120416009 + G-rich Low_complexity Low_complexity 4 51 0 201 39 0 0 chr9 21855437 21855463 -120415981 + (GGGA)n Simple_repeat Simple_repeat 3 28 0 1100 216 186 43 chr9 21855501 21855899 -120415545 + LTR16A1 LTR ERVL 1 455 -2 230 253 131 0 chr9 21855996 21856095 -120415349 + L1MC/D LINE L1 5728 5839 -2038 28 29 0 0 chr9 21856295 21856330 -120415114 + AT_rich Low_complexity Low_complexity 1 35 0 295 320 0 0 chr9 21856667 21856742 -120414702 + polypurine Low_complexity Low_complexity 2 76 0 740 288 37 21 chr9 21859940 21860183 -120411261 + MIR SINE MIR 2 248 -14 209 190 224 0 chr9 21860252 21860310 -120411134 - L2 LINE L2 -1 3271 3201 41988 42 2 1 chr9 21860479 21866617 -120404827 - L1PA4 LINE L1 -3 6152 7 358 240 139 62 chr9 21866645 21866774 -120404670 + L2 LINE L2 3134 3272 0 214 150 25 0 chr9 21868015 21868055 -120403389 - L2 LINE L2 -18 3254 3214 296 318 28 9 chr9 21868086 21868193 -120403251 - MIR SINE MIR -133 129 21 345 328 66 11 chr9 21868895 21869078 -120402366 - MIR SINE MIR -11 251 59 273 337 0 0 chr9 21869361 21869462 -120401982 - MER115 DNA AcHobo -258 435 335 1093 209 58 102 chr9 21869479 21869872 -120401572 + MLT1B LTR MaLR 15 390 0 663 146 15 102 chr9 21869934 21870140 -120401304 - MER53 DNA DNA 0 189 2 308 246 0 0 chr9 21870276 21870341 -120401103 - Zaphod DNA AcHobo -3966 65 1 263 188 0 0 chr9 21870418 21870466 -120400978 + MIR SINE MIR 90 137 -125 1103 233 90 41 chr9 21870570 21870960 -120400484 + MLT2B1 LTR ERVL 112 520 0 333 169 145 12 chr9 21870960 21871042 -120400402 - MLT1B LTR MaLR -297 93 1 1044 144 0 19 chr9 21871758 21871918 -120399526 + FRAM SINE Alu 1 157 -9 1100 263 127 49 chr9 21872023 21872678 -120398766 + MER50 LTR ERV1 10 715 -19 358 336 149 5 chr9 21874342 21874556 -120396888 + MIR SINE MIR 5 249 -13 24 0 0 0 chr9 21876169 21876193 -120395251 + AT_rich Low_complexity Low_complexity 1 24 0 228 222 0 0 chr9 21876535 21876580 -120394864 + (CA)n Simple_repeat Simple_repeat 2 46 0 189 239 82 114 chr9 21878041 21878225 -120393219 - L2 LINE L2 -12 3301 3124 645 248 139 0 chr9 21878767 21878997 -120392447 - MIR SINE MIR 0 262 1 265 260 13 39 chr9 21879132 21879209 -120392235 - L2 LINE L2 0 3313 3239 1778 209 22 6 chr9 21880318 21880677 -120390767 + MLT1A1 LTR MaLR 1 365 0 497 247 142 5 chr9 21880775 21880965 -120390479 + MIR SINE MIR 46 261 -1 292 314 38 9 chr9 21880996 21881101 -120390343 + MIR SINE MIR 21 128 -80 1835 152 37 39 chr9 21881300 21881655 -120389789 - MLT1A1 LTR MaLR -2 363 10 252 167 21 0 chr9 21882456 21882504 -120388940 + L2 LINE L2 3246 3294 -19 2604 129 48 22 chr9 21883121 21883538 -120387906 + MSTC LTR MaLR 1 428 0 2625 160 21 9 chr9 21884675 21885112 -120386332 - MSTB2 LTR MaLR -1 456 15 563 130 113 9 chr9 21885482 21885597 -120385847 - L2 LINE L2 0 3313 3187 25 65 0 0 chr9 21885604 21885650 -120385794 + AT_rich Low_complexity Low_complexity 1 46 0 278 283 17 42 chr9 21887548 21887668 -120383776 - LTR67 LTR ERVL 0 557 441 228 208 42 0 chr9 21887801 21887849 -120383595 - LTR67 LTR ERVL -393 164 115 1727 220 40 26 chr9 21888047 21888212 -120383232 + MER39 LTR ERV1 271 432 -275 2286 117 22 30 chr9 21888212 21888579 -120382865 + THE1B LTR MaLR 1 364 0 1727 220 40 26 chr9 21888579 21888841 -120382603 + MER39 LTR ERV1 432 704 -3 398 309 52 56 chr9 21888889 21889122 -120382322 - L2 LINE L2 -36 3277 3046 * 529 314 30 21 chr9 21889107 21889343 -120382101 - L2 LINE L2 -444 2870 2633 2357 146 6 6 chr9 21890507 21890871 -120380573 - THE1B LTR MaLR 0 364 1 10548 96 16 71 chr9 21890871 21891943 -120379501 - THE1C-int LTR MaLR 0 1580 631 7227 55 2 3 chr9 21891943 21893070 -120378374 + L1PA5 LINE L1 5027 6153 -1 10548 96 16 71 chr9 21893070 21893668 -120377776 - THE1C-int LTR MaLR -949 631 2 2451 128 5 13 chr9 21893669 21894045 -120377399 - THE1C LTR MaLR 0 375 3 2308 119 0 0 chr9 21894070 21894380 -120377064 + AluSq SINE Alu 1 310 -3 1290 255 76 24 chr9 21894896 21895315 -120376129 - LTR16A1 LTR ERVL 0 457 17 669 261 157 22 chr9 21895454 21895772 -120375672 + MLT1D LTR MaLR 1 361 -144 1852 142 0 0 chr9 21895776 21896051 -120375393 - AluJb SINE Alu -37 275 1 2010 232 24 20 chr9 21896129 21896634 -120374810 - L1ME3A LINE L1 0 6170 5664 669 223 62 5 chr9 21896632 21896825 -120374619 - L1ME3A LINE L1 -1567 4579 4376 * 438 259 52 59 chr9 21897569 21897839 -120373605 - L1ME4a LINE L1 -279 5842 5575 284 322 58 53 chr9 21898533 21898704 -120372740 - MIR SINE MIR -55 207 36 467 239 127 0 chr9 21898794 21898928 -120372516 - MER117 DNA MER1_type -37 160 10 251 277 19 129 chr9 21898957 21899213 -120372231 - MER102b DNA MER1_type -10 331 104 888 268 123 40 chr9 21900058 21900480 -120370964 - MLT1L LTR MaLR 0 615 159 187 374 0 12 chr9 21900830 21900913 -120370531 - MIR3 SINE MIR -118 90 9 196 312 11 54 chr9 21900982 21901075 -120370369 - MIR SINE MIR -70 192 104 795 189 11 44 chr9 21901947 21902127 -120369317 + MER5B DNA MER1_type 5 178 0 289 224 0 0 chr9 21902756 21902814 -120368630 - L2 LINE L2 -8 3264 3207 2250 138 19 11 chr9 21903160 21903521 -120367923 - THE1B LTR MaLR 0 364 1 349 223 146 19 chr9 21903623 21903726 -120367718 + MER117 DNA MER1_type 2 117 -80 1010 292 157 14 chr9 21903786 21904253 -120367191 - MLT1G1 LTR MaLR 0 595 1 1763 160 121 8 chr9 21904302 21904658 -120366786 - MSTD LTR MaLR 0 396 1 252 0 0 0 chr9 21905343 21905371 -120366073 + (CA)n Simple_repeat Simple_repeat 2 29 0 582 261 79 19 chr9 21906013 21906228 -120365216 + MIR SINE MIR 29 256 -6 534 168 37 0 chr9 21906512 21906619 -120364825 + MLT1D LTR MaLR 1 111 -394 485 127 0 0 chr9 21906623 21906694 -120364750 + MLT2B2 LTR ERVL 1 71 -483 1644 222 62 44 chr9 21906791 21907183 -120364261 + MLT2B2 LTR ERVL 75 477 -38 868 94 7 7 chr9 21907183 21907321 -120364123 + (TCTA)n Simple_repeat Simple_repeat 4 141 0 1644 222 62 44 chr9 21907321 21907361 -120364083 + MLT2B2 LTR ERVL 477 515 0 * 1827 224 23 8 chr9 21907361 21907758 -120363686 + MLT1D LTR MaLR 103 505 0 22 80 0 0 chr9 21907845 21907895 -120363549 + AT_rich Low_complexity Low_complexity 1 50 0 1119 233 159 43 chr9 21908147 21908228 -120363216 + MSTD LTR MaLR 2 72 -324 1883 168 20 0 chr9 21908228 21908531 -120362913 + AluJb SINE Alu 1 309 -3 1119 233 159 43 chr9 21908531 21908801 -120362643 + MSTD LTR MaLR 72 394 -2 375 94 0 0 chr9 21908989 21909042 -120362402 - MSTD LTR MaLR 0 396 344 1973 87 3 47 chr9 21909077 21909267 -120362177 - L1PB1 LINE L1 0 6151 5977 2377 80 6 22 chr9 21909267 21909579 -120361865 - AluSc SINE Alu -2 307 1 1973 87 3 47 chr9 21909579 21909687 -120361757 - L1PB1 LINE L1 -174 5977 5866 1741 193 16 41 chr9 21909689 21910057 -120361387 - MSTD LTR MaLR -37 359 1 2494 76 3 0 chr9 21910155 21910459 -120360985 - AluY SINE Alu -6 305 1 314 299 65 14 chr9 21910649 21910813 -120360631 + MIR SINE MIR 16 188 -63 185 330 160 0 chr9 21911327 21911421 -120360023 + L2 LINE L2 3164 3272 0 1510 199 14 4 chr9 21911691 21911967 -120359477 - AluJo SINE Alu -29 283 5 369 243 45 27 chr9 21912629 21912740 -120358704 + MIR SINE MIR 106 218 -44 235 331 50 25 chr9 21912976 21913097 -120358347 + MIR SINE MIR 57 180 -82 7792 89 6 19 chr9 21913741 21914827 -120356617 + MER11C LTR ERVK 1 1071 0 234 234 0 31 chr9 21915149 21915213 -120356231 - MER103 DNA DNA -50 116 55 1349 192 112 14 chr9 21915218 21915494 -120355950 + AluJo SINE Alu 2 304 -8 1573 122 11 66 chr9 21915937 21916224 -120355220 + MLT1B LTR MaLR 120 390 0 537 236 39 77 chr9 21916372 21916613 -120354831 - MLT1J LTR MaLR 0 511 313 228 143 41 20 chr9 21916804 21916853 -120354591 - MLT1L LTR MaLR -564 51 2 374 276 61 0 chr9 21916888 21916986 -120354458 + MER94 DNA DNA 10 113 -21 395 217 29 91 chr9 21917143 21917318 -120354126 - MER5A DNA MER1_type -22 167 4 378 289 47 23 chr9 21917742 21917870 -120353574 - L2 LINE L2 -1 3271 3141 1093 252 72 142 chr9 21918471 21918672 -120352772 + MLT1G1 LTR MaLR 1 215 -380 1701 154 100 4 chr9 21918672 21918952 -120352492 + AluSx SINE Alu 1 307 -5 1093 252 72 142 chr9 21918952 21919390 -120352054 + MLT1G1 LTR MaLR 215 595 0 241 347 0 0 chr9 21919506 21919581 -120351863 - MIR SINE MIR -105 157 83 472 271 51 17 chr9 21919627 21919829 -120351615 + MIR SINE MIR 36 242 -20 198 284 60 0 chr9 21919837 21919904 -120351540 + L2 LINE L2 3201 3271 -1 606 270 81 23 chr9 21921091 21921265 -120350179 - MER91A DNA MER1_type -2 194 11 186 351 0 13 chr9 21921454 21921531 -120349913 - L2 LINE L2 -182 3090 3015 2235 169 39 41 chr9 21922704 21922788 -120348656 - MLT1C LTR MaLR 0 467 384 1493 186 59 10 chr9 21922788 21923078 -120348366 - AluJo SINE Alu -8 304 1 2235 169 39 41 chr9 21923078 21923461 -120347983 - MLT1C LTR MaLR -83 384 1 180 0 0 0 chr9 21925151 21925171 -120346273 + (TAAA)n Simple_repeat Simple_repeat 4 23 0 228 229 0 0 chr9 21925186 21925234 -120346210 + L1MC4 LINE L1 6656 6703 -1339 273 57 0 0 chr9 21925238 21925273 -120346171 + (CA)n Simple_repeat Simple_repeat 2 36 0 12548 146 31 28 chr9 21925273 21927312 -120344132 + Ricksha_c DNA DNA 3 2046 0 238 293 0 13 chr9 21927313 21927388 -120344056 - MIR SINE MIR -182 80 7 285 284 173 31 chr9 21928309 21928412 -120343032 - MIR SINE MIR -33 229 142 2230 106 3 3 chr9 21928412 21928713 -120342731 - AluSx SINE Alu -11 301 1 285 284 173 31 chr9 21928713 21928771 -120342673 - MIR SINE MIR -120 142 45 515 237 38 8 chr9 21928857 21928988 -120342456 - MIR SINE MIR -29 233 99 360 285 88 22 chr9 21929926 21930063 -120341381 - MIR SINE MIR -115 147 2 240 254 28 0 chr9 21930228 21930299 -120341145 + (TAGA)n Simple_repeat Simple_repeat 4 76 0 1190 90 6 12 chr9 21930308 21930474 -120340970 - L1MA2 LINE L1 -4 6300 6136 22 0 0 0 chr9 21930918 21930940 -120340504 + AT_rich Low_complexity Low_complexity 1 22 0 350 203 239 22 chr9 21931504 21931642 -120339802 - L1ME4a LINE L1 0 6121 5954 6406 138 34 13 chr9 21931769 21932964 -120338480 - L1MC1 LINE L1 -13 6320 5102 526 293 114 21 chr9 21932974 21933264 -120338180 - L1ME4a LINE L1 -299 5822 5506 412 272 44 63 chr9 21934893 21935051 -120336393 - MIR SINE MIR -77 185 31 2221 102 7 0 chr9 21935295 21935589 -120335855 - AluSc SINE Alu -13 296 1 391 305 58 40 chr9 21935806 21935954 -120335490 - MIR SINE MIR -37 225 72 2395 137 40 13 chr9 21935954 21936334 -120335110 - MLT1B LTR MaLR 0 390 1 391 305 58 40 chr9 21936334 21936359 -120335085 - MIR SINE MIR -190 72 49 180 0 0 0 chr9 21936506 21936526 -120334918 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2214 97 0 3 chr9 21936873 21937161 -120334283 - AluSx SINE Alu -3 309 23 1346 241 96 7 chr9 21937174 21937602 -120333842 + MER113 DNA MER1_type? 6 471 -50 347 173 130 130 chr9 21938147 21938332 -120333112 + MER5A DNA MER1_type 4 188 -1 355 339 33 6 chr9 21938455 21938638 -120332806 + MIR SINE MIR 52 239 -23 548 283 80 26 chr9 21938649 21939021 -120332423 - L2 LINE L2 -6 3307 2874 200 265 48 24 chr9 21939651 21939734 -120331710 - MIR SINE MIR -70 192 108 445 200 19 90 chr9 21939967 21940122 -120331322 - MLT1D LTR MaLR -361 144 1 180 297 22 44 chr9 21940998 21941089 -120330355 - L2 LINE L2 -5 3267 3179 1550 294 93 47 chr9 21941805 21942906 -120328538 - L2 LINE L2 -1 3312 2158 300 322 67 38 chr9 21943267 21943686 -120327758 + L1MC/D LINE L1 3991 4421 -1725 533 281 122 50 chr9 21943733 21944619 -120326825 + L1MC/D LINE L1 4633 5615 -974 2377 92 0 3 chr9 21944619 21944925 -120326519 - AluY SINE Alu -6 305 1 533 281 122 50 chr9 21944925 21945118 -120326326 + L1MC/D LINE L1 5615 5793 -796 188 269 96 0 chr9 21945524 21945576 -120325868 + MIR SINE MIR 206 262 0 229 273 0 15 chr9 21945930 21945996 -120325448 + MLT1K LTR MaLR 182 246 -342 180 0 0 0 chr9 21946307 21946327 -120325117 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1021 201 159 70 chr9 21946615 21947012 -120324432 - MSTB1 LTR MaLR 0 432 1 1621 215 49 62 chr9 21947012 21947478 -120323966 - MLT1C LTR MaLR -7 460 1 488 281 75 26 chr9 21947532 21947966 -120323478 - LTR33A LTR ERVL -20 503 4 724 209 0 0 chr9 21948933 21949062 -120322382 - FRAM SINE Alu -19 157 29 192 271 0 21 chr9 21949752 21949800 -120321644 + L2 LINE L2 3267 3313 0 310 276 127 15 chr9 21950567 21950701 -120320743 - L2 LINE L2 -2 3270 3122 470 250 0 10 chr9 21953379 21953475 -120317969 - MER5B DNA MER1_type -16 162 68 1436 191 118 0 chr9 21954114 21954376 -120317068 + AluJb SINE Alu 1 293 -9 255 221 59 0 chr9 21956670 21956738 -120314706 - MIR SINE MIR -10 252 181 499 218 148 0 chr9 21956749 21956891 -120314553 + L2 LINE L2 2686 2848 -466 329 257 191 14 chr9 21956987 21957197 -120314247 + L2 LINE L2 3020 3266 -47 336 193 104 0 chr9 21957237 21957331 -120314113 - MIR SINE MIR -62 146 57 280 324 157 0 chr9 21957771 21957879 -120313565 + L2 LINE L2 3148 3272 0 2016 128 3 46 chr9 21958196 21958523 -120312921 + AluSq SINE Alu 1 313 0 1521 228 137 30 chr9 21958950 21959075 -120312369 + MLT1E LTR MaLR 70 180 -413 2360 92 0 0 chr9 21959075 21959370 -120312074 - AluSc SINE Alu -14 295 1 1521 228 137 30 chr9 21959370 21959717 -120311727 + MLT1E LTR MaLR 180 593 0 331 337 70 26 chr9 21959830 21960100 -120311344 + L2 LINE L2 2693 2974 -340 21 36 0 0 chr9 21962542 21962570 -120308874 + AT_rich Low_complexity Low_complexity 1 28 0 618 266 176 37 chr9 21962845 21963422 -120308022 + L1MC4 LINE L1 7276 8029 -13 22 0 0 0 chr9 21963422 21963444 -120308000 + AT_rich Low_complexity Low_complexity 1 22 0 305 265 17 77 chr9 21963998 21964115 -120307329 - MER5A DNA MER1_type -25 164 55 267 270 180 0 chr9 21964171 21964282 -120307162 + MER5B DNA MER1_type 9 139 -39 439 242 105 16 chr9 21964282 21964406 -120307038 + MER5B DNA MER1_type 13 147 -31 261 278 0 56 chr9 21964826 21964898 -120306546 + L2 LINE L2 3240 3307 -6 2128 216 64 15 chr9 21965138 21965316 -120306128 + MLT1D LTR MaLR 1 169 -336 1849 157 14 3 chr9 21965316 21965603 -120305841 + AluJo SINE Alu 7 296 -16 2128 216 64 15 chr9 21965603 21965905 -120305539 + MLT1D LTR MaLR 169 505 0 549 299 72 23 chr9 21966850 21967071 -120304373 - MIR SINE MIR -1 261 30 554 222 50 23 chr9 21967724 21967865 -120303579 + MER39 LTR ERV1 1 125 -484 2254 84 3 3 chr9 21967896 21968183 -120303261 + AluSq SINE Alu 2 288 -25 1658 188 116 8 chr9 21968183 21968544 -120302900 + MER39 LTR ERV1 308 707 0 559 231 0 0 chr9 21968658 21968762 -120302682 - MER94 DNA DNA -4 130 27 832 270 6 0 chr9 21968762 21968936 -120302508 + FAM SINE Alu 1 175 0 2376 80 0 10 chr9 21969097 21969409 -120302035 + AluY SINE Alu 1 309 -2 368 222 52 67 chr9 21969487 21969622 -120301822 + MER103 DNA DNA 19 151 -15 495 249 85 30 chr9 21969686 21969851 -120301593 - L2 LINE L2 -5 3308 3135 513 32 0 0 chr9 21970309 21970372 -120301072 + (CA)n Simple_repeat Simple_repeat 1 63 0 22 0 0 0 chr9 21972111 21972133 -120299311 + AT_rich Low_complexity Low_complexity 1 22 0 291 93 0 0 chr9 21973011 21973054 -120298390 + (TA)n Simple_repeat Simple_repeat 2 44 0 270 0 0 0 chr9 21973371 21973401 -120298043 + (A)n Simple_repeat Simple_repeat 1 30 0 25 0 0 0 chr9 21974563 21974588 -120296856 + AT_rich Low_complexity Low_complexity 1 25 0 186 71 0 0 chr9 21976566 21976594 -120294850 + (A)n Simple_repeat Simple_repeat 1 28 0 231 114 0 0 chr9 21977262 21977297 -120294147 + (A)n Simple_repeat Simple_repeat 1 35 0 445 259 38 8 chr9 21977314 21977445 -120293999 + L1ME3A LINE L1 5983 6117 -53 364 371 54 5 chr9 21977615 21977836 -120293608 - L1M4 LINE L1 -1991 4155 3924 346 309 43 68 chr9 21978572 21978850 -120292594 + MLT1J LTR MaLR 216 486 -25 200 184 0 0 chr9 21979005 21979043 -120292401 + (CA)n Simple_repeat Simple_repeat 1 38 0 321 318 45 32 chr9 21979309 21979500 -120291944 + MIR SINE MIR 20 208 -54 2677 23 0 0 chr9 21980501 21980803 -120290641 + AluYa5 SINE Alu 1 302 -9 198 0 0 0 chr9 21985283 21985305 -120286139 + (A)n Simple_repeat Simple_repeat 1 22 0 206 324 68 0 chr9 21986141 21986215 -120285229 + MIR SINE MIR 12 90 -172 192 351 0 0 chr9 21986223 21986280 -120285164 + MIR3 SINE MIR 137 193 -15 218 255 0 0 chr9 21988117 21988164 -120283280 + CT-rich Low_complexity Low_complexity 5 51 0 306 0 0 0 chr9 21988169 21988203 -120283241 + (CA)n Simple_repeat Simple_repeat 1 34 0 2321 66 33 7 chr9 21989062 21989363 -120282081 + AluSc SINE Alu 1 309 0 340 260 72 11 chr9 21990385 21990545 -120280899 - MIR SINE MIR 0 262 93 579 271 187 5 chr9 21991158 21991372 -120280072 - MIR SINE MIR -8 254 2 198 0 0 0 chr9 21992894 21992916 -120278528 + (T)n Simple_repeat Simple_repeat 1 22 0 1697 102 8 43 chr9 21995511 21995802 -120275642 - AluY SINE Alu 0 315 34 629 56 34 0 chr9 21996232 21996248 -120275196 + L1P LINE L1 5332 5346 -826 5753 50 10 1 chr9 21996248 21996970 -120274474 - L1PA7 LINE L1 -11 6143 5416 629 56 34 0 chr9 21996970 21997042 -120274402 + L1P LINE L1 5346 5423 -749 191 313 26 70 chr9 21997524 21997639 -120273805 + L2 LINE L2 3136 3245 -27 520 171 45 96 chr9 21999152 21999351 -120272093 - MER5A DNA MER1_type 0 189 1 213 284 68 26 chr9 21999419 21999514 -120271930 - MER5A DNA MER1_type -79 110 1 14638 119 30 12 chr9 22000351 22000704 -120270740 + Tigger1 DNA MER2_type 108 453 -1965 2169 118 0 0 chr9 22000704 22000993 -120270451 - AluSq SINE Alu -19 294 6 14638 119 30 12 chr9 22000993 22002580 -120268864 + Tigger1 DNA MER2_type 453 2097 -321 2162 70 32 64 chr9 22002580 22002894 -120268550 - AluY SINE Alu -7 304 1 14638 119 30 12 chr9 22002894 22003221 -120268223 + Tigger1 DNA MER2_type 2097 2417 -1 1878 164 0 3 chr9 22004287 22004579 -120266865 + AluJo SINE Alu 1 291 -21 1557 203 54 41 chr9 22005000 22005362 -120266082 + MLT1A2 LTR MaLR 12 374 0 264 269 168 34 chr9 22005384 22005503 -120265941 - MIR3 SINE MIR -66 142 8 2488 65 0 3 chr9 22005782 22006092 -120265352 - AluY SINE Alu 0 311 3 192 405 33 8 chr9 22006815 22006936 -120264508 - L3b LINE CR1 -282 1301 1178 235 201 13 141 chr9 22008288 22008437 -120263007 + Charlie7 DNA MER1_type 2433 2562 -50 23 68 0 0 chr9 22011813 22011857 -120259587 + AT_rich Low_complexity Low_complexity 1 44 0 621 293 74 33 chr9 22013576 22013818 -120257626 + MIR SINE MIR 11 262 0 21 36 0 0 chr9 22013830 22013858 -120257586 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr9 22015240 22015265 -120256179 + AT_rich Low_complexity Low_complexity 1 25 0 1049 220 13 47 chr9 22017280 22017512 -120253932 - MER58A DNA MER1_type 0 224 1 2251 92 0 0 chr9 22018493 22018786 -120252658 + AluY SINE Alu 1 293 -18 1957 207 9 29 chr9 22019232 22019676 -120251768 + L1MB8 LINE L1 5676 6110 -68 1554 199 3 18 chr9 22019681 22019963 -120251481 + AluJo SINE Alu 3 280 -32 206 167 0 48 chr9 22019964 22020006 -120251438 + GA-rich Low_complexity Low_complexity 1 40 0 304 309 0 12 chr9 22020674 22020758 -120250686 - L2 LINE L2 -21 3251 3169 661 226 0 0 chr9 22021018 22021133 -120250311 + FLAM_A SINE Alu 1 115 -18 512 148 33 66 chr9 22021160 22021282 -120250162 - L1ME3 LINE L1 -6 6156 6039 22 35 0 0 chr9 22022081 22022110 -120249334 + AT_rich Low_complexity Low_complexity 1 29 0 1203 344 155 20 chr9 22022403 22023081 -120248363 - L3 LINE CR1 -372 1205 379 2099 98 4 7 chr9 22023081 22023355 -120248089 + AluSq SINE Alu 22 294 -19 1203 344 155 20 chr9 22023355 22023558 -120247886 - L3 LINE CR1 -1198 379 205 366 250 202 27 chr9 22026514 22026702 -120244742 - MIR SINE MIR -13 249 29 1215 182 105 0 chr9 22028295 22028553 -120242891 - AluJo SINE Alu -16 296 12 234 262 83 12 chr9 22029539 22029623 -120241821 - L2 LINE L2 -16 3297 3208 2129 217 75 70 chr9 22029985 22030908 -120240536 + L1MC5 LINE L1 6991 7917 -44 206 304 152 22 chr9 22031377 22031469 -120239975 + L2 LINE L2 3206 3309 -4 874 257 63 73 chr9 22031666 22032063 -120239381 - MLT1J LTR MaLR -114 397 5 244 261 117 27 chr9 22033332 22033443 -120238001 + MIR3 SINE MIR 88 208 0 1829 171 0 10 chr9 22034006 22034305 -120237139 - AluJb SINE Alu -14 298 3 1701 188 7 3 chr9 22034700 22034992 -120236452 - AluJo SINE Alu -19 293 1 26 0 0 0 chr9 22035150 22035176 -120236268 + AT_rich Low_complexity Low_complexity 1 26 0 231 227 61 61 chr9 22035684 22035750 -120235694 + MIR SINE MIR 23 88 -174 2218 126 0 0 chr9 22036016 22036325 -120235119 + AluSx SINE Alu 1 309 -3 628 150 0 26 chr9 22036332 22036445 -120234999 + FLAM_A SINE Alu 21 130 -12 703 251 31 26 chr9 22037856 22038051 -120233393 + MIR SINE MIR 49 244 -18 612 254 73 17 chr9 22040540 22040717 -120230727 - MIR SINE MIR -44 218 32 201 157 0 137 chr9 22041200 22041251 -120230193 - MIR3 SINE MIR -23 185 142 264 261 268 0 chr9 22042134 22042276 -120229168 + MER112 DNA MER1_type 69 248 -12 216 286 18 0 chr9 22043077 22043133 -120228311 + L3 LINE CR1 1519 1575 -2 410 217 9 9 chr9 22043329 22043435 -120228009 + L1MA10 LINE L1 6229 6334 0 1050 32 0 0 chr9 22044463 22044589 -120226855 + (CTG)n Simple_repeat Simple_repeat 1 126 0 192 353 87 17 chr9 22045049 22045222 -120226222 - L2 LINE L2 -237 3035 2851 24 0 0 0 chr9 22046998 22047022 -120224422 + AT_rich Low_complexity Low_complexity 1 24 0 211 28 56 0 chr9 22047363 22047399 -120224045 + (TA)n Simple_repeat Simple_repeat 2 39 0 287 105 40 13 chr9 22047527 22047603 -120223841 + (TA)n Simple_repeat Simple_repeat 2 79 0 479 119 0 0 chr9 22048508 22048575 -120222869 + U4 snRNA snRNA 1 67 -78 969 193 0 11 chr9 22048794 22048970 -120222474 - FAM SINE Alu -1 174 1 590 288 102 65 chr9 22049360 22049894 -120221550 + L1MEd LINE L1 904 1580 -910 1264 143 0 29 chr9 22050040 22050249 -120221195 + AluSc SINE Alu 103 305 -4 801 219 5 21 chr9 22050249 22050441 -120221003 + L1MC4 LINE L1 7697 7885 -157 853 152 0 0 chr9 22051313 22051445 -120219999 - FLAM_A SINE Alu 0 133 2 223 325 25 0 chr9 22052818 22052898 -120218546 + MIR3 SINE MIR 118 199 -9 611 292 32 9 chr9 22052996 22053212 -120218232 - MIR SINE MIR -37 225 5 203 267 13 53 chr9 22053550 22053625 -120217819 - L2 LINE L2 -1115 2199 2128 323 347 25 0 chr9 22054369 22054490 -120216954 + MER91A DNA MER1_type 2 125 -71 1429 175 48 26 chr9 22054525 22054688 -120216756 - AluJo SINE Alu -22 290 117 249 33 0 0 chr9 22054688 22054718 -120216726 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 1429 175 48 26 chr9 22054718 22054822 -120216622 - AluJo SINE Alu -195 117 17 455 189 0 0 chr9 22055253 22055343 -120216101 + AluSg/x SINE Alu 218 307 -2 957 259 98 15 chr9 22058059 22058395 -120213049 + L1MC/D LINE L1 5352 5715 -2093 1430 187 85 36 chr9 22059115 22059539 -120211905 - LTR54 LTR ERV1 0 510 1 349 217 0 54 chr9 22060107 22060201 -120211243 + MER2 DNA MER2_type 1 87 -152 265 314 25 50 chr9 22062022 22062143 -120209301 - MIR3 SINE MIR -76 132 15 218 195 24 0 chr9 22062816 22062857 -120208587 + CT-rich Low_complexity Low_complexity 5 46 0 359 315 75 7 chr9 22062898 22063044 -120208400 - MIR3 SINE MIR -43 165 10 378 275 55 0 chr9 22063263 22063354 -120208090 - L2 LINE L2 -21 3251 3156 223 280 80 30 chr9 22063963 22064063 -120207381 - MIR3 SINE MIR -23 185 81 29 0 0 0 chr9 22064080 22064109 -120207335 + AT_rich Low_complexity Low_complexity 1 29 0 259 330 239 6 chr9 22065778 22065954 -120205490 - MIR SINE MIR -38 224 8 2305 104 0 0 chr9 22066329 22066638 -120204806 - AluSc SINE Alu 0 309 1 695 177 8 23 chr9 22066657 22066787 -120204657 + FLAM_A SINE Alu 1 128 -5 1201 167 21 13 chr9 22067592 22067826 -120203618 + MER46A DNA MER2_type 1 236 0 23 54 0 0 chr9 22068373 22068410 -120203034 + AT_rich Low_complexity Low_complexity 1 37 0 338 278 41 125 chr9 22069264 22069584 -120201860 + L2 LINE L2 2991 3283 -30 29 84 0 0 chr9 22069694 22069765 -120201679 + AT_rich Low_complexity Low_complexity 1 71 0 25 0 0 0 chr9 22069915 22069940 -120201504 + AT_rich Low_complexity Low_complexity 1 25 0 414 159 0 0 chr9 22071290 22071353 -120200091 - AluS SINE Alu -236 63 1 1264 203 117 34 chr9 22071376 22072031 -120199413 - L1MC4 LINE L1 -372 7670 6801 218 309 179 0 chr9 22072164 22072248 -120199196 + L2 LINE L2 3198 3296 -17 312 206 10 98 chr9 22072248 22072350 -120199094 - L2 LINE L2 0 3313 3221 21 0 0 0 chr9 22072896 22072917 -120198527 + AT_rich Low_complexity Low_complexity 1 21 0 182 205 244 13 chr9 22072964 22073042 -120198402 + MIR SINE MIR 154 249 -13 472 222 7 85 chr9 22073539 22073692 -120197752 + MER112 DNA MER1_type 1 141 -119 694 261 27 21 chr9 22073794 22073982 -120197462 - MER5A DNA MER1_type 0 189 1 620 273 146 34 chr9 22073990 22074961 -120196483 - L1ME LINE L1 -514 5648 4550 1877 146 10 0 chr9 22077751 22078039 -120193405 + AluJb SINE Alu 10 300 -12 838 207 56 61 chr9 22078042 22078255 -120193189 + AluJb SINE Alu 84 295 -17 720 258 30 5 chr9 22081092 22081290 -120190154 - L1ME LINE L1 -380 5741 5539 344 366 147 35 chr9 22081359 22082397 -120189047 - L2 LINE L2 -127 3145 2005 246 370 68 52 chr9 22082847 22083451 -120187993 - L2 LINE L2 -2 3270 2659 2375 97 62 3 chr9 22084178 22084530 -120186914 + THE1C LTR MaLR 1 373 -2 1278 179 20 77 chr9 22084717 22085014 -120186430 + L1MB1 LINE L1 5878 6157 -11 1866 149 7 7 chr9 22085264 22085560 -120185884 + AluJb SINE Alu 1 296 -16 243 218 0 0 chr9 22086218 22086273 -120185171 + (TG)n Simple_repeat Simple_repeat 1 55 0 752 189 37 20 chr9 22086821 22087032 -120184412 + L1M4 LINE L1 5313 5527 -634 562 274 91 11 chr9 22087405 22087580 -120183864 - MER5A DNA MER1_type 0 189 1 633 266 40 17 chr9 22087701 22087878 -120183566 - MIR SINE MIR -1 261 81 2293 93 0 22 chr9 22087913 22088224 -120183220 - AluSx SINE Alu -8 304 1 2404 81 3 3 chr9 22089224 22089534 -120181910 - AluSp SINE Alu -3 310 1 198 393 25 8 chr9 22090339 22090461 -120180983 + MIR3 SINE MIR 41 164 -44 1403 201 113 9 chr9 22090461 22090780 -120180664 + MLT1A1 LTR MaLR 2 353 -12 492 256 153 17 chr9 22091154 22091330 -120180114 - MIR SINE MIR -25 237 38 479 168 232 24 chr9 22091330 22091455 -120179989 - FRAM SINE Alu -18 158 8 381 200 0 0 chr9 22091726 22091791 -120179653 - MER2 DNA MER2_type -5 340 276 1376 152 123 29 chr9 22091795 22092071 -120179373 + AluJo SINE Alu 1 302 0 558 137 199 48 chr9 22092071 22092212 -120179232 + AluJo/FRAM SINE Alu 134 296 -16 1203 177 5 19 chr9 22092249 22092458 -120178986 - MER2 DNA MER2_type -139 206 1 301 250 57 93 chr9 22093041 22093181 -120178263 + MIR SINE MIR 115 249 -13 28 0 0 0 chr9 22094132 22094160 -120177284 + AT_rich Low_complexity Low_complexity 1 28 0 32 57 0 0 chr9 22094215 22094268 -120177176 + AT_rich Low_complexity Low_complexity 1 53 0 692 273 114 50 chr9 22095253 22095847 -120175597 + L1MEd LINE L1 595 1226 -4893 760 222 53 76 chr9 22095989 22096291 -120175153 - MER63 DNA MER1_type -1 1060 766 505 163 0 31 chr9 22097040 22097138 -120174306 + FRAM SINE Alu 74 168 -8 242 295 0 0 chr9 22098421 22098482 -120172962 + MARNA DNA Mariner 178 238 -348 774 251 18 6 chr9 22100051 22100222 -120171222 - MER5A DNA MER1_type 0 189 17 347 274 18 53 chr9 22101599 22101712 -120169732 - MIR SINE MIR -122 140 32 204 281 53 0 chr9 22101990 22102047 -120169397 + L2 LINE L2 3251 3310 -3 21 0 0 0 chr9 22102387 22102408 -120169036 + AT_rich Low_complexity Low_complexity 1 21 0 1703 144 31 24 chr9 22103504 22103795 -120167649 - AluJo SINE Alu -19 293 1 264 269 74 57 chr9 22103874 22103961 -120167483 - MER104 DNA Tc2 -1718 180 96 2392 74 0 13 chr9 22103961 22104273 -120167171 - AluY SINE Alu -3 308 1 264 269 74 57 chr9 22104273 22104360 -120167084 - MER104 DNA Tc2 -1802 96 3 213 389 71 0 chr9 22104943 22105069 -120166375 + L2 LINE L2 3137 3271 -1 2302 103 3 0 chr9 22105239 22105551 -120165893 - AluSq SINE Alu 0 313 1 219 69 0 0 chr9 22106008 22106037 -120165407 + (TG)n Simple_repeat Simple_repeat 1 29 0 225 312 85 7 chr9 22106618 22106759 -120164685 + L1M4 LINE L1 4457 4608 -1538 453 219 7 89 chr9 22208055 22208201 -120063243 - MER112 DNA MER1_type -126 134 1 21 0 0 0 chr9 22208823 22208844 -120062600 + AT_rich Low_complexity Low_complexity 1 21 0 312 206 10 98 chr9 22209390 22209492 -120061952 + L2 LINE L2 3221 3313 0 218 309 179 0 chr9 22209492 22209576 -120061868 - L2 LINE L2 -17 3296 3198 890 188 152 0 chr9 22209709 22209959 -120061485 + L1MC4 LINE L1 6801 7088 -954 2154 205 91 41 chr9 22209962 22210383 -120061061 + L1MC4 LINE L1 7241 7704 -338 2226 109 0 26 chr9 22210383 22210696 -120060748 + AluSc SINE Alu 1 305 -4 2154 205 91 41 chr9 22210696 22210888 -120060556 + L1MC4 LINE L1 7704 7885 -157 853 152 0 0 chr9 22211760 22211892 -120059552 - FLAM_A SINE Alu 0 133 2 223 325 25 0 chr9 22213265 22213345 -120058099 + MIR3 SINE MIR 118 199 -9 611 292 32 9 chr9 22213443 22213659 -120057785 - MIR SINE MIR -37 225 5 203 267 13 53 chr9 22213997 22214072 -120057372 - L2 LINE L2 -1115 2199 2128 323 347 25 0 chr9 22214816 22214937 -120056507 + MER91A DNA MER1_type 2 125 -71 1429 175 48 26 chr9 22214972 22215135 -120056309 - AluJo SINE Alu -22 290 117 249 33 0 0 chr9 22215135 22215165 -120056279 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 1429 175 48 26 chr9 22215165 22215269 -120056175 - AluJo SINE Alu -195 117 17 1973 151 3 6 chr9 22215623 22215934 -120055510 + AluSx SINE Alu 1 310 -2 957 259 98 15 chr9 22218650 22218986 -120052458 + L1MC/D LINE L1 5352 5715 -2093 354 169 0 0 chr9 22219640 22219705 -120051739 + GA-rich Low_complexity Low_complexity 2 66 0 256 336 39 10 chr9 22220357 22220461 -120050983 - MIR SINE MIR -91 171 65 34 55 0 0 chr9 22221015 22221070 -120050374 + AT_rich Low_complexity Low_complexity 1 55 0 2009 151 3 0 chr9 22221141 22221440 -120050004 + AluJb SINE Alu 1 300 -12 852 207 56 61 chr9 22221443 22221656 -120049788 + AluJb SINE Alu 84 295 -17 259 370 68 52 chr9 22225262 22225866 -120045578 + L2 LINE L2 2659 3270 -2 415 362 147 36 chr9 22226316 22227355 -120044089 + L2 LINE L2 2005 3145 -127 707 258 30 5 chr9 22227424 22227622 -120043822 + L1MB1 LINE L1 5539 5741 -380 2392 97 62 3 chr9 22228743 22229095 -120042349 + THE1C LTR MaLR 1 373 -2 1269 179 20 77 chr9 22229282 22229579 -120041865 + L1MB1 LINE L1 5878 6157 -11 1900 149 7 7 chr9 22229829 22230125 -120041319 + AluJb SINE Alu 1 296 -16 243 218 0 0 chr9 22230783 22230838 -120040606 + (TG)n Simple_repeat Simple_repeat 1 55 0 741 189 37 20 chr9 22231386 22231597 -120039847 + L1M4 LINE L1 5313 5527 -634 181 297 40 27 chr9 22231807 22231881 -120039563 + MIR SINE MIR 9 83 -179 565 274 91 11 chr9 22231970 22232145 -120039299 - MER5A DNA MER1_type 0 189 1 624 266 40 17 chr9 22232266 22232443 -120039001 - MIR SINE MIR -1 261 81 2323 93 0 22 chr9 22232478 22232789 -120038655 - AluSx SINE Alu -8 304 1 2433 81 3 3 chr9 22233789 22234099 -120037345 - AluSp SINE Alu -3 310 1 202 393 25 8 chr9 22234904 22235026 -120036418 + MIR3 SINE MIR 41 164 -44 1420 201 113 9 chr9 22235026 22235345 -120036099 + MLT1A1 LTR MaLR 2 353 -12 28 61 0 0 chr9 22238115 22238164 -120033280 + AT_rich Low_complexity Low_complexity 1 49 0 25 0 0 0 chr9 22240546 22240571 -120030873 + AT_rich Low_complexity Low_complexity 1 25 0 29 84 0 0 chr9 22240721 22240792 -120030652 + AT_rich Low_complexity Low_complexity 1 71 0 338 278 41 125 chr9 22240902 22241222 -120030222 - L2 LINE L2 -30 3283 2991 23 54 0 0 chr9 22242076 22242113 -120029331 + AT_rich Low_complexity Low_complexity 1 37 0 1201 167 21 13 chr9 22242660 22242894 -120028550 - MER46A DNA MER2_type 0 236 1 695 177 8 23 chr9 22243699 22243829 -120027615 - FLAM_A SINE Alu -5 128 1 2305 104 0 0 chr9 22243848 22244157 -120027287 + AluSc SINE Alu 1 309 0 259 330 239 6 chr9 22244532 22244708 -120026736 + MIR SINE MIR 8 224 -38 263 299 167 14 chr9 22245166 22245310 -120026134 + MIR3 SINE MIR 35 200 -8 202 281 53 0 chr9 22246881 22246938 -120024506 - L2 LINE L2 -3 3310 3251 346 274 18 53 chr9 22247216 22247329 -120024115 + MIR SINE MIR 32 140 -122 780 251 18 6 chr9 22248706 22248877 -120022567 + MER5A DNA MER1_type 17 189 0 237 295 0 0 chr9 22250446 22250507 -120020937 - MARNA DNA Mariner -348 238 178 508 163 0 31 chr9 22251790 22251888 -120019556 - FRAM SINE Alu -8 168 74 29 0 0 0 chr9 22253305 22253334 -120018110 + AT_rich Low_complexity Low_complexity 1 29 0 223 280 80 30 chr9 22253351 22253451 -120017993 + MIR3 SINE MIR 81 185 -23 378 275 55 0 chr9 22254060 22254151 -120017293 + L2 LINE L2 3156 3251 -21 359 315 75 7 chr9 22254370 22254516 -120016928 + MIR3 SINE MIR 10 165 -43 218 195 24 0 chr9 22254557 22254598 -120016846 + GA-rich Low_complexity Low_complexity 5 46 0 265 314 25 50 chr9 22255271 22255392 -120016052 + MIR3 SINE MIR 15 132 -76 349 217 0 54 chr9 22257213 22257307 -120014137 - MER2 DNA MER2_type -152 87 1 1430 187 85 36 chr9 22257875 22258299 -120013145 + LTR54 LTR ERV1 1 510 0 1732 144 31 24 chr9 22258975 22259266 -120012178 - AluJo SINE Alu -19 293 1 250 269 74 57 chr9 22259345 22259432 -120012012 - MER104 DNA Tc2 -1718 180 96 2427 74 0 13 chr9 22259432 22259744 -120011700 - AluY SINE Alu -3 308 1 250 269 74 57 chr9 22259744 22259831 -120011613 - MER104 DNA Tc2 -1802 96 3 214 389 71 0 chr9 22260414 22260540 -120010904 + L2 LINE L2 3137 3271 -1 2332 103 3 0 chr9 22260710 22261022 -120010422 - AluSq SINE Alu 0 313 1 219 69 0 0 chr9 22261479 22261508 -120009936 + (TG)n Simple_repeat Simple_repeat 1 29 0 240 282 74 23 chr9 22262390 22262606 -120008838 + L1ME LINE L1 5628 5854 -267 453 219 188 31 chr9 22264125 22264285 -120007159 + MER5A DNA MER1_type 4 188 -1 487 192 54 69 chr9 22265495 22265625 -120005819 + MLT2E LTR ERVL 1 128 -500 483 265 22 7 chr9 22265825 22265961 -120005483 + MLT2E LTR ERVL 488 625 -3 494 191 52 15 chr9 22266169 22266187 -120005257 - L1MA10 LINE L1 -13 6321 6304 2889 215 46 60 chr9 22266187 22266833 -120004611 - L1ME1 LINE L1 -27 6139 5486 2042 131 3 22 chr9 22266833 22267147 -120004297 + AluSx SINE Alu 5 312 0 2889 215 46 60 chr9 22267147 22267413 -120004031 - L1ME1 LINE L1 -680 5486 5253 1508 76 49 18 chr9 22267413 22267636 -120003808 - MER30 DNA MER1_type 0 230 1 2889 215 46 60 chr9 22267636 22267732 -120003712 - L1ME1 LINE L1 -913 5253 5157 1835 197 55 20 chr9 22267780 22268231 -120003213 - MLT1C LTR MaLR 0 467 1 584 163 0 0 chr9 22268278 22268370 -120003074 + L1MC1 LINE L1 6224 6315 -18 681 198 0 0 chr9 22268683 22268799 -120002645 + FLAM_A SINE Alu 11 126 -16 956 265 159 51 chr9 22268925 22269465 -120001979 - MLT1G1 LTR MaLR 0 555 1 183 129 0 0 chr9 22269895 22269926 -120001518 + (CA)n Simple_repeat Simple_repeat 2 32 0 290 355 32 79 chr9 22270156 22270345 -120001099 - L2 LINE L2 -11 3261 3082 2851 22 0 0 chr9 22270359 22270676 -120000768 + AluYb8 SINE Alu 1 317 -1 2144 125 0 0 chr9 22270688 22270983 -120000461 + AluSq SINE Alu 1 295 -18 6331 144 22 27 chr9 22271326 22271348 -120000096 + L1MA8 LINE L1 4208 4229 -2062 1919 157 58 0 chr9 22271348 22271673 -119999771 - MER2 DNA MER2_type 0 344 1 6331 144 22 27 chr9 22271673 22273240 -119998204 + L1MA8 LINE L1 4229 5784 -507 207 0 0 0 chr9 22273240 22273263 -119998181 + (TG)n Simple_repeat Simple_repeat 2 24 0 6331 144 22 27 chr9 22273263 22273766 -119997678 + L1MA8 LINE L1 5784 6288 -3 1824 116 116 0 chr9 22274953 22275230 -119996214 - AluSx SINE Alu -3 309 1 22 0 0 0 chr9 22278754 22278776 -119992668 + AT_rich Low_complexity Low_complexity 1 22 0 184 308 178 9 chr9 22278785 22278892 -119992552 + MIR SINE MIR 66 190 -72 360 261 139 57 chr9 22278894 22279134 -119992310 + L1MC4a LINE L1 5084 5342 -804 450 292 71 56 chr9 22279135 22279221 -119992223 + L1MC4a LINE L1 5355 5438 -683 2332 96 0 3 chr9 22279221 22279523 -119991921 + AluSg SINE Alu 2 302 -8 450 292 71 56 chr9 22279523 22279949 -119991495 + L1MC4a LINE L1 5438 5824 -297 32 43 0 0 chr9 22279978 22280024 -119991420 + AT_rich Low_complexity Low_complexity 1 46 0 509 146 104 0 chr9 22280463 22280559 -119990885 + FAM SINE Alu 38 143 -42 266 203 0 14 chr9 22280597 22280671 -119990773 + (CA)n Simple_repeat Simple_repeat 1 73 0 294 200 15 0 chr9 22280760 22280825 -119990619 - MER117 DNA MER1_type -50 147 82 657 217 174 0 chr9 22281266 22281427 -119990017 + MER5A DNA MER1_type 1 189 0 4557 167 61 6 chr9 22281905 22282756 -119988688 + MER54A LTR ERVL 1 898 -3 1247 190 58 10 chr9 22282836 22283131 -119988313 - HERVL74 LTR ERVL -544 5141 4833 510 215 104 7 chr9 22283159 22283303 -119988141 - HERVL74 LTR ERVL -939 4746 4589 481 207 43 17 chr9 22283299 22283415 -119988029 - HERVL74 LTR ERVL -1670 4015 3897 * 919 183 0 12 chr9 22283410 22283579 -119987865 - HERVL74 LTR ERVL -2034 3651 3485 * 981 218 13 39 chr9 22283577 22283829 -119987615 - HERVL74 LTR ERVL -2360 3325 2984 2355 85 0 3 chr9 22283829 22284135 -119987309 - AluSg SINE Alu -5 305 1 981 218 13 39 chr9 22284135 22284257 -119987187 - HERVL74 LTR ERVL -2701 2984 2860 2515 204 55 101 chr9 22286171 22286315 -119985129 + L1MC4a LINE L1 6611 6760 -1048 318 102 0 0 chr9 22286315 22286364 -119985080 + AluSc SINE Alu 250 298 -1 2515 204 55 101 chr9 22286364 22286444 -119985000 + L1MC4a LINE L1 6760 6842 -966 2083 135 3 7 chr9 22286444 22286748 -119984696 + AluSq SINE Alu 1 303 -10 2515 204 55 101 chr9 22286748 22286947 -119984497 + L1MC4a LINE L1 6842 7049 -759 2111 83 3 28 chr9 22286947 22287264 -119984180 + AluSx SINE Alu 1 310 0 2515 204 55 101 chr9 22287264 22287825 -119983619 + L1MC4a LINE L1 7049 7590 -218 898 191 43 47 chr9 22288033 22288289 -119983155 + L1MD3 LINE L1 7737 7991 -4 5969 74 1 1 chr9 22288438 22289258 -119982186 + L1PA13 LINE L1 5344 6163 0 339 341 35 18 chr9 22289543 22289713 -119981731 - L2 LINE L2 -211 3061 2889 23 0 0 0 chr9 22289903 22289926 -119981518 + AT_rich Low_complexity Low_complexity 1 23 0 2038 145 3 7 chr9 22289950 22290260 -119981184 - AluSx SINE Alu -3 309 1 309 51 0 0 chr9 22290336 22290375 -119981069 + (TG)n Simple_repeat Simple_repeat 2 40 0 28 29 0 0 chr9 22291174 22291209 -119980235 + AT_rich Low_complexity Low_complexity 1 35 0 262 200 133 0 chr9 22291584 22291674 -119979770 + L1MC1 LINE L1 5174 5275 -871 939 166 0 6 chr9 22291711 22291894 -119979550 + AluJb SINE Alu 144 312 0 4862 118 28 41 chr9 22291894 22292577 -119978867 + L1MC1 LINE L1 5267 6006 -327 1855 162 3 7 chr9 22292577 22292873 -119978571 + AluJb SINE Alu 1 295 -17 4862 118 28 41 chr9 22292873 22293178 -119978266 + L1MC1 LINE L1 6006 6313 -20 268 175 35 0 chr9 22293437 22293494 -119977950 - FLAM SINE Alu -21 112 54 24 32 0 0 chr9 22293503 22293534 -119977910 + AT_rich Low_complexity Low_complexity 1 31 0 242 314 12 17 chr9 22293906 22294012 -119977432 + GA-rich Low_complexity Low_complexity 4 174 0 180 0 0 0 chr9 22294016 22294036 -119977408 + (A)n Simple_repeat Simple_repeat 1 20 0 2123 123 10 0 chr9 22294104 22294404 -119977040 + AluSx SINE Alu 1 303 -9 1610 240 133 52 chr9 22295097 22295923 -119975521 - L1ME3A LINE L1 -24 6146 5254 191 319 167 22 chr9 22296367 22296505 -119974939 - MIR3 SINE MIR -46 162 5 803 258 103 78 chr9 22296878 22297285 -119974159 - Tigger8 DNA MER2_type -99 567 141 1619 193 103 44 chr9 22297285 22297762 -119973682 - MLT1D LTR MaLR 0 505 1 803 258 103 78 chr9 22297762 22297905 -119973539 - Tigger8 DNA MER2_type -525 141 3 526 280 34 23 chr9 22297947 22298122 -119973322 - MER5B DNA MER1_type 0 178 2 606 160 56 24 chr9 22298623 22298748 -119972696 - FLAM_C SINE Alu 0 133 5 1365 156 9 9 chr9 22299601 22299819 -119971625 - AluSx SINE Alu -93 219 2 2099 131 0 3 chr9 22300028 22300325 -119971119 - AluSx SINE Alu -16 296 1 22 0 0 0 chr9 22300647 22300669 -119970775 + AT_rich Low_complexity Low_complexity 1 22 0 23 68 0 0 chr9 22300759 22300803 -119970641 + AT_rich Low_complexity Low_complexity 1 44 0 331 244 124 62 chr9 22301144 22301418 -119970026 - L1ME4a LINE L1 -15 6106 5816 24 32 0 0 chr9 22302252 22302283 -119969161 + AT_rich Low_complexity Low_complexity 1 31 0 216 0 0 0 chr9 22302288 22302312 -119969132 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 2941 128 47 4 chr9 22302348 22302863 -119968581 + L1MA9 LINE L1 5545 6081 -231 439 175 78 0 chr9 22302865 22302968 -119968476 + L1MA9 LINE L1 6180 6290 -22 2135 109 7 13 chr9 22303496 22303833 -119967611 + AluY SINE Alu 1 311 0 2006 119 14 57 chr9 22303920 22304272 -119967172 + MER1B DNA MER1_type 1 337 0 306 0 0 0 chr9 22305063 22305097 -119966347 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 789 232 127 9 chr9 22307091 22307311 -119964133 - MIR SINE MIR -3 259 14 274 136 0 0 chr9 22307437 22307481 -119963963 - Charlie5 DNA MER1_type -304 2308 2265 21 36 0 0 chr9 22307547 22307575 -119963869 + AT_rich Low_complexity Low_complexity 1 28 0 11048 132 36 19 chr9 22307666 22308241 -119963203 - Tigger1 DNA MER2_type 0 2418 1854 1741 136 176 24 chr9 22308241 22308610 -119962834 - MSTA LTR MaLR -3 425 1 9238 124 23 59 chr9 22308610 22310248 -119961196 - MSTA-int LTR MaLR 0 1580 3 1617 175 73 17 chr9 22310250 22310605 -119960839 - THE1C LTR MaLR 0 375 1 11048 132 36 19 chr9 22310605 22311129 -119960315 - Tigger1 DNA MER2_type -564 1854 1341 2722 20 0 0 chr9 22311129 22311428 -119960016 - AluYb8 SINE Alu -7 311 13 11048 132 36 19 chr9 22311428 22312272 -119959172 - Tigger1 DNA MER2_type -1077 1341 436 470 175 21 10 chr9 22312281 22312378 -119959066 - Tigger1 DNA MER2_type -2134 284 187 776 266 0 0 chr9 22312378 22312555 -119958889 + FRAM SINE Alu 1 169 -7 545 115 9 26 chr9 22312555 22312668 -119958776 + (GGA)n Simple_repeat Simple_repeat 1 111 0 1000 190 0 0 chr9 22312668 22312847 -119958597 - Tigger1 DNA MER2_type -2232 186 8 1274 257 125 11 chr9 22312863 22313310 -119958134 + L1MB2 LINE L1 4758 5255 -891 3489 190 30 42 chr9 22313314 22313696 -119957748 + L1MB2 LINE L1 5330 5715 -456 1603 173 19 38 chr9 22313696 22314014 -119957430 + AluJo SINE Alu 1 312 0 3489 190 30 42 chr9 22314014 22314483 -119956961 + L1MB2 LINE L1 5715 6171 0 1299 208 32 49 chr9 22314627 22314935 -119956509 + AluJo SINE Alu 1 303 -9 23 0 0 0 chr9 22315173 22315196 -119956248 + AT_rich Low_complexity Low_complexity 1 23 0 1309 195 0 27 chr9 22315196 22315453 -119955991 + AluJo SINE Alu 50 299 -13 2073 112 6 56 chr9 22315476 22315833 -119955611 + LTR32 LTR ERVL 14 352 -119 880 162 13 0 chr9 22315832 22315986 -119955458 + LTR32 LTR ERVL 316 471 0 * 906 159 0 0 chr9 22316092 22316224 -119955220 - AluJb SINE Alu -180 132 1 2340 93 3 3 chr9 22316252 22316553 -119954891 + AluSq SINE Alu 1 301 -12 1541 224 0 3 chr9 22316568 22316862 -119954582 + AluJo SINE Alu 10 302 -10 864 146 12 12 chr9 22316865 22317029 -119954415 - Charlie5 DNA MER1_type -210 2402 2239 494 186 41 0 chr9 22317043 22317140 -119954304 - Charlie5 DNA MER1_type -2507 105 5 1662 168 24 3 chr9 22317714 22318005 -119953439 - AluJb SINE Alu -15 297 1 749 239 52 20 chr9 22318325 22318576 -119952868 - MIR SINE MIR 0 262 4 1352 176 134 8 chr9 22319328 22319589 -119951855 - AluJb SINE Alu -18 294 1 1814 169 3 29 chr9 22319640 22319954 -119951490 - AluJo SINE Alu -6 306 1 228 67 0 0 chr9 22321399 22321429 -119950015 + (TTG)n Simple_repeat Simple_repeat 1 30 0 221 250 156 0 chr9 22322291 22322355 -119949089 - L2 LINE L2 -37 3276 3203 21 36 0 0 chr9 22323866 22323894 -119947550 + AT_rich Low_complexity Low_complexity 1 28 0 669 153 76 17 chr9 22324217 22324335 -119947109 - FLAM_C SINE Alu -6 127 3 568 235 126 36 chr9 22324715 22324992 -119946452 + Charlie2 DNA MER1_type 1884 2185 -677 686 221 117 53 chr9 22325055 22325293 -119946151 + Charlie2 DNA MER1_type 2268 2489 -373 2044 117 0 0 chr9 22325293 22325597 -119945847 + AluSg SINE Alu 1 304 0 686 221 117 53 chr9 22325597 22325828 -119945616 + Charlie2 DNA MER1_type 2489 2768 -94 712 257 72 50 chr9 22326139 22326361 -119945083 + MIR SINE MIR 2 228 -34 835 130 22 58 chr9 22327193 22327331 -119944113 - AluSq/x SINE Alu -180 133 1 487 266 65 19 chr9 22327471 22327625 -119943819 + MER5A DNA MER1_type 29 189 0 21 0 0 0 chr9 22328041 22328062 -119943382 + AT_rich Low_complexity Low_complexity 1 21 0 292 309 24 71 chr9 22328757 22328925 -119942519 + MIR3 SINE MIR 16 175 -33 368 340 95 57 chr9 22329310 22329625 -119941819 - L2 LINE L2 -2 3270 2944 25 31 0 0 chr9 22329634 22329666 -119941778 + AT_rich Low_complexity Low_complexity 1 32 0 989 134 17 6 chr9 22329666 22329845 -119941599 - L1MA4A LINE L1 -1 6302 6122 22 56 0 0 chr9 22330921 22330957 -119940487 + AT_rich Low_complexity Low_complexity 1 36 0 984 111 0 0 chr9 22334801 22334981 -119936463 + (TA)n Simple_repeat Simple_repeat 1 180 0 917 123 0 0 chr9 22335047 22335169 -119936275 + AluSq/x SINE Alu 1 122 -191 340 374 72 0 chr9 22335432 22335571 -119935873 + L2 LINE L2 3122 3270 -2 216 0 0 0 chr9 22336195 22336219 -119935225 + (A)n Simple_repeat Simple_repeat 1 24 0 643 181 34 88 chr9 22337034 22337238 -119934206 + L1MC5 LINE L1 7725 7917 -44 2233 132 30 50 chr9 22338294 22338509 -119932935 + L1MA7 LINE L1 5116 5334 -957 1931 62 0 0 chr9 22338509 22338751 -119932693 - L1PA7 LINE L1 -6 6148 5907 2233 132 30 50 chr9 22338751 22339551 -119931893 + L1MA7 LINE L1 5334 6276 -15 23 24 0 24 chr9 22339551 22339574 -119931870 + AT_rich Low_complexity Low_complexity 1 24 -16 2039 139 0 0 chr9 22339574 22339862 -119931582 + AluSx SINE Alu 1 288 -24 23 24 0 24 chr9 22339862 22339879 -119931565 + AT_rich Low_complexity Low_complexity 24 40 0 1846 167 13 3 chr9 22340189 22340542 -119930902 - AluJb SINE Alu 0 356 1 368 218 81 40 chr9 22340846 22340970 -119930474 - MIR SINE MIR -43 219 91 728 230 43 59 chr9 22341094 22341281 -119930163 - MER5A DNA MER1_type -5 184 1 5855 137 25 21 chr9 22341451 22342430 -119929014 - Tigger1 DNA MER2_type 0 2418 1436 396 90 0 45 chr9 22342433 22342500 -119928944 + Tigger1 DNA MER2_type 2175 2238 -180 8927 118 56 10 chr9 22342559 22343922 -119927522 - Tigger1 DNA MER2_type -942 1476 44 683 225 0 0 chr9 22343922 22344042 -119927402 + FLAM_A SINE Alu 1 120 -13 8927 118 56 10 chr9 22344042 22344089 -119927355 - Tigger1 DNA MER2_type -2374 44 1 752 185 15 0 chr9 22345458 22345588 -119925856 + FLAM_C SINE Alu 1 132 -1 601 202 0 8 chr9 22345643 22345767 -119925677 + Charlie5 DNA MER1_type 1 123 -2489 937 186 54 18 chr9 22345772 22346077 -119925367 + Charlie5 DNA MER1_type 2245 2624 0 1230 183 29 77 chr9 22346142 22346454 -119924990 + AluJo SINE Alu 1 297 -15 33 0 0 0 chr9 22349041 22349074 -119922370 + AT_rich Low_complexity Low_complexity 1 33 0 5478 149 27 33 chr9 22349108 22349600 -119921844 - L1MC2 LINE L1 -1 6343 5850 2526 95 11 20 chr9 22349600 22349958 -119921486 - THE1A LTR MaLR 0 355 1 11229 92 23 3 chr9 22349958 22351506 -119919938 - THE1A-int LTR MaLR 0 1580 1 2543 91 3 22 chr9 22351506 22351868 -119919576 - THE1A LTR MaLR 0 355 1 5478 149 27 33 chr9 22351868 22352118 -119919326 - L1MC2 LINE L1 -492 5852 5602 932 194 52 157 chr9 22352118 22352520 -119918924 - MLT1A1 LTR MaLR -4 361 2 5478 149 27 33 chr9 22352520 22352782 -119918662 - L1MC2 LINE L1 -742 5602 5342 210 211 53 79 chr9 22352813 22352889 -119918555 + MER5A DNA MER1_type 14 87 -102 1619 191 13 20 chr9 22353098 22353396 -119918048 + AluJo SINE Alu 1 296 -16 231 319 22 95 chr9 22354361 22354534 -119916910 - MIR3 SINE MIR -47 161 33 3394 24 0 2 chr9 22354679 22355101 -119916343 - L1P LINE L1 -768 5378 4958 21 0 0 0 chr9 22356763 22356784 -119914660 + AT_rich Low_complexity Low_complexity 1 21 0 1065 216 4 4 chr9 22356858 22357099 -119914345 + L1MB3 LINE L1 5941 6181 -2 2090 211 94 55 chr9 22358844 22359442 -119912002 + MLT1E2 LTR MaLR 3 625 -1 465 188 80 27 chr9 22359476 22359588 -119911856 - MIR SINE MIR -68 194 77 3439 32 0 0 chr9 22360384 22360796 -119910648 - L1P LINE L1 -1558 4588 4177 6729 20 1 0 chr9 22360796 22361575 -119909869 + L1PA3 LINE L1 5372 6155 0 2158 92 0 0 chr9 22361691 22361964 -119909480 - AluSg SINE Alu -15 295 23 1571 148 38 98 chr9 22362307 22362706 -119908738 + THE1C LTR MaLR 1 375 0 1380 218 0 45 chr9 22362715 22363027 -119908417 - AluJo SINE Alu -14 298 1 212 351 33 19 chr9 22363251 22363363 -119908081 - MER5A DNA MER1_type -18 160 48 559 160 43 0 chr9 22363860 22363954 -119907490 + FLAM_A SINE Alu 1 98 -44 27 0 0 0 chr9 22363955 22363982 -119907462 + AT_rich Low_complexity Low_complexity 1 27 0 1870 130 77 64 chr9 22364253 22364630 -119906814 - MLT1B LTR MaLR -8 382 1 6103 99 34 18 chr9 22365258 22365919 -119905525 + MER41B-int LTR ERV1 5020 5702 -244 2214 114 3 3 chr9 22365919 22366218 -119905226 - AluSx SINE Alu -13 299 1 6103 99 34 18 chr9 22366218 22366468 -119904976 + MER41B-int LTR ERV1 5702 5946 0 3622 126 0 18 chr9 22366468 22367025 -119904419 + MER41B LTR ERV1 1 547 -88 1573 181 0 44 chr9 22367053 22367373 -119904071 + AluJb SINE Alu 2 307 -5 31 26 0 0 chr9 22367390 22367428 -119904016 + AT_rich Low_complexity Low_complexity 1 38 0 698 186 83 6 chr9 22367850 22368006 -119903438 + MER3 DNA MER1_type 40 207 -2 2032 117 3 24 chr9 22368385 22368683 -119902761 + AluSx SINE Alu 1 292 -20 1721 173 43 23 chr9 22368746 22369145 -119902299 - L1M4 LINE L1 -1469 4677 4271 224 276 41 41 chr9 22369145 22369243 -119902201 + MIR SINE MIR 141 238 -24 2300 96 0 3 chr9 22371002 22371304 -119900140 + AluSc SINE Alu 1 301 -8 247 273 0 30 chr9 22371605 22371671 -119899773 + MIR3 SINE MIR 12 75 -133 352 227 209 0 chr9 22371678 22371788 -119899656 + MER94 DNA DNA 2 134 0 209 207 57 0 chr9 22371803 22371863 -119899581 + MIR SINE MIR 87 150 -58 213 65 0 0 chr9 22372103 22372134 -119899310 + (A)n Simple_repeat Simple_repeat 1 31 0 349 324 90 0 chr9 22372275 22372386 -119899058 + L2 LINE L2 3150 3270 -2 374 56 0 19 chr9 22374745 22374799 -119896645 + (CA)n Simple_repeat Simple_repeat 2 54 0 26 0 0 0 chr9 22377363 22377389 -119894055 + AT_rich Low_complexity Low_complexity 1 26 0 22 70 0 0 chr9 22379218 22379261 -119892183 + AT_rich Low_complexity Low_complexity 1 43 0 259 259 71 62 chr9 22384182 22384294 -119887150 + MIR3 SINE MIR 75 187 -21 831 306 114 54 chr9 22384574 22385163 -119886281 + L1ME3 LINE L1 5273 5896 -266 663 145 26 0 chr9 22385174 22385291 -119886153 + L1MB7 LINE L1 6046 6165 -19 22 0 0 0 chr9 22385575 22385597 -119885847 + AT_rich Low_complexity Low_complexity 1 22 0 519 294 25 0 chr9 22385776 22385977 -119885467 + L1ME LINE L1 5540 5745 -376 2252 111 3 0 chr9 22386100 22386407 -119885037 + AluSq SINE Alu 1 308 -5 231 61 0 0 chr9 22386407 22386440 -119885004 + (GGGA)n Simple_repeat Simple_repeat 2 34 0 201 102 0 122 chr9 22386443 22386492 -119884952 + L2 LINE L2 3271 3313 0 1551 178 3 60 chr9 22387048 22387379 -119884065 + AluJb SINE Alu 1 312 0 355 195 138 98 chr9 22387551 22387618 -119883826 - MIR SINE MIR 0 262 199 1513 209 79 47 chr9 22387618 22388125 -119883319 + Charlie1b DNA MER1_type 1 523 0 355 195 138 98 chr9 22388125 22388231 -119883213 - MIR SINE MIR -63 199 82 309 246 72 94 chr9 22388708 22388985 -119882459 - L1ME LINE L1 -379 5787 5517 324 0 0 0 chr9 22392236 22392272 -119879172 + (CA)n Simple_repeat Simple_repeat 2 37 0 24 77 0 0 chr9 22392453 22392505 -119878939 + GC_rich Low_complexity Low_complexity 1 52 0 22 35 0 0 chr9 22392523 22392552 -119878892 + GC_rich Low_complexity Low_complexity 1 29 0 24 67 0 0 chr9 22392991 22393036 -119878408 + GC_rich Low_complexity Low_complexity 1 45 0 201 121 0 0 chr9 22393882 22393915 -119877529 + (TG)n Simple_repeat Simple_repeat 1 33 0 262 287 0 21 chr9 22393956 22393996 -119877448 + G-rich Low_complexity Low_complexity 1 40 -52 234 116 0 0 chr9 22393996 22394039 -119877405 + (TG)n Simple_repeat Simple_repeat 1 43 0 262 287 0 21 chr9 22394039 22394092 -119877352 + G-rich Low_complexity Low_complexity 40 92 0 195 42 0 0 chr9 22394389 22394413 -119877031 + (CTCG)n Simple_repeat Simple_repeat 3 26 0 189 0 0 0 chr9 22394438 22394459 -119876985 + (CAG)n Simple_repeat Simple_repeat 2 22 0 370 294 13 33 chr9 22395843 22395996 -119875448 + CT-rich Low_complexity Low_complexity 1 150 0 215 214 24 0 chr9 22397484 22397526 -119873918 + (CCA)n Simple_repeat Simple_repeat 1 43 0 22 0 0 0 chr9 22399074 22399096 -119872348 + AT_rich Low_complexity Low_complexity 1 22 0 2400 95 0 0 chr9 22399204 22399499 -119871945 + AluSc SINE Alu 1 295 -14 1724 229 77 105 chr9 22400586 22401597 -119869847 + L1MC4 LINE L1 6955 7937 -105 1642 181 3 29 chr9 22401632 22401942 -119869502 - AluJo SINE Alu -10 302 1 215 31 31 0 chr9 22402018 22402050 -119869394 + (TATATG)n Simple_repeat Simple_repeat 6 38 0 180 111 0 0 chr9 22402170 22402197 -119869247 + (TTTTC)n Simple_repeat Simple_repeat 2 28 0 718 150 0 0 chr9 22404059 22404172 -119867272 + FLAM_A SINE Alu 25 137 -5 377 287 51 46 chr9 22405633 22405870 -119865574 + MER102a DNA MER1_type 73 310 -20 969 197 31 9 chr9 22405992 22406220 -119865224 + MER58B DNA MER1_type 71 303 -38 2361 145 86 2 chr9 22406232 22406674 -119864770 - MER31A LTR ERV1 -6 479 1 859 171 75 4 chr9 22406717 22406945 -119864499 - Charlie5 DNA MER1_type -27 2585 2342 469 186 44 9 chr9 22406946 22407059 -119864385 + MER65B LTR ERV1 1 117 -414 247 220 74 44 chr9 22407354 22407444 -119864000 - MER33 DNA MER1_type -248 76 1 326 282 43 0 chr9 22408526 22408643 -119862801 - MIR SINE MIR -13 249 128 334 204 41 31 chr9 22408658 22408756 -119862688 - MER81 DNA DNA -15 99 1 189 256 0 0 chr9 22408758 22408801 -119862643 - MIR SINE MIR -203 59 17 225 0 0 0 chr9 22409740 22409765 -119861679 + (A)n Simple_repeat Simple_repeat 1 25 0 199 292 0 0 chr9 22410144 22410192 -119861252 - L2 LINE L2 -555 2759 2712 1619 180 16 47 chr9 22410386 22410739 -119860705 + AluJo SINE Alu 1 312 0 1262 152 14 24 chr9 22411068 22411278 -119860166 - AluJo SINE Alu -21 291 84 213 39 0 0 chr9 22411283 22411309 -119860135 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 1825 172 0 0 chr9 22411312 22411591 -119859853 - AluJb SINE Alu -33 279 1 311 261 65 80 chr9 22411704 22411842 -119859602 - L2 LINE L2 0 3313 3178 837 256 70 39 chr9 22411962 22412001 -119859443 + MLT1G1 LTR MaLR 1 37 -558 2269 103 0 13 chr9 22412001 22412313 -119859131 - AluSx SINE Alu -4 308 1 837 256 70 39 chr9 22412313 22412778 -119858666 + MLT1G1 LTR MaLR 37 593 -2 321 302 67 20 chr9 22412788 22413035 -119858409 + MLT1L LTR MaLR 100 350 -161 2514 251 20 24 chr9 22413035 22413799 -119857645 + L1ME2 LINE L1 5388 6148 -16 378 175 8 75 chr9 22414319 22414439 -119857005 + L1ME3 LINE L1 6050 6161 -1 278 342 130 9 chr9 22414480 22414711 -119856733 - L2 LINE L2 -751 2563 2305 181 400 11 0 chr9 22414772 22414867 -119856577 - L2 LINE L2 -1007 2307 2212 519 312 144 11 chr9 22414890 22415252 -119856192 + MLT1J LTR MaLR 72 481 -30 1611 166 98 26 chr9 22415569 22416092 -119855352 + MLT2A2 LTR ERVL 1 554 0 415 287 82 32 chr9 22416600 22416879 -119854565 - L1ME LINE L1 -478 5643 5351 342 301 68 44 chr9 22416894 22417143 -119854301 - L1ME LINE L1 -841 5305 5051 204 250 0 0 chr9 22417699 22417747 -119853697 + T-rich Low_complexity Low_complexity 1 48 0 532 280 24 16 chr9 22417753 22418003 -119853441 - L1ME LINE L1 -1494 4652 4401 325 270 11 101 chr9 22418268 22418356 -119853088 - MLT1K LTR MaLR -286 302 236 2143 137 3 13 chr9 22418356 22418670 -119852774 - AluSx SINE Alu -1 311 1 325 270 11 101 chr9 22418670 22418759 -119852685 - MLT1K LTR MaLR -352 236 141 419 365 38 22 chr9 22418822 22419222 -119852222 + L2 LINE L2 1862 2267 -1047 331 324 93 18 chr9 22419693 22420196 -119851248 + L1MC4a LINE L1 3997 4537 -1609 427 324 86 59 chr9 22420358 22420846 -119850598 + L1MC4a LINE L1 4799 5299 -847 2170 110 0 3 chr9 22420852 22421134 -119850310 + AluSq SINE Alu 1 281 -32 827 68 17 0 chr9 22421134 22421252 -119850192 + (GAAA)n Simple_repeat Simple_repeat 2 121 0 628 277 253 4 chr9 22421252 22421714 -119849730 + L1MC4a LINE L1 5367 5943 -1865 22 0 0 0 chr9 22421887 22421909 -119849535 + AT_rich Low_complexity Low_complexity 1 22 0 642 179 0 0 chr9 22422353 22422508 -119848936 - AluJ SINE Alu 0 331 177 757 259 16 5 chr9 22422527 22422716 -119848728 - AluJ SINE Alu -121 191 1 449 132 0 0 chr9 22422879 22422947 -119848497 + AluS SINE Alu 233 300 -10 266 258 0 15 chr9 22423007 22423073 -119848371 + MER91B DNA MER1_type 18 82 -108 611 210 11 16 chr9 22423090 22423224 -119848220 - MER5A DNA MER1_type -46 132 9 293 0 27 0 chr9 22423327 22423364 -119848080 + (TTTTA)n Simple_repeat Simple_repeat 3 40 0 710 185 0 34 chr9 22423370 22423489 -119847955 - FLAM_A SINE Alu -18 115 1 208 270 40 0 chr9 22423522 22423596 -119847848 + (CATATA)n Simple_repeat Simple_repeat 5 81 0 1295 209 64 32 chr9 22424118 22424401 -119847043 - AluJo SINE Alu -20 292 1 216 90 39 39 chr9 22424424 22424502 -119846942 + (TTATA)n Simple_repeat Simple_repeat 5 82 0 247 176 15 59 chr9 22424503 22424639 -119846805 + (TTA)n Simple_repeat Simple_repeat 2 131 0 11242 126 83 35 chr9 22425000 22425596 -119845848 - Tigger1 DNA MER2_type -1 2417 1851 2353 81 0 0 chr9 22425596 22425891 -119845553 - AluY SINE Alu -6 305 11 11242 126 83 35 chr9 22425891 22427413 -119844031 - Tigger1 DNA MER2_type -567 1851 198 23096 56 41 18 chr9 22427416 22430635 -119840809 - L1P LINE L1 -2851 3295 3 738 102 9 0 chr9 22430670 22430778 -119840666 + MLT1B LTR MaLR 3 111 -279 1611 149 35 4 chr9 22430782 22431043 -119840401 + AluSx SINE Alu 5 273 -39 1073 154 12 0 chr9 22431086 22431255 -119840189 + AluSg/x SINE Alu 128 298 -12 969 202 0 66 chr9 22431309 22431552 -119839892 + MLT1B LTR MaLR 161 387 -3 519 352 116 21 chr9 22431820 22432252 -119839192 - L2 LINE L2 -620 2694 2222 733 256 91 14 chr9 22432282 22432501 -119838943 - MIR SINE MIR -10 252 17 183 335 162 49 chr9 22432442 22432887 -119838557 - L2 LINE L2 -1005 2309 1815 * 216 196 0 20 chr9 22432915 22432966 -119838478 + GA-rich Low_complexity Low_complexity 2 51 0 789 233 207 16 chr9 22433767 22434144 -119837300 + L1MC4a LINE L1 5542 5990 -1818 249 108 0 0 chr9 22434246 22434283 -119837161 + (TG)n Simple_repeat Simple_repeat 2 38 0 306 280 37 9 chr9 22434300 22434407 -119837037 + LTR16A LTR ERVL 1 110 -340 23 0 0 0 chr9 22434553 22434576 -119836868 + AT_rich Low_complexity Low_complexity 1 23 0 348 24 0 0 chr9 22434652 22434693 -119836751 + (CA)n Simple_repeat Simple_repeat 2 42 0 26 50 0 0 chr9 22435384 22435424 -119836020 + AT_rich Low_complexity Low_complexity 1 40 0 847 131 0 29 chr9 22435786 22435956 -119835488 - FLAM_C SINE Alu 0 166 1 464 198 9 9 chr9 22435964 22436080 -119835364 + L1MA10 LINE L1 6212 6327 -7 1113 81 0 0 chr9 22436925 22437061 -119834383 + AluSq/x SINE Alu 1 136 -177 25 0 0 0 chr9 22437061 22437086 -119834358 + AT_rich Low_complexity Low_complexity 1 25 0 1263 102 0 0 chr9 22437086 22437252 -119834192 - AluSg/x SINE Alu -27 283 118 1741 170 17 3 chr9 22437466 22437766 -119833678 + AluJb SINE Alu 1 304 -8 278 240 143 97 chr9 22440089 22440285 -119831159 + LTR33 LTR ERVL 16 220 -301 408 160 123 19 chr9 22440322 22440428 -119831016 + MER96 DNA MER1_type? 15 131 -44 501 239 17 91 chr9 22440631 22440675 -119830769 - MER45A DNA AcHobo -1411 170 124 2182 114 3 3 chr9 22440675 22440972 -119830472 + AluSx SINE Alu 7 303 -9 501 239 17 91 chr9 22440972 22441103 -119830341 - MER45A DNA AcHobo -1457 124 8 457 224 50 153 chr9 22441398 22441510 -119829934 - MIR SINE MIR -38 224 149 1503 151 57 78 chr9 22441510 22441893 -119829551 - THE1C LTR MaLR 0 375 1 457 224 50 153 chr9 22441893 22442021 -119829423 - MIR SINE MIR -113 149 9 794 235 66 10 chr9 22443012 22443208 -119828236 - MER63A DNA MER1_type -3 207 1 2067 116 0 0 chr9 22443621 22443927 -119827517 - AluSx SINE Alu 0 306 1 25 0 0 0 chr9 22443927 22443952 -119827492 + AT_rich Low_complexity Low_complexity 1 25 0 1757 184 54 5 chr9 22444361 22444748 -119826696 - L1M4 LINE L1 -443 5741 5336 30 52 0 39 chr9 22444748 22444782 -119826662 + AT_rich Low_complexity Low_complexity 1 35 -39 1422 139 117 30 chr9 22444782 22445048 -119826396 - AluJb SINE Alu -23 289 1 30 52 0 39 chr9 22445048 22445090 -119826354 + AT_rich Low_complexity Low_complexity 35 74 0 733 196 39 39 chr9 22445229 22445433 -119826011 - MER63B DNA MER1_type -1 434 231 791 176 126 50 chr9 22445533 22445772 -119825672 - MER63B DNA MER1_type -179 257 1 228 329 14 0 chr9 22446034 22446104 -119825340 + L2 LINE L2 3200 3270 -2 243 241 0 0 chr9 22446421 22446479 -119824965 - MLT1J LTR MaLR -344 167 110 313 314 0 0 chr9 22446523 22446609 -119824835 + Cheshire DNA MER1_type 2 87 -2333 7339 172 34 1 chr9 22446618 22448042 -119823402 + Cheshire DNA MER1_type 399 1869 -551 4147 163 60 3 chr9 22448042 22449268 -119822176 + L1M2 LINE L1 4484 5779 -533 415 194 226 43 chr9 22449647 22449833 -119821611 + MLT1H LTR MaLR 334 535 -14 449 181 35 17 chr9 22450134 22450250 -119821194 + LTR33 LTR ERVL 402 519 -2 270 274 26 100 chr9 22450250 22450420 -119821024 - L2 LINE L2 -262 3051 2854 492 18 0 0 chr9 22450420 22450477 -119820967 + (TG)n Simple_repeat Simple_repeat 2 58 0 270 274 26 100 chr9 22450477 22450583 -119820861 - L2 LINE L2 -459 2854 2742 277 188 0 0 chr9 22450700 22450748 -119820696 - L2 LINE L2 -525 2789 2742 2202 95 11 0 chr9 22451750 22452033 -119819411 + AluSc SINE Alu 3 288 -21 22 0 0 0 chr9 22452033 22452055 -119819389 + AT_rich Low_complexity Low_complexity 1 22 0 238 188 0 21 chr9 22452090 22452138 -119819306 + MIR SINE MIR 16 62 -146 1453 169 3 110 chr9 22452156 22452493 -119818951 + AluJo SINE Alu 2 302 0 703 125 22 66 chr9 22452730 22452866 -119818578 - FLAM_C SINE Alu -3 130 1 199 273 23 0 chr9 22453021 22453065 -119818379 + L3b LINE CR1 1530 1574 -9 226 302 93 12 chr9 22453124 22453210 -119818234 + L2 LINE L2 3202 3294 -19 1611 192 77 0 chr9 22453403 22453741 -119817703 + MLT1A1 LTR MaLR 1 364 -1 709 288 45 10 chr9 22453815 22454043 -119817401 + MIR SINE MIR 16 245 -17 183 42 0 0 chr9 22454240 22454264 -119817180 + (ATTG)n Simple_repeat Simple_repeat 1 24 0 1576 101 60 38 chr9 22454268 22454535 -119816909 - AluSg SINE Alu -37 273 1 298 321 73 0 chr9 22454674 22454783 -119816661 + MER5B DNA MER1_type 15 131 -47 331 245 104 110 chr9 22455578 22455984 -119815460 - L1M2 LINE L1 -5896 953 449 181 258 76 15 chr9 22456757 22456823 -119814621 + MIR3 SINE MIR 112 181 -27 1908 96 8 0 chr9 22457631 22457881 -119813563 - AluSx SINE Alu -14 298 47 289 322 62 58 chr9 22459353 22459561 -119811883 - L2 LINE L2 -208 3064 2856 602 296 209 14 chr9 22459749 22460246 -119811198 - L2 LINE L2 -742 2572 1979 417 375 104 14 chr9 22460310 22460734 -119810710 - L2 LINE L2 -2085 1229 768 237 384 0 0 chr9 22461018 22461104 -119810340 - L2 LINE L2 -2943 371 286 246 286 79 21 chr9 22461465 22461605 -119809839 + MER117 DNA MER1_type 9 156 -41 2691 237 75 84 chr9 22461665 22462022 -119809422 + L2 LINE L2 1533 1892 -1422 1567 188 20 3 chr9 22462022 22462314 -119809130 - AluJo SINE Alu -15 297 1 2691 237 75 84 chr9 22462314 22462413 -119809031 + L2 LINE L2 1892 1990 -1324 2191 127 3 0 chr9 22462413 22462712 -119808732 - AluSx SINE Alu -12 300 1 2691 237 75 84 chr9 22462712 22462948 -119808496 + L2 LINE L2 1990 2227 -1087 2339 89 3 0 chr9 22462948 22463250 -119808194 - AluY SINE Alu -8 303 1 1924 97 90 0 chr9 22463252 22463520 -119807924 - AluSx SINE Alu -20 292 1 2691 237 75 84 chr9 22463520 22463927 -119807517 + L2 LINE L2 2228 2627 -687 616 262 70 49 chr9 22463927 22464413 -119807031 - MLT1H LTR MaLR 0 549 14 1389 277 92 14 chr9 22464413 22465060 -119806384 + L2 LINE L2 2614 3313 0 234 0 0 0 chr9 22465175 22465201 -119806243 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 1992 143 0 0 chr9 22465201 22465481 -119805963 - AluSx SINE Alu -32 280 1 24 32 0 0 chr9 22466086 22466117 -119805327 + AT_rich Low_complexity Low_complexity 1 31 0 498 254 30 71 chr9 22466280 22466686 -119804758 - L1MC5 LINE L1 -284 7677 7289 300 291 73 20 chr9 22466691 22466842 -119804602 - L1MC4a LINE L1 -431 7377 7219 1308 270 81 83 chr9 22467541 22467704 -119803740 + L2 LINE L2 2396 2558 -755 1233 103 46 73 chr9 22467704 22467935 -119803509 + L1MA9 LINE L1 6059 6284 -28 867 189 137 94 chr9 22467935 22467992 -119803452 + MLT1A1 LTR MaLR 1 54 -311 1779 161 7 4 chr9 22467992 22468299 -119803145 + AluJo SINE Alu 1 308 0 867 189 137 94 chr9 22468299 22468589 -119802855 + MLT1A1 LTR MaLR 54 365 0 1233 103 46 73 chr9 22468589 22468618 -119802826 + L1MA9 LINE L1 6284 6312 0 1308 270 81 83 chr9 22468618 22469096 -119802348 + L2 LINE L2 2558 3052 -261 222 37 0 0 chr9 22469836 22469863 -119801581 + (CA)n Simple_repeat Simple_repeat 2 28 0 1606 155 100 4 chr9 22469873 22470144 -119801300 - AluJo SINE Alu -15 297 1 2384 82 13 3 chr9 22470932 22471238 -119800206 + AluY SINE Alu 3 311 0 378 0 0 0 chr9 22471244 22471286 -119800158 + (TA)n Simple_repeat Simple_repeat 2 43 0 22 35 0 0 chr9 22471611 22471640 -119799804 + AT_rich Low_complexity Low_complexity 1 29 0 198 273 0 0 chr9 22472312 22472356 -119799088 - L2 LINE L2 -8 3305 3262 212 217 87 0 chr9 22472553 22472599 -119798845 - MIR3 SINE MIR -21 187 138 570 294 104 33 chr9 22472830 22473194 -119798250 + Tigger8 DNA MER2_type 131 520 -146 180 257 27 14 chr9 22473464 22473538 -119797906 - MIR SINE MIR -3 259 185 282 56 0 0 chr9 22473555 22473591 -119797853 + (TTA)n Simple_repeat Simple_repeat 1 36 0 1722 173 0 4 chr9 22473594 22473865 -119797579 - AluJo SINE Alu -33 279 10 660 270 70 42 chr9 22473927 22474168 -119797276 + MIR SINE MIR 13 260 -2 487 281 111 6 chr9 22474154 22474325 -119797119 + MIR SINE MIR 57 245 -17 * 496 156 0 22 chr9 22474407 22474497 -119796947 + AluSg/x SINE Alu 212 299 -10 189 231 15 62 chr9 22474877 22474942 -119796502 - L2 LINE L2 -529 2785 2724 288 106 0 0 chr9 22474958 22475005 -119796439 - L1P4 LINE L1 -424 5739 5693 186 215 51 114 chr9 22475239 22475318 -119796126 - L2 LINE L2 -12 3260 3187 * 217 264 242 11 chr9 22475317 22475408 -119796036 - MIR SINE MIR -62 146 35 975 192 91 0 chr9 22476446 22476654 -119794790 + MIR SINE MIR 30 256 -6 363 272 103 60 chr9 22476664 22476896 -119794548 - L1MC5 LINE L1 -37 7924 7683 1950 174 0 0 chr9 22477395 22477706 -119793738 - AluJo SINE Alu -1 311 1 308 264 92 80 chr9 22478022 22478185 -119793259 + MIR3 SINE MIR 10 174 -34 257 207 61 24 chr9 22478187 22478269 -119793175 - MLT1J1 LTR MaLR 0 446 362 340 302 157 0 chr9 22478451 22478623 -119792821 - MLT1J LTR MaLR -312 199 1 1744 155 132 5 chr9 22478871 22479253 -119792191 - Tigger2 DNA MER2_type 0 2718 1 1765 144 0 45 chr9 22479955 22480268 -119791176 + AluJo SINE Alu 1 299 -13 296 136 0 61 chr9 22480932 22480998 -119790446 + FAM SINE Alu 118 179 0 207 0 0 0 chr9 22481701 22481724 -119789720 + (T)n Simple_repeat Simple_repeat 1 23 0 2209 99 3 3 chr9 22481787 22482080 -119789364 + AluSq SINE Alu 3 295 -18 575 198 159 0 chr9 22482374 22482500 -119788944 + MER58A DNA MER1_type 3 148 0 306 241 23 11 chr9 22483469 22483556 -119787888 + MER103 DNA DNA 2 89 -77 632 256 83 6 chr9 22483568 22483748 -119787696 + L2 LINE L2 2238 2431 -883 976 67 8 0 chr9 22483848 22483968 -119787476 + AluSq/x SINE Alu 1 121 -192 210 91 0 0 chr9 22484409 22484442 -119787002 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 707 185 0 0 chr9 22484445 22484564 -119786880 - FLAM_C SINE Alu -24 119 1 307 311 112 12 chr9 22485070 22485231 -119786213 - MER5B DNA MER1_type -1 177 1 487 196 76 0 chr9 22485266 22485358 -119786086 - MER5A DNA MER1_type -88 101 3 2317 96 3 0 chr9 22485542 22485833 -119785611 - AluSp SINE Alu -21 292 1 206 235 82 94 chr9 22486391 22486476 -119784968 - MIR SINE MIR -153 109 26 3108 40 0 0 chr9 22486972 22487346 -119784098 - L1PA3 LINE L1 -3 6152 5779 7143 28 60 0 chr9 22487346 22488272 -119783172 + L1P LINE L1 4115 5096 -1050 326 352 45 25 chr9 22488605 22488804 -119782640 + L2 LINE L2 2550 2752 -562 269 355 121 45 chr9 22489001 22489421 -119782023 + L2 LINE L2 2805 3256 -16 351 118 0 0 chr9 22489435 22489486 -119781958 + AluSg/x SINE Alu 216 266 -36 670 189 8 16 chr9 22489651 22489773 -119781671 - FLAM_A SINE Alu -11 122 2 379 286 83 12 chr9 22489877 22490018 -119781426 - MIR3 SINE MIR -10 198 42 2260 113 0 0 chr9 22490018 22490320 -119781124 - AluY SINE Alu -9 302 1 379 286 83 12 chr9 22490320 22490346 -119781098 - MIR3 SINE MIR -166 42 19 362 319 25 8 chr9 22491011 22491130 -119780314 + L2 LINE L2 3193 3313 0 25 0 0 0 chr9 22491248 22491273 -119780171 + AT_rich Low_complexity Low_complexity 1 25 0 1076 209 17 0 chr9 22491280 22491515 -119779929 - L1PA16 LINE L1 -15 6151 5913 190 260 106 39 chr9 22491801 22491905 -119779539 - L2 LINE L2 -23 3290 3180 1033 163 0 0 chr9 22491929 22492076 -119779368 + FAM SINE Alu 20 166 -19 281 287 122 63 chr9 22492140 22492377 -119779067 - L2 LINE L2 -218 3054 2804 509 279 54 0 chr9 22492545 22492692 -119778752 + MIR SINE MIR 87 241 -21 2266 86 0 10 chr9 22492865 22493155 -119778289 - AluSc SINE Alu -22 287 1 401 333 60 12 chr9 22494937 22495105 -119776339 - L3 LINE CR1 -2 1575 1400 226 188 0 31 chr9 22495209 22495273 -119776171 + CT-rich Low_complexity Low_complexity 3 64 0 14907 31 0 0 chr9 22495428 22497970 -119773474 - L1PA3 LINE L1 -3 6152 3607 24 0 0 0 chr9 22498045 22498069 -119773375 + AT_rich Low_complexity Low_complexity 1 24 0 1182 198 24 0 chr9 22498897 22499109 -119772335 + MER20 DNA MER1_type 2 218 -1 210 91 0 0 chr9 22500069 22500102 -119771342 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 707 185 0 0 chr9 22500105 22500224 -119771220 - FLAM_C SINE Alu -24 119 1 307 311 112 12 chr9 22500730 22500891 -119770553 - MER5B DNA MER1_type -1 177 1 487 196 76 0 chr9 22500926 22501018 -119770426 - MER5A DNA MER1_type -88 101 3 2317 96 3 0 chr9 22501202 22501493 -119769951 - AluSp SINE Alu -21 292 1 206 235 82 94 chr9 22502051 22502136 -119769308 - MIR SINE MIR -153 109 26 3108 40 0 0 chr9 22502632 22503006 -119768438 - L1PA3 LINE L1 -3 6152 5779 7143 28 60 0 chr9 22503006 22503932 -119767512 + L1P LINE L1 4115 5096 -1050 326 352 45 25 chr9 22504265 22504464 -119766980 + L2 LINE L2 2550 2752 -562 269 355 121 45 chr9 22504661 22505081 -119766363 + L2 LINE L2 2805 3256 -16 351 118 0 0 chr9 22505095 22505146 -119766298 + AluSg/x SINE Alu 214 264 -36 691 180 8 16 chr9 22505311 22505433 -119766011 - FLAM_A SINE Alu -11 122 2 435 259 77 14 chr9 22505532 22505675 -119765769 - MIR3 SINE MIR -5 203 52 2285 109 0 0 chr9 22505682 22505984 -119765460 - AluY SINE Alu -9 302 1 362 319 25 8 chr9 22506675 22506794 -119764650 + L2 LINE L2 3193 3313 0 25 0 0 0 chr9 22506912 22506937 -119764507 + AT_rich Low_complexity Low_complexity 1 25 0 1076 209 17 0 chr9 22506944 22507179 -119764265 - L1PA16 LINE L1 -15 6151 5913 190 260 106 39 chr9 22507465 22507569 -119763875 - L2 LINE L2 -23 3290 3180 1033 163 0 0 chr9 22507593 22507740 -119763704 + FAM SINE Alu 20 166 -19 281 287 122 63 chr9 22507804 22508041 -119763403 - L2 LINE L2 -218 3054 2804 509 279 54 0 chr9 22508209 22508356 -119763088 + MIR SINE MIR 87 241 -21 2266 86 0 10 chr9 22508529 22508819 -119762625 - AluSc SINE Alu -22 287 1 401 333 60 12 chr9 22510601 22510769 -119760675 - L3 LINE CR1 -2 1575 1400 247 172 0 31 chr9 22510873 22510937 -119760507 + CT-rich Low_complexity Low_complexity 3 64 0 8553 27 0 1 chr9 22511092 22512882 -119758562 - L1PA2 LINE L1 -3 6152 4363 25 0 0 0 chr9 22513100 22513125 -119758319 + AT_rich Low_complexity Low_complexity 1 25 0 203 269 74 56 chr9 22513665 22513773 -119757671 - MER5B DNA MER1_type -62 116 7 2598 145 34 0 chr9 22514516 22514930 -119756514 - MSTA LTR MaLR 0 428 1 272 349 81 55 chr9 22515223 22515495 -119755949 - L2 LINE L2 -133 3139 2861 982 226 103 38 chr9 22515699 22515741 -119755703 - MLT1A2 LTR MaLR -32 342 304 2006 142 16 3 chr9 22515741 22516044 -119755400 + AluSx SINE Alu 1 307 -5 982 226 103 38 chr9 22516044 22516320 -119755124 - MLT1A2 LTR MaLR -70 304 3 437 325 183 23 chr9 22516331 22517024 -119754420 - L2 LINE L2 -737 2577 1774 330 214 44 19 chr9 22517129 22517288 -119754156 + (TA)n Simple_repeat Simple_repeat 1 163 0 227 263 211 0 chr9 22517475 22517570 -119753874 - L2 LINE L2 -9 3304 3190 447 253 34 34 chr9 22517572 22517718 -119753726 - MER5A DNA MER1_type -1 188 43 316 225 83 58 chr9 22517766 22517886 -119753558 - L1ME3 LINE L1 -79 6083 5961 1196 198 61 68 chr9 22518079 22518138 -119753306 - L1MC5 LINE L1 -524 7437 7379 2145 147 3 15 chr9 22518138 22518479 -119752965 + MER1B DNA MER1_type 1 337 0 1196 198 61 68 chr9 22518479 22518848 -119752596 - L1MC5 LINE L1 -582 7379 7012 312 205 15 91 chr9 22518849 22518989 -119752455 - L1MC5 LINE L1 -980 7062 6878 237 327 64 73 chr9 22519895 22520005 -119751439 + L2 LINE L2 3141 3249 -23 237 114 57 23 chr9 22520115 22520203 -119751241 + T-rich Low_complexity Low_complexity 2 92 0 180 0 0 0 chr9 22521569 22521589 -119749855 + (T)n Simple_repeat Simple_repeat 1 20 0 21 0 0 0 chr9 22521737 22521758 -119749686 + AT_rich Low_complexity Low_complexity 1 21 0 2444 31 41 0 chr9 22522085 22522378 -119749066 + AluY SINE Alu 1 305 -6 249 226 0 0 chr9 22522511 22522573 -119748871 - AluJ/monomer SINE Alu -4 298 237 791 147 21 7 chr9 22522795 22522938 -119748506 + AluSg/x SINE Alu 156 300 -12 565 193 22 67 chr9 22522938 22522988 -119748456 + L2 LINE L2 2433 2484 -830 2284 125 7 0 chr9 22522988 22523293 -119748151 - AluSx SINE Alu -5 307 1 565 193 22 67 chr9 22523293 22523377 -119748067 + L2 LINE L2 2484 2561 -753 1444 284 56 40 chr9 22523414 22523980 -119747464 + L2 LINE L2 2745 3313 0 1238 110 59 59 chr9 22524342 22524578 -119746866 - MER46A DNA MER2_type 0 236 1 24 0 0 0 chr9 22524683 22524707 -119746737 + AT_rich Low_complexity Low_complexity 1 24 0 624 74 0 0 chr9 22524867 22524962 -119746482 + (TTCC)n Simple_repeat Simple_repeat 4 98 0 29 0 0 0 chr9 22525738 22525767 -119745677 + AT_rich Low_complexity Low_complexity 1 29 0 22 70 0 0 chr9 22526048 22526091 -119745353 + AT_rich Low_complexity Low_complexity 1 43 0 27 0 0 0 chr9 22526594 22526621 -119744823 + AT_rich Low_complexity Low_complexity 1 27 0 411 225 209 0 chr9 22526956 22527085 -119744359 + HsTC2 DNA Tc2 1 156 -1742 577 222 18 18 chr9 22527090 22527257 -119744187 + HsTC2 DNA Tc2 1729 1895 -3 380 304 61 0 chr9 22527796 22527944 -119743500 + MIR SINE MIR 94 250 -12 21 71 0 0 chr9 22528285 22528327 -119743117 + AT_rich Low_complexity Low_complexity 1 42 0 2246 112 0 3 chr9 22529340 22529643 -119741801 - AluSx SINE Alu -10 302 1 216 0 0 0 chr9 22530039 22530063 -119741381 + (T)n Simple_repeat Simple_repeat 1 24 0 246 317 134 24 chr9 22531629 22531681 -119739763 - L3b LINE CR1 -265 1318 1273 2188 131 0 0 chr9 22531681 22531979 -119739465 + AluSx SINE Alu 2 299 -13 246 317 134 24 chr9 22531979 22532090 -119739354 - L3b LINE CR1 -310 1273 1137 362 173 13 0 chr9 22532245 22532320 -119739124 + CT-rich Low_complexity Low_complexity 3 78 0 599 224 112 20 chr9 22532320 22532472 -119738972 - FRAM SINE Alu 0 166 1 203 352 57 0 chr9 22532768 22532856 -119738588 + L2 LINE L2 3179 3271 -1 2143 105 0 20 chr9 22533476 22533770 -119737674 + AluSx SINE Alu 6 293 -19 459 227 104 40 chr9 22533919 22534034 -119737410 - L1MC4a LINE L1 -1832 5976 5870 2676 146 14 9 chr9 22534034 22534458 -119736986 - MSTB LTR MaLR 0 426 1 459 227 104 40 chr9 22534458 22534608 -119736836 - L1MC4a LINE L1 -1938 5870 5681 1857 138 3 14 chr9 22535152 22535435 -119736009 + AluSx SINE Alu 1 280 -32 210 37 0 0 chr9 22535435 22535462 -119735982 + (CAAT)n Simple_repeat Simple_repeat 4 30 0 25 0 0 0 chr9 22538398 22538423 -119733021 + AT_rich Low_complexity Low_complexity 1 25 0 2242 129 14 3 chr9 22538465 22538821 -119732623 - MER46B DNA MER2_type -1 235 1 1804 214 23 51 chr9 22539363 22539834 -119731610 - MLT1C LTR MaLR -1 466 9 26 0 0 0 chr9 22540196 22540222 -119731222 + AT_rich Low_complexity Low_complexity 1 26 0 228 330 0 10 chr9 22540292 22540392 -119731052 - MIR SINE MIR -6 256 158 1378 156 48 73 chr9 22540401 22540773 -119730671 - L1MC5 LINE L1 -676 7285 6923 2148 92 3 11 chr9 22541219 22541503 -119729941 + AluSx SINE Alu 1 282 -30 396 0 0 0 chr9 22541506 22541550 -119729894 + (CAA)n Simple_repeat Simple_repeat 2 45 0 2151 107 3 0 chr9 22542029 22542318 -119729126 - AluSp SINE Alu -23 290 1 1108 67 0 27 chr9 22542353 22542503 -119728941 - L1PA10 LINE L1 -11 6157 6012 881 315 114 30 chr9 22542530 22543411 -119728033 - L2 LINE L2 -49 3223 2281 2683 59 0 0 chr9 22543757 22544096 -119727348 - L1PA3 LINE L1 0 6155 5817 1846 167 3 31 chr9 22544121 22544438 -119727006 + AluJo SINE Alu 1 308 -4 377 291 103 18 chr9 22544857 22545046 -119726398 - L1MC4a LINE L1 -460 5661 5650 1721 145 37 4 chr9 22545046 22545315 -119726129 - AluJb SINE Alu -13 299 22 377 291 103 18 chr9 22545315 22545499 -119725945 - L1MC4a LINE L1 -471 5650 5483 212 83 0 28 chr9 22545874 22545910 -119725534 + (TCCCC)n Simple_repeat Simple_repeat 3 37 0 1465 203 13 29 chr9 22545912 22546222 -119725222 - AluJo SINE Alu -7 305 1 508 150 71 9 chr9 22546249 22546362 -119725082 - L1MB7 LINE L1 -5 6179 6060 24 53 0 0 chr9 22546574 22546612 -119724832 + AT_rich Low_complexity Low_complexity 1 38 0 266 348 30 22 chr9 22547130 22547265 -119724179 - MIR SINE MIR -74 188 53 35 24 0 0 chr9 22547316 22547358 -119724086 + AT_rich Low_complexity Low_complexity 1 42 0 1435 147 43 52 chr9 22549130 22549457 -119721987 - MER33 DNA MER1_type 0 324 1 265 208 111 0 chr9 22549617 22549689 -119721755 + MIR SINE MIR 173 252 -10 2202 118 3 0 chr9 22549720 22550017 -119721427 + AluSq SINE Alu 1 298 -15 21 71 0 0 chr9 22550755 22550797 -119720647 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr9 22551968 22551989 -119719455 + AT_rich Low_complexity Low_complexity 1 21 0 198 0 0 0 chr9 22552075 22552097 -119719347 + (T)n Simple_repeat Simple_repeat 1 22 0 847 183 70 5 chr9 22552350 22552536 -119718908 - L1MB8 LINE L1 -5 6173 5976 311 271 78 50 chr9 22552548 22552707 -119718737 + MER5B DNA MER1_type 1 173 -16 367 216 223 22 chr9 22552731 22552870 -119718574 - MER5A DNA MER1_type -14 175 9 286 306 194 8 chr9 22552880 22553014 -119718430 + MER5A DNA MER1_type 28 186 -3 505 284 26 37 chr9 22554011 22554201 -119717243 - MER5A DNA MER1_type -1 188 1 239 349 138 0 chr9 22554631 22554740 -119716704 - MER5A DNA MER1_type -65 124 1 553 230 91 30 chr9 22554959 22555124 -119716320 - MER5B DNA MER1_type -3 175 1 694 261 72 0 chr9 22555124 22555319 -119716125 - Charlie8 DNA MER1_type -2208 209 1 1732 134 73 0 chr9 22555512 22555787 -119715657 - AluJb SINE Alu -17 295 1 291 264 186 28 chr9 22556623 22556853 -119714591 - L2 LINE L2 -302 3011 2743 1534 244 258 18 chr9 22556866 22557609 -119713835 - L1MD3 LINE L1 -8 8034 7124 1193 163 93 4 chr9 22557828 22558180 -119713264 - L1MB7 LINE L1 -1 6179 5766 25 31 0 0 chr9 22558591 22558623 -119712821 + AT_rich Low_complexity Low_complexity 1 32 0 375 354 32 32 chr9 22561368 22561526 -119709918 - MIR3 SINE MIR -37 171 14 906 36 0 0 chr9 22561557 22561667 -119709777 - L1PA3 LINE L1 0 6155 6046 1522 103 115 24 chr9 22561768 22562020 -119709424 - AluSg SINE Alu -35 275 1 26 30 0 0 chr9 22562378 22562411 -119709033 + AT_rich Low_complexity Low_complexity 1 33 0 2221 103 0 10 chr9 22562965 22563265 -119708179 + AluSq SINE Alu 1 297 -16 870 200 170 0 chr9 22563564 22563794 -119707650 - L1MB7 LINE L1 0 6184 5916 29 60 0 0 chr9 22564108 22564158 -119707286 + AT_rich Low_complexity Low_complexity 1 50 0 489 114 0 0 chr9 22567084 22567154 -119704290 - AluS SINE Alu -15 294 225 32 26 0 0 chr9 22567198 22567237 -119704207 + AT_rich Low_complexity Low_complexity 1 39 0 546 248 22 93 chr9 22567342 22567620 -119703824 - LTR41 LTR ERVL -1 772 515 758 200 5 46 chr9 22567765 22567960 -119703484 - LTR41 LTR ERVL -586 187 1 189 321 185 0 chr9 22568334 22568415 -119703029 - MIR SINE MIR -10 252 157 224 266 83 18 chr9 22568445 22568554 -119702890 + MIR SINE MIR 70 185 -77 * 554 250 55 30 chr9 22568541 22568705 -119702739 - MIR SINE MIR -14 248 81 3575 171 22 38 chr9 22568719 22569502 -119701942 - L1MB8 LINE L1 0 6178 5409 330 365 48 0 chr9 22569502 22569628 -119701816 - MIR SINE MIR -104 158 27 225 65 0 0 chr9 22570581 22570612 -119700832 + (CAAA)n Simple_repeat Simple_repeat 3 33 0 183 295 209 9 chr9 22571081 22571186 -119700258 - MIR SINE MIR -37 225 100 23 0 0 0 chr9 22571339 22571362 -119700082 + AT_rich Low_complexity Low_complexity 1 23 0 311 278 111 35 chr9 22571492 22571690 -119699754 - L1MC4a LINE L1 -1786 6022 5810 2702 165 39 11 chr9 22571721 22572259 -119699185 + L1MB7 LINE L1 5631 6183 -1 208 269 0 0 chr9 22573487 22573539 -119697905 + T-rich Low_complexity Low_complexity 1 52 0 1968 138 47 0 chr9 22574256 22574552 -119696892 + AluSx SINE Alu 3 312 0 363 23 0 0 chr9 22574983 22575027 -119696417 + (CA)n Simple_repeat Simple_repeat 1 44 0 1041 95 0 50 chr9 22575104 22575283 -119696161 - L1MA5 LINE L1 -1 6299 6130 470 308 103 35 chr9 22578157 22578585 -119692859 + HAL1 LINE L1 1131 1587 -920 21 82 0 0 chr9 22578770 22578819 -119692625 + AT_rich Low_complexity Low_complexity 1 49 0 2497 62 3 0 chr9 22579267 22579571 -119691873 + AluY SINE Alu 1 305 -6 207 0 0 0 chr9 22579583 22579606 -119691838 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 35963 47 5 7 chr9 22579607 22584940 -119686504 - L1PA4 LINE L1 -11 6144 823 605 116 0 0 chr9 22585156 22585242 -119686202 - AluS SINE Alu -222 90 5 22 0 0 0 chr9 22586788 22586810 -119684634 + AT_rich Low_complexity Low_complexity 1 22 0 292 310 93 8 chr9 22590784 22590913 -119680531 + MIR SINE MIR 123 262 0 1485 222 25 1 chr9 22591151 22591482 -119679962 - MER33 DNA MER1_type -1 323 1 1912 151 13 3 chr9 22591532 22591831 -119679613 + AluSx SINE Alu 1 302 -10 249 290 73 19 chr9 22592780 22592978 -119678466 - L1MC/D LINE L1 -237 5884 5716 910 182 0 6 chr9 22593021 22593191 -119678253 + MER3 DNA MER1_type 1 122 -87 365 211 193 0 chr9 22593183 22593297 -119678147 - MER3 DNA MER1_type -87 122 34 * 1255 239 4 0 chr9 22593739 22593986 -119677458 - MER68 LTR ERV1 -4 558 311 297 338 146 26 chr9 22596455 22596606 -119674838 + MIR3 SINE MIR 17 185 -23 3517 166 47 12 chr9 22596625 22597347 -119674097 - L1MB1 LINE L1 0 6168 5422 2078 218 133 53 chr9 22597347 22598108 -119673336 - L1M4 LINE L1 -3348 3034 2335 2117 143 0 6 chr9 22598108 22598422 -119673022 - AluSx SINE Alu 0 312 1 2078 218 133 53 chr9 22598422 22598889 -119672555 - L1M4 LINE L1 -4047 2335 1667 2024 122 9 34 chr9 22598889 22599209 -119672235 - AluSx SINE Alu 0 312 1 2078 218 133 53 chr9 22599209 22599387 -119672057 - L1M4 LINE L1 -4715 1667 1505 22 0 0 0 chr9 22599636 22599658 -119671786 + AT_rich Low_complexity Low_complexity 1 22 0 1176 209 66 80 chr9 22600483 22600833 -119670611 - MER2 DNA MER2_type 0 345 1 1714 157 116 61 chr9 22600964 22601371 -119670073 - L1MB8 LINE L1 -15 6163 5735 * 3378 198 35 16 chr9 22601354 22602787 -119668657 - L1MB7 LINE L1 -232 5952 4498 1679 204 0 0 chr9 22602983 22603277 -119668167 - AluJo SINE Alu -17 295 2 23 0 0 0 chr9 22603529 22603552 -119667892 + AT_rich Low_complexity Low_complexity 1 23 0 25 51 0 0 chr9 22603815 22603854 -119667590 + AT_rich Low_complexity Low_complexity 1 39 0 23 33 0 0 chr9 22604872 22604902 -119666542 + AT_rich Low_complexity Low_complexity 1 30 0 243 0 0 0 chr9 22605761 22605788 -119665656 + (A)n Simple_repeat Simple_repeat 1 27 0 180 206 0 0 chr9 22606229 22606263 -119665181 + L2 LINE L2 3216 3249 -23 281 281 173 22 chr9 22607618 22607757 -119663687 - MIR SINE MIR -16 246 87 201 239 119 15 chr9 22608417 22608484 -119662960 + MIR SINE MIR 81 154 -108 348 24 0 0 chr9 22608908 22608949 -119662495 + (TG)n Simple_repeat Simple_repeat 2 42 0 1964 185 40 32 chr9 22609859 22610403 -119661041 + MLT2A2 LTR ERVL 1 554 0 2073 164 25 30 chr9 22610784 22611223 -119660221 - L1MB8 LINE L1 0 6178 5742 1605 238 34 49 chr9 22611223 22611258 -119660186 + L1MA9 LINE L1 5749 5783 -529 246 105 0 0 chr9 22611258 22611296 -119660148 + (TG)n Simple_repeat Simple_repeat 2 39 0 1605 238 34 49 chr9 22611296 22611655 -119659789 + L1MA9 LINE L1 5783 6135 -177 1619 163 73 3 chr9 22611655 22611944 -119659500 + AluJo SINE Alu 1 309 -3 1605 238 34 49 chr9 22611944 22612082 -119659362 + L1MA9 LINE L1 6135 6274 -38 1560 163 7 0 chr9 22612086 22612363 -119659081 - L1MB8 LINE L1 -415 5769 5491 5643 93 5 10 chr9 22612393 22613188 -119658256 - L1PA10 LINE L1 -4 6164 5374 869 179 22 22 chr9 22613162 22613346 -119658098 - L1MB8 LINE L1 -672 5502 5319 * 375 262 129 74 chr9 22613638 22613840 -119657604 - MIR SINE MIR -13 249 37 1472 201 10 10 chr9 22614437 22614726 -119656718 - AluJo SINE Alu -7 305 17 252 284 102 11 chr9 22615192 22615280 -119656164 - L2 LINE L2 -38 3234 3139 2455 204 62 20 chr9 22615465 22616073 -119655371 - L1MB8 LINE L1 -14 7583 6950 3687 150 128 68 chr9 22616167 22617026 -119654418 - L1MA1 LINE L1 0 6302 5392 480 293 56 30 chr9 22617215 22617413 -119654031 + MER102b DNA MER1_type 125 327 -14 2166 198 104 57 chr9 22617508 22617867 -119653577 + L1ME2 LINE L1 5353 5693 -471 2319 113 44 3 chr9 22617867 22618231 -119653213 + L1PA11 LINE L1 5796 6174 0 2166 198 104 57 chr9 22618231 22618523 -119652921 + L1ME2 LINE L1 5693 6035 -129 1191 183 97 10 chr9 22618523 22618822 -119652622 + MER33 DNA MER1_type 1 315 -9 372 219 8 84 chr9 22618822 22618941 -119652503 + L1ME2 LINE L1 6046 6155 -9 227 340 72 10 chr9 22622472 22622569 -119648875 + MER5A DNA MER1_type 86 188 -1 707 213 104 33 chr9 22622612 22622823 -119648621 + Charlie7 DNA MER1_type 52 277 -2335 183 100 0 0 chr9 22622896 22622926 -119648518 + (TG)n Simple_repeat Simple_repeat 2 31 0 1781 153 10 16 chr9 22623012 22623325 -119648119 - AluJb SINE Alu -1 311 1 971 105 20 7 chr9 22623423 22623575 -119647869 - L1MA3 LINE L1 0 6305 6152 8401 196 43 25 chr9 22623585 22627510 -119643934 - L1MB8 LINE L1 -1154 6411 2500 776 193 17 44 chr9 22627794 22627975 -119643469 + L1M4 LINE L1 5584 5759 -419 217 411 47 0 chr9 22628004 22628111 -119643333 - L2 LINE L2 -1 3271 3160 2399 100 0 0 chr9 22628114 22628425 -119643019 - AluSx SINE Alu -1 311 1 336 282 74 42 chr9 22628988 22629204 -119642240 - L1ME4a LINE L1 -49 6072 5850 216 0 0 0 chr9 22629207 22629231 -119642213 + (TA)n Simple_repeat Simple_repeat 2 25 0 533 260 51 60 chr9 22629235 22629456 -119641988 - L1ME4a LINE L1 -349 5772 5593 381 276 241 17 chr9 22630603 22630777 -119640667 - MIR SINE MIR -18 244 32 1655 174 21 26 chr9 22630821 22631161 -119640283 - L1MB8 LINE L1 -6 6172 5835 24 0 0 0 chr9 22631658 22631682 -119639762 + AT_rich Low_complexity Low_complexity 1 24 0 3252 147 82 15 chr9 22631782 22632389 -119639055 - MER39B LTR ERV1 0 653 6 28 0 0 0 chr9 22632626 22632654 -119638790 + AT_rich Low_complexity Low_complexity 1 28 0 1104 241 108 6 chr9 22633416 22633739 -119637705 + Charlie2 DNA MER1_type 4 359 -2423 1078 198 111 97 chr9 22633763 22634075 -119637369 + Charlie2 DNA MER1_type 2254 2579 -283 336 80 0 0 chr9 22634075 22634125 -119637319 - L1PB4 LINE L1 0 6156 6107 1078 198 111 97 chr9 22634125 22634408 -119637036 + Charlie2 DNA MER1_type 2579 2857 -5 320 336 37 108 chr9 22634531 22634799 -119636645 + L2 LINE L2 3019 3267 -5 452 288 144 12 chr9 22635347 22635507 -119635937 + MER5A DNA MER1_type 9 189 0 1104 225 9 0 chr9 22635558 22635780 -119635664 + MER58A DNA MER1_type 1 224 0 203 211 26 0 chr9 22635834 22635872 -119635572 - L2 LINE L2 -25 3247 3209 382 246 155 7 chr9 22638175 22638317 -119633127 - MIR SINE MIR -98 164 2 23 0 0 0 chr9 22638736 22638759 -119632685 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr9 22638928 22638956 -119632488 + AT_rich Low_complexity Low_complexity 1 28 0 245 348 11 11 chr9 22639091 22639180 -119632264 - L2 LINE L2 -467 2847 2759 26 50 0 0 chr9 22639187 22639227 -119632217 + AT_rich Low_complexity Low_complexity 1 40 0 13053 162 25 15 chr9 22639227 22642800 -119628644 - L1MA3 LINE L1 -5 6300 2697 2057 130 3 22 chr9 22642857 22643173 -119628271 + AluSq SINE Alu 1 310 -3 417 335 120 5 chr9 22643189 22643389 -119628055 - L1M4c LINE L1 -4874 1510 1288 21 36 0 0 chr9 22643389 22643417 -119628027 + AT_rich Low_complexity Low_complexity 1 28 0 226 0 59 0 chr9 22643459 22643493 -119627951 + (TA)n Simple_repeat Simple_repeat 1 36 0 1467 194 28 22 chr9 22643493 22643849 -119627595 + L1MB8 LINE L1 5815 6172 -6 693 174 154 25 chr9 22643872 22644055 -119627389 - L1MD2 LINE L1 -73 7912 6194 777 169 14 12 chr9 22644055 22644199 -119627245 - THE1B LTR MaLR 0 364 246 1780 132 69 0 chr9 22644286 22644575 -119626869 - AluSx SINE Alu -3 309 1 198 0 0 0 chr9 22646563 22646585 -119624859 + (TTG)n Simple_repeat Simple_repeat 2 23 0 265 323 0 0 chr9 22647276 22647338 -119624106 + L2 LINE L2 3209 3270 -2 22 0 0 0 chr9 22648248 22648270 -119623174 + AT_rich Low_complexity Low_complexity 1 22 0 232 204 23 0 chr9 22648699 22648743 -119622701 - L2 LINE L2 -4 3268 3224 210 305 67 67 chr9 22648742 22648847 -119622597 - MIR SINE MIR -157 105 1 * 219 354 0 0 chr9 22648847 22648912 -119622532 - L2 LINE L2 -91 3181 3117 211 315 163 11 chr9 22650135 22650227 -119621217 - MIR SINE MIR -111 151 46 273 109 0 0 chr9 22650636 22650682 -119620762 + (T)n Simple_repeat Simple_repeat 1 46 0 528 32 0 0 chr9 22651271 22651334 -119620110 + L1P LINE L1 4168 4230 -1916 2536 152 7 14 chr9 22654228 22654648 -119616796 + MER47B DNA MER2_type 1 417 -1 2073 121 0 3 chr9 22654685 22654982 -119616462 + AluSx SINE Alu 1 296 -16 2175 117 3 0 chr9 22655386 22655693 -119615751 + AluSg SINE Alu 1 308 -2 343 204 0 23 chr9 22657539 22657629 -119613815 - MIR SINE MIR -114 94 10 2404 100 0 0 chr9 22657831 22658141 -119613303 - AluSx SINE Alu -2 310 1 1897 208 82 45 chr9 22658168 22658733 -119612711 - L1ME LINE L1 -391 5775 5192 2365 107 0 0 chr9 22658733 22659043 -119612401 - AluSg SINE Alu 0 310 1 1897 208 82 45 chr9 22659043 22659112 -119612332 - L1ME LINE L1 -974 5192 5127 241 199 3 5 chr9 22659190 22659221 -119612223 - L1MA10 LINE L1 0 6334 6304 1980 164 31 19 chr9 22659221 22659581 -119611863 + THE1B LTR MaLR 1 364 0 241 199 3 5 chr9 22659581 22659994 -119611450 - L1MA10 LINE L1 -30 6304 5748 * 3879 242 109 22 chr9 22659992 22661470 -119609974 - L1ME LINE L1 -1084 5062 3457 13337 142 49 17 chr9 22661509 22663633 -119607811 + Tigger1 DNA MER2_type 22 2229 -189 955 196 0 0 chr9 22663633 22663796 -119607648 - FAM SINE Alu -12 163 1 13337 142 49 17 chr9 22663796 22663993 -119607451 + Tigger1 DNA MER2_type 2229 2418 0 6733 215 38 29 chr9 22664302 22667344 -119604100 - L1MC1 LINE L1 -5 6608 3559 7714 219 44 36 chr9 22667382 22670223 -119601221 - L1MC1 LINE L1 -3379 3047 27 186 167 0 0 chr9 22671493 22671529 -119599915 + GA-rich Low_complexity Low_complexity 4 39 0 369 0 0 0 chr9 22671799 22671840 -119599604 + (TG)n Simple_repeat Simple_repeat 2 42 0 21 0 0 0 chr9 22672406 22672427 -119599017 + AT_rich Low_complexity Low_complexity 1 21 0 189 182 114 91 chr9 22672711 22672799 -119598645 - L2 LINE L2 -20 3293 3204 629 263 26 5 chr9 22673586 22673776 -119597668 - L1ME1 LINE L1 -3 6163 5970 1199 309 43 15 chr9 22673963 22674330 -119597114 + L2 LINE L2 2583 2985 -328 3269 137 29 55 chr9 22674330 22674986 -119596458 - L1MB5 LINE L1 0 6174 5536 1199 309 43 15 chr9 22674986 22675102 -119596342 + L2 LINE L2 2985 3096 -217 21 0 0 0 chr9 22676109 22676130 -119595314 + AT_rich Low_complexity Low_complexity 1 21 0 184 188 0 0 chr9 22676713 22676745 -119594699 + L2 LINE L2 3261 3292 -21 24 0 0 0 chr9 22677368 22677392 -119594052 + AT_rich Low_complexity Low_complexity 1 24 0 308 331 29 6 chr9 22678018 22678190 -119593254 + L2 LINE L2 2214 2389 -925 201 311 108 75 chr9 22678195 22678623 -119592821 + L2 LINE L2 2813 3254 -18 21 36 0 0 chr9 22678683 22678711 -119592733 + AT_rich Low_complexity Low_complexity 1 28 0 280 314 82 8 chr9 22679023 22679145 -119592299 - MER5A DNA MER1_type -50 128 9 183 129 0 0 chr9 22679283 22679314 -119592130 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 291 307 124 15 chr9 22679428 22679565 -119591879 - L2 LINE L2 0 3272 3121 338 296 121 67 chr9 22679768 22680008 -119591436 - MIR SINE MIR 0 262 10 502 232 88 0 chr9 22682266 22682391 -119589053 - MIR SINE MIR -110 152 17 796 243 123 0 chr9 22682466 22682734 -119588710 + L1ME LINE L1 5285 5585 -577 411 21 0 0 chr9 22683749 22683797 -119587647 + (CA)n Simple_repeat Simple_repeat 2 49 0 866 165 0 0 chr9 22684590 22684723 -119586721 + AluJb SINE Alu 1 133 -179 3765 259 126 23 chr9 22684828 22686481 -119584963 - L2 LINE L2 0 3313 1504 350 152 13 76 chr9 22687101 22687180 -119584264 - MLT1A2 LTR MaLR -296 78 5 23 0 0 0 chr9 22687661 22687684 -119583760 + AT_rich Low_complexity Low_complexity 1 23 0 2683 14 0 3 chr9 22689049 22689346 -119582098 + AluYa5 SINE Alu 1 296 -15 9290 38 2 0 chr9 22689674 22691581 -119579863 + L1PA3 LINE L1 4244 6155 0 21 0 0 0 chr9 22691581 22691602 -119579842 + AT_rich Low_complexity Low_complexity 1 21 0 224 242 32 16 chr9 22692145 22692207 -119579237 + C-rich Low_complexity Low_complexity 6 68 0 201 178 0 0 chr9 22692224 22692269 -119579175 + CT-rich Low_complexity Low_complexity 2 46 0 2616 170 21 35 chr9 22692308 22692884 -119578560 - L1MB8 LINE L1 -10 6168 5601 1178 170 174 31 chr9 22695016 22695275 -119576169 + AluSx SINE Alu 1 296 -6 734 185 20 29 chr9 22696631 22696821 -119574623 - L1MC4a LINE L1 -6 7802 7638 2008 159 23 79 chr9 22696880 22697359 -119574085 - Ricksha_c DNA DNA -8 2038 1587 1425 124 20 0 chr9 22697362 22697588 -119573856 + AluSg/x SINE Alu 74 303 0 9544 136 46 6 chr9 22697588 22699101 -119572343 - Ricksha_c DNA DNA -448 1598 25 616 178 17 8 chr9 22699101 22699261 -119572183 - L1ME2 LINE L1 -299 5865 5730 514 269 7 28 chr9 22699786 22699927 -119571517 - LTR33 LTR ERVL 0 521 384 868 295 30 22 chr9 22699992 22700263 -119571181 - LTR33 LTR ERVL -241 280 8 743 330 142 30 chr9 22700812 22701426 -119570018 - L2 LINE L2 -299 3014 2333 1833 260 47 37 chr9 22702815 22703600 -119567844 + L1M4 LINE L1 2378 3170 -2976 855 134 30 8 chr9 22703973 22704107 -119567337 - AluSq SINE Alu -26 287 151 399 124 0 93 chr9 22704261 22704392 -119567052 + L1PA11 LINE L1 6087 6174 0 206 340 0 43 chr9 22704871 22704965 -119566479 - L2 LINE L2 -9 3263 3174 656 275 69 30 chr9 22707701 22707934 -119563510 + MIR SINE MIR 6 247 -15 2366 93 3 0 chr9 22710255 22710567 -119560877 + AluSp SINE Alu 1 313 0 298 229 4 2 chr9 22710587 22710643 -119560801 - MER5B DNA MER1_type -1 177 128 27 62 0 0 chr9 22710651 22710699 -119560745 + AT_rich Low_complexity Low_complexity 1 48 0 250 167 15 15 chr9 22710724 22710790 -119560654 + (TA)n Simple_repeat Simple_repeat 1 66 0 426 297 85 0 chr9 22710791 22710909 -119560535 - MER5B DNA MER1_type -48 130 3 416 306 25 46 chr9 22710915 22711111 -119560333 + MIR3 SINE MIR 16 207 -1 248 370 45 30 chr9 22711081 22711281 -119560163 + MIR SINE MIR 60 262 0 * 21 0 0 0 chr9 22711514 22711535 -119559909 + AT_rich Low_complexity Low_complexity 1 21 0 189 132 0 0 chr9 22712744 22712782 -119558662 + (T)n Simple_repeat Simple_repeat 1 38 0 1176 164 206 21 chr9 22715429 22715667 -119555777 + AluSx SINE Alu 17 298 -14 6160 137 20 26 chr9 22716948 22717308 -119554136 - L1PB1 LINE L1 -1 6150 5790 231 36 0 0 chr9 22717308 22717336 -119554108 + (TG)n Simple_repeat Simple_repeat 2 29 0 6160 137 20 26 chr9 22717336 22718477 -119552967 - L1PB1 LINE L1 -361 5790 4664 1606 224 10 19 chr9 22718469 22718885 -119552559 + L1PB1 LINE L1 4246 4657 -1489 * 2011 141 7 0 chr9 22719141 22719446 -119551998 - AluSq SINE Alu -6 307 1 1112 54 0 0 chr9 22720294 22720424 -119551020 + AluY SINE Alu 1 130 -181 10813 32 7 0 chr9 22720424 22722485 -119548959 + L1PA4 LINE L1 4080 6155 0 331 144 56 11 chr9 22722623 22722713 -119548731 + L1MB3 LINE L1 6087 6180 -3 1417 67 0 26 chr9 22722732 22722927 -119548517 + AluY SINE Alu 119 308 -3 230 136 0 17 chr9 22723452 22723511 -119547933 + (TTTTA)n Simple_repeat Simple_repeat 3 60 0 1968 48 0 8 chr9 22723512 22723760 -119547684 - L1PA5 LINE L1 -1 6153 5908 514 73 0 0 chr9 22723760 22723828 -119547616 - L1PA6 LINE L1 -199 5955 5888 1864 166 7 13 chr9 22724044 22724345 -119547099 - AluJb SINE Alu -12 300 2 441 288 72 68 chr9 22724371 22724607 -119546837 - MIR SINE MIR -6 256 20 22 0 0 0 chr9 22724717 22724739 -119546705 + AT_rich Low_complexity Low_complexity 1 22 0 184 227 167 0 chr9 22725132 22725198 -119546246 + MIR SINE MIR 186 262 0 22 0 0 0 chr9 22725277 22725299 -119546145 + AT_rich Low_complexity Low_complexity 1 22 0 530 243 110 66 chr9 22726423 22726695 -119544749 - L2 LINE L2 -9 3304 3021 315 281 42 21 chr9 22729713 22729809 -119541635 - MIR SINE MIR -131 131 34 221 282 42 14 chr9 22729824 22729835 -119541609 - MIR SINE MIR -56 206 197 399 41 0 0 chr9 22729835 22729884 -119541560 + (TTCA)n Simple_repeat Simple_repeat 4 52 0 221 282 42 14 chr9 22729884 22729943 -119541501 - MIR SINE MIR -65 197 134 350 302 178 25 chr9 22730144 22730346 -119541098 + MIR SINE MIR 7 239 -23 1853 181 35 0 chr9 22731059 22731435 -119540009 + L1MB3 LINE L1 5795 6183 0 227 375 38 50 chr9 22733122 22733282 -119538162 - L2 LINE L2 -5 3267 3110 301 310 51 61 chr9 22733884 22734081 -119537363 - L1ME4a LINE L1 0 6121 5927 191 306 0 0 chr9 22734107 22734156 -119537288 + MIR SINE MIR 123 171 -91 222 286 16 32 chr9 22734552 22734615 -119536829 - L2 LINE L2 0 3272 3211 528 337 22 8 chr9 22734939 22735123 -119536321 - MIR SINE MIR -58 150 3 277 315 47 55 chr9 22735125 22735252 -119536192 - MIR3 SINE MIR -37 171 46 423 163 70 12 chr9 22789342 22789428 -119482016 + MLT1A2 LTR MaLR 284 374 0 466 170 54 0 chr9 22791742 22791854 -119479590 + L1MD3 LINE L1 7878 7995 0 25 31 0 0 chr9 22792061 22792093 -119479351 + AT_rich Low_complexity Low_complexity 1 32 0 306 238 114 9 chr9 22792155 22792260 -119479184 - L1ME4a LINE L1 -52 6069 5954 1409 119 103 0 chr9 22792483 22792744 -119478700 - L1MA7 LINE L1 -6 6285 5998 220 266 144 40 chr9 22793393 22793490 -119477954 - L2 LINE L2 -95 3218 3132 3366 147 21 2 chr9 22793490 22794007 -119477437 - MER1A DNA MER1_type 0 527 1 220 266 144 40 chr9 22794007 22794082 -119477362 - L2 LINE L2 -181 3132 3028 263 333 108 17 chr9 22794221 22794341 -119477103 - MIR SINE MIR -62 146 16 998 181 33 0 chr9 22795188 22795370 -119476074 - MER5A DNA MER1_type 0 189 2 292 244 126 8 chr9 22795586 22795713 -119475731 - L1ME4a LINE L1 -2304 5504 5363 2151 117 0 13 chr9 22795715 22796023 -119475421 + AluSx SINE Alu 1 304 -8 337 236 173 0 chr9 22796029 22796156 -119475288 - L1 LINE L1 -992 5154 5006 2991 187 132 25 chr9 22796160 22797046 -119474398 - L1 LINE L1 -1191 4955 3975 312 197 14 197 chr9 22797091 22797143 -119474301 - MIR SINE MIR -113 149 138 2773 160 46 0 chr9 22797143 22797669 -119473775 + L1MB7 LINE L1 5628 6177 -7 312 197 14 197 chr9 22797669 22797758 -119473686 - MIR SINE MIR -124 138 34 251 254 91 18 chr9 22799047 22799157 -119472287 + L1ME4a LINE L1 5974 6091 -30 307 360 20 30 chr9 22799437 22799637 -119471807 - L2 LINE L2 -246 3026 2829 214 182 45 0 chr9 22800656 22800700 -119470744 + MIR3 SINE MIR 157 202 -6 369 233 142 25 chr9 22801127 22801247 -119470197 - MIR SINE MIR 0 262 129 436 219 171 8 chr9 22802069 22802190 -119469254 - L2 LINE L2 0 3313 3173 498 234 113 101 chr9 22802190 22802447 -119468997 + MIR SINE MIR 3 262 0 12984 45 10 5 chr9 22803923 22806318 -119465126 + L1PA5 LINE L1 3750 6153 -1 2382 73 0 10 chr9 22806509 22806809 -119464635 - AluSc SINE Alu -12 297 1 241 300 14 0 chr9 22808307 22808377 -119463067 - L2 LINE L2 0 3272 3202 319 353 25 17 chr9 22808828 22808947 -119462497 - MIR SINE MIR -64 144 25 201 297 27 40 chr9 22810443 22810517 -119460927 - MIR SINE MIR -79 183 111 2339 109 0 0 chr9 22810787 22811098 -119460346 + AluSq SINE Alu 1 311 -2 2258 161 0 43 chr9 22812530 22812947 -119458497 - MER47B DNA MER2_type 0 418 20 1750 131 29 35 chr9 22813093 22813405 -119458039 + AluSx SINE Alu 1 310 -2 206 318 0 15 chr9 22814002 22814068 -119457376 - MER5A DNA MER1_type -14 175 111 288 291 27 0 chr9 22814263 22814373 -119457071 + MIR SINE MIR 129 241 -21 27 29 0 0 chr9 22814383 22814417 -119457027 + GC_rich Low_complexity Low_complexity 1 34 0 2147 119 0 0 chr9 22814963 22815265 -119456179 + AluJb SINE Alu 2 303 -9 299 265 0 61 chr9 22815631 22815729 -119455715 - MIR SINE MIR -117 145 54 296 138 86 0 chr9 22817903 22817961 -119453483 + L2 LINE L2 3251 3313 0 1313 230 66 34 chr9 22818321 22819246 -119452198 + L1ME1 LINE L1 5042 6159 -7 345 234 186 28 chr9 22819950 22820095 -119451349 - MER96 DNA MER1_type? -6 169 2 858 160 57 61 chr9 22820584 22820796 -119450648 + MER2 DNA MER2_type 1 211 -134 875 139 0 29 chr9 22821285 22821422 -119450022 - FLAM_A SINE Alu 0 133 1 504 198 0 0 chr9 22821536 22821627 -119449817 + AluJ/FLAM SINE Alu 1 91 -221 24 0 0 0 chr9 22822223 22822247 -119449197 + AT_rich Low_complexity Low_complexity 1 24 0 302 292 91 32 chr9 22822305 22822459 -119448985 + MIR SINE MIR 34 196 -66 23 0 0 0 chr9 22823666 22823689 -119447755 + AT_rich Low_complexity Low_complexity 1 23 0 506 301 60 19 chr9 22823698 22823967 -119447477 + L1MC/D LINE L1 4330 4609 -1537 1287 72 0 0 chr9 22823992 22824145 -119447299 + AluY SINE Alu 1 153 -158 468 288 97 67 chr9 22824160 22824605 -119446839 + L1MC/D LINE L1 4623 5080 -1066 417 269 24 111 chr9 22824648 22824709 -119446735 + L1MC/D LINE L1 5315 5380 -2428 2268 114 0 0 chr9 22824709 22824999 -119446445 - AluSx SINE Alu -22 290 1 417 269 24 111 chr9 22824999 22825145 -119446299 + L1MC/D LINE L1 5380 5504 -2304 2963 217 66 24 chr9 22825393 22826481 -119444963 - L1ME2 LINE L1 -1 6232 5108 1292 229 145 30 chr9 22826485 22827009 -119444435 - L1ME2 LINE L1 -1818 4397 3814 988 268 96 40 chr9 22827017 22827577 -119443867 - L1ME2 LINE L1 -3925 2471 1944 189 0 0 0 chr9 22827577 22827598 -119443846 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 2388 32 0 7 chr9 22827598 22827879 -119443565 - AluY SINE Alu -32 279 1 988 268 96 40 chr9 22827879 22828012 -119443432 - L1ME2 LINE L1 -4451 1945 1738 253 320 138 29 chr9 22828342 22828617 -119442827 - L1ME2 LINE L1 -5961 435 131 793 264 34 10 chr9 22829918 22830126 -119441318 - MIR SINE MIR -4 258 46 2060 209 24 7 chr9 22831762 22832219 -119439225 - MLT2B3 LTR ERVL -29 507 75 382 92 77 0 chr9 22832323 22832388 -119439056 - MLT2B3 LTR ERVL -483 71 2 378 0 0 0 chr9 22832388 22832430 -119439014 + (TG)n Simple_repeat Simple_repeat 1 42 0 23 54 0 0 chr9 22832460 22832497 -119438947 + AT_rich Low_complexity Low_complexity 1 37 0 246 260 136 63 chr9 22832812 22833023 -119438421 - MIR SINE MIR -24 184 8 8981 99 21 1 chr9 22833078 22834339 -119437105 - HSMAR1 DNA Mariner 0 1287 1 1421 239 59 10 chr9 22835079 22835485 -119435959 - MLT1C LTR MaLR -41 426 1 425 284 148 39 chr9 22835566 22835721 -119435723 + MER5A DNA MER1_type 5 176 -13 2006 103 13 3 chr9 22835772 22836084 -119435360 - MER57B LTR ERV1 0 434 120 208 303 253 10 chr9 22836125 22836224 -119435220 - MER5B DNA MER1_type -43 135 13 698 98 62 0 chr9 22836270 22836382 -119435062 - MER57B LTR ERV1 -315 119 1 351 231 32 128 chr9 22836382 22836412 -119435032 + MER5A DNA MER1_type 47 78 -111 2171 113 3 25 chr9 22836412 22836731 -119434713 + AluSx SINE Alu 1 312 0 351 231 32 128 chr9 22836731 22836856 -119434588 + MER5A DNA MER1_type 78 187 -2 1605 169 178 11 chr9 22836857 22837223 -119434221 + MSTA LTR MaLR 2 428 0 199 255 0 21 chr9 22837545 22837592 -119433852 - MER5B DNA MER1_type -42 136 91 2147 151 49 77 chr9 22838025 22838388 -119433056 + LTR32 LTR ERVL 15 364 -107 318 87 0 0 chr9 22838388 22838434 -119433010 + (CAAA)n Simple_repeat Simple_repeat 3 48 0 2147 151 49 77 chr9 22838434 22838540 -119432904 + LTR32 LTR ERVL 364 471 0 442 245 128 37 chr9 22838561 22838749 -119432695 - L2 LINE L2 -67 3246 3042 898 186 46 0 chr9 22838904 22839098 -119432346 - MER3 DNA MER1_type -6 203 1 2060 166 11 11 chr9 22839848 22840197 -119431247 + MLT1A1 LTR MaLR 17 365 0 2157 115 0 3 chr9 22840470 22840782 -119430662 + AluSq SINE Alu 2 312 0 3618 88 8 6 chr9 22840914 22841411 -119430033 + L1PA11 LINE L1 5666 6163 -11 31 110 0 0 chr9 22841421 22841557 -119429887 + AT_rich Low_complexity Low_complexity 1 136 0 233 303 273 0 chr9 22842754 22842886 -119428558 + MIR SINE MIR 94 261 -1 21 0 0 0 chr9 22843367 22843388 -119428056 + AT_rich Low_complexity Low_complexity 1 21 0 186 222 0 0 chr9 22843423 22843459 -119427985 - MIR SINE MIR -62 146 111 331 230 90 10 chr9 22843540 22843640 -119427804 + MER117 DNA MER1_type 41 148 -49 180 111 0 0 chr9 22843878 22843905 -119427539 + (T)n Simple_repeat Simple_repeat 1 27 0 576 277 59 31 chr9 22845008 22845241 -119426203 - MIR SINE MIR 0 262 21 199 360 105 12 chr9 22845401 22845487 -119425957 - MIR SINE MIR -99 109 16 356 294 149 23 chr9 22845760 22845981 -119425463 - L1ME4a LINE L1 -9 6112 5864 23 78 0 0 chr9 22846023 22846074 -119425370 + AT_rich Low_complexity Low_complexity 1 51 0 6649 30 4 0 chr9 22846179 22846971 -119424473 + L1PA4 LINE L1 5361 6155 0 201 39 0 0 chr9 22846985 22847011 -119424433 + (CAAAA)n Simple_repeat Simple_repeat 3 28 0 377 173 27 0 chr9 22847027 22847102 -119424342 - L1ME4a LINE L1 -454 5667 5591 23 33 0 0 chr9 22847163 22847193 -119424251 + AT_rich Low_complexity Low_complexity 1 30 0 24 53 0 0 chr9 22847587 22847625 -119423819 + AT_rich Low_complexity Low_complexity 1 38 0 337 322 49 53 chr9 22848174 22848438 -119423006 + MLT1J LTR MaLR 245 507 -4 264 257 14 0 chr9 22849756 22849826 -119421618 + MLT1K LTR MaLR 510 580 -8 1930 164 23 33 chr9 22852272 22852663 -119418781 - L1MA8 LINE L1 -3 6288 5902 203 200 0 0 chr9 22852762 22852802 -119418642 - MIR SINE MIR -160 102 63 252 0 0 0 chr9 22852868 22852896 -119418548 + (A)n Simple_repeat Simple_repeat 1 28 0 572 246 68 35 chr9 22853577 22853744 -119417700 + MIR SINE MIR 32 192 -70 554 82 12 0 chr9 22853744 22853829 -119417615 + (TCTA)n Simple_repeat Simple_repeat 3 88 0 198 0 0 0 chr9 22853830 22853852 -119417592 + (CTAG)n Simple_repeat Simple_repeat 1 22 0 572 246 68 35 chr9 22853852 22853912 -119417532 + MIR SINE MIR 191 262 0 2825 172 27 22 chr9 22853978 22854576 -119416868 + L1MB3 LINE L1 5581 6181 -2 2612 242 63 45 chr9 22854982 22855281 -119416163 - L1ME1 LINE L1 -4 6162 5870 1971 137 10 0 chr9 22855281 22855581 -119415863 - AluSx SINE Alu -9 303 1 2612 242 63 45 chr9 22855581 22856255 -119415189 - L1ME1 LINE L1 -296 5870 5171 680 183 0 122 chr9 22856984 22857230 -119414214 - L1ME4a LINE L1 -759 5387 5172 483 271 17 18 chr9 22858834 22859010 -119412434 + MIR SINE MIR 76 248 -14 39 60 0 0 chr9 22860052 22860119 -119411325 + AT_rich Low_complexity Low_complexity 1 67 0 1085 216 96 75 chr9 22861186 22861519 -119409925 - MER2 DNA MER2_type 0 345 6 338 154 0 77 chr9 22862044 22862109 -119409335 + MLT1G LTR MaLR 232 291 -299 276 264 115 44 chr9 22862241 22862470 -119408974 + L1MC4a LINE L1 5679 5822 -332 27 62 0 0 chr9 22862739 22862787 -119408657 + AT_rich Low_complexity Low_complexity 1 48 0 371 256 50 33 chr9 22862872 22863052 -119408392 + L1ME4a LINE L1 5928 6110 -11 484 244 188 6 chr9 22863586 22863746 -119407698 - MIR SINE MIR 0 262 74 1145 209 77 7 chr9 22864000 22864297 -119407147 - MER33 DNA MER1_type 0 324 7 1944 244 95 52 chr9 22865595 22865741 -119405703 - L1ME3A LINE L1 -10 6440 6302 1539 222 28 19 chr9 22865741 22866101 -119405343 - MLT1A1 LTR MaLR -2 363 1 1944 244 95 52 chr9 22866101 22866754 -119404690 - L1ME3A LINE L1 -148 6302 5607 1230 252 101 83 chr9 22866776 22867860 -119403584 + L1M4 LINE L1 4204 5306 -840 1594 165 57 6 chr9 22867992 22868308 -119403136 + L1MC3 LINE L1 7282 7613 -172 22 0 0 0 chr9 22868379 22868401 -119403043 + AT_rich Low_complexity Low_complexity 1 22 0 385 72 0 58 chr9 22868520 22868589 -119402855 - L1MC1 LINE L1 0 6333 6269 3758 231 16 14 chr9 22868596 22869677 -119401767 - L1ME3A LINE L1 -2155 4271 3189 698 239 25 5 chr9 22869675 22869872 -119401572 + L1M2 LINE L1 2472 2672 -4177 * 12273 93 20 2 chr9 22869875 22871554 -119399890 + L1P3 LINE L1 20 1727 -4734 5043 127 22 4 chr9 22871564 22872335 -119399109 + Tigger2 DNA MER2_type 1933 2717 -1 414 106 59 0 chr9 22872429 22872624 -119398820 + (TA)n Simple_repeat Simple_repeat 1 206 0 1272 157 4 38 chr9 22872904 22872969 -119398475 - L1MCa LINE L1 -3947 2479 2413 2244 94 3 3 chr9 22872969 22873266 -119398178 - AluY SINE Alu -14 297 1 1272 157 4 38 chr9 22873266 22873503 -119397941 - L1MCa LINE L1 -4013 2413 2238 * 1475 157 87 36 chr9 22873480 22874220 -119397224 - L1MCa LINE L1 -4426 2000 1299 4003 171 74 12 chr9 22874220 22874965 -119396479 + MER54B LTR ERVL 3 793 0 1475 157 87 36 chr9 22874965 22875021 -119396423 - L1MCa LINE L1 -5127 1299 1247 2127 117 3 7 chr9 22875021 22875330 -119396114 - AluSc SINE Alu -1 308 1 1475 157 87 36 chr9 22875330 22876242 -119395202 - L1MCa LINE L1 -5179 1247 32 38 89 0 0 chr9 22876522 22876623 -119394821 + AT_rich Low_complexity Low_complexity 1 101 0 410 230 52 22 chr9 22876879 22877014 -119394430 + Charlie1 DNA MER1_type 2623 2761 0 1759 233 18 14 chr9 22877814 22878252 -119393192 + MER39 LTR ERV1 262 701 -6 3294 145 59 16 chr9 22878372 22878998 -119392446 + MER39B LTR ERV1 1 653 0 197 254 175 0 chr9 22879120 22879183 -119392261 - MIR SINE MIR -34 228 155 560 220 30 8 chr9 22879915 22880047 -119391397 - MIR SINE MIR -21 241 107 182 219 109 47 chr9 22880500 22880564 -119390880 + L2 LINE L2 3201 3268 -4 480 223 19 0 chr9 22881437 22881540 -119389904 - L1MC/D LINE L1 -783 5550 5446 363 299 125 27 chr9 22881735 22881959 -119389485 - L1MC/D LINE L1 -1332 4814 4569 23 0 0 0 chr9 22882246 22882269 -119389175 + AT_rich Low_complexity Low_complexity 1 23 0 582 282 57 43 chr9 22882592 22882801 -119388643 - MIR SINE MIR -35 227 16 1496 216 0 3 chr9 22882871 22883154 -119388290 - AluJo SINE Alu -24 288 7 3260 190 86 17 chr9 22883161 22884549 -119386895 - L1MB2 LINE L1 -3 6168 4686 704 154 0 0 chr9 22884550 22884654 -119386790 + AluSg/x SINE Alu 197 300 -10 1464 214 12 3 chr9 22884657 22885003 -119386441 - L1MB2 LINE L1 -1459 4687 4339 767 220 0 0 chr9 22885010 22885160 -119386284 - MSTD LTR MaLR -11 385 236 183 257 69 40 chr9 22885426 22885527 -119385917 + MIR SINE MIR 8 111 -151 2645 146 46 70 chr9 22885576 22885805 -119385639 + L1MA2 LINE L1 3874 4107 -2039 1935 153 0 3 chr9 22885805 22886099 -119385345 - AluSx SINE Alu -19 293 1 2645 146 46 70 chr9 22886099 22886316 -119385128 + L1MA2 LINE L1 4107 4303 -1843 5169 118 29 1 chr9 22886316 22887137 -119384307 + L1MA2 LINE L1 5461 6304 0 2645 146 46 70 chr9 22887137 22887319 -119384125 + L1MA2 LINE L1 4303 4488 -1658 2400 46 6 56 chr9 22888589 22888912 -119382532 + AluY SINE Alu 1 307 -4 227 352 28 101 chr9 22890224 22890659 -119380785 - L2 LINE L2 -57 3215 2813 3564 236 28 21 chr9 22890772 22891743 -119379701 + Charlie1a DNA MER1_type 6 983 -472 313 328 60 48 chr9 22891845 22892095 -119379349 + MIR SINE MIR 10 262 0 26 30 0 0 chr9 22892445 22892478 -119378966 + AT_rich Low_complexity Low_complexity 1 33 0 29 70 0 0 chr9 22893078 22893135 -119378309 + AT_rich Low_complexity Low_complexity 1 57 0 315 302 9 9 chr9 22893501 22893607 -119377837 - MARNA DNA Mariner -307 279 174 5623 238 66 25 chr9 22894577 22896887 -119374557 + L1ME1 LINE L1 16 2549 -4097 273 119 0 0 chr9 22897120 22897162 -119374282 + (CA)n Simple_repeat Simple_repeat 1 42 0 2732 219 132 27 chr9 22897577 22898718 -119372726 + L1ME1 LINE L1 2714 3973 -2671 35 78 0 0 chr9 22899012 22899089 -119372355 + AT_rich Low_complexity Low_complexity 1 77 0 6174 165 40 7 chr9 22899236 22901562 -119369882 - L1PBa LINE L1 -2546 4316 1855 514 269 28 7 chr9 22901614 22901759 -119369685 + MIR SINE MIR 109 256 -6 3034 156 76 18 chr9 22902700 22903317 -119368127 - MER39B LTR ERV1 0 653 1 1763 217 24 22 chr9 22903436 22903881 -119367563 - MER39 LTR ERV1 -4 682 260 227 214 71 71 chr9 22903872 22903956 -119367488 - LTR48B LTR ERV1 -560 84 1 * 1397 213 68 18 chr9 22905560 22905959 -119365485 - Charlie1 DNA MER1_type 0 2761 2343 662 215 55 149 chr9 22906213 22906682 -119364762 - L1ME3A LINE L1 -3 6167 5743 3463 194 31 14 chr9 22906686 22907202 -119364242 - L1 LINE L1 -1455 4691 4154 1376 42 0 5 chr9 22907202 22907416 -119364028 + (TTC)n Simple_repeat Simple_repeat 1 213 0 3463 194 31 14 chr9 22907416 22907693 -119363751 - L1 LINE L1 -1992 4154 3883 3658 144 20 21 chr9 22908942 22909641 -119361803 - L1MA8 LINE L1 0 6291 5594 2548 248 65 28 chr9 22909641 22910137 -119361307 + L1ME1 LINE L1 4885 5361 -1471 8010 79 1 14 chr9 22910137 22912056 -119359388 + L1PA7 LINE L1 4206 6154 0 2548 248 65 28 chr9 22912056 22913024 -119358420 + L1ME1 LINE L1 5361 6583 -249 1394 196 85 26 chr9 22913024 22913376 -119358068 - MLT1A2 LTR MaLR 0 374 2 2548 248 65 28 chr9 22913376 22913626 -119357818 + L1ME1 LINE L1 6583 6822 -10 187 293 27 0 chr9 22913662 22913737 -119357707 + L2 LINE L2 2932 3008 -264 463 57 129 0 chr9 22915414 22915484 -119355960 - MADE1 DNA Mariner -1 79 1 4034 216 42 16 chr9 22919330 22920360 -119351084 + L1MC3 LINE L1 5407 6463 -1322 764 263 130 24 chr9 22920517 22920855 -119350589 - MER87 LTR ERV1 0 541 168 29 28 0 0 chr9 22921000 22921036 -119350408 + AT_rich Low_complexity Low_complexity 1 36 0 1605 184 7 7 chr9 22921155 22921454 -119349990 - AluJo SINE Alu -10 302 4 753 161 40 0 chr9 22921458 22921607 -119349837 + L1MA6 LINE L1 6142 6296 -4 2061 96 17 24 chr9 22922183 22922475 -119348969 - AluSc SINE Alu -16 293 4 742 344 113 25 chr9 22922542 22923106 -119348338 + L2 LINE L2 1723 2336 -978 537 74 0 0 chr9 22923311 22923392 -119348052 - L1MA3 LINE L1 0 6305 6225 22 56 0 0 chr9 22923572 22923608 -119347836 + AT_rich Low_complexity Low_complexity 1 36 0 311 131 24 24 chr9 22924866 22924950 -119346494 + (TA)n Simple_repeat Simple_repeat 2 85 0 1454 194 0 27 chr9 22925130 22925423 -119346021 - AluJo SINE Alu -15 297 13 4548 22 0 0 chr9 22926282 22927110 -119344334 - L1P2 LINE L1 -366 5789 4962 1522 33 0 0 chr9 22927110 22927291 -119344153 + L1PA4 LINE L1 5975 6155 0 186 309 53 21 chr9 22928238 22928332 -119343112 - MIR SINE MIR 0 262 166 1393 206 90 0 chr9 22929303 22929580 -119341864 + AluJo SINE Alu 1 302 -10 6947 244 64 22 chr9 22929620 22933137 -119338307 - L1PA13 LINE L1 -2546 4251 1 415 277 38 13 chr9 22933157 22933389 -119338055 + MER57-int LTR ERV1 4982 6051 -1486 1453 216 0 34 chr9 22934618 22934914 -119336530 - AluJo SINE Alu -26 286 1 879 256 62 50 chr9 22935192 22935532 -119335912 + MER57-int LTR ERV1 6794 7137 -400 1430 278 24 7 chr9 22935543 22935960 -119335484 + MER57B LTR ERV1 10 433 -1 267 31 0 0 chr9 22937532 22937564 -119333880 + (TG)n Simple_repeat Simple_repeat 1 32 0 191 141 59 24 chr9 22937586 22937671 -119333773 + (TA)n Simple_repeat Simple_repeat 1 88 0 213 244 24 0 chr9 22937674 22937756 -119333688 + (TATAA)n Simple_repeat Simple_repeat 1 84 0 407 306 113 5 chr9 22937987 22938173 -119333271 - MIR SINE MIR -3 259 54 1664 178 3 22 chr9 22938547 22938861 -119332583 - AluJb SINE Alu -4 308 1 183 42 0 0 chr9 22939295 22939319 -119332125 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 914 269 48 62 chr9 22939504 22940075 -119331369 + L1MEd LINE L1 1178 1778 -4618 24 0 0 0 chr9 22940085 22940109 -119331335 + AT_rich Low_complexity Low_complexity 1 24 0 418 242 57 78 chr9 22940163 22940601 -119330843 + L1MEd LINE L1 2020 2448 -3948 974 241 43 73 chr9 22940662 22940780 -119330664 + L1MEd LINE L1 2781 2901 -3314 2092 106 55 0 chr9 22940780 22941074 -119330370 + AluSx SINE Alu 3 312 0 974 241 43 73 chr9 22941074 22941334 -119330110 + L1MEd LINE L1 2901 3144 -3071 2339 99 0 6 chr9 22941334 22941647 -119329797 + AluSx SINE Alu 2 312 0 974 241 43 73 chr9 22941647 22941772 -119329672 + L1MEd LINE L1 3144 3271 -2944 180 0 0 0 chr9 22941774 22941794 -119329650 + (TTG)n Simple_repeat Simple_repeat 2 21 0 265 325 96 21 chr9 22941864 22942173 -119329271 + L2 LINE L2 1825 2171 -1143 24 77 0 0 chr9 22942764 22942816 -119328628 + AT_rich Low_complexity Low_complexity 1 52 0 23 0 0 0 chr9 22942844 22942867 -119328577 + AT_rich Low_complexity Low_complexity 1 23 0 1808 177 25 54 chr9 22942951 22943171 -119328273 - L1MCb LINE L1 -4946 1099 897 780 69 0 0 chr9 22943171 22943272 -119328172 - HY3 scRNA scRNA 0 101 1 1808 177 25 54 chr9 22943272 22943497 -119327947 - L1MCb LINE L1 -5148 897 667 342 98 0 0 chr9 22943535 22943586 -119327858 + (TA)n Simple_repeat Simple_repeat 1 51 0 3366 86 6 0 chr9 22943587 22944090 -119327354 - L1P5 LINE L1 -376 5775 5270 * 5646 200 10 16 chr9 22944088 22945640 -119325804 + L1P5 LINE L1 3803 5252 -894 1835 179 3 22 chr9 22945884 22946202 -119325242 + AluSx SINE Alu 1 312 0 434 88 25 0 chr9 22947065 22947145 -119324299 + (TCTA)n Simple_repeat Simple_repeat 1 82 0 272 327 95 14 chr9 22947769 22947980 -119323464 + L2 LINE L2 1723 1950 -1364 28 86 0 0 chr9 22948586 22948656 -119322788 + AT_rich Low_complexity Low_complexity 1 70 0 203 179 0 0 chr9 22948738 22948777 -119322667 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 2773 205 73 43 chr9 22949741 22950747 -119320697 - MER106B DNA MER1_type -3 1056 21 923 91 0 0 chr9 22952267 22952399 -119319045 + L1PA6 LINE L1 6023 6154 0 8116 224 30 18 chr9 22952406 22952827 -119318617 + L1MB3 LINE L1 2907 3322 -2824 2422 67 0 13 chr9 22952827 22953140 -119318304 + AluY SINE Alu 1 309 -2 8116 224 30 18 chr9 22953140 22955167 -119316277 + L1MB3 LINE L1 3322 5384 -762 459 202 0 10 chr9 22955169 22955268 -119316176 + MLT1A1 LTR MaLR 3 100 -274 773 211 0 7 chr9 22955287 22955439 -119316005 + MLT1A1 LTR MaLR 212 362 -3 2393 146 60 142 chr9 22955442 22955715 -119315729 + L1MB3 LINE L1 5380 5674 -509 216 0 0 0 chr9 22955715 22955739 -119315705 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2057 89 0 41 chr9 22955742 22956033 -119315411 - AluY SINE Alu -32 279 1 2393 146 60 142 chr9 22956033 22956596 -119314848 + L1MB3 LINE L1 5676 6151 -32 191 324 42 0 chr9 22957044 22957115 -119314329 - L2 LINE L2 -17 3296 3223 197 278 19 0 chr9 22957117 22957171 -119314273 - MIR SINE MIR -99 163 109 1891 199 25 81 chr9 22958038 22958707 -119312737 - L1MD3 LINE L1 -10 7985 7354 21 82 0 0 chr9 22959593 22959642 -119311802 + AT_rich Low_complexity Low_complexity 1 49 0 910 160 73 14 chr9 22959650 22959869 -119311575 + L1MA9 LINE L1 6071 6302 -10 527 321 111 55 chr9 22959950 22960499 -119310945 + L2 LINE L2 1716 2295 -1019 321 238 26 93 chr9 22960522 22960782 -119310662 + MER8 DNA MER2_type 7 239 0 7515 248 33 34 chr9 22962246 22965834 -119305610 + L1PA12 LINE L1 6 3055 -4526 22 35 0 0 chr9 22967462 22967491 -119303953 + AT_rich Low_complexity Low_complexity 1 29 0 2306 199 53 26 chr9 22967636 22968330 -119303114 + MER106B DNA MER1_type 16 728 -331 938 182 99 53 chr9 22968507 22968902 -119302542 + MER106B DNA MER1_type 643 1055 -4 197 143 0 20 chr9 22969866 22969915 -119301529 + (TTTA)n Simple_repeat Simple_repeat 1 48 0 3285 106 39 4 chr9 22970687 22971530 -119299914 + L1PA8A LINE L1 4907 5777 -354 6294 276 31 37 chr9 22971966 22974865 -119296579 - L1PA12 LINE L1 -5228 2353 6 660 243 21 0 chr9 22975575 22975810 -119295634 - L1M4 LINE L1 -3000 3146 2907 970 68 0 0 chr9 22975817 22975949 -119295495 - L1PA6 LINE L1 0 6154 6023 22 35 0 0 chr9 22976302 22976331 -119295113 + AT_rich Low_complexity Low_complexity 1 29 0 2748 217 68 23 chr9 22976481 22977401 -119294043 + MER106B DNA MER1_type 21 982 -77 34 0 0 0 chr9 22978452 22978486 -119292958 + AT_rich Low_complexity Low_complexity 1 34 0 21 57 0 0 chr9 22978683 22978718 -119292726 + AT_rich Low_complexity Low_complexity 1 35 0 215 329 68 27 chr9 22978719 22978865 -119292579 - L2 LINE L2 -38 3275 3124 27 73 0 0 chr9 22979573 22979628 -119291816 + AT_rich Low_complexity Low_complexity 1 55 0 1096 82 0 0 chr9 22979745 22979903 -119291541 + L1P LINE L1 4880 5037 -1109 2880 102 23 4 chr9 22980003 22980765 -119290679 - L1PA8A LINE L1 -481 5650 4880 31 58 0 0 chr9 22980883 22980935 -119290509 + AT_rich Low_complexity Low_complexity 1 52 0 211 340 61 27 chr9 22981644 22981791 -119289653 + L2 LINE L2 3124 3275 -38 23 0 0 0 chr9 22982024 22982047 -119289397 + AT_rich Low_complexity Low_complexity 1 23 0 201 171 0 0 chr9 22982047 22982082 -119289362 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 2876 206 72 23 chr9 22983120 22984030 -119287414 - MER106B DNA MER1_type -77 982 28 25 65 0 0 chr9 22985018 22985064 -119286380 + AT_rich Low_complexity Low_complexity 1 46 0 906 98 0 0 chr9 22985603 22985735 -119285709 + L1PA6 LINE L1 6023 6154 0 714 230 21 0 chr9 22985740 22985975 -119285469 + L1M4 LINE L1 2907 3146 -3000 7395 257 33 33 chr9 22986683 22990269 -119281175 + L1PA12 LINE L1 6 3055 -4526 821 89 0 16 chr9 22991532 22991655 -119279789 - L1PA8 LINE L1 0 6172 6052 202 211 0 39 chr9 22991973 22992025 -119279419 + T-rich Low_complexity Low_complexity 1 50 0 21 0 0 0 chr9 22992416 22992437 -119279007 + AT_rich Low_complexity Low_complexity 1 21 0 1662 95 5 5 chr9 22992609 22992831 -119278613 + AluSg/x SINE Alu 86 307 -5 2227 103 0 7 chr9 22993005 22993305 -119278139 + AluSc SINE Alu 1 298 -11 489 66 0 0 chr9 22993444 22993505 -119277939 - AluSg/x SINE Alu -177 133 73 250 109 0 0 chr9 22993506 22993552 -119277892 + Alu SINE Alu 251 296 -4 592 258 36 68 chr9 22993976 22994197 -119277247 + MIR SINE MIR 49 262 0 2986 157 11 0 chr9 22994509 22995052 -119276392 + L1PA12 LINE L1 2507 3055 -4526 185 228 70 0 chr9 22995243 22995300 -119276144 + L3b LINE CR1 1294 1354 -229 816 91 0 16 chr9 22996308 22996429 -119275015 - L1PA8 LINE L1 -4 6168 6050 3094 122 46 12 chr9 22996430 22997277 -119274167 - L1PA8 LINE L1 -351 5780 4907 180 340 162 15 chr9 22997303 22997562 -119273882 + L2 LINE L2 2027 2323 -991 207 146 0 0 chr9 22998063 22998104 -119273340 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 2730 205 70 24 chr9 22999144 23000037 -119271407 - MER106B DNA MER1_type -77 982 48 3208 32 0 0 chr9 23001276 23001685 -119269759 - L1PA8A LINE L1 -3248 2898 2490 * 18177 57 17 2 chr9 23001682 23004534 -119266910 + L1PA8A LINE L1 2885 5768 -363 953 64 0 0 chr9 23004547 23004672 -119266772 + L1PA8 LINE L1 6048 6172 0 7557 255 32 30 chr9 23005965 23009540 -119261904 - L1PA12 LINE L1 -4526 3055 6 7433 35 0 1 chr9 23009735 23010931 -119260513 + L1PA3 LINE L1 4988 6175 0 935 91 0 0 chr9 23011125 23011257 -119260187 + L1PA6 LINE L1 6023 6154 0 1047 244 40 9 chr9 23011257 23011683 -119259761 + L1 LINE L1 2900 3338 -2808 2308 70 0 3 chr9 23011684 23011970 -119259474 + AluY SINE Alu 1 285 -26 1726 33 0 9 chr9 23011971 23012183 -119259261 + L1PA3 LINE L1 5946 6155 0 213 94 0 0 chr9 23012411 23012443 -119259001 + (TTCC)n Simple_repeat Simple_repeat 2 33 0 844 120 0 0 chr9 23012444 23012569 -119258875 - L1PA8 LINE L1 0 6172 6048 3476 108 16 3 chr9 23012572 23013462 -119257982 - L1PA8 LINE L1 -354 5777 4880 34 55 0 0 chr9 23013580 23013635 -119257809 + AT_rich Low_complexity Low_complexity 1 55 0 27 0 0 0 chr9 23013985 23014012 -119257432 + AT_rich Low_complexity Low_complexity 1 27 0 1038 39 0 0 chr9 23014012 23014139 -119257305 - L1PA3 LINE L1 -3 6152 6026 217 340 61 27 chr9 23014496 23014643 -119256801 + L2 LINE L2 3124 3275 -38 217 197 0 30 chr9 23014872 23014938 -119256506 + (TAAA)n Simple_repeat Simple_repeat 1 64 0 2718 203 83 48 chr9 23015896 23016903 -119254541 - MER106B DNA MER1_type -1 1058 16 22 35 0 0 chr9 23017048 23017077 -119254367 + AT_rich Low_complexity Low_complexity 1 29 0 284 311 68 19 chr9 23018665 23018826 -119252618 + MIR SINE MIR 82 250 -12 1961 184 67 12 chr9 23019610 23020013 -119251431 + MER83 LTR ERV1 1 425 -23 2502 136 85 19 chr9 23021235 23021810 -119249634 - MER4B LTR ERV1 0 779 1 2361 120 11 0 chr9 23023023 23023382 -119248062 - MER57B LTR ERV1 -71 363 1 1229 237 34 3 chr9 23023809 23024134 -119247310 + L1MD3 LINE L1 7547 7881 -114 199 259 19 0 chr9 23024483 23024537 -119246907 + MIR SINE MIR 109 163 -99 1628 248 35 27 chr9 23024555 23025073 -119246371 - MLT2B3 LTR ERVL 0 520 3 2067 144 35 30 chr9 23025712 23026107 -119245337 - L1MB2 LINE L1 -2 6169 5773 2429 174 18 39 chr9 23026186 23026630 -119244814 - L1M3 LINE L1 -369 5814 5386 1781 186 28 6 chr9 23026630 23026985 -119244459 - MLT1A1 LTR MaLR 0 365 3 2429 174 18 39 chr9 23026985 23027239 -119244205 - L1M3 LINE L1 -797 5386 5128 905 166 0 0 chr9 23027338 23027501 -119243943 + L1M1 LINE L1 5497 5659 -645 2054 138 10 0 chr9 23028889 23029187 -119242257 - AluSx SINE Alu -10 302 2 349 343 73 58 chr9 23029776 23030187 -119241257 - L2 LINE L2 -36 3236 2820 1813 213 133 5 chr9 23030870 23031372 -119240072 - MLT1F1 LTR MaLR 0 595 1 2268 105 0 3 chr9 23031760 23032074 -119239370 + AluSq SINE Alu 1 313 0 27 49 0 0 chr9 23033300 23033341 -119238103 + AT_rich Low_complexity Low_complexity 1 41 0 300 268 79 31 chr9 23033940 23034067 -119237377 - L1ME LINE L1 -478 5643 5511 183 42 0 0 chr9 23034670 23034694 -119236750 + (CA)n Simple_repeat Simple_repeat 2 25 0 783 169 0 0 chr9 23035095 23035219 -119236225 + FLAM_C SINE Alu 2 125 -8 1284 132 26 0 chr9 23035582 23035809 -119235635 + L1MA1 LINE L1 5610 5842 -460 338 102 0 194 chr9 23036025 23036074 -119235370 - HUERS-P1 LTR ERV1 -1766 4497 4475 1881 155 3 39 chr9 23036074 23036383 -119235061 + AluSx SINE Alu 5 302 -10 338 102 0 194 chr9 23036383 23036431 -119235013 - HUERS-P1 LTR ERV1 -1788 4475 4419 6492 228 84 31 chr9 23036434 23036798 -119234646 - HUERS-P1 LTR ERV1 -2664 4541 4198 2634 94 16 8 chr9 23036798 23037170 -119234274 - THE1C LTR MaLR 0 375 1 6492 228 84 31 chr9 23037170 23038469 -119232975 - HUERS-P1 LTR ERV1 -3007 4198 2789 6185 148 20 14 chr9 23038465 23040223 -119231221 - HUERS-P1 LTR ERV1 -5356 1849 1 * 1342 153 18 0 chr9 23040257 23040480 -119230964 - MER50 LTR ERV1 -12 722 496 391 309 54 6 chr9 23041486 23041654 -119229790 + MIR SINE MIR 84 259 -3 282 56 0 0 chr9 23041967 23042003 -119229441 + (TA)n Simple_repeat Simple_repeat 1 36 0 24 0 0 0 chr9 23042080 23042104 -119229340 + AT_rich Low_complexity Low_complexity 1 24 0 269 309 64 67 chr9 23044189 23044487 -119226957 + L2 LINE L2 1996 2292 -1022 245 307 143 14 chr9 23044569 23044709 -119226735 + L2 LINE L2 3155 3312 -1 743 199 14 0 chr9 23044763 23044904 -119226540 + FRAM SINE Alu 1 143 -33 2169 90 0 4 chr9 23044994 23045272 -119226172 + AluSg SINE Alu 1 277 -33 217 0 61 0 chr9 23045272 23045305 -119226139 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 461 254 86 43 chr9 23046001 23046280 -119225164 + L1MC4a LINE L1 5716 6006 -1802 839 223 0 30 chr9 23049125 23049322 -119222122 + MER31B LTR ERV1 276 466 0 242 232 18 0 chr9 23050025 23050081 -119221363 + MIR SINE MIR 107 163 -99 2245 88 0 0 chr9 23051380 23051664 -119219780 - AluSc SINE Alu -25 284 1 2362 190 76 64 chr9 23051667 23052523 -119218921 + MER106B DNA MER1_type 151 1016 -43 288 127 14 28 chr9 23053533 23053604 -119217840 + (TCTA)n Simple_repeat Simple_repeat 4 73 0 21 0 0 0 chr9 23053607 23053628 -119217816 + AT_rich Low_complexity Low_complexity 1 21 0 309 369 130 22 chr9 23054061 23054614 -119216830 - L2 LINE L2 -978 2336 1724 33 80 0 0 chr9 23054687 23054762 -119216682 + AT_rich Low_complexity Low_complexity 1 75 0 241 232 54 0 chr9 23055031 23055087 -119216357 + MIR SINE MIR 84 142 -66 334 231 105 42 chr9 23055508 23055651 -119215793 - L1M LINE L1 -752 5418 5267 1189 150 16 0 chr9 23055751 23055944 -119215500 - AluSg/x SINE Alu -11 301 106 1662 135 108 27 chr9 23056260 23056594 -119214850 + MER46B DNA MER2_type 1 236 0 24 53 0 0 chr9 23056888 23056926 -119214518 + AT_rich Low_complexity Low_complexity 1 38 0 2107 88 56 0 chr9 23059197 23059482 -119211962 - AluY SINE Alu -7 304 4 6760 112 30 17 chr9 23059914 23060971 -119210473 + MER11C LTR ERVK 1 1071 0 1407 137 31 8 chr9 23061341 23061596 -119209848 - L1MA4A LINE L1 0 6303 6043 191 289 0 0 chr9 23061884 23061936 -119209508 - MIR SINE MIR -18 244 193 347 368 0 0 chr9 23061936 23062042 -119209402 - L1M2c LINE L1 -5612 1177 1072 * 6111 150 37 10 chr9 23062037 23064100 -119207344 + L1MA5A LINE L1 4166 6292 -5 23 68 0 0 chr9 23065675 23065719 -119205725 + AT_rich Low_complexity Low_complexity 1 44 0 13833 113 5 13 chr9 23065856 23067986 -119203458 + L1P LINE L1 1341 3454 -2692 3191 64 0 5 chr9 23067971 23068379 -119203065 - L1P LINE L1 -1179 4967 4562 * 4395 187 13 6 chr9 23068480 23069336 -119202108 - L1P LINE L1 -1957 4189 3328 3202 247 47 7 chr9 23069332 23070191 -119201253 - L1P LINE L1 -3690 2456 1564 * 3245 23 0 0 chr9 23070198 23070596 -119200848 + L1P LINE L1 2805 3202 -2944 908 276 24 9 chr9 23070696 23071036 -119200408 - L1 LINE L1 -923 5223 4879 22 35 0 0 chr9 23071141 23071170 -119200274 + AT_rich Low_complexity Low_complexity 1 29 0 1289 108 54 58 chr9 23072266 23072484 -119198960 - L1MA5A LINE L1 0 6297 6079 1924 132 20 54 chr9 23072484 23072833 -119198611 - MER1B DNA MER1_type 0 337 1 1289 108 54 58 chr9 23072833 23072892 -119198552 - L1MA5A LINE L1 -218 6079 6021 228 182 91 0 chr9 23072907 23072951 -119198493 + MER75 DNA T2_type 453 500 -4 2100 143 48 11 chr9 23072955 23073334 -119198110 - L1MA5A LINE L1 -266 6031 5639 424 103 0 0 chr9 23073330 23073388 -119198056 - L1MA1 LINE L1 -447 5855 5798 * 2216 200 22 19 chr9 23073389 23073924 -119197520 - L1 LINE L1 -1444 4702 4166 469 169 12 0 chr9 23073931 23074014 -119197430 - L1 LINE L1 -1897 4249 4166 325 269 47 107 chr9 23074009 23074158 -119197286 + L1M2c LINE L1 1072 1211 -5578 * 5540 92 7 3 chr9 23074493 23075265 -119196179 + L1PA14 LINE L1 5383 6157 -4 184 331 33 26 chr9 23075378 23075529 -119195915 - L2 LINE L2 -978 2336 2185 2088 142 7 0 chr9 23076682 23076812 -119194632 + AluSx SINE Alu 1 129 -183 207 0 0 0 chr9 23076812 23076835 -119194609 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2088 142 7 0 chr9 23076835 23077014 -119194430 + AluSx SINE Alu 129 312 0 647 243 27 36 chr9 23077114 23077336 -119194108 + L1M4 LINE L1 5057 5276 -870 472 72 14 0 chr9 23077336 23077405 -119194039 + L1MA3 LINE L1 5778 5847 -458 4348 230 94 87 chr9 23077516 23078675 -119192769 + L1MD3 LINE L1 6126 7419 -576 519 263 0 0 chr9 23078675 23078793 -119192651 + MLT1F1 LTR MaLR 8 125 -442 4348 230 94 87 chr9 23078793 23079360 -119192084 + L1MD3 LINE L1 7419 7981 -14 1357 232 146 19 chr9 23079533 23079943 -119191501 + MER31B LTR ERV1 5 466 0 192 314 43 0 chr9 23080720 23080790 -119190654 + L2 LINE L2 3224 3296 -17 3196 204 64 32 chr9 23081672 23082693 -119188751 + MER106B DNA MER1_type 3 1055 -4 21 57 0 0 chr9 23083674 23083709 -119187735 + AT_rich Low_complexity Low_complexity 1 35 0 200 217 49 84 chr9 23083973 23084116 -119187328 - L2 LINE L2 -65 3248 3111 24 0 0 0 chr9 23086821 23086845 -119184599 + AT_rich Low_complexity Low_complexity 1 24 0 517 31 0 0 chr9 23086845 23086909 -119184535 - L1PA4 LINE L1 -3 6152 6089 207 0 0 0 chr9 23087110 23087133 -119184311 + (A)n Simple_repeat Simple_repeat 1 23 0 184 329 110 12 chr9 23087153 23087235 -119184209 + L2 LINE L2 1336 1425 -1889 296 266 47 0 chr9 23087486 23087655 -119183789 + (TA)n Simple_repeat Simple_repeat 2 178 0 212 286 24 24 chr9 23087616 23087784 -119183660 + (CATATA)n Simple_repeat Simple_repeat 5 172 0 * 272 209 46 13 chr9 23087788 23087795 -119183649 + (TA)n Simple_repeat Simple_repeat 1 6 -611 1581 183 21 3 chr9 23087795 23088085 -119183359 + AluJo SINE Alu 1 295 -17 272 209 46 13 chr9 23088085 23088386 -119183058 + (TA)n Simple_repeat Simple_repeat 6 617 0 2152 129 0 0 chr9 23089273 23089601 -119181843 - AluSc SINE Alu 0 309 1 5504 160 30 59 chr9 23090766 23092057 -119179387 - L1MA5A LINE L1 0 6297 4971 2195 85 7 0 chr9 23092057 23092360 -119179084 + AluY SINE Alu 1 305 0 5504 160 30 59 chr9 23092360 23092534 -119178910 - L1MA5A LINE L1 -1326 4971 4794 7630 24 2 0 chr9 23092534 23093581 -119177863 + L1PA3 LINE L1 5107 6155 0 5504 160 30 59 chr9 23093581 23094296 -119177148 - L1MA5A LINE L1 -1503 4794 4185 477 254 11 2 chr9 23094287 23094415 -119177029 + L1M2c LINE L1 813 1256 -5533 * 192 286 0 0 chr9 23094415 23094471 -119176973 + MIR SINE MIR 193 248 -14 1256 148 25 12 chr9 23094759 23095002 -119176442 + L1MA4A LINE L1 6052 6297 -6 250 309 36 22 chr9 23096560 23096699 -119174745 - L2 LINE L2 -978 2336 2196 1048 174 20 48 chr9 23097233 23097455 -119173989 + L1MC/D LINE L1 5044 5271 -964 3214 106 27 2 chr9 23097455 23097966 -119173478 + L1MA3 LINE L1 5782 6305 0 225 0 0 0 chr9 23097969 23097994 -119173450 + (CA)n Simple_repeat Simple_repeat 2 26 0 195 42 0 0 chr9 23097993 23098017 -119173427 + (TA)n Simple_repeat Simple_repeat 2 25 0 * 1048 174 20 48 chr9 23097994 23098239 -119173205 + L1MC/D LINE L1 5273 5492 -743 2850 204 80 26 chr9 23099020 23099814 -119171630 + MER106B DNA MER1_type 21 876 -183 2237 129 0 0 chr9 23099814 23100124 -119171320 - AluSg SINE Alu 0 310 1 2850 204 80 26 chr9 23100124 23100274 -119171170 + MER106B DNA MER1_type 876 1016 -43 197 143 0 20 chr9 23101299 23101348 -119170096 + (TTTA)n Simple_repeat Simple_repeat 1 48 0 16159 27 0 0 chr9 23102433 23105116 -119166328 + L1PA4 LINE L1 3471 6152 -3 33 0 0 0 chr9 23105116 23105149 -119166295 + AT_rich Low_complexity Low_complexity 1 33 0 4989 198 21 8 chr9 23105288 23106319 -119165125 - L1PA13 LINE L1 -4583 2204 1160 1438 222 36 0 chr9 23108001 23108335 -119163109 + L1MD3 LINE L1 7551 7896 -99 1720 219 62 31 chr9 23108901 23109381 -119162063 - MLT2B3 LTR ERVL -57 497 3 1818 170 38 30 chr9 23110007 23110402 -119161042 - L1MB2 LINE L1 -2 6169 5772 1695 181 16 106 chr9 23110480 23110959 -119160485 - L1M3 LINE L1 -354 5814 5390 1743 188 28 6 chr9 23110959 23111311 -119160133 - MLT1A1 LTR MaLR -3 362 3 1695 181 16 106 chr9 23111311 23111389 -119160055 - L1M3 LINE L1 -778 5390 5307 6811 58 0 2 chr9 23111394 23112557 -119158887 - L1PA3 LINE L1 -1 6154 4978 1768 63 8 0 chr9 23112559 23112797 -119158647 + L1P LINE L1 4090 4329 -1817 230 226 129 54 chr9 23112921 23113014 -119158430 - L2 LINE L2 -2498 816 717 237 271 16 33 chr9 23114373 23114495 -119156949 + (CATATA)n Simple_repeat Simple_repeat 1 120 0 235 188 0 31 chr9 23114998 23115062 -119156382 + A-rich Low_complexity Low_complexity 2 63 0 510 268 139 19 chr9 23116198 23116407 -119155037 - MIR SINE MIR -25 237 4 246 231 161 39 chr9 23116427 23116557 -119154887 - MIR SINE MIR -77 185 40 770 180 40 0 chr9 23118421 23118568 -119152876 + MLT1B LTR MaLR 2 154 -236 447 225 100 30 chr9 23118568 23118807 -119152637 + MSTB2 LTR MaLR 1 269 -188 517 68 0 0 chr9 23118840 23118913 -119152531 + MSTB2 LTR MaLR 383 455 -2 1140 195 25 4 chr9 23118915 23119151 -119152293 + MLT1B LTR MaLR 150 390 0 286 252 198 9 chr9 23119431 23119542 -119151902 - MER5B DNA MER1_type -42 136 5 2435 82 0 0 chr9 23119565 23119868 -119151576 - AluY SINE Alu -8 303 1 914 185 189 37 chr9 23119901 23120198 -119151246 + MLT1D LTR MaLR 1 342 -163 990 168 11 1 chr9 23120199 23120381 -119151063 - MLT1B LTR MaLR -51 339 159 660 112 0 0 chr9 23120385 23120483 -119150961 - MSTB2 LTR MaLR -2 455 358 623 167 69 123 chr9 23120478 23120619 -119150825 + MLT1D LTR MaLR 308 436 -69 * 1820 155 7 30 chr9 23120619 23120923 -119150521 - AluJb SINE Alu -15 297 1 623 167 69 123 chr9 23120923 23120985 -119150459 + MLT1D LTR MaLR 436 500 -5 818 199 74 0 chr9 23121047 23121223 -119150221 - MER5A DNA MER1_type 0 189 1 426 291 57 6 chr9 23121597 23121755 -119149689 + MER20 DNA MER1_type 28 193 -26 1967 143 0 0 chr9 23122058 23122344 -119149100 - AluSx SINE Alu -26 286 1 679 272 154 35 chr9 23122861 23123342 -119148102 + L2 LINE L2 2423 2960 -354 1636 159 73 9 chr9 23123363 23123678 -119147766 - MLT1A1 LTR MaLR -6 359 25 386 308 13 63 chr9 23124361 23124520 -119146924 + MIR3 SINE MIR 49 199 -9 468 0 0 0 chr9 23126188 23126240 -119145204 + (TG)n Simple_repeat Simple_repeat 2 53 0 21 57 0 0 chr9 23126359 23126394 -119145050 + GC_rich Low_complexity Low_complexity 1 35 0 242 296 71 10 chr9 23126785 23126883 -119144561 - MIR SINE MIR 0 262 159 26 0 0 0 chr9 23127033 23127059 -119144385 + GC_rich Low_complexity Low_complexity 1 26 0 624 198 19 37 chr9 23128293 23128455 -119142989 - MER58 DNA MER1_type -2254 166 8 307 217 17 96 chr9 23128502 23128617 -119142827 - LTR37B LTR ERV1 -362 106 1 239 241 96 12 chr9 23131365 23131448 -119139996 - MIR SINE MIR -71 191 102 259 343 67 22 chr9 23131697 23131831 -119139613 - MIR SINE MIR -108 154 15 2826 103 14 52 chr9 23131848 23132345 -119139099 + MER39B LTR ERV1 1 478 -175 1001 84 11 13 chr9 23132374 23132667 -119138777 + MER4A LTR ERV1 30 389 -275 542 121 0 11 chr9 23132666 23132757 -119138687 + MER4A LTR ERV1 575 664 0 * 621 118 20 0 chr9 23132757 23132859 -119138585 + MER39B LTR ERV1 474 577 -76 522 167 7 90 chr9 23133760 23133904 -119137540 - MER94 DNA DNA -2 132 1 203 306 0 42 chr9 23135127 23135199 -119136245 - L2 LINE L2 -2070 1244 1176 254 333 102 61 chr9 23135229 23136049 -119135395 - L2 LINE L2 -2239 1075 222 5041 160 31 23 chr9 23136141 23137634 -119133810 - L1MA7 LINE L1 -24 6267 4767 320 160 40 0 chr9 23137659 23137734 -119133710 - L1MA5 LINE L1 0 6300 6223 1841 156 43 109 chr9 23137734 23138240 -119133204 - MER21A LTR ERV1 0 931 459 2372 83 0 3 chr9 23138586 23138886 -119132558 + AluSp SINE Alu 1 299 -14 248 182 18 18 chr9 23138978 23139033 -119132411 + CT-rich Low_complexity Low_complexity 4 58 0 273 98 0 0 chr9 23139236 23139277 -119132167 + (TGAA)n Simple_repeat Simple_repeat 4 44 0 180 0 0 0 chr9 23140810 23140830 -119130614 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 360 187 193 0 chr9 23140922 23141042 -119130402 + MIR SINE MIR 114 261 -1 239 335 44 112 chr9 23141056 23141486 -119129958 - L2 LINE L2 -38 3234 2834 521 284 0 0 chr9 23141580 23141725 -119129719 - FLAM_A SINE Alu 0 145 1 278 125 0 0 chr9 23142852 23142892 -119128552 - MLT2D LTR ERVL -8 389 350 278 278 0 46 chr9 23142893 23143001 -119128443 + (TATATG)n Simple_repeat Simple_repeat 2 104 0 1747 161 25 6 chr9 23143003 23143326 -119128118 - MLT2D LTR ERVL -84 330 2 209 224 82 0 chr9 23143439 23143488 -119127956 - L2 LINE L2 -4 3268 3216 216 0 0 0 chr9 23145346 23145370 -119126074 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 244 286 36 0 chr9 23145579 23145663 -119125781 - MIR SINE MIR -48 214 128 255 263 0 175 chr9 23145770 23145930 -119125514 - L2 LINE L2 -76 3196 3065 25 31 0 0 chr9 23146442 23146474 -119124970 + AT_rich Low_complexity Low_complexity 1 32 0 25 65 0 0 chr9 23146522 23146568 -119124876 + AT_rich Low_complexity Low_complexity 1 46 0 902 275 9 9 chr9 23147975 23148204 -119123240 + MIR SINE MIR 34 262 0 5810 31 0 0 chr9 23148251 23148928 -119122516 - L1PA5 LINE L1 -13 6141 5465 1609 210 7 0 chr9 23149555 23149855 -119121589 - AluJo SINE Alu -8 304 3 3664 286 94 78 chr9 23151122 23153503 -119117941 + L2 LINE L2 67 2484 -830 806 98 0 8 chr9 23153526 23153649 -119117795 + (TTCC)n Simple_repeat Simple_repeat 3 124 0 1433 214 0 11 chr9 23153654 23153930 -119117514 - AluJb SINE Alu -39 273 1 1019 318 93 7 chr9 23153939 23154360 -119117084 + L2 LINE L2 2490 2946 -368 331 271 164 0 chr9 23154486 23154608 -119116836 + L2 LINE L2 3172 3313 0 358 266 122 47 chr9 23154980 23155194 -119116250 + L1ME4a LINE L1 5699 5928 -193 31 58 0 0 chr9 23155329 23155381 -119116063 + AT_rich Low_complexity Low_complexity 1 52 0 25 51 0 0 chr9 23155462 23155501 -119115943 + AT_rich Low_complexity Low_complexity 1 39 0 293 253 184 0 chr9 23156125 23156212 -119115232 - L2 LINE L2 -1 3271 3169 340 316 143 0 chr9 23156722 23156890 -119114554 - MIR SINE MIR -25 237 46 255 211 128 20 chr9 23157542 23157652 -119113792 + MLT1E1 LTR MaLR 402 641 -13 2218 118 42 91 chr9 23158676 23158924 -119112520 - MSTA LTR MaLR -1 427 168 1885 105 3 82 chr9 23158924 23159229 -119112215 - AluSx SINE Alu -31 281 1 2218 118 42 91 chr9 23159229 23159241 -119112203 - MSTA LTR MaLR -260 168 157 1348 113 214 23 chr9 23159241 23159498 -119111946 - AluSg1 SINE Alu -3 306 1 2218 118 42 91 chr9 23159498 23159685 -119111759 - MSTA LTR MaLR -271 157 1 314 292 92 79 chr9 23159867 23160013 -119111431 + MIR SINE MIR 20 172 -90 2041 174 36 71 chr9 23160013 23160536 -119110908 - MLT1D LTR MaLR 0 505 1 314 292 92 79 chr9 23160536 23160629 -119110815 + MIR SINE MIR 172 262 0 3214 255 98 34 chr9 23161270 23162151 -119109293 + MSTD-int LTR MaLR 794 1730 -5 1754 180 83 21 chr9 23162156 23162529 -119108915 + MSTD LTR MaLR 1 396 0 470 291 148 14 chr9 23162598 23162808 -119108636 + MIR SINE MIR 13 250 -12 407 319 65 29 chr9 23163149 23163659 -119107785 - L1ME LINE L1 -4981 1089 557 319 250 50 0 chr9 23163662 23163762 -119107682 - MER58C DNA MER1_type -8 207 103 215 229 16 0 chr9 23163776 23163837 -119107607 + CT-rich Low_complexity Low_complexity 3 64 0 334 217 0 0 chr9 23163839 23163899 -119107545 - MER58C DNA MER1_type -117 98 39 512 303 11 11 chr9 23164488 23164663 -119106781 - L1ME LINE L1 -5893 177 3 329 360 98 39 chr9 23164725 23165114 -119106330 - L2 LINE L2 -547 2767 2356 1969 147 3 3 chr9 23166068 23166367 -119105077 - AluJb SINE Alu -12 300 2 289 334 135 55 chr9 23166448 23166849 -119104595 + L2 LINE L2 2470 2902 -412 180 299 312 0 chr9 23167107 23167184 -119104260 + L2 LINE L2 3197 3297 -16 455 118 13 0 chr9 23168865 23168941 -119102503 + (CATATA)n Simple_repeat Simple_repeat 1 77 0 184 80 93 13 chr9 23169025 23169100 -119102344 + (TA)n Simple_repeat Simple_repeat 2 82 0 410 218 6 0 chr9 23169125 23169281 -119102163 + (TA)n Simple_repeat Simple_repeat 1 157 0 791 170 29 136 chr9 23170199 23170413 -119101031 - MLT1A2 LTR MaLR -5 377 184 2296 107 10 0 chr9 23170759 23171067 -119100377 - AluSx SINE Alu -1 311 1 1043 133 53 142 chr9 23172274 23172613 -119098831 - MER33 DNA MER1_type 0 324 16 234 290 16 0 chr9 23172766 23172828 -119098616 - L2 LINE L2 -12 3260 3198 244 321 87 82 chr9 23173218 23173402 -119098042 - L2 LINE L2 -224 3048 2864 285 29 0 0 chr9 23173402 23173436 -119098008 + (TG)n Simple_repeat Simple_repeat 2 35 0 2091 136 131 13 chr9 23174582 23174965 -119096479 + MSTA LTR MaLR 1 428 0 1597 193 28 128 chr9 23176752 23177323 -119094121 + MER67D LTR ERV1 1 514 0 764 185 93 44 chr9 23177511 23177716 -119093728 + L2 LINE L2 3099 3313 0 255 343 29 58 chr9 23178361 23178533 -119092911 - MIR SINE MIR -50 212 46 881 272 0 44 chr9 23178749 23178999 -119092445 + MIR SINE MIR 21 259 -3 241 291 117 29 chr9 23179714 23179817 -119091627 + LTR16A LTR ERVL 1 112 -338 328 313 121 23 chr9 23179902 23180167 -119091277 + LTR16A LTR ERVL 160 450 0 286 338 125 0 chr9 23180472 23180608 -119090836 - MIR SINE MIR -29 233 81 289 305 205 26 chr9 23180696 23180886 -119090558 - MIR SINE MIR -37 225 2 233 378 32 13 chr9 23181334 23181490 -119089954 + L2 LINE L2 2892 3050 -222 321 299 0 13 chr9 23181856 23181933 -119089511 + L2 LINE L2 3166 3241 -31 1896 188 45 47 chr9 23182789 23183242 -119088202 + L1MB7 LINE L1 5685 6138 -46 1867 151 9 103 chr9 23183242 23183667 -119087777 - MLT1B LTR MaLR -2 388 4 1896 188 45 47 chr9 23183667 23183702 -119087742 + L1MB7 LINE L1 6138 6172 -12 792 229 27 6 chr9 23184601 23184784 -119086660 - MER5A DNA MER1_type -2 187 1 21 0 0 0 chr9 23185301 23185322 -119086122 + AT_rich Low_complexity Low_complexity 1 21 0 290 252 7 116 chr9 23185441 23185588 -119085856 - MIR SINE MIR -49 213 83 942 278 49 35 chr9 23186417 23187060 -119084384 + L2 LINE L2 2431 3309 -4 735 277 84 14 chr9 23188891 23189262 -119082182 + ERVL LTR ERVL 4184 4616 -1148 517 279 95 0 chr9 23189285 23189432 -119082012 + MER97b DNA MER1_type? 22 182 -871 1040 222 31 111 chr9 23190241 23190629 -119080815 + LTR16A1 LTR ERVL 101 457 0 24 53 0 0 chr9 23190692 23190730 -119080714 + AT_rich Low_complexity Low_complexity 1 38 0 1732 183 3 3 chr9 23190960 23191261 -119080183 + AluJb SINE Alu 1 301 -11 28 0 0 0 chr9 23191896 23191924 -119079520 + AT_rich Low_complexity Low_complexity 1 28 0 231 132 26 0 chr9 23192642 23192680 -119078764 - MER5C DNA MER1_type 0 324 286 3481 127 30 24 chr9 23192708 23193257 -119078187 + LTR49 LTR ERV1 1 556 -39 2253 117 15 6 chr9 23193257 23193590 -119077854 + MER1B DNA MER1_type 1 336 -1 3481 127 30 24 chr9 23193590 23193631 -119077813 + LTR49 LTR ERV1 556 595 0 672 246 130 5 chr9 23193637 23193844 -119077600 - MER5C DNA MER1_type -78 246 14 420 228 54 0 chr9 23195408 23195500 -119075944 - MER5A DNA MER1_type -84 105 9 383 294 11 71 chr9 23196485 23196669 -119074775 - MLT1J LTR MaLR -314 197 25 6108 28 0 0 chr9 23196967 23197678 -119073766 + L1PA5 LINE L1 5433 6143 -11 189 0 0 0 chr9 23197679 23197700 -119073744 + (TA)n Simple_repeat Simple_repeat 2 22 0 208 225 0 0 chr9 23198253 23198293 -119073151 + (TCCA)n Simple_repeat Simple_repeat 4 43 0 501 287 112 56 chr9 23198892 23199680 -119071764 - L1MDa LINE L1 -4445 2496 1665 265 298 0 10 chr9 23199695 23199799 -119071645 - L1MDa LINE L1 -4955 1468 1366 1967 81 96 0 chr9 23201002 23201273 -119070171 - AluY SINE Alu -14 297 1 452 145 0 24 chr9 23201273 23201356 -119070088 - AluYb8 SINE Alu -184 134 54 252 399 28 21 chr9 23202520 23202663 -119068781 - MIR SINE MIR -100 162 19 722 281 20 5 chr9 23203316 23203512 -119067932 + MIR SINE MIR 1 199 -63 234 256 50 109 chr9 23203532 23203770 -119067674 + L1ME3A LINE L1 5942 6165 -5 261 227 18 18 chr9 23203848 23203958 -119067486 + (TA)n Simple_repeat Simple_repeat 2 111 0 7257 149 13 10 chr9 23204994 23206271 -119065173 - L1PA10 LINE L1 -3198 2948 1668 * 11571 108 16 104 chr9 23206259 23208583 -119062861 + L1PA10 LINE L1 2923 5042 -1104 4842 91 6 1 chr9 23208583 23209238 -119062206 + L1PA7 LINE L1 5494 6154 0 5679 109 37 9 chr9 23209238 23210347 -119061097 + L1PA10 LINE L1 5031 6164 -4 27 62 0 0 chr9 23211038 23211086 -119060358 + AT_rich Low_complexity Low_complexity 1 48 0 3688 123 25 13 chr9 23211225 23211820 -119059624 + LTR43 LTR ERV1 1 602 0 25 75 0 0 chr9 23212790 23212843 -119058601 + AT_rich Low_complexity Low_complexity 1 53 0 180 77 0 0 chr9 23213820 23213846 -119057598 + (TG)n Simple_repeat Simple_repeat 1 26 0 2309 228 133 19 chr9 23213869 23214795 -119056649 - MER106B DNA MER1_type -26 1033 3 182 225 169 42 chr9 23215098 23215169 -119056275 + L2 LINE L2 3225 3304 -9 1894 141 41 0 chr9 23216117 23216408 -119055036 - AluSx SINE Alu -9 303 1 237 272 78 0 chr9 23216757 23216860 -119054584 + L1 LINE L1 2947 3057 -3089 1606 86 14 265 chr9 23216860 23217346 -119054098 + THE1B LTR MaLR 1 364 0 5862 215 37 38 chr9 23217348 23218516 -119052928 + L1 LINE L1 3055 4223 -1923 315 0 0 0 chr9 23218516 23218551 -119052893 + (CA)n Simple_repeat Simple_repeat 2 36 0 5862 215 37 38 chr9 23218551 23219137 -119052307 + L1 LINE L1 4223 4808 -1338 1953 125 28 0 chr9 23219268 23219434 -119052010 - AluSx SINE Alu -15 297 118 537 30 0 0 chr9 23219434 23219501 -119051943 + (TG)n Simple_repeat Simple_repeat 2 68 0 1953 125 28 0 chr9 23219501 23219621 -119051823 - AluSx SINE Alu -194 118 3 233 245 0 85 chr9 23221171 23221227 -119050217 - MIR SINE MIR 0 262 218 1704 173 32 0 chr9 23221227 23221511 -119049933 - AluJb SINE Alu -19 293 1 233 245 0 85 chr9 23221511 23221560 -119049884 - MIR SINE MIR -44 218 166 1953 124 43 0 chr9 23221908 23222190 -119049254 - AluSx SINE Alu -8 304 11 1792 124 0 50 chr9 23222496 23222778 -119048666 + AluSx SINE Alu 30 297 -15 529 135 154 10 chr9 23222980 23223084 -119048360 + MSTB1 LTR MaLR 286 404 -28 1258 230 28 12 chr9 23223090 23223416 -119048028 - MER87 LTR ERV1 0 541 211 2928 196 51 7 chr9 23223733 23224068 -119047376 - MER6 DNA MER2_type -291 574 204 366 42 0 0 chr9 23224068 23224116 -119047328 + (CA)n Simple_repeat Simple_repeat 2 49 0 2928 196 51 7 chr9 23224116 23224326 -119047118 - MER6 DNA MER2_type -661 204 5 22 80 0 0 chr9 23225415 23225465 -119045979 + AT_rich Low_complexity Low_complexity 1 50 0 864 230 0 89 chr9 23226433 23226681 -119044763 - MER39-int LTR ERV1 -4196 2135 1910 310 62 188 0 chr9 23226681 23226729 -119044715 + MER31A LTR ERV1 247 303 -182 1802 186 33 79 chr9 23226793 23227314 -119044130 - MER39-int LTR ERV1 -4462 1869 1373 281 205 39 0 chr9 23227449 23227527 -119043917 - MER39-int LTR ERV1 -4949 1382 1302 256 312 36 36 chr9 23227536 23227674 -119043770 - MER39-int LTR ERV1 -6115 216 79 2938 164 103 18 chr9 23227755 23228370 -119043074 - MER39 LTR ERV1 0 707 1 1672 149 64 10 chr9 23228679 23228974 -119042470 - AluSq SINE Alu 0 313 3 316 178 56 56 chr9 23229048 23229138 -119042306 + L1MC4 LINE L1 6614 6703 -1339 183 156 0 0 chr9 23229138 23229170 -119042274 + (TA)n Simple_repeat Simple_repeat 2 33 0 345 47 0 0 chr9 23229170 23229213 -119042231 + (CA)n Simple_repeat Simple_repeat 2 44 0 204 322 180 19 chr9 23229293 23229504 -119041940 + L2 LINE L2 2067 2311 -1003 3152 197 61 53 chr9 23230932 23231978 -119039466 - MER106B DNA MER1_type -2 1057 3 699 128 0 0 chr9 23232263 23232365 -119039079 + AluS SINE Alu 1 102 -211 1824 127 45 38 chr9 23232757 23233048 -119038396 + AluSp SINE Alu 1 293 -20 217 335 225 5 chr9 23233158 23233349 -119038095 - MIR SINE MIR -11 251 19 1674 217 33 62 chr9 23234035 23234127 -119037317 - MER31B LTR ERV1 0 466 373 2122 136 102 8 chr9 23234127 23234518 -119036926 - MSTA LTR MaLR 0 428 1 1674 217 33 62 chr9 23234518 23234905 -119036539 - MER31B LTR ERV1 -93 373 1 25 0 0 0 chr9 23235012 23235037 -119036407 + AT_rich Low_complexity Low_complexity 1 25 0 4078 221 89 113 chr9 23235077 23235239 -119036205 - L1MD3 LINE L1 -1 7981 7817 2047 117 10 7 chr9 23235239 23235546 -119035898 + AluSc SINE Alu 1 308 -1 4078 221 89 113 chr9 23235546 23236104 -119035340 - L1MD3 LINE L1 -165 7817 7247 7576 29 2 0 chr9 23236104 23237700 -119033744 - L1PA3 LINE L1 0 6155 4558 4078 221 89 113 chr9 23237700 23238693 -119032751 - L1MD3 LINE L1 -735 7247 6126 5169 177 78 31 chr9 23238960 23240135 -119031309 + L1M4 LINE L1 19 1248 -5136 1863 254 73 8 chr9 23240500 23241294 -119030150 + L1M4 LINE L1 4379 5224 -1158 1004 208 85 142 chr9 23241440 23242229 -119029215 - MER39-int LTR ERV1 -4196 2135 1392 300 169 56 0 chr9 23242413 23242484 -119028960 - MER39-int LTR ERV1 -4961 1370 1296 * 318 246 93 71 chr9 23242466 23242649 -119028795 - MER39-int LTR ERV1 -6081 250 64 3260 170 64 24 chr9 23242704 23243345 -119028099 - MER39 LTR ERV1 0 707 2 22 35 0 0 chr9 23243957 23243986 -119027458 + AT_rich Low_complexity Low_complexity 1 29 0 302 281 116 30 chr9 23245225 23245389 -119026055 - MIR SINE MIR -3 259 82 21 36 0 0 chr9 23246015 23246043 -119025401 + AT_rich Low_complexity Low_complexity 1 28 0 576 163 0 54 chr9 23246335 23246464 -119024980 - FRAM SINE Alu -1 175 54 269 307 158 13 chr9 23246534 23246762 -119024682 + L2 LINE L2 2076 2336 -978 38 22 0 0 chr9 23247239 23247284 -119024160 + AT_rich Low_complexity Low_complexity 1 45 0 422 225 118 57 chr9 23248252 23248532 -119022912 - MER106B DNA MER1_type -2 1057 761 1543 185 0 0 chr9 23248542 23248829 -119022615 - L1MA3 LINE L1 -6 6299 6013 1827 102 12 0 chr9 23248829 23249084 -119022360 + L1MA2 LINE L1 5616 5873 -431 1627 196 16 68 chr9 23249104 23249544 -119021900 - L1 LINE L1 -2298 5267 4851 584 218 24 0 chr9 23249648 23249813 -119021631 - L1 LINE L1 -2722 4843 4675 2750 173 24 40 chr9 23249816 23250412 -119021032 - L1 LINE L1 -3345 4220 3629 1869 159 0 17 chr9 23250412 23250731 -119020713 - AluSx SINE Alu 0 314 1 2750 173 24 40 chr9 23250731 23251226 -119020218 - L1 LINE L1 -3936 3629 3128 4920 223 32 26 chr9 23252038 23253427 -119018017 + L1 LINE L1 2897 4293 -1853 201 74 0 0 chr9 23253852 23253879 -119017565 + (TG)n Simple_repeat Simple_repeat 2 28 0 206 256 13 0 chr9 23254182 23254260 -119017184 + (TA)n Simple_repeat Simple_repeat 1 79 0 2238 155 56 12 chr9 23254389 23254803 -119016641 - Tigger2a DNA MER2_type -1 433 2 655 64 11 0 chr9 23256191 23256285 -119015159 + AluSg/x SINE Alu 194 288 -22 503 278 119 6 chr9 23256289 23256465 -119014979 + MIR SINE MIR 29 224 -38 375 224 59 110 chr9 23256468 23256687 -119014757 + L1ME3A LINE L1 5944 6151 -19 952 186 0 40 chr9 23256687 23256864 -119014580 - FRAM SINE Alu -7 169 1 560 154 0 0 chr9 23260592 23260683 -119010761 - FRAM SINE Alu -37 139 49 2262 105 3 6 chr9 23262245 23262558 -119008886 - AluSx SINE Alu 0 312 1 204 349 28 9 chr9 23262738 23262847 -119008597 - L2 LINE L2 -1 3271 3161 192 323 65 40 chr9 23262961 23263085 -119008359 + MIR SINE MIR 70 196 -66 2478 99 22 17 chr9 23263130 23263492 -119007952 + THE1B LTR MaLR 1 364 0 1791 193 3 9 chr9 23263709 23264046 -119007398 - MER4D LTR ERV1 -22 881 547 405 254 0 23 chr9 23264044 23264166 -119007278 - MER4E LTR ERV1 -588 284 59 * 1394 162 49 4 chr9 23264155 23264420 -119007024 - MER49 LTR ERV1 -643 280 4 246 230 24 9 chr9 23264433 23264651 -119006793 + (TA)n Simple_repeat Simple_repeat 1 221 0 353 128 39 69 chr9 23264659 23264761 -119006683 + MER96B DNA MER1_type? 79 177 -240 266 317 64 40 chr9 23266698 23266888 -119004556 - MLT1J2 LTR MaLR -2 448 263 282 268 42 0 chr9 23269150 23269221 -119002223 + L2 LINE L2 3223 3296 -17 1734 201 41 27 chr9 23269415 23269968 -119001476 - MLT2A2 LTR ERVL 0 554 1 2532 213 57 57 chr9 23270659 23271715 -118999729 + MER106B DNA MER1_type 3 1058 -1 209 217 0 0 chr9 23272676 23272722 -118998722 + (TTTA)n Simple_repeat Simple_repeat 4 49 0 21 82 0 0 chr9 23272820 23272869 -118998575 + AT_rich Low_complexity Low_complexity 1 49 0 267 338 168 20 chr9 23273212 23273653 -118997791 - L2 LINE L2 -992 2322 1817 43 64 0 0 chr9 23273786 23273864 -118997580 + AT_rich Low_complexity Low_complexity 1 78 0 203 299 124 10 chr9 23274501 23274598 -118996846 + MIR SINE MIR 117 224 -38 1990 108 11 14 chr9 23276015 23276301 -118995143 + THE1A LTR MaLR 71 355 0 3624 209 10 10 chr9 23276301 23277005 -118994439 - L1M1 LINE L1 -6847 718 15 199 54 54 0 chr9 23277699 23277736 -118993708 + A-rich Low_complexity Low_complexity 2 40 0 1454 266 28 30 chr9 23278801 23279233 -118992211 + LTR47B LTR ERVL 11 441 -2 2072 134 13 0 chr9 23281145 23281450 -118989994 + AluSc SINE Alu 1 309 0 277 300 50 40 chr9 23283954 23284154 -118987290 - L2 LINE L2 0 3313 3112 457 361 123 11 chr9 23284234 23284780 -118986664 - L2 LINE L2 -986 2328 1722 553 180 51 73 chr9 23284866 23285044 -118986400 - L1MA9 LINE L1 -9 6303 6130 6524 210 42 3 chr9 23285046 23286413 -118985031 - L1P LINE L1 -1132 5014 3586 198 0 0 0 chr9 23286413 23286435 -118985009 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 6524 210 42 3 chr9 23286435 23286525 -118984919 - L1P LINE L1 -2560 3586 3501 2016 126 51 0 chr9 23286525 23286819 -118984625 - AluSx SINE Alu -3 309 1 22727 151 10 8 chr9 23286820 23291162 -118980282 - L1P4 LINE L1 -481 5687 1335 300 27 0 0 chr9 23292108 23292145 -118979299 + (TG)n Simple_repeat Simple_repeat 1 37 0 22 80 0 0 chr9 23293823 23293873 -118977571 + AT_rich Low_complexity Low_complexity 1 50 0 2930 162 10 33 chr9 23294002 23294602 -118976842 - L1 LINE L1 -1416 4730 4145 581 211 10 0 chr9 23294576 23294680 -118976764 + L1M2c LINE L1 1072 1176 -5613 * 28 48 0 0 chr9 23294738 23294780 -118976664 + AT_rich Low_complexity Low_complexity 1 42 0 1432 134 4 11 chr9 23295048 23295310 -118976134 + L1MA4A LINE L1 6044 6303 0 3620 106 4 4 chr9 23296602 23297113 -118974331 + MER9 LTR ERVK 1 511 0 1032 173 92 40 chr9 23297534 23297795 -118973649 + MER31B LTR ERV1 104 378 -88 2191 128 94 8 chr9 23297795 23298179 -118973265 + MSTA LTR MaLR 1 417 -11 389 258 0 0 chr9 23298186 23298279 -118973165 + MER31B LTR ERV1 374 466 0 188 302 16 32 chr9 23299037 23299100 -118972344 + MIR SINE MIR 102 163 -99 182 169 46 77 chr9 23299793 23299858 -118971586 - L2 LINE L2 -1596 1718 1656 2294 219 48 16 chr9 23300034 23300597 -118970847 + MER106B DNA MER1_type 3 583 -476 2096 227 62 25 chr9 23301586 23302226 -118969218 - L1 LINE L1 -1959 4187 3524 21 36 0 0 chr9 23302245 23302273 -118969171 + AT_rich Low_complexity Low_complexity 1 28 0 906 184 64 108 chr9 23302286 23302396 -118969048 + MER106B DNA MER1_type 641 754 -305 1966 123 0 50 chr9 23302396 23302713 -118968731 - AluSg1 SINE Alu -8 301 1 906 184 64 108 chr9 23302713 23303038 -118968406 + MER106B DNA MER1_type 754 1057 -2 24 67 0 0 chr9 23303930 23303975 -118967469 + AT_rich Low_complexity Low_complexity 1 45 0 255 370 133 0 chr9 23304442 23304712 -118966732 - L2 LINE L2 -982 2332 2027 1285 121 59 4 chr9 23304714 23305078 -118966366 + MSTA LTR MaLR 1 427 -1 34 65 0 0 chr9 23305418 23305480 -118965964 + AT_rich Low_complexity Low_complexity 1 62 0 2439 73 0 6 chr9 23305969 23306282 -118965162 + AluY SINE Alu 1 311 0 242 296 129 8 chr9 23306400 23306532 -118964912 + MIR SINE MIR 82 229 -33 1129 128 0 6 chr9 23306538 23306694 -118964750 + AluSq SINE Alu 88 242 -71 369 157 11 22 chr9 23308107 23308196 -118963248 + (TA)n Simple_repeat Simple_repeat 2 89 0 25 83 0 0 chr9 23308202 23308262 -118963182 + AT_rich Low_complexity Low_complexity 1 60 0 2120 121 13 0 chr9 23308266 23308571 -118962873 + AluSx SINE Alu 3 311 -1 3372 180 21 20 chr9 23308856 23309522 -118961922 + MER39 LTR ERV1 1 707 0 272 246 23 100 chr9 23309577 23309707 -118961737 + MER39-int LTR ERV1 64 183 -6148 261 244 39 0 chr9 23309745 23309823 -118961621 + MER39-int LTR ERV1 1302 1382 -4949 1734 185 37 107 chr9 23309957 23310530 -118960914 + MER39-int LTR ERV1 1373 1905 -4426 291 123 185 0 chr9 23310575 23310640 -118960804 - MER31A LTR ERV1 -179 306 230 898 248 5 37 chr9 23310641 23310859 -118960585 + MER39-int LTR ERV1 1925 2135 -4196 2897 201 34 16 chr9 23312940 23313506 -118957938 + MER6 DNA MER2_type 1 576 -289 1243 256 32 17 chr9 23313771 23314128 -118957316 + MER87 LTR ERV1 168 547 -9 562 134 143 10 chr9 23314127 23314248 -118957196 - MSTB1 LTR MaLR -7 405 277 * 2094 156 0 0 chr9 23314765 23315073 -118956371 + AluSx SINE Alu 1 308 -4 1738 178 7 3 chr9 23315469 23315761 -118955683 + AluJb SINE Alu 1 293 -19 220 222 0 48 chr9 23315761 23315817 -118955627 + MIR SINE MIR 208 262 0 1453 165 120 23 chr9 23317719 23318028 -118953416 + MER1B DNA MER1_type 1 339 0 23 33 0 0 chr9 23319026 23319056 -118952388 + AT_rich Low_complexity Low_complexity 1 30 0 221 260 158 8 chr9 23319292 23319419 -118952025 - L2 LINE L2 -64 3249 3104 14280 51 0 0 chr9 23319917 23322489 -118948955 + L1PA6 LINE L1 3578 6153 -1 4510 248 87 15 chr9 23322494 23322857 -118948587 - L1M4 LINE L1 -1528 4618 4283 252 0 0 0 chr9 23322857 23322885 -118948559 + (TG)n Simple_repeat Simple_repeat 1 28 0 4510 248 87 15 chr9 23322885 23324157 -118947287 - L1M4 LINE L1 -1863 4283 2865 2611 153 21 0 chr9 23325579 23325997 -118945447 + MSTA LTR MaLR 1 427 -1 2263 110 54 25 chr9 23326089 23326443 -118945001 - THE1B LTR MaLR 0 364 1 1155 95 60 6 chr9 23326455 23326623 -118944821 - THE1B LTR MaLR -187 177 1 3785 227 12 5 chr9 23326623 23327641 -118943803 - L1PA15-16 LINE L1 -3753 3096 2067 1034 128 44 20 chr9 23327640 23327843 -118943601 - L1PA15-16 LINE L1 -5041 1798 1591 * 1872 155 37 3 chr9 23328482 23328778 -118942666 + AluJb SINE Alu 1 306 -6 406 285 36 31 chr9 23329733 23329926 -118941518 - L1ME3A LINE L1 -142 6028 5835 * 1251 231 169 60 chr9 23329922 23330726 -118940718 - L1ME3A LINE L1 -745 5401 4510 259 285 34 68 chr9 23330924 23331131 -118940313 + LTR52 LTR ERVL 1 200 -221 267 31 0 0 chr9 23331185 23331217 -118940227 + (A)n Simple_repeat Simple_repeat 1 32 0 28 0 0 0 chr9 23331274 23331302 -118940142 + AT_rich Low_complexity Low_complexity 1 28 0 324 180 33 0 chr9 23331518 23331579 -118939865 - MER5B DNA MER1_type 0 178 116 387 303 134 31 chr9 23331971 23332225 -118939219 - L2 LINE L2 -814 2500 2221 419 298 68 29 chr9 23333253 23333458 -118937986 + MLT1J1 LTR MaLR 1 213 -233 353 316 67 27 chr9 23335200 23335425 -118936019 - L1MC/D LINE L1 -2001 5807 5574 22 56 0 0 chr9 23335625 23335661 -118935783 + AT_rich Low_complexity Low_complexity 1 36 0 400 245 151 14 chr9 23335912 23336051 -118935393 - MIR SINE MIR -13 249 92 207 0 0 0 chr9 23336967 23336990 -118934454 + (TG)n Simple_repeat Simple_repeat 2 24 0 194 62 31 0 chr9 23337130 23337162 -118934282 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 2380 102 0 0 chr9 23338497 23338810 -118932634 + AluSq SINE Alu 1 313 0 706 281 99 36 chr9 23339513 23339815 -118931629 - LTR16A LTR ERVL -17 433 113 180 0 0 0 chr9 23340027 23340047 -118931397 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 820 201 13 0 chr9 23340331 23340490 -118930954 + MER5A DNA MER1_type 15 175 -14 796 164 0 22 chr9 23340530 23340664 -118930780 - FLAM_C SINE Alu -12 131 1 29 28 0 0 chr9 23340669 23340705 -118930739 + AT_rich Low_complexity Low_complexity 1 36 0 195 42 0 0 chr9 23341371 23341395 -118930049 + (TTA)n Simple_repeat Simple_repeat 2 25 0 279 321 33 87 chr9 23341444 23341628 -118929816 + MIR SINE MIR 23 196 -66 22 88 0 0 chr9 23342391 23342448 -118928996 + AT_rich Low_complexity Low_complexity 1 57 0 686 278 137 32 chr9 23342584 23342815 -118928629 - L1MC4a LINE L1 -1879 5998 5717 2262 92 0 0 chr9 23342815 23343134 -118928310 - AluSg SINE Alu 0 319 1 686 278 137 32 chr9 23343134 23343243 -118928201 - L1MC4a LINE L1 -2160 5717 5621 293 184 184 10 chr9 23343261 23343359 -118928085 - L1MC4a LINE L1 -2381 5496 5382 355 299 80 5 chr9 23345020 23345207 -118926237 + L1ME LINE L1 5622 5822 -299 390 42 0 0 chr9 23346027 23346075 -118925369 + (GA)n Simple_repeat Simple_repeat 1 48 0 2304 263 53 20 chr9 23346320 23348996 -118922448 - L1MEc LINE L1 -3274 2941 27 893 218 62 76 chr9 23349011 23349065 -118922379 + MER58A DNA MER1_type 3 56 -2364 2475 83 0 3 chr9 23349065 23349377 -118922067 - AluY SINE Alu 0 311 1 893 218 62 76 chr9 23349377 23349547 -118921897 + MER58A DNA MER1_type 56 224 0 1158 204 53 39 chr9 23349547 23350033 -118921411 - Zaphod DNA AcHobo -3043 988 496 2886 63 5 10 chr9 23350050 23350464 -118920980 - LTR7 LTR ERV1 -38 412 1 2287 89 54 5 chr9 23350464 23350836 -118920608 - HERVH LTR ERV1 0 7713 7324 1122 175 63 0 chr9 23350836 23351124 -118920320 - HERVH LTR ERV1 -1894 5819 2888 * 17073 81 21 28 chr9 23351123 23353772 -118917672 - HERVH LTR ERV1 -5084 2629 1 289 0 0 0 chr9 23353774 23353808 -118917636 - LTR7 LTR ERV1 -2 448 415 1068 259 144 5 chr9 23353810 23354200 -118917244 - Zaphod DNA AcHobo -3523 508 65 225 312 0 65 chr9 23354255 23354332 -118917112 - Zaphod DNA AcHobo -3958 73 2 190 191 21 43 chr9 23355201 23355248 -118916196 - MIR3 SINE MIR -10 198 153 719 248 100 53 chr9 23355477 23355640 -118915804 + L1MC4 LINE L1 7523 7677 -365 2165 132 0 0 chr9 23355640 23355935 -118915509 + AluSx SINE Alu 3 297 -15 719 248 100 53 chr9 23355935 23356110 -118915334 + L1MC4 LINE L1 7677 7877 -165 789 297 40 12 chr9 23356367 23356616 -118914828 + MIR SINE MIR 4 259 -3 332 233 117 10 chr9 23356873 23356976 -118914468 - L2 LINE L2 0 3313 3200 3518 112 0 50 chr9 23357035 23357590 -118913854 - MER1A DNA MER1_type 0 527 1 2276 106 0 0 chr9 23357779 23358071 -118913373 + AluSq SINE Alu 1 292 -21 386 316 74 63 chr9 23358099 23358466 -118912978 - L2 LINE L2 -1313 2001 1631 210 243 9 140 chr9 23358827 23358934 -118912510 + L2 LINE L2 3221 3313 0 217 303 30 0 chr9 23359439 23359505 -118911939 - MIR SINE MIR 0 262 195 526 220 40 40 chr9 23360048 23360198 -118911246 - MIR SINE MIR -11 251 102 1341 274 98 47 chr9 23360360 23361292 -118910152 + L1MEc LINE L1 36 1014 -5382 220 311 137 38 chr9 23361517 23361729 -118909715 + MIR SINE MIR 20 252 -10 402 56 28 14 chr9 23361835 23361906 -118909538 + (TG)n Simple_repeat Simple_repeat 2 73 0 260 307 67 53 chr9 23362165 23362315 -118909129 + MIR SINE MIR 63 214 -48 219 163 41 20 chr9 23365255 23365304 -118906140 - L2 LINE L2 -2 3311 3262 315 49 0 0 chr9 23366963 23367004 -118904440 + (TG)n Simple_repeat Simple_repeat 2 42 0 189 419 0 0 chr9 23367072 23367165 -118904279 - L2 LINE L2 -13 3300 3208 369 361 130 40 chr9 23367601 23368563 -118902881 - L2 LINE L2 -580 2734 1686 183 359 172 24 chr9 23368639 23368848 -118902596 + L2 LINE L2 2737 2976 -338 189 0 0 0 chr9 23368865 23368886 -118902558 + (T)n Simple_repeat Simple_repeat 1 21 0 227 214 127 48 chr9 23370366 23370492 -118900952 + MER113 DNA MER1_type? 6 141 -380 664 202 8 8 chr9 23370602 23370731 -118900713 - FLAM_A SINE Alu -4 129 1 33 0 0 0 chr9 23370944 23370977 -118900467 + AT_rich Low_complexity Low_complexity 1 33 0 290 331 86 43 chr9 23371524 23371663 -118899781 - MIR3 SINE MIR -61 147 3 208 188 31 0 chr9 23372189 23372253 -118899191 + (TA)n Simple_repeat Simple_repeat 1 66 0 2200 104 0 0 chr9 23372253 23372540 -118898904 - AluSx SINE Alu -25 287 1 428 296 62 40 chr9 23372540 23372716 -118898728 + MER5A DNA MER1_type 10 189 0 305 280 182 0 chr9 23374002 23374145 -118897299 - MIR SINE MIR -92 170 2 736 242 224 52 chr9 23374334 23374759 -118896685 - L2 LINE L2 -9 3304 2807 1556 199 7 10 chr9 23375429 23375720 -118895724 - AluJo SINE Alu -22 290 1 411 289 32 32 chr9 23375732 23375922 -118895522 + L1MC/D LINE L1 5612 5801 -2007 26 0 0 0 chr9 23376054 23376080 -118895364 + AT_rich Low_complexity Low_complexity 1 26 0 1315 188 92 19 chr9 23376794 23377065 -118894379 + AluJo SINE Alu 1 291 -11 232 178 0 0 chr9 23378139 23378202 -118893242 + (TAAA)n Simple_repeat Simple_repeat 1 63 0 200 244 22 0 chr9 23378524 23378569 -118892875 + (TATATG)n Simple_repeat Simple_repeat 5 50 0 21 36 0 0 chr9 23378569 23378597 -118892847 + AT_rich Low_complexity Low_complexity 1 28 0 227 293 38 38 chr9 23379255 23379388 -118892056 - MIR SINE MIR -56 206 74 212 311 66 0 chr9 23379392 23379453 -118891991 - L2 LINE L2 -1 3312 3248 387 346 119 7 chr9 23380385 23380654 -118890790 - L2 LINE L2 -555 2759 2461 1257 211 28 102 chr9 23381560 23381954 -118889490 + MLT1A1 LTR MaLR 1 365 0 385 296 60 50 chr9 23382061 23382260 -118889184 - MIR SINE MIR -41 221 21 229 300 75 80 chr9 23382837 23383037 -118888407 + L2 LINE L2 3067 3265 -7 1749 148 55 6 chr9 23383155 23383480 -118887964 - Tigger1 DNA MER2_type 0 2418 2078 16686 169 27 42 chr9 23383489 23384344 -118887100 - L1PA13 LINE L1 -1 6813 5946 2083 111 45 0 chr9 23384344 23384676 -118886768 - L1PA10 LINE L1 -10 6158 5812 16686 169 27 42 chr9 23384676 23387913 -118883531 - L1PA13 LINE L1 -868 5946 2802 5744 109 66 2 chr9 23387913 23389094 -118882350 - L1PA13 LINE L1 -7 6156 4939 16686 169 27 42 chr9 23389094 23390396 -118881048 - L1PA13 LINE L1 -4012 2802 1482 5695 218 84 3 chr9 23390397 23391637 -118879807 - L1PA13 LINE L1 -5447 1340 1 11524 125 36 41 chr9 23391647 23393744 -118877700 - Tigger1 DNA MER2_type -331 2087 1 455 303 50 75 chr9 23394743 23394984 -118876460 + MIR SINE MIR 12 246 -16 1016 205 24 139 chr9 23395076 23395485 -118875959 + MLT1A2 LTR MaLR 6 367 -7 400 288 28 34 chr9 23397893 23398070 -118873374 + MER5B DNA MER1_type 1 176 -2 187 402 0 12 chr9 23398241 23398323 -118873121 + MIR SINE MIR 38 118 -90 237 393 27 18 chr9 23398922 23399141 -118872303 + LTR33 LTR ERVL 71 291 -230 819 21 0 0 chr9 23399341 23399436 -118872008 + L1PA2 LINE L1 4 98 -6048 * 36832 30 1 0 chr9 23399434 23404676 -118866768 + L1PA2 LINE L1 908 6153 -2 397 272 96 41 chr9 23404975 23405339 -118866105 + L1ME4a LINE L1 5716 6099 -22 255 362 34 34 chr9 23405661 23405810 -118865634 - L2 LINE L2 -214 3058 2910 2115 137 73 14 chr9 23406589 23406933 -118864511 + THE1B LTR MaLR 1 364 0 2282 138 8 8 chr9 23407053 23407431 -118864013 - L1PB3 LINE L1 0 6154 5777 23 33 0 0 chr9 23407865 23407895 -118863549 + AT_rich Low_complexity Low_complexity 1 30 0 180 0 0 0 chr9 23408016 23408036 -118863408 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 24 53 0 0 chr9 23408424 23408462 -118862982 + AT_rich Low_complexity Low_complexity 1 38 0 198 0 0 0 chr9 23408662 23408684 -118862760 + (T)n Simple_repeat Simple_repeat 1 22 0 861 212 71 9 chr9 23410841 23411067 -118860377 + MER112 DNA MER1_type 14 253 -7 384 200 83 8 chr9 23411087 23411207 -118860237 - MER117 DNA MER1_type -41 156 28 229 320 39 13 chr9 23411247 23411325 -118860119 + L2 LINE L2 3210 3289 -24 354 225 113 53 chr9 23411675 23411826 -118859618 - MIR SINE MIR -58 204 45 264 59 0 0 chr9 23412149 23412183 -118859261 + (TG)n Simple_repeat Simple_repeat 2 35 0 976 124 214 0 chr9 23412499 23412677 -118858767 + MER20 DNA MER1_type 4 219 0 607 194 50 14 chr9 23412729 23412868 -118858576 + MIR SINE MIR 108 251 -11 233 314 47 0 chr9 23412958 23413044 -118858400 + MER103 DNA DNA 3 92 -74 230 388 29 0 chr9 23413143 23413246 -118858198 + MIR SINE MIR 20 125 -83 21 36 0 0 chr9 23413829 23413857 -118857587 + AT_rich Low_complexity Low_complexity 1 28 0 320 338 96 32 chr9 23415899 23416213 -118855231 + MARNA DNA Mariner 105 438 -148 555 305 72 21 chr9 23416229 23416465 -118854979 + MIR SINE MIR 5 252 -10 28 48 0 0 chr9 23416645 23416687 -118854757 + AT_rich Low_complexity Low_complexity 1 42 0 25 31 0 0 chr9 23417098 23417130 -118854314 + AT_rich Low_complexity Low_complexity 1 32 0 31 0 0 0 chr9 23419136 23419167 -118852277 + AT_rich Low_complexity Low_complexity 1 31 0 317 196 21 21 chr9 23422557 23422654 -118848790 + (CCG)n Simple_repeat Simple_repeat 3 99 0 24 96 0 0 chr9 23424060 23424133 -118847311 + AT_rich Low_complexity Low_complexity 1 73 0 284 227 11 0 chr9 23425144 23425232 -118846212 + (TA)n Simple_repeat Simple_repeat 2 90 0 39 0 0 0 chr9 23425297 23425336 -118846108 + AT_rich Low_complexity Low_complexity 1 39 0 21 36 0 0 chr9 23425845 23425873 -118845571 + AT_rich Low_complexity Low_complexity 1 28 0 229 270 68 0 chr9 23427211 23427285 -118844159 + MER5A DNA MER1_type 34 112 -77 283 340 77 26 chr9 23427694 23427888 -118843556 + MIR SINE MIR 27 230 -32 309 26 0 0 chr9 23427905 23427943 -118843501 + (GA)n Simple_repeat Simple_repeat 1 38 0 185 330 140 0 chr9 23428661 23428761 -118842683 + L2 LINE L2 3141 3254 -18 271 338 0 0 chr9 23429931 23430008 -118841436 - L2 LINE L2 -8 3264 3188 417 273 136 11 chr9 23430624 23430800 -118840644 - MIR SINE MIR -36 226 29 21 0 0 0 chr9 23432459 23432480 -118838964 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr9 23432897 23432922 -118838522 + AT_rich Low_complexity Low_complexity 1 25 0 383 361 42 24 chr9 23434124 23434290 -118837154 - MIR3 SINE MIR -24 184 16 218 306 12 56 chr9 23434365 23434468 -118836976 + MIR SINE MIR 16 114 -107 * 346 272 225 6 chr9 23434459 23434632 -118836812 - L2 LINE L2 0 3313 3103 711 220 134 9 chr9 23434685 23434917 -118836527 - MIR SINE MIR 0 262 2 429 258 88 92 chr9 23435057 23435340 -118836104 - MLT1K LTR MaLR -2 586 305 538 236 74 69 chr9 23435355 23435558 -118835886 - MIR SINE MIR -41 221 18 294 333 46 9 chr9 23436650 23436758 -118834686 + L2 LINE L2 3153 3264 -8 192 179 0 0 chr9 23437271 23437310 -118834134 + (ATG)n Simple_repeat Simple_repeat 1 39 0 848 258 83 17 chr9 23437313 23437553 -118833891 - MIR SINE MIR -1 261 6 538 272 118 18 chr9 23437812 23438091 -118833353 + L1MC5 LINE L1 7606 7912 -49 387 0 0 0 chr9 23438161 23438204 -118833240 + (TG)n Simple_repeat Simple_repeat 2 44 0 1431 179 0 12 chr9 23438205 23438451 -118832993 - AluJb SINE Alu -31 281 39 431 287 86 6 chr9 23438648 23438822 -118832622 + MIR SINE MIR 61 248 -14 214 322 167 52 chr9 23439664 23439934 -118831510 - L3 LINE CR1 -5 1572 1272 558 346 51 8 chr9 23440254 23440508 -118830936 - L3 LINE CR1 -399 1178 914 233 266 44 26 chr9 23440938 23441051 -118830393 - L1ME LINE L1 -371 5750 5636 27 0 0 0 chr9 23441135 23441162 -118830282 + AT_rich Low_complexity Low_complexity 1 27 0 315 246 33 25 chr9 23441178 23441300 -118830144 - L1ME LINE L1 -2358 5450 5328 387 60 0 0 chr9 23441734 23441784 -118829660 + (TG)n Simple_repeat Simple_repeat 1 50 0 205 347 14 0 chr9 23442247 23442319 -118829125 - L2 LINE L2 0 3272 3200 270 150 0 70 chr9 23443550 23443650 -118827794 + (GAAAA)n Simple_repeat Simple_repeat 2 94 0 2544 67 0 3 chr9 23443917 23444231 -118827213 + AluSq SINE Alu 1 313 0 1841 37 0 0 chr9 23444726 23444942 -118826502 - AluY SINE Alu 0 311 96 1519 181 32 7 chr9 23445070 23445351 -118826093 - AluJb SINE Alu -22 290 3 186 43 0 0 chr9 23445396 23445419 -118826025 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 1148 245 19 0 chr9 23446835 23447092 -118824352 + MIR SINE MIR 1 262 0 679 161 32 0 chr9 23447396 23447520 -118823924 - FLAM_A SINE Alu -2 131 4 418 322 0 55 chr9 23447883 23448082 -118823362 - MER5A DNA MER1_type 0 189 2 203 274 132 57 chr9 23448877 23448983 -118822461 - L2 LINE L2 -7 3265 3152 207 0 0 0 chr9 23449587 23449610 -118821834 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 476 289 31 19 chr9 23449975 23450180 -118821264 - MIR SINE MIR -24 238 30 222 313 69 62 chr9 23450580 23450740 -118820704 + MIR SINE MIR 91 251 -11 330 337 11 0 chr9 23450768 23450863 -118820581 - L2 LINE L2 -4 3309 3214 406 352 21 0 chr9 23450981 23451123 -118820321 - MIR SINE MIR -109 153 9 542 288 78 78 chr9 23451308 23451756 -118819688 - L2 LINE L2 -1 3312 2865 257 266 57 32 chr9 23451968 23452092 -118819352 - LTR33A LTR ERVL 0 523 397 527 252 49 28 chr9 23452233 23452376 -118819068 - LTR33 LTR ERVL -352 169 24 458 255 28 117 chr9 23452431 23452678 -118818766 - LTR33 LTR ERVL -294 227 3 224 288 108 0 chr9 23453696 23453807 -118817637 + L3b LINE CR1 1219 1341 -242 188 286 32 32 chr9 23453819 23453882 -118817562 - L2 LINE L2 -14 3258 3196 198 103 0 0 chr9 23455238 23455267 -118816177 + (A)n Simple_repeat Simple_repeat 1 29 0 268 333 0 56 chr9 23455801 23455909 -118815535 + L2 LINE L2 3211 3312 -1 4521 170 54 20 chr9 23456669 23458118 -118813326 - L1MB3 LINE L1 -10 6173 4675 236 264 55 0 chr9 23458857 23458948 -118812496 - MLT1J LTR MaLR -341 170 75 348 302 8 43 chr9 23459270 23459418 -118812026 + MIR SINE MIR 20 162 -46 238 200 0 0 chr9 23460659 23460699 -118810745 + MIR SINE MIR 218 257 -5 222 373 20 10 chr9 23460867 23460969 -118810475 - MIR SINE MIR -84 124 22 2196 85 0 4 chr9 23461099 23461380 -118810064 + AluSg SINE Alu 26 305 -5 371 258 45 76 chr9 23461853 23461985 -118809459 - MIR SINE MIR -1 261 134 366 313 80 42 chr9 23462012 23462256 -118809188 - MIR SINE MIR -11 251 5 1961 147 3 0 chr9 23462611 23462911 -118808533 + AluSq SINE Alu 1 301 -12 443 143 0 12 chr9 23462934 23463018 -118808426 + (GGAA)n Simple_repeat Simple_repeat 3 85 0 510 282 98 0 chr9 23463074 23463237 -118808207 + MIR SINE MIR 3 181 -81 389 316 137 38 chr9 23463505 23464010 -118807434 - L2 LINE L2 -8 3264 2685 252 216 102 23 chr9 23464782 23464870 -118806574 - MER103 DNA DNA -36 130 36 294 219 0 92 chr9 23464938 23465057 -118806387 - L1MC4 LINE L1 -29 8013 5970 28 29 0 0 chr9 23465238 23465273 -118806171 + AT_rich Low_complexity Low_complexity 1 35 0 823 281 35 31 chr9 23465332 23465724 -118805720 - L1MC4 LINE L1 -375 5787 5395 23 68 0 0 chr9 23465970 23466014 -118805430 + AT_rich Low_complexity Low_complexity 1 44 0 188 238 29 124 chr9 23466427 23466532 -118804912 - L2 LINE L2 -1 3312 3218 299 330 147 0 chr9 23466534 23466643 -118804801 - L2 LINE L2 0 3272 3148 493 283 159 68 chr9 23469414 23469828 -118801616 - MLT1H LTR MaLR -16 533 82 732 115 0 0 chr9 23469929 23470042 -118801402 + (GGAA)n Simple_repeat Simple_repeat 2 114 0 338 328 13 9 chr9 23470465 23470598 -118800846 + MIR SINE MIR 14 150 -58 4036 89 11 0 chr9 23472038 23472586 -118798858 + MER41A LTR ERV1 1 554 0 500 316 14 46 chr9 23472608 23472826 -118798618 - MIR SINE MIR -48 214 4 2500 71 0 6 chr9 23473049 23473360 -118798084 - AluSp SINE Alu -4 309 1 2513 58 0 7 chr9 23475357 23475665 -118795779 + AluY SINE Alu 1 306 -5 227 345 132 11 chr9 23475676 23475850 -118795594 - MIR3 SINE MIR -9 199 5 2108 126 7 0 chr9 23475852 23476161 -118795283 - AluSx SINE Alu -1 311 1 21 0 0 0 chr9 23476841 23476862 -118794582 + AT_rich Low_complexity Low_complexity 1 21 0 870 170 0 77 chr9 23477039 23477221 -118794223 - FRAM SINE Alu -16 160 1 2461 180 45 17 chr9 23477322 23477838 -118793606 + L1MC3 LINE L1 7250 7779 -6 202 220 20 0 chr9 23477871 23477921 -118793523 - L2 LINE L2 -290 2982 2932 274 330 11 23 chr9 23478043 23478131 -118793313 + MIR SINE MIR 20 106 -102 195 42 0 0 chr9 23478148 23478172 -118793272 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 202 271 0 0 chr9 23478619 23478667 -118792777 + MIR SINE MIR 104 151 -111 979 249 20 101 chr9 23478996 23479434 -118792010 + L2 LINE L2 2911 3313 0 2436 60 3 16 chr9 23479569 23479883 -118791561 - AluY SINE Alu -1 310 1 512 229 0 0 chr9 23480300 23480405 -118791039 - L1PB4 LINE L1 -33 6123 6019 587 53 0 0 chr9 23480842 23480917 -118790527 + AluY SINE Alu 11 85 -225 618 178 51 0 chr9 23481065 23481183 -118790261 + L2 LINE L2 3190 3313 0 280 301 32 45 chr9 23481419 23481575 -118789869 - L1ME3A LINE L1 -52 6118 5965 227 287 85 23 chr9 23481624 23481640 -118789804 - L1MA1 LINE L1 -336 5966 5951 380 167 153 40 chr9 23481640 23481790 -118789654 - L1ME3A LINE L1 -214 5956 5790 583 309 28 6 chr9 23482110 23482291 -118789153 + MIR SINE MIR 4 188 -74 201 190 13 152 chr9 23482322 23482401 -118789043 - MIR SINE MIR -16 246 179 1384 198 12 6 chr9 23483096 23483415 -118788029 + MER33 DNA MER1_type 1 321 -3 432 282 135 6 chr9 23483600 23483770 -118787674 - MIR SINE MIR -70 192 1 393 102 0 0 chr9 23484273 23484332 -118787112 + (GA)n Simple_repeat Simple_repeat 1 59 0 1685 211 91 40 chr9 23484439 23484826 -118786618 + MLT2B2 LTR ERVL 1 367 -148 2167 138 11 8 chr9 23484826 23485180 -118786264 - THE1A LTR MaLR 0 355 1 11308 91 19 6 chr9 23485181 23486740 -118784704 - THE1A-int LTR MaLR -1 1579 1 2192 130 14 8 chr9 23486740 23487093 -118784351 - THE1A LTR MaLR 0 355 1 1685 211 91 40 chr9 23487093 23487129 -118784315 + MLT2B2 LTR ERVL 366 449 -66 446 0 19 0 chr9 23487209 23487263 -118784181 + (TAGA)n Simple_repeat Simple_repeat 3 57 0 21 71 0 0 chr9 23487423 23487465 -118783979 + AT_rich Low_complexity Low_complexity 1 42 0 222 156 0 0 chr9 23488149 23488194 -118783250 + (CA)n Simple_repeat Simple_repeat 2 46 0 343 293 58 97 chr9 23489143 23489402 -118782042 + L1MEd LINE L1 1 249 -5870 473 304 7 0 chr9 23489559 23489694 -118781750 - MER63 DNA MER1_type -74 762 1 713 186 0 0 chr9 23489961 23490079 -118781365 + MLT1A1 LTR MaLR 170 287 -78 17260 192 19 15 chr9 23490529 23491527 -118779917 + L1PA15 LINE L1 1924 2916 -3952 2324 203 19 72 chr9 23491527 23492112 -118779332 + MLT2B3 LTR ERVL 1 554 0 17260 192 19 15 chr9 23492112 23494539 -118776905 + L1PA15 LINE L1 2916 5386 -1482 2329 91 0 3 chr9 23494539 23494836 -118776608 + AluSx SINE Alu 1 296 -16 17260 192 19 15 chr9 23494836 23496326 -118775118 + L1PA15 LINE L1 5386 6868 0 1736 191 30 0 chr9 23496341 23496801 -118774643 + AluJb SINE Alu 3 471 0 650 189 85 20 chr9 23496802 23496955 -118774489 + L1MC4 LINE L1 6838 7000 -1042 * 738 296 67 3 chr9 23496941 23497225 -118774219 + L1ME1 LINE L1 5773 6074 -92 1050 246 132 24 chr9 23497249 23497740 -118773704 + L1M4 LINE L1 2315 2858 -3288 362 179 60 15 chr9 23497771 23497838 -118773606 + MER21B LTR ERV1 27 96 -767 251 252 107 48 chr9 23497879 23497982 -118773462 + MER21B LTR ERV1 87 195 -668 553 255 35 86 chr9 23497990 23498304 -118773140 + L1M4 LINE L1 3473 3770 -2376 881 197 74 77 chr9 23498317 23498627 -118772817 + Charlie4a DNA MER1_type 200 508 0 740 275 55 50 chr9 23498630 23499027 -118772417 + HAL1 LINE L1 750 1148 -1359 * 4262 161 136 77 chr9 23499024 23499080 -118772364 + L1MC3 LINE L1 6532 6583 -1202 297 51 0 0 chr9 23499080 23499119 -118772325 + (CA)n Simple_repeat Simple_repeat 2 40 0 4262 161 136 77 chr9 23499119 23499365 -118772079 + L1MC3 LINE L1 6583 6813 -972 342 0 0 0 chr9 23499365 23499403 -118772041 + (CA)n Simple_repeat Simple_repeat 2 39 0 4262 161 136 77 chr9 23499403 23499623 -118771821 + L1MC3 LINE L1 6813 7019 -766 265 274 27 0 chr9 23499623 23499696 -118771748 + MLT1F1 LTR MaLR 51 125 -442 4262 161 136 77 chr9 23499696 23499958 -118771486 + L1MC3 LINE L1 7019 7264 -521 246 32 0 0 chr9 23499958 23499989 -118771455 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4262 161 136 77 chr9 23499989 23500313 -118771131 + L1MC3 LINE L1 7264 7785 0 568 294 86 39 chr9 23500429 23500892 -118770552 + L1M4 LINE L1 2346 2830 -3316 189 0 0 0 chr9 23501510 23501531 -118769913 + (T)n Simple_repeat Simple_repeat 1 21 0 372 94 0 0 chr9 23501918 23501971 -118769473 + (GGGA)n Simple_repeat Simple_repeat 4 56 0 1002 119 6 11 chr9 23501972 23502149 -118769295 + (GAAA)n Simple_repeat Simple_repeat 4 179 0 2834 7 0 0 chr9 23502864 23503169 -118768275 + AluYa5 SINE Alu 1 305 -6 298 265 173 19 chr9 23503179 23503659 -118767785 + L1M4 LINE L1 2852 3405 -2741 6209 152 38 11 chr9 23503668 23505678 -118765766 + L1MA2 LINE L1 4208 6304 0 597 343 22 11 chr9 23505729 23506091 -118765353 + L1M4 LINE L1 3472 3837 -2309 459 136 0 0 chr9 23506397 23506478 -118764966 - L1MA5A LINE L1 -3 6294 6214 724 336 52 12 chr9 23506822 23507146 -118764298 + ERVL LTR ERVL 4509 4845 -919 547 277 135 30 chr9 23507375 23507671 -118763773 + LTR16A LTR ERVL 83 409 -41 358 351 53 0 chr9 23507853 23507984 -118763460 - L2 LINE L2 -1 3271 3134 23 33 0 0 chr9 23508051 23508081 -118763363 + AT_rich Low_complexity Low_complexity 1 30 0 2012 53 89 60 chr9 23508130 23508432 -118763012 + AluY SINE Alu 1 311 0 30504 116 11 65 chr9 23508535 23515010 -118756434 - L1PA7 LINE L1 0 6154 35 264 387 57 21 chr9 23515054 23515389 -118756055 - L2 LINE L2 -226 3046 2701 291 314 81 32 chr9 23515402 23515526 -118755918 + MIR3 SINE MIR 28 157 -51 242 360 0 0 chr9 23515786 23515886 -118755558 - MIR SINE MIR 0 262 163 447 331 53 0 chr9 23516360 23516511 -118754933 + MIR SINE MIR 95 253 -9 2335 84 0 0 chr9 23516798 23517085 -118754359 - AluY SINE Alu -12 299 13 2519 190 11 50 chr9 23517199 23517735 -118753709 - MLT2B2 LTR ERVL 0 515 1 1327 204 117 0 chr9 23518330 23518595 -118752849 - AluJb SINE Alu -4 298 3 911 210 6 0 chr9 23519747 23519923 -118751521 + MER5B DNA MER1_type 2 178 0 233 363 22 0 chr9 23519935 23520026 -118751418 + MLT1L LTR MaLR 176 268 -347 315 233 58 19 chr9 23520149 23520252 -118751192 + MLT1L LTR MaLR 505 611 -4 426 279 7 78 chr9 23520308 23520462 -118750982 + MER5A DNA MER1_type 5 158 -31 312 347 16 0 chr9 23520545 23520666 -118750778 - MIR3 SINE MIR -10 198 76 231 125 0 0 chr9 23522613 23522653 -118748791 + (CA)n Simple_repeat Simple_repeat 2 41 0 441 239 168 7 chr9 23522854 23523009 -118748435 - MIR SINE MIR -4 258 79 24 67 0 0 chr9 23524221 23524266 -118747178 + AT_rich Low_complexity Low_complexity 1 45 0 28 0 0 0 chr9 23524780 23524808 -118746636 + AT_rich Low_complexity Low_complexity 1 28 0 7053 40 7 0 chr9 23524811 23525683 -118745761 - L1PA4 LINE L1 -8 6147 5270 429 272 74 37 chr9 23525683 23525845 -118745599 + MER5A DNA MER1_type 22 189 0 211 237 105 35 chr9 23526027 23526141 -118745303 + MIR SINE MIR 71 192 -70 1692 192 3 3 chr9 23527137 23527429 -118744015 + AluJo SINE Alu 5 296 -16 2134 103 31 0 chr9 23527506 23527798 -118743646 + AluSg SINE Alu 1 301 -9 526 306 50 54 chr9 23528578 23528836 -118742608 - MIR SINE MIR 0 262 6 1544 65 0 0 chr9 23529087 23529272 -118742172 + AluY SINE Alu 1 185 -126 611 117 0 0 chr9 23529272 23529366 -118742078 + AluY SINE Alu 218 311 0 868 343 116 11 chr9 23529572 23529951 -118741493 - MER115 DNA AcHobo -237 456 38 215 361 83 15 chr9 23529973 23530106 -118741338 - MIR3 SINE MIR -63 145 4 448 323 16 0 chr9 23531672 23531799 -118739645 - MER5A DNA MER1_type 0 189 61 504 115 0 82 chr9 23531822 23531944 -118739500 - L1MA8 LINE L1 -2 6289 6178 4099 132 19 23 chr9 23531970 23532696 -118738748 - L1MA8 LINE L1 -31 6260 5538 2077 123 0 7 chr9 23533702 23534013 -118737431 + AluSq SINE Alu 1 309 0 255 174 43 0 chr9 23536376 23536422 -118735022 + HSMAR1 DNA Mariner 4 51 -1236 2272 104 0 3 chr9 23536450 23536749 -118734695 + AluY SINE Alu 1 298 -13 358 343 65 5 chr9 23536749 23536965 -118734479 - L2 LINE L2 -534 2780 2552 1286 233 49 6 chr9 23537032 23537358 -118734086 - MER58B DNA MER1_type 0 341 2 369 337 87 17 chr9 23538117 23538289 -118733155 - MIR SINE MIR -77 185 2 293 366 0 0 chr9 23538290 23538383 -118733061 + MIR3 SINE MIR 110 202 -6 213 250 0 0 chr9 23539158 23539218 -118732226 + GA-rich Low_complexity Low_complexity 1 60 0 2059 123 3 0 chr9 23539822 23540115 -118731329 + AluSx SINE Alu 1 294 -18 21 0 0 0 chr9 23540997 23541018 -118730426 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 23541548 23541570 -118729874 + AT_rich Low_complexity Low_complexity 1 22 0 1391 214 106 101 chr9 23542444 23543432 -118728012 - Charlie2 DNA MER1_type 0 2862 1870 289 259 111 9 chr9 23543455 23543656 -118727788 - Charlie2 DNA MER1_type -2496 286 1 318 318 56 32 chr9 23543808 23543934 -118727510 + MIR3 SINE MIR 8 136 -72 29 60 0 0 chr9 23544095 23544145 -118727299 + AT_rich Low_complexity Low_complexity 1 50 0 188 229 33 0 chr9 23544261 23544322 -118727122 + GA-rich Low_complexity Low_complexity 1 63 0 267 250 0 0 chr9 23545062 23545122 -118726322 + (CA)n Simple_repeat Simple_repeat 2 61 0 334 306 169 0 chr9 23545484 23545667 -118725777 - MIR SINE MIR 0 262 49 1169 176 189 47 chr9 23546089 23546448 -118724996 + MER45B DNA AcHobo 519 928 -112 593 301 53 31 chr9 23546900 23547126 -118724318 - MIR SINE MIR -4 258 28 225 186 85 0 chr9 23548808 23548867 -118722577 + LTR33A LTR ERVL 450 513 -10 1489 260 50 32 chr9 23549830 23550346 -118721098 - L2 LINE L2 -2 3311 2776 235 239 120 65 chr9 23550417 23550509 -118720935 + Charlie8 DNA MER1_type 152 248 -2169 1820 161 0 57 chr9 23550511 23550828 -118720616 - AluJb SINE Alu -13 299 1 809 262 59 45 chr9 23552312 23552663 -118718781 - LTR16A LTR ERVL -6 444 1 182 308 19 19 chr9 23552784 23552836 -118718608 + MIR SINE MIR 32 83 -179 1798 190 137 24 chr9 23552840 23553624 -118717820 - MER45B DNA AcHobo 0 1040 123 370 281 36 50 chr9 23553672 23553811 -118717633 + MIR SINE MIR 77 213 -49 263 241 0 0 chr9 23554015 23554069 -118717375 - L2 LINE L2 -5 3308 3255 376 289 152 46 chr9 23554098 23554295 -118717149 + L2 LINE L2 3055 3272 0 350 305 67 60 chr9 23554304 23554619 -118716825 - L2 LINE L2 -989 2325 2009 288 379 63 25 chr9 23555135 23555502 -118715942 - L2 LINE L2 -1972 1342 962 535 329 28 24 chr9 23555517 23555766 -118715678 - MIR SINE MIR -10 252 3 279 0 0 0 chr9 23559882 23559913 -118711531 + (TA)n Simple_repeat Simple_repeat 1 31 0 11026 35 23 0 chr9 23559913 23562038 -118709406 - L1PA5 LINE L1 0 6154 3999 1769 52 5 0 chr9 23562039 23562252 -118709192 + 7SLRNA srpRNA srpRNA 18 231 -89 27 49 0 0 chr9 23562383 23562424 -118709020 + AT_rich Low_complexity Low_complexity 1 41 0 1449 213 27 43 chr9 23562881 23563257 -118708187 - MLT1A2 LTR MaLR -4 370 1 23 0 0 0 chr9 23563259 23563282 -118708162 + AT_rich Low_complexity Low_complexity 1 23 0 392 282 0 12 chr9 23563350 23563435 -118708009 - MER5B DNA MER1_type -45 133 50 2445 230 102 14 chr9 23563557 23564447 -118706997 - L1ME2 LINE L1 -8 6156 5179 213 119 0 0 chr9 23565450 23565492 -118705952 + (A)n Simple_repeat Simple_repeat 1 42 0 435 274 130 43 chr9 23565918 23566148 -118705296 + MIR SINE MIR 12 261 -1 23 0 0 0 chr9 23566725 23566748 -118704696 + AT_rich Low_complexity Low_complexity 1 23 0 6510 16 0 3 chr9 23567620 23568368 -118703076 + L1PA3 LINE L1 5408 6153 -2 230 132 19 0 chr9 23568377 23568430 -118703014 + A-rich Low_complexity Low_complexity 3 56 0 510 300 73 85 chr9 23568823 23569140 -118702304 - L2 LINE L2 0 3272 2960 2265 117 10 0 chr9 23570186 23570495 -118700949 - AluSx SINE Alu 0 312 1 243 250 29 0 chr9 23571766 23571834 -118699610 + MLT1J1 LTR MaLR 2 71 -375 384 253 151 14 chr9 23571872 23572018 -118699426 + MLT1J2 LTR MaLR 151 316 -134 425 351 7 23 chr9 23572404 23572593 -118698851 + MIR3 SINE MIR 22 207 -1 334 241 154 41 chr9 23572882 23573043 -118698401 + MIR SINE MIR 9 252 -10 193 385 54 27 chr9 23573071 23573219 -118698225 + L2 LINE L2 3121 3272 0 527 188 61 91 chr9 23573414 23573579 -118697865 + MER5B DNA MER1_type 18 177 -1 338 104 0 0 chr9 23573690 23573738 -118697706 - MLT2D LTR ERVL 0 397 350 223 246 0 15 chr9 23573741 23573806 -118697638 + (TG)n Simple_repeat Simple_repeat 1 64 0 1759 180 23 12 chr9 23573862 23574207 -118697237 - MLT2D LTR ERVL -50 364 16 21 36 0 0 chr9 23576268 23576296 -118695148 + AT_rich Low_complexity Low_complexity 1 28 0 1322 25 0 0 chr9 23576488 23576645 -118694799 + L1PA3 LINE L1 5998 6154 -1 2237 149 20 78 chr9 23576659 23576695 -118694749 - MSTA LTR MaLR -4 424 387 2086 142 0 0 chr9 23576695 23576983 -118694461 + AluSx SINE Alu 1 288 -24 2237 149 20 78 chr9 23576983 23577396 -118694048 - MSTA LTR MaLR -41 387 1 9622 173 6 3 chr9 23577396 23579042 -118692402 - MSTA-int LTR MaLR 0 1651 1 452 324 8 191 chr9 23579042 23579298 -118692146 - MSTA LTR MaLR 0 426 218 1452 174 39 0 chr9 23579314 23579595 -118691849 + MSTA LTR MaLR 137 428 0 1945 194 2 12 chr9 23579596 23580019 -118691425 + L1PB3 LINE L1 3420 3838 -2308 * 5075 154 33 1 chr9 23580012 23581700 -118689744 + L1PB3 LINE L1 4407 6147 -7 491 271 29 59 chr9 23582032 23582202 -118689242 + MER5A DNA MER1_type 4 168 -21 215 348 142 21 chr9 23582225 23582366 -118689078 + MER5A DNA MER1_type 27 184 -5 363 190 46 155 chr9 23582860 23583034 -118688410 + MIR SINE MIR 53 208 0 405 296 193 11 chr9 23583835 23584011 -118687433 + MIR SINE MIR 1 208 -54 363 317 32 0 chr9 23584023 23584146 -118687298 - L2 LINE L2 0 3313 3187 23 54 0 0 chr9 23584228 23584265 -118687179 + AT_rich Low_complexity Low_complexity 1 37 0 861 256 14 23 chr9 23584450 23584669 -118686775 + MIR SINE MIR 2 218 -44 375 207 0 35 chr9 23584620 23584707 -118686737 - MIR SINE MIR -44 218 135 * 2837 54 13 3 chr9 23584747 23585119 -118686325 + L1PA5 LINE L1 5775 6150 -4 412 142 65 7 chr9 23585210 23585365 -118686079 + (TA)n Simple_repeat Simple_repeat 2 165 0 884 204 44 40 chr9 23585389 23585639 -118685805 - MER63C DNA MER1_type -420 510 260 202 273 0 0 chr9 23586072 23586116 -118685328 - MIR3 SINE MIR -14 194 151 293 231 58 10 chr9 23586951 23587055 -118684389 + MER103 DNA DNA 58 166 0 788 344 122 34 chr9 23587466 23587830 -118683614 - L2 LINE L2 -6 3266 2936 1714 142 25 14 chr9 23587830 23588105 -118683339 + AluSx SINE Alu 21 298 -14 788 344 122 34 chr9 23588105 23588482 -118682962 - L2 LINE L2 -336 2936 2458 22 35 0 0 chr9 23588804 23588833 -118682611 + AT_rich Low_complexity Low_complexity 1 29 0 2086 122 0 7 chr9 23589127 23589422 -118682022 + AluSx SINE Alu 1 293 -19 1258 123 20 5 chr9 23589466 23589669 -118681775 - AluSg/x SINE Alu -2 308 103 5602 70 5 5 chr9 23589669 23590436 -118681008 + LTR17 LTR ERV1 1 767 -13 1813 192 68 13 chr9 23590579 23591037 -118680407 - L1MDa LINE L1 -4237 2303 1821 812 255 21 43 chr9 23591429 23591690 -118679754 - MIR SINE MIR 0 262 12 689 305 136 36 chr9 23591892 23592369 -118679075 - L2 LINE L2 -2 3311 2776 718 250 46 0 chr9 23592415 23592631 -118678813 - L1MB7 LINE L1 -24 6160 5935 2383 58 15 0 chr9 23592631 23592973 -118678471 + L1P LINE L1 2266 2612 -3534 8886 166 47 6 chr9 23593077 23596335 -118675109 + L1PBa LINE L1 1333 4728 -2134 696 77 48 0 chr9 23596335 23596439 -118675005 + AluY SINE Alu 1 109 -202 15080 72 14 0 chr9 23596586 23598689 -118672755 - L1P LINE L1 -3808 2338 206 186 208 146 0 chr9 23598966 23599014 -118672430 + L2 LINE L2 3257 3311 -2 226 265 108 48 chr9 23599126 23599292 -118672152 - MLT-int LTR MaLR -656 1079 904 303 292 92 79 chr9 23600056 23600149 -118671295 - MIR SINE MIR 0 262 172 2033 174 36 71 chr9 23600149 23600672 -118670772 + MLT1D LTR MaLR 1 505 0 303 292 92 79 chr9 23600672 23600818 -118670626 - MIR SINE MIR -90 172 20 991 118 70 5 chr9 23601000 23601186 -118670258 + MSTA LTR MaLR 1 198 -230 1291 122 210 30 chr9 23601186 23601448 -118669996 + AluSg1 SINE Alu 1 309 0 2455 90 0 0 chr9 23601455 23601765 -118669679 + AluSq SINE Alu 1 310 -3 2191 120 0 0 chr9 23601767 23602059 -118669385 + AluSq SINE Alu 1 292 -21 217 185 167 0 chr9 23602163 23602217 -118669227 + L2 LINE L2 2125 2187 -1127 1215 236 129 70 chr9 23602218 23603093 -118668351 + L2 LINE L2 2370 3306 -7 1058 141 120 43 chr9 23603187 23603418 -118668026 - Charlie5 DNA MER1_type 0 2624 2359 2186 113 23 0 chr9 23603418 23603719 -118667725 - AluSx SINE Alu -4 308 1 1058 141 120 43 chr9 23603719 23603813 -118667631 - Charlie5 DNA MER1_type -265 2359 2274 540 134 21 0 chr9 23603837 23603934 -118667510 - MER3 DNA MER1_type -41 168 70 261 324 266 21 chr9 23603962 23604252 -118667192 + L2 LINE L2 2899 3259 -13 1950 123 14 20 chr9 23604683 23604975 -118666469 + AluSq SINE Alu 2 291 -22 1436 187 13 38 chr9 23605982 23606297 -118665147 + MLT1A1 LTR MaLR 1 307 -58 5098 123 38 6 chr9 23606397 23608187 -118663257 + L1PA14 LINE L1 182 2258 -4605 1750 86 71 0 chr9 23608191 23608458 -118662986 - L1PBa LINE L1 -4355 2508 2223 3014 196 8 0 chr9 23608460 23609113 -118662331 + L1 LINE L1 2944 3601 -3261 * 3862 194 26 19 chr9 23609112 23609414 -118662030 + L1PA4 LINE L1 4197 4495 -1656 5318 49 3 3 chr9 23609414 23610086 -118661358 + L1PA4 LINE L1 5483 6154 -1 3862 194 26 19 chr9 23610086 23611200 -118660244 + L1PA4 LINE L1 4495 5617 -534 19248 50 6 1 chr9 23611300 23614602 -118656842 + L1PA5 LINE L1 2816 6131 -23 275 107 53 40 chr9 23614616 23614691 -118656753 + GA-rich Low_complexity Low_complexity 1 76 0 744 115 5 11 chr9 23614691 23614824 -118656620 - THE1C LTR MaLR -25 350 212 9539 145 19 2 chr9 23614959 23617295 -118654149 + L1PA14 LINE L1 4278 6652 -225 6021 214 31 34 chr9 23617397 23617951 -118653493 + L1P LINE L1 3111 3665 -2481 243 0 0 0 chr9 23617951 23617978 -118653466 + (CA)n Simple_repeat Simple_repeat 2 28 0 6021 214 31 34 chr9 23617978 23618532 -118652912 + L1P LINE L1 3665 4219 -1927 2020 41 4 0 chr9 23618532 23618777 -118652667 + L1PA5 LINE L1 5903 6148 -6 6021 214 31 34 chr9 23618777 23619343 -118652101 + L1P LINE L1 4219 4781 -1365 3113 138 52 0 chr9 23619385 23619906 -118651538 + L1P LINE L1 11 558 -5588 * 16505 51 15 1 chr9 23619904 23622134 -118649310 + L1P LINE L1 2607 4867 -1279 218 229 213 0 chr9 23622344 23622405 -118649039 - MIR3 SINE MIR -15 193 120 1532 193 35 3 chr9 23622800 23623090 -118648354 + AluJo SINE Alu 1 299 -13 516 144 22 0 chr9 23624920 23625010 -118646434 + AluY SINE Alu 218 309 -2 550 203 51 13 chr9 23625546 23625704 -118645740 - Charlie5 DNA MER1_type 0 2616 2453 259 311 40 0 chr9 23625832 23625906 -118645538 - L3 LINE CR1 -435 1142 1066 278 287 27 27 chr9 23626217 23626367 -118645077 - L1MC/D LINE L1 -1946 5862 5713 773 214 154 15 chr9 23626571 23628405 -118643039 + L1ME2 LINE L1 3674 5866 -298 1794 108 28 14 chr9 23628760 23629047 -118642397 - THE1C LTR MaLR 0 375 85 360 0 0 0 chr9 23729713 23729753 -118541691 + (GA)n Simple_repeat Simple_repeat 1 40 0 301 282 178 19 chr9 23729806 23730019 -118541425 - L1ME LINE L1 -276 5845 5599 1614 101 55 5 chr9 23730297 23730516 -118540928 - MER30 DNA MER1_type 0 230 1 25 90 0 0 chr9 23731793 23731860 -118539584 + AT_rich Low_complexity Low_complexity 1 67 0 369 0 0 0 chr9 23732901 23732942 -118538502 + (TG)n Simple_repeat Simple_repeat 2 42 0 293 68 23 0 chr9 23733594 23733638 -118537806 + (CCCCCA)n Simple_repeat Simple_repeat 4 48 0 233 281 191 56 chr9 23735491 23735758 -118535686 + L2 LINE L2 2951 3253 -60 274 130 43 0 chr9 23736033 23736079 -118535365 - MLT2D LTR ERVL 0 414 367 227 232 12 73 chr9 23736096 23736119 -118535325 + (TATATG)n Simple_repeat Simple_repeat 1 24 -53 1588 138 50 133 chr9 23736119 23736495 -118534949 - MER7A DNA MER2_type -2 344 2 227 232 12 73 chr9 23736495 23736553 -118534891 + (TATATG)n Simple_repeat Simple_repeat 24 77 0 366 80 0 0 chr9 23736556 23736606 -118534838 + (GA)n Simple_repeat Simple_repeat 1 50 0 1977 135 94 18 chr9 23736607 23736947 -118534497 - MLT2D LTR ERVL -48 366 1 383 328 77 8 chr9 23737419 23737604 -118533840 - MIR SINE MIR -56 206 16 264 279 182 36 chr9 23738125 23738418 -118533026 + L1MC4a LINE L1 5380 5720 -401 304 254 15 0 chr9 23738510 23738644 -118532800 + (TA)n Simple_repeat Simple_repeat 2 137 0 358 258 84 105 chr9 23738843 23739177 -118532267 + L1MC4a LINE L1 5776 6102 -19 311 267 50 51 chr9 23739184 23739309 -118532135 - MER5B DNA MER1_type -51 138 4 22 35 0 0 chr9 23739827 23739856 -118531588 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr9 23742001 23742026 -118529418 + AT_rich Low_complexity Low_complexity 1 25 0 368 232 196 0 chr9 23743117 23743255 -118528189 + MIR SINE MIR 84 248 -14 288 0 0 0 chr9 23744209 23744241 -118527203 + (TG)n Simple_repeat Simple_repeat 1 32 0 2035 111 14 10 chr9 23746176 23746488 -118524956 + AluSx SINE Alu 1 313 0 28 29 0 0 chr9 23746888 23746923 -118524521 + AT_rich Low_complexity Low_complexity 1 35 0 360 306 148 14 chr9 23750461 23750670 -118520774 - MIR SINE MIR -25 237 1 1881 157 106 52 chr9 23752035 23752404 -118519040 - MLT1B LTR MaLR -1 389 1 1448 219 38 98 chr9 23752456 23752550 -118518894 - L1MC5 LINE L1 -372 7589 7491 1462 197 3 20 chr9 23752550 23752849 -118518595 - AluJo SINE Alu -17 295 2 1448 219 38 98 chr9 23752849 23753254 -118518190 - L1MC5 LINE L1 -470 7491 7133 1738 143 24 31 chr9 23753254 23753563 -118517881 - AluJo SINE Alu 0 307 1 1448 219 38 98 chr9 23753563 23753700 -118517744 - L1MC5 LINE L1 -828 7133 6989 6170 27 1 1 chr9 23753712 23754387 -118517057 - L1PA3 LINE L1 -5 6150 5476 1202 219 40 18 chr9 23754390 23754719 -118516725 - L1M4 LINE L1 -1314 4832 4497 1056 41 0 0 chr9 23754736 23754858 -118516586 - L1PA3 LINE L1 0 6155 6034 3265 18 0 0 chr9 23754858 23755333 -118516111 - L1P2 LINE L1 -666 5489 5015 * 5040 29 7 0 chr9 23755324 23755912 -118515532 + L1P2 LINE L1 4415 5006 -1140 811 205 19 106 chr9 23755916 23756232 -118515212 - L1MC5 LINE L1 -966 6995 6707 1451 103 0 5 chr9 23756243 23756437 -118515007 + AluSg SINE Alu 1 193 -117 1723 81 0 0 chr9 23757151 23757362 -118514082 + AluSq SINE Alu 12 222 -91 2039 98 20 3 chr9 23757474 23757769 -118513675 + AluSx SINE Alu 1 300 -12 847 315 125 35 chr9 23758017 23758772 -118512672 - L2 LINE L2 -193 3079 2260 6301 86 6 15 chr9 23758977 23760358 -118511086 - L1PA13 LINE L1 -19 6144 4652 240 86 0 0 chr9 23760358 23760393 -118511051 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 6301 86 6 15 chr9 23760393 23760943 -118510501 - L1PA13 LINE L1 -1511 4652 4099 11825 206 49 37 chr9 23760963 23762550 -118508894 - L1PA12 LINE L1 -3205 4379 2812 1815 147 10 31 chr9 23762550 23762842 -118508602 + AluSx SINE Alu 1 286 -26 11825 206 49 37 chr9 23762842 23766254 -118505190 - L1PA12 LINE L1 -4772 2812 5 22 0 0 0 chr9 23766276 23766298 -118505146 + AT_rich Low_complexity Low_complexity 1 22 0 22 70 0 0 chr9 23766323 23766366 -118505078 + AT_rich Low_complexity Low_complexity 1 43 0 449 302 24 0 chr9 23766745 23766871 -118504573 - L2 LINE L2 -7 3306 3178 27 73 0 0 chr9 23767280 23767335 -118504109 + AT_rich Low_complexity Low_complexity 1 55 0 254 203 238 23 chr9 23768081 23768262 -118503182 + L1MC4 LINE L1 6964 7184 -777 352 286 193 11 chr9 23769690 23769912 -118501532 + MIR SINE MIR 10 262 0 309 216 0 29 chr9 23770166 23770268 -118501176 + MER113 DNA MER1_type? 18 116 -405 283 182 45 15 chr9 23770383 23770449 -118500995 + MER113 DNA MER1_type? 453 520 -1 192 267 12 81 chr9 23770450 23770536 -118500908 - MIR SINE MIR -59 203 124 1200 236 130 25 chr9 23770805 23771204 -118500240 + MLT1E LTR MaLR 34 474 -119 213 324 0 15 chr9 23771397 23771465 -118499979 + CT-rich Low_complexity Low_complexity 2 68 0 1891 134 20 13 chr9 23772027 23772333 -118499111 + MER1B DNA MER1_type 32 339 0 419 315 97 28 chr9 23772896 23773112 -118498332 - MIR SINE MIR -12 250 20 821 243 23 18 chr9 23773767 23773985 -118497459 - MER58A DNA MER1_type -1 223 5 538 319 81 0 chr9 23774000 23774210 -118497234 + MIR SINE MIR 35 261 -1 249 324 90 95 chr9 23776050 23776272 -118495172 + L2 LINE L2 3048 3268 -4 214 195 0 0 chr9 23777422 23777463 -118493981 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 1759 202 116 7 chr9 23778869 23779290 -118492154 + MLT1C LTR MaLR 1 467 0 433 341 22 22 chr9 23779326 23779508 -118491936 - MIR SINE MIR -60 202 21 251 311 61 23 chr9 23779894 23780026 -118491418 - MIR SINE MIR -60 202 66 308 231 198 0 chr9 23781346 23781437 -118490007 - L2 LINE L2 0 3313 3205 227 150 25 0 chr9 23782235 23782275 -118489169 - L2 LINE L2 -2 3311 3271 308 223 95 40 chr9 23782718 23782866 -118488578 + MER113 DNA MER1_type? 1 156 -365 28 71 0 0 chr9 23782880 23782936 -118488508 + AT_rich Low_complexity Low_complexity 1 56 0 297 0 0 0 chr9 23784134 23784167 -118487277 + (TG)n Simple_repeat Simple_repeat 2 34 0 270 345 122 17 chr9 23784319 23784538 -118486906 - MIR SINE MIR -3 259 11 189 280 20 0 chr9 23785285 23785335 -118486109 - L2 LINE L2 -8 3264 3214 * 371 390 16 16 chr9 23785310 23785500 -118485944 - MIR SINE MIR -28 234 45 292 315 98 33 chr9 23786006 23786190 -118485254 + MIR SINE MIR 11 206 -56 204 191 0 43 chr9 23786252 23786299 -118485145 + CT-rich Low_complexity Low_complexity 4 48 0 1800 171 0 25 chr9 23786875 23787190 -118484254 - AluJb SINE Alu -5 307 1 431 296 70 25 chr9 23787886 23788085 -118483359 + MIR SINE MIR 45 252 -10 276 335 177 5 chr9 23788765 23788974 -118482470 + MIR SINE MIR 18 262 0 228 317 32 54 chr9 23789265 23789451 -118481993 - MIR SINE MIR -31 231 50 274 305 63 32 chr9 23791325 23791420 -118480024 + L2 LINE L2 3175 3272 0 400 239 34 0 chr9 23793076 23793164 -118478280 + MIR SINE MIR 76 166 -96 * 1067 228 28 39 chr9 23793151 23793405 -118478039 - MIR SINE MIR 0 262 12 285 379 122 2 chr9 23793544 23793765 -118477679 - MIR SINE MIR -2 260 16 255 107 48 48 chr9 23793767 23793870 -118477574 + T-rich Low_complexity Low_complexity 3 105 0 1865 98 106 4 chr9 23793883 23794148 -118477296 - AluSx SINE Alu -20 292 1 22 56 0 0 chr9 23794154 23794190 -118477254 + AT_rich Low_complexity Low_complexity 1 36 0 29 0 0 0 chr9 23794206 23794235 -118477209 + AT_rich Low_complexity Low_complexity 1 29 0 846 157 24 0 chr9 23794239 23794405 -118477039 - L1MA7 LINE L1 -9 6282 6113 194 222 0 0 chr9 23794888 23794924 -118476520 - L2 LINE L2 -15 3298 3263 1703 95 52 128 chr9 23795135 23795462 -118475982 - AluSg SINE Alu -7 303 2 979 285 107 38 chr9 23795620 23796153 -118475291 + L2 LINE L2 1961 2530 -784 39 22 0 0 chr9 23796220 23796266 -118475178 + AT_rich Low_complexity Low_complexity 1 46 0 25 31 0 0 chr9 23796488 23796520 -118474924 + AT_rich Low_complexity Low_complexity 1 32 0 1950 133 10 3 chr9 23796622 23796915 -118474529 + AluJb SINE Alu 1 295 -17 1474 122 0 5 chr9 23796929 23797134 -118474310 + AluSq SINE Alu 1 204 -109 1256 121 0 0 chr9 23797135 23797308 -118474136 + AluSq SINE Alu 129 301 -12 590 263 34 6 chr9 23797655 23797830 -118473614 - MLT1I LTR MaLR 0 409 230 2339 97 26 3 chr9 23797838 23798180 -118473264 - THE1A LTR MaLR 0 355 6 11622 100 9 0 chr9 23798185 23799751 -118471693 - THE1A-int LTR MaLR 0 1580 1 2579 92 3 14 chr9 23799751 23800110 -118471334 - THE1A LTR MaLR 0 355 1 246 265 15 0 chr9 23800173 23800241 -118471203 - MLT1J1 LTR MaLR -284 162 94 21 0 0 0 chr9 23800755 23800776 -118470668 + AT_rich Low_complexity Low_complexity 1 21 0 378 315 43 19 chr9 23800778 23800940 -118470504 + MIR SINE MIR 41 206 -56 311 270 87 56 chr9 23801776 23801902 -118469542 + MIR SINE MIR 24 153 -109 225 0 0 0 chr9 23802092 23802117 -118469327 + (GA)n Simple_repeat Simple_repeat 2 26 0 209 363 131 29 chr9 23802437 23802751 -118468693 - L2 LINE L2 -1905 1409 1064 1539 174 82 14 chr9 23805306 23805588 -118465856 - AluJo SINE Alu -11 301 1 226 86 0 0 chr9 23805719 23805754 -118465690 - L1P1 LINE L1 -427 5728 5694 3640 43 2 0 chr9 23805877 23806320 -118465124 + L1PA5 LINE L1 5711 6154 0 357 82 0 0 chr9 23806619 23806668 -118464776 + (CA)n Simple_repeat Simple_repeat 2 50 0 272 254 0 0 chr9 23806749 23806808 -118464636 + L2 LINE L2 3209 3267 -5 387 324 75 72 chr9 23807323 23807684 -118463760 - L2 LINE L2 -69 3203 2842 638 91 41 41 chr9 23808602 23808615 -118462829 - AluSg/x SINE Alu 0 310 298 1638 172 9 23 chr9 23808615 23808958 -118462486 - L1MA6 LINE L1 -1 6299 5962 638 91 41 41 chr9 23808958 23809065 -118462379 - AluSg/x SINE Alu -11 299 190 421 314 62 119 chr9 23809349 23809719 -118461725 - L2 LINE L2 0 3272 2924 331 325 96 10 chr9 23810003 23810212 -118461232 + MLT1K LTR MaLR 315 541 -47 387 291 104 15 chr9 23810231 23810365 -118461079 - MIR3 SINE MIR -38 170 25 619 86 0 0 chr9 23810381 23810474 -118460970 - AluY SINE Alu 0 311 219 204 278 252 46 chr9 23810604 23810755 -118460689 + MIR3 SINE MIR 21 202 -6 207 225 0 0 chr9 23810865 23810905 -118460539 - L2 LINE L2 -13 3300 3261 286 284 97 30 chr9 23811550 23811684 -118459760 + MIR SINE MIR 33 175 -87 257 305 48 9 chr9 23811904 23812009 -118459435 + MIR SINE MIR 59 167 -95 1848 157 17 14 chr9 23812961 23813255 -118458189 - AluJb SINE Alu -16 296 2 232 250 0 29 chr9 23814007 23814075 -118457369 - MER113 DNA MER1_type? -3 518 453 533 239 91 10 chr9 23814078 23814287 -118457157 - MER113 DNA MER1_type? -295 226 1 233 368 62 28 chr9 23814476 23814620 -118456824 - L2 LINE L2 -160 3112 2964 2270 102 10 3 chr9 23815143 23815447 -118455997 - AluSq SINE Alu -7 306 1 270 53 13 133 chr9 23815537 23815612 -118455832 - Charlie5 DNA MER1_type -77 2535 2470 1032 228 3 81 chr9 23815635 23815776 -118455668 - L1MA9 LINE L1 -89 6223 6072 2053 122 30 13 chr9 23815776 23816079 -118455365 - AluJb SINE Alu -4 308 1 1032 228 3 81 chr9 23816079 23816318 -118455126 - L1MA9 LINE L1 -240 6072 5873 888 206 109 0 chr9 23816321 23816588 -118454856 - Charlie5 DNA MER1_type -83 2529 2234 295 278 0 0 chr9 23816617 23816707 -118454737 - Charlie5 DNA MER1_type -2514 98 9 528 296 100 98 chr9 23817053 23817432 -118454012 - L3 LINE CR1 -288 1289 910 386 235 174 45 chr9 23817649 23817781 -118453663 - MER5A DNA MER1_type -1 188 40 2106 107 0 71 chr9 23818296 23818632 -118452812 + AluSx SINE Alu 1 312 0 21 36 0 0 chr9 23820370 23820398 -118451046 + AT_rich Low_complexity Low_complexity 1 28 0 223 250 0 47 chr9 23820791 23820855 -118450589 + MIR SINE MIR 75 135 -127 403 313 39 0 chr9 23821462 23821590 -118449854 - MIR SINE MIR -82 180 48 519 282 144 0 chr9 23822162 23822350 -118449094 - MIR SINE MIR 0 262 48 285 326 49 71 chr9 23822559 23822743 -118448701 - MER5A DNA MER1_type 0 189 10 221 272 281 0 chr9 23822762 23822986 -118448458 - L2 LINE L2 -816 2498 2212 429 323 72 20 chr9 23823151 23823346 -118448098 - MIR SINE MIR -37 225 21 2469 46 0 7 chr9 23824532 23824835 -118446609 + AluY SINE Alu 1 301 -10 281 357 41 6 chr9 23825117 23825288 -118446156 + MIR SINE MIR 36 212 -50 207 100 0 0 chr9 23825833 23825863 -118445581 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 885 276 138 27 chr9 23826050 23826600 -118444844 + MLT1L LTR MaLR 1 611 -4 1262 247 68 9 chr9 23826758 23827212 -118444232 + MER113 DNA MER1_type? 4 484 -37 240 167 0 0 chr9 23827514 23827562 -118443882 + (CA)n Simple_repeat Simple_repeat 1 48 0 1630 160 7 65 chr9 23828534 23828840 -118442604 - AluJb SINE Alu -20 292 5 36118 41 5 0 chr9 23828925 23834401 -118437043 - L1PA4 LINE L1 -2 6153 656 5146 43 9 1 chr9 23834399 23835093 -118436351 - L1P LINE L1 -3208 2938 2240 * 239 290 20 40 chr9 23835127 23835227 -118436217 - L2 LINE L2 -241 3031 2934 269 371 10 10 chr9 23835334 23835431 -118436013 - L2 LINE L2 0 3272 3176 406 257 30 10 chr9 23835438 23835539 -118435905 - L2 LINE L2 -31 3282 3180 396 343 34 56 chr9 23835587 23835911 -118435533 + L2 LINE L2 2661 2977 -337 335 236 0 9 chr9 23837254 23837364 -118434080 + (TATG)n Simple_repeat Simple_repeat 2 110 0 28 0 0 0 chr9 23837566 23837594 -118433850 + AT_rich Low_complexity Low_complexity 1 28 0 323 324 174 10 chr9 23837710 23837917 -118433527 - MIR SINE MIR -20 242 2 553 328 117 49 chr9 23837970 23838562 -118432882 - L2 LINE L2 -3 3269 2619 566 201 33 76 chr9 23838562 23838746 -118432698 + MER104 DNA MER2_type 2 177 -3 553 328 117 49 chr9 23838746 23838784 -118432660 - L2 LINE L2 -653 2619 2585 3213 216 38 20 chr9 23839242 23840131 -118431313 - L1MB8 LINE L1 -6 6172 5268 333 0 0 0 chr9 23840760 23840797 -118430647 + (CA)n Simple_repeat Simple_repeat 2 38 0 589 174 87 127 chr9 23841446 23841722 -118429722 - MLT1C LTR MaLR 0 467 203 185 233 23 0 chr9 23842009 23842052 -118429392 - MIR3 SINE MIR -3 205 162 434 18 18 0 chr9 23842226 23842281 -118429163 + (TG)n Simple_repeat Simple_repeat 1 56 0 21 57 0 0 chr9 23842716 23842751 -118428693 + AT_rich Low_complexity Low_complexity 1 35 0 279 79 0 0 chr9 23843735 23843773 -118427671 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 253 305 161 45 chr9 23843942 23844165 -118427279 - MIR SINE MIR 0 262 14 688 236 7 0 chr9 23844378 23844526 -118426918 - MLT1G1 LTR MaLR 0 595 447 449 264 104 35 chr9 23844607 23844877 -118426567 - MLT1G1 LTR MaLR -327 263 14 534 244 59 92 chr9 23844891 23845003 -118426441 + MIR SINE MIR 1 115 -147 1984 108 0 59 chr9 23845003 23845172 -118426272 - AluSx SINE Alu -24 288 143 2219 122 0 0 chr9 23845172 23845475 -118425969 - AluSg SINE Alu -7 303 1 1984 108 0 59 chr9 23845475 23845611 -118425833 - AluSx SINE Alu -169 143 1 534 244 59 92 chr9 23845611 23845769 -118425675 + MIR SINE MIR 115 262 0 602 274 105 9 chr9 23845870 23846089 -118425355 - MIR SINE MIR 0 262 23 257 332 174 32 chr9 23846118 23846371 -118425073 - L2 LINE L2 -556 2758 2470 277 56 0 0 chr9 23847500 23847536 -118423908 - 5S rRNA rRNA -85 36 1 200 35 35 0 chr9 23848020 23848049 -118423395 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 388 333 46 7 chr9 23849053 23849206 -118422238 + MIR3 SINE MIR 47 205 -3 235 268 124 0 chr9 23849623 23849720 -118421724 - MIR SINE MIR -8 254 146 649 253 49 58 chr9 23849976 23850284 -118421160 - L1ME3A LINE L1 -213 5957 5653 357 333 29 29 chr9 23850291 23850429 -118421015 - MIR SINE MIR -120 142 5 241 311 11 0 chr9 23851169 23851259 -118420185 - MLT1K LTR MaLR 0 588 498 964 208 25 38 chr9 23852120 23852360 -118419084 - MLT1E1 LTR MaLR -1 653 417 593 211 180 77 chr9 23852369 23852630 -118418814 - MLT1E1 LTR MaLR -327 299 12 1334 281 41 10 chr9 23853442 23853859 -118417585 - LTR16B LTR ERVL 0 464 35 274 268 14 0 chr9 23854430 23854501 -118416943 + MER94 DNA DNA 61 132 -2 764 279 156 46 chr9 23855394 23855935 -118415509 - L2 LINE L2 -1 3312 2713 188 279 144 19 chr9 23857059 23857163 -118414281 - MIR SINE MIR -71 137 21 276 91 0 0 chr9 23857355 23857399 -118414045 + (GA)n Simple_repeat Simple_repeat 1 44 0 602 288 52 48 chr9 23858087 23858316 -118413128 + MIR SINE MIR 18 247 -15 343 247 130 7 chr9 23859046 23859200 -118412244 + MIR SINE MIR 22 194 -68 433 254 26 36 chr9 23859574 23859696 -118411748 - MIR SINE MIR -63 145 38 314 127 0 16 chr9 23859844 23859907 -118411537 + (CAT)n Simple_repeat Simple_repeat 3 64 0 321 89 0 0 chr9 23860017 23860062 -118411382 + (CAT)n Simple_repeat Simple_repeat 1 45 0 840 220 136 28 chr9 23860073 23860287 -118411157 - MIR SINE MIR -21 241 5 7291 136 35 8 chr9 23860586 23862681 -118408763 - L1MA5A LINE L1 0 6300 4056 699 277 26 60 chr9 23862825 23863175 -118408269 + L3 LINE CR1 1143 1480 -97 355 287 28 0 chr9 23864068 23864176 -118407268 + MARNA DNA Mariner 11 121 -465 519 287 83 26 chr9 23864310 23864575 -118406869 + MARNA DNA Mariner 218 497 -89 697 308 72 20 chr9 23864778 23865178 -118406266 + L1MC4a LINE L1 5488 5908 -1900 934 162 27 0 chr9 23865223 23865371 -118406073 - Tigger2a DNA MER2_type 0 444 293 567 168 0 10 chr9 23865372 23865473 -118405971 - Tigger2a DNA MER2_type -327 107 8 23 0 0 0 chr9 23865582 23865605 -118405839 + AT_rich Low_complexity Low_complexity 1 23 0 2326 49 18 0 chr9 23865805 23866090 -118405354 - AluY SINE Alu -6 305 16 2181 123 0 0 chr9 23866304 23866613 -118404831 - AluSg SINE Alu -1 309 1 310 304 108 52 chr9 23867119 23867313 -118404131 + MIR SINE MIR 8 212 -50 286 317 83 7 chr9 23867471 23867616 -118403828 - MIR SINE MIR -7 255 100 358 277 151 15 chr9 23870111 23870322 -118401122 - MIR SINE MIR -15 247 12 2526 61 0 0 chr9 23870718 23871029 -118400415 - AluY SINE Alu 0 311 1 191 296 0 70 chr9 23871433 23871504 -118399940 - MIR SINE MIR -188 74 9 1019 166 12 0 chr9 23871531 23871694 -118399750 + FRAM SINE Alu 2 166 0 2176 77 33 0 chr9 23871921 23872216 -118399228 - AluSg SINE Alu 0 304 1 287 248 20 10 chr9 23872230 23872331 -118399113 - L1MC5 LINE L1 -30 7931 7830 1968 135 35 0 chr9 23873452 23873740 -118397704 + AluSq SINE Alu 1 298 -15 789 254 49 18 chr9 23874148 23874372 -118397072 - MIR SINE MIR 0 262 32 207 0 0 0 chr9 23874406 23874429 -118397015 + (GA)n Simple_repeat Simple_repeat 2 24 0 654 317 128 20 chr9 23877153 23877613 -118393831 - L2 LINE L2 0 3313 2804 1033 143 21 66 chr9 23878228 23878455 -118392989 + MLT1C LTR MaLR 6 223 -167 512 175 0 21 chr9 23878456 23878544 -118392900 + AluJ/FRAM SINE Alu 218 305 -7 1693 195 16 0 chr9 23878544 23878851 -118392593 + AluJo SINE Alu 1 312 0 1133 219 46 18 chr9 23878863 23879146 -118392298 + MLT1C LTR MaLR 169 459 -8 198 0 0 0 chr9 23879273 23879295 -118392149 + (T)n Simple_repeat Simple_repeat 1 22 0 1171 136 0 30 chr9 23879594 23879792 -118391652 - AluJo SINE Alu 0 312 121 538 276 70 89 chr9 23880153 23880511 -118390933 + MLT1H LTR MaLR 59 409 0 216 0 0 0 chr9 23881224 23881248 -118390196 + (T)n Simple_repeat Simple_repeat 1 24 0 695 284 96 0 chr9 23882060 23882257 -118389187 + MER58A DNA MER1_type 1 216 -8 261 221 13 13 chr9 23882385 23882462 -118388982 + (TA)n Simple_repeat Simple_repeat 2 78 0 383 316 31 48 chr9 23882463 23882691 -118388753 - L1ME LINE L1 -641 5480 5257 26 0 0 0 chr9 23882849 23882875 -118388569 + AT_rich Low_complexity Low_complexity 1 26 0 1535 191 9 86 chr9 23882911 23883340 -118388104 - L1MC3 LINE L1 0 7785 7390 * 3642 169 54 73 chr9 23883337 23884248 -118387196 - L1MC3 LINE L1 -621 7164 6272 285 333 14 57 chr9 23885344 23885485 -118385959 - MIR SINE MIR -80 182 48 207 336 59 34 chr9 23885481 23885600 -118385844 + L2 LINE L2 3191 3312 -1 * 278 295 87 58 chr9 23886442 23886615 -118384829 + L2 LINE L2 2625 2802 -512 290 324 6 41 chr9 23887317 23887487 -118383957 + HERVL LTR ERVL 5194 5357 -297 322 306 75 56 chr9 23887764 23888032 -118383412 + LTR16C LTR ERVL 125 397 -94 270 264 91 9 chr9 23888171 23888281 -118383163 + HAL1 LINE L1 1241 1359 -1148 786 244 188 36 chr9 23888336 23888729 -118382715 - HAL1 LINE L1 -651 1856 1404 263 208 19 0 chr9 23888758 23888811 -118382633 - HAL1 LINE L1 -1612 895 842 1488 271 89 29 chr9 23888826 23889095 -118382349 - L1ME LINE L1 -4426 1654 1403 180 0 0 0 chr9 23889095 23889115 -118382329 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1488 271 89 29 chr9 23889115 23889850 -118381594 - L1ME LINE L1 -4677 1403 713 2297 70 7 30 chr9 23889850 23890150 -118381294 + AluY SINE Alu 1 293 -18 1488 271 89 29 chr9 23890150 23890251 -118381193 - L1ME LINE L1 -5367 713 619 2298 85 3 25 chr9 23890251 23890568 -118380876 - AluSp SINE Alu -3 310 1 1488 271 89 29 chr9 23890568 23891000 -118380444 - L1ME LINE L1 -5461 619 42 276 372 15 15 chr9 23891235 23891372 -118380072 + L2 LINE L2 2933 3069 -203 1406 157 0 63 chr9 23891430 23891618 -118379826 + MLT1A1 LTR MaLR 127 296 -69 2382 78 3 0 chr9 23891618 23891914 -118379530 + AluY SINE Alu 1 297 -14 1406 157 0 63 chr9 23891914 23891980 -118379464 + MLT1A1 LTR MaLR 296 365 0 716 325 48 63 chr9 23892017 23892540 -118378904 + L2 LINE L2 2571 3081 -232 230 261 15 15 chr9 23892655 23892720 -118378724 + LTR33 LTR ERVL 75 139 -382 504 233 120 83 chr9 23892750 23893016 -118378428 + LTR33 LTR ERVL 238 513 -8 352 274 12 0 chr9 23893017 23893101 -118378343 + L2 LINE L2 3229 3313 0 363 297 102 0 chr9 23894659 23894787 -118376657 + L1MEd LINE L1 499 639 -5480 432 195 19 110 chr9 23894813 23894967 -118376477 - MER20 DNA MER1_type -75 144 5 549 75 252 28 chr9 23895041 23895175 -118376269 + FLAM_C SINE Alu 1 158 0 276 185 121 38 chr9 23895198 23895355 -118376089 + L1MEd LINE L1 700 869 -5250 897 262 148 15 chr9 23896458 23896790 -118374654 + L3b LINE CR1 1116 1491 -92 273 275 175 37 chr9 23897778 23897967 -118373477 - MIR SINE MIR -47 215 1 2400 85 3 0 chr9 23899974 23900281 -118371163 + AluY SINE Alu 1 308 -3 748 218 111 27 chr9 23900559 23900784 -118370660 + MIR SINE MIR 1 244 -18 732 229 66 60 chr9 23900806 23901107 -118370337 - L1ME1 LINE L1 -18 6148 5846 22 0 0 0 chr9 23901170 23901192 -118370252 + AT_rich Low_complexity Low_complexity 1 22 0 2451 99 47 63 chr9 23902075 23902297 -118369147 - L1PB2 LINE L1 -7 6144 5931 2436 58 3 0 chr9 23902297 23902592 -118368852 + AluY SINE Alu 1 296 -15 2451 99 47 63 chr9 23902592 23902812 -118368632 - L1PB2 LINE L1 -220 5931 5709 21 0 0 0 chr9 23902852 23902873 -118368571 + AT_rich Low_complexity Low_complexity 1 21 0 376 271 31 97 chr9 23902898 23903058 -118368386 - MIR SINE MIR -65 143 2 246 332 150 16 chr9 23903265 23903452 -118367992 + MIR SINE MIR 34 245 -17 409 355 30 6 chr9 23905151 23905317 -118366127 - MIR SINE MIR -72 190 21 257 253 71 39 chr9 23905885 23906067 -118365377 + L1ME4a LINE L1 5185 5372 -774 306 271 41 25 chr9 23906152 23906274 -118365170 + L1ME4a LINE L1 5480 5603 -518 1825 163 0 10 chr9 23906276 23906582 -118364862 + AluJb SINE Alu 1 303 -9 30 59 0 0 chr9 23906715 23906766 -118364678 + AT_rich Low_complexity Low_complexity 1 51 0 947 266 101 44 chr9 23906795 23907381 -118364063 - L1MC5 LINE L1 -64 7897 7279 570 265 33 20 chr9 23907499 23907767 -118363677 - L1MC4 LINE L1 -734 7227 6983 350 202 139 72 chr9 23907776 23907984 -118363460 + L1ME4a LINE L1 5713 5934 -187 23 0 0 0 chr9 23908205 23908228 -118363216 + AT_rich Low_complexity Low_complexity 1 23 0 375 41 0 0 chr9 23908440 23908489 -118362955 + (TG)n Simple_repeat Simple_repeat 2 50 0 216 343 112 15 chr9 23908712 23908846 -118362598 + MIR SINE MIR 110 256 -6 637 260 85 22 chr9 23908897 23909120 -118362324 + MIR SINE MIR 5 241 -21 1749 166 28 0 chr9 23910685 23911010 -118360434 - MLT2C2 LTR ERVL -126 338 5 1711 190 3 13 chr9 23911718 23912018 -118359426 - AluJo SINE Alu -15 297 1 255 226 160 38 chr9 23912868 23912919 -118358525 - L2 LINE L2 -16 3256 3213 2334 97 3 3 chr9 23912919 23913228 -118358216 + AluSx SINE Alu 1 309 -3 255 226 160 38 chr9 23913228 23913282 -118358162 - L2 LINE L2 -59 3213 3138 428 318 62 11 chr9 23914057 23914233 -118357211 - MIR SINE MIR -58 204 20 325 287 72 50 chr9 23914212 23914393 -118357051 + MIR SINE MIR 29 213 -49 * 27 62 0 0 chr9 23914785 23914833 -118356611 + AT_rich Low_complexity Low_complexity 1 48 0 358 196 21 10 chr9 23914843 23914940 -118356504 + (TATATG)n Simple_repeat Simple_repeat 3 100 0 382 259 107 0 chr9 23914974 23915086 -118356358 + MIR SINE MIR 139 262 0 39258 58 6 1 chr9 23916360 23922404 -118349040 + L1PA5 LINE L1 76 6149 -5 26 50 0 0 chr9 23922729 23922769 -118348675 + AT_rich Low_complexity Low_complexity 1 40 0 27 92 0 0 chr9 23922870 23922946 -118348498 + AT_rich Low_complexity Low_complexity 1 76 0 336 267 86 43 chr9 23923015 23923202 -118348242 - L1MC4 LINE L1 -142 7900 7706 274 258 82 0 chr9 23923496 23923593 -118347851 - L1ME4a LINE L1 -83 6038 5934 6696 240 23 29 chr9 23923625 23925210 -118346234 + L1PA11 LINE L1 2 1595 -5989 267 93 0 0 chr9 23925210 23925253 -118346191 + (CCA)n Simple_repeat Simple_repeat 1 43 0 6696 240 23 29 chr9 23925253 23926476 -118344968 + L1PA11 LINE L1 1595 3599 -3985 15556 173 31 19 chr9 23926477 23928906 -118342538 + L1PA11 LINE L1 3700 6187 -1425 354 23 0 0 chr9 23928906 23928949 -118342495 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 15556 173 31 19 chr9 23928949 23930393 -118341051 + L1PA11 LINE L1 6187 7612 0 2725 104 17 0 chr9 23930395 23930816 -118340628 - L1PA10 LINE L1 -86 6082 5655 348 329 53 0 chr9 23930888 23931040 -118340404 - L1ME4a LINE L1 -413 5708 5549 2160 137 0 0 chr9 23931224 23931517 -118339927 + AluSx SINE Alu 3 295 -17 2467 66 0 10 chr9 23931764 23932067 -118339377 + AluY SINE Alu 1 300 -11 12377 198 24 15 chr9 23932504 23936144 -118335300 - L1PA13 LINE L1 -3 6811 3156 560 93 35 0 chr9 23936150 23936236 -118335208 - L1PA13 LINE L1 -4509 2278 2190 2028 150 37 8 chr9 23936247 23936601 -118334843 + THE1B LTR MaLR 1 364 0 9964 114 21 53 chr9 23936601 23938234 -118333210 + THE1B-int LTR MaLR 1 1580 0 2077 155 29 0 chr9 23938234 23938583 -118332861 + THE1B LTR MaLR 1 359 -5 7114 216 87 6 chr9 23938588 23940234 -118331210 - L1PA13 LINE L1 -4604 2183 405 601 278 17 0 chr9 23941537 23941717 -118329727 - L1MC4 LINE L1 -1220 6822 6640 582 255 129 43 chr9 23941712 23942533 -118328911 - L1MC4 LINE L1 -1193 6615 5800 * 279 93 0 0 chr9 23942564 23942607 -118328837 + (GA)n Simple_repeat Simple_repeat 2 44 0 250 181 42 14 chr9 23943927 23943999 -118327445 - L1MA7 LINE L1 0 6291 6218 896 246 96 20 chr9 23944026 23944466 -118326978 - Charlie4a DNA MER1_type -35 473 1 30 77 0 0 chr9 23944663 23944728 -118326716 + AT_rich Low_complexity Low_complexity 1 65 0 528 322 7 46 chr9 23944854 23945137 -118326307 - L1MEd LINE L1 -5446 673 402 378 318 31 49 chr9 23945210 23945433 -118326011 - L1MEd LINE L1 -5888 231 13 359 306 33 66 chr9 23945461 23945644 -118325800 - MIR SINE MIR -66 196 20 292 363 8 8 chr9 23945706 23945830 -118325614 + L2 LINE L2 3190 3313 0 216 341 0 49 chr9 23948974 23949056 -118322388 - L2 LINE L2 0 3313 3236 2445 74 3 0 chr9 23949065 23949363 -118322081 + AluY SINE Alu 1 299 -12 883 288 0 5 chr9 23950179 23950384 -118321060 - MIR SINE MIR -57 205 2 494 233 182 17 chr9 23950516 23950692 -118320752 - MIR SINE MIR -57 205 1 26 0 0 0 chr9 23950896 23950922 -118320522 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr9 23952044 23952067 -118319377 + AT_rich Low_complexity Low_complexity 1 23 0 588 223 14 7 chr9 23952072 23952220 -118319224 - MER113 DNA MER1_type? -27 494 346 24 85 0 0 chr9 23952339 23952398 -118319046 + AT_rich Low_complexity Low_complexity 1 59 0 512 228 256 5 chr9 23952548 23952763 -118318681 + MER5C DNA MER1_type 1 269 -55 306 369 8 0 chr9 23952920 23953042 -118318402 + L2 LINE L2 3190 3312 -1 303 305 17 8 chr9 23953312 23953430 -118318014 - MLT1I LTR MaLR -10 399 281 509 282 15 68 chr9 23953477 23953683 -118317761 - MLT1I LTR MaLR -214 195 1 282 29 0 0 chr9 23954230 23954265 -118317179 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 773 321 73 45 chr9 23955365 23955723 -118315721 + L2 LINE L2 2902 3269 -44 6747 210 13 10 chr9 23955763 23957184 -118314260 + L1M1 LINE L1 9 1434 -6131 4592 110 47 22 chr9 23957187 23957957 -118313487 + L1MA2 LINE L1 5516 6304 0 211 209 0 0 chr9 23957966 23958009 -118313435 + (TGAA)n Simple_repeat Simple_repeat 3 45 0 23 68 0 0 chr9 23959551 23959595 -118311849 + AT_rich Low_complexity Low_complexity 1 44 0 43457 45 2 1 chr9 23959595 23965742 -118305702 - L1PA4 LINE L1 -3 6152 1 29 47 0 0 chr9 23965802 23965845 -118305599 + AT_rich Low_complexity Low_complexity 1 43 0 189 403 0 14 chr9 23965885 23965957 -118305487 - L2 LINE L2 -53 3219 3149 412 308 51 40 chr9 23965963 23966469 -118304975 - L1MEd LINE L1 -3219 2910 2399 851 227 26 16 chr9 23966470 23966664 -118304780 + MLT1F1 LTR MaLR 372 567 0 287 270 67 34 chr9 23966677 23966855 -118304589 - L1MEd LINE L1 -4969 1150 967 322 311 58 48 chr9 23967011 23967217 -118304227 - L1MEd LINE L1 -5492 627 420 327 94 62 0 chr9 23967394 23967490 -118303954 + (TA)n Simple_repeat Simple_repeat 2 103 0 25 0 0 0 chr9 23967494 23967519 -118303925 + AT_rich Low_complexity Low_complexity 1 25 0 418 226 118 0 chr9 23968184 23968286 -118303158 + L1PA11 LINE L1 1 114 -7467 * 1838 259 121 50 chr9 23968283 23968702 -118302742 + L1PA11 LINE L1 318 705 -6876 222 91 0 0 chr9 23968702 23968735 -118302709 + (TTG)n Simple_repeat Simple_repeat 3 35 0 1819 100 4 8 chr9 23968735 23968991 -118302453 - AluY SINE Alu -50 261 7 2152 101 3 13 chr9 23968991 23969163 -118302281 - AluSg SINE Alu -7 303 134 2256 102 7 0 chr9 23969163 23969456 -118301988 - AluSx SINE Alu -17 295 1 2152 101 3 13 chr9 23969456 23969589 -118301855 - AluSg SINE Alu -176 134 1 1838 259 121 50 chr9 23969589 23969938 -118301506 + L1PA11 LINE L1 704 1138 -6443 666 146 114 0 chr9 23969919 23970042 -118301402 + L1PA11 LINE L1 3199 3335 -4249 * 2094 85 5 170 chr9 23970042 23970454 -118300990 - LTR14B LTR ERVK 0 608 1 18681 153 11 26 chr9 23970458 23974266 -118297178 + L1PA11 LINE L1 3332 7081 -531 384 0 22 0 chr9 23974225 23974271 -118297173 - L1PA8A LINE L1 -469 5662 5616 * 3609 110 34 2 chr9 23974319 23974880 -118296564 + L1PA11 LINE L1 7048 7625 0 241 311 32 47 chr9 23974901 23975178 -118296266 + L1M4 LINE L1 4387 4659 -1487 322 252 178 9 chr9 23975386 23975493 -118295951 - L2 LINE L2 -1 3312 3188 389 245 66 0 chr9 23975710 23975816 -118295628 - MER5C DNA MER1_type -211 113 1 253 241 36 12 chr9 23977528 23977611 -118293833 + T-rich Low_complexity Low_complexity 4 88 0 288 0 0 0 chr9 23978383 23978415 -118293029 + (T)n Simple_repeat Simple_repeat 1 32 0 280 323 85 0 chr9 23978979 23979109 -118292335 + MIR SINE MIR 112 252 -10 202 326 61 45 chr9 23979401 23979533 -118291911 + L3 LINE CR1 1414 1547 -30 418 343 72 81 chr9 23979584 23980027 -118291417 + L2 LINE L2 2812 3250 -22 205 296 97 61 chr9 23981192 23981388 -118290056 + L2 LINE L2 3084 3286 -27 189 107 0 0 chr9 23982294 23982322 -118289122 + (TG)n Simple_repeat Simple_repeat 2 29 0 829 169 87 49 chr9 23982605 23982788 -118288656 + MIR SINE MIR 67 256 -6 189 214 0 0 chr9 23982792 23982834 -118288610 + CT-rich Low_complexity Low_complexity 3 44 0 655 219 20 7 chr9 23983368 23983514 -118287930 - MIR SINE MIR -16 246 99 261 263 79 0 chr9 23983777 23983853 -118287591 + L2 LINE L2 3186 3267 -5 180 0 0 0 chr9 23984219 23984239 -118287205 + (T)n Simple_repeat Simple_repeat 1 20 0 214 205 0 0 chr9 23984553 23984592 -118286852 + T-rich Low_complexity Low_complexity 1 39 0 392 237 122 0 chr9 23985546 23985685 -118285759 - MER103 DNA DNA -2 164 9 580 270 75 6 chr9 23986129 23986303 -118285141 + MIR SINE MIR 41 226 -36 259 392 64 0 chr9 23986562 23986687 -118284757 - L2 LINE L2 -14 3258 3126 8492 191 39 11 chr9 23986840 23989567 -118281877 - L1PA16 LINE L1 -8 6861 4212 2448 153 24 14 chr9 23989567 23989991 -118281453 - MSTA LTR MaLR 0 428 1 9217 173 20 2 chr9 23989991 23991613 -118279831 - MSTA-int LTR MaLR 0 1651 1 2541 163 9 0 chr9 23991613 23992037 -118279407 - MSTA LTR MaLR 0 428 1 8492 191 39 11 chr9 23992037 23992130 -118279314 - L1PA16 LINE L1 -2656 4213 3959 551 77 0 0 chr9 23992488 23992566 -118278878 + L1PA7 LINE L1 6074 6151 -3 1899 261 38 5 chr9 23993487 23994093 -118277351 - L1 LINE L1 -2889 3257 2632 * 13243 149 16 151 chr9 23994088 23997605 -118273839 - L1PA16 LINE L1 -3660 3189 143 795 185 49 0 chr9 23997866 23998050 -118273394 - L1MB3 LINE L1 -1 6182 5990 2029 255 60 0 chr9 23998051 23998514 -118272930 + L1PA13 LINE L1 436 926 -5861 890 171 67 0 chr9 23998514 23998678 -118272766 + MSTB LTR MaLR 250 424 -2 8812 182 22 4 chr9 23998679 24000299 -118271145 + MSTA-int LTR MaLR 2 1651 0 1993 166 79 22 chr9 24000299 24000702 -118270742 + MSTA LTR MaLR 1 426 -2 9802 230 57 37 chr9 24000709 24002997 -118268447 - L1 LINE L1 -1008 5840 3733 3166 192 35 1 chr9 24002997 24003684 -118267760 - L1MA4 LINE L1 -1 6299 5590 9802 230 57 37 chr9 24003684 24006029 -118265415 - L1 LINE L1 -3115 3733 1436 473 264 26 26 chr9 24006928 24007083 -118264361 - L2 LINE L2 0 3313 3159 541 302 63 36 chr9 24007622 24007844 -118263600 + LTR16C LTR ERVL 179 406 -85 430 247 21 59 chr9 24008187 24008373 -118263071 - L1MC5 LINE L1 -741 7220 7042 264 306 8 33 chr9 24008432 24008553 -118262891 + CT-rich Low_complexity Low_complexity 3 120 0 501 291 70 57 chr9 24008558 24008696 -118262748 - L1MC4 LINE L1 -891 6917 6782 1691 216 14 3 chr9 24008696 24009057 -118262387 + MLT1A1 LTR MaLR 1 365 0 501 291 70 57 chr9 24009057 24009316 -118262128 - L1MC4 LINE L1 -1026 6782 6554 21 57 0 0 chr9 24009326 24009361 -118262083 + AT_rich Low_complexity Low_complexity 1 35 0 326 320 141 51 chr9 24009380 24009792 -118261652 - L1MC4a LINE L1 -1386 6422 5974 440 14 58 0 chr9 24009827 24009896 -118261548 + (TCTA)n Simple_repeat Simple_repeat 2 74 0 241 226 65 0 chr9 24009912 24009974 -118261470 - L1MC4a LINE L1 -1869 5939 5874 427 257 224 6 chr9 24009975 24010158 -118261286 - L1MC4a LINE L1 -1993 5815 5593 1859 194 12 9 chr9 24010165 24010511 -118260933 - MLT1A1 LTR MaLR 0 365 19 892 268 31 7 chr9 24010543 24010830 -118260614 - L1MC4a LINE L1 -2219 5589 5296 374 226 0 81 chr9 24010838 24010962 -118260482 - L1ME1 LINE L1 -5 6161 6048 595 302 99 62 chr9 24010972 24011029 -118260415 - L1MC4a LINE L1 -839 5307 5254 1938 142 139 21 chr9 24011029 24011410 -118260034 + MSTA LTR MaLR 1 426 -2 595 302 99 62 chr9 24011410 24011440 -118260004 - L1MC4a LINE L1 -892 5254 5227 1949 123 18 7 chr9 24011440 24011725 -118259719 - AluY SINE Alu 0 311 24 595 302 99 62 chr9 24011725 24012140 -118259304 - L1MC4a LINE L1 -919 5227 4785 22 35 0 0 chr9 24012146 24012175 -118259269 + AT_rich Low_complexity Low_complexity 1 29 0 458 274 123 25 chr9 24012711 24012796 -118258648 - MER2 DNA MER2_type -1 344 269 1802 194 11 5 chr9 24012796 24013167 -118258277 + L1PA16 LINE L1 5794 6166 0 458 274 123 25 chr9 24013167 24013285 -118258159 - MER2 DNA MER2_type -76 269 121 6701 200 81 40 chr9 24013289 24014832 -118256612 + L1M1 LINE L1 15 1621 -5944 1175 243 71 4 chr9 24014853 24015133 -118256311 - AluJb SINE Alu -3 299 1 586 298 108 48 chr9 24015228 24015897 -118255547 - L1MC4a LINE L1 -3316 2830 2122 473 318 35 20 chr9 24016355 24016553 -118254891 + MIR SINE MIR 13 213 -49 342 321 111 12 chr9 24016710 24016979 -118254465 - L2 LINE L2 -328 2985 2687 346 350 65 32 chr9 24017009 24017286 -118254158 - L2 LINE L2 -795 2519 2234 24 0 0 0 chr9 24118234 24118258 -118153186 + AT_rich Low_complexity Low_complexity 1 24 0 242 302 79 36 chr9 24118720 24118859 -118152585 - MIR SINE MIR -10 252 108 378 307 150 29 chr9 24119553 24119700 -118151744 + L1M4 LINE L1 4698 4826 -1320 438 20 0 0 chr9 24119700 24119751 -118151693 + (TG)n Simple_repeat Simple_repeat 2 52 0 378 307 150 29 chr9 24119751 24120082 -118151362 + L1M4 LINE L1 4826 5234 -912 24 53 0 0 chr9 24120168 24120206 -118151238 + AT_rich Low_complexity Low_complexity 1 38 0 2005 94 71 10 chr9 24120365 24120673 -118150771 - L1PA4 LINE L1 -3 6152 5826 1421 72 2 13 chr9 24120673 24120883 -118150561 + L1PA4 LINE L1 5691 5862 -293 1223 292 70 19 chr9 24120883 24121396 -118150048 - ERVL-C1 LTR ERVL -5225 539 1 1084 269 6 55 chr9 24121396 24121761 -118149683 - MLT2C1 LTR ERVL 0 397 51 648 168 77 28 chr9 24122834 24122977 -118148467 + MLT1B LTR MaLR 3 152 -238 1565 194 47 10 chr9 24122981 24123338 -118148106 - AluJb SINE Alu 0 370 3 897 220 12 75 chr9 24123339 24123594 -118147850 + MLT1B LTR MaLR 152 390 0 1178 253 25 52 chr9 24123980 24124388 -118147056 + MLT2C1 LTR ERVL 1 397 0 1223 292 70 19 chr9 24124388 24124901 -118146543 + ERVL-C1 LTR ERVL 1 539 -5225 1812 56 3 2 chr9 24124901 24125143 -118146301 - L1PA4 LINE L1 -292 5863 5655 * 2412 77 15 3 chr9 24125107 24125433 -118146011 + L1PA4 LINE L1 5826 6155 0 490 307 7 0 chr9 24125433 24125570 -118145874 + ERVL-C1 LTR ERVL 563 700 -5064 970 256 12 8 chr9 24125672 24125922 -118145522 - MLT1D LTR MaLR -5 500 250 573 150 9 62 chr9 24126022 24126135 -118145309 - MLT1D LTR MaLR -398 107 1 817 223 93 40 chr9 24126281 24126640 -118144804 - L1ME3A LINE L1 -13 6151 5768 730 263 62 0 chr9 24126649 24126843 -118144601 - MER58A DNA MER1_type 0 224 19 483 255 166 0 chr9 24126853 24127010 -118144434 - L1ME3A LINE L1 -424 5746 5564 328 120 0 0 chr9 24127071 24127121 -118144323 + MADE1 DNA Mariner 1 50 -30 22 0 0 0 chr9 24128214 24128236 -118143208 + AT_rich Low_complexity Low_complexity 1 22 0 216 336 9 82 chr9 24129680 24129790 -118141654 - MIR3 SINE MIR 0 208 107 3301 42 2 0 chr9 24130835 24131237 -118140207 - L1PA6 LINE L1 -5 6149 5747 6780 65 8 4 chr9 24131762 24133288 -118138156 - L1PA7 LINE L1 -13 6141 4612 201 175 0 0 chr9 24134686 24134726 -118136718 + (TGGA)n Simple_repeat Simple_repeat 1 40 0 198 313 41 95 chr9 24134992 24135139 -118136305 + MIR SINE MIR 47 185 -77 480 315 27 12 chr9 24136516 24136703 -118134741 + MLT1H LTR MaLR 23 198 -351 183 167 0 0 chr9 24136793 24136835 -118134609 + (TCTA)n Simple_repeat Simple_repeat 2 43 0 348 274 74 47 chr9 24137123 24137313 -118134131 - L2 LINE L2 -4 3309 3115 811 339 31 45 chr9 24137642 24138095 -118133349 - L2 LINE L2 -246 3026 2574 317 241 37 37 chr9 24138159 24138267 -118133177 - MLT1H LTR MaLR -10 539 432 1216 151 18 49 chr9 24138442 24138667 -118132777 - AluJo SINE Alu -21 291 74 22 35 0 0 chr9 24138671 24138700 -118132744 + AT_rich Low_complexity Low_complexity 1 29 0 264 365 52 17 chr9 24138854 24138969 -118132475 - L2 LINE L2 -20 3252 3134 24 0 0 0 chr9 24140032 24140056 -118131388 + AT_rich Low_complexity Low_complexity 1 24 0 568 342 141 18 chr9 24140418 24141026 -118130418 + L2 LINE L2 1882 2564 -750 291 217 36 24 chr9 24141565 24141648 -118129796 - L1ME3A LINE L1 -526 5595 5512 6324 34 22 0 chr9 24141649 24142413 -118129031 + L1PA4 LINE L1 5372 6152 -3 259 338 66 5 chr9 24142431 24142629 -118128815 - L1ME3A LINE L1 -2282 5526 5317 378 307 150 29 chr9 24142696 24143027 -118128417 - L1ME3A LINE L1 -912 5234 4826 438 20 0 0 chr9 24143027 24143078 -118128366 + (CA)n Simple_repeat Simple_repeat 2 52 0 378 307 150 29 chr9 24143078 24143225 -118128219 - L1ME3A LINE L1 -1320 4826 4698 242 302 79 36 chr9 24143919 24144058 -118127386 + MIR SINE MIR 108 252 -10 24 0 0 0 chr9 24144520 24144544 -118126900 + AT_rich Low_complexity Low_complexity 1 24 0 360 274 53 26 chr9 24146413 24146526 -118124918 - L2 LINE L2 -20 3293 3178 233 304 72 0 chr9 24147133 24147202 -118124242 + L2 LINE L2 3189 3262 -10 1823 151 19 29 chr9 24147328 24147640 -118123804 + AluSx SINE Alu 3 311 -1 297 366 0 52 chr9 24147717 24147851 -118123593 - L2 LINE L2 -179 3093 2967 691 220 33 7 chr9 24147865 24148015 -118123429 - MLT1G1 LTR MaLR 0 595 442 428 233 128 39 chr9 24148025 24148205 -118123239 - MLT1G1 LTR MaLR -244 286 91 347 401 75 22 chr9 24148478 24149127 -118122317 - L2 LINE L2 -582 2732 2049 2154 96 0 40 chr9 24150082 24150385 -118121059 - AluSg SINE Alu -19 291 1 348 297 109 30 chr9 24150627 24150829 -118120615 - MIR SINE MIR -44 218 1 449 228 0 39 chr9 24150870 24150997 -118120447 - L1MB8 LINE L1 -7 6171 6050 42647 33 21 2 chr9 24151166 24157196 -118114248 - L1PA2 LINE L1 -4 6151 5 201 324 26 8 chr9 24157703 24157848 -118113596 + MIR SINE MIR 77 249 -13 * 205 255 21 0 chr9 24157817 24157864 -118113580 + L2 LINE L2 3264 3311 -2 249 327 87 72 chr9 24158060 24158268 -118113176 + MIR SINE MIR 47 257 -5 294 298 101 36 chr9 24158465 24158633 -118112811 + MIR SINE MIR 84 262 0 540 354 91 31 chr9 24161694 24162314 -118109130 + L2 LINE L2 2616 3272 0 2077 118 3 0 chr9 24162356 24162645 -118108799 + AluSx SINE Alu 18 307 -5 656 308 39 5 chr9 24162811 24163019 -118108425 + MIR SINE MIR 14 228 -34 6517 144 108 93 chr9 24164694 24166364 -118105080 - pTR5 LTR ERV1 0 2438 743 200 299 172 23 chr9 24166786 24166873 -118104571 + MIR SINE MIR 63 162 -100 360 293 38 9 chr9 24166919 24167025 -118104419 - MIR SINE MIR -1 261 153 255 346 45 23 chr9 24167576 24167709 -118103735 + MIR SINE MIR 81 216 -46 214 322 217 0 chr9 24168314 24168429 -118103015 + L2 LINE L2 3133 3272 0 411 294 147 28 chr9 24168440 24168651 -118102793 + MIR SINE MIR 8 243 -19 1078 154 11 0 chr9 24168940 24169128 -118102316 + L1PB1 LINE L1 3 192 -6671 13815 160 47 22 chr9 24169135 24169625 -118101819 + L1PB1 LINE L1 634 1111 -5756 2159 98 0 73 chr9 24169625 24169953 -118101491 - AluY SINE Alu -7 304 1 13815 160 47 22 chr9 24169953 24174981 -118096463 + L1PB1 LINE L1 1111 6309 -558 2221 108 0 3 chr9 24174981 24175276 -118096168 + AluY SINE Alu 1 294 -17 13815 160 47 22 chr9 24175276 24175662 -118095782 + L1PB1 LINE L1 6309 6684 -183 278 116 23 23 chr9 24175669 24175755 -118095689 + (TA)n Simple_repeat Simple_repeat 1 86 0 370 318 23 81 chr9 24176863 24177121 -118094323 + MIR SINE MIR 14 256 -6 198 268 144 31 chr9 24177271 24177368 -118094076 - MIR SINE MIR -63 145 38 1441 213 24 71 chr9 24177648 24178057 -118093387 - MLT1B LTR MaLR 0 390 1 924 180 47 43 chr9 24178437 24178648 -118092796 - MER20 DNA MER1_type -3 216 5 696 302 117 11 chr9 24178683 24179041 -118092403 + MLT1L LTR MaLR 220 615 0 207 338 75 25 chr9 24179404 24179564 -118091880 + L2 LINE L2 1934 2101 -1213 195 191 95 48 chr9 24179683 24179767 -118091677 + MIR SINE MIR 117 204 -58 275 293 71 30 chr9 24180585 24180684 -118090760 + MIR SINE MIR 64 166 -96 1781 180 0 10 chr9 24182785 24183090 -118088354 + AluJb SINE Alu 1 302 -10 188 349 198 0 chr9 24184245 24184351 -118087093 - L3 LINE CR1 -16 1561 1435 296 333 0 0 chr9 24184546 24184627 -118086817 - MIR3 SINE MIR -20 188 108 775 210 0 107 chr9 24184813 24185046 -118086398 + MER3 DNA MER1_type 2 209 0 227 295 49 0 chr9 24185188 24185249 -118086195 - MIR SINE MIR -107 101 38 2316 137 54 10 chr9 24185468 24185876 -118085568 + L1PA15 LINE L1 5721 6146 -19 315 62 0 0 chr9 24185915 24185963 -118085481 + L1PA15 LINE L1 6112 6159 -6 263 315 14 0 chr9 24187342 24187415 -118084029 + GA-rich Low_complexity Low_complexity 3 76 0 353 302 139 45 chr9 24187419 24187958 -118083486 + L1M4 LINE L1 4802 5391 -755 756 89 0 0 chr9 24188116 24188245 -118083199 + AluY SINE Alu 181 309 0 219 292 45 34 chr9 24188278 24188367 -118083077 + L2 LINE L2 3136 3225 -47 232 279 135 18 chr9 24188599 24188710 -118082734 + MIR SINE MIR 98 221 -41 290 250 132 35 chr9 24190377 24190521 -118080923 - L2 LINE L2 -925 2389 2232 200 280 151 11 chr9 24190732 24190825 -118080619 + MER5B DNA MER1_type 1 106 -72 195 278 0 19 chr9 24190837 24190891 -118080553 + MER5A DNA MER1_type 136 188 -1 418 242 178 13 chr9 24192769 24192926 -118078518 + MIR SINE MIR 48 230 -32 403 233 48 0 chr9 24193147 24193250 -118078194 - MIR SINE MIR -102 160 53 350 174 29 0 chr9 24193947 24194016 -118077428 + MIR SINE MIR 70 140 -122 244 237 31 103 chr9 24194222 24194319 -118077125 - MIR3 SINE MIR -104 104 15 2187 121 0 6 chr9 24195662 24195975 -118075469 + AluSx SINE Alu 1 311 -1 862 255 22 0 chr9 24196592 24196776 -118074668 + MER5A DNA MER1_type 2 189 0 2505 38 3 35 chr9 24197538 24197851 -118073593 - AluY SINE Alu -8 303 1 479 258 81 53 chr9 24198280 24198455 -118072989 - MIR SINE MIR -34 228 45 2017 141 39 30 chr9 24198455 24198816 -118072628 - THE1B LTR MaLR 0 364 1 479 258 81 53 chr9 24198816 24198849 -118072595 - MIR SINE MIR -217 45 14 341 241 48 60 chr9 24198854 24199020 -118072424 - MER20B DNA MER1_type 0 783 620 1097 220 59 43 chr9 24199020 24199343 -118072101 + L1ME2 LINE L1 5826 6153 -11 1165 283 86 14 chr9 24199537 24200025 -118071419 - MER20B DNA MER1_type -238 545 23 21 36 0 0 chr9 24200387 24200415 -118071029 + AT_rich Low_complexity Low_complexity 1 28 0 25 51 0 0 chr9 24201161 24201200 -118070244 + AT_rich Low_complexity Low_complexity 1 39 0 1147 246 40 63 chr9 24201865 24202222 -118069222 - L1MEc LINE L1 -5932 464 116 1969 149 3 0 chr9 24202222 24202532 -118068912 - AluSx SINE Alu 0 313 3 1147 246 40 63 chr9 24202532 24202603 -118068841 - L1MEc LINE L1 -6280 116 45 1497 265 135 15 chr9 24202706 24203246 -118068198 - MLT1E2 LTR MaLR 0 626 22 183 316 0 86 chr9 24203677 24203794 -118067650 + L2 LINE L2 2960 3066 -206 234 367 0 13 chr9 24204006 24204085 -118067359 + MER5A DNA MER1_type 68 145 -44 235 308 0 0 chr9 24204867 24204919 -118066525 - L2 LINE L2 -88 3184 3133 515 295 112 19 chr9 24205021 24205046 -118066398 + L1ME1 LINE L1 3224 3245 -2901 1772 154 3 25 chr9 24205046 24205332 -118066112 + AluJo SINE Alu 1 280 -32 203 79 26 0 chr9 24205334 24205372 -118066072 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 515 295 112 19 chr9 24205372 24205586 -118065858 + L1ME1 LINE L1 3245 3438 -2708 495 0 0 0 chr9 24205586 24205641 -118065803 + (TA)n Simple_repeat Simple_repeat 2 56 0 515 295 112 19 chr9 24205641 24205773 -118065671 + L1ME1 LINE L1 3438 3634 -2512 3284 258 80 20 chr9 24205797 24207585 -118063859 + L1ME1 LINE L1 3708 5594 -572 718 167 48 12 chr9 24207575 24207743 -118063701 - L1PA15-16 LINE L1 -4577 2272 2099 * 991 266 14 3 chr9 24207742 24208032 -118063412 + L1ME1 LINE L1 5597 5889 -277 983 343 34 38 chr9 24208044 24208656 -118062788 + L1PA16 LINE L1 788 1397 -6177 406 266 53 0 chr9 24208777 24208871 -118062573 + L1PA16 LINE L1 2083 2181 -5400 11020 221 27 61 chr9 24209083 24210614 -118060830 + L1PA16 LINE L1 2183 3765 -3819 2325 98 3 0 chr9 24210614 24210921 -118060523 + AluSq SINE Alu 3 310 -3 11020 221 27 61 chr9 24210921 24212251 -118059193 + L1PA16 LINE L1 3765 5139 -2445 450 0 0 0 chr9 24212251 24212301 -118059143 + (CA)n Simple_repeat Simple_repeat 2 51 0 11020 221 27 61 chr9 24212301 24213293 -118058151 + L1PA16 LINE L1 5139 6163 -1421 542 55 0 0 chr9 24213293 24213366 -118058078 - AluY SINE Alu -13 297 225 1239 56 25 6 chr9 24213366 24213526 -118057918 - AluY SINE Alu -148 163 1 11020 221 27 61 chr9 24213526 24213871 -118057573 + L1PA16 LINE L1 6161 6453 -1131 1506 179 22 8 chr9 24213881 24214149 -118057295 + AluJo SINE Alu 11 282 -30 420 111 0 0 chr9 24214154 24214217 -118057227 + (TA)n Simple_repeat Simple_repeat 2 64 0 316 196 0 72 chr9 24214184 24214281 -118057163 + L1MC4 LINE L1 6614 6703 -1339 5141 148 27 1 chr9 24214293 24215420 -118056024 + L1PA16 LINE L1 6443 7595 -9 234 0 0 0 chr9 24215423 24215449 -118055995 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 810 206 17 127 chr9 24215455 24215746 -118055698 + L1ME1 LINE L1 5878 6136 -30 2182 89 4 0 chr9 24215871 24216151 -118055293 + AluSp SINE Alu 1 281 -32 949 78 7 7 chr9 24216154 24216295 -118055149 + (GAA)n Simple_repeat Simple_repeat 2 142 0 221 290 65 47 chr9 24217023 24217130 -118054314 - L2 LINE L2 -8 3305 3197 307 196 0 0 chr9 24217929 24217980 -118053464 - L2 LINE L2 -1 3312 3262 259 297 127 8 chr9 24219634 24219752 -118051692 + MIR SINE MIR 82 213 -49 375 327 41 8 chr9 24220580 24220737 -118050707 - MIR SINE MIR -62 146 39 207 0 0 0 chr9 24221320 24221343 -118050101 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1284 152 0 0 chr9 24221363 24221554 -118049890 - AluJo SINE Alu -121 191 1 267 339 61 26 chr9 24221742 24221857 -118049587 - L2 LINE L2 0 3272 3154 299 242 10 30 chr9 24222375 24222474 -118048970 - L1MEc LINE L1 -6260 136 40 9346 180 94 48 chr9 24222554 24224346 -118047098 - L1MCa LINE L1 -3947 2479 771 234 0 0 0 chr9 24224346 24224372 -118047072 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1944 147 3 0 chr9 24224374 24224660 -118046784 - AluSq SINE Alu -26 287 1 9346 180 94 48 chr9 24224660 24225357 -118046087 - L1MCa LINE L1 -5655 771 3 2312 168 70 2 chr9 24225417 24225816 -118045628 + MSTB LTR MaLR 1 426 0 290 317 172 17 chr9 24225918 24226098 -118045346 - MIR SINE MIR -19 243 36 28 0 0 0 chr9 24226638 24226666 -118044778 + AT_rich Low_complexity Low_complexity 1 28 0 203 286 20 0 chr9 24227387 24227436 -118044008 + L2 LINE L2 3251 3300 -13 22 35 0 0 chr9 24227824 24227853 -118043591 + AT_rich Low_complexity Low_complexity 1 29 0 918 276 86 20 chr9 24228029 24228380 -118043064 + LTR16B LTR ERVL 88 461 -3 362 310 107 42 chr9 24228794 24229149 -118042295 - L2 LINE L2 -1210 2104 1727 224 223 33 10 chr9 24230333 24230405 -118041039 - MIR SINE MIR -65 143 73 294 91 15 30 chr9 24230961 24231027 -118040417 + (TA)n Simple_repeat Simple_repeat 2 66 0 432 259 23 15 chr9 24232740 24232871 -118038573 + MIR SINE MIR 111 242 -20 341 322 68 17 chr9 24233765 24234057 -118037387 + L1ME4a LINE L1 5548 5854 -267 1949 252 40 1 chr9 24235359 24236016 -118035428 - L1ME LINE L1 -367 5799 5122 885 195 96 44 chr9 24236034 24236306 -118035138 + pTR5 LTR ERV1 743 1028 -1410 4639 79 48 154 chr9 24236385 24237309 -118034135 + LTR12 LTR ERV1 1 826 0 36177 91 7 24 chr9 24237309 24242774 -118028670 + HERV9 LTR ERV1 1 4978 -3421 3080 113 15 12 chr9 24242784 24243476 -118027968 + HERV9 LTR ERV1 504 8399 0 3785 82 300 3 chr9 24243564 24244201 -118027243 + LTR12 LTR ERV1 1 826 0 3560 232 54 26 chr9 24244210 24245365 -118026079 - L1ME LINE L1 -1034 5112 3926 2873 249 107 8 chr9 24245380 24246619 -118024825 - L1ME LINE L1 -2462 3684 2324 232 138 46 15 chr9 24246635 24246700 -118024744 - L1M4 LINE L1 -1768 4378 4312 352 358 30 0 chr9 24246715 24246849 -118024595 - MIR3 SINE MIR -6 202 65 382 168 168 21 chr9 24247266 24247361 -118024083 - MIR SINE MIR -66 196 88 686 266 100 3 chr9 24247447 24247816 -118023628 + MER113 DNA MER1_type? 74 478 -43 188 330 50 40 chr9 24247994 24248094 -118023350 + MER5B DNA MER1_type 77 177 -1 195 100 0 0 chr9 24249576 24249606 -118021838 + (CCG)n Simple_repeat Simple_repeat 2 31 0 395 257 81 113 chr9 24249618 24249999 -118021445 - L1M2 LINE L1 -5707 1142 774 642 122 0 10 chr9 24250459 24250557 -118020887 - AluJb SINE Alu -26 286 190 269 277 0 0 chr9 24255598 24255663 -118015781 + (TATATG)n Simple_repeat Simple_repeat 2 66 0 24 67 0 0 chr9 24256366 24256411 -118015033 + AT_rich Low_complexity Low_complexity 1 45 0 320 265 46 53 chr9 24256727 24256878 -118014566 - L2 LINE L2 0 3313 3164 342 291 101 25 chr9 24257009 24257167 -118014277 + L3 LINE CR1 1254 1423 -154 282 308 67 0 chr9 24257649 24257753 -118013691 + MIR SINE MIR 78 188 -74 1383 290 117 17 chr9 24258107 24258645 -118012799 - MLT2E LTR ERVL -18 610 19 4834 276 44 13 chr9 24259016 24260626 -118010818 - ERVL LTR ERVL -401 5363 3629 4746 317 47 30 chr9 24260742 24262809 -118008635 - ERVL LTR ERVL -2275 3489 1386 1286 269 101 6 chr9 24262941 24263279 -118008165 - MLT2E LTR ERVL -249 379 10 702 201 40 0 chr9 24263456 24263605 -118007839 - L1MD2 LINE L1 -18 6341 6187 802 280 54 51 chr9 24263668 24263982 -118007462 - L2 LINE L2 -609 2705 2391 421 282 85 16 chr9 24264218 24264654 -118006790 + L1M4 LINE L1 2922 3387 -2759 24 91 0 0 chr9 24265047 24265113 -118006331 + AT_rich Low_complexity Low_complexity 1 66 0 360 111 0 0 chr9 24265255 24265309 -118006135 + (TG)n Simple_repeat Simple_repeat 1 54 0 284 276 47 63 chr9 24265314 24265441 -118006003 - MIR SINE MIR -117 145 21 613 248 35 45 chr9 24265659 24265861 -118005583 + MER63A DNA MER1_type 1 200 -10 292 263 26 0 chr9 24265883 24265959 -118005485 - MLT1L LTR MaLR -332 283 206 361 237 146 56 chr9 24266092 24266362 -118005082 + L1M4 LINE L1 4022 4334 -1812 480 132 40 0 chr9 24266377 24266529 -118004915 + (TA)n Simple_repeat Simple_repeat 1 158 0 25 31 0 0 chr9 24266541 24266573 -118004871 + AT_rich Low_complexity Low_complexity 1 32 0 407 281 30 115 chr9 24266604 24266874 -118004570 + L1M4 LINE L1 4330 4576 -1570 623 304 0 39 chr9 24266905 24267109 -118004335 + MIR SINE MIR 36 231 -31 927 285 102 55 chr9 24267483 24267788 -118003656 - L2 LINE L2 0 3313 3024 1705 145 75 34 chr9 24267788 24268146 -118003298 + THE1C LTR MaLR 3 375 0 927 285 102 55 chr9 24268146 24268653 -118002791 - L2 LINE L2 -289 3024 2458 1434 193 19 4 chr9 24268686 24268955 -118002489 + AluJb SINE Alu 20 292 -20 2099 293 140 19 chr9 24269026 24270036 -118001408 - L2 LINE L2 -962 2352 1221 392 329 82 12 chr9 24270089 24270259 -118001185 - LTR33 LTR ERVL -339 182 1 22 56 0 0 chr9 24270406 24270442 -118001002 + AT_rich Low_complexity Low_complexity 1 36 0 2055 105 54 3 chr9 24270840 24271134 -118000310 + AluSc SINE Alu 1 309 0 21 0 0 0 chr9 24271731 24271752 -117999692 + AT_rich Low_complexity Low_complexity 1 21 0 354 298 40 53 chr9 24271991 24272142 -117999302 + MIR SINE MIR 29 177 -85 351 307 84 22 chr9 24272630 24272809 -117998635 - MIR SINE MIR -25 237 48 243 215 0 0 chr9 24272932 24272997 -117998447 + (TATATG)n Simple_repeat Simple_repeat 6 70 0 28 0 0 0 chr9 24273141 24273169 -117998275 + AT_rich Low_complexity Low_complexity 1 28 0 2316 91 7 0 chr9 24275659 24275955 -117995489 + AluSp SINE Alu 1 298 -15 1741 172 3 3 chr9 24276196 24276481 -117994963 - AluJo SINE Alu -23 289 5 384 327 59 45 chr9 24276709 24276911 -117994533 - MLT1I LTR MaLR -177 232 28 202 318 0 0 chr9 24277145 24277211 -117994233 + (ATG)n Simple_repeat Simple_repeat 3 68 0 226 335 171 24 chr9 24277849 24278013 -117993431 - MIR SINE MIR -49 213 26 7315 236 82 58 chr9 24278490 24281136 -117990308 - L1M4 LINE L1 -1197 5760 3179 1602 228 0 0 chr9 24281136 24281426 -117990018 - AluJb SINE Alu -19 293 4 7315 236 82 58 chr9 24281426 24282227 -117989217 - L1M4 LINE L1 -3778 3179 2199 207 0 0 0 chr9 24282227 24282250 -117989194 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7315 236 82 58 chr9 24282250 24282830 -117988614 - L1M4 LINE L1 -4758 2199 1634 813 181 7 0 chr9 24282831 24282992 -117988452 - AluJb SINE Alu 0 308 147 731 221 0 0 chr9 24283003 24283183 -117988261 - FLAM_C SINE Alu 0 182 3 2461 261 115 37 chr9 24283185 24284178 -117987266 - L1M4 LINE L1 -5202 1657 588 249 108 0 0 chr9 24284273 24284310 -117987134 + (CA)n Simple_repeat Simple_repeat 1 37 0 360 83 0 0 chr9 24284642 24284690 -117986754 - L1PA4 LINE L1 -252 5903 5856 2113 28 0 0 chr9 24284690 24284938 -117986506 + L1PA4 LINE L1 5903 6153 -2 180 111 0 0 chr9 24285248 24285275 -117986169 + (GA)n Simple_repeat Simple_repeat 1 27 0 987 139 0 13 chr9 24287032 24287183 -117984261 - MER50 LTR ERV1 -23 711 563 1844 24 0 0 chr9 24287183 24287394 -117984050 - L1P LINE L1 -1834 4312 4102 * 5590 47 0 0 chr9 24287393 24288093 -117983351 + L1P LINE L1 4314 5013 -1133 433 277 124 33 chr9 24288095 24288337 -117983107 - L2 LINE L2 -1 3312 3049 218 218 18 0 chr9 24290066 24290121 -117981323 + T-rich Low_complexity Low_complexity 2 57 0 6402 25 0 0 chr9 24290122 24290866 -117980578 - L1PA3 LINE L1 -3 6152 5409 322 323 124 21 chr9 24291253 24291439 -117980005 + MIR SINE MIR 2 206 -56 503 305 93 49 chr9 24291444 24291690 -117979754 - MIR SINE MIR -5 257 1 2669 268 53 40 chr9 24292037 24292813 -117978631 - L1PA13 LINE L1 -6001 786 1 229 333 67 0 chr9 24293023 24293128 -117978316 + MIR SINE MIR 15 126 -136 4258 223 30 15 chr9 24293626 24295222 -117976222 - L1PA13 LINE L1 -3817 2980 1326 21 0 0 0 chr9 24295936 24295957 -117975487 + AT_rich Low_complexity Low_complexity 1 21 0 342 357 23 50 chr9 24296337 24296595 -117974849 + L1MDa LINE L1 48 298 -6242 1096 249 60 68 chr9 24297154 24297776 -117973668 + L1MDa LINE L1 910 1526 -5017 570 214 38 0 chr9 24297794 24297953 -117973491 + L1MDa LINE L1 1567 1731 -4809 1468 251 69 16 chr9 24297955 24298204 -117973240 + L1MDa LINE L1 2839 3073 -3467 2107 150 0 0 chr9 24298204 24298511 -117972933 + AluSx SINE Alu 1 307 -5 1468 251 69 16 chr9 24298511 24298811 -117972633 + L1MDa LINE L1 3073 3417 -3123 16339 116 10 33 chr9 24298912 24302277 -117969167 - L1P3 LINE L1 -2765 3696 337 22 0 0 0 chr9 24302452 24302474 -117968970 + AT_rich Low_complexity Low_complexity 1 22 0 298 289 141 8 chr9 24303452 24303573 -117967871 + MIR SINE MIR 36 172 -90 1376 182 42 45 chr9 24303624 24303892 -117967552 - L1M3 LINE L1 -571 5600 5332 2016 164 37 8 chr9 24303892 24304271 -117967173 + MLT1B LTR MaLR 1 390 0 1376 182 42 45 chr9 24304271 24304389 -117967055 - L1M3 LINE L1 -839 5332 5215 1903 146 0 28 chr9 24304925 24305246 -117966198 - AluSx SINE Alu 0 312 1 1655 329 93 40 chr9 24305323 24306533 -117964911 + L3 LINE CR1 297 1571 -6 706 211 197 0 chr9 24307157 24307309 -117964135 - MER5A DNA MER1_type -6 183 2 234 263 25 0 chr9 24308158 24308238 -117963206 + (CATATA)n Simple_repeat Simple_repeat 6 87 0 195 353 40 27 chr9 24308597 24308747 -117962697 - L2 LINE L2 -170 3102 2951 333 93 0 0 chr9 24308997 24309051 -117962393 + (TTCC)n Simple_repeat Simple_repeat 3 56 0 318 167 0 0 chr9 24311819 24311879 -117959565 + C-rich Low_complexity Low_complexity 3 62 0 207 323 204 14 chr9 24311920 24312140 -117959304 - MIR SINE MIR 0 262 1 2329 25 4 4 chr9 24312526 24312806 -117958638 - L1PA5 LINE L1 -1 6153 5874 1747 20 5 0 chr9 24312806 24313008 -117958436 + L1PA5 LINE L1 5673 5875 -280 5955 124 28 3 chr9 24313871 24314831 -117956613 + Tigger3b DNA MER2_type 247 1230 -1 1792 131 39 26 chr9 24315170 24315475 -117955969 - AluSx SINE Alu -3 309 1 187 296 0 37 chr9 24316031 24316085 -117955359 + L3 LINE CR1 1520 1571 -6 2131 84 36 4 chr9 24316406 24316681 -117954763 + AluY SINE Alu 7 290 -21 367 326 42 37 chr9 24317353 24317543 -117953901 + MIR SINE MIR 66 256 -6 249 221 0 73 chr9 24317517 24317585 -117953859 - L2 LINE L2 0 3313 3251 * 201 355 51 43 chr9 24319145 24319401 -117952043 + L2 LINE L2 2143 2400 -914 6627 85 0 0 chr9 24319583 24321003 -117950441 - L1PA8 LINE L1 -7 6165 4743 420 20 0 0 chr9 24321073 24321122 -117950322 + (CA)n Simple_repeat Simple_repeat 1 49 0 192 125 0 0 chr9 24321870 24321902 -117949542 + (TC)n Simple_repeat Simple_repeat 2 33 0 252 59 0 0 chr9 24321902 24321936 -117949508 + (CA)n Simple_repeat Simple_repeat 1 34 0 11905 95 9 2 chr9 24322077 24322126 -117949318 + L1PA7 LINE L1 3651 3698 -2461 2037 134 13 7 chr9 24322126 24322433 -117949011 + AluSc SINE Alu 1 309 0 11905 95 9 2 chr9 24322433 24324896 -117946548 + L1PA7 LINE L1 3698 6159 0 503 305 93 49 chr9 24325662 24325908 -117945536 + MIR SINE MIR 1 257 -5 322 323 124 21 chr9 24325913 24326099 -117945345 - MIR SINE MIR -56 206 2 4752 96 24 63 chr9 24326486 24327278 -117944166 + L1PA8 LINE L1 5409 6169 -3 4972 149 61 8 chr9 24327282 24328405 -117943039 + L1PA15 LINE L1 4976 6163 -2 220 247 31 62 chr9 24328508 24328605 -117942839 - L2 LINE L2 -62 3251 3158 533 371 20 33 chr9 24328740 24329193 -117942251 - L2 LINE L2 -157 3156 2717 321 117 70 0 chr9 24329245 24329373 -117942071 + (TA)n Simple_repeat Simple_repeat 1 137 0 358 290 11 0 chr9 24329373 24329466 -117941978 + L2 LINE L2 2566 2659 -655 244 113 65 16 chr9 24329466 24329531 -117941913 + (TTATA)n Simple_repeat Simple_repeat 1 68 0 1759 164 35 35 chr9 24329565 24329938 -117941506 - L1MB1 LINE L1 -10 6158 5786 4818 197 19 28 chr9 24329989 24330078 -117941366 - L1MB1 LINE L1 -376 5792 5704 2397 50 0 0 chr9 24330078 24330390 -117941054 + AluY SINE Alu 1 312 0 4818 197 19 28 chr9 24330390 24331911 -117939533 - L1MB1 LINE L1 -464 5704 4195 874 144 0 78 chr9 24331930 24332110 -117939334 - L1M3 LINE L1 -551 5620 5455 1098 212 22 22 chr9 24332122 24332188 -117939256 - L1MB1 LINE L1 -1960 4186 4121 1321 186 110 15 chr9 24332188 24332516 -117938928 + MER46B DNA MER2_type 1 234 -2 1098 212 22 22 chr9 24332516 24332723 -117938721 - L1MB1 LINE L1 -2024 4122 3913 1373 198 44 47 chr9 24332738 24333101 -117938343 + MER67D LTR ERV1 153 514 0 202 263 105 21 chr9 24333103 24333178 -117938266 - L2 LINE L2 -1254 2060 1974 2249 191 19 5 chr9 24333178 24333598 -117937846 - MSTB LTR MaLR 0 426 1 202 263 105 21 chr9 24333598 24333617 -117937827 - L2 LINE L2 -1340 1974 1958 1043 314 115 47 chr9 24334555 24335086 -117936358 - MLT1G1 LTR MaLR -24 571 5 230 319 26 26 chr9 24335089 24335202 -117936242 - MLT1G1-int LTR MaLR -11 1724 1612 1901 158 153 5 chr9 24335240 24335613 -117935831 + MSTA LTR MaLR 1 428 0 2181 132 24 16 chr9 24335800 24336172 -117935272 - THE1C LTR MaLR 0 375 1 424 250 0 61 chr9 24336769 24336901 -117934543 - MLT1G1-int LTR MaLR -793 578 455 338 313 17 0 chr9 24337070 24337185 -117934259 - MLT1G1-int LTR MaLR -1614 121 5 543 296 126 5 chr9 24337203 24337402 -117934042 - MLT1G1 LTR MaLR -15 580 358 23 0 0 0 chr9 24337536 24337559 -117933885 + AT_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chr9 24337646 24337683 -117933761 + AT_rich Low_complexity Low_complexity 1 37 0 23543 33 0 0 chr9 24337683 24341310 -117930134 - L1PA4 LINE L1 -7 6148 2522 10748 51 0 2 chr9 24341310 24342682 -117928762 + L1PA4 LINE L1 1144 2512 -3634 3093 218 7 56 chr9 24342679 24343501 -117927943 - L1P LINE L1 -1155 4991 4210 * 2088 120 76 12 chr9 24343501 24343843 -117927601 + THE1B LTR MaLR 1 364 0 11367 106 4 6 chr9 24343843 24345426 -117926018 + THE1B-int LTR MaLR 1 1580 0 1005 127 100 0 chr9 24345429 24345579 -117925865 + THE1B LTR MaLR 4 168 -196 16379 146 7 13 chr9 24345587 24347884 -117923560 + L1PA10 LINE L1 2423 4734 -1434 225 65 0 0 chr9 24347884 24347915 -117923529 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 16379 146 7 13 chr9 24347915 24348551 -117922893 + L1PA10 LINE L1 4734 5373 -795 2021 140 0 16 chr9 24348551 24348866 -117922578 + AluSg SINE Alu 1 310 0 16379 146 7 13 chr9 24348866 24349628 -117921816 + L1PA10 LINE L1 5373 6159 -9 3142 261 14 14 chr9 24349633 24350473 -117920971 - L1P LINE L1 -2792 3354 2512 2269 97 0 13 chr9 24350473 24350784 -117920660 + AluY SINE Alu 1 307 -4 3142 261 14 14 chr9 24350784 24350913 -117920531 - L1P LINE L1 -3633 2513 2385 21 0 0 0 chr9 24351062 24351083 -117920361 + AT_rich Low_complexity Low_complexity 1 21 0 320 309 82 82 chr9 24351126 24351430 -117920014 + L2 LINE L2 2550 2853 -461 282 304 0 0 chr9 24351503 24351582 -117919862 + L2 LINE L2 2994 3072 -241 281 393 65 0 chr9 24351609 24351777 -117919667 - L2 LINE L2 -1723 1591 1413 2036 260 123 28 chr9 24352162 24352974 -117918470 - L1ME1 LINE L1 -18 6148 5260 500 246 14 90 chr9 24353054 24353331 -117918113 - L1ME1 LINE L1 -1081 5065 4810 536 101 13 0 chr9 24353341 24353420 -117918024 + MADE1 DNA Mariner 1 80 0 2469 242 97 63 chr9 24353422 24354825 -117916619 - L1ME1 LINE L1 -1610 4536 3086 12967 147 40 18 chr9 24355746 24358110 -117913334 + Tigger1 DNA MER2_type 2 2418 0 21 57 0 0 chr9 24358110 24358145 -117913299 + AT_rich Low_complexity Low_complexity 1 35 0 337 178 51 68 chr9 24358223 24358294 -117913150 + L1M4 LINE L1 3129 3199 -2947 1520 220 13 32 chr9 24358294 24358672 -117912772 - MLT1A2 LTR MaLR 0 374 4 337 178 51 68 chr9 24358672 24358718 -117912726 + L1M4 LINE L1 3199 3244 -2902 673 155 0 0 chr9 24359082 24359185 -117912259 - AluSq/x SINE Alu -210 103 1 494 158 32 21 chr9 24359193 24359288 -117912156 - MLT1G1 LTR MaLR -499 96 1 277 308 50 12 chr9 24359289 24359451 -117911993 + L1ME1 LINE L1 5489 5664 -2144 4917 166 43 21 chr9 24359557 24360454 -117910990 + MER21A LTR ERV1 9 925 -6 21 0 0 0 chr9 24360501 24360522 -117910922 + AT_rich Low_complexity Low_complexity 1 21 0 367 215 51 63 chr9 24361009 24361167 -117910277 + L1ME1 LINE L1 5990 6145 -21 634 208 49 6 chr9 24361171 24361354 -117910090 + L1M4 LINE L1 2807 2997 -3149 240 111 0 0 chr9 24361355 24361391 -117910053 + (TTTA)n Simple_repeat Simple_repeat 3 38 0 635 210 0 0 chr9 24361391 24361515 -117909929 - FRAM SINE Alu -30 146 23 580 251 13 18 chr9 24361523 24361750 -117909694 + L1M4 LINE L1 3003 3228 -2918 1482 234 63 35 chr9 24362525 24363016 -117908428 - MLT1D LTR MaLR 0 505 1 37 0 0 0 chr9 24363139 24363176 -117908268 + AT_rich Low_complexity Low_complexity 1 37 0 404 329 48 16 chr9 24365219 24365427 -117906017 + MER20B DNA MER1_type 3 219 0 599 292 43 53 chr9 24367557 24367838 -117903606 - MLT1J LTR MaLR -231 280 3 35 41 0 0 chr9 24367974 24368023 -117903421 + AT_rich Low_complexity Low_complexity 1 49 0 565 269 23 50 chr9 24368180 24368399 -117903045 + MIR SINE MIR 7 219 -43 225 363 12 0 chr9 24369265 24369345 -117902099 - L2 LINE L2 -49 3264 3184 642 258 22 29 chr9 24369696 24370060 -117901384 - MLT1I LTR MaLR -2 407 1 34 0 6 41 chr9 24370157 24370254 -117901190 + AT_rich Low_complexity Low_complexity 1 50 0 516 237 143 63 chr9 24370299 24370609 -117900835 - MLT1J LTR MaLR -8 607 172 22 0 0 0 chr9 24371466 24371488 -117899956 + AT_rich Low_complexity Low_complexity 1 22 0 593 230 199 11 chr9 24371755 24371946 -117899498 - MIR SINE MIR -4 258 32 2338 270 53 76 chr9 24371980 24373103 -117898341 + L2 LINE L2 2195 3313 0 398 375 118 16 chr9 24373162 24373466 -117897978 + L2 LINE L2 2934 3268 -4 229 280 0 0 chr9 24373469 24373519 -117897925 + Tigger3(Golem) DNA MER2_type 1 50 -2979 190 164 36 0 chr9 24373688 24373743 -117897701 + (TA)n Simple_repeat Simple_repeat 1 57 0 307 336 16 56 chr9 24374476 24374601 -117896843 - MIR SINE MIR -70 138 19 185 343 225 11 chr9 24375718 24376251 -117895193 + L2 LINE L2 2025 2671 -643 1393 199 11 31 chr9 24376452 24376739 -117894705 + AluJo SINE Alu 1 281 -31 564 291 24 35 chr9 24376892 24377104 -117894340 + MIR SINE MIR 55 262 0 229 195 0 0 chr9 24377166 24377207 -117894237 + MIR SINE MIR 212 252 -10 187 407 23 0 chr9 24378712 24378798 -117892646 + L2 LINE L2 3185 3272 0 5705 163 25 9 chr9 24378836 24379956 -117891488 - L1MC1 LINE L1 -9 6324 5186 229 268 96 22 chr9 24380113 24380214 -117891230 - MER5A DNA MER1_type -48 141 21 743 244 157 14 chr9 24382721 24382938 -117888506 + MIR SINE MIR 4 251 -11 270 158 36 17 chr9 24383527 24383600 -117887844 + L1ME3 LINE L1 6092 6166 0 712 209 20 0 chr9 24384176 24384329 -117887115 - L1PB4 LINE L1 -2 6154 5999 26 0 0 0 chr9 24385517 24385543 -117885901 + AT_rich Low_complexity Low_complexity 1 26 0 2152 49 0 81 chr9 24386014 24386363 -117885081 + AluY SINE Alu 1 324 0 2405 99 15 46 chr9 24387110 24387522 -117883922 - L1MA2 LINE L1 0 6304 5906 543 346 0 36 chr9 24387687 24387924 -117883520 - MIR SINE MIR 0 262 38 504 309 61 6 chr9 24388365 24388546 -117882898 + MIR SINE MIR 2 192 -70 42136 52 4 2 chr9 24388550 24393898 -117877546 + L1P LINE L1 4 5363 -783 1076 286 40 6 chr9 24494063 24494523 -117776921 - L1MC4 LINE L1 -98 7710 7222 3791 122 16 21 chr9 24494526 24495142 -117776302 - L1PA13 LINE L1 -4 6159 5547 1448 240 128 30 chr9 24495143 24495706 -117775738 - L1MC4 LINE L1 -961 7081 6464 186 209 0 0 chr9 24496133 24496176 -117775268 + GA-rich Low_complexity Low_complexity 5 47 0 254 245 0 0 chr9 24499318 24499371 -117772073 + MSTD LTR MaLR 2 54 -342 * 393 216 0 0 chr9 24499369 24499443 -117772001 - MSTD LTR MaLR -272 124 51 * 1004 241 96 25 chr9 24499423 24499532 -117771912 + MSTD LTR MaLR 51 151 -245 2398 92 0 0 chr9 24499532 24499838 -117771606 - AluSg SINE Alu -4 306 1 1004 241 96 25 chr9 24499838 24500051 -117771393 + MSTD LTR MaLR 151 396 0 2287 266 24 17 chr9 24500052 24500798 -117770646 + MSTD-int LTR MaLR 107 835 -816 2170 248 102 0 chr9 24500872 24501393 -117770051 + MSTD-int LTR MaLR 1159 1732 -3 932 202 126 60 chr9 24501399 24501735 -117769709 + MLT1A1 LTR MaLR 4 365 0 1891 198 19 0 chr9 24503204 24503563 -117767881 - MER47A DNA MER2_type 0 366 1 237 217 72 0 chr9 24503731 24503800 -117767644 - MIR SINE MIR -10 252 179 203 228 0 35 chr9 24504062 24504119 -117767325 + GA-rich Low_complexity Low_complexity 1 55 0 1867 121 0 11 chr9 24505622 24505894 -117765550 + AluSx SINE Alu 7 275 -37 231 286 55 0 chr9 24505961 24506052 -117765392 + L1ME2 LINE L1 259 354 -6209 411 317 73 31 chr9 24506532 24506819 -117764625 + L1ME2 LINE L1 825 1123 -5249 822 289 96 47 chr9 24506833 24507014 -117764430 + L1ME2 LINE L1 1041 1212 -5351 186 43 0 0 chr9 24507014 24507037 -117764407 + (CAA)n Simple_repeat Simple_repeat 2 24 0 822 289 96 47 chr9 24507037 24507735 -117763709 + L1ME2 LINE L1 1212 2118 -4445 1548 325 50 21 chr9 24507757 24509038 -117762406 - L1MEc LINE L1 -5006 1390 73 2548 234 109 55 chr9 24509069 24510459 -117760985 + L1ME2 LINE L1 4275 5754 -648 1608 88 0 0 chr9 24510474 24510689 -117760755 - L1PA8 LINE L1 -1947 4199 3985 7692 110 8 3 chr9 24510690 24512660 -117758784 + L1PA8 LINE L1 4193 6179 0 1347 255 13 83 chr9 24512660 24513202 -117758242 + L1ME2 LINE L1 5785 6288 -112 658 192 54 36 chr9 24513203 24513370 -117758074 + MER3 DNA MER1_type 2 124 -85 240 284 0 0 chr9 24513415 24513489 -117757955 + L1ME1 LINE L1 6088 6161 -5 521 325 46 16 chr9 24513904 24514098 -117757346 - MLT1I LTR MaLR -33 376 177 1990 136 0 0 chr9 24514335 24514644 -117756800 + AluSx SINE Alu 3 311 0 216 97 0 0 chr9 24515718 24515749 -117755695 + (TG)n Simple_repeat Simple_repeat 2 32 0 216 86 0 0 chr9 24516144 24516179 -117755265 + (GA)n Simple_repeat Simple_repeat 2 36 0 2013 147 0 0 chr9 24516639 24516931 -117754513 + AluSx SINE Alu 6 297 -15 375 265 180 32 chr9 24518407 24518596 -117752848 - MLT1J LTR MaLR -61 450 234 521 259 21 28 chr9 24519106 24519249 -117752195 + MIR SINE MIR 1 142 -120 301 234 43 21 chr9 24520452 24520546 -117750898 + MIR SINE MIR 110 205 -57 436 292 67 58 chr9 24521623 24521863 -117749581 + MIR SINE MIR 19 260 -2 294 219 41 8 chr9 24522051 24522174 -117749270 + (TA)n Simple_repeat Simple_repeat 2 128 0 408 290 125 27 chr9 24522666 24522890 -117748554 - MIR SINE MIR -4 258 13 429 305 122 64 chr9 24523099 24523427 -117748017 + L3 LINE CR1 1173 1519 -58 743 195 5 80 chr9 24523524 24523724 -117747720 + MLT1A1 LTR MaLR 1 185 -180 885 223 64 32 chr9 24523731 24523951 -117747493 - MLT1A1 LTR MaLR -13 352 126 22 0 0 0 chr9 24524475 24524497 -117746947 + AT_rich Low_complexity Low_complexity 1 22 0 2064 149 5 27 chr9 24524627 24524995 -117746449 - MER46B DNA MER2_type -1 235 1 2570 55 3 0 chr9 24526638 24526947 -117744497 - AluY SINE Alu -1 310 1 414 0 0 0 chr9 24527244 24527290 -117744154 + (TTTA)n Simple_repeat Simple_repeat 4 49 0 2037 55 0 12 chr9 24527290 24527543 -117743901 - AluY SINE Alu -32 279 30 220 306 144 69 chr9 24529194 24529354 -117742090 + MIR SINE MIR 21 192 -70 285 98 0 0 chr9 24529373 24529414 -117742030 + (T)n Simple_repeat Simple_repeat 1 41 0 362 360 34 17 chr9 24530080 24530258 -117741186 - MER5A DNA MER1_type -2 187 7 2167 100 0 53 chr9 24530812 24531133 -117740311 + AluSc SINE Alu 1 304 -5 288 338 0 0 chr9 24532541 24532621 -117738823 - MIR SINE MIR -84 124 45 436 285 51 7 chr9 24532766 24532903 -117738541 + MIR SINE MIR 26 168 -94 381 250 32 70 chr9 24535192 24535348 -117736096 + MIR SINE MIR 57 206 -56 261 0 0 0 chr9 24537501 24537530 -117733914 + (CAA)n Simple_repeat Simple_repeat 2 30 0 485 226 0 7 chr9 24537689 24537826 -117733618 + CT-rich Low_complexity Low_complexity 1 136 0 2464 75 128 8 chr9 24537833 24538233 -117733211 - LTR7 LTR ERV1 -2 448 1 2274 106 50 13 chr9 24538233 24538609 -117732835 - HERVH LTR ERV1 0 7713 7324 1343 143 19 0 chr9 24538609 24538825 -117732619 - HERVH LTR ERV1 -1894 5819 5600 3678 149 9 2 chr9 24538826 24539397 -117732047 - HERVH LTR ERV1 -2564 5149 4575 1317 104 0 0 chr9 24539394 24539577 -117731867 - HERVH LTR ERV1 -3043 4670 4488 * 3533 75 20 6 chr9 24539579 24540074 -117731370 - HERVH LTR ERV1 -3720 3993 3492 868 154 20 0 chr9 24540064 24540213 -117731231 - HERVH LTR ERV1 -4423 3290 3139 * 15209 99 27 8 chr9 24540206 24542478 -117728966 - HERVH LTR ERV1 -4726 2987 672 3747 100 0 2 chr9 24542445 24542964 -117728480 - HERVH LTR ERV1 -7195 518 1 * 2368 89 127 15 chr9 24542966 24543369 -117728075 - LTR7 LTR ERV1 -2 448 1 687 250 6 6 chr9 24543705 24543861 -117727583 - MLT1D LTR MaLR 0 505 350 6110 155 31 38 chr9 24543861 24544124 -117727320 - L1M2 LINE L1 -619 5672 5409 2141 132 0 3 chr9 24544124 24544428 -117727016 - AluSg SINE Alu -7 303 1 6110 155 31 38 chr9 24544428 24545727 -117725717 - L1M2 LINE L1 -882 5409 4133 206 310 0 17 chr9 24545760 24545818 -117725626 + L2 LINE L2 2995 3051 -262 246 348 107 27 chr9 24545986 24546098 -117725346 + L2 LINE L2 3143 3263 -9 182 265 15 0 chr9 24548335 24548403 -117723041 + (TATATG)n Simple_repeat Simple_repeat 3 71 0 397 236 81 61 chr9 24548608 24548787 -117722657 + MER77 LTR ERV1 181 321 -241 356 213 32 21 chr9 24548851 24548945 -117722499 + MER21B LTR ERV1 620 714 -149 716 292 43 26 chr9 24549611 24549844 -117721600 - MIR SINE MIR -24 238 2 312 341 120 55 chr9 24549930 24550346 -117721098 + L2 LINE L2 2817 3259 -13 321 68 0 0 chr9 24550674 24550718 -117720726 + (TG)n Simple_repeat Simple_repeat 2 45 0 371 320 0 10 chr9 24551806 24551906 -117719538 - MIR SINE MIR -161 101 3 683 201 6 0 chr9 24553775 24553939 -117717505 + GA-rich Low_complexity Low_complexity 3 167 0 403 291 82 0 chr9 24555719 24555853 -117715591 - MIR SINE MIR -48 214 70 1924 200 25 73 chr9 24556220 24556751 -117714693 - MLT1D LTR MaLR 0 505 1 191 273 36 0 chr9 24558697 24558752 -117712692 - MIR SINE MIR -186 76 20 305 344 24 0 chr9 24558766 24558891 -117712553 + MIR3 SINE MIR 56 183 -25 207 0 0 0 chr9 24560028 24560051 -117711393 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1007 47 78 0 chr9 24561124 24561253 -117710191 + MER85 DNA T2_type 1 139 0 318 261 22 0 chr9 24563318 24563410 -117708034 + CT-rich Low_complexity Low_complexity 3 96 0 287 311 246 12 chr9 24563481 24563802 -117707642 - L3b LINE CR1 -86 1497 1102 180 176 0 0 chr9 24564579 24564613 -117706831 + (TG)n Simple_repeat Simple_repeat 1 34 0 382 293 44 47 chr9 24564875 24565048 -117706396 - MIR3 SINE MIR -64 144 1 34 0 0 0 chr9 24565212 24565246 -117706198 + AT_rich Low_complexity Low_complexity 1 34 0 2007 145 14 0 chr9 24566033 24566329 -117705115 + AluSx SINE Alu 1 300 -12 5721 76 43 34 chr9 24566912 24567731 -117703713 + LTR12 LTR ERV1 1 826 0 231 387 60 2 chr9 24567964 24568079 -117703365 + MIR SINE MIR 8 127 -81 697 279 139 0 chr9 24568142 24568350 -117703094 + MIR SINE MIR 19 255 -7 757 250 144 45 chr9 24568559 24569186 -117702258 + L1ME3A LINE L1 5443 6160 -10 1309 320 34 2 chr9 24569879 24570291 -117701153 - LTR16A LTR ERVL -5 445 21 518 308 72 20 chr9 24570610 24570987 -117700457 - HERV16 LTR ERVL -307 5049 4555 498 352 56 54 chr9 24571325 24572447 -117698997 - HERV16 LTR ERVL -1326 4159 3142 337 349 81 0 chr9 24572558 24572707 -117698737 - HERV16 LTR ERVL -4273 723 563 637 347 48 18 chr9 24572740 24573077 -117698367 - LTR16A LTR ERVL -88 362 16 226 222 19 37 chr9 24574113 24574167 -117697277 + MIR SINE MIR 210 262 0 276 149 0 0 chr9 24574309 24574356 -117697088 + (GGAA)n Simple_repeat Simple_repeat 2 48 0 234 298 10 39 chr9 24574374 24574478 -117696966 - MIR SINE MIR -148 114 14 180 0 0 0 chr9 24575830 24575850 -117695594 + (TTATA)n Simple_repeat Simple_repeat 3 22 0 315 0 0 0 chr9 24576613 24576648 -117694796 + (TG)n Simple_repeat Simple_repeat 1 35 0 213 359 16 0 chr9 24577030 24577094 -117694350 - L2 LINE L2 -67 3205 3141 363 286 65 36 chr9 24578320 24578488 -117692956 + MIR SINE MIR 78 250 -12 861 207 140 98 chr9 24578631 24578959 -117692485 - MER90 LTR ERV1 -233 342 1 379 283 128 82 chr9 24578995 24579409 -117692035 + L3 LINE CR1 1117 1549 -28 19127 33 2 0 chr9 24579888 24582983 -117688461 - L1PA3 LINE L1 0 6155 3060 489 281 100 6 chr9 24584100 24584260 -117687184 + MIR SINE MIR 83 257 -5 24 53 0 0 chr9 24585743 24585781 -117685663 + AT_rich Low_complexity Low_complexity 1 38 0 2518 74 0 0 chr9 24586038 24586349 -117685095 + AluY SINE Alu 1 311 0 438 263 74 47 chr9 24586699 24587064 -117684380 + L1M4 LINE L1 2933 3307 -2839 434 332 71 8 chr9 24587312 24587580 -117683864 - HAL1b LINE L1 -713 635 351 4134 227 67 22 chr9 24587680 24588861 -117682583 - L1MB7 LINE L1 -31 6389 5263 1564 175 66 66 chr9 24588861 24589255 -117682189 - MSTD LTR MaLR 0 396 3 4134 227 67 22 chr9 24589255 24589268 -117682176 - L1MB7 LINE L1 -1157 5263 5252 1609 179 39 0 chr9 24589268 24589553 -117681891 + AluJb SINE Alu 1 296 -16 4134 227 67 22 chr9 24589553 24590415 -117681029 - L1MB7 LINE L1 -1168 5252 4238 1150 319 30 3 chr9 24590476 24590840 -117680604 + MER70B LTR ERVL 77 450 -128 1618 246 41 41 chr9 24590960 24591350 -117680094 - L1MB7 LINE L1 -2139 4243 3854 2084 168 28 17 chr9 24591350 24591708 -117679736 + THE1B LTR MaLR 3 364 0 10979 111 4 3 chr9 24591708 24593286 -117678158 + THE1B-int LTR MaLR 1 1580 0 2086 138 16 35 chr9 24593286 24593657 -117677787 + THE1B LTR MaLR 1 364 0 1618 246 41 41 chr9 24593657 24593781 -117677663 - L1MB7 LINE L1 -2525 3857 3727 1079 273 50 43 chr9 24593833 24594820 -117676624 - L1MB7 LINE L1 -3749 2638 1543 252 0 0 0 chr9 24594820 24594848 -117676596 + (T)n Simple_repeat Simple_repeat 1 28 0 1020 236 10 10 chr9 24595055 24595352 -117676092 - AluSx SINE Alu -1 311 15 3518 249 62 100 chr9 24595772 24596204 -117675240 - L1M4c LINE L1 -4644 2002 1555 2399 106 0 0 chr9 24596204 24596515 -117674929 - AluSx SINE Alu -1 311 1 3518 249 62 100 chr9 24596515 24598112 -117673332 - L1M4c LINE L1 -5091 1555 1 214 195 52 0 chr9 24599156 24599233 -117672211 + (TA)n Simple_repeat Simple_repeat 2 82 0 25 0 0 0 chr9 24599317 24599342 -117672102 + AT_rich Low_complexity Low_complexity 1 25 0 787 170 7 7 chr9 24600960 24601095 -117670349 + AluSp SINE Alu 2 136 -177 837 254 22 17 chr9 24601100 24601332 -117670112 - L1MB7 LINE L1 -228 5956 5724 222 174 0 0 chr9 24601395 24601441 -117670003 + CT-rich Low_complexity Low_complexity 4 49 0 385 330 28 23 chr9 24603708 24603926 -117667518 + MLT1J1 LTR MaLR 3 221 -225 22 0 0 0 chr9 24604951 24604973 -117666471 + AT_rich Low_complexity Low_complexity 1 22 0 367 368 72 34 chr9 24605187 24605478 -117665966 + L1ME2 LINE L1 410 711 -5408 2610 238 87 7 chr9 24605480 24606078 -117665366 + MER82 DNA MER2_type 1 646 -7 7155 34 4 2 chr9 24606314 24606563 -117664881 - L1PA4 LINE L1 0 6155 5908 261 0 0 0 chr9 24606563 24606592 -117664852 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 7155 34 4 2 chr9 24606592 24607590 -117663854 - L1PA4 LINE L1 -247 5908 4889 9454 54 0 0 chr9 24607591 24608796 -117662648 + L1P LINE L1 1189 2393 -3753 572 296 52 26 chr9 24608811 24609171 -117662273 + L1ME2 LINE L1 959 1241 -4878 200 350 137 8 chr9 24610391 24610508 -117660936 + L2 LINE L2 2946 3077 -195 21 57 0 0 chr9 24611003 24611038 -117660406 + AT_rich Low_complexity Low_complexity 1 35 0 494 276 77 46 chr9 24612000 24612261 -117659183 - L1MC4 LINE L1 -478 7564 7296 274 321 80 48 chr9 24612314 24612501 -117658943 - L2 LINE L2 -663 2651 2459 3015 113 13 2 chr9 24612923 24613390 -117658054 - L1PA13 LINE L1 -3 6160 5689 254 353 41 8 chr9 24614031 24614153 -117657291 - MIR SINE MIR -65 197 72 25 0 0 0 chr9 24615223 24615248 -117656196 + AT_rich Low_complexity Low_complexity 1 25 0 32568 29 6 5 chr9 24615248 24620057 -117651387 - L1PA3 LINE L1 -3 6152 1338 21 82 0 0 chr9 24622526 24622575 -117648869 + AT_rich Low_complexity Low_complexity 1 49 0 359 345 22 84 chr9 24622815 24623174 -117648270 - MLT1I LTR MaLR -1 408 72 2159 263 157 31 chr9 24623361 24623544 -117647900 + L1ME2 LINE L1 3767 3926 -2203 6412 58 2 11 chr9 24623544 24624389 -117647055 + L1PA7 LINE L1 5303 6140 -14 2159 263 157 31 chr9 24624389 24625529 -117645915 + L1ME2 LINE L1 3926 5257 -872 2745 23 0 0 chr9 24625582 24625892 -117645552 + AluY SINE Alu 1 310 -1 850 300 15 10 chr9 24625899 24626253 -117645191 + L1ME2 LINE L1 5336 5693 -454 649 220 17 0 chr9 24626313 24626557 -117644887 + L1ME2 LINE L1 5835 6138 -9 216 0 0 0 chr9 24626992 24627016 -117644428 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 226 48 0 48 chr9 24627205 24627247 -117644197 + (TA)n Simple_repeat Simple_repeat 2 41 0 2220 116 0 3 chr9 24629665 24629975 -117641469 + AluSc SINE Alu 1 309 0 22 0 0 0 chr9 24630426 24630448 -117640996 + AT_rich Low_complexity Low_complexity 1 22 0 216 273 71 40 chr9 24631088 24631187 -117640257 + MIR SINE MIR 66 167 -95 28 29 0 0 chr9 24631207 24631242 -117640202 + AT_rich Low_complexity Low_complexity 1 35 0 182 222 89 0 chr9 24631272 24631317 -117640127 - L2 LINE L2 -86 3227 3179 274 361 82 19 chr9 24632229 24632387 -117639057 - MIR SINE MIR -13 249 82 24 32 0 0 chr9 24632714 24632745 -117638699 + AT_rich Low_complexity Low_complexity 1 31 0 216 0 0 0 chr9 24633867 24633891 -117637553 + (A)n Simple_repeat Simple_repeat 1 24 0 252 279 68 94 chr9 24634327 24634592 -117636852 + HAL1b LINE L1 269 526 -822 231 36 0 0 chr9 24634625 24634653 -117636791 + (CA)n Simple_repeat Simple_repeat 1 28 0 189 211 39 19 chr9 24634998 24635050 -117636394 + L2 LINE L2 3261 3313 0 201 213 0 0 chr9 24636154 24636201 -117635243 + GA-rich Low_complexity Low_complexity 4 50 0 306 351 11 0 chr9 24637259 24637433 -117634011 - L1MC4 LINE L1 -158 7884 7709 340 346 110 24 chr9 24637470 24637880 -117633564 - L1M4 LINE L1 -2365 4017 3573 452 252 87 8 chr9 24638072 24638199 -117633245 + L2 LINE L2 2400 2536 -778 753 224 100 61 chr9 24638319 24638976 -117632468 - L1M4 LINE L1 -3779 2603 1936 1550 206 14 14 chr9 24639054 24639409 -117632035 + L1MA9 LINE L1 4568 4922 -1224 * 14872 46 1 2 chr9 24639405 24641267 -117630177 - L1PA5 LINE L1 -1419 4727 2868 7381 40 0 0 chr9 24641267 24642697 -117628747 + L1PA5 LINE L1 4724 6153 -1 289 261 33 0 chr9 24642709 24642801 -117628643 + L1MA9 LINE L1 4909 5003 -1143 * 1180 29 0 0 chr9 24642797 24642937 -117628507 - L1P2 LINE L1 -692 5462 5323 5957 162 13 13 chr9 24642959 24643083 -117628361 + L1MA9 LINE L1 5032 5154 -1158 2096 142 0 0 chr9 24643083 24643386 -117628058 - AluSx SINE Alu -9 303 1 5957 162 13 13 chr9 24643386 24644522 -117626922 + L1MA9 LINE L1 5154 6292 -20 4688 32 2 7 chr9 24644921 24645491 -117625953 + L1PA4 LINE L1 5583 6149 -6 28 61 0 0 chr9 24645493 24645542 -117625902 + AT_rich Low_complexity Low_complexity 1 49 0 2222 278 67 15 chr9 24645764 24647445 -117623999 - L1ME3 LINE L1 -207 6373 4604 247 24 24 24 chr9 24647561 24647602 -117623842 + (TTTG)n Simple_repeat Simple_repeat 4 44 0 267 262 0 0 chr9 24648049 24648132 -117623312 - L1ME3 LINE L1 -4628 1970 1873 2447 173 138 115 chr9 24648193 24648794 -117622650 - L1MC3 LINE L1 0 7785 7199 242 299 13 13 chr9 24648794 24648871 -117622573 - MLT1F1 LTR MaLR -456 111 35 2447 173 138 115 chr9 24648871 24649299 -117622145 - L1MC3 LINE L1 -586 7199 4640 2880 261 51 44 chr9 24649303 24650397 -117621047 - L1ME3 LINE L1 -4932 1113 12 332 315 97 35 chr9 24650450 24651688 -117619756 - L1MDa LINE L1 -4831 1384 56 695 244 109 58 chr9 24651751 24652182 -117619262 - HAL1b LINE L1 -278 1070 618 327 311 88 40 chr9 24652358 24652586 -117618858 - HAL1b LINE L1 -1037 311 73 180 324 73 0 chr9 24653452 24653520 -117617924 + MIR SINE MIR 29 101 -161 586 94 12 0 chr9 24654903 24655069 -117616375 - AluSg/x SINE Alu 0 364 198 38 75 0 0 chr9 24655716 24655796 -117615648 + AT_rich Low_complexity Low_complexity 1 80 0 23 33 0 0 chr9 24655873 24655903 -117615541 + AT_rich Low_complexity Low_complexity 1 30 0 191 366 73 24 chr9 24656491 24656614 -117614830 - L2 LINE L2 0 3313 3185 551 260 40 28 chr9 24656634 24656811 -117614633 - L2 LINE L2 0 3313 3135 482 234 11 0 chr9 24656879 24656973 -117614471 + MLT1H LTR MaLR 118 212 -337 1550 193 13 6 chr9 24656974 24657290 -117614154 + L1MA3 LINE L1 5988 6305 0 5145 162 39 3 chr9 24657601 24659007 -117612437 + L1MC1 LINE L1 4671 6113 -220 22 0 0 0 chr9 24659032 24659054 -117612390 + AT_rich Low_complexity Low_complexity 1 22 0 1147 160 0 89 chr9 24659236 24659279 -117612165 + MER46A DNA MER2_type 21 66 -2665 11571 189 32 8 chr9 24659279 24662648 -117608796 - L1PA13 LINE L1 -3 6160 2719 1147 160 0 89 chr9 24662648 24662841 -117608603 + MER46A DNA MER2_type 66 236 0 213 360 117 28 chr9 24662860 24663074 -117608370 - L2 LINE L2 -499 2815 2583 361 367 116 14 chr9 24663148 24663363 -117608081 + L2 LINE L2 2857 3093 -220 245 316 0 13 chr9 24663489 24663565 -117607879 + MLT1I LTR MaLR 86 160 -249 227 250 45 98 chr9 24665277 24665409 -117606035 + MLT1I LTR MaLR 274 398 -11 335 268 88 67 chr9 24665474 24665668 -117605776 + L2 LINE L2 3116 3313 0 741 223 55 45 chr9 24665754 24666045 -117605399 + L1MD2 LINE L1 4730 5023 -1123 * 13993 101 22 30 chr9 24666043 24668274 -117603170 - L1P LINE L1 -1845 4301 2089 6575 64 15 7 chr9 24668280 24669969 -117601475 + L1PA7 LINE L1 4447 6151 -3 3935 196 62 63 chr9 24669969 24670160 -117601284 + L1MD2 LINE L1 5009 5199 -1160 2146 73 3 23 chr9 24670160 24670463 -117600981 + AluY SINE Alu 1 297 -14 3935 196 62 63 chr9 24670463 24670936 -117600508 + L1MD2 LINE L1 5199 5671 -688 1931 151 0 3 chr9 24670936 24671240 -117600204 + AluSg SINE Alu 1 303 -7 3935 196 62 63 chr9 24671240 24671936 -117599508 + L1MD2 LINE L1 5671 6357 -2 549 205 0 82 chr9 24671921 24672092 -117599352 + L1ME LINE L1 5582 5738 -428 * 469 301 23 123 chr9 24672135 24672477 -117598967 - L2 LINE L2 -338 2976 2669 187 222 254 63 chr9 24673762 24673888 -117597556 - L2 LINE L2 0 3272 3123 581 322 86 17 chr9 24674002 24674294 -117597150 - L2 LINE L2 0 3313 3002 1134 197 86 8 chr9 24674294 24674528 -117596916 - MLT1D LTR MaLR 0 505 254 591 207 0 37 chr9 24674591 24674726 -117596718 - MLT1D LTR MaLR -375 130 1 234 268 14 14 chr9 24674928 24674999 -117596445 + CT-rich Low_complexity Low_complexity 2 72 0 358 329 121 26 chr9 24675768 24676224 -117595220 + L1MC4a LINE L1 6091 6589 -1219 1844 178 0 6 chr9 24676656 24676970 -117594474 - AluJb SINE Alu 0 312 1 205 273 0 0 chr9 24677490 24677545 -117593899 + (TATATG)n Simple_repeat Simple_repeat 1 55 0 195 345 53 35 chr9 24677558 24677671 -117593773 + MIR3 SINE MIR 2 116 -92 419 327 65 12 chr9 24677869 24678037 -117593407 - MIR SINE MIR -84 178 2 384 317 179 0 chr9 24678378 24678523 -117592921 - MER5A DNA MER1_type -1 188 18 22 0 0 0 chr9 24679245 24679267 -117592177 + AT_rich Low_complexity Low_complexity 1 22 0 2858 232 91 38 chr9 24679814 24681046 -117590398 + L1MDb LINE L1 785 2046 -4360 3049 274 30 60 chr9 24681078 24683001 -117588443 + L1M3a LINE L1 4 1864 -4171 1348 205 87 9 chr9 24683122 24683444 -117588000 + MLT1A1 LTR MaLR 19 365 0 671 195 36 61 chr9 24683468 24683682 -117587762 - MSTD LTR MaLR -2 394 164 247 241 36 24 chr9 24683744 24683827 -117587617 - MSTD LTR MaLR -267 107 24 2452 252 82 25 chr9 24683866 24684752 -117586692 - MSTD-int LTR MaLR -2 1733 712 * 5106 216 40 17 chr9 24684738 24685109 -117586335 + L1M3a LINE L1 1969 2330 -3704 366 115 0 0 chr9 24685109 24685170 -117586274 + (CA)n Simple_repeat Simple_repeat 2 62 0 5106 216 40 17 chr9 24685170 24686284 -117585160 + L1M3a LINE L1 2330 3489 -2545 398 345 126 5 chr9 24686596 24686819 -117584625 + MIR SINE MIR 3 252 -10 29 0 0 0 chr9 24686959 24686988 -117584456 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr9 24687091 24687112 -117584332 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 24687343 24687364 -117584080 + AT_rich Low_complexity Low_complexity 1 21 0 188 279 186 12 chr9 24687578 24687664 -117583780 + MIR SINE MIR 74 174 -88 324 188 0 0 chr9 24688724 24688788 -117582656 + (TA)n Simple_repeat Simple_repeat 1 64 0 271 349 64 0 chr9 24689015 24689124 -117582320 + MIR3 SINE MIR 82 197 -11 317 252 27 9 chr9 24689748 24689859 -117581585 + MLT1H LTR MaLR 18 130 -419 185 283 53 26 chr9 24690360 24690473 -117580971 + L2 LINE L2 2624 2739 -575 240 380 58 44 chr9 24690741 24690967 -117580477 + L2 LINE L2 2827 3055 -217 1807 154 27 0 chr9 24691807 24692105 -117579339 - AluSx SINE Alu -6 306 1 198 103 0 0 chr9 24692488 24692517 -117578927 + (TG)n Simple_repeat Simple_repeat 2 30 0 183 80 0 0 chr9 24692537 24692562 -117578882 + (CA)n Simple_repeat Simple_repeat 2 26 0 1903 143 3 10 chr9 24692564 24692864 -117578580 - AluSx SINE Alu -14 298 1 482 190 129 37 chr9 24693004 24693167 -117578277 - MER5B DNA MER1_type 0 178 1 2720 16 0 0 chr9 24693431 24693734 -117577710 + AluY SINE Alu 1 303 -8 310 95 0 0 chr9 24694617 24694659 -117576785 + MADE1 DNA Mariner 39 80 0 267 349 24 30 chr9 24694904 24695070 -117576374 + L2 LINE L2 3119 3283 -30 1045 177 39 155 chr9 24695558 24695971 -117575473 + MLT1A1 LTR MaLR 1 365 0 6775 226 78 28 chr9 24696071 24697712 -117573732 + MLT1A1-int LTR MaLR 13 1735 0 224 291 17 17 chr9 24699104 24699170 -117572274 - MER5A DNA MER1_type -1 188 112 349 197 103 43 chr9 24699398 24699515 -117571929 - L1ME3A LINE L1 -58 6112 5989 1445 171 8 4 chr9 24699640 24699904 -117571540 - L1MD3 LINE L1 -1 7994 7730 1739 212 3 3 chr9 24750039 24750360 -117521084 - MLT1A1 LTR MaLR -37 328 8 9720 46 2 1 chr9 24750581 24751789 -117519655 - L1PA5 LINE L1 -1500 4646 3438 7215 47 0 0 chr9 24751791 24753273 -117518171 + L1PA5 LINE L1 4656 6145 -9 180 0 0 0 chr9 24753273 24753293 -117518151 + (TTAAA)n Simple_repeat Simple_repeat 3 22 0 192 352 0 34 chr9 24753399 24753487 -117517957 + MIR3 SINE MIR 103 187 -21 2253 113 0 0 chr9 24753616 24753926 -117517518 + AluSg SINE Alu 1 310 0 971 291 58 3 chr9 24754200 24754527 -117516917 - MER113 DNA MER1_type? -173 348 4 591 308 56 19 chr9 24755105 24755371 -117516073 + L2 LINE L2 2003 2278 -1036 651 273 0 6 chr9 24755378 24755554 -117515890 + HERVL-B3 LTR ERVL 2 176 -5478 2085 227 68 4 chr9 24755557 24756015 -117515429 - ERVL LTR ERVL -2331 3433 2947 289 179 0 18 chr9 24756040 24756096 -117515348 - ERVL LTR ERVL -5514 250 196 * 2105 173 6 0 chr9 24756095 24756454 -117514990 - ERVL LTR ERVL -1965 3799 3439 5024 185 27 5 chr9 24756454 24757350 -117514094 + HERVL-B3 LTR ERVL 3799 4714 -1050 2183 185 36 6 chr9 24757337 24757900 -117513544 + HERVL-B3 LTR ERVL 5123 5757 -7 * 2590 193 5 77 chr9 24757900 24758497 -117512947 + MLT2B3 LTR ERVL 1 554 0 458 264 163 4 chr9 24758497 24758724 -117512720 + L2 LINE L2 2283 2545 -769 274 222 19 0 chr9 24759392 24759446 -117511998 + ERVL LTR ERVL 4588 4642 -1122 1061 232 50 21 chr9 24759612 24760048 -117511396 - MLT1D LTR MaLR -7 498 5 27 29 0 0 chr9 24760427 24760461 -117510983 + AT_rich Low_complexity Low_complexity 1 34 0 340 287 50 10 chr9 24760552 24760653 -117510791 - L2 LINE L2 -1 3312 3208 227 366 13 33 chr9 24760781 24760934 -117510510 - L2 LINE L2 -189 3083 2934 769 255 33 28 chr9 24760941 24761153 -117510291 + MER20 DNA MER1_type 7 219 0 33 80 0 0 chr9 24761622 24761697 -117509747 + AT_rich Low_complexity Low_complexity 1 75 0 219 330 21 10 chr9 24763968 24764065 -117507379 + MIR3 SINE MIR 104 201 -7 442 250 219 21 chr9 24764077 24764269 -117507175 + MER69 DNA AcHobo 2 231 -2295 329 167 149 16 chr9 24764277 24764371 -117507073 + MER69 DNA AcHobo 2435 2525 -1 21 0 0 0 chr9 24764963 24764984 -117506460 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr9 24765349 24765373 -117506071 + AT_rich Low_complexity Low_complexity 1 24 0 268 290 254 26 chr9 24765959 24766490 -117504954 + L2 LINE L2 2109 2760 -554 290 278 56 22 chr9 24766544 24766634 -117504810 + L2 LINE L2 3192 3284 -29 300 211 13 26 chr9 24767168 24767244 -117504200 - MER112 DNA MER1_type -183 77 3 22 0 0 0 chr9 24767341 24767363 -117504081 + AT_rich Low_complexity Low_complexity 1 22 0 1452 213 46 20 chr9 24767432 24767780 -117503664 + MLT1D LTR MaLR 1 357 -148 21 36 0 0 chr9 24769317 24769345 -117502099 + AT_rich Low_complexity Low_complexity 1 28 0 207 301 81 44 chr9 24769370 24769506 -117501938 + MIR3 SINE MIR 30 170 -38 209 374 65 0 chr9 24769536 24769643 -117501801 + MIR SINE MIR 26 139 -123 319 253 22 22 chr9 24769802 24769893 -117501551 - MIR SINE MIR -20 242 152 4246 142 47 5 chr9 24769903 24770655 -117500789 - L1PB4 LINE L1 -3 6153 5371 419 283 19 19 chr9 24770680 24770786 -117500658 - MIR SINE MIR -155 107 2 1479 214 14 0 chr9 24771412 24771706 -117499738 - AluJo SINE Alu -12 300 3 234 227 15 15 chr9 24772971 24773037 -117498407 + MER116 DNA Mariner 2 67 -13 538 200 15 156 chr9 24775077 24775282 -117496162 - MER45A DNA AcHobo 0 178 3 969 308 13 60 chr9 24775358 24775806 -117495638 - LTR16B LTR ERVL -2 462 36 298 266 128 11 chr9 24776341 24776435 -117495009 - L2 LINE L2 0 3272 3168 407 343 14 14 chr9 24776440 24776583 -117494861 - MER5A DNA MER1_type 0 189 47 1664 237 41 50 chr9 24776684 24777278 -117494166 + MLT1D LTR MaLR 1 626 0 2511 175 69 41 chr9 24777507 24778074 -117493370 - LTR49 LTR ERV1 -10 585 3 255 31 0 0 chr9 24778575 24778607 -117492837 + (TG)n Simple_repeat Simple_repeat 2 33 0 4058 156 17 10 chr9 24778745 24779442 -117492002 + MER50 LTR ERV1 1 702 -32 1606 197 109 93 chr9 24779452 24780011 -117491433 - LTR36 LTR ERV1 -43 568 1 827 166 198 28 chr9 24780121 24780154 -117491290 + MER39B LTR ERV1 3 29 -624 180 0 0 0 chr9 24780154 24780174 -117491270 + (CAG)n Simple_repeat Simple_repeat 3 22 0 827 166 198 28 chr9 24780174 24780357 -117491087 + MER39B LTR ERV1 29 256 -397 952 205 31 26 chr9 24780357 24780586 -117490858 + AluJo SINE Alu 72 301 -11 1367 145 5 5 chr9 24780586 24780797 -117490647 + MER39B LTR ERV1 247 457 -196 261 54 0 27 chr9 24780797 24780834 -117490610 - THE1B LTR MaLR 0 364 329 27 29 0 0 chr9 24781098 24781132 -117490312 + AT_rich Low_complexity Low_complexity 1 34 0 181 146 42 0 chr9 24781135 24781183 -117490261 + (CATATA)n Simple_repeat Simple_repeat 3 52 0 24 0 0 0 chr9 24781670 24781694 -117489750 + AT_rich Low_complexity Low_complexity 1 24 0 2051 230 132 30 chr9 24781903 24782995 -117488449 + L1ME1 LINE L1 4948 6161 -5 33 56 0 0 chr9 24783877 24783931 -117487513 + AT_rich Low_complexity Low_complexity 1 54 0 23 0 0 0 chr9 24783946 24783969 -117487475 + AT_rich Low_complexity Low_complexity 1 23 0 1544 161 39 25 chr9 24784797 24785082 -117486362 - MER89 LTR ERV1 -3 556 268 525 298 28 34 chr9 24785073 24785251 -117486193 - LTR33A LTR ERVL -340 183 7 * 1087 156 0 0 chr9 24785827 24786006 -117485438 + L1PA13 LINE L1 5982 6160 -3 603 148 19 28 chr9 24786056 24786164 -117485280 + FLAM_C SINE Alu 24 130 -13 729 233 79 0 chr9 24786726 24786916 -117484528 - MIR SINE MIR -57 205 2 4473 147 41 31 chr9 24787857 24788642 -117482802 + MER54B LTR ERVL 1 793 0 207 0 0 0 chr9 24789150 24789173 -117482271 + (TG)n Simple_repeat Simple_repeat 2 24 0 200 83 28 0 chr9 24789173 24789204 -117482240 + (TA)n Simple_repeat Simple_repeat 2 33 0 189 0 0 0 chr9 24789886 24789907 -117481537 + (T)n Simple_repeat Simple_repeat 1 21 0 2498 109 19 0 chr9 24790331 24790699 -117480745 + THE1C LTR MaLR 1 375 0 196 330 104 0 chr9 24791463 24791569 -117479875 - MIR SINE MIR 0 262 146 265 293 66 69 chr9 24792090 24792415 -117479029 - L1MEc LINE L1 -832 1658 1333 2345 95 0 0 chr9 24792415 24792721 -117478723 - AluY SINE Alu -5 306 1 265 293 66 69 chr9 24792721 24792757 -117478687 - L1MEc LINE L1 -1157 1333 1298 497 275 45 95 chr9 24792761 24792847 -117478597 - L1MEc LINE L1 -4917 1202 1113 925 239 9 18 chr9 24792847 24793073 -117478371 - MER58A DNA MER1_type 0 224 1 497 275 45 95 chr9 24793073 24793364 -117478080 - L1MEc LINE L1 -5006 1113 844 195 69 0 0 chr9 24793521 24793550 -117477894 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1082 122 0 0 chr9 24794491 24794638 -117476806 - AluSx SINE Alu -39 273 127 1053 98 0 0 chr9 24794675 24794808 -117476636 - AluSx SINE Alu -180 133 1 366 329 29 29 chr9 24794903 24795040 -117476404 - MIR3 SINE MIR -24 184 48 288 0 0 0 chr9 24795829 24795861 -117475583 + (TG)n Simple_repeat Simple_repeat 2 33 0 186 43 0 0 chr9 24795860 24795883 -117475561 + (TCTA)n Simple_repeat Simple_repeat 4 26 0 * 477 231 0 66 chr9 24795907 24796028 -117475416 - FLAM_C SINE Alu -26 117 5 757 299 57 68 chr9 24796031 24796416 -117475028 - L2 LINE L2 -42 3271 2891 214 322 11 58 chr9 24796448 24796535 -117474909 - L2 LINE L2 -1 3271 3189 191 36 36 0 chr9 24796589 24796617 -117474827 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 303 298 46 20 chr9 24797250 24797401 -117474043 + L1ME4a LINE L1 5767 5921 -200 22 0 0 0 chr9 24797402 24797424 -117474020 + AT_rich Low_complexity Low_complexity 1 22 0 35 24 0 0 chr9 24797520 24797562 -117473882 + AT_rich Low_complexity Low_complexity 1 42 0 778 153 0 29 chr9 24797565 24797702 -117473742 + AluJb SINE Alu 171 303 -9 230 171 24 0 chr9 24798206 24798247 -117473197 + MER5A DNA MER1_type 7 48 -141 208 323 0 15 chr9 24798674 24798739 -117472705 - L2 LINE L2 -821 2493 2430 4135 72 24 0 chr9 24799133 24799674 -117471770 - MER41A LTR ERV1 0 554 1 1348 203 50 56 chr9 24800056 24800466 -117470978 - MER67C LTR ERV1 -241 273 1 3110 136 99 74 chr9 24800702 24801335 -117470109 + LTR8 LTR ERV1 1 649 -42 732 213 13 13 chr9 24801340 24801490 -117469954 - AluJo SINE Alu -157 155 6 335 260 62 5 chr9 24801766 24801958 -117469486 - L1MD2 LINE L1 -414 5945 5847 293 172 0 31 chr9 24802020 24802084 -117469360 - L1MC4 LINE L1 0 8042 7981 4232 223 96 24 chr9 24802085 24802297 -117469147 - L1MC4 LINE L1 -149 7893 7698 633 243 52 23 chr9 24802297 24802470 -117468974 - MER45A DNA AcHobo 0 178 1 4232 223 96 24 chr9 24802470 24803597 -117467847 - L1MC4 LINE L1 -344 7698 6457 21 36 0 0 chr9 24804448 24804476 -117466968 + AT_rich Low_complexity Low_complexity 1 28 0 1593 222 31 53 chr9 24804561 24804629 -117466815 + MLT1D LTR MaLR 7 75 -430 2839 149 52 47 chr9 24804629 24805221 -117466223 - LTR49 LTR ERV1 0 595 1 1593 222 31 53 chr9 24805221 24805603 -117465841 + MLT1D LTR MaLR 75 447 -58 24 85 0 0 chr9 24805806 24805853 -117465591 + AT_rich Low_complexity Low_complexity 1 47 0 443 283 74 30 chr9 24805933 24806170 -117465274 - L1ME4a LINE L1 -193 5928 5676 2114 130 0 25 chr9 24806170 24806486 -117464958 - AluSq SINE Alu -5 308 1 443 283 74 30 chr9 24806486 24806517 -117464927 - L1ME4a LINE L1 -445 5676 5648 482 212 0 10 chr9 24806519 24806618 -117464826 + MER49 LTR ERV1 1 98 -825 * 1397 129 27 65 chr9 24806614 24806877 -117464567 + MER4D LTR ERV1 324 576 -327 3104 97 14 0 chr9 24806878 24807313 -117464131 - L1PA10 LINE L1 0 6168 5728 2593 101 0 0 chr9 24807313 24807668 -117463776 - THE1A LTR MaLR 0 355 1 11574 96 6 5 chr9 24807668 24809237 -117462207 - THE1A-int LTR MaLR 0 1580 9 723 295 9 9 chr9 24809237 24809454 -117461990 - L1P3 LINE L1 -5648 227 11 1786 170 29 14 chr9 24809459 24809806 -117461638 + MER4D LTR ERV1 545 896 -7 32 26 0 0 chr9 24810008 24810047 -117461397 + AT_rich Low_complexity Low_complexity 1 39 0 368 387 106 24 chr9 24810708 24811039 -117460405 - L2 LINE L2 -2 3270 2913 22 0 0 0 chr9 24812858 24812880 -117458564 + AT_rich Low_complexity Low_complexity 1 22 0 449 309 62 33 chr9 24813513 24813723 -117457721 + MLT1I LTR MaLR 194 409 0 717 208 0 0 chr9 24813928 24814053 -117457391 + FLAM_C SINE Alu 1 125 -18 24 67 0 0 chr9 24814053 24814098 -117457346 + AT_rich Low_complexity Low_complexity 1 45 0 332 268 275 0 chr9 24814099 24814237 -117457207 - MIR SINE MIR -13 249 74 21 36 0 0 chr9 24815125 24815153 -117456291 + AT_rich Low_complexity Low_complexity 1 28 0 1911 133 7 0 chr9 24815355 24815626 -117455818 + AluSg SINE Alu 21 293 -17 2284 173 24 21 chr9 24816205 24816674 -117454770 + L1MA10 LINE L1 5863 6332 -2 6486 30 1 0 chr9 24816818 24817582 -117453862 - L1PA3 LINE L1 0 6155 5391 5853 30 0 42 chr9 24817576 24818342 -117453102 + L1PA3 LINE L1 4667 5400 -746 * 1350 203 51 0 chr9 24818707 24818989 -117452455 + AluJb SINE Alu 14 308 0 263 177 16 0 chr9 24818995 24819057 -117452387 + (TA)n Simple_repeat Simple_repeat 2 64 0 469 111 15 70 chr9 24819121 24819398 -117452046 + (CATATA)n Simple_repeat Simple_repeat 1 261 0 449 318 20 7 chr9 24819419 24819567 -117451877 + MIR SINE MIR 63 212 -50 1167 209 72 26 chr9 24819567 24819969 -117451475 + L1M4 LINE L1 2735 3159 -2987 1345 212 17 17 chr9 24819973 24820265 -117451179 + AluJo SINE Alu 1 292 -20 28 29 0 0 chr9 24820265 24820300 -117451144 + AT_rich Low_complexity Low_complexity 1 35 0 375 197 120 0 chr9 24820328 24820445 -117450999 + MER106B DNA MER1_type 903 1033 -26 3618 245 53 45 chr9 24820470 24821578 -117449866 + L1M4 LINE L1 3318 4416 -1730 2100 131 3 0 chr9 24821578 24821869 -117449575 + AluSx SINE Alu 2 293 -19 3618 245 53 45 chr9 24821869 24822182 -117449262 + L1M4 LINE L1 4416 4754 -1392 1357 233 45 22 chr9 24822182 24822539 -117448905 - MLT1A1 LTR MaLR 0 365 1 3618 245 53 45 chr9 24822539 24822658 -117448786 + L1M4 LINE L1 4754 4871 -1275 2345 244 38 65 chr9 24822662 24823446 -117447998 - L1M4 LINE L1 -5733 809 47 5623 150 8 32 chr9 24823451 24823830 -117447614 - L1PA15 LINE L1 -3 6162 5776 234 91 0 0 chr9 24823830 24823863 -117447581 + (CA)n Simple_repeat Simple_repeat 2 34 0 5623 150 8 32 chr9 24823863 24824339 -117447105 - L1PA15 LINE L1 -389 5776 5290 2389 58 3 61 chr9 24824339 24824669 -117446775 - AluY SINE Alu 0 311 1 5623 150 8 32 chr9 24824669 24825215 -117446229 - L1PA15 LINE L1 -875 5290 4783 1585 228 15 25 chr9 24826150 24826550 -117444894 + MSTD LTR MaLR 1 396 0 2263 110 0 7 chr9 24827300 24827609 -117443835 - AluSx SINE Alu -3 309 3 295 294 109 25 chr9 24828037 24828156 -117443288 + MIR SINE MIR 9 137 -125 275 307 18 18 chr9 24828162 24828276 -117443168 + MIR SINE MIR 78 191 -71 7200 40 1 1 chr9 24828276 24829284 -117442160 + L1PA5 LINE L1 5121 6128 -26 21 36 0 0 chr9 24830169 24830197 -117441247 + AT_rich Low_complexity Low_complexity 1 28 0 2070 171 49 3 chr9 24830904 24831289 -117440155 - MER57A LTR ERV1 0 403 1 1254 184 35 27 chr9 24831289 24831545 -117439899 - MER57A-int LTR ERV1 0 7537 7280 629 154 41 8 chr9 24831547 24831670 -117439774 - LTR54B LTR ERV1 -369 129 3 6602 185 29 29 chr9 24831670 24832992 -117438452 - MER57A-int LTR ERV1 -391 7146 5825 1305 143 4 13 chr9 24833320 24833550 -117437894 - MER57A-int LTR ERV1 -1716 5821 5594 328 192 19 0 chr9 24833550 24833654 -117437790 + (TA)n Simple_repeat Simple_repeat 2 107 0 4847 191 41 37 chr9 24833654 24835009 -117436435 - MER57A-int LTR ERV1 -1586 4745 3710 933 190 41 5 chr9 24835172 24835367 -117436077 + MER57-int LTR ERV1 4886 5087 -2450 278 206 29 0 chr9 24835461 24835529 -117435915 - MER41-int LTR ERV1 -3772 1164 1095 * 424 252 71 15 chr9 24835499 24835721 -117435723 - MER41-int LTR ERV1 -3591 1982 1096 399 216 0 0 chr9 24835846 24835920 -117435524 - MER34C LTR ERV1 -355 230 157 253 237 0 17 chr9 24835991 24836050 -117435394 - MER41-int LTR ERV1 -3222 2724 2667 3943 189 42 38 chr9 24836153 24836991 -117434453 - MER41-int LTR ERV1 -6694 843 3 283 279 29 10 chr9 24837717 24837821 -117433623 - L1MD3 LINE L1 -11 7984 7879 257 315 56 22 chr9 24839050 24839139 -117432305 - L2 LINE L2 0 3272 3181 25 51 0 0 chr9 24840452 24840491 -117430953 + AT_rich Low_complexity Low_complexity 1 39 0 1917 155 11 11 chr9 24840942 24841296 -117430148 + L1MA4 LINE L1 5937 6290 -10 208 363 113 19 chr9 24841712 24841872 -117429572 - L2 LINE L2 0 3272 3098 250 233 17 17 chr9 24842613 24842673 -117428771 - MIR SINE MIR -119 143 84 709 290 97 34 chr9 24842852 24843359 -117428085 - L1M4 LINE L1 -2261 3885 3347 1801 116 0 4 chr9 24843594 24843865 -117427579 - AluY SINE Alu 0 304 35 1035 76 8 0 chr9 24843878 24844009 -117427435 - AluSq/x SINE Alu -178 134 3 329 360 23 6 chr9 24844014 24844189 -117427255 - L1M4 LINE L1 -1481 4665 4488 227 170 80 0 chr9 24844364 24844476 -117426968 + (TA)n Simple_repeat Simple_repeat 1 121 0 876 226 39 42 chr9 24844486 24844792 -117426652 + L1MC4a LINE L1 6165 6469 -1339 948 173 6 34 chr9 24844825 24845004 -117426440 - FRAM SINE Alu -5 171 1 3574 256 62 17 chr9 24845004 24846276 -117425168 + L1MC4a LINE L1 6479 7807 -1 501 204 7 36 chr9 24846295 24846432 -117425012 + L1MD2 LINE L1 6215 6347 -12 1166 157 33 121 chr9 24846451 24846573 -117424871 + AluYb8 SINE Alu 16 147 -171 2216 77 3 13 chr9 24846573 24846872 -117424572 + AluY SINE Alu 1 296 -15 1166 157 33 121 chr9 24846872 24847081 -117424363 + AluYb8 SINE Alu 147 318 0 383 303 50 9 chr9 24847085 24847306 -117424138 + L1MEc LINE L1 1445 1674 -4722 3061 270 68 8 chr9 24847609 24848480 -117422964 - ERVL LTR ERVL -795 4969 4047 2164 121 0 9 chr9 24849243 24849558 -117421886 + AluSx SINE Alu 1 312 0 303 291 7 101 chr9 24850684 24850832 -117420612 - L2 LINE L2 -185 3087 2954 196 296 56 46 chr9 24851132 24851240 -117420204 - L2 LINE L2 -756 2558 2450 24 53 0 0 chr9 24852321 24852359 -117419085 + AT_rich Low_complexity Low_complexity 1 38 0 841 155 0 0 chr9 24852359 24852488 -117418956 + FRAM SINE Alu 34 162 -14 460 343 47 0 chr9 24852489 24852661 -117418783 - MIR SINE MIR -82 180 1 300 331 78 37 chr9 24852998 24853240 -117418204 + L2 LINE L2 2810 3061 -211 1556 198 44 32 chr9 24854481 24854824 -117416620 - MER7A DNA MER2_type -1 345 1 184 280 0 20 chr9 24855189 24855239 -117416205 + MIR3 SINE MIR 108 156 -52 243 149 40 0 chr9 24855274 24855348 -117416096 + (TA)n Simple_repeat Simple_repeat 2 78 0 399 345 15 45 chr9 24855415 24855615 -117415829 + MIR3 SINE MIR 14 207 -1 1297 212 82 137 chr9 24856342 24856890 -117414554 - MLT1E1 LTR MaLR 0 654 137 192 40 0 0 chr9 24857380 24857405 -117414039 + (TG)n Simple_repeat Simple_repeat 2 26 0 355 345 28 26 chr9 24857474 24857666 -117413778 - MIR SINE MIR -49 213 22 181 260 104 13 chr9 24857760 24857837 -117413607 + L2 LINE L2 3139 3222 -50 30 0 0 0 chr9 24858474 24858504 -117412940 + AT_rich Low_complexity Low_complexity 1 30 0 243 0 0 0 chr9 24858901 24858928 -117412516 + (TA)n Simple_repeat Simple_repeat 1 27 0 225 267 33 0 chr9 24859096 24859156 -117412288 - MIR SINE MIR -119 143 82 26 0 0 0 chr9 24859941 24859967 -117411477 + AT_rich Low_complexity Low_complexity 1 26 0 229 340 71 35 chr9 24860067 24860208 -117411236 - L2 LINE L2 0 3313 3168 208 321 49 0 chr9 24860455 24860536 -117410908 + L2 LINE L2 3229 3313 0 198 293 40 107 chr9 24861562 24861712 -117409732 - L3 LINE CR1 -549 1028 889 272 284 11 23 chr9 24861894 24861982 -117409462 - L2 LINE L2 -6 3307 3221 553 80 0 13 chr9 24862213 24862288 -117409156 - THE1C LTR MaLR -1 374 301 2125 146 8 40 chr9 24862290 24862666 -117408778 - THE1B LTR MaLR 0 364 1 10139 108 26 35 chr9 24862666 24864260 -117407184 - THE1B-int LTR MaLR 0 1580 1 2444 122 8 3 chr9 24864260 24864622 -117406822 - THE1B LTR MaLR 0 364 1 2655 19 7 3 chr9 24865608 24865918 -117405526 + AluY SINE Alu 1 311 0 695 210 41 39 chr9 24866014 24866169 -117405275 - MER45A DNA AcHobo 0 178 27 242 245 0 0 chr9 24866223 24866276 -117405168 + L2 LINE L2 3261 3313 0 1052 290 96 35 chr9 24867165 24867742 -117403702 + MER115 DNA AcHobo 3 543 -3488 290 26 26 0 chr9 24867742 24867781 -117403663 + (TG)n Simple_repeat Simple_repeat 2 41 0 1052 290 96 35 chr9 24867781 24867849 -117403595 + MER115 DNA AcHobo 543 4031 0 22 0 0 0 chr9 24870914 24870936 -117400508 + AT_rich Low_complexity Low_complexity 1 22 0 2201 97 0 3 chr9 24873031 24873321 -117398123 + AluSc SINE Alu 2 290 -19 1862 137 11 0 chr9 24873791 24874062 -117397382 + AluSg SINE Alu 1 274 -36 414 0 0 0 chr9 24874064 24874110 -117397334 + (TA)n Simple_repeat Simple_repeat 1 46 0 189 0 0 0 chr9 24874109 24874130 -117397314 + (CA)n Simple_repeat Simple_repeat 2 22 0 * 219 219 41 14 chr9 24875126 24875199 -117396245 + (TAGA)n Simple_repeat Simple_repeat 2 76 0 522 286 55 35 chr9 24875334 24875533 -117395911 - MIR SINE MIR -10 252 50 2627 204 19 51 chr9 24875911 24876592 -117394852 - L1MA9 LINE L1 -38 6274 5616 * 4186 199 29 8 chr9 24876590 24877749 -117393695 + L1MA9 LINE L1 4424 5603 -709 24 0 0 0 chr9 24878195 24878219 -117393225 + AT_rich Low_complexity Low_complexity 1 24 0 31 0 0 0 chr9 24878670 24878701 -117392743 + AT_rich Low_complexity Low_complexity 1 31 0 257 319 6 39 chr9 24879557 24879756 -117391688 - L1ME LINE L1 -380 5784 5589 303 200 52 58 chr9 24879849 24880004 -117391440 + MER96B DNA MER1_type? 193 346 -71 25 0 0 0 chr9 24880015 24880040 -117391404 + AT_rich Low_complexity Low_complexity 1 25 0 353 242 160 62 chr9 24880159 24880403 -117391041 - L1ME LINE L1 -343 5821 5554 7667 24 0 0 chr9 24880405 24881529 -117389915 + L1PA4 LINE L1 5016 6155 0 788 300 146 30 chr9 24881588 24882121 -117389323 + MLT1G1 LTR MaLR 1 595 0 1936 156 36 0 chr9 24883384 24883749 -117387695 + L1MA3 LINE L1 5927 6304 -1 8826 212 67 68 chr9 24883762 24889246 -117382198 - L1MC2 LINE L1 -62 6562 1094 246 62 0 0 chr9 24889246 24889278 -117382166 + (TA)n Simple_repeat Simple_repeat 2 33 0 8826 212 67 68 chr9 24889278 24890366 -117381078 - L1MC2 LINE L1 -5530 1094 6 5854 98 23 6 chr9 24890385 24891840 -117379604 - L1PA11 LINE L1 -3 6171 4692 1519 245 25 18 chr9 24891845 24892241 -117379203 - L1MD2 LINE L1 -12 6347 5949 255 61 0 0 chr9 24892366 24892399 -117379045 + (TA)n Simple_repeat Simple_repeat 2 34 0 216 0 0 0 chr9 24892399 24892423 -117379021 + (TG)n Simple_repeat Simple_repeat 2 25 0 1640 151 93 0 chr9 24892522 24892800 -117378644 + AluSx SINE Alu 2 305 -7 2338 90 3 0 chr9 24893299 24893609 -117377835 + AluSp SINE Alu 1 311 -2 2051 118 3 3 chr9 24893624 24893913 -117377531 + AluSg SINE Alu 6 294 -16 269 306 143 0 chr9 24895663 24895761 -117375683 - MIR SINE MIR 0 262 151 372 296 20 0 chr9 24895797 24895895 -117375549 + Charlie1 DNA MER1_type 38 137 -2624 1223 231 84 30 chr9 24895923 24896360 -117375084 + Charlie1 DNA MER1_type 2229 2698 -63 1778 189 0 6 chr9 24896360 24896672 -117374772 - AluJb SINE Alu -2 310 1 1223 231 84 30 chr9 24896672 24896736 -117374708 + Charlie1 DNA MER1_type 2698 2757 -4 2208 81 34 0 chr9 24896765 24896940 -117374504 - AluY SINE Alu -5 306 115 207 0 0 0 chr9 24896940 24896963 -117374481 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2208 81 34 0 chr9 24896963 24897083 -117374361 - AluY SINE Alu -196 115 1 1037 299 149 39 chr9 24897427 24897965 -117373479 + L1MA5 LINE L1 141 737 -6472 3718 255 35 19 chr9 24898102 24899229 -117372215 + L1MA5 LINE L1 1731 2874 -4335 5212 173 31 8 chr9 24899256 24901194 -117370250 + L1MA5 LINE L1 5378 7360 -2 2610 248 67 17 chr9 24901255 24902182 -117369262 + L1ME2 LINE L1 5194 6164 0 301 228 89 41 chr9 24902320 24902443 -117369001 + L1MC5 LINE L1 7784 7912 -49 201 310 70 20 chr9 24902865 24902965 -117368479 - MIR SINE MIR -102 106 1 305 327 0 47 chr9 24904798 24904905 -117366539 - MIR SINE MIR -140 122 21 249 244 44 22 chr9 24904988 24905078 -117366366 + L1MC4 LINE L1 6614 6705 -1337 216 163 0 0 chr9 24905096 24905139 -117366305 + (TA)n Simple_repeat Simple_repeat 2 44 0 228 211 0 0 chr9 24905186 24905243 -117366201 + L1MC4 LINE L1 6653 6709 -1333 495 304 77 32 chr9 24905283 24905503 -117365941 + MIR SINE MIR 21 250 -12 406 269 67 0 chr9 24905632 24905736 -117365708 - MIR SINE MIR -42 220 110 213 65 0 0 chr9 24907335 24907366 -117364078 + (TC)n Simple_repeat Simple_repeat 2 32 0 214 205 0 0 chr9 24907881 24907920 -117363524 + (TAA)n Simple_repeat Simple_repeat 3 41 0 1556 206 25 8 chr9 24910562 24910927 -117360517 - L1MB2 LINE L1 -9 6162 5792 3657 100 8 16 chr9 24910929 24911534 -117359910 + L1MB2 LINE L1 5177 5775 -388 9803 152 45 49 chr9 24911534 24912742 -117358702 + L1P3 LINE L1 10 1264 -5197 189 0 0 0 chr9 24912742 24912763 -117358681 + (CAA)n Simple_repeat Simple_repeat 1 21 0 9803 152 45 49 chr9 24912763 24913919 -117357525 + L1P3 LINE L1 1264 2423 -4038 2205 64 4 0 chr9 24913917 24914197 -117357247 + L1PA8A LINE L1 5419 5699 -432 * 947 187 65 32 chr9 24914199 24914445 -117356999 + L1MCa LINE L1 78 331 -6095 1629 166 13 0 chr9 24914465 24914767 -117356677 + L1MCa LINE L1 841 1146 -5280 * 2450 256 60 8 chr9 24914766 24915652 -117355792 + L1MB1 LINE L1 2639 3570 -2576 1589 127 8 93 chr9 24915654 24916031 -117355413 - MER4A LTR ERV1 0 664 261 556 143 10 10 chr9 24916031 24916129 -117355315 - MER4A LTR ERV1 -566 98 1 2061 250 19 30 chr9 24916136 24916761 -117354683 + L1MB1 LINE L1 3576 4193 -1953 1058 208 21 4 chr9 24916764 24917005 -117354439 + L1MC1 LINE L1 6080 6324 -9 1843 237 90 90 chr9 24917023 24917353 -117354091 + L1MB7 LINE L1 3521 3850 -2296 625 238 52 47 chr9 24917353 24917525 -117353919 + FAM SINE Alu 1 173 -2 1843 237 90 90 chr9 24917525 24917657 -117353787 + L1MB7 LINE L1 3850 3981 -2165 1789 175 17 0 chr9 24917657 24917954 -117353490 + AluSx SINE Alu 1 302 -10 1843 237 90 90 chr9 24917954 24918994 -117352450 + L1MB7 LINE L1 3980 5024 -1122 * 4492 191 19 23 chr9 24918992 24920037 -117351407 - L1 LINE L1 -1661 4485 3445 * 4588 200 17 21 chr9 24920030 24920089 -117351355 + L1MB1 LINE L1 4592 4650 -1518 2748 163 15 46 chr9 24920089 24920672 -117350772 + L1MA7 LINE L1 5727 6291 0 4588 200 17 21 chr9 24920672 24922188 -117349256 + L1MB1 LINE L1 4650 6168 0 1594 184 39 29 chr9 24922252 24922788 -117348656 + L1MB7 LINE L1 4989 5534 -650 2086 174 15 10 chr9 24922792 24923195 -117348249 - L1MB1 LINE L1 -208 5981 5577 543 140 9 65 chr9 24923199 24923306 -117348138 + LTR1B LTR ERV1 277 377 -449 2431 212 42 10 chr9 24923311 24923383 -117348061 + L1MB7 LINE L1 5544 5612 -572 4274 157 49 14 chr9 24923383 24924181 -117347263 + LTR1B LTR ERV1 1 826 0 2431 212 42 10 chr9 24924181 24924720 -117346724 + L1MB7 LINE L1 5612 6175 -9 23 86 0 0 chr9 24925022 24925080 -117346364 + AT_rich Low_complexity Low_complexity 1 58 0 340 359 0 0 chr9 24926619 24926722 -117344722 + MER5A DNA MER1_type 4 106 -83 239 347 0 0 chr9 24926771 24926843 -117344601 + (TATG)n Simple_repeat Simple_repeat 4 75 0 304 314 29 54 chr9 24928414 24928656 -117342788 + L1MC4a LINE L1 5727 5962 -1846 2365 139 16 0 chr9 24928743 24929110 -117342334 - THE1C LTR MaLR -2 373 1 9263 130 58 9 chr9 24929110 24930616 -117340828 - THE1C-int LTR MaLR 0 1580 1 1462 164 48 77 chr9 24930616 24931071 -117340373 - THE1C LTR MaLR 0 375 1 906 280 153 4 chr9 24931232 24931761 -117339683 + L1M4 LINE L1 4460 5067 -1079 240 303 15 0 chr9 24931959 24932025 -117339419 + L1ME3A LINE L1 36 102 -6294 845 289 37 54 chr9 24932142 24932550 -117338894 + L1ME3A LINE L1 160 560 -5836 311 190 0 107 chr9 24932610 24932731 -117338713 + L1ME3A LINE L1 2177 2284 -4112 1293 296 133 33 chr9 24932854 24934181 -117337263 + L1ME3A LINE L1 4073 5671 -568 5645 81 5 15 chr9 24934181 24934972 -117336472 + L1PA8 LINE L1 5386 6168 -4 1293 296 133 33 chr9 24934972 24935603 -117335841 + L1ME3A LINE L1 5671 6237 -2 4129 168 44 14 chr9 24935694 24936943 -117334501 + L1MA6 LINE L1 4803 6079 -221 1945 142 3 7 chr9 24937037 24937340 -117334104 + AluSc SINE Alu 1 302 -7 199 391 45 18 chr9 24937675 24937785 -117333659 + L2 LINE L2 3158 3270 -2 23 0 0 0 chr9 24938049 24938072 -117333372 + AT_rich Low_complexity Low_complexity 1 23 0 231 361 113 38 chr9 24938161 24938294 -117333150 + MIR3 SINE MIR 30 172 -36 240 262 71 60 chr9 24938319 24938502 -117332942 - MER112 DNA MER1_type -45 215 31 391 292 55 72 chr9 24939529 24939875 -117331569 + HAL1 LINE L1 1314 1653 -854 320 258 121 40 chr9 24940085 24940209 -117331235 - MLT1J LTR MaLR -3 508 375 23 78 0 0 chr9 24940209 24940260 -117331184 + AT_rich Low_complexity Low_complexity 1 51 0 311 354 29 0 chr9 24940621 24940796 -117330648 - HAL1 LINE L1 -853 1654 1475 2867 0 0 0 chr9 24941228 24941539 -117329905 + AluYa5 SINE Alu 1 311 0 22 80 0 0 chr9 24942313 24942363 -117329081 + AT_rich Low_complexity Low_complexity 1 50 0 1111 133 0 0 chr9 24942527 24942693 -117328751 - AluSg/x SINE Alu -11 301 136 21 0 0 0 chr9 24942831 24942852 -117328592 + AT_rich Low_complexity Low_complexity 1 21 0 2454 58 7 0 chr9 24944039 24944348 -117327096 - AluY SINE Alu 0 311 1 1479 136 4 43 chr9 24944642 24944899 -117326545 - AluSg/x SINE Alu 0 312 66 738 323 74 35 chr9 24944900 24945526 -117325918 + L2 LINE L2 1771 3305 -8 265 282 146 0 chr9 24948064 24948167 -117323277 - L2 LINE L2 -4 3309 3192 2132 106 109 6 chr9 24949675 24950005 -117321439 + THE1B LTR MaLR 1 364 0 233 320 89 24 chr9 24950474 24950822 -117320622 - HAL1 LINE L1 -1314 1193 818 11302 90 20 0 chr9 24950822 24953196 -117318248 + L1PA7 LINE L1 3760 6153 -1 233 320 89 24 chr9 24953196 24953219 -117318225 - HAL1 LINE L1 -1689 818 798 278 255 38 71 chr9 24953249 24953433 -117318011 + L1MC4a LINE L1 4108 4285 -1861 611 281 28 65 chr9 24953623 24954579 -117316865 + L1MC4a LINE L1 4563 5476 -749 691 265 54 38 chr9 24954667 24954984 -117316460 + L1MC4a LINE L1 5612 5933 -1875 2159 231 113 51 chr9 24954996 24955921 -117315523 - LTR28 LTR ERV1 0 1229 1 305 292 68 78 chr9 24955926 24956118 -117315326 + L1MC4a LINE L1 5902 6091 -1717 2037 119 0 3 chr9 24957259 24957579 -117313865 + AluSx SINE Alu 1 319 0 270 348 43 21 chr9 24957706 24957847 -117313597 - MER5A DNA MER1_type -38 151 8 247 274 16 0 chr9 24958497 24958559 -117312885 + L2 LINE L2 3204 3266 -6 32 57 0 0 chr9 24958570 24958623 -117312821 + AT_rich Low_complexity Low_complexity 1 53 0 410 335 91 6 chr9 24958700 24958876 -117312568 + MIR SINE MIR 2 192 -70 325 280 67 13 chr9 24959278 24959428 -117312016 - L1MA10 LINE L1 -8 6326 6169 2084 270 102 38 chr9 24959434 24961495 -117309949 - L1MEc LINE L1 -2796 3419 1288 2511 126 8 3 chr9 24961573 24961946 -117309498 + THE1C LTR MaLR 1 375 0 9465 132 49 8 chr9 24961946 24963463 -117307981 + THE1C-int LTR MaLR 1 1580 0 2268 141 28 0 chr9 24963463 24963825 -117307619 + THE1C LTR MaLR 1 372 -3 526 300 63 42 chr9 24963838 24964362 -117307082 - L1MEc LINE L1 -5370 1026 492 851 208 118 100 chr9 24967091 24967480 -117303964 + MSTD LTR MaLR 1 396 0 256 245 19 9 chr9 24969353 24969460 -117301984 - MIR3 SINE MIR -31 177 69 536 303 82 12 chr9 24970201 24970445 -117300999 + L3 LINE CR1 613 873 -704 464 303 87 40 chr9 24970662 24971032 -117300412 - L1MEc LINE L1 -3650 2776 2390 228 211 0 0 chr9 24971161 24971199 -117300245 + MER2 DNA MER2_type 2 39 -306 42688 48 5 1 chr9 24971224 24977349 -117294095 + L1PA4 LINE L1 3 6153 -2 24 32 0 0 chr9 24977349 24977380 -117294064 + AT_rich Low_complexity Low_complexity 1 31 0 344 138 35 0 chr9 24977383 24977441 -117294003 + MER2 DNA MER2_type 214 273 -72 22 35 0 0 chr9 24977445 24977474 -117293970 + AT_rich Low_complexity Low_complexity 1 29 0 252 0 0 0 chr9 24977482 24977510 -117293934 + (TA)n Simple_repeat Simple_repeat 1 28 0 1981 142 21 0 chr9 24977528 24977817 -117293627 - AluSx SINE Alu -17 295 1 368 219 0 0 chr9 24977820 24977884 -117293560 + MER2 DNA MER2_type 282 345 0 30 59 0 0 chr9 24977891 24977942 -117293502 + AT_rich Low_complexity Low_complexity 1 51 0 362 272 78 0 chr9 24978341 24978444 -117293000 + MIR SINE MIR 62 172 -90 254 311 47 26 chr9 24978591 24978784 -117292660 - L1MEc LINE L1 -4938 1669 1473 623 244 14 81 chr9 24979128 24979337 -117292107 - MIR SINE MIR -11 251 57 2201 114 7 0 chr9 24979339 24979647 -117291797 - AluSx SINE Alu 0 312 3 239 108 0 0 chr9 24979653 24979690 -117291754 + MLT1E3 LTR MaLR 588 624 0 237 297 177 18 chr9 24983040 24983205 -117288239 + MIR SINE MIR 28 220 -42 225 154 0 0 chr9 24983300 24983339 -117288105 + (CATATA)n Simple_repeat Simple_repeat 1 39 0 227 158 61 114 chr9 24984291 24984405 -117287039 - L1ME4a LINE L1 -47 6074 5967 491 212 50 0 chr9 24984713 24984812 -117286632 + MSTB2 LTR MaLR 2 105 -352 1709 114 240 17 chr9 24984866 24985216 -117286228 - MSTA LTR MaLR 0 428 1 22 0 0 0 chr9 24985459 24985481 -117285963 + AT_rich Low_complexity Low_complexity 1 22 0 219 301 53 26 chr9 24987880 24987993 -117283451 - L3b LINE CR1 -114 1469 1354 408 356 29 10 chr9 24988210 24988418 -117283026 - MIR SINE MIR -26 236 25 435 280 53 7 chr9 24988955 24989105 -117282339 - MIR SINE MIR -48 214 58 22 0 0 0 chr9 24989245 24989267 -117282177 + AT_rich Low_complexity Low_complexity 1 22 0 5095 153 61 7 chr9 24991880 24992825 -117278619 - L1MC1 LINE L1 -7 6326 5332 206 345 83 14 chr9 24992849 24992994 -117278450 - L2 LINE L2 -402 2912 2758 937 273 120 11 chr9 24994189 24994954 -117276490 + L1M4 LINE L1 2636 3484 -2662 2333 221 47 94 chr9 24995053 24996010 -117275434 - L1MEc LINE L1 -5496 930 19 21 0 0 0 chr9 24996024 24996045 -117275399 + AT_rich Low_complexity Low_complexity 1 21 0 1857 127 0 4 chr9 24996099 24996366 -117275078 - AluSg SINE Alu -44 266 1 429 274 79 86 chr9 24996378 24997105 -117274339 + L1M4 LINE L1 3633 4354 -1792 4964 32 2 2 chr9 24997105 24997700 -117273744 + L1PA3 LINE L1 5561 6155 0 429 274 79 86 chr9 24997700 24997930 -117273514 + L1M4 LINE L1 4354 4584 -1562 2014 177 29 0 chr9 24998812 24999163 -117272281 - MER47A DNA MER2_type 0 366 6 346 297 25 0 chr9 24999170 24999288 -117272156 + GA-rich Low_complexity Low_complexity 2 122 0 189 0 0 0 chr9 24999734 24999755 -117271689 + (A)n Simple_repeat Simple_repeat 1 21 0 571 332 11 0 chr9 25000428 25000618 -117270826 + MIR SINE MIR 34 225 -37 261 232 40 30 chr9 25000801 25000900 -117270544 - L1MC5 LINE L1 -34 7927 7828 5670 160 19 4 chr9 25001034 25002096 -117269348 - L1MA4 LINE L1 -5 6295 5210 3153 162 25 78 chr9 25002102 25002885 -117268559 - L1MA4 LINE L1 -1058 5088 4347 784 296 91 57 chr9 25002886 25003515 -117267929 + L2 LINE L2 2627 3302 -11 293 330 35 9 chr9 25003764 25003879 -117267565 + LTR33 LTR ERVL 28 145 -376 261 333 187 27 chr9 25003947 25004172 -117267272 + LTR33 LTR ERVL 260 520 -1 209 276 35 17 chr9 25004212 25004270 -117267174 - L2 LINE L2 -4 3268 3210 236 156 44 0 chr9 25004492 25004537 -117266907 + (CATA)n Simple_repeat Simple_repeat 2 48 0 465 288 77 64 chr9 25004774 25005007 -117266437 + MIR SINE MIR 25 260 -2 24 0 0 0 chr9 25005200 25005224 -117266220 + AT_rich Low_complexity Low_complexity 1 24 0 2228 114 0 0 chr9 25005228 25005527 -117265917 - AluSx SINE Alu -13 299 1 339 304 56 24 chr9 25006740 25006865 -117264579 + MIR3 SINE MIR 14 142 -66 23 54 0 0 chr9 25007256 25007293 -117264151 + AT_rich Low_complexity Low_complexity 1 37 0 863 237 107 67 chr9 25007838 25008213 -117263231 - MLT1B LTR MaLR 0 390 1 24 53 0 0 chr9 25008253 25008291 -117263153 + AT_rich Low_complexity Low_complexity 1 38 0 223 188 16 16 chr9 25008298 25008362 -117263082 + (TA)n Simple_repeat Simple_repeat 1 64 0 1749 180 55 17 chr9 25010572 25010933 -117260511 - THE1C LTR MaLR 0 375 1 9505 124 42 30 chr9 25010933 25012493 -117258951 - THE1C-int LTR MaLR 0 1580 1 1783 159 48 40 chr9 25012493 25012865 -117258579 - THE1C LTR MaLR 0 375 1 2353 215 75 19 chr9 25012900 25013514 -117257930 + LTR48 LTR ERV1 1 648 -139 6849 119 7 12 chr9 25013596 25014816 -117256628 - L1MA1 LINE L1 -7 7714 6502 * 17114 184 31 18 chr9 25014811 25020321 -117251123 - L1MA1 LINE L1 -1665 5900 319 4134 162 13 3 chr9 25020338 25021036 -117250408 + MER50 LTR ERV1 7 711 -23 1291 214 43 4 chr9 25021037 25021313 -117250131 - L1MA1 LINE L1 -7260 305 19 473 171 74 30 chr9 25021313 25021461 -117249983 + LTR48 LTR ERV1 435 542 0 259 264 233 6 chr9 25021541 25021700 -117249744 + MIR SINE MIR 68 262 0 21 0 0 0 chr9 25021867 25021888 -117249556 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr9 25022915 25022942 -117248502 + AT_rich Low_complexity Low_complexity 1 27 0 481 278 112 6 chr9 25023344 25023513 -117247931 + MIR SINE MIR 70 256 -6 2210 187 52 41 chr9 25023962 25024503 -117246941 + L1MC3 LINE L1 7238 7784 -1 2030 201 36 27 chr9 25024759 25025197 -117246247 + MLT2B1 LTR ERVL 1 442 -78 1563 207 6 13 chr9 25025199 25025513 -117245931 - AluJo SINE Alu 0 312 1 284 0 28 0 chr9 25025535 25025571 -117245873 + (TC)n Simple_repeat Simple_repeat 2 38 0 * 360 0 0 0 chr9 25025570 25025610 -117245834 + (TA)n Simple_repeat Simple_repeat 1 40 0 306 0 0 0 chr9 25025611 25025645 -117245799 + (CA)n Simple_repeat Simple_repeat 2 35 0 199 328 107 25 chr9 25025798 25025920 -117245524 + MIR SINE MIR 90 221 -41 229 300 122 0 chr9 25026217 25026307 -117245137 - L2 LINE L2 -3 3269 3169 380 227 82 0 chr9 25026362 25026472 -117244972 + L1MC4 LINE L1 5764 5882 -1926 6517 234 37 40 chr9 25026480 25028529 -117242915 + L1M2 LINE L1 4 1982 -4867 18327 168 42 46 chr9 25028533 25030324 -117241120 + L1 LINE L1 19 1815 -5750 230 127 0 95 chr9 25030324 25030387 -117241057 - LTR13 LTR ERVK -287 720 664 18327 168 42 46 chr9 25030387 25032336 -117239108 + L1 LINE L1 1815 3809 -3756 252 325 151 6 chr9 25032808 25032974 -117238470 - MIR SINE MIR -13 249 60 25 51 0 0 chr9 25033129 25033168 -117238276 + AT_rich Low_complexity Low_complexity 1 39 0 574 78 11 11 chr9 25033372 25033462 -117237982 + (TCTA)n Simple_repeat Simple_repeat 3 92 0 3154 197 20 22 chr9 25034470 25035180 -117236264 + L1 LINE L1 5861 6568 -997 2252 265 73 46 chr9 25035168 25036077 -117235367 + L1MC4 LINE L1 6738 7670 -372 * 478 174 22 201 chr9 25036129 25036353 -117235091 + L1MC4 LINE L1 7826 8009 -33 583 217 42 146 chr9 25036767 25037145 -117234299 - MER57A LTR ERV1 -2 401 63 257 258 20 93 chr9 25037231 25037343 -117234101 - MER103 DNA DNA -16 150 50 2235 90 0 10 chr9 25037343 25037643 -117233801 + AluY SINE Alu 1 297 -14 257 258 20 93 chr9 25037643 25037681 -117233763 - MER103 DNA DNA -116 50 11 254 239 84 0 chr9 25037843 25037914 -117233530 - LTR16A LTR ERVL -309 141 65 21 0 0 0 chr9 25038932 25038953 -117232491 + AT_rich Low_complexity Low_complexity 1 21 0 262 280 68 23 chr9 25040000 25040132 -117231312 + MIR SINE MIR 107 244 -18 264 122 0 0 chr9 25040195 25040236 -117231208 + (ATG)n Simple_repeat Simple_repeat 1 41 0 424 298 40 16 chr9 25040308 25040432 -117231012 + MIR3 SINE MIR 53 179 -29 2067 83 7 14 chr9 25040537 25040815 -117230629 - AluSg SINE Alu 0 310 35 21 0 0 0 chr9 25041396 25041417 -117230027 + AT_rich Low_complexity Low_complexity 1 21 0 370 167 69 0 chr9 25041786 25041858 -117229586 + Charlie5 DNA MER1_type 30 106 -2506 241 290 32 0 chr9 25041892 25041954 -117229490 - MIR SINE MIR -66 142 79 489 47 0 0 chr9 25042004 25042068 -117229376 + (GA)n Simple_repeat Simple_repeat 1 64 0 1409 149 68 4 chr9 25042070 25042318 -117229126 - MLT2D LTR ERVL -150 264 1 28 48 0 0 chr9 25044289 25044331 -117227113 + AT_rich Low_complexity Low_complexity 1 42 0 26 50 0 0 chr9 25044497 25044537 -117226907 + AT_rich Low_complexity Low_complexity 1 40 0 377 372 37 18 chr9 25044625 25044843 -117226601 - MIR SINE MIR -19 243 22 227 258 31 113 chr9 25045068 25045165 -117226279 + L2 LINE L2 3224 3312 -1 1678 186 4 0 chr9 25046274 25046554 -117224890 - AluJo SINE Alu -31 281 1 249 281 160 31 chr9 25048177 25048590 -117222854 + HAL1b LINE L1 309 774 -574 365 308 18 96 chr9 25048819 25049209 -117222235 - MLT1H LTR MaLR -185 364 31 22 0 0 0 chr9 25049320 25049342 -117222102 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chr9 25049384 25049419 -117222025 + AT_rich Low_complexity Low_complexity 1 35 0 734 170 0 0 chr9 25049430 25049542 -117221902 + FLAM_A SINE Alu 1 112 -30 420 343 47 33 chr9 25049579 25050031 -117221413 + L1M4 LINE L1 2131 2588 -3558 1089 318 24 37 chr9 25050178 25050641 -117220803 - MER90 LTR ERV1 -31 544 88 1904 215 64 52 chr9 25050699 25051258 -117220186 + MLT1F1 LTR MaLR 2 567 0 391 256 70 63 chr9 25051427 25051697 -117219747 + L1MC4 LINE L1 7769 8040 -2 806 271 104 38 chr9 25051724 25052245 -117219199 + L1ME4a LINE L1 5563 6117 -4 29 0 0 0 chr9 25052267 25052296 -117219148 + AT_rich Low_complexity Low_complexity 1 29 0 5422 107 13 0 chr9 25052715 25053507 -117217937 - L1P LINE L1 -3741 2405 1604 558 211 31 8 chr9 25054123 25054251 -117217193 - MER103 DNA DNA -10 156 26 240 311 97 29 chr9 25055151 25055254 -117216190 + L2 LINE L2 3102 3211 -61 474 216 84 26 chr9 25055407 25055562 -117215882 + L1P5 LINE L1 5499 5669 -482 587 253 63 17 chr9 25055591 25055828 -117215616 - L1M4 LINE L1 -2591 3555 3308 1830 157 11 0 chr9 25055879 25056166 -117215278 - AluSx SINE Alu -22 290 1 5335 154 28 13 chr9 25056185 25057159 -117214285 - L1MA4 LINE L1 -5 6295 5308 2050 202 20 11 chr9 25057152 25057612 -117213832 - L1MA4 LINE L1 -1842 4304 3841 * 2210 23 0 0 chr9 25058794 25059053 -117212391 - L1PA3 LINE L1 0 6155 5897 238 269 0 19 chr9 25059117 25059169 -117212275 - L2 LINE L2 -12 3260 3210 330 321 45 15 chr9 25059172 25059306 -117212138 - MIR SINE MIR -118 144 7 387 304 0 17 chr9 25060942 25061057 -117210387 - MIR SINE MIR -97 165 53 241 345 91 0 chr9 25062209 25062319 -117209125 - MER91C DNA MER1_type -11 129 10 2142 153 89 0 chr9 25062359 25062752 -117208692 - MSTA LTR MaLR 0 428 1 870 304 9 69 chr9 25063388 25063851 -117207593 - L2 LINE L2 0 3313 2879 252 0 0 0 chr9 25064293 25064321 -117207123 + (CA)n Simple_repeat Simple_repeat 2 29 0 449 245 48 20 chr9 25064728 25064875 -117206569 + LTR33 LTR ERVL 369 519 -2 213 150 0 25 chr9 25065446 25065486 -117205958 + (GAA)n Simple_repeat Simple_repeat 2 40 0 317 290 7 87 chr9 25065707 25065845 -117205599 + L1MEd LINE L1 1131 1257 -4862 297 397 38 5 chr9 25066092 25066276 -117205168 + MIR SINE MIR 11 200 -62 354 138 0 0 chr9 25068699 25068757 -117202687 + (CA)n Simple_repeat Simple_repeat 1 58 0 238 330 11 33 chr9 25069405 25069496 -117201948 - L2 LINE L2 -18 3295 3207 650 320 181 18 chr9 25069550 25069967 -117201477 - L2 LINE L2 -216 3097 2601 1402 138 96 4 chr9 25069968 25070207 -117201237 + AluSq SINE Alu 9 269 -44 333 241 199 16 chr9 25070216 25070407 -117201037 - L2 LINE L2 -696 2618 2393 306 236 49 62 chr9 25070812 25070956 -117200488 + L1MC/D LINE L1 5347 5488 -2320 329 303 77 19 chr9 25071596 25071751 -117199693 - MER5A DNA MER1_type -8 181 18 214 183 33 17 chr9 25071997 25072057 -117199387 + (TTATA)n Simple_repeat Simple_repeat 4 64 0 288 267 0 0 chr9 25072933 25073064 -117198380 + (TA)n Simple_repeat Simple_repeat 2 132 0 699 262 218 29 chr9 25073303 25073712 -117197732 - MLT1H LTR MaLR -17 532 47 590 365 4 9 chr9 25074535 25074765 -117196679 - MIR SINE MIR 0 262 34 21 0 0 0 chr9 25074801 25074822 -117196622 + AT_rich Low_complexity Low_complexity 1 21 0 230 171 0 0 chr9 25075028 25075069 -117196375 + L2 LINE L2 3261 3301 -12 1814 171 0 3 chr9 25075495 25075788 -117195656 - AluSx SINE Alu -20 292 1 23 0 0 0 chr9 25075899 25075922 -117195522 + AT_rich Low_complexity Low_complexity 1 23 0 195 286 101 79 chr9 25076182 25076360 -117195084 + MER5A DNA MER1_type 8 189 0 24 32 0 0 chr9 25077319 25077350 -117194094 + AT_rich Low_complexity Low_complexity 1 31 0 293 283 178 67 chr9 25077553 25077733 -117193711 - MIR SINE MIR -14 248 49 22 35 0 0 chr9 25077963 25077992 -117193452 + AT_rich Low_complexity Low_complexity 1 29 0 2008 143 153 8 chr9 25079397 25079769 -117191675 + MSTA LTR MaLR 1 426 -2 12834 102 6 19 chr9 25079893 25081942 -117189502 + L1PA7 LINE L1 2 2045 -4416 * 17518 112 4 10 chr9 25081938 25085174 -117186270 + L1PA7 LINE L1 3008 6225 -244 2230 71 6 74 chr9 25085175 25085527 -117185917 + L1PA7 LINE L1 5827 6154 0 2042 104 74 0 chr9 25085527 25085877 -117185567 + L1PA11 LINE L1 5814 6192 0 1707 280 62 34 chr9 25087172 25087336 -117184108 - HAL1 LINE L1 -135 2372 2214 339 78 0 0 chr9 25087336 25087387 -117184057 + (CA)n Simple_repeat Simple_repeat 2 52 0 1707 280 62 34 chr9 25087387 25088115 -117183329 - HAL1 LINE L1 -293 2214 1455 557 183 0 17 chr9 25088138 25088253 -117183191 - AluY SINE Alu -7 304 192 844 133 0 0 chr9 25088253 25088373 -117183071 - AluJb SINE Alu -168 144 25 570 256 35 20 chr9 25088395 25088594 -117182850 - HAL1 LINE L1 -1063 1444 1243 * 726 239 22 45 chr9 25088593 25088861 -117182583 - L1MA9 LINE L1 -25 6287 6026 330 310 35 97 chr9 25089287 25089597 -117181847 - HAL1 LINE L1 -1705 802 512 2572 202 72 2 chr9 25090658 25091174 -117180270 - MER68 LTR ERV1 -10 552 1 1679 99 59 131 chr9 25091387 25091791 -117179653 + THE1C LTR MaLR 1 375 0 1248 241 64 60 chr9 25092049 25092564 -117178880 - MLT2B1 LTR ERVL -3 517 1 195 69 0 0 chr9 25095174 25095203 -117176241 + (T)n Simple_repeat Simple_repeat 1 29 0 459 347 53 11 chr9 25095856 25096046 -117175398 - MIR SINE MIR -3 259 62 21 82 0 0 chr9 25097648 25097697 -117173747 + AT_rich Low_complexity Low_complexity 1 49 0 821 281 31 4 chr9 25098069 25098297 -117173147 - MIR SINE MIR -1 261 28 2698 152 8 2 chr9 25098858 25099338 -117172106 - L1MA4A LINE L1 0 6303 5821 240 295 39 101 chr9 25099966 25100095 -117171349 + L2 LINE L2 3184 3304 -9 1828 144 76 17 chr9 25100358 25100712 -117170732 - THE1C LTR MaLR 0 375 1 305 321 53 63 chr9 25100732 25100922 -117170522 + MIR3 SINE MIR 20 207 -1 2572 53 0 0 chr9 25100990 25101294 -117170150 + AluY SINE Alu 1 304 -7 495 203 68 0 chr9 25101689 25101807 -117169637 - L1MC4 LINE L1 -3 8039 7914 259 303 37 21 chr9 25101834 25102022 -117169422 + L1MB1 LINE L1 5691 5881 -240 33 25 0 0 chr9 25103520 25103560 -117167884 + AT_rich Low_complexity Low_complexity 1 40 0 396 326 25 41 chr9 25103573 25103769 -117167675 - L2 LINE L2 -832 2482 2290 650 174 0 47 chr9 25104751 25104856 -117166588 + L1MB1 LINE L1 6022 6118 -71 1722 176 25 0 chr9 25104856 25105140 -117166304 + AluJb SINE Alu 2 292 -20 650 174 0 47 chr9 25105140 25105209 -117166235 + L1MB1 LINE L1 6118 6189 0 1105 261 99 79 chr9 25106029 25106307 -117165137 - L2 LINE L2 -1 3312 3041 1958 144 13 7 chr9 25106307 25106612 -117164832 + AluSx SINE Alu 1 307 -5 1105 261 99 79 chr9 25106612 25107079 -117164365 - L2 LINE L2 -272 3041 2553 1275 273 42 15 chr9 25107137 25107543 -117163901 + LTR16C LTR ERVL 72 488 -3 1021 290 23 7 chr9 25107564 25107864 -117163580 - L2 LINE L2 -900 2414 2110 314 294 0 0 chr9 25107871 25107939 -117163505 + MER58 DNA MER1_type 1 68 -147 350 173 40 27 chr9 25108071 25108146 -117163298 + MER58 DNA MER1_type 2345 2420 0 486 282 84 27 chr9 25108150 25108412 -117163032 - L2 LINE L2 -1212 2102 1826 25 0 0 0 chr9 25109019 25109044 -117162400 + AT_rich Low_complexity Low_complexity 1 25 0 307 257 20 118 chr9 25109389 25109541 -117161903 + L2 LINE L2 3175 3311 -2 962 161 11 33 chr9 25109620 25109800 -117161644 + AluSg/x SINE Alu 137 312 0 21 57 0 0 chr9 25110091 25110126 -117161318 + AT_rich Low_complexity Low_complexity 1 35 0 621 164 86 125 chr9 25110142 25110422 -117161022 + L1MC5 LINE L1 6691 6959 -1002 1545 199 6 29 chr9 25110886 25111197 -117160247 - AluJo SINE Alu -8 304 1 22 35 0 0 chr9 25111508 25111537 -117159907 + AT_rich Low_complexity Low_complexity 1 29 0 646 100 91 0 chr9 25112424 25112534 -117158910 - L1MA9 LINE L1 -9 6303 6184 1307 115 0 0 chr9 25112540 25112722 -117158722 + AluSg/x SINE Alu 130 311 -1 1560 191 31 14 chr9 25112722 25113072 -117158372 - L1MA9 LINE L1 -175 6137 5782 599 222 6 62 chr9 25113128 25113290 -117158154 - MER5A DNA MER1_type -1 188 36 625 269 47 2 chr9 25114121 25114316 -117157128 - MIR SINE MIR -24 238 32 2080 190 58 11 chr9 25114544 25115417 -117156027 - LTR28 LTR ERV1 -1 1019 1 413 312 98 33 chr9 25116615 25116830 -117154614 - MIR SINE MIR -16 246 18 6573 72 14 0 chr9 25118032 25119433 -117152011 - L1PA7 LINE L1 -5 6149 4738 2440 90 0 0 chr9 25119446 25119757 -117151687 + AluY SINE Alu 1 311 0 7961 74 16 14 chr9 25119757 25120312 -117151132 + L1P LINE L1 2899 3452 -2694 2900 3 0 0 chr9 25120312 25120623 -117150821 - AluYb8 SINE Alu -7 311 1 7961 74 16 14 chr9 25120623 25121212 -117150232 + L1P LINE L1 3452 4045 -2101 228 143 29 29 chr9 25122098 25122168 -117149276 - L1ME4a LINE L1 -5 6116 6047 233 279 16 0 chr9 25122842 25122903 -117148541 - MIR SINE MIR -27 235 174 1371 202 18 57 chr9 25123053 25123389 -117148055 - LTR8A LTR ERV1 -3 724 402 2171 127 0 0 chr9 25123416 25123724 -117147720 + AluSg SINE Alu 1 308 -2 29 0 0 0 chr9 25123936 25123965 -117147479 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr9 25123976 25124004 -117147440 + AT_rich Low_complexity Low_complexity 1 28 0 22 80 0 0 chr9 25125875 25125925 -117145519 + AT_rich Low_complexity Low_complexity 1 50 0 198 71 0 0 chr9 25126956 25126984 -117144460 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 547 122 0 71 chr9 25127006 25127104 -117144340 + MSTB1 LTR MaLR 1 91 -341 1976 199 58 40 chr9 25127412 25127969 -117143475 + L1ME2 LINE L1 5429 5995 -169 2146 211 119 27 chr9 25127986 25128650 -117142794 + MER50 LTR ERV1 10 734 0 431 243 74 27 chr9 25128757 25128905 -117142539 + L1MA10 LINE L1 6178 6332 -2 1023 176 143 52 chr9 25129085 25129266 -117142178 - AluJb SINE Alu -5 297 81 306 0 0 0 chr9 25129266 25129300 -117142144 + (TG)n Simple_repeat Simple_repeat 1 34 0 1023 176 143 52 chr9 25129300 25129390 -117142054 - AluJb SINE Alu -221 81 1 617 320 86 5 chr9 25129590 25129812 -117141632 + MIR SINE MIR 23 262 0 1827 146 7 23 chr9 25129957 25130259 -117141185 + AluJb SINE Alu 1 297 -15 202 281 114 44 chr9 25131017 25131131 -117140313 + L2 LINE L2 3192 3313 0 1044 246 74 26 chr9 25132211 25132641 -117138803 + L1M4 LINE L1 2555 3005 -3141 29 28 0 0 chr9 25132761 25132797 -117138647 + AT_rich Low_complexity Low_complexity 1 36 0 611 310 72 30 chr9 25132837 25133125 -117138319 + L1M2b LINE L1 1237 1722 -5487 5163 242 66 11 chr9 25133132 25134565 -117136879 + L1M2 LINE L1 816 2327 -4522 551 202 24 0 chr9 25134668 25134923 -117136521 + (TA)n Simple_repeat Simple_repeat 1 261 0 183 395 55 0 chr9 25135242 25135351 -117136093 - MIR SINE MIR -78 130 16 270 0 0 0 chr9 25135353 25135383 -117136061 + (TG)n Simple_repeat Simple_repeat 1 30 0 284 263 17 85 chr9 25136033 25136151 -117135293 - MIR SINE MIR -46 216 107 1240 269 79 30 chr9 25136344 25136775 -117134669 - LTR16B LTR ERVL -12 452 1 263 301 130 0 chr9 25137331 25137468 -117133976 - MIR SINE MIR -27 181 34 23 68 0 0 chr9 25137797 25137841 -117133603 + AT_rich Low_complexity Low_complexity 1 44 0 180 0 0 0 chr9 25139931 25139951 -117131493 + (A)n Simple_repeat Simple_repeat 1 20 0 2704 118 49 5 chr9 25140289 25140714 -117130730 + MLT2A1 LTR ERVL 1 444 0 220 292 202 0 chr9 25140806 25140895 -117130549 - MIR SINE MIR 0 262 156 239 380 65 19 chr9 25141488 25141704 -117129740 - L2 LINE L2 -468 2846 2621 1371 129 0 0 chr9 25142119 25142313 -117129131 - AluSg/x SINE Alu -21 291 98 4742 58 28 0 chr9 25142743 25143350 -117128094 - L1PA7 LINE L1 -2 6152 5529 21 0 0 0 chr9 25143529 25143550 -117127894 + AT_rich Low_complexity Low_complexity 1 21 0 6449 171 56 39 chr9 25144174 25145452 -117125992 - HSMAR2 DNA Mariner -1 1301 2 283 306 28 19 chr9 25145588 25145696 -117125748 + GA-rich Low_complexity Low_complexity 3 111 0 295 302 50 44 chr9 25145897 25146056 -117125388 + MIR SINE MIR 103 262 0 288 317 0 27 chr9 25146329 25146452 -117124992 + MER5A DNA MER1_type 3 111 -67 722 292 31 4 chr9 25146655 25146881 -117124563 + MIR SINE MIR 31 262 0 2501 136 82 17 chr9 25149882 25150344 -117121100 + LTR22B LTR ERVK 1 492 0 508 335 44 64 chr9 25150391 25150687 -117120757 - L3 LINE CR1 -108 1469 1180 1287 285 102 25 chr9 25152846 25154112 -117117332 + L1MEc LINE L1 1656 3055 -3160 2775 12 0 19 chr9 25154121 25154445 -117116999 + AluYb8 SINE Alu 1 318 0 2078 170 80 15 chr9 25154537 25154926 -117116518 + MSTA LTR MaLR 15 428 0 8853 182 16 6 chr9 25154926 25156560 -117114884 + MSTA-int LTR MaLR 1 1650 -1 1844 165 86 34 chr9 25156561 25156968 -117114476 + MSTA LTR MaLR 1 428 0 711 261 91 20 chr9 25156970 25157423 -117114021 + L1MEc LINE L1 3133 3617 -2598 294 29 0 0 chr9 25157429 25157464 -117113980 + (TG)n Simple_repeat Simple_repeat 2 36 0 797 297 62 27 chr9 25157494 25158009 -117113435 + L1MEc LINE L1 3697 4229 -1986 494 350 6 0 chr9 25158209 25158386 -117113058 + MIR SINE MIR 78 255 -7 475 298 44 24 chr9 25158629 25158834 -117112610 + L2 LINE L2 2224 2432 -882 421 286 21 43 chr9 25158874 25159014 -117112430 + L2 LINE L2 3136 3272 0 1925 130 149 11 chr9 25163015 25163391 -117108053 + MSTA LTR MaLR 1 428 0 221 214 55 41 chr9 25163573 25163718 -117107726 + (TATAA)n Simple_repeat Simple_repeat 1 147 0 1119 258 67 80 chr9 25164472 25165094 -117106350 + L1MEc LINE L1 3756 4365 -1850 2178 117 0 9 chr9 25165094 25165410 -117106034 + AluSq SINE Alu 1 313 0 1119 258 67 80 chr9 25165410 25165650 -117105794 + L1MEc LINE L1 4365 4607 -1608 231 275 0 33 chr9 25165686 25165777 -117105667 + L1MEc LINE L1 4824 4911 -1304 303 245 122 45 chr9 25166003 25166248 -117105196 + L1M4 LINE L1 3729 3992 -2154 1134 263 49 80 chr9 25166274 25166974 -117104470 - L1MEc LINE L1 -3118 3097 2420 202 75 38 57 chr9 25166974 25167027 -117104417 + (TA)n Simple_repeat Simple_repeat 2 53 0 370 252 42 103 chr9 25167031 25167399 -117104045 - L1MEc LINE L1 -3802 2413 2109 313 278 145 40 chr9 25168719 25169211 -117102233 - L1P LINE L1 -846 1661 1112 635 226 6 28 chr9 25170199 25170376 -117101068 - L1ME4a LINE L1 -187 5934 5762 241 188 21 0 chr9 25171100 25171148 -117100296 + T-rich Low_complexity Low_complexity 2 50 0 210 71 0 0 chr9 25171721 25171749 -117099695 + (T)n Simple_repeat Simple_repeat 1 28 0 360 293 51 37 chr9 25172279 25172466 -117098978 + MIR SINE MIR 8 193 -62 2421 79 0 0 chr9 25172681 25172986 -117098458 - AluY SINE Alu -6 305 1 251 206 59 88 chr9 25173173 25173275 -117098169 + L3 LINE CR1 659 757 -820 2637 183 8 17 chr9 25174488 25175014 -117096430 + L1MB7 LINE L1 5643 6163 -21 1580 260 22 28 chr9 25175021 25175518 -117095926 + L1ME3A LINE L1 5417 5910 -260 1983 119 0 30 chr9 25175518 25175821 -117095623 + AluSg SINE Alu 1 294 -16 303 93 0 0 chr9 25175821 25175864 -117095580 + (TA)n Simple_repeat Simple_repeat 1 43 0 225 133 0 0 chr9 25175864 25175909 -117095535 + LTR66 LTR ERVL 394 438 -172 794 232 73 24 chr9 25175919 25176165 -117095279 + L1ME3A LINE L1 5908 6165 -5 181 337 12 35 chr9 25176240 25176326 -117095118 - L3 LINE CR1 -913 664 581 245 302 163 20 chr9 25176417 25176619 -117094825 - L3 LINE CR1 -1146 431 201 7475 35 0 0 chr9 25176621 25177538 -117093906 + L1PA3 LINE L1 5236 6152 -3 22 0 0 0 chr9 25177538 25177560 -117093884 + AT_rich Low_complexity Low_complexity 1 22 0 2557 142 14 34 chr9 25177628 25178065 -117093379 - MSTC LTR MaLR 0 428 1 245 333 21 0 chr9 25178411 25178504 -117092940 - L3b LINE CR1 -145 1438 1344 535 279 85 18 chr9 25178687 25178904 -117092540 + MIR SINE MIR 32 262 0 376 132 0 15 chr9 25179346 25179414 -117092030 - L1MA6 LINE L1 -347 5953 5887 600 122 158 14 chr9 25179415 25179501 -117091943 + L1MA8 LINE L1 6130 6202 -89 393 22 0 0 chr9 25179501 25179547 -117091897 + (TATG)n Simple_repeat Simple_repeat 3 48 0 600 122 158 14 chr9 25179547 25179599 -117091845 + L1MA8 LINE L1 6202 6288 -3 667 164 62 88 chr9 25180545 25180762 -117090682 + MLT1A1 LTR MaLR 1 193 -172 668 205 0 8 chr9 25180966 25181093 -117090351 + MLT1A1 LTR MaLR 235 360 -5 307 325 103 34 chr9 25181111 25181345 -117090099 + MIR SINE MIR 7 256 -6 256 301 6 49 chr9 25182684 25182867 -117088577 + GA-rich Low_complexity Low_complexity 4 178 0 207 260 130 50 chr9 25183408 25183508 -117087936 - L2 LINE L2 -21 3292 3185 339 305 143 35 chr9 25183962 25184165 -117087279 - L2 LINE L2 -629 2685 2461 302 297 8 16 chr9 25184333 25184461 -117086983 + (TGAA)n Simple_repeat Simple_repeat 1 127 0 1349 215 76 39 chr9 25185134 25185516 -117085928 - L1MA10 LINE L1 -1 6333 5938 812 249 0 0 chr9 25185516 25185693 -117085751 - FRAM SINE Alu 0 176 1 273 207 122 24 chr9 25185701 25185783 -117085661 - L1MA10 LINE L1 -247 5942 5853 1614 170 45 3 chr9 25186595 25186930 -117084514 - L1MA8 LINE L1 -7 6284 5936 11230 98 135 14 chr9 25188176 25190018 -117081426 - L1PBa LINE L1 -4162 2701 637 1284 140 0 0 chr9 25190021 25190221 -117081223 - L1PBa LINE L1 -6663 200 1 383 206 134 0 chr9 25190256 25190353 -117081091 - MER53 DNA DNA -1 188 79 1990 135 12 4 chr9 25190572 25190989 -117080455 - L1M2 LINE L1 -743 5403 5023 4517 147 49 43 chr9 25191069 25191536 -117079908 - L1PA16 LINE L1 -21 6145 5683 2493 74 0 0 chr9 25191536 25191846 -117079598 - AluY SINE Alu -1 310 1 4517 147 49 43 chr9 25191846 25192902 -117078542 - L1PA16 LINE L1 -483 5683 4625 265 184 0 0 chr9 25193048 25193097 -117078347 - L1M2 LINE L1 -2130 4016 3968 2785 214 15 71 chr9 25193100 25193360 -117078084 - L1PA16 LINE L1 -3604 2542 2269 1865 151 0 0 chr9 25193360 25193631 -117077813 - AluSx SINE Alu -37 275 5 2785 214 15 71 chr9 25193631 25194174 -117077270 - L1PA16 LINE L1 -3877 2269 1784 2726 256 81 42 chr9 25194511 25195058 -117076386 + L1M3b LINE L1 2079 2603 -4962 2212 112 0 0 chr9 25195058 25195352 -117076092 + AluSg SINE Alu 1 294 -16 297 0 0 0 chr9 25195352 25195385 -117076059 + (CAAG)n Simple_repeat Simple_repeat 2 34 0 2726 256 81 42 chr9 25195385 25195530 -117075914 + L1M3b LINE L1 2603 2741 -4824 369 0 0 0 chr9 25195530 25195571 -117075873 + (CA)n Simple_repeat Simple_repeat 2 42 0 2726 256 81 42 chr9 25195571 25195708 -117075736 + L1M3b LINE L1 2741 2871 -4694 180 0 0 0 chr9 25195708 25195728 -117075716 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2726 256 81 42 chr9 25195728 25196741 -117074703 + L1M3b LINE L1 2871 3901 -3664 3276 252 40 34 chr9 25196845 25198006 -117073438 - L1M4 LINE L1 -1118 5028 3860 2036 280 71 40 chr9 25198112 25199230 -117072214 + L1MEc LINE L1 485 1566 -4830 2117 123 45 31 chr9 25199230 25199589 -117071855 - THE1B LTR MaLR 0 364 1 10376 108 27 25 chr9 25199589 25200284 -117071160 - THE1B-int LTR MaLR 0 1580 888 2331 93 0 13 chr9 25200284 25200597 -117070847 - AluSp SINE Alu -4 309 1 10376 108 27 25 chr9 25200597 25201477 -117069967 - THE1B-int LTR MaLR -692 888 1 1689 131 134 27 chr9 25201477 25201806 -117069638 - THE1B LTR MaLR 0 364 1 2036 280 71 40 chr9 25201806 25202021 -117069423 + L1MEc LINE L1 1565 1862 -4534 438 229 44 49 chr9 25202064 25202247 -117069197 + L1M4 LINE L1 55 236 -6306 1600 234 110 39 chr9 25202833 25203072 -117068372 + L1M4 LINE L1 869 1090 -5556 2797 23 0 0 chr9 25203072 25203382 -117068062 + AluYa5 SINE Alu 1 310 -1 1600 234 110 39 chr9 25203382 25204130 -117067314 + L1M4 LINE L1 1090 1922 -4724 385 268 60 33 chr9 25204149 25204332 -117067112 + L1M4 LINE L1 4727 4914 -1730 1095 224 32 35 chr9 25204433 25204668 -117066776 + L1M3b LINE L1 4874 5109 -2456 192 40 0 0 chr9 25204668 25204693 -117066751 + (CAA)n Simple_repeat Simple_repeat 2 26 0 1095 224 32 35 chr9 25204693 25204797 -117066647 + L1M3b LINE L1 5109 5212 -2353 327 230 60 20 chr9 25204801 25204901 -117066543 - L2 LINE L2 -97 3216 3113 1370 239 18 12 chr9 25207634 25207965 -117063479 - MLT1A1 LTR MaLR -28 337 5 1626 174 44 4 chr9 25208095 25208370 -117063074 + AluJb SINE Alu 1 286 -26 188 298 81 48 chr9 25208899 25209023 -117062421 + MIR3 SINE MIR 4 131 -77 355 177 48 0 chr9 25210740 25210802 -117060642 - L2 LINE L2 0 3313 3249 375 41 0 0 chr9 25212887 25212936 -117058508 + (CA)n Simple_repeat Simple_repeat 2 50 0 1597 189 4 0 chr9 25213061 25213336 -117058108 + AluJo SINE Alu 1 276 -36 240 35 0 0 chr9 25213380 25213409 -117058035 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 250 343 94 21 chr9 25213587 25213820 -117057624 + L2 LINE L2 2812 3061 -211 891 180 6 12 chr9 25214608 25214769 -117056675 + THE1C LTR MaLR 1 160 -215 1437 88 0 10 chr9 25214769 25214963 -117056481 - AluY SINE Alu 0 311 120 1022 154 15 31 chr9 25214964 25215159 -117056285 + THE1C LTR MaLR 182 373 -2 9951 133 11 32 chr9 25215161 25216775 -117054669 + THE1C-int LTR MaLR 1 1580 0 2011 145 24 19 chr9 25216775 25217148 -117054296 + THE1C LTR MaLR 1 375 0 21 82 0 0 chr9 25217289 25217338 -117054106 + AT_rich Low_complexity Low_complexity 1 49 0 22 88 0 0 chr9 25217462 25217519 -117053925 + AT_rich Low_complexity Low_complexity 1 57 0 2675 166 79 13 chr9 25217706 25217893 -117053551 + L1PB4 LINE L1 5584 5757 -399 342 0 0 0 chr9 25217893 25217931 -117053513 + (CA)n Simple_repeat Simple_repeat 2 39 0 2675 166 79 13 chr9 25217931 25218274 -117053170 + L1PB4 LINE L1 5757 6149 -7 5228 116 4 13 chr9 25218351 25218631 -117052813 + L1MA2 LINE L1 5487 5768 -536 2175 128 0 0 chr9 25218631 25218935 -117052509 + AluSx SINE Alu 1 304 -8 5228 116 4 13 chr9 25218935 25219475 -117051969 + L1MA2 LINE L1 5768 6299 -5 21 36 0 0 chr9 25219475 25219503 -117051941 + AT_rich Low_complexity Low_complexity 1 28 0 869 201 6 0 chr9 25219524 25219683 -117051761 - AluY SINE Alu -20 291 132 256 188 0 62 chr9 25219844 25219908 -117051536 - LTR33A LTR ERVL -43 480 421 24 0 0 0 chr9 25220210 25220234 -117051210 + AT_rich Low_complexity Low_complexity 1 24 0 1067 269 94 17 chr9 25220254 25220755 -117050689 + MLT1G LTR MaLR 9 590 0 7986 66 3 11 chr9 25221934 25222962 -117048482 - MER11C LTR ERVK 0 1071 52 365 85 0 0 chr9 25222960 25223007 -117048437 + MER11B LTR ERVK 21 67 -1169 * 208 280 20 0 chr9 25223109 25223159 -117048285 - L2 LINE L2 -19 3253 3203 2186 125 3 3 chr9 25223170 25223483 -117047961 + AluSp SINE Alu 1 313 0 885 259 62 0 chr9 25223707 25223981 -117047463 + L1ME2 LINE L1 5832 6122 -42 388 325 138 33 chr9 25224264 25224691 -117046753 + L1M4 LINE L1 4892 5363 -783 461 254 8 8 chr9 25225014 25225132 -117046312 + L1MD3 LINE L1 6661 6778 -1217 8509 220 51 34 chr9 25225133 25226571 -117044873 + L1MA9 LINE L1 2977 4390 -3175 2367 90 0 0 chr9 25226571 25226871 -117044573 + AluY SINE Alu 1 300 -11 8509 220 51 34 chr9 25226871 25228437 -117043007 + L1MA9 LINE L1 4390 6056 -1509 4337 69 0 0 chr9 25228434 25229014 -117042430 - L1PA4 LINE L1 -4542 1604 1025 * 23893 35 4 0 chr9 25229013 25233576 -117037868 + L1PA4 LINE L1 1579 6152 -3 4778 197 54 10 chr9 25233573 25234686 -117036758 + L1MA9 LINE L1 6044 7249 -482 * 315 71 0 0 chr9 25234686 25234728 -117036716 + (CA)n Simple_repeat Simple_repeat 2 43 0 4778 197 54 10 chr9 25234728 25235234 -117036210 + L1MA9 LINE L1 7249 7731 0 261 267 75 32 chr9 25235231 25235418 -117036026 + L1MC5 LINE L1 7507 7701 -260 * 273 146 0 0 chr9 25235492 25235540 -117035904 + (TA)n Simple_repeat Simple_repeat 1 48 0 377 319 43 17 chr9 25237148 25237264 -117034180 + L2 LINE L2 3151 3269 -3 319 333 19 26 chr9 25237584 25237740 -117033704 + L2 LINE L2 2599 2753 -561 257 429 0 47 chr9 25237865 25238035 -117033409 + L2 LINE L2 2918 3079 -193 408 342 95 14 chr9 25238056 25238278 -117033166 + MIR SINE MIR 5 244 -18 231 360 112 0 chr9 25238353 25238442 -117033002 + L2 LINE L2 3133 3231 -41 1138 256 57 30 chr9 25239282 25239671 -117031773 + L1MCc LINE L1 3 738 -5684 4721 236 76 23 chr9 25239823 25240071 -117031373 + L1MCc LINE L1 2774 3007 -3934 2542 46 7 0 chr9 25240071 25240377 -117031067 + AluY SINE Alu 1 308 -3 4721 236 76 23 chr9 25240377 25242028 -117029416 + L1MCc LINE L1 3007 4743 -2198 1528 197 128 163 chr9 25242048 25242523 -117028921 + MLT2B3 LTR ERVL 1 510 -44 234 0 0 0 chr9 25242523 25242549 -117028895 + (TG)n Simple_repeat Simple_repeat 2 27 0 1528 197 128 163 chr9 25242549 25242593 -117028851 + MLT2B3 LTR ERVL 510 554 0 515 286 0 19 chr9 25242602 25242756 -117028688 + L1MCc LINE L1 4763 4913 -2028 502 223 50 14 chr9 25242954 25243093 -117028351 + L1MCc LINE L1 4907 5050 -1891 * 6280 177 47 9 chr9 25243090 25244336 -117027108 + L1MC3 LINE L1 6493 7785 0 186 323 32 48 chr9 25244941 25245065 -117026379 + MIR SINE MIR 47 168 -94 362 215 21 0 chr9 25245073 25245166 -117026278 + (CATATA)n Simple_repeat Simple_repeat 1 95 0 232 175 0 0 chr9 25245272 25245312 -117026132 + L3 LINE CR1 1514 1553 -24 193 154 58 58 chr9 25245281 25245333 -117026111 + L3b LINE CR1 1529 1580 -3 * 315 325 18 26 chr9 25246812 25246926 -117024518 + MIR SINE MIR 22 134 -128 435 344 93 5 chr9 25246957 25247227 -117024217 + L2 LINE L2 2720 3017 -296 418 235 31 0 chr9 25247238 25247336 -117024108 + Tigger3b DNA MER2_type 2 102 -1129 236 75 75 0 chr9 25247342 25247382 -117024062 + Tigger3b DNA MER2_type 282 324 -907 303 28 0 0 chr9 25247384 25247420 -117024024 + (TG)n Simple_repeat Simple_repeat 2 37 0 323 105 18 0 chr9 25247420 25247477 -117023967 + (TA)n Simple_repeat Simple_repeat 2 59 0 4394 110 18 20 chr9 25247481 25248189 -117023255 + Tigger3b DNA MER2_type 340 1046 -185 1118 121 0 0 chr9 25248433 25248590 -117022854 + Tigger3b DNA MER2_type 1049 1205 -26 310 336 100 0 chr9 25248901 25249011 -117022433 + L2 LINE L2 3136 3256 -16 246 370 91 0 chr9 25250482 25250647 -117020797 + MIR SINE MIR 83 262 0 24 67 0 0 chr9 25251026 25251071 -117020373 + AT_rich Low_complexity Low_complexity 1 45 0 340 346 84 11 chr9 25251496 25251675 -117019769 - Charlie8 DNA MER1_type -2141 276 85 333 0 0 0 chr9 25251677 25251714 -117019730 + (A)n Simple_repeat Simple_repeat 1 37 0 2421 90 0 0 chr9 25253559 25253860 -117017584 - AluSg SINE Alu -9 301 1 2099 116 14 0 chr9 25253870 25254164 -117017280 - AluSc SINE Alu -11 298 1 185 421 83 0 chr9 25254169 25254302 -117017142 + L2 LINE L2 3089 3232 -40 1223 253 84 45 chr9 25254478 25254941 -117016503 - LTR33 LTR ERVL -1 520 40 1683 154 58 61 chr9 25255312 25255616 -117015828 + THE1C LTR MaLR 1 305 -70 2467 79 0 0 chr9 25255616 25255921 -117015523 + AluY SINE Alu 1 305 -6 1683 154 58 61 chr9 25255921 25255992 -117015452 + THE1C LTR MaLR 305 375 0 1694 139 0 0 chr9 25256325 25256592 -117014852 + L1MA4A LINE L1 6026 6292 -11 675 266 130 5 chr9 25256811 25257018 -117014426 - MIR SINE MIR -24 238 6 26 0 0 0 chr9 25257279 25257305 -117014139 + AT_rich Low_complexity Low_complexity 1 26 0 222 223 287 0 chr9 25257373 25257467 -117013977 + L2 LINE L2 1899 2019 -1295 3082 137 101 20 chr9 25257468 25258048 -117013396 - LTR49 LTR ERV1 0 595 1 886 331 67 59 chr9 25258050 25258616 -117012828 + L2 LINE L2 2067 2627 -686 1705 176 65 9 chr9 25258616 25258939 -117012505 + MER2 DNA MER2_type 2 342 -2 886 331 67 59 chr9 25258939 25259578 -117011866 + L2 LINE L2 2627 3284 -29 202 294 51 85 chr9 25259605 25259782 -117011662 - L2 LINE L2 -46 3267 3097 362 301 35 9 chr9 25259876 25259989 -117011455 - MIR SINE MIR -130 132 17 3446 166 2 2 chr9 25261785 25262376 -117009068 + L1MB2 LINE L1 5577 6167 -4 299 219 55 14 chr9 25262556 25262629 -117008815 - MIR SINE MIR -83 179 104 180 293 0 0 chr9 25262863 25262904 -117008540 - L2 LINE L2 -11 3302 3262 403 304 37 43 chr9 25262917 25263078 -117008366 - MIR SINE MIR -91 171 12 330 306 89 27 chr9 25266020 25266426 -117005018 - MLT1L LTR MaLR -2 613 142 2470 61 0 7 chr9 25267353 25267663 -117003781 + AluY SINE Alu 1 308 -3 2197 96 7 13 chr9 25268745 25269048 -117002396 - AluSx SINE Alu -11 301 1 269 226 95 29 chr9 25269834 25269971 -117001473 + L1ME LINE L1 5322 5467 -2341 254 217 0 0 chr9 25270056 25270102 -117001342 + L1ME LINE L1 5616 5661 -460 21 71 0 0 chr9 25270135 25270177 -117001267 + AT_rich Low_complexity Low_complexity 1 42 0 1821 162 10 0 chr9 25270695 25271003 -117000441 + AluJb SINE Alu 1 311 -1 502 194 48 48 chr9 25271026 25271150 -117000294 + Tigger3(Golem) DNA MER2_type 1 124 -2905 413 248 293 0 chr9 25271998 25272131 -116999313 + MER5A DNA MER1_type 12 183 -6 398 358 59 5 chr9 25272216 25272420 -116999024 + MIR SINE MIR 21 235 -27 2399 71 7 13 chr9 25272867 25273176 -116998268 - AluY SINE Alu -3 308 2 282 319 127 30 chr9 25273454 25273620 -116997824 + MIR SINE MIR 23 204 -58 229 273 11 0 chr9 25273801 25273889 -116997555 + (TA)n Simple_repeat Simple_repeat 2 90 0 229 337 81 6 chr9 25274008 25274180 -116997264 + L2 LINE L2 2369 2553 -761 863 233 78 0 chr9 25274538 25274744 -116996700 + MER58A DNA MER1_type 3 224 0 718 94 0 0 chr9 25274773 25274894 -116996550 + AluSp/q SINE Alu 188 308 0 1153 267 99 19 chr9 25274988 25275453 -116995991 + MLT1D LTR MaLR 1 502 -3 474 179 0 0 chr9 25275886 25275981 -116995463 + GA-rich Low_complexity Low_complexity 2 96 0 2142 99 7 0 chr9 25276518 25276800 -116994644 + AluSc SINE Alu 1 284 -25 883 267 104 59 chr9 25277192 25277913 -116993531 + L2 LINE L2 2531 3296 -17 443 314 103 5 chr9 25278061 25278255 -116993189 - L2 LINE L2 0 3313 3101 641 260 115 67 chr9 25278943 25279255 -116992189 + MLT1I LTR MaLR 81 407 -2 21 36 0 0 chr9 25279548 25279576 -116991868 + AT_rich Low_complexity Low_complexity 1 28 0 219 324 0 54 chr9 25281460 25281534 -116989910 - L2 LINE L2 -66 3206 3137 2473 155 8 37 chr9 25281608 25282092 -116989352 + L1MB7 LINE L1 5709 6178 -6 189 288 0 51 chr9 25282906 25282965 -116988479 + L2 LINE L2 3201 3256 -16 644 332 59 56 chr9 25283148 25283540 -116987904 + L2 LINE L2 2878 3270 -2 1548 207 3 7 chr9 25284202 25284492 -116986952 + AluSx SINE Alu 1 289 -23 1778 174 7 3 chr9 25284501 25284805 -116986639 + AluJo SINE Alu 1 305 -7 4348 135 41 36 chr9 25285080 25286461 -116984983 + pTR5 LTR ERV1 741 2438 0 1762 181 10 0 chr9 25286590 25286894 -116984550 + AluSx SINE Alu 4 310 -2 21 0 0 0 chr9 25287359 25287380 -116984064 + AT_rich Low_complexity Low_complexity 1 21 0 196 238 109 50 chr9 25287581 25287682 -116983762 + MIR SINE MIR 38 144 -64 392 254 8 25 chr9 25288071 25288193 -116983251 - MER103 DNA DNA -21 145 26 449 326 83 31 chr9 25288552 25288797 -116982647 + L1MB7 LINE L1 3996 4227 -1919 2048 123 28 0 chr9 25288797 25289081 -116982363 - AluSg SINE Alu -18 292 1 449 326 83 31 chr9 25289081 25290173 -116981271 + L1MB7 LINE L1 4227 5403 -743 1650 170 64 19 chr9 25290216 25290575 -116980869 - THE1C LTR MaLR 0 375 1 430 318 90 26 chr9 25290857 25291244 -116980200 + HAL1 LINE L1 1371 1782 -725 39 0 0 0 chr9 25291670 25291709 -116979735 + AT_rich Low_complexity Low_complexity 1 39 0 5580 247 59 35 chr9 25292060 25292250 -116979194 + L1MEc LINE L1 789 973 -5242 2266 108 0 6 chr9 25292250 25292565 -116978879 + AluSq SINE Alu 1 313 0 5580 247 59 35 chr9 25292565 25295272 -116976172 + L1MEc LINE L1 973 3686 -2529 1396 163 42 0 chr9 25295791 25296031 -116975413 - Tigger3(Golem) DNA MER2_type 0 3035 2786 6697 238 59 46 chr9 25296614 25298970 -116972474 + L1M4b LINE L1 19 2523 -4615 270 81 0 0 chr9 25298970 25299007 -116972437 + (CA)n Simple_repeat Simple_repeat 2 38 0 6697 238 59 46 chr9 25299007 25299211 -116972233 + L1M4b LINE L1 2523 2723 -4415 399 306 24 44 chr9 25299202 25299450 -116971994 + L1MEc LINE L1 1729 1971 -4425 * 5395 148 71 45 chr9 25299658 25300803 -116970641 - Ricksha_a DNA DNA -7 1174 1 6954 228 63 20 chr9 25300820 25302747 -116968697 + L1MEc LINE L1 2221 4440 -1775 2352 73 3 16 chr9 25302747 25303060 -116968384 + AluY SINE Alu 1 309 -2 6954 228 63 20 chr9 25303060 25303528 -116967916 + L1MEc LINE L1 4440 4886 -1329 3160 192 62 7 chr9 25303533 25304211 -116967233 + L1MB7 LINE L1 5470 6184 0 533 231 176 33 chr9 25307335 25307517 -116963927 - MIR SINE MIR -1 261 54 925 270 68 4 chr9 25308056 25308293 -116963151 + MIR SINE MIR 1 252 -10 182 88 0 29 chr9 25308300 25308334 -116963110 + (CAT)n Simple_repeat Simple_repeat 2 34 0 242 332 25 55 chr9 25308461 25308660 -116962784 + L2 LINE L2 2545 2737 -577 225 274 0 32 chr9 25308894 25308956 -116962488 - MIR SINE MIR -62 146 87 351 264 132 40 chr9 25309077 25309251 -116962193 - MIR SINE MIR 0 262 73 519 17 0 0 chr9 25310032 25310087 -116961357 + (TCCA)n Simple_repeat Simple_repeat 1 115 0 519 17 0 0 chr9 25310087 25310147 -116961297 + (TCCA)n Simple_repeat Simple_repeat 1 60 0 376 346 30 0 chr9 25311221 25311354 -116960090 - L2 LINE L2 -3 3269 3133 1851 79 4 20 chr9 25311547 25311800 -116959644 - AluSp SINE Alu 0 313 65 1504 230 55 93 chr9 25312192 25312434 -116959010 - MLT1E2 LTR MaLR -1 625 375 2619 41 0 13 chr9 25312434 25312749 -116958695 + AluY SINE Alu 1 311 0 1504 230 55 93 chr9 25312749 25313119 -116958325 - MLT1E2 LTR MaLR -251 375 59 278 299 62 7 chr9 25313280 25313424 -116958020 - L1ME4a LINE L1 -14 6107 5956 236 254 127 35 chr9 25313521 25313694 -116957750 - L1ME4a LINE L1 -306 5815 5627 973 270 96 12 chr9 25313914 25314258 -116957186 + MLT1I LTR MaLR 1 373 -36 1904 214 46 32 chr9 25314761 25315257 -116956187 - MLT1D LTR MaLR -2 503 1 371 263 114 18 chr9 25316509 25316623 -116954821 + MLT1I LTR MaLR 285 409 0 29 28 0 0 chr9 25316800 25316836 -116954608 + AT_rich Low_complexity Low_complexity 1 36 0 1483 153 12 117 chr9 25317477 25317811 -116953633 - AluJb SINE Alu -1 301 3 219 304 0 8 chr9 25317932 25318004 -116953440 + GA-rich Low_complexity Low_complexity 3 124 0 21 36 0 0 chr9 25318487 25318515 -116952929 + AT_rich Low_complexity Low_complexity 1 28 0 245 271 112 28 chr9 25319035 25319201 -116952243 + MIR SINE MIR 44 219 -43 462 223 214 0 chr9 25319523 25319635 -116951809 - MER5A DNA MER1_type 0 189 54 426 316 169 32 chr9 25320873 25321221 -116950223 - L2 LINE L2 -47 3266 2871 21 71 0 0 chr9 25321449 25321491 -116949953 + AT_rich Low_complexity Low_complexity 1 42 0 1975 117 70 9 chr9 25321514 25321856 -116949588 - L1PA13 LINE L1 -7 6156 5794 22 56 0 0 chr9 25322633 25322669 -116948775 + AT_rich Low_complexity Low_complexity 1 36 0 360 238 66 41 chr9 25323507 25323629 -116947815 - L2 LINE L2 -2 3311 3187 2054 100 0 10 chr9 25323630 25323966 -116947478 + AluSg SINE Alu 5 310 0 828 307 114 35 chr9 25324011 25324588 -116946856 - L2 LINE L2 -1 3312 2690 299 339 73 0 chr9 25325112 25325236 -116946208 + L2 LINE L2 3165 3297 -16 267 31 0 0 chr9 25326597 25326629 -116944815 + (CA)n Simple_repeat Simple_repeat 2 33 0 244 313 134 8 chr9 25326833 25326967 -116944477 - MIR SINE MIR -71 191 41 362 286 139 58 chr9 25327120 25327480 -116943964 + MLT1J LTR MaLR 99 487 -24 23 54 0 0 chr9 25327545 25327582 -116943862 + AT_rich Low_complexity Low_complexity 1 37 0 504 299 85 19 chr9 25329151 25329362 -116942082 + MIR SINE MIR 28 252 -10 186 217 43 0 chr9 25331195 25331241 -116940203 + L2 LINE L2 3266 3313 0 2065 187 98 0 chr9 25331267 25331673 -116939771 - MER74C LTR ERVL -2 458 13 2409 68 0 3 chr9 25331673 25331969 -116939475 - AluY SINE Alu -16 295 1 1966 157 50 66 chr9 25332119 25332558 -116938886 + MSTB1 LTR MaLR 1 432 0 22 0 0 0 chr9 25332586 25332608 -116938836 + AT_rich Low_complexity Low_complexity 1 22 0 1486 201 65 100 chr9 25332863 25333384 -116938060 + MLT1D LTR MaLR 1 503 -2 27 49 0 0 chr9 25334682 25334723 -116936721 + AT_rich Low_complexity Low_complexity 1 41 0 2623 245 115 15 chr9 25335058 25335833 -116935611 - L1ME LINE L1 -395 5838 5141 210 37 0 0 chr9 25335833 25335860 -116935584 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 2623 245 115 15 chr9 25335860 25335961 -116935483 - L1ME LINE L1 -1092 5141 5051 2100 122 138 5 chr9 25335961 25336339 -116935105 - MSTA LTR MaLR 0 428 1 2623 245 115 15 chr9 25336339 25337340 -116934104 - L1ME LINE L1 -1182 5051 3772 713 110 45 0 chr9 25337489 25337643 -116933801 + (TA)n Simple_repeat Simple_repeat 1 161 0 318 202 11 64 chr9 25337643 25337737 -116933707 - L1MC4 LINE L1 -1338 6704 6616 478 157 41 0 chr9 25337737 25337858 -116933586 + (TA)n Simple_repeat Simple_repeat 1 126 0 393 75 0 0 chr9 25337895 25337948 -116933496 + (TA)n Simple_repeat Simple_repeat 1 53 0 2110 104 16 50 chr9 25337948 25338265 -116933179 - AluSc SINE Alu -3 306 1 23 86 0 0 chr9 25338274 25338332 -116933112 + AT_rich Low_complexity Low_complexity 1 58 0 388 261 13 25 chr9 25338467 25338624 -116932820 + MER105 DNA DNA 1 155 -49 582 246 17 90 chr9 25338673 25338837 -116932607 - L1ME LINE L1 -2913 3302 3128 494 230 88 18 chr9 25338837 25338950 -116932494 - FLAM_A SINE Alu -11 122 2 582 246 17 90 chr9 25338950 25339187 -116932257 - L1ME LINE L1 -3087 3128 2930 539 178 0 10 chr9 25339188 25339289 -116932155 + AluJo SINE Alu 119 218 -94 4791 163 36 29 chr9 25339418 25340337 -116931107 - L1MA9 LINE L1 0 6312 5401 2399 68 102 0 chr9 25340337 25340659 -116930785 + THE1A LTR MaLR 1 355 0 11406 96 16 2 chr9 25340659 25342217 -116929227 + THE1A-int LTR MaLR 1 1580 0 2720 85 3 0 chr9 25342217 25342571 -116928873 + THE1A LTR MaLR 1 355 0 4791 163 36 29 chr9 25342571 25342972 -116928472 - L1MA9 LINE L1 -910 5402 4973 244 282 13 0 chr9 25343013 25343091 -116928353 - L1ME LINE L1 -6211 185 107 188 306 10 15 chr9 25343305 25343372 -116928072 + L2 LINE L2 3188 3295 -18 362 339 54 63 chr9 25343466 25343487 -116927957 - MIR SINE MIR -6 256 236 612 250 111 43 chr9 25343487 25343528 -116927916 + MER58A DNA MER1_type 3 40 -2380 2250 70 0 23 chr9 25343528 25343861 -116927583 - AluY SINE Alu 0 311 1 612 250 111 43 chr9 25343861 25344027 -116927417 + MER58A DNA MER1_type 40 224 0 362 339 54 63 chr9 25344027 25344244 -116927200 - MIR SINE MIR -26 236 20 225 171 29 14 chr9 25344486 25344556 -116926888 + (TA)n Simple_repeat Simple_repeat 2 72 0 224 299 69 23 chr9 25346802 25346889 -116924555 + MIR SINE MIR 55 145 -63 199 313 0 0 chr9 25346946 25346994 -116924450 + L2 LINE L2 3251 3298 -15 217 356 144 28 chr9 25347110 25347290 -116924154 + L3 LINE CR1 1244 1444 -133 455 263 46 20 chr9 25347339 25347491 -116923953 + MIR SINE MIR 31 186 -76 725 271 12 134 chr9 25348161 25348640 -116922804 - L2 LINE L2 -1 3312 2892 246 292 37 35 chr9 25349363 25349509 -116921935 + MIR SINE MIR 32 174 -66 222 337 94 48 chr9 25350194 25350630 -116920814 - L2 LINE L2 -814 2500 2045 238 254 34 17 chr9 25351097 25351156 -116920288 - L2 LINE L2 -12 3260 3201 2410 119 5 22 chr9 25351528 25351897 -116919547 + THE1B LTR MaLR 1 363 -1 7466 68 3 8 chr9 25352299 25354073 -116917371 + L1PA6 LINE L1 4390 6154 0 688 247 111 14 chr9 25354229 25354607 -116916837 + L1ME3A LINE L1 5739 6160 -2 369 277 35 64 chr9 25355176 25355317 -116916127 + MIR SINE MIR 13 149 -113 733 216 25 0 chr9 25355418 25355580 -116915864 - MER97a DNA MER1_type? -715 179 14 2091 162 12 3 chr9 25356309 25356643 -116914801 + MER1B DNA MER1_type 1 337 0 222 37 0 0 chr9 25356783 25356810 -116914634 + (CAAAA)n Simple_repeat Simple_repeat 5 31 0 24 0 0 0 chr9 25357080 25357104 -116914340 + AT_rich Low_complexity Low_complexity 1 24 0 826 300 16 4 chr9 25357172 25357419 -116914025 + MIR SINE MIR 8 257 -5 396 353 53 35 chr9 25357720 25358097 -116913347 + L2 LINE L2 2360 2743 -571 281 287 0 43 chr9 25358477 25358571 -116912873 + L2 LINE L2 2994 3083 -189 504 301 38 16 chr9 25358891 25359074 -116912370 - MIR SINE MIR -74 188 2 422 305 85 37 chr9 25359239 25359403 -116912041 + L3b LINE CR1 1388 1559 -24 433 294 64 46 chr9 25360112 25360318 -116911126 - MIR SINE MIR -55 207 2 666 267 71 29 chr9 25360468 25360708 -116910736 - MIR SINE MIR -5 257 8 789 221 33 6 chr9 25360723 25360904 -116910540 + MER5A DNA MER1_type 4 189 0 22 0 0 0 chr9 25361933 25361955 -116909489 + AT_rich Low_complexity Low_complexity 1 22 0 359 262 30 83 chr9 25362120 25362288 -116909156 - MIR SINE MIR -5 257 99 1066 271 191 26 chr9 25362300 25362798 -116908646 + MLT1G1 LTR MaLR 15 594 -1 236 269 87 39 chr9 25362952 25363056 -116908388 - L2 LINE L2 -5 3267 3159 211 225 0 0 chr9 25363306 25363346 -116908098 + (CATATA)n Simple_repeat Simple_repeat 3 42 0 459 0 0 0 chr9 25363427 25363478 -116907966 + (CA)n Simple_repeat Simple_repeat 1 51 0 1488 197 25 11 chr9 25363556 25363673 -116907771 + AluJo SINE Alu 1 115 -190 234 0 0 0 chr9 25363673 25363699 -116907745 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 1488 197 25 11 chr9 25363699 25363882 -116907562 + AluJo SINE Alu 115 305 0 787 240 95 117 chr9 25364020 25364605 -116906839 + L1MDa LINE L1 123 649 -5894 2573 57 0 13 chr9 25364605 25364919 -116906525 - AluY SINE Alu -1 310 1 787 240 95 117 chr9 25364919 25365539 -116905905 + L1MDa LINE L1 649 1281 -5262 270 342 45 9 chr9 25366219 25366330 -116905114 + MIR SINE MIR 35 149 -113 556 41 0 0 chr9 25367332 25367405 -116904039 + L1PA8 LINE L1 6095 6167 -5 223 323 40 50 chr9 25367574 25367673 -116903771 + MIR SINE MIR 20 117 -91 234 211 18 35 chr9 25368076 25368133 -116903311 + MIR SINE MIR 37 92 -170 486 244 43 37 chr9 25368582 25368746 -116902698 - MIR SINE MIR 0 262 98 1473 122 20 0 chr9 25369090 25369344 -116902100 - L1MA5 LINE L1 -4 6296 6038 484 230 43 50 chr9 25369366 25369505 -116901939 - MIR SINE MIR -27 235 98 293 310 0 0 chr9 25370331 25370402 -116901042 - L2 LINE L2 -22 3250 3180 273 260 96 123 chr9 25374193 25374282 -116897162 - MIR SINE MIR -45 217 127 2198 92 0 0 chr9 25374282 25374603 -116896841 + AluY SINE Alu 1 321 0 273 260 96 123 chr9 25374603 25374730 -116896714 - MIR SINE MIR -135 127 5 22 0 0 0 chr9 25375704 25375726 -116895718 + AT_rich Low_complexity Low_complexity 1 22 0 289 339 16 16 chr9 25376659 25376783 -116894661 - MLT2E LTR ERVL -473 155 32 2281 108 7 0 chr9 25377529 25377836 -116893608 + AluSc SINE Alu 1 309 0 2524 74 0 0 chr9 25377899 25378208 -116893236 + AluY SINE Alu 1 309 -2 1926 120 72 3 chr9 25378477 25378769 -116892675 + AluSx SINE Alu 1 312 0 560 304 151 31 chr9 25379194 25379621 -116891823 + L2 LINE L2 2743 3238 -75 1607 256 67 20 chr9 25379707 25380156 -116891288 - L2 LINE L2 -6 3307 2838 1381 199 29 60 chr9 25380167 25380483 -116890961 + AluJo SINE Alu 7 312 0 660 147 0 53 chr9 25380487 25380677 -116890767 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 4451 40 0 0 chr9 25380677 25381255 -116890189 - L1PA4 LINE L1 -795 5351 4774 6717 34 2 0 chr9 25381255 25382055 -116889389 + L1PA4 LINE L1 5353 6155 0 372 306 50 54 chr9 25382095 25382317 -116889127 - L2 LINE L2 -368 2946 2726 297 290 56 9 chr9 25382691 25382798 -116888646 - MIR3 SINE MIR -2 206 95 313 283 69 56 chr9 25383937 25384170 -116887274 + MARNA DNA Mariner 334 569 -17 275 373 63 0 chr9 25384228 25384386 -116887058 + MIR SINE MIR 72 239 -23 251 357 0 19 chr9 25385192 25385316 -116886128 - MIR SINE MIR -67 141 21 540 291 114 17 chr9 25385720 25385957 -116885487 - MIR SINE MIR 0 262 3 224 252 134 39 chr9 25387098 25387225 -116884219 + MER5A DNA MER1_type 21 159 -30 583 237 22 0 chr9 25387377 25387512 -116883932 + MIR SINE MIR 69 206 -56 829 218 42 26 chr9 25387519 25387712 -116883732 + MER20 DNA MER1_type 1 196 -23 543 297 42 6 chr9 25387758 25387923 -116883521 + MIR SINE MIR 48 218 -44 188 227 67 40 chr9 25389587 25389662 -116881782 - MIR SINE MIR -76 186 110 939 186 6 33 chr9 25389806 25389989 -116881455 + MER5B DNA MER1_type 1 178 0 347 314 101 60 chr9 25390047 25390458 -116880986 + L2 LINE L2 2818 3249 -23 3223 126 20 39 chr9 25390458 25391000 -116880444 + L1MB4 LINE L1 5648 6179 -1 347 314 101 60 chr9 25391000 25391025 -116880419 + L2 LINE L2 3249 3272 0 * 494 321 77 18 chr9 25391024 25391338 -116880106 + L2 LINE L2 2753 3092 -221 299 235 0 15 chr9 25391351 25391419 -116880025 - MLT1J2 LTR MaLR 0 450 384 615 231 39 0 chr9 25391419 25391549 -116879895 - MER5A DNA MER1_type -8 181 47 1524 174 40 82 chr9 25391549 25391608 -116879836 + MLT1A1 LTR MaLR 1 61 -304 2490 137 28 14 chr9 25391608 25391967 -116879477 - THE1B LTR MaLR 0 364 1 1524 174 40 82 chr9 25391967 25392287 -116879157 + MLT1A1 LTR MaLR 61 364 -1 332 128 0 0 chr9 25392287 25392334 -116879110 - MER5A DNA MER1_type -137 52 6 990 269 97 38 chr9 25392334 25392706 -116878738 - MLT1J2 LTR MaLR -50 400 7 599 232 39 77 chr9 25392716 25392923 -116878521 + L2 LINE L2 3115 3313 0 461 376 41 5 chr9 25393888 25394106 -116877338 - MIR SINE MIR -6 256 31 281 333 44 0 chr9 25394136 25394226 -116877218 - L2 LINE L2 -1 3271 3178 232 274 48 0 chr9 25394302 25394364 -116877080 - L2 LINE L2 -219 3053 2989 462 229 16 16 chr9 25395358 25395480 -116875964 + MLT1J2 LTR MaLR 20 141 -309 197 368 104 10 chr9 25396006 25396077 -116875367 + L2 LINE L2 2767 2830 -484 949 53 76 30 chr9 25396077 25396208 -116875236 + MER85 DNA T2_type 1 137 -2 197 368 104 10 chr9 25396208 25396329 -116875115 + L2 LINE L2 2830 2977 -337 2236 112 7 0 chr9 25396441 25396744 -116874700 - AluSq SINE Alu -8 305 1 22 36 0 55 chr9 25397508 25397542 -116873902 + AT_rich Low_complexity Low_complexity 1 32 -20 2252 99 0 0 chr9 25397542 25397826 -116873618 - AluSg SINE Alu -26 284 1 22 36 0 55 chr9 25397826 25397846 -116873598 + AT_rich Low_complexity Low_complexity 32 52 0 565 263 74 21 chr9 25397999 25398189 -116873255 + MIR SINE MIR 53 252 -10 342 223 32 21 chr9 25399909 25400003 -116871441 - MIR SINE MIR -105 157 63 365 336 146 0 chr9 25400396 25400622 -116870822 + MIR SINE MIR 4 262 0 507 283 7 21 chr9 25401343 25401488 -116869956 + MIR SINE MIR 49 191 -71 21 0 0 0 chr9 25401552 25401573 -116869871 + AT_rich Low_complexity Low_complexity 1 21 0 679 291 37 8 chr9 25402572 25402813 -116868631 + MIR SINE MIR 4 251 -11 213 256 135 60 chr9 25404193 25404326 -116867118 + L2 LINE L2 2937 3079 -193 278 217 65 33 chr9 25404462 25404911 -116866533 + MER88 LTR ERVL 79 173 -291 1412 252 78 38 chr9 25404474 25404522 -116866922 - MER74B LTR ERVL -74 548 503 2300 123 42 25 chr9 25404522 25404880 -116866564 + THE1B LTR MaLR 1 364 0 1412 252 78 38 chr9 25404880 25405308 -116866136 - MER74B LTR ERVL -119 503 53 361 259 48 95 chr9 25405506 25405695 -116865749 - MIR SINE MIR -75 187 8 255 295 0 0 chr9 25405730 25405791 -116865653 + L2 LINE L2 3211 3271 -1 1687 164 0 0 chr9 25405928 25406190 -116865254 + AluJo SINE Alu 18 279 -33 2074 139 128 8 chr9 25406192 25406560 -116864884 - MSTA LTR MaLR -16 412 1 550 293 27 59 chr9 25406621 25406732 -116864712 - MIR SINE MIR -3 259 146 459 0 0 0 chr9 25406732 25406783 -116864661 + (TA)n Simple_repeat Simple_repeat 2 52 0 550 293 27 59 chr9 25406783 25406927 -116864517 - MIR SINE MIR -116 146 12 271 244 47 23 chr9 25408876 25408962 -116862482 + MIR3 SINE MIR 110 197 -11 23 0 0 0 chr9 25409535 25409558 -116861886 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr9 25410225 25410250 -116861194 + AT_rich Low_complexity Low_complexity 1 25 0 2036 99 0 41 chr9 25410315 25410609 -116860835 + AluSc SINE Alu 1 282 -27 202 161 0 0 chr9 25411238 25411269 -116860175 + MIR SINE MIR 33 63 -145 308 242 112 56 chr9 25412185 25412400 -116859044 - L1ME4a LINE L1 -1 6120 5894 425 281 204 43 chr9 25413015 25413452 -116857992 - MLT1J LTR MaLR -4 507 1 22 0 0 0 chr9 25413807 25413829 -116857615 + AT_rich Low_complexity Low_complexity 1 22 0 626 319 43 64 chr9 25413886 25414231 -116857213 - L3 LINE CR1 -103 1474 1137 338 323 165 28 chr9 25414347 25414632 -116856812 - L3 LINE CR1 -776 801 478 183 341 47 0 chr9 25414798 25414883 -116856561 - MIR SINE MIR -13 249 161 2292 229 142 34 chr9 25415017 25415063 -116856381 - MER21B LTR ERV1 -124 739 699 2811 192 80 62 chr9 25415063 25415772 -116855672 + MER72 LTR ERV1 1 722 0 2292 229 142 34 chr9 25415772 25416381 -116855063 - MER21B LTR ERV1 -164 699 13 2315 98 0 31 chr9 25417139 25417457 -116853987 + AluSq SINE Alu 1 308 -5 239 263 109 29 chr9 25417494 25417631 -116853813 - MIR SINE MIR -12 250 103 252 247 12 49 chr9 25417750 25417831 -116853613 + GA-rich Low_complexity Low_complexity 5 82 0 215 261 61 61 chr9 25417977 25418092 -116853352 - L2 LINE L2 -2 3311 3197 260 331 93 26 chr9 25419269 25419420 -116852024 - L2 LINE L2 -5 3267 3107 727 247 35 11 chr9 25419710 25419884 -116851560 + MIR SINE MIR 72 249 -13 266 250 46 56 chr9 25421113 25421221 -116850223 - MIR SINE MIR -34 228 122 210 348 152 5 chr9 25421738 25421922 -116849522 - MIR SINE MIR -40 222 12 1537 156 43 112 chr9 25422014 25422406 -116849038 + MLT1A1 LTR MaLR 1 365 0 360 0 0 0 chr9 25422443 25422483 -116848961 + (TA)n Simple_repeat Simple_repeat 1 40 0 180 0 0 0 chr9 25423611 25423631 -116847813 + (GA)n Simple_repeat Simple_repeat 2 21 0 993 185 62 120 chr9 25426170 25426538 -116844906 + MLT1A1 LTR MaLR 19 365 0 183 311 204 0 chr9 25426654 25426786 -116844658 - MIR SINE MIR -4 258 100 464 279 71 49 chr9 25426874 25427100 -116844344 + MIR SINE MIR 18 248 -14 21 0 0 0 chr9 25427461 25427482 -116843962 + AT_rich Low_complexity Low_complexity 1 21 0 2319 164 71 23 chr9 25428080 25428556 -116842888 - L1MC2 LINE L1 -9 6335 5837 266 223 36 161 chr9 25428826 25428938 -116842506 - L2 LINE L2 -6 3266 3169 237 65 0 0 chr9 25430120 25430151 -116841293 + (CA)n Simple_repeat Simple_repeat 2 32 0 225 211 0 0 chr9 25430882 25430939 -116840505 + (TAG)n Simple_repeat Simple_repeat 3 59 0 238 346 29 19 chr9 25431033 25431137 -116840307 - MIR SINE MIR -67 141 37 246 293 71 29 chr9 25431400 25431540 -116839904 - MIR SINE MIR -5 257 112 767 272 155 13 chr9 25431564 25431880 -116839564 - L2 LINE L2 0 3313 2953 254 398 49 0 chr9 25431882 25432005 -116839439 - L2 LINE L2 -17 3255 3127 380 205 0 13 chr9 25432082 25432160 -116839284 + MER96B DNA MER1_type? 159 235 -182 262 241 24 24 chr9 25432441 25432524 -116838920 + MER103 DNA DNA 2 84 -82 231 265 72 12 chr9 25432651 25432734 -116838710 + L1MC4 LINE L1 6615 6702 -1340 * 287 244 0 0 chr9 25432708 25432786 -116838658 - L1MC4 LINE L1 -1340 6702 6625 467 271 106 35 chr9 25432792 25432962 -116838482 - MIR SINE MIR -73 189 8 427 289 176 5 chr9 25434405 25434592 -116836852 + MIR SINE MIR 44 262 0 690 286 75 0 chr9 25435894 25436107 -116835337 + MIR SINE MIR 31 259 -3 667 241 18 6 chr9 25436359 25436525 -116834919 - MLT1D LTR MaLR 0 505 338 678 251 67 0 chr9 25436534 25436729 -116834715 - MER3 DNA MER1_type -1 208 1 2336 118 0 3 chr9 25437171 25437484 -116833960 - AluSx SINE Alu 0 312 1 2214 149 0 3 chr9 25437870 25438219 -116833225 + MER7A DNA MER2_type 1 346 0 551 193 226 6 chr9 25438429 25438610 -116832834 - MIR SINE MIR 0 262 42 323 301 11 0 chr9 25438851 25438944 -116832500 + MIR SINE MIR 67 160 -102 1965 175 131 0 chr9 25438969 25439382 -116832062 + MLT2B2 LTR ERVL 1 357 -40 203 161 0 0 chr9 25439382 25439413 -116832031 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 318 266 83 28 chr9 25440043 25440152 -116831292 - MLT1A1 LTR MaLR -72 302 188 309 68 0 0 chr9 25440165 25440209 -116831235 + (CA)n Simple_repeat Simple_repeat 2 45 0 354 61 0 0 chr9 25440210 25440259 -116831185 + (GA)n Simple_repeat Simple_repeat 1 49 0 705 170 50 7 chr9 25440284 25440425 -116831019 - MLT1A1 LTR MaLR -218 147 1 220 309 59 52 chr9 25440661 25440797 -116830647 + L2 LINE L2 2849 2985 -328 349 130 0 0 chr9 25440925 25440979 -116830465 - L2 LINE L2 -35 3278 3225 404 269 94 25 chr9 25442079 25442239 -116829205 - MLT1J2 LTR MaLR 0 450 280 486 321 61 6 chr9 25442625 25442790 -116828654 + MIR SINE MIR 18 191 -71 1443 211 44 6 chr9 25442801 25443161 -116828283 - MER89 LTR ERV1 -10 549 176 207 0 0 0 chr9 25443966 25443989 -116827455 + (TG)n Simple_repeat Simple_repeat 2 24 0 189 249 118 124 chr9 25444070 25444239 -116827205 + L3 LINE CR1 1052 1219 -358 1667 207 52 86 chr9 25445116 25445158 -116826286 - MLT2B1 LTR ERVL 0 520 478 309 26 0 0 chr9 25445158 25445196 -116826248 + (TG)n Simple_repeat Simple_repeat 2 39 0 1667 207 52 86 chr9 25445196 25445689 -116825755 - MLT2B1 LTR ERVL -42 478 3 459 281 54 60 chr9 25446062 25446229 -116825215 + MIR SINE MIR 2 167 -95 1936 253 21 32 chr9 25447337 25447410 -116824034 + L1ME1 LINE L1 5398 5470 -696 252 0 0 0 chr9 25447410 25447438 -116824006 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 1936 253 21 32 chr9 25447438 25447543 -116823901 + L1ME1 LINE L1 5470 5575 -591 1955 142 0 28 chr9 25447543 25447856 -116823588 + AluSx SINE Alu 2 306 0 1936 253 21 32 chr9 25447856 25448335 -116823109 + L1ME1 LINE L1 5575 6050 -116 449 135 34 11 chr9 25448329 25448418 -116823026 + L1ME LINE L1 5695 5785 -377 * 258 281 44 0 chr9 25448426 25448540 -116822904 + L1MA10 LINE L1 6190 6308 -26 246 192 0 0 chr9 25448607 25448659 -116822785 + (TA)n Simple_repeat Simple_repeat 2 53 0 651 263 153 46 chr9 25448752 25449125 -116822319 + MLT1K LTR MaLR 151 563 -25 539 250 107 0 chr9 25449390 25449558 -116821886 + MIR SINE MIR 73 258 -4 1293 213 45 79 chr9 25449801 25450188 -116821256 - MER63B DNA MER1_type -635 427 55 1896 145 7 3 chr9 25450188 25450477 -116820967 - AluSx SINE Alu -22 290 1 1293 213 45 79 chr9 25450477 25450531 -116820913 - MER63B DNA MER1_type -1007 55 1 571 310 42 64 chr9 25450912 25451225 -116820219 + L3 LINE CR1 1164 1469 -108 316 326 69 87 chr9 25451494 25451883 -116819561 - L2 LINE L2 0 3272 2891 582 250 132 45 chr9 25452130 25452350 -116819094 + L2 LINE L2 2836 3074 -239 523 335 59 28 chr9 25452623 25452945 -116818499 + L3 LINE CR1 1146 1477 -100 635 275 42 10 chr9 25452992 25453185 -116818259 - MIR SINE MIR -3 259 61 248 275 22 22 chr9 25453435 25453526 -116817918 + L2 LINE L2 3161 3251 -62 757 280 67 84 chr9 25455167 25455631 -116815813 - LTR16C LTR ERVL 0 491 36 292 237 52 37 chr9 25456572 25456707 -116814737 + Charlie8 DNA MER1_type 369 505 -1912 24 91 0 0 chr9 25456774 25456840 -116814604 + AT_rich Low_complexity Low_complexity 1 66 0 26 30 0 0 chr9 25456969 25457002 -116814442 + AT_rich Low_complexity Low_complexity 1 33 0 209 56 0 83 chr9 25458188 25458224 -116813220 + L3 LINE CR1 1523 1555 -22 307 325 36 36 chr9 25458439 25458605 -116812839 + L3b LINE CR1 1157 1322 -261 6867 63 7 0 chr9 25459547 25460661 -116810783 + L1PA7 LINE L1 5016 6136 -18 450 0 0 0 chr9 25460662 25460712 -116810732 + (TA)n Simple_repeat Simple_repeat 1 50 0 255 233 139 58 chr9 25461340 25461426 -116810018 - L2 LINE L2 0 3272 3180 348 24 0 0 chr9 25461913 25461954 -116809490 + (CA)n Simple_repeat Simple_repeat 1 41 0 270 0 0 0 chr9 25461986 25462016 -116809428 + (CA)n Simple_repeat Simple_repeat 2 31 0 553 241 42 12 chr9 25462910 25463076 -116808368 - Charlie8 DNA MER1_type -2153 264 94 370 299 198 16 chr9 25463902 25464089 -116807355 - L2 LINE L2 0 3313 3093 315 244 16 94 chr9 25464278 25464405 -116807039 + MIR SINE MIR 103 219 -43 677 184 24 8 chr9 25464665 25464790 -116806654 - FLAM_A SINE Alu -6 127 1 22 0 0 0 chr9 25466159 25466181 -116805263 + AT_rich Low_complexity Low_complexity 1 22 0 519 263 40 73 chr9 25466733 25467007 -116804437 + L2 LINE L2 3048 3312 -1 225 0 0 0 chr9 25467175 25467200 -116804244 + (TAAAA)n Simple_repeat Simple_repeat 1 25 0 2309 100 0 3 chr9 25469164 25469474 -116801970 - AluSg SINE Alu 0 310 2 1381 167 41 56 chr9 25469755 25470024 -116801420 + AluJb SINE Alu 1 265 -47 403 286 83 83 chr9 25470451 25470691 -116800753 - L2 LINE L2 -1 3271 3032 1011 191 11 21 chr9 25470691 25470880 -116800564 - MER5A DNA MER1_type -2 187 1 425 200 17 113 chr9 25470912 25471027 -116800417 + MER5A DNA MER1_type 9 112 -77 612 226 126 6 chr9 25471064 25471223 -116800221 - MER5B DNA MER1_type 0 178 1 452 261 82 23 chr9 25472358 25472510 -116798934 - MIR SINE MIR -65 143 7 1633 102 19 8 chr9 25472885 25473149 -116798295 + MER39 LTR ERV1 441 707 0 1490 104 59 0 chr9 25473198 25473400 -116798044 - AluSc SINE Alu -11 298 85 524 328 64 60 chr9 25473509 25473975 -116797469 + L2 LINE L2 2805 3272 0 836 241 69 4 chr9 25474440 25474714 -116796730 + L1MC4 LINE L1 7107 7398 -644 1489 214 123 12 chr9 25474754 25475175 -116796269 - MLT1F LTR MaLR 0 542 75 2174 175 8 56 chr9 25475178 25475658 -116795786 - LTR9 LTR ERV1 0 612 156 4852 194 56 31 chr9 25477377 25478648 -116792796 - L1 LINE L1 -1993 4153 2852 1475 182 30 61 chr9 25479556 25479853 -116791591 - AluJo SINE Alu -24 288 1 894 287 42 12 chr9 25480207 25480611 -116790833 + L1MC1 LINE L1 5401 5816 -1992 487 263 6 29 chr9 25481297 25481472 -116789972 - MER5B DNA MER1_type -4 174 4 2327 160 18 61 chr9 25481784 25482229 -116789215 + MSTB LTR MaLR 1 426 0 322 150 150 18 chr9 25482836 25482949 -116788495 + Charlie4 DNA MER1_type 1740 1867 -94 1236 138 0 11 chr9 25483049 25483227 -116788217 + AluSg/x SINE Alu 122 299 -13 1936 149 9 0 chr9 25483227 25483550 -116787894 + L1MC1 LINE L1 6005 6330 -3 28 48 0 0 chr9 25483768 25483810 -116787634 + AT_rich Low_complexity Low_complexity 1 42 0 211 298 137 16 chr9 25483847 25483971 -116787473 - L2 LINE L2 -225 3047 2909 1577 162 16 13 chr9 25484615 25484929 -116786515 - L1MA4 LINE L1 -7 6293 5979 470 292 107 6 chr9 25485338 25485516 -116785928 - MIR SINE MIR -31 231 36 754 234 152 32 chr9 25485704 25486207 -116785237 - LTR50 LTR ERVL -19 776 1 288 211 40 26 chr9 25486731 25486788 -116784656 + AluJ/FRAM SINE Alu 224 284 -18 288 0 0 0 chr9 25486788 25486820 -116784624 + (CCAA)n Simple_repeat Simple_repeat 1 32 0 288 211 40 26 chr9 25486820 25486838 -116784606 + AluJ/FRAM SINE Alu 284 300 -2 331 345 63 5 chr9 25487221 25487427 -116784017 + L2 LINE L2 2685 2902 -412 213 254 48 0 chr9 25487754 25487817 -116783627 + L2 LINE L2 3202 3267 -5 1725 159 0 41 chr9 25488292 25488630 -116782814 + AluSx SINE Alu 1 326 0 725 258 123 19 chr9 25489505 25489815 -116781629 + MLT1J2 LTR MaLR 85 426 -24 180 0 0 0 chr9 25490054 25490074 -116781370 + (TA)n Simple_repeat Simple_repeat 2 21 0 307 333 90 19 chr9 25490141 25490297 -116781147 - MIR SINE MIR -94 168 2 1203 195 45 7 chr9 25491863 25492150 -116779294 - MER33 DNA MER1_type 0 324 27 364 123 35 0 chr9 25493001 25493058 -116778386 + MER41D LTR ERV1 499 557 0 2363 150 60 29 chr9 25493058 25493388 -116778056 - L1MA9 LINE L1 -164 6148 5830 351 0 0 0 chr9 25493388 25493427 -116778017 + (TG)n Simple_repeat Simple_repeat 2 40 0 290 96 0 19 chr9 25493428 25493480 -116777964 + (TA)n Simple_repeat Simple_repeat 1 51 0 2363 150 60 29 chr9 25493480 25493599 -116777845 - L1MA9 LINE L1 -481 5831 5683 690 259 48 41 chr9 25495687 25495957 -116775487 + L1ME3A LINE L1 5842 6113 -57 355 293 101 25 chr9 25496524 25496722 -116774722 + MIR SINE MIR 36 248 -14 1189 137 71 0 chr9 25496744 25496864 -116774580 + AluJo SINE Alu 1 140 -172 195 42 0 0 chr9 25496864 25496888 -116774556 + (TAA)n Simple_repeat Simple_repeat 2 25 0 1189 137 71 0 chr9 25496888 25496950 -116774494 + AluJo SINE Alu 140 196 -116 773 181 201 44 chr9 25497943 25498002 -116773442 - L1MC4a LINE L1 -1849 5959 5911 1857 164 3 28 chr9 25498002 25498320 -116773124 - AluSx SINE Alu -2 310 1 773 181 201 44 chr9 25498320 25498509 -116772935 - L1MC4a LINE L1 -1897 5911 5672 2523 80 0 0 chr9 25498523 25498825 -116772619 - AluY SINE Alu -8 303 2 1198 230 72 43 chr9 25498977 25499122 -116772322 - LTR2 LTR ERV1 -84 365 226 186 43 0 0 chr9 25499122 25499145 -116772299 + (CAGAA)n Simple_repeat Simple_repeat 1 23 0 1198 230 72 43 chr9 25499145 25499347 -116772097 - LTR2 LTR ERV1 -223 226 8 1091 156 0 0 chr9 25499347 25499507 -116771937 - AluSx SINE Alu -118 194 35 481 271 251 53 chr9 25499507 25499806 -116771638 + MLT1F1 LTR MaLR 124 506 -61 3705 84 18 6 chr9 25499811 25500321 -116771123 + MER4E LTR ERV1 1 516 -250 4378 149 12 26 chr9 25500771 25501511 -116769933 + L1MB3 LINE L1 5452 6181 -2 2039 208 26 38 chr9 25501965 25502224 -116769220 + L1MC3 LINE L1 6609 6861 -924 1956 117 3 69 chr9 25502224 25502557 -116768887 + AluSx SINE Alu 1 311 -1 2039 208 26 38 chr9 25502557 25502792 -116768652 + L1MC3 LINE L1 6861 7097 -688 245 328 43 0 chr9 25502792 25502908 -116768536 + MLT1F1 LTR MaLR 35 155 -412 2032 161 18 29 chr9 25502909 25503253 -116768191 + L1MC3 LINE L1 7240 7581 -204 2258 113 3 0 chr9 25503253 25503555 -116767889 + AluSx SINE Alu 1 303 -9 2032 161 18 29 chr9 25503555 25503594 -116767850 + L1MC3 LINE L1 7581 7619 -166 266 212 106 44 chr9 25504244 25504357 -116767087 - L2 LINE L2 -1 3312 3193 2080 134 0 0 chr9 25504590 25504881 -116766563 + AluSx SINE Alu 1 291 -21 495 123 0 203 chr9 25504897 25505035 -116766409 + L1MB3 LINE L1 5677 5786 -385 258 176 0 0 chr9 25505042 25505093 -116766351 + (TA)n Simple_repeat Simple_repeat 1 51 0 254 130 43 0 chr9 25505096 25505142 -116766302 - L1M2 LINE L1 -507 5793 5746 202 150 25 0 chr9 25505152 25505192 -116766252 + (TA)n Simple_repeat Simple_repeat 1 41 0 1315 147 4 37 chr9 25505193 25505438 -116766006 + L1MB3 LINE L1 5776 6012 -171 323 318 47 27 chr9 25505584 25505732 -116765712 + L1MEc LINE L1 2024 2174 -4222 297 164 0 41 chr9 25505738 25505811 -116765633 + L1MC3 LINE L1 7716 7785 0 * 1828 237 83 8 chr9 25505805 25506415 -116765029 + L1MEc LINE L1 2170 2776 -3439 994 219 4 82 chr9 25506420 25506653 -116764791 - MER58C DNA MER1_type 0 215 1 1396 225 66 12 chr9 25506666 25507088 -116764356 + L1MEc LINE L1 3325 3769 -2446 7493 93 5 0 chr9 25507202 25508185 -116763259 - HERVK14 LTR ERVK -4957 988 1 3804 103 16 51 chr9 25508185 25508798 -116762646 - LTR14B LTR ERVK 0 608 17 436 275 23 88 chr9 25508819 25509081 -116762363 - MER21B LTR ERV1 -611 252 8 492 225 108 25 chr9 25509440 25509560 -116761884 - MSTC LTR MaLR -298 130 1 1225 220 112 1 chr9 25511623 25511971 -116759473 - MLT1F1 LTR MaLR -147 395 1 711 331 37 37 chr9 25513982 25514332 -116757112 + MLT1I LTR MaLR 58 407 -2 22 70 0 0 chr9 25514670 25514713 -116756731 + AT_rich Low_complexity Low_complexity 1 43 0 821 121 24 116 chr9 25514724 25514931 -116756513 - L1MA7 LINE L1 0 6291 6104 583 281 105 32 chr9 25515324 25515738 -116755706 + MLT1H LTR MaLR 77 555 0 736 214 191 58 chr9 25516239 25516584 -116754860 + MLT1J1 LTR MaLR 2 413 -37 274 295 0 13 chr9 25517163 25517241 -116754203 + MIR SINE MIR 69 145 -117 499 257 59 0 chr9 25517258 25517394 -116754050 - MER5A DNA MER1_type 0 189 46 1717 181 16 87 chr9 25517398 25517447 -116753997 - MLT2D LTR ERVL -9 405 354 324 48 0 0 chr9 25517447 25517489 -116753955 + (TG)n Simple_repeat Simple_repeat 2 43 0 1717 181 16 87 chr9 25517489 25517875 -116753569 - MLT2D LTR ERVL -60 354 1 548 107 27 0 chr9 25518025 25518100 -116753344 - AluSq SINE Alu -18 295 219 996 63 0 120 chr9 25518103 25518261 -116753183 - AluSq SINE Alu -174 139 1 260 224 40 13 chr9 25519847 25519923 -116751521 + L1ME4a LINE L1 6044 6121 0 414 0 0 0 chr9 25520350 25520396 -116751048 + (CA)n Simple_repeat Simple_repeat 2 47 0 1661 218 86 45 chr9 25520396 25520852 -116750592 + MLT1D LTR MaLR 28 505 0 1361 149 20 64 chr9 25521926 25521983 -116749461 + AluJo SINE Alu 60 118 -194 2295 45 0 45 chr9 25521983 25522275 -116749169 - AluY SINE Alu -23 288 10 1361 149 20 64 chr9 25522275 25522466 -116748978 + AluJo SINE Alu 118 297 -15 768 254 127 19 chr9 25522547 25522815 -116748629 + MLT1J2 LTR MaLR 1 297 -153 4908 183 72 13 chr9 25524048 25525593 -116745851 - L1MC2 LINE L1 0 6344 4721 273 71 89 89 chr9 25525935 25525991 -116745453 + MLT1I LTR MaLR 342 397 -12 845 228 71 14 chr9 25526767 25526978 -116744466 + MER58A DNA MER1_type 2 224 0 440 176 56 120 chr9 25527156 25527298 -116744146 + L1ME3A LINE L1 6027 6159 -11 1231 187 28 5 chr9 25527622 25527836 -116743608 + MER20 DNA MER1_type 1 219 0 276 252 63 36 chr9 25527841 25527969 -116743475 + MER5A DNA MER1_type 2 120 -58 533 292 87 70 chr9 25528351 25528824 -116742620 - L2 LINE L2 -14 3299 2819 194 289 22 44 chr9 25528856 25528946 -116742498 + MIR SINE MIR 2 89 -173 2178 112 0 20 chr9 25528948 25529253 -116742191 + AluSx SINE Alu 1 299 -13 506 162 55 60 chr9 25529319 25529501 -116741943 + MER58 DNA MER1_type 28 2412 -8 1810 144 42 0 chr9 25531877 25532161 -116739283 - MER58B DNA MER1_type 0 341 46 1624 196 35 127 chr9 25532587 25532733 -116738711 + MLT2B1 LTR ERVL 1 159 -361 1507 193 216 34 chr9 25532733 25533173 -116738271 - MLT2B1 LTR ERVL 0 520 1 1624 196 35 127 chr9 25533173 25533591 -116737853 + MLT2B1 LTR ERVL 159 513 -7 435 255 173 41 chr9 25533638 25533979 -116737465 + L2 LINE L2 2928 3313 0 261 0 0 0 chr9 25536267 25536296 -116735148 + (A)n Simple_repeat Simple_repeat 1 29 0 307 276 67 9 chr9 25536296 25536401 -116735043 + MER103 DNA DNA 1 111 -55 828 158 0 66 chr9 25537723 25537875 -116733569 + FRAM SINE Alu 4 145 -31 198 0 0 0 chr9 25537875 25537897 -116733547 + (T)n Simple_repeat Simple_repeat 1 22 0 558 339 41 9 chr9 25538419 25538640 -116732804 - MIR SINE MIR -1 261 34 259 355 37 71 chr9 25539341 25539693 -116731751 + L2 LINE L2 2812 3151 -121 1242 180 28 0 chr9 25541288 25541505 -116729939 + MER58A DNA MER1_type 2 224 0 842 97 0 8 chr9 25542339 25542463 -116728981 + MER107 DNA MER1_type 1 123 -74 306 36 0 55 chr9 25542611 25542666 -116728778 + (CAAAA)n Simple_repeat Simple_repeat 2 53 0 1372 97 57 48 chr9 25542694 25542922 -116728522 + MER30 DNA MER1_type 1 230 0 379 236 47 39 chr9 25543158 25543285 -116728159 + MIR SINE MIR 119 246 -16 405 335 88 21 chr9 25544874 25545113 -116726331 - MIR SINE MIR -6 256 2 264 285 15 66 chr9 25546641 25546778 -116724666 + MIR3 SINE MIR 1 130 -78 206 294 193 46 chr9 25546966 25547075 -116724369 + MIR SINE MIR 22 146 -116 1510 211 65 34 chr9 25548382 25548714 -116722730 + MSTD LTR MaLR 1 348 -48 3258 107 62 2 chr9 25548714 25549211 -116722233 + L1PA10 LINE L1 5642 6168 0 1510 211 65 34 chr9 25549211 25549262 -116722182 + MSTD LTR MaLR 348 396 0 356 213 86 72 chr9 25549362 25549483 -116721961 + MER5A DNA MER1_type 52 189 0 347 309 115 18 chr9 25549497 25549662 -116721782 - MER5A DNA MER1_type -6 183 3 306 107 0 0 chr9 25550938 25550994 -116720450 + (CA)n Simple_repeat Simple_repeat 2 57 0 208 119 48 0 chr9 25551274 25551316 -116720128 + A-rich Low_complexity Low_complexity 2 45 0 448 336 111 10 chr9 25551716 25551924 -116719520 + MIR SINE MIR 2 230 -32 346 261 96 21 chr9 25552093 25552244 -116719200 + MER5A DNA MER1_type 8 187 -2 239 194 69 28 chr9 25553520 25553592 -116717852 + MIR SINE MIR 132 206 -56 1909 103 46 28 chr9 25556177 25556287 -116715157 + AluSg SINE Alu 11 118 -192 213 65 0 0 chr9 25556287 25556318 -116715126 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1909 103 46 28 chr9 25556318 25556489 -116714955 + AluSg SINE Alu 118 297 -13 282 278 119 26 chr9 25557050 25557201 -116714243 + MIR3 SINE MIR 20 184 -24 216 0 0 0 chr9 25558466 25558490 -116712954 + (A)n Simple_repeat Simple_repeat 1 24 0 180 0 0 0 chr9 25560737 25560757 -116710687 + (A)n Simple_repeat Simple_repeat 1 20 0 21 71 0 0 chr9 25562148 25562190 -116709254 + AT_rich Low_complexity Low_complexity 1 42 0 27 49 0 0 chr9 25562361 25562402 -116709042 + AT_rich Low_complexity Low_complexity 1 41 0 304 330 55 0 chr9 25565621 25565712 -116705732 - MIR SINE MIR -139 123 28 239 320 0 48 chr9 25565758 25565861 -116705583 - MIR3 SINE MIR -6 202 105 230 125 21 0 chr9 25566589 25566637 -116704807 + (TG)n Simple_repeat Simple_repeat 1 49 0 1480 132 24 4 chr9 25567247 25567498 -116703946 - Tigger3(Golem) DNA MER2_type -2 3027 2772 538 165 134 16 chr9 25567495 25567622 -116703822 - Tigger3(Golem) DNA MER2_type -2887 142 1 * 2350 78 3 10 chr9 25568209 25568516 -116702928 - AluY SINE Alu -6 305 1 54 40 0 0 chr9 25568649 25568724 -116702720 + AT_rich Low_complexity Low_complexity 1 75 0 285 265 85 45 chr9 25568903 25569126 -116702318 + Charlie7 DNA MER1_type 358 589 -2023 369 0 0 0 chr9 25571559 25571600 -116699844 + (T)n Simple_repeat Simple_repeat 1 41 0 717 213 91 25 chr9 25572274 25572471 -116698973 + MER58C DNA MER1_type 2 211 -4 959 213 38 5 chr9 25572693 25572904 -116698540 - MER20 DNA MER1_type -1 218 1 21 0 0 0 chr9 25574023 25574044 -116697400 + AT_rich Low_complexity Low_complexity 1 21 0 270 0 0 0 chr9 25574698 25574728 -116696716 + (A)n Simple_repeat Simple_repeat 1 30 0 528 238 41 8 chr9 25574794 25574916 -116696528 - MER5A DNA MER1_type -63 126 1 2129 119 3 22 chr9 25575667 25575978 -116695466 - AluSp SINE Alu -8 305 1 1646 158 134 3 chr9 25577309 25577607 -116693837 - MER1B DNA MER1_type 0 337 1 415 306 46 9 chr9 25578020 25578128 -116693316 + L2 LINE L2 3156 3267 -5 517 282 78 13 chr9 25580013 25580239 -116691205 - MIR SINE MIR -19 243 3 2143 93 17 0 chr9 25580394 25580684 -116690760 - AluSx SINE Alu -17 295 1 376 324 56 21 chr9 25583847 25583989 -116687455 - MIR3 SINE MIR -17 191 45 312 344 123 7 chr9 25585606 25585760 -116685684 + MIR SINE MIR 19 190 -72 380 286 98 0 chr9 25585862 25585974 -116685470 - MIR SINE MIR -8 254 132 2166 64 46 4 chr9 25586913 25587194 -116684250 - AluY SINE Alu -18 293 1 2014 34 0 0 chr9 25587824 25588061 -116683383 + L1PA5 LINE L1 5905 6141 -13 264 313 62 42 chr9 25589471 25589615 -116681829 + L2 LINE L2 3118 3264 -8 22 0 0 0 chr9 25591543 25591565 -116679879 + AT_rich Low_complexity Low_complexity 1 22 0 2180 112 0 7 chr9 25591570 25591873 -116679571 - AluSq SINE Alu -12 301 1 1808 136 31 21 chr9 25591926 25592213 -116679231 - AluSg SINE Alu -20 290 1 268 305 45 51 chr9 25592546 25592723 -116678721 + MER5A DNA MER1_type 1 176 -13 2064 128 111 20 chr9 25593365 25593763 -116677681 + Tigger2a DNA MER2_type 1 434 0 328 22 0 0 chr9 25594823 25594869 -116676575 - L1P LINE L1 -849 5306 5261 3733 35 15 4 chr9 25594869 25595326 -116676118 + L1PA3 LINE L1 5693 6155 0 266 317 55 33 chr9 25599293 25599476 -116671968 + MER5A DNA MER1_type 3 189 0 503 257 95 14 chr9 25601742 25601890 -116669554 + MER117 DNA MER1_type 1 160 -37 1289 235 50 0 chr9 25602152 25602454 -116668990 + MER58B DNA MER1_type 10 326 -15 374 220 45 98 chr9 25604456 25604588 -116666856 + MIR SINE MIR 53 177 -85 257 170 38 19 chr9 25604873 25604926 -116666518 - MER5B DNA MER1_type 0 178 125 189 213 0 0 chr9 25604989 25605036 -116666408 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 385 243 0 0 chr9 25605036 25605110 -116666334 - FLAM SINE Alu -17 116 43 259 227 80 34 chr9 25605110 25605198 -116666246 - MER5B DNA MER1_type -86 92 1 211 295 72 78 chr9 25606057 25606250 -116665194 - MIR SINE MIR -58 204 13 198 0 0 0 chr9 25606852 25606874 -116664570 + (A)n Simple_repeat Simple_repeat 1 22 0 1882 145 0 14 chr9 25607028 25607325 -116664119 - AluSx SINE Alu -19 293 1 25 51 0 0 chr9 25607769 25607808 -116663636 + AT_rich Low_complexity Low_complexity 1 39 0 329 308 164 21 chr9 25608078 25608364 -116663080 - L2 LINE L2 -34 3279 2953 267 284 93 76 chr9 25608658 25608894 -116662550 + L2 LINE L2 2937 3176 -96 420 239 71 49 chr9 25612011 25612195 -116659249 - MIR SINE MIR -57 205 18 1304 273 77 14 chr9 25613256 25613700 -116657744 + LTR38 LTR ERV1 85 556 0 188 283 43 0 chr9 25616106 25616152 -116655292 - L3b LINE CR1 -165 1418 1371 186 71 0 0 chr9 25616498 25616526 -116654918 + (TAAAAA)n Simple_repeat Simple_repeat 2 29 0 1564 191 24 14 chr9 25616674 25616968 -116654476 + AluJo SINE Alu 1 297 -15 421 131 47 131 chr9 25618808 25618915 -116652529 - Tigger7 DNA MER2_type 0 2487 2390 1186 190 59 16 chr9 25618919 25619172 -116652272 - Tigger7 DNA MER2_type -2221 266 3 22 0 0 0 chr9 25619656 25619678 -116651766 + AT_rich Low_complexity Low_complexity 1 22 0 1499 144 29 18 chr9 25620631 25620908 -116650536 + L1MB4 LINE L1 5900 6179 -1 2079 116 38 0 chr9 25624209 25624501 -116646943 - AluSx SINE Alu -9 303 1 592 243 34 84 chr9 25626143 25626192 -116645252 + MER34 LTR ERV1 1 51 -491 1872 155 0 31 chr9 25626192 25626509 -116644935 - AluSx SINE Alu -5 307 1 592 243 34 84 chr9 25626509 25626755 -116644689 + MER34 LTR ERV1 51 281 -261 22 0 0 0 chr9 25627964 25627986 -116643458 + AT_rich Low_complexity Low_complexity 1 22 0 327 261 43 26 chr9 25628610 25628725 -116642719 - MER5A DNA MER1_type -65 124 8 403 327 30 74 chr9 25629086 25629288 -116642156 + MIR3 SINE MIR 8 200 -8 330 297 76 14 chr9 25630474 25630619 -116640825 + MER103 DNA DNA 2 155 -11 3561 176 42 9 chr9 25630695 25631434 -116640010 + L1MA6 LINE L1 5529 6291 -9 403 91 27 45 chr9 25631434 25631544 -116639900 + (TA)n Simple_repeat Simple_repeat 1 108 0 211 235 224 12 chr9 25632749 25632834 -116638610 - MIR SINE MIR -62 146 44 21 36 0 0 chr9 25637127 25637155 -116634289 + AT_rich Low_complexity Low_complexity 1 28 0 1887 122 32 4 chr9 25639245 25639524 -116631920 + AluSx SINE Alu 1 287 -25 196 53 53 0 chr9 25640935 25640973 -116630471 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 188 281 122 76 chr9 25641785 25642088 -116629356 - L2 LINE L2 0 3313 2997 1665 199 66 49 chr9 25642096 25642584 -116628860 + MLT1D LTR MaLR 1 496 -9 640 264 254 0 chr9 25642597 25642963 -116628481 - L2 LINE L2 -323 2990 2526 198 91 0 0 chr9 25643163 25643196 -116628248 + (TA)n Simple_repeat Simple_repeat 2 34 0 207 0 0 0 chr9 25644281 25644304 -116627140 + (A)n Simple_repeat Simple_repeat 1 23 0 2323 86 0 10 chr9 25645676 25645989 -116625455 + AluY SINE Alu 1 310 -1 298 174 0 0 chr9 25647021 25647067 -116624377 + Alu SINE Alu 4 49 -251 309 151 0 0 chr9 25647072 25647125 -116624319 + Alu SINE Alu 239 291 -11 183 222 253 20 chr9 25647134 25647233 -116624211 - MIR SINE MIR -93 169 48 290 250 31 21 chr9 25648263 25648359 -116623085 - L2 LINE L2 -16 3256 3160 207 0 0 0 chr9 25648486 25648509 -116622935 + (A)n Simple_repeat Simple_repeat 1 23 0 495 0 0 0 chr9 25651726 25651781 -116619663 + (A)n Simple_repeat Simple_repeat 1 55 0 1926 146 19 29 chr9 25653251 25653428 -116618016 - AluJb SINE Alu 0 312 138 2200 73 30 13 chr9 25653428 25653730 -116617714 - AluY SINE Alu -4 307 1 1926 146 19 29 chr9 25653730 25653867 -116617577 - AluJb SINE Alu -174 138 1 1251 116 8 139 chr9 25654078 25654345 -116617099 + AluSg/x SINE Alu 80 311 -1 231 315 99 77 chr9 25655648 25655659 -116615785 - L2 LINE L2 -40 3232 3223 2331 62 0 16 chr9 25655659 25655963 -116615481 + AluY SINE Alu 1 299 -12 231 315 99 77 chr9 25655963 25656173 -116615271 - L2 LINE L2 -49 3223 3006 260 315 142 16 chr9 25656379 25656506 -116614938 - MIR3 SINE MIR -32 176 34 201 195 0 0 chr9 25658528 25658569 -116612875 + A-rich Low_complexity Low_complexity 1 41 0 249 279 115 96 chr9 25658921 25659009 -116612435 - MIR SINE MIR -31 231 146 1971 97 104 0 chr9 25659009 25659278 -116612166 - AluSq SINE Alu -16 297 1 249 279 115 96 chr9 25659278 25659397 -116612047 - MIR SINE MIR -116 146 20 462 248 18 0 chr9 25659439 25659548 -116611896 + MER5B DNA MER1_type 68 178 0 225 329 12 0 chr9 25660052 25660134 -116611310 + MIR SINE MIR 113 195 -67 1996 181 110 27 chr9 25660160 25660755 -116610689 - Tigger7 DNA MER2_type -34 2553 1 271 230 149 0 chr9 25663143 25663217 -116608227 + MLT1B LTR MaLR 7 91 -299 330 118 0 0 chr9 25663233 25663284 -116608160 + MER47A DNA MER2_type 73 123 -243 1217 185 38 58 chr9 25663316 25663640 -116607804 + MLT1B LTR MaLR 83 390 0 1950 150 22 27 chr9 25663728 25664095 -116607349 + MER47A DNA MER2_type 1 365 -1 1534 195 0 25 chr9 25664507 25664825 -116606619 - AluJo SINE Alu -2 310 1 2132 116 3 7 chr9 25667012 25667315 -116604129 + AluSx SINE Alu 5 306 -6 182 247 82 55 chr9 25668774 25668847 -116602597 + MIR SINE MIR 69 143 -119 2292 110 3 3 chr9 25669395 25669705 -116601739 + AluSp SINE Alu 4 313 0 790 183 52 70 chr9 25670077 25670290 -116601154 + MIR SINE MIR 30 238 -24 259 227 165 10 chr9 25671093 25671190 -116600254 - MIR SINE MIR -61 147 36 228 372 61 7 chr9 25674042 25674190 -116597254 - MIR3 SINE MIR -17 191 36 926 199 206 27 chr9 25674353 25674786 -116596658 + Charlie1b DNA MER1_type 1 523 0 675 99 0 0 chr9 25675904 25676026 -116595418 - AluSg/x SINE Alu 0 316 195 318 283 184 9 chr9 25676246 25676458 -116594986 - L1MC/D LINE L1 -2024 5784 5536 184 311 67 83 chr9 25676491 25676684 -116594760 + MIR3 SINE MIR 9 198 -10 1380 200 0 8 chr9 25678100 25678350 -116593094 + AluJo SINE Alu 1 248 -64 372 344 63 11 chr9 25679987 25680176 -116591268 + L2 LINE L2 3114 3312 -1 182 57 0 86 chr9 25681524 25681559 -116589885 - L3 LINE CR1 -813 764 733 31 0 0 0 chr9 25682145 25682176 -116589268 + AT_rich Low_complexity Low_complexity 1 31 0 341 198 170 19 chr9 25682410 25682516 -116588928 + MIR SINE MIR 20 141 -67 261 0 0 0 chr9 25688064 25688093 -116583351 + (A)n Simple_repeat Simple_repeat 1 29 0 1826 192 66 6 chr9 25688319 25688684 -116582760 + MER47B DNA MER2_type 1 387 -31 468 153 0 12 chr9 25690056 25690141 -116581303 - MER45A DNA AcHobo 0 178 95 186 43 0 0 chr9 25693443 25693466 -116577978 + (CGG)n Simple_repeat Simple_repeat 2 24 0 207 0 0 0 chr9 25693503 25693526 -116577918 + (CCGCG)n Simple_repeat Simple_repeat 1 23 0 27 0 0 0 chr9 25693657 25693684 -116577760 + GC_rich Low_complexity Low_complexity 1 27 0 212 86 29 0 chr9 25696953 25696988 -116574456 + (CCCCAG)n Simple_repeat Simple_repeat 4 39 0 216 0 0 0 chr9 25702348 25702372 -116569072 + (CA)n Simple_repeat Simple_repeat 2 25 0 280 255 11 21 chr9 25703025 25703119 -116568325 + CT-rich Low_complexity Low_complexity 2 94 0 23 0 0 0 chr9 25705253 25705276 -116566168 + AT_rich Low_complexity Low_complexity 1 23 0 521 319 105 4 chr9 25706085 25706323 -116565121 + MIR SINE MIR 1 262 0 237 139 0 0 chr9 25708393 25708436 -116563008 + (TG)n Simple_repeat Simple_repeat 1 43 0 183 394 19 0 chr9 25708495 25708599 -116562845 - L2 LINE L2 -427 2887 2782 246 333 20 20 chr9 25709052 25709154 -116562290 + MIR3 SINE MIR 4 105 -103 746 253 160 0 chr9 25709200 25709394 -116562050 - MIR SINE MIR -27 235 11 314 253 72 0 chr9 25709785 25709868 -116561576 + L1ME4a LINE L1 5788 5876 -245 357 254 42 49 chr9 25709886 25710028 -116561416 + L1ME4a LINE L1 5978 6118 -3 674 271 108 5 chr9 25711782 25711996 -116559448 + MIR SINE MIR 15 250 -12 388 324 28 45 chr9 25712019 25712195 -116559249 - MER5B DNA MER1_type 0 178 6 306 370 82 7 chr9 25715963 25716109 -116555335 + L2 LINE L2 3111 3267 -5 279 290 184 68 chr9 25718664 25718871 -116552573 + MIR SINE MIR 30 260 -2 24 0 0 0 chr9 25719614 25719638 -116551806 + AT_rich Low_complexity Low_complexity 1 24 0 222 208 0 0 chr9 25721965 25722013 -116549431 + (CCA)n Simple_repeat Simple_repeat 2 49 0 607 80 10 10 chr9 25722468 25722568 -116548876 + (TC)n Simple_repeat Simple_repeat 2 101 0 204 40 0 0 chr9 25722587 25722612 -116548832 + (CA)n Simple_repeat Simple_repeat 1 25 0 2190 88 7 10 chr9 25724194 25724490 -116546954 - AluY SINE Alu -16 295 1 24 77 0 0 chr9 25724709 25724761 -116546683 + AT_rich Low_complexity Low_complexity 1 52 0 252 305 113 13 chr9 25726191 25726342 -116545102 + MIR SINE MIR 63 228 -34 424 273 32 123 chr9 25726453 25726522 -116544922 + MLT1L LTR MaLR 108 182 -433 2053 141 0 3 chr9 25726522 25726819 -116544625 + AluSx SINE Alu 1 296 -16 424 273 32 123 chr9 25726819 25727157 -116544287 + MLT1L LTR MaLR 182 582 -33 686 244 0 32 chr9 25727642 25727798 -116543646 - FRAM SINE Alu -19 157 7 542 314 44 13 chr9 25728380 25728606 -116542838 + MIR SINE MIR 29 261 -1 258 254 45 15 chr9 25729158 25729225 -116542219 + MIR3 SINE MIR 89 157 -51 939 182 223 20 chr9 25729618 25729865 -116541579 - AluJb SINE Alu -5 297 1 848 187 43 32 chr9 25729923 25730110 -116541334 + MER5A DNA MER1_type 1 189 0 997 268 32 22 chr9 25730134 25730516 -116540928 + MLT1H LTR MaLR 56 505 -44 220 300 0 0 chr9 25730859 25730909 -116540535 - MIR SINE MIR -127 81 32 2408 74 0 0 chr9 25731167 25731466 -116539978 + AluY SINE Alu 1 299 -12 29678 110 11 55 chr9 25732356 25738798 -116532646 - L1PA7 LINE L1 0 6154 12 1478 216 89 45 chr9 25738983 25739455 -116531989 - MLT1D LTR MaLR -12 493 1 262 200 47 47 chr9 25740198 25740283 -116531161 - HAL1b LINE L1 -1 1347 1263 991 230 121 32 chr9 25740336 25740775 -116530669 - HAL1b LINE L1 -262 1086 609 246 317 19 19 chr9 25740911 25741015 -116530429 - HAL1b LINE L1 -849 499 396 12783 186 37 14 chr9 25741415 25745646 -116525798 + L1PB2 LINE L1 2539 6867 0 512 212 89 22 chr9 25745780 25745959 -116525485 - L1MB8 LINE L1 -41 6137 5947 275 173 0 0 chr9 25745965 25746017 -116525427 + L1M4 LINE L1 5676 5727 -447 395 326 92 20 chr9 25746237 25746299 -116525145 + MIR SINE MIR 3 59 -203 1800 150 76 20 chr9 25746299 25746653 -116524791 + THE1C LTR MaLR 1 374 -1 395 326 92 20 chr9 25746653 25746786 -116524658 + MIR SINE MIR 59 212 -50 4089 179 35 17 chr9 25746834 25747671 -116523773 - L1MB2 LINE L1 -2 6169 5318 5672 168 68 18 chr9 25747687 25749597 -116521847 - L1PB2 LINE L1 -3 6148 4141 536 247 21 37 chr9 25749602 25749792 -116521652 - L1MB2 LINE L1 -816 5330 5144 546 278 111 61 chr9 25749906 25750330 -116521114 - L1MB8 LINE L1 -2047 5761 5317 26 0 0 0 chr9 25750344 25750370 -116521074 + AT_rich Low_complexity Low_complexity 1 26 0 245 104 0 0 chr9 25750876 25750924 -116520520 - L1MA9 LINE L1 -11 6301 6254 7084 151 7 32 chr9 25750963 25753349 -116518095 - L1MA5A LINE L1 -10 6287 3961 2303 144 8 3 chr9 25753367 25753729 -116517715 - THE1B LTR MaLR 0 364 1 10439 103 32 35 chr9 25753729 25755313 -116516131 - THE1B-int LTR MaLR 0 1580 1 521 96 0 14 chr9 25755313 25755386 -116516058 - THE1B LTR MaLR 0 375 304 1522 266 19 24 chr9 25755405 25755975 -116515469 - L1M1 LINE L1 -4501 1881 1228 2467 217 26 2 chr9 25755975 25756472 -116514972 + MLT2B1 LTR ERVL 12 520 0 256 236 37 60 chr9 25756473 25756605 -116514839 - L1M4c LINE L1 -3980 2754 2627 1650 185 3 23 chr9 25756605 25756907 -116514537 - AluJo SINE Alu -16 296 1 256 236 37 60 chr9 25756907 25756990 -116514454 - L1M4c LINE L1 -4107 2627 2544 811 236 23 110 chr9 25757020 25757166 -116514278 + AluJo SINE Alu 1 107 -205 278 26 26 0 chr9 25757166 25757205 -116514239 + (TA)n Simple_repeat Simple_repeat 2 41 0 811 236 23 110 chr9 25757205 25757367 -116514077 + AluJo SINE Alu 107 282 -30 1914 156 0 0 chr9 25757385 25757667 -116513777 + AluSx SINE Alu 1 282 -30 204 97 0 0 chr9 25757683 25757714 -116513730 + (TA)n Simple_repeat Simple_repeat 2 32 0 2977 273 34 34 chr9 25757764 25758990 -116512454 - L1M4c LINE L1 -4289 2443 1531 2165 180 36 10 chr9 25758990 25759407 -116512037 - MSTA LTR MaLR 0 428 1 2977 273 34 34 chr9 25759407 25760348 -116511096 - L1M4c LINE L1 -5201 1531 591 180 0 0 0 chr9 25760348 25760368 -116511076 + (TC)n Simple_repeat Simple_repeat 1 20 0 390 288 77 38 chr9 25760430 25760990 -116510454 - L1M4 LINE L1 -1432 4714 4133 781 315 55 41 chr9 25761003 25761346 -116510098 + L2 LINE L2 2963 3310 -3 22 35 0 0 chr9 25761532 25761561 -116509883 + AT_rich Low_complexity Low_complexity 1 29 0 808 305 53 40 chr9 25761724 25762098 -116509346 - L1ME3A LINE L1 -14 6156 5778 1763 166 3 3 chr9 25762580 25762870 -116508574 - AluSx SINE Alu -22 290 1 24 32 0 0 chr9 25763666 25763697 -116507747 + AT_rich Low_complexity Low_complexity 1 31 0 1414 160 19 0 chr9 25763723 25763991 -116507453 - L1MA4 LINE L1 -5 6295 6023 2034 115 19 16 chr9 25763998 25764310 -116507134 - AluSq SINE Alu 0 313 1 37 52 0 0 chr9 25764423 25764481 -116506963 + AT_rich Low_complexity Low_complexity 1 58 0 658 120 0 0 chr9 25764704 25764804 -116506640 - AluY SINE Alu -1 310 211 237 308 93 0 chr9 25764872 25764979 -116506465 + HAL1 LINE L1 23 139 -2368 7425 35 2 0 chr9 25765641 25767344 -116504100 - L1PA4 LINE L1 -4 6151 4445 478 298 48 43 chr9 25767451 25767659 -116503785 + MIR SINE MIR 52 260 -2 22 0 0 0 chr9 25768312 25768334 -116503110 + AT_rich Low_complexity Low_complexity 1 22 0 285 214 71 0 chr9 25769516 25769600 -116501844 - L1MC5 LINE L1 -36 7925 7836 2103 82 36 20 chr9 25769823 25770126 -116501318 + AluY SINE Alu 3 310 -1 1894 174 86 8 chr9 25770127 25770489 -116500955 - MER57A LTR ERV1 -13 390 1 2991 197 25 11 chr9 25770489 25771118 -116500326 + LTR48B LTR ERV1 7 644 0 1183 213 79 18 chr9 25771154 25771482 -116499962 - L1ME3A LINE L1 -168 6002 5655 47 82 0 0 chr9 25772068 25772178 -116499266 + AT_rich Low_complexity Low_complexity 1 110 0 287 317 19 19 chr9 25772428 25772532 -116498912 + MIR SINE MIR 47 150 -112 735 171 181 40 chr9 25772620 25772819 -116498625 - AluJo SINE Alu -3 309 83 435 282 28 80 chr9 25772971 25773184 -116498260 - MIR SINE MIR 0 262 61 25 0 0 0 chr9 25773457 25773482 -116497962 + AT_rich Low_complexity Low_complexity 1 25 0 418 211 202 0 chr9 25773959 25774068 -116497376 + FLAM_A SINE Alu 1 131 -2 2485 189 29 81 chr9 25774351 25774934 -116496510 + MLT2B3 LTR ERVL 2 554 0 261 240 194 23 chr9 25775940 25776069 -116495375 + MER5A DNA MER1_type 35 185 -4 1417 182 64 8 chr9 25776261 25776582 -116494862 + MLT2C2 LTR ERVL 3 332 -65 288 175 0 32 chr9 25776580 25776643 -116494801 - AluSp SINE Alu -170 133 73 * 634 94 31 10 chr9 25776646 25776742 -116494702 - AluJo SINE Alu -210 102 5 891 228 64 20 chr9 25777547 25777797 -116493647 + MIR SINE MIR 2 262 0 611 34 91 23 chr9 25778997 25779085 -116492359 - L1PA8 LINE L1 -5 6167 6074 405 39 0 0 chr9 25779194 25779245 -116492199 + MADE1 DNA Mariner 1 51 -29 690 296 27 17 chr9 25779746 25780047 -116491397 - L1M4 LINE L1 -2499 3647 3344 5524 45 9 0 chr9 25780162 25780845 -116490599 - L1PA5 LINE L1 -1412 4734 4046 7224 43 6 1 chr9 25780845 25782273 -116489171 + L1PA5 LINE L1 4708 6139 -15 987 195 0 0 chr9 25782401 25782570 -116488874 + FAM SINE Alu 1 169 -6 344 275 46 9 chr9 25782631 25782740 -116488704 + MER101B LTR ERV1 1 113 -457 1108 267 10 66 chr9 25782907 25783325 -116488119 + LTR51 LTR ERV1 222 830 -93 287 119 48 0 chr9 25783495 25783537 -116487907 + MER21B LTR ERV1 53 96 -767 1100 285 14 109 chr9 25783673 25784453 -116486991 + L1ME LINE L1 6 711 -5359 947 225 71 25 chr9 25784470 25784579 -116486865 + L1ME LINE L1 2102 2205 -3875 1817 164 0 37 chr9 25784579 25784903 -116486541 + AluJb SINE Alu 1 312 0 947 225 71 25 chr9 25784903 25785228 -116486216 + L1ME LINE L1 2205 2556 -3524 4392 118 52 116 chr9 25785228 25786725 -116484719 - pTR5 LTR ERV1 -1 1682 6 1579 246 102 3 chr9 25786729 25787295 -116484149 + L1ME LINE L1 4182 4803 -1277 696 255 60 23 chr9 25787343 25787559 -116483885 - MER58A DNA MER1_type 0 224 1 1461 163 130 4 chr9 25787625 25787902 -116483542 - MER2 DNA MER2_type -31 314 3 4645 96 140 6 chr9 25788027 25788755 -116482689 - LTR12 LTR ERV1 0 826 1 47327 85 3 7 chr9 25788755 25797137 -116474307 - HERV9 LTR ERV1 0 8399 55 4867 68 9 194 chr9 25797165 25798178 -116473266 - LTR12 LTR ERV1 0 826 1 1086 239 59 33 chr9 25798713 25799255 -116472189 + L1ME LINE L1 4802 5366 -730 1927 176 0 3 chr9 25799255 25799556 -116471888 - AluSx SINE Alu -11 301 2 1086 239 59 33 chr9 25799556 25799605 -116471839 + L1ME LINE L1 5366 5412 -684 32 0 0 0 chr9 25799618 25799650 -116471794 + AT_rich Low_complexity Low_complexity 1 32 0 2421 136 0 19 chr9 25799796 25800215 -116471229 - L1MA3 LINE L1 0 6305 5895 729 95 0 0 chr9 25800267 25800372 -116471072 + L1MA2 LINE L1 5770 5874 -430 240 285 90 21 chr9 25801531 25801675 -116469769 + L1ME LINE L1 5320 5473 -2335 596 184 6 78 chr9 25801735 25801914 -116469530 + L1MC4 LINE L1 7869 8034 -8 392 279 154 23 chr9 25802009 25802141 -116469303 + L1ME LINE L1 5466 5579 -542 276 39 39 20 chr9 25802141 25802192 -116469252 + (CATTT)n Simple_repeat Simple_repeat 4 55 0 392 279 154 23 chr9 25802192 25802370 -116469074 + L1ME LINE L1 5579 5824 -297 21 0 0 0 chr9 25802568 25802589 -116468855 + AT_rich Low_complexity Low_complexity 1 21 0 1912 94 11 34 chr9 25802590 25802856 -116468588 - AluSx SINE Alu -17 295 36 23 0 0 0 chr9 25803023 25803046 -116468398 + AT_rich Low_complexity Low_complexity 1 23 0 359 252 9 35 chr9 25803980 25804095 -116467349 - MER94 DNA DNA 0 134 23 638 157 27 68 chr9 25804226 25804373 -116467071 - FRAM SINE Alu -23 153 13 634 188 131 74 chr9 25804527 25804703 -116466741 - AluJb SINE Alu -38 274 89 26 64 0 0 chr9 25805403 25805450 -116465994 + AT_rich Low_complexity Low_complexity 1 47 0 36 23 0 0 chr9 25807077 25807120 -116464324 + AT_rich Low_complexity Low_complexity 1 43 0 11556 27 0 0 chr9 25807727 25809113 -116462331 - L1P LINE L1 -1999 4147 2762 3772 16 9 0 chr9 25809527 25809968 -116461476 + L1PA2 LINE L1 5711 6155 0 241 345 0 24 chr9 25811632 25811716 -116459728 - L3 LINE CR1 -37 1540 1459 2104 161 40 13 chr9 25812713 25813085 -116458359 - MER61D LTR ERV1 -6 495 114 7282 115 72 11 chr9 25813127 25813456 -116457988 - MER61D-int LTR ERV1 0 5217 4910 291 28 0 0 chr9 25813456 25813492 -116457952 + (CAA)n Simple_repeat Simple_repeat 2 37 0 7282 115 72 11 chr9 25813492 25814299 -116457145 - MER61D-int LTR ERV1 -307 4910 4011 10735 100 36 17 chr9 25814299 25814418 -116457026 - MER61D-int LTR ERV1 -1316 3901 3786 2241 118 0 7 chr9 25814418 25814724 -116456720 - AluSx SINE Alu -8 304 1 10735 100 36 17 chr9 25814724 25816273 -116455171 - MER61D-int LTR ERV1 -1431 3786 2201 734 152 62 7 chr9 25816253 25816398 -116455046 - MER61D-int LTR ERV1 -3338 4199 4047 * 3143 185 41 44 chr9 25816389 25817917 -116453527 - MER61D-int LTR ERV1 -3577 2006 183 269 254 53 35 chr9 25817947 25818061 -116453383 - MER61D-int LTR ERV1 -6475 521 406 539 204 44 29 chr9 25818078 25818215 -116453229 - MER61D-int LTR ERV1 -5077 140 2 2158 157 40 38 chr9 25818215 25818610 -116452834 - MER61D LTR ERV1 0 501 106 26 0 0 0 chr9 25818688 25818714 -116452730 + AT_rich Low_complexity Low_complexity 1 26 0 2244 122 0 0 chr9 25819011 25819314 -116452130 - AluSc SINE Alu -6 303 1 22 70 0 0 chr9 25819560 25819603 -116451841 + AT_rich Low_complexity Low_complexity 1 43 0 1982 155 0 0 chr9 25820064 25820368 -116451076 - AluSx SINE Alu -8 304 1 679 297 126 10 chr9 25820609 25820919 -116450525 - L2 LINE L2 0 3313 2968 264 279 59 44 chr9 25820937 25821073 -116450371 - MIR SINE MIR -50 212 75 409 303 59 26 chr9 25821106 25821258 -116450186 + MIR SINE MIR 74 230 -32 1549 175 104 0 chr9 25821285 25821593 -116449851 + MER58B DNA MER1_type 1 340 -1 186 118 0 0 chr9 25821643 25821677 -116449767 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 4811 129 9 11 chr9 25821677 25822460 -116448984 - L1MA5A LINE L1 -9 6288 5508 1332 177 5 0 chr9 25822915 25823130 -116448314 - AluJb SINE Alu -12 300 85 394 310 110 32 chr9 25823152 25823635 -116447809 - L1MC/D LINE L1 -2012 5796 5271 22 35 0 0 chr9 25824014 25824043 -116447401 + AT_rich Low_complexity Low_complexity 1 29 0 246 302 63 0 chr9 25824043 25824169 -116447275 - L1ME3A LINE L1 -13 6157 6024 271 312 0 11 chr9 25824280 25824373 -116447071 - L1MC/D LINE L1 -2053 4093 4002 2333 71 0 0 chr9 25825561 25825844 -116445600 - AluY SINE Alu -17 294 12 9699 123 41 8 chr9 25826001 25827518 -116443926 + Tigger1 DNA MER2_type 23 1589 -829 306 101 30 30 chr9 25828736 25828835 -116442609 + (TA)n Simple_repeat Simple_repeat 2 100 0 2375 159 9 16 chr9 25828933 25829372 -116442072 + Tigger1 DNA MER2_type 1577 2012 -406 434 236 137 47 chr9 25829396 25829629 -116441815 - L1MC/D LINE L1 -3093 3053 2800 530 304 108 30 chr9 25829635 25829997 -116441447 - L1MC4a LINE L1 -1960 5848 5459 1598 211 141 65 chr9 25830001 25830583 -116440861 + MLT1E2 LTR MaLR 1 626 0 2012 143 76 15 chr9 25831102 25831445 -116439999 + THE1B LTR MaLR 1 364 0 284 67 67 0 chr9 25831632 25831674 -116439770 - MLT2B2 LTR ERVL 0 515 471 1538 186 48 18 chr9 25831674 25831754 -116439690 - Tigger2 DNA MER2_type 0 2718 2642 2126 130 0 0 chr9 25831754 25832053 -116439391 + AluY SINE Alu 1 299 -12 1538 186 48 18 chr9 25832053 25832306 -116439138 - Tigger2 DNA MER2_type -76 2642 2375 28452 125 16 67 chr9 25832449 25833418 -116438026 - L1P LINE L1 -1075 5071 4055 5312 167 27 30 chr9 25833418 25834492 -116436952 + MER11C LTR ERVK 1 1071 0 28452 125 16 67 chr9 25834492 25838862 -116432582 - L1P LINE L1 -2091 4055 1 2208 119 0 7 chr9 25838882 25839192 -116432252 - AluSg SINE Alu -2 308 1 243 220 55 18 chr9 25839196 25839305 -116432139 - L1P LINE L1 -734 5420 5308 1973 168 35 0 chr9 25839325 25839699 -116431745 - L1PB4 LINE L1 0 6156 5770 1610 174 4 14 chr9 25839750 25840026 -116431418 - AluJo SINE Alu -39 273 1 562 244 42 115 chr9 25840217 25840766 -116430678 - L1MC4a LINE L1 -1156 4990 4482 1511 205 28 9 chr9 25840784 25841111 -116430333 - L1M4 LINE L1 -460 6216 5884 491 162 31 0 chr9 25841114 25841310 -116430134 + (TA)n Simple_repeat Simple_repeat 1 202 0 1128 201 7 44 chr9 25841310 25841603 -116429841 - L1M4 LINE L1 -904 5740 5459 3990 246 42 30 chr9 25841619 25841636 -116429808 - L1M4 LINE L1 -5305 1237 1222 21 0 0 0 chr9 25841636 25841657 -116429787 + AT_rich Low_complexity Low_complexity 1 21 0 3990 246 42 30 chr9 25841657 25842044 -116429400 - L1M4 LINE L1 -5320 1222 841 228 35 0 0 chr9 25842044 25842073 -116429371 + (TG)n Simple_repeat Simple_repeat 2 30 0 3990 246 42 30 chr9 25842073 25842858 -116428586 - L1M4 LINE L1 -5701 841 6 1206 137 0 0 chr9 25843130 25843298 -116428146 + AluSg SINE Alu 4 171 -139 361 283 28 0 chr9 25843304 25843410 -116428034 + MIR SINE MIR 104 212 -50 226 323 85 30 chr9 25844813 25844998 -116426446 - MIR SINE MIR -50 212 18 2152 133 7 0 chr9 25845010 25845319 -116426125 - AluSx SINE Alu -1 311 1 780 261 10 15 chr9 25845799 25845994 -116425450 + LTR33 LTR ERVL 1 194 -327 454 176 157 10 chr9 25846147 25846249 -116425195 + LTR33 LTR ERVL 405 521 0 2279 70 0 3 chr9 25846527 25846845 -116424599 + AluY SINE Alu 1 317 0 3686 209 38 17 chr9 25847267 25848156 -116423288 + L1ME1 LINE L1 5254 6161 -5 430 35 0 0 chr9 25848819 25848877 -116422567 + L1PA2 LINE L1 6098 6155 0 223 304 180 3 chr9 25849497 25849651 -116421793 - MIR SINE MIR -18 244 49 1980 153 3 3 chr9 25850278 25850586 -116420858 - AluJb SINE Alu 0 312 5 207 0 0 0 chr9 25851017 25851040 -116420404 + (TTCA)n Simple_repeat Simple_repeat 3 25 0 458 297 43 7 chr9 25853802 25853940 -116417504 + MIR SINE MIR 20 162 -100 21 0 0 0 chr9 25854667 25854688 -116416756 + AT_rich Low_complexity Low_complexity 1 21 0 4592 146 27 38 chr9 25856286 25857643 -116413801 - L1M1 LINE L1 -653 7068 5732 * 37738 90 10 9 chr9 25857633 25863764 -116407680 - L1PA6 LINE L1 -9 6145 11 19631 171 43 8 chr9 25863767 25867657 -116403787 - L1M1 LINE L1 -1813 5752 2000 369 0 0 0 chr9 25867657 25867698 -116403746 + (TC)n Simple_repeat Simple_repeat 2 42 0 19631 171 43 8 chr9 25867698 25869266 -116402178 - L1M1 LINE L1 -5565 2000 94 182 88 0 29 chr9 25869266 25869300 -116402144 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 19631 171 43 8 chr9 25869300 25869385 -116402059 - L1M1 LINE L1 -7471 94 13 4806 170 37 34 chr9 25869388 25869851 -116401593 + L1MA4 LINE L1 4843 5303 -997 192 40 0 0 chr9 25869851 25869876 -116401568 + (TA)n Simple_repeat Simple_repeat 2 26 0 216 0 0 0 chr9 25869878 25869902 -116401542 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2068 79 0 4 chr9 25869905 25870158 -116401286 - AluSc SINE Alu -44 265 14 4806 170 37 34 chr9 25870158 25871120 -116400324 + L1MA4 LINE L1 5304 6300 0 560 226 95 0 chr9 25871134 25871271 -116400173 - MER3 DNA MER1_type -59 150 1 2594 102 3 6 chr9 25871841 25872204 -116399240 + THE1B LTR MaLR 1 362 -2 2994 108 11 4 chr9 25872451 25872903 -116398541 + L1MA1 LINE L1 5848 6302 0 3541 169 8 8 chr9 25872921 25873169 -116398275 - L1 LINE L1 -1286 4860 4613 2242 114 3 0 chr9 25873169 25873476 -116397968 - AluSp SINE Alu -5 308 1 3541 169 8 8 chr9 25873476 25873953 -116397491 - L1 LINE L1 -1532 4614 4135 389 169 0 0 chr9 25873954 25874025 -116397419 + MER3 DNA MER1_type 139 209 0 294 222 0 0 chr9 25873978 25874032 -116397412 - MER3 DNA MER1_type -115 94 41 * 21 89 0 0 chr9 25874522 25874578 -116396866 + AT_rich Low_complexity Low_complexity 1 56 0 396 0 0 0 chr9 25876017 25876061 -116395383 + (TA)n Simple_repeat Simple_repeat 2 45 0 21 0 0 0 chr9 25876062 25876083 -116395361 + AT_rich Low_complexity Low_complexity 1 21 0 243 0 0 0 chr9 25877381 25877408 -116394036 + (CA)n Simple_repeat Simple_repeat 1 27 0 871 176 90 5 chr9 25877567 25877755 -116393689 - MER3 DNA MER1_type 0 209 6 34 24 0 0 chr9 25877792 25877833 -116393611 + AT_rich Low_complexity Low_complexity 1 41 0 1550 185 3 14 chr9 25878073 25878391 -116393053 + AluJb SINE Alu 1 315 0 1627 105 31 0 chr9 25879654 25879911 -116391533 - L1MA1 LINE L1 0 6302 6038 242 353 13 51 chr9 25880535 25880691 -116390753 + L3 LINE CR1 636 785 -792 1360 196 50 13 chr9 25880932 25881249 -116390195 - MER45B DNA AcHobo 0 1040 712 1989 79 0 4 chr9 25881249 25881515 -116389929 + THE1-int LTR MaLR 1 265 -1315 678 262 128 25 chr9 25881920 25882279 -116389165 - L1ME4a LINE L1 -211 5910 5515 1266 181 41 0 chr9 25882680 25882901 -116388543 + AluJb SINE Alu 83 312 0 25 51 0 0 chr9 25883054 25883093 -116388351 + AT_rich Low_complexity Low_complexity 1 39 0 216 97 0 0 chr9 25883866 25883897 -116387547 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 23 0 0 0 chr9 25884892 25884915 -116386529 + AT_rich Low_complexity Low_complexity 1 23 0 6456 257 82 35 chr9 25886218 25888473 -116382971 - L1ME1 LINE L1 -8 6953 4805 2190 68 6 71 chr9 25888473 25888795 -116382649 + AluY SINE Alu 1 301 -10 6456 257 82 35 chr9 25888795 25888869 -116382575 - L1ME1 LINE L1 -2156 4805 4736 1978 138 7 3 chr9 25888869 25889174 -116382270 + AluSx SINE Alu 7 312 0 6456 257 82 35 chr9 25889174 25890153 -116381291 - L1ME1 LINE L1 -2225 4736 3804 8839 79 3 0 chr9 25890153 25892113 -116379331 - L1PA6 LINE L1 0 6154 4183 6456 257 82 35 chr9 25892113 25893430 -116378014 - L1ME1 LINE L1 -3157 3804 2550 310 0 67 0 chr9 25893430 25893475 -116377969 + (TATAA)n Simple_repeat Simple_repeat 3 50 0 6456 257 82 35 chr9 25893475 25894002 -116377442 - L1ME1 LINE L1 -4411 2550 2049 2219 108 10 0 chr9 25894002 25894308 -116377136 - AluSp SINE Alu -4 309 1 6456 257 82 35 chr9 25894308 25894817 -116376627 - L1ME1 LINE L1 -4912 2049 821 1789 251 19 2 chr9 25894840 25895266 -116376178 - MLT1C LTR MaLR -1 466 34 1514 174 79 82 chr9 25895279 25895670 -116375774 - MLT1B LTR MaLR 0 390 1 409 303 64 21 chr9 25896378 25896612 -116374832 - L1ME LINE L1 -302 5819 5576 195 402 18 9 chr9 25896801 25896913 -116374531 + MIR3 SINE MIR 47 159 -49 857 339 38 13 chr9 25898288 25898660 -116372784 + LTR16A LTR ERVL 20 400 -50 759 293 31 27 chr9 25898696 25898955 -116372489 - MIR SINE MIR 0 262 3 24 32 0 0 chr9 25899113 25899144 -116372300 + AT_rich Low_complexity Low_complexity 1 31 0 31 26 0 0 chr9 25899614 25899652 -116371792 + AT_rich Low_complexity Low_complexity 1 38 0 234 315 71 39 chr9 25899657 25899784 -116371660 - MIR SINE MIR -40 222 92 2258 128 27 3 chr9 25899815 25900181 -116371263 + THE1C LTR MaLR 1 375 0 359 283 196 38 chr9 25900728 25900912 -116370532 + MIR SINE MIR 2 214 -48 503 359 21 24 chr9 25901003 25901332 -116370112 - L2 LINE L2 -703 2611 2284 23 0 0 0 chr9 25901475 25901498 -116369946 + AT_rich Low_complexity Low_complexity 1 23 0 383 297 34 0 chr9 25901624 25901742 -116369702 - L2 LINE L2 -5 3308 3187 1326 267 84 41 chr9 25901751 25902437 -116369007 + HAL1b LINE L1 267 982 -366 1911 211 44 12 chr9 26002442 26002998 -116268446 + L1M2c LINE L1 1152 1698 -4513 * 2540 143 27 40 chr9 26002985 26003042 -116268402 - L1MA7 LINE L1 -457 5834 5778 207 0 0 0 chr9 26003042 26003065 -116268379 + (TA)n Simple_repeat Simple_repeat 1 23 0 2540 143 27 40 chr9 26003065 26003488 -116267956 - L1MA7 LINE L1 -513 5778 5360 1089 175 21 3 chr9 26003491 26003824 -116267620 + L1MA7 LINE L1 5836 6280 -11 2944 253 50 33 chr9 26003849 26005510 -116265934 + L1M4c LINE L1 1459 3160 -3222 56 29 0 0 chr9 26005512 26005582 -116265862 + AT_rich Low_complexity Low_complexity 1 70 0 403 341 89 11 chr9 26005636 26005815 -116265629 + MIR SINE MIR 13 205 -57 249 163 0 0 chr9 26006040 26006089 -116265355 + GA-rich Low_complexity Low_complexity 2 50 0 196 313 133 8 chr9 26006262 26006390 -116265054 + L2 LINE L2 2916 3059 -254 2235 112 3 0 chr9 26006433 26006738 -116264706 - AluSx SINE Alu -6 306 1 711 133 13 164 chr9 26006754 26006784 -116264660 + L1MA9 LINE L1 6121 6154 -158 297 0 0 0 chr9 26006784 26006817 -116264627 + (CA)n Simple_repeat Simple_repeat 2 34 0 711 133 13 164 chr9 26006817 26007012 -116264432 + L1MA9 LINE L1 6154 6312 0 17104 31 2 1 chr9 26007783 26010614 -116260830 - L1PA3 LINE L1 -1 6154 3321 456 289 173 6 chr9 26012637 26012793 -116258651 - MIR SINE MIR -75 187 6 2006 256 81 39 chr9 26013369 26014095 -116257349 - L1ME3A LINE L1 -13 6157 5358 2078 142 0 0 chr9 26014095 26014391 -116257053 - AluSx SINE Alu -16 296 1 2006 256 81 39 chr9 26014391 26014770 -116256674 - L1ME3A LINE L1 -812 5358 4997 192 40 0 0 chr9 26016208 26016233 -116255211 + (CA)n Simple_repeat Simple_repeat 2 26 0 219 114 0 0 chr9 26016695 26016730 -116254714 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 1371 77 0 57 chr9 26016730 26016823 -116254621 - L1PA8 LINE L1 -24 6148 6051 2406 98 0 0 chr9 26016823 26017130 -116254314 - AluSq SINE Alu -6 307 1 1371 77 0 57 chr9 26017130 26017245 -116254199 - L1PA8 LINE L1 -121 6051 5952 27 0 0 0 chr9 26017515 26017542 -116253902 + AT_rich Low_complexity Low_complexity 1 27 0 342 338 74 17 chr9 26017697 26017928 -116253516 + L1M4 LINE L1 4522 4765 -1381 206 286 57 29 chr9 26018204 26018274 -116253170 + L2 LINE L2 3242 3313 0 1467 186 259 5 chr9 26018432 26018475 -116252969 - MLT2B1 LTR ERVL 0 520 489 303 28 0 0 chr9 26018475 26018511 -116252933 + (TG)n Simple_repeat Simple_repeat 1 36 0 1467 186 259 5 chr9 26018511 26018880 -116252564 - MLT2B1 LTR ERVL -31 489 3 204 318 23 34 chr9 26019341 26019429 -116252015 - L2 LINE L2 0 3313 3227 4139 107 40 54 chr9 26019541 26019707 -116251737 - LTR8 LTR ERV1 0 691 524 207 0 0 0 chr9 26019707 26019730 -116251714 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 1950 112 11 4 chr9 26019735 26020013 -116251431 - AluSx SINE Alu -30 282 3 4139 107 40 54 chr9 26020013 26020541 -116250903 - LTR8 LTR ERV1 -171 520 1 458 332 43 5 chr9 26020583 26020770 -116250674 - L2 LINE L2 -516 2798 2605 292 244 103 0 chr9 26020800 26020878 -116250566 - MER69A DNA AcHobo -31 146 61 252 333 84 40 chr9 26020934 26021207 -116250237 - L2 LINE L2 -721 2593 2309 1677 190 25 19 chr9 26023402 26023538 -116247906 + MLT1A1 LTR MaLR 1 135 -230 6767 49 1 0 chr9 26023538 26024380 -116247064 + L1PA4 LINE L1 5310 6152 -3 1677 190 25 19 chr9 26024380 26024606 -116246838 + MLT1A1 LTR MaLR 135 365 0 428 209 163 8 chr9 26024758 26024887 -116246557 - L1ME LINE L1 -437 5684 5536 585 302 106 39 chr9 26025005 26025412 -116246032 - L1ME LINE L1 -748 5398 4965 1037 287 98 25 chr9 26025412 26025809 -116245635 + MLT1J2 LTR MaLR 1 426 -24 223 338 133 13 chr9 26026077 26026228 -116245216 + L2 LINE L2 2697 2865 -449 594 309 30 0 chr9 26026824 26027025 -116244419 - LTR33 LTR ERVL 0 521 315 292 333 44 18 chr9 26027094 26027208 -116244236 - LTR33A LTR ERVL -334 189 73 239 192 19 0 chr9 26028338 26028390 -116243054 + (CAT)n Simple_repeat Simple_repeat 1 53 0 320 276 82 0 chr9 26028410 26028508 -116242936 - MIR SINE MIR -26 236 131 200 352 64 32 chr9 26028543 26028668 -116242776 + L2 LINE L2 3141 3269 -3 2724 217 22 11 chr9 26030084 26030099 -116241345 - L1P LINE L1 -2451 3695 3682 285 29 0 0 chr9 26030099 26030133 -116241311 + (TTG)n Simple_repeat Simple_repeat 3 36 0 2724 217 22 11 chr9 26030133 26030828 -116240616 - L1P LINE L1 -2464 3682 2977 * 5863 147 12 2 chr9 26030827 26031899 -116239545 + L1PA15 LINE L1 5072 6164 -1 216 0 0 0 chr9 26032567 26032591 -116238853 + (T)n Simple_repeat Simple_repeat 1 24 0 2254 119 3 0 chr9 26033081 26033391 -116238053 + AluSq SINE Alu 1 311 -2 347 227 91 11 chr9 26033396 26033484 -116237960 + L2 LINE L2 3169 3263 -9 210 91 0 0 chr9 26033487 26033520 -116237924 + (TGAA)n Simple_repeat Simple_repeat 4 36 0 353 251 33 49 chr9 26035080 26035263 -116236181 + L1ME4a LINE L1 5727 5906 -215 249 33 0 0 chr9 26035603 26035633 -116235811 + (TG)n Simple_repeat Simple_repeat 2 31 0 359 344 44 15 chr9 26036098 26036305 -116235139 + MIR SINE MIR 45 256 -6 647 119 50 0 chr9 26036422 26036523 -116234921 + MLT1B LTR MaLR 1 106 -284 640 170 9 0 chr9 26036527 26036639 -116234805 + AluSq/x SINE Alu 1 113 -200 4123 115 95 101 chr9 26036639 26038052 -116233392 + pTR5 LTR ERV1 66 2438 0 577 239 90 0 chr9 26038077 26038250 -116233194 + FRAM SINE Alu 1 50 0 1166 198 48 58 chr9 26038250 26038543 -116232901 + MLT1B LTR MaLR 101 390 0 225 353 57 0 chr9 26039482 26039604 -116231840 + MIR3 SINE MIR 75 203 -5 250 329 37 0 chr9 26039765 26039847 -116231597 + L2 LINE L2 3228 3312 -1 363 224 216 0 chr9 26040163 26040279 -116231165 + L2 LINE L2 3173 3313 0 200 242 53 42 chr9 26040968 26041063 -116230381 + L2 LINE L2 2170 2265 -1049 252 258 0 0 chr9 26042822 26042884 -116228560 + (CAATT)n Simple_repeat Simple_repeat 1 62 0 287 352 22 0 chr9 26042884 26042975 -116228469 - L2 LINE L2 -8 3264 3172 2623 123 6 105 chr9 26043115 26043612 -116227832 - LTR32 LTR ERVL -9 462 15 522 234 48 110 chr9 26044601 26044665 -116226779 + MIR SINE MIR 49 115 -147 2427 77 3 0 chr9 26044665 26044975 -116226469 + AluY SINE Alu 1 311 0 522 234 48 110 chr9 26044975 26045137 -116226307 + MIR SINE MIR 115 261 -1 314 202 141 20 chr9 26045873 26045972 -116225472 - MER103 DNA DNA -2 164 54 1607 195 13 16 chr9 26045986 26046289 -116225155 - AluJb SINE Alu -10 302 1 21 36 0 0 chr9 26048702 26048730 -116222714 + AT_rich Low_complexity Low_complexity 1 28 0 51 42 0 0 chr9 26049777 26049849 -116221595 + AT_rich Low_complexity Low_complexity 1 72 0 7332 227 67 12 chr9 26050569 26052388 -116219056 - L1MC/D LINE L1 -743 5403 3457 1931 132 0 21 chr9 26052388 26052770 -116218674 - AluSq SINE Alu 0 376 1 7332 227 67 12 chr9 26052770 26053262 -116218182 - L1MC/D LINE L1 -2689 3457 2993 1254 197 7 62 chr9 26053271 26053575 -116217869 + AluJo SINE Alu 11 297 -15 1284 258 15 36 chr9 26053577 26054046 -116217398 - L1MC/D LINE L1 -3144 3002 2544 218 359 63 6 chr9 26054065 26054224 -116217220 + L3 LINE CR1 685 852 -725 23 33 0 0 chr9 26055938 26055968 -116215476 + AT_rich Low_complexity Low_complexity 1 30 0 348 292 62 45 chr9 26057510 26057753 -116213691 + L1MEd LINE L1 830 1076 -5043 783 136 54 27 chr9 26057769 26057916 -116213528 - MLT1B LTR MaLR -239 151 1 289 360 18 12 chr9 26057932 26058134 -116213310 + L1ME LINE L1 5491 5700 -462 1625 172 7 24 chr9 26058271 26058562 -116212882 + AluJo SINE Alu 6 291 -21 1470 204 92 67 chr9 26058711 26059202 -116212242 + MLT1D LTR MaLR 1 503 -2 21 0 0 0 chr9 26059535 26059556 -116211888 + AT_rich Low_complexity Low_complexity 1 21 0 397 202 17 34 chr9 26060471 26060649 -116210795 + CT-rich Low_complexity Low_complexity 4 178 0 312 27 0 0 chr9 26061494 26061531 -116209913 + (CA)n Simple_repeat Simple_repeat 1 37 0 1655 172 4 4 chr9 26061537 26061810 -116209634 - AluJo SINE Alu -31 281 9 35 54 0 0 chr9 26062292 26062348 -116209096 + AT_rich Low_complexity Low_complexity 1 56 0 1579 276 96 29 chr9 26062353 26063069 -116208375 - L1ME3 LINE L1 -2 6160 5397 1665 134 48 101 chr9 26063079 26063475 -116207969 - THE1C LTR MaLR 0 375 1 1874 293 106 18 chr9 26063512 26063699 -116207745 - L1ME3 LINE L1 -814 5332 5163 216 0 0 0 chr9 26063699 26063723 -116207721 + (TA)n Simple_repeat Simple_repeat 2 25 0 1878 143 4 0 chr9 26063723 26064002 -116207442 - AluSx SINE Alu -27 285 6 1874 293 106 18 chr9 26064002 26065464 -116205980 - L1ME3 LINE L1 -982 5164 3494 2085 231 79 63 chr9 26065470 26066252 -116205192 - L1ME1 LINE L1 -5 6230 5436 2784 255 86 39 chr9 26066321 26067452 -116203992 - L1ME1 LINE L1 -5136 1260 77 1891 137 32 48 chr9 26067453 26067832 -116203612 + THE1C LTR MaLR 1 373 -2 28 29 0 0 chr9 26067894 26067929 -116203515 + AT_rich Low_complexity Low_complexity 1 35 0 11377 169 43 20 chr9 26067929 26070575 -116200869 - L1MA8 LINE L1 -6 6285 3558 2068 127 0 0 chr9 26070575 26070858 -116200586 - AluSx SINE Alu -27 285 3 11377 169 43 20 chr9 26070858 26071581 -116199863 - L1MA8 LINE L1 -2733 3558 2853 274 235 83 30 chr9 26071591 26071723 -116199721 - L1ME3 LINE L1 -2669 3477 3339 1844 199 25 0 chr9 26072033 26072389 -116199055 - MLT1A1 LTR MaLR 0 365 1 191 365 96 10 chr9 26072501 26072605 -116198839 + L2 LINE L2 3198 3310 -3 390 21 0 0 chr9 26073636 26073683 -116197761 + (TG)n Simple_repeat Simple_repeat 1 47 0 244 321 37 9 chr9 26074116 26074225 -116197219 - MIR3 SINE MIR -13 195 84 15173 32 0 0 chr9 26074226 26076049 -116195395 - L1P LINE L1 -892 5254 3432 4500 32 2 0 chr9 26076049 26076621 -116194823 + L1PA3 LINE L1 5617 6192 0 294 253 25 13 chr9 26076877 26076956 -116194488 - L2 LINE L2 -4 3309 3230 389 309 93 34 chr9 26076976 26077180 -116194264 + MIR SINE MIR 40 255 -7 11851 174 20 14 chr9 26077785 26078790 -116192654 - L1PA13 LINE L1 -1 6162 5165 2197 116 0 0 chr9 26078790 26079084 -116192360 - AluSc SINE Alu -15 294 1 11851 174 20 14 chr9 26079084 26081230 -116190214 - L1PA13 LINE L1 -998 5165 2986 2074 152 33 25 chr9 26081231 26081592 -116189852 - THE1B LTR MaLR 0 364 1 9887 116 10 30 chr9 26081592 26083129 -116188315 - THE1B-int LTR MaLR 0 1580 1 640 158 0 0 chr9 26083129 26083243 -116188201 - L1PA13 LINE L1 -3157 2989 2876 357 288 92 32 chr9 26083664 26084129 -116187315 - L1M4 LINE L1 -751 5395 4903 279 327 54 25 chr9 26085026 26085304 -116186140 + L1ME4a LINE L1 5607 5892 -229 237 179 73 98 chr9 26085344 26085467 -116185977 + L1ME4a LINE L1 5991 6110 -11 816 296 28 33 chr9 26085537 26085899 -116185545 - L1ME3 LINE L1 0 6162 5803 493 160 4 153 chr9 26085923 26086081 -116185363 - L1ME3 LINE L1 -587 5579 5457 419 298 60 22 chr9 26086176 26086495 -116184949 - L1ME LINE L1 -5064 1006 676 330 285 83 43 chr9 26087191 26087542 -116183902 - L1MEc LINE L1 -3825 2390 2066 1857 203 46 28 chr9 26087694 26088153 -116183291 - MLT1C LTR MaLR 0 467 1 248 274 80 28 chr9 26088315 26088527 -116182917 - L1MEc LINE L1 -4606 1609 1387 7098 47 9 1 chr9 26088534 26089713 -116181731 + L1PA5 LINE L1 4962 6147 -7 204 40 0 0 chr9 26089794 26089819 -116181625 + (TATG)n Simple_repeat Simple_repeat 2 26 0 1122 258 59 94 chr9 26089961 26090437 -116181007 + LTR40a LTR ERVL 2 517 -2 2161 115 3 0 chr9 26090453 26090749 -116180695 + AluSx SINE Alu 1 297 -15 823 215 84 34 chr9 26090870 26091228 -116180216 - L1MEc LINE L1 -5063 1333 958 1279 194 169 3 chr9 26091232 26091546 -116179898 + MER47A DNA MER2_type 1 366 0 967 283 36 26 chr9 26091567 26091988 -116179456 - L1MEc LINE L1 -5462 934 510 4531 186 37 14 chr9 26092532 26093489 -116177955 - L1MC1 LINE L1 -5 6328 5350 950 142 59 50 chr9 26093501 26093720 -116177724 - L1MCa LINE L1 -4432 1994 1774 546 192 15 39 chr9 26093743 26093873 -116177571 - L1MB3 LINE L1 -9 6174 6048 1121 239 152 16 chr9 26094155 26094477 -116176967 - MSTD LTR MaLR -30 366 1 204 306 143 34 chr9 26096218 26096427 -116175017 - L2 LINE L2 -166 3147 2916 265 331 118 24 chr9 26096709 26096878 -116174566 - MIR SINE MIR -50 212 28 4839 193 23 36 chr9 26097116 26099033 -116172411 - L1MA10 LINE L1 -41 6529 4643 21 36 0 0 chr9 26099045 26099073 -116172371 + AT_rich Low_complexity Low_complexity 1 28 0 6041 148 28 21 chr9 26099073 26099653 -116171791 - L1MA3 LINE L1 0 7724 7149 2437 97 43 6 chr9 26099653 26100003 -116171441 + THE1B LTR MaLR 1 363 -1 6041 148 28 21 chr9 26100003 26100493 -116170951 - L1MA3 LINE L1 -575 7149 6654 2331 93 3 10 chr9 26100493 26100806 -116170638 - AluY SINE Alu 0 311 1 6041 148 28 21 chr9 26100806 26101126 -116170318 - L1MA3 LINE L1 -1070 6654 6338 794 140 20 27 chr9 26101155 26101305 -116170139 - L1MA3 LINE L1 -4160 3405 3257 3884 183 25 18 chr9 26101306 26102054 -116169390 - L1MA10 LINE L1 -1752 4630 3874 3085 86 58 0 chr9 26102054 26102482 -116168962 - MLT2A2 LTR ERVL 0 453 1 3884 183 25 18 chr9 26102482 26102584 -116168860 - L1MA10 LINE L1 -2508 3874 3774 1088 268 56 24 chr9 26102583 26103274 -116168170 - L1MA10 LINE L1 -3613 2769 2044 * 2116 300 89 30 chr9 26103369 26103994 -116167450 - L1MA10 LINE L1 -5210 1103 516 2226 145 11 16 chr9 26103994 26104360 -116167084 + THE1B LTR MaLR 1 364 0 11287 98 13 5 chr9 26104360 26105922 -116165522 + THE1B-int LTR MaLR 1 1576 -4 1999 166 28 22 chr9 26105926 26106288 -116165156 + THE1B LTR MaLR 1 364 0 2116 300 89 30 chr9 26106288 26106535 -116164909 - L1MA10 LINE L1 -5799 514 173 7618 190 21 42 chr9 26106545 26108268 -116163176 - L1MCa LINE L1 -4736 1690 5 1306 303 106 19 chr9 26108271 26108894 -116162550 - HAL1 LINE L1 -1828 679 3 297 261 0 0 chr9 26109179 26109248 -116162196 - L2 LINE L2 -1 3312 3244 29 0 0 0 chr9 26109825 26109854 -116161590 + AT_rich Low_complexity Low_complexity 1 29 0 435 256 31 3 chr9 26109952 26110061 -116161383 - MLT1J2 LTR MaLR -280 199 70 24 53 0 0 chr9 26110352 26110390 -116161054 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr9 26110985 26111006 -116160438 + AT_rich Low_complexity Low_complexity 1 21 0 267 314 95 95 chr9 26111472 26111714 -116159730 + MLT1K LTR MaLR 118 359 -229 1175 75 6 0 chr9 26111745 26111906 -116159538 + L1PB2 LINE L1 5987 6148 -3 195 235 0 0 chr9 26112140 26112238 -116159206 + (TA)n Simple_repeat Simple_repeat 1 98 0 196 349 16 0 chr9 26112276 26112339 -116159105 + L2 LINE L2 3174 3237 -35 4378 201 25 46 chr9 26112344 26113264 -116158180 + MER54A LTR ERVL 1 901 0 650 302 72 4 chr9 26113483 26113724 -116157720 + MIR SINE MIR 6 262 0 348 269 163 0 chr9 26114515 26114656 -116156788 + MIR SINE MIR 79 242 -20 276 154 0 0 chr9 26115320 26115372 -116156072 + T-rich Low_complexity Low_complexity 1 52 0 5617 22 3 2 chr9 26115420 26116262 -116155182 - L1PA4 LINE L1 -598 5557 4715 4708 36 5 12 chr9 26116262 26116829 -116154615 + L1PA4 LINE L1 5571 6153 -2 190 337 0 47 chr9 26116977 26117063 -116154381 + MIR SINE MIR 30 111 -97 981 180 6 11 chr9 26117083 26117261 -116154183 + MER5B DNA MER1_type 1 177 -1 255 327 56 0 chr9 26119238 26119345 -116152099 + L2 LINE L2 3147 3259 -13 650 193 117 53 chr9 26119905 26120265 -116151179 + MLT1G LTR MaLR 109 590 0 528 242 52 7 chr9 26120681 26120834 -116150610 - MER103 DNA DNA 0 166 7 21 36 0 0 chr9 26121283 26121311 -116150133 + AT_rich Low_complexity Low_complexity 1 28 0 268 195 381 0 chr9 26122126 26122244 -116149200 + MER103 DNA DNA 2 164 -2 192 301 135 19 chr9 26122487 26122615 -116148829 - MIR SINE MIR -67 141 29 402 80 0 40 chr9 26123121 26123196 -116148248 + (TTCTC)n Simple_repeat Simple_repeat 4 75 0 287 286 26 0 chr9 26124142 26124219 -116147225 + L2 LINE L2 3232 3310 -3 210 339 45 27 chr9 26124242 26124354 -116147090 - MIR SINE MIR -58 150 37 2333 66 0 3 chr9 26124861 26125163 -116146281 - AluY SINE Alu -10 301 1 25 0 0 0 chr9 26125351 26125376 -116146068 + AT_rich Low_complexity Low_complexity 1 25 0 42037 39 26 2 chr9 26126363 26132405 -116139039 - L1PA3 LINE L1 0 6155 7 180 77 0 0 chr9 26133019 26133045 -116138399 + (TGAA)n Simple_repeat Simple_repeat 4 29 0 1442 251 94 7 chr9 26133582 26134040 -116137404 + L2 LINE L2 2077 2574 -740 613 191 53 15 chr9 26134040 26134171 -116137273 - MER63 DNA MER1_type -286 776 15 662 246 56 6 chr9 26134694 26134873 -116136571 - MER5A DNA MER1_type 0 189 2 584 281 7 14 chr9 26135408 26135547 -116135897 + MER5A DNA MER1_type 2 139 -50 23 33 0 0 chr9 26135827 26135857 -116135587 + AT_rich Low_complexity Low_complexity 1 30 0 436 294 138 25 chr9 26136242 26136332 -116135112 - MER5B DNA MER1_type 0 178 100 1816 176 48 28 chr9 26136332 26136690 -116134754 - MLT1A1 LTR MaLR 0 365 1 436 294 138 25 chr9 26136690 26136759 -116134685 - MER5B DNA MER1_type -78 100 1 23 0 0 0 chr9 26136878 26136901 -116134543 + AT_rich Low_complexity Low_complexity 1 23 0 196 289 0 19 chr9 26137692 26137744 -116133700 - MIR SINE MIR -134 74 24 2744 87 0 0 chr9 26138455 26138824 -116132620 - L1PA11 LINE L1 -304 5864 5496 1759 131 39 26 chr9 26138826 26139131 -116132313 + L1PA11 LINE L1 5864 6172 -2 183 129 0 0 chr9 26139515 26139546 -116131898 + (TATATG)n Simple_repeat Simple_repeat 6 36 0 268 353 33 20 chr9 26139884 26140034 -116131410 - MIR3 SINE MIR -6 202 51 7464 94 5 20 chr9 26140598 26141682 -116129762 - MER11C LTR ERVK -4 1067 1 438 198 30 10 chr9 26141694 26141795 -116129649 - MER5A DNA MER1_type -77 112 10 599 279 65 5 chr9 26143224 26143439 -116128005 - L2 LINE L2 -259 3054 2827 627 297 115 63 chr9 26143474 26144018 -116127426 + L2 LINE L2 2714 3298 -15 190 184 29 39 chr9 26144047 26144150 -116127294 + CT-rich Low_complexity Low_complexity 4 105 0 27 0 0 0 chr9 26146290 26146317 -116125127 + AT_rich Low_complexity Low_complexity 1 27 0 388 282 125 68 chr9 26146884 26147598 -116123846 - L2 LINE L2 0 3313 2458 231 240 27 13 chr9 26147971 26148046 -116123398 - MIR SINE MIR -4 258 183 997 297 101 23 chr9 26148395 26148918 -116122526 - L2 LINE L2 0 3313 2753 1699 146 114 7 chr9 26149253 26149534 -116121910 + AluSx SINE Alu 1 311 -1 1932 187 25 42 chr9 26149796 26150271 -116121173 + MLT1C LTR MaLR 1 467 0 195 323 75 21 chr9 26150779 26150872 -116120572 - MIR SINE MIR -66 196 99 185 206 96 68 chr9 26150932 26151005 -116120439 - L2 LINE L2 -300 2972 2898 195 114 0 0 chr9 26151136 26151171 -116120273 + (TATG)n Simple_repeat Simple_repeat 4 38 0 225 0 0 0 chr9 26151394 26151419 -116120025 + (TG)n Simple_repeat Simple_repeat 2 26 0 1934 146 27 27 chr9 26151715 26152086 -116119358 - THE1C LTR MaLR -2 373 3 29 47 0 0 chr9 26152254 26152297 -116119147 + AT_rich Low_complexity Low_complexity 1 43 0 849 123 27 0 chr9 26152297 26152443 -116119001 - L1MA9 LINE L1 0 6312 6163 1056 103 35 0 chr9 26152443 26152617 -116118827 - L1MA9 LINE L1 -829 5483 5304 * 1532 236 3 5 chr9 26152615 26152984 -116118460 - L1 LINE L1 -1962 4420 4053 478 228 0 0 chr9 26152983 26153084 -116118360 + L1 LINE L1 3713 3813 -2333 * 2930 270 69 17 chr9 26153074 26154030 -116117414 - L1 LINE L1 -3630 2752 1896 1386 276 3 19 chr9 26154030 26154400 -116117044 - MLT1A1 LTR MaLR -1 364 1 2930 270 69 17 chr9 26154400 26155376 -116116068 - L1 LINE L1 -4486 1896 972 647 298 63 44 chr9 26155747 26156170 -116115274 - L1 LINE L1 -5857 456 33 2324 176 69 0 chr9 26156174 26156611 -116114833 - L1MC3 LINE L1 -11 7774 7308 234 0 0 0 chr9 26157040 26157066 -116114378 + (TTTC)n Simple_repeat Simple_repeat 2 27 0 1994 114 17 3 chr9 26157851 26158140 -116113304 - AluSx SINE Alu -19 293 1 853 180 12 123 chr9 26158295 26158539 -116112905 + MER20 DNA MER1_type 1 217 -2 230 342 52 32 chr9 26160544 26160699 -116110745 - L2 LINE L2 -470 2844 2687 275 360 40 16 chr9 26161177 26161302 -116110142 + L2 LINE L2 3139 3266 -6 201 303 0 101 chr9 26162916 26163005 -116108439 + MIR SINE MIR 16 95 -113 189 0 0 0 chr9 26163394 26163415 -116108029 + (TA)n Simple_repeat Simple_repeat 1 21 0 268 107 71 0 chr9 26164433 26164517 -116106927 + (TCTA)n Simple_repeat Simple_repeat 1 90 0 21 36 0 0 chr9 26164577 26164605 -116106839 + AT_rich Low_complexity Low_complexity 1 28 0 2509 31 7 3 chr9 26164904 26165196 -116106248 - AluY SINE Alu -4 307 15 440 344 60 0 chr9 26165800 26166018 -116105426 + L2 LINE L2 2141 2371 -943 315 0 0 0 chr9 26167813 26167848 -116103596 + (CA)n Simple_repeat Simple_repeat 1 35 0 21 36 0 0 chr9 26167962 26167990 -116103454 + AT_rich Low_complexity Low_complexity 1 28 0 396 0 94 0 chr9 26168035 26168088 -116103356 - L1PA3 LINE L1 -1 6154 6097 2661 28 3 0 chr9 26168088 26168405 -116103039 + L1PA4 LINE L1 5762 6079 -76 2405 67 0 7 chr9 26168725 26169024 -116102420 + AluY SINE Alu 1 297 -14 273 265 15 0 chr9 26169133 26169201 -116102243 + MIR SINE MIR 85 153 -109 812 164 8 0 chr9 26169201 26169335 -116102109 + MER47A DNA MER2_type 4 138 -228 486 130 0 39 chr9 26169336 26169397 -116102047 - Tigger7 DNA MER2_type -27 2464 2405 2233 122 0 0 chr9 26169397 26169701 -116101743 - AluSx SINE Alu -8 304 1 486 130 0 39 chr9 26169701 26169716 -116101728 - Tigger7 DNA MER2_type -86 2405 2391 1331 228 15 0 chr9 26169731 26169990 -116101454 - Tigger7 DNA MER2_type -469 264 2 1354 179 8 0 chr9 26169991 26170226 -116101218 + MER47A DNA MER2_type 129 365 -1 262 309 0 12 chr9 26170227 26170311 -116101133 + MIR SINE MIR 153 235 -27 242 250 0 0 chr9 26170323 26170375 -116101069 + MIR SINE MIR 210 261 -1 1057 115 0 0 chr9 26170596 26170752 -116100692 + L1MA1 LINE L1 6143 6298 -4 216 172 35 35 chr9 26171674 26171761 -116099683 + (TA)n Simple_repeat Simple_repeat 2 88 0 495 33 0 0 chr9 26171771 26171832 -116099612 + (CA)n Simple_repeat Simple_repeat 2 62 0 1906 96 7 38 chr9 26172750 26173041 -116098403 + AluSx SINE Alu 1 282 -30 315 0 0 0 chr9 26173046 26173081 -116098363 + (TAA)n Simple_repeat Simple_repeat 2 36 0 224 150 125 0 chr9 26173196 26173236 -116098208 - MIR SINE MIR -69 139 95 284 306 105 7 chr9 26174314 26174457 -116096987 - L1ME3A LINE L1 -9 6230 6073 464 279 220 40 chr9 26174523 26174896 -116096548 + LTR16A1 LTR ERVL 1 440 -17 548 251 67 124 chr9 26174979 26175324 -116096120 - L1ME3A LINE L1 -216 6023 5727 661 239 50 6 chr9 26175324 26175504 -116095940 - MER5A DNA MER1_type 0 189 2 548 251 67 124 chr9 26175504 26175771 -116095673 - L1ME3A LINE L1 -512 5727 5446 324 321 156 18 chr9 26175857 26176081 -116095363 - L1ME3A LINE L1 -1144 5071 4817 305 324 71 18 chr9 26176115 26176307 -116095137 - L1ME3A LINE L1 -3707 2508 2301 997 261 13 8 chr9 26176307 26176545 -116094899 - MER8 DNA MER2_type 0 239 1 305 324 71 18 chr9 26176545 26176577 -116094867 - L1ME3A LINE L1 -3914 2301 2272 256 275 0 0 chr9 26176591 26176671 -116094773 - L1ME3A LINE L1 -4098 2298 2219 218 224 0 17 chr9 26176758 26176816 -116094628 + (CATA)n Simple_repeat Simple_repeat 3 59 0 706 243 40 52 chr9 26177474 26177725 -116093719 - LTR33 LTR ERVL -236 285 38 952 246 33 0 chr9 26178119 26178330 -116093114 + MER58A DNA MER1_type 1 218 -6 312 342 74 21 chr9 26178734 26178924 -116092520 - MIR SINE MIR -10 252 53 636 206 160 29 chr9 26180490 26180728 -116090716 - L1ME3A LINE L1 -172 6067 5799 4212 45 6 0 chr9 26181369 26181907 -116089537 - L1PA5 LINE L1 -3303 2843 2303 20103 49 7 6 chr9 26181907 26185229 -116086215 + L1PA5 LINE L1 2812 6146 -8 844 261 108 30 chr9 26186141 26186574 -116084870 - L1ME3A LINE L1 -418 5813 5357 515 278 70 29 chr9 26186608 26186881 -116084563 - L1ME3A LINE L1 -844 5371 5088 356 254 28 108 chr9 26186887 26187174 -116084270 - L1ME3A LINE L1 -1220 4995 4732 350 303 18 46 chr9 26187171 26187389 -116084055 - L1ME3A LINE L1 -4604 1792 1581 * 827 222 5 0 chr9 26187538 26187741 -116083703 - L1MC3 LINE L1 -1 7784 7581 349 307 168 3 chr9 26187741 26188044 -116083400 - L1ME3A LINE L1 -5157 1048 696 921 120 0 0 chr9 26188133 26188275 -116083169 + (TCCCC)n Simple_repeat Simple_repeat 2 143 0 1721 194 7 0 chr9 26188291 26188600 -116082844 - AluJb SINE Alu -1 311 1 244 301 64 68 chr9 26188780 26189016 -116082428 - L1ME3A LINE L1 -5951 445 211 1974 176 14 3 chr9 26189792 26190150 -116081294 - MER47A DNA MER2_type -3 363 2 357 102 0 0 chr9 26190160 26190219 -116081225 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 1206 102 0 0 chr9 26190256 26190432 -116081012 + (TA)n Simple_repeat Simple_repeat 1 176 0 307 299 35 0 chr9 26190449 26190536 -116080908 - L1MC4 LINE L1 -1339 6703 6614 21 57 0 0 chr9 26190559 26190594 -116080850 + AT_rich Low_complexity Low_complexity 1 35 0 546 269 14 7 chr9 26190729 26190874 -116080570 - L2 LINE L2 -1 3312 3167 2775 201 81 32 chr9 26191657 26191789 -116079655 - LTR48 LTR ERV1 0 787 663 2660 110 0 3 chr9 26191789 26192154 -116079290 - THE1B LTR MaLR 0 364 1 9817 118 41 28 chr9 26192156 26193714 -116077730 - THE1B-int LTR MaLR -2 1578 1 2698 113 0 0 chr9 26193714 26194078 -116077366 - THE1B LTR MaLR 0 364 1 2775 201 81 32 chr9 26194078 26194691 -116076753 - LTR48 LTR ERV1 -123 664 1 275 358 42 17 chr9 26195977 26196097 -116075347 - MIR SINE MIR -120 142 20 818 181 41 13 chr9 26198249 26198468 -116072976 - L1MC3 LINE L1 0 7769 6114 1416 189 102 0 chr9 26198469 26198744 -116072700 - AluJo SINE Alu -7 305 3 339 44 0 0 chr9 26199343 26199388 -116072056 + (TG)n Simple_repeat Simple_repeat 2 46 0 333 289 77 0 chr9 26199405 26199509 -116071935 - L2 LINE L2 -3 3310 3199 236 203 54 27 chr9 26200532 26200606 -116070838 - L1MC4 LINE L1 -1353 6689 6614 441 302 36 7 chr9 26201150 26201289 -116070155 + MIR SINE MIR 8 150 -112 704 332 83 34 chr9 26201553 26202045 -116069399 - L2 LINE L2 -17 3296 2781 1235 340 103 12 chr9 26202116 26202874 -116068570 - L2 LINE L2 -1281 2033 1207 456 35 0 0 chr9 26202958 26203016 -116068428 + (CTG)n Simple_repeat Simple_repeat 2 59 0 1363 226 50 3 chr9 26203480 26203817 -116067627 - L1MB3 LINE L1 -8 6175 5823 11732 174 37 19 chr9 26203823 26204684 -116066760 - L1M4c LINE L1 -3884 2500 1656 207 0 0 0 chr9 26204684 26204707 -116066737 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 11732 174 37 19 chr9 26204707 26206284 -116065160 - L1M4c LINE L1 -4728 1656 18 39 22 0 0 chr9 26207032 26207078 -116064366 + AT_rich Low_complexity Low_complexity 1 46 0 21 0 0 0 chr9 26207259 26207280 -116064164 + AT_rich Low_complexity Low_complexity 1 21 0 233 213 0 0 chr9 26207675 26207722 -116063722 + (TTCA)n Simple_repeat Simple_repeat 3 49 0 972 178 56 0 chr9 26207919 26208150 -116063294 + MER33 DNA MER1_type 48 291 -33 4442 188 29 59 chr9 26208157 26208568 -116062876 + L1MA10 LINE L1 4791 5213 -1121 1301 194 12 76 chr9 26208568 26208898 -116062546 + AluJo SINE Alu 1 309 -3 4442 188 29 59 chr9 26208898 26209921 -116061523 + L1MA10 LINE L1 5213 6163 -171 387 41 0 0 chr9 26209921 26209970 -116061474 + (CAT)n Simple_repeat Simple_repeat 3 51 0 4442 188 29 59 chr9 26209970 26210107 -116061337 + L1MA10 LINE L1 6163 6303 -31 256 157 78 0 chr9 26210141 26210192 -116061252 + MER33 DNA MER1_type 304 358 -5 33 43 0 0 chr9 26210284 26210331 -116061113 + AT_rich Low_complexity Low_complexity 1 47 0 25 31 0 0 chr9 26210384 26210416 -116061028 + AT_rich Low_complexity Low_complexity 1 32 0 5745 94 67 2 chr9 26210432 26211752 -116059692 - L1PA10 LINE L1 -2 6166 4813 2106 134 0 3 chr9 26213257 26213563 -116057881 + AluSc SINE Alu 3 307 -2 1796 167 146 3 chr9 26213639 26214010 -116057434 - MSTA LTR MaLR 0 428 5 363 272 9 26 chr9 26214081 26214195 -116057249 - L1MC4 LINE L1 -980 7062 6951 353 344 65 45 chr9 26214673 26214920 -116056524 - L3b LINE CR1 -55 1528 1277 184 329 110 0 chr9 26215038 26215120 -116056324 - MIR SINE MIR -7 255 165 1532 229 169 18 chr9 26215181 26215618 -116055826 + MLT2B1 LTR ERVL 18 520 0 315 253 67 0 chr9 26215619 26215694 -116055750 - MIR SINE MIR -182 80 1 223 269 0 0 chr9 26215749 26215801 -116055643 - MIR SINE MIR -110 152 101 651 196 14 184 chr9 26215805 26216152 -116055292 - MER4C LTR ERV1 -37 428 141 2300 90 7 7 chr9 26216644 26216954 -116054490 + AluSg SINE Alu 1 310 0 21 36 0 0 chr9 26216969 26216997 -116054447 + AT_rich Low_complexity Low_complexity 1 28 0 820 54 36 0 chr9 26216997 26217108 -116054336 - L1PA3 LINE L1 0 6155 6041 691 286 156 53 chr9 26217989 26218583 -116052861 - L2 LINE L2 -3 3310 2588 1825 143 60 33 chr9 26218583 26218948 -116052496 - THE1C LTR MaLR 0 375 1 691 286 156 53 chr9 26218948 26219288 -116052156 - L2 LINE L2 -725 2588 2284 1195 245 110 0 chr9 26219321 26219631 -116051813 + MER2 DNA MER2_type 2 345 0 498 307 49 7 chr9 26219816 26219971 -116051473 - MIR SINE MIR -66 142 21 235 394 19 7 chr9 26219976 26220131 -116051313 - L2 LINE L2 -1150 2164 2008 583 238 106 12 chr9 26220356 26220516 -116050928 - MIR SINE MIR -72 190 16 475 292 80 48 chr9 26220532 26220737 -116050707 + L1ME LINE L1 5088 5285 -884 2316 101 3 0 chr9 26220737 26221034 -116050410 + AluSp SINE Alu 1 298 -15 475 292 80 48 chr9 26221034 26221423 -116050021 + L1ME LINE L1 5285 5707 -462 2270 152 70 10 chr9 26221423 26221825 -116049619 - MSTB LTR MaLR 0 426 1 8218 184 42 34 chr9 26221836 26223457 -116047987 - MSTB-int LTR MaLR -17 1634 1 1495 207 146 16 chr9 26223457 26223649 -116047795 - MSTB LTR MaLR 0 426 260 213 39 0 0 chr9 26223649 26223675 -116047769 + (GA)n Simple_repeat Simple_repeat 2 27 0 1495 207 146 16 chr9 26223675 26223859 -116047585 - MSTB LTR MaLR -166 260 1 29 0 0 0 chr9 26223864 26223893 -116047551 + AT_rich Low_complexity Low_complexity 1 29 0 302 237 0 13 chr9 26223897 26223983 -116047461 + L1ME LINE L1 5724 5808 -356 323 311 198 21 chr9 26224026 26224360 -116047084 - L2 LINE L2 -1609 1705 1313 211 232 125 0 chr9 26224636 26224692 -116046752 - L2 LINE L2 -1 3271 3209 206 234 149 0 chr9 26224792 26224886 -116046558 - L2 LINE L2 -147 3166 3059 904 272 56 91 chr9 26224890 26225061 -116046383 - L2 LINE L2 -1463 1851 1675 1827 199 91 25 chr9 26225061 26225500 -116045944 + MLT2B1 LTR ERVL 3 478 -42 180 0 0 0 chr9 26225500 26225520 -116045924 + (TC)n Simple_repeat Simple_repeat 1 20 0 1827 199 91 25 chr9 26225520 26225562 -116045882 + MLT2B1 LTR ERVL 478 516 -4 904 272 56 91 chr9 26225562 26225948 -116045496 - L2 LINE L2 -1639 1675 1314 315 0 0 0 chr9 26227057 26227092 -116044352 + (TG)n Simple_repeat Simple_repeat 1 35 0 21 82 0 0 chr9 26227246 26227295 -116044149 + AT_rich Low_complexity Low_complexity 1 49 0 186 325 49 41 chr9 26228390 26228513 -116042931 + MIR SINE MIR 102 225 -37 208 258 0 45 chr9 26229125 26229191 -116042253 - MIR SINE MIR -42 220 158 397 313 17 34 chr9 26229291 26229470 -116041974 + MER117 DNA MER1_type 1 176 -21 248 247 55 27 chr9 26230565 26230638 -116040806 + L2 LINE L2 2213 2287 -1027 199 336 35 26 chr9 26230667 26230783 -116040661 + L2 LINE L2 2440 2556 -758 228 313 104 0 chr9 26231063 26231130 -116040314 + MIR SINE MIR 33 106 -156 332 362 67 82 chr9 26231856 26232171 -116039273 + L2 LINE L2 2963 3272 0 245 222 42 14 chr9 26232543 26232615 -116038829 + CT-rich Low_complexity Low_complexity 6 79 0 245 343 9 9 chr9 26233657 26233762 -116037682 - L1MC/D LINE L1 -2020 5788 5684 405 302 99 21 chr9 26234039 26234231 -116037213 - MIR SINE MIR -17 245 39 208 383 53 0 chr9 26234482 26234576 -116036868 + L2 LINE L2 3215 3313 0 383 151 0 0 chr9 26237441 26237514 -116033930 - L1MA8 LINE L1 0 6291 6219 22 35 0 0 chr9 26238156 26238185 -116033259 + AT_rich Low_complexity Low_complexity 1 29 0 2233 141 0 5 chr9 26238619 26238989 -116032455 - L1PB1 LINE L1 -1 6150 5783 300 169 0 0 chr9 26239000 26239077 -116032367 + (TA)n Simple_repeat Simple_repeat 2 78 0 6234 19 35 0 chr9 26239180 26239912 -116031532 - L1PA3 LINE L1 0 6155 5398 * 10167 27 1 0 chr9 26239906 26241126 -116030318 + L1PA3 LINE L1 4163 5383 -763 3299 94 62 3 chr9 26241122 26241702 -116029742 - L1PB1 LINE L1 -371 5780 5169 * 1031 175 41 0 chr9 26241682 26241876 -116029568 - L1PBa LINE L1 -5270 1593 1392 * 834 221 0 15 chr9 26241873 26242068 -116029376 - L1PBa LINE L1 -6666 197 6 * 377 329 58 0 chr9 26242415 26242552 -116028892 - MIR SINE MIR -70 192 48 1724 174 3 7 chr9 26243567 26243849 -116027595 + AluJb SINE Alu 2 282 -30 300 53 0 0 chr9 26243853 26243891 -116027553 + (TC)n Simple_repeat Simple_repeat 1 38 0 193 308 68 43 chr9 26243912 26244029 -116027415 + MIR SINE MIR 102 221 -41 597 279 19 0 chr9 26244037 26244191 -116027253 - MIR SINE MIR -21 241 85 920 221 211 33 chr9 26244191 26244522 -116026922 + MSTD LTR MaLR 1 390 -6 216 358 0 0 chr9 26244524 26244591 -116026853 - MIR SINE MIR -183 79 13 1704 192 7 0 chr9 26245881 26246173 -116025271 + AluJo SINE Alu 2 295 -17 323 351 85 6 chr9 26246330 26246495 -116024949 - MER5B DNA MER1_type 0 178 1 183 298 53 0 chr9 26246506 26246563 -116024881 + MER5B DNA MER1_type 119 178 0 203 225 0 0 chr9 26246919 26246959 -116024485 - L2 LINE L2 -17 3255 3216 868 262 37 12 chr9 26246987 26247231 -116024213 - MIR SINE MIR 0 262 13 7125 50 7 0 chr9 26248946 26249828 -116021616 + L1PA7 LINE L1 5259 6146 -8 207 0 0 0 chr9 26251038 26251061 -116020383 + (T)n Simple_repeat Simple_repeat 1 23 0 255 103 0 0 chr9 26252497 26252516 -116018928 + (TG)n Simple_repeat Simple_repeat 1 58 0 255 103 0 0 chr9 26252516 26252555 -116018889 + (TG)n Simple_repeat Simple_repeat 2 40 0 25 51 0 0 chr9 26252651 26252690 -116018754 + AT_rich Low_complexity Low_complexity 1 39 0 22 0 0 0 chr9 26255500 26255522 -116015922 + AT_rich Low_complexity Low_complexity 1 22 0 195 184 41 20 chr9 26256115 26256164 -116015280 - L2 LINE L2 0 3313 3264 281 270 212 16 chr9 26256382 26256571 -116014873 + MIR SINE MIR 35 260 -2 1840 174 33 30 chr9 26257499 26257862 -116013582 - THE1B LTR MaLR 0 364 1 10985 108 12 10 chr9 26257862 26258170 -116013274 - THE1B-int LTR MaLR 0 1580 1274 2822 3 0 0 chr9 26258170 26258474 -116012970 - AluYa5 SINE Alu -7 304 1 10985 108 12 10 chr9 26258474 26259742 -116011702 - THE1B-int LTR MaLR -306 1274 1 1835 158 38 49 chr9 26259742 26260110 -116011334 - THE1B LTR MaLR 0 364 1 1552 209 18 4 chr9 26260480 26260758 -116010686 - AluJb SINE Alu -30 282 1 222 329 161 7 chr9 26260817 26260960 -116010484 - MIR SINE MIR -49 213 49 21 0 0 0 chr9 26261749 26261770 -116009674 + AT_rich Low_complexity Low_complexity 1 21 0 243 0 0 0 chr9 26261823 26261850 -116009594 + (TA)n Simple_repeat Simple_repeat 2 28 0 294 307 68 0 chr9 26261926 26262014 -116009430 - L2 LINE L2 -26 3246 3153 468 280 153 11 chr9 26262068 26262257 -116009187 + MIR SINE MIR 46 261 -1 374 385 52 38 chr9 26262609 26263030 -116008414 - L2 LINE L2 -527 2787 2361 3523 171 52 16 chr9 26263200 26263820 -116007624 + L1MA3 LINE L1 18 659 -6906 12743 162 13 9 chr9 26263828 26265957 -116005487 + L1MA3 LINE L1 805 2941 -4624 17286 194 60 8 chr9 26265986 26272569 -115998875 - L1P4 LINE L1 -696 6910 7 1452 204 42 7 chr9 26272568 26272974 -115998470 + L1MA3 LINE L1 4305 4724 -2841 * 5897 144 16 44 chr9 26272984 26274382 -115997062 + L1MA3 LINE L1 6380 7724 0 2757 123 84 71 chr9 26274906 26275130 -115996314 - MER4A LTR ERV1 0 600 381 2481 66 0 0 chr9 26275130 26275431 -115996013 + AluY SINE Alu 1 301 -10 2757 123 84 71 chr9 26275431 26275798 -115995646 - MER4A LTR ERV1 -219 381 1 191 342 72 18 chr9 26276236 26276347 -115995097 - MIR SINE MIR -127 135 19 203 280 0 0 chr9 26276405 26276455 -115994989 - L3 LINE CR1 -254 1323 1274 295 246 30 46 chr9 26276504 26276619 -115994825 - MER101 LTR ERV1 -14 556 341 1044 174 119 0 chr9 26276778 26276979 -115994465 - MER101B LTR ERV1 -342 228 4 586 282 74 10 chr9 26276986 26277188 -115994256 - LTR49-int LTR ERV1 -1023 7097 6883 1916 175 26 17 chr9 26277366 26277788 -115993656 - LTR49-int LTR ERV1 -1830 4501 4076 304 140 60 70 chr9 26277801 26277901 -115993543 - LTR49-int LTR ERV1 -2369 2567 2469 * 1558 208 77 42 chr9 26277892 26278581 -115992863 - LTR49-int LTR ERV1 -2554 2569 1857 276 169 0 0 chr9 26278576 26278635 -115992809 - LTR49-int LTR ERV1 -3870 2888 2830 * 437 181 39 216 chr9 26278758 26278990 -115992454 - LTR49-int LTR ERV1 -2882 3449 3259 1065 193 69 43 chr9 26279038 26279571 -115991873 - LTR49-int LTR ERV1 -3059 3272 1211 601 250 59 7 chr9 26279571 26279723 -115991721 - MER34C LTR ERV1 -181 404 245 535 184 28 127 chr9 26279725 26279937 -115991507 - LTR49-int LTR ERV1 -4067 1056 866 192 77 0 0 chr9 26279952 26279978 -115991466 + (CAA)n Simple_repeat Simple_repeat 2 27 0 831 194 9 13 chr9 26280064 26280237 -115991207 - LTR49-int LTR ERV1 -2790 2090 1380 2322 198 52 25 chr9 26280347 26281163 -115990281 - LTR49-int LTR ERV1 -3268 1612 516 1860 191 19 25 chr9 26281184 26281614 -115989830 - LTR49-int LTR ERV1 -4617 1329 1 565 217 14 14 chr9 26281616 26281754 -115989690 - LTR49 LTR ERV1 0 595 458 337 222 13 52 chr9 26282672 26282790 -115988654 - MER101B LTR ERV1 -1 538 361 1262 178 13 13 chr9 26282962 26283192 -115988252 - MER101B LTR ERV1 -340 230 1 257 271 0 34 chr9 26283549 26283608 -115987836 - MER2 DNA MER2_type 0 345 289 2296 183 23 72 chr9 26283608 26284208 -115987236 - L1MB7 LINE L1 -87 6097 5527 231 167 0 0 chr9 26284317 26284359 -115987085 + (TG)n Simple_repeat Simple_repeat 1 42 0 1513 191 9 38 chr9 26285029 26285348 -115986096 - AluJo SINE Alu -2 310 1 23 92 0 0 chr9 26336467 26336532 -115934912 + AT_rich Low_complexity Low_complexity 1 65 0 7292 45 0 3 chr9 26336563 26337638 -115933806 - L1PA5 LINE L1 -1 6153 5082 4608 48 5 0 chr9 26337643 26338221 -115933223 - L1PA5 LINE L1 -1171 4975 4395 21979 64 4 0 chr9 26338222 26341102 -115930342 + L1P LINE L1 690 3580 -2566 332 318 11 45 chr9 26341991 26342170 -115929274 + GA-rich Low_complexity Low_complexity 5 177 0 225 0 0 0 chr9 26342455 26342480 -115928964 + (TTTTA)n Simple_repeat Simple_repeat 4 28 0 7043 31 1 0 chr9 26342480 26343312 -115928132 - L1PA3 LINE L1 -10 6145 5313 12258 25 2 0 chr9 26343312 26344773 -115926671 + L1PA3 LINE L1 3847 5310 -836 516 282 100 6 chr9 26344773 26344943 -115926501 + MER5A DNA MER1_type 4 189 0 1091 224 133 23 chr9 26345056 26345448 -115925996 - MER63B DNA MER1_type -1 435 1 270 116 0 0 chr9 26345691 26345734 -115925710 + (TCTA)n Simple_repeat Simple_repeat 1 43 0 1458 206 11 4 chr9 26345739 26346020 -115925424 - AluJo SINE Alu -25 287 5 2369 72 3 3 chr9 26346059 26346366 -115925078 + AluYb8 SINE Alu 1 307 -11 6358 79 28 0 chr9 26346366 26347505 -115923939 + L1PA7 LINE L1 4985 6148 -6 31 58 0 0 chr9 26347745 26347797 -115923647 + AT_rich Low_complexity Low_complexity 1 52 0 22 0 0 0 chr9 26348202 26348224 -115923220 + AT_rich Low_complexity Low_complexity 1 22 0 31 82 0 0 chr9 26348412 26348485 -115922959 + AT_rich Low_complexity Low_complexity 1 73 0 296 62 0 21 chr9 26348557 26348605 -115922839 + (TTTTG)n Simple_repeat Simple_repeat 4 50 0 7082 11 0 1 chr9 26348605 26349407 -115922037 - L1PA2 LINE L1 -16 6139 5339 234 0 0 0 chr9 26350059 26350085 -115921359 + (CAA)n Simple_repeat Simple_repeat 2 27 0 183 80 0 0 chr9 26350098 26350123 -115921321 + (CA)n Simple_repeat Simple_repeat 2 26 0 195 349 82 14 chr9 26350421 26350464 -115920980 + L2 LINE L2 3158 3197 -116 345 24 0 0 chr9 26350464 26350506 -115920938 + (TTG)n Simple_repeat Simple_repeat 2 43 0 195 349 82 14 chr9 26350506 26350608 -115920836 + L2 LINE L2 3197 3313 0 597 265 63 34 chr9 26351796 26352034 -115919410 - MIR SINE MIR -14 248 4 363 192 0 0 chr9 26352303 26352376 -115919068 + (TA)n Simple_repeat Simple_repeat 1 73 0 1978 120 4 0 chr9 26352376 26352650 -115918794 - AluSc SINE Alu -32 277 3 396 283 133 6 chr9 26352652 26352818 -115918626 - MIR SINE MIR -58 204 18 1417 283 99 29 chr9 26352914 26353592 -115917852 + L1ME3A LINE L1 5436 6168 -2 393 299 224 10 chr9 26354372 26354573 -115916871 + MIR SINE MIR 19 262 0 3140 118 10 6 chr9 26356121 26356612 -115914832 - L1PB1 LINE L1 -2 6149 5657 2123 118 16 41 chr9 26356874 26357238 -115914206 + THE1C LTR MaLR 19 373 -2 1178 276 27 20 chr9 26358150 26358592 -115912852 - L1ME3A LINE L1 -196 5974 5530 1251 278 127 52 chr9 26358917 26359550 -115911894 - L1ME3A LINE L1 -1460 4686 4102 3094 181 28 21 chr9 26359550 26360225 -115911219 - L1MB3 LINE L1 -2 6181 5502 1251 278 127 52 chr9 26360225 26361252 -115910192 - L1ME3A LINE L1 -2044 4102 2900 23 0 0 0 chr9 26362869 26362892 -115908552 + AT_rich Low_complexity Low_complexity 1 23 0 665 272 98 34 chr9 26365336 26365571 -115905873 + MIR SINE MIR 7 256 -6 189 337 0 23 chr9 26366699 26366785 -115904659 + MIR SINE MIR 178 261 -1 255 61 0 0 chr9 26367619 26367652 -115903792 + (TA)n Simple_repeat Simple_repeat 2 34 0 491 347 43 86 chr9 26367702 26368123 -115903321 + L2 LINE L2 2865 3267 -5 2027 126 3 0 chr9 26368529 26368864 -115902580 + AluSx SINE Alu 1 336 0 1238 119 0 6 chr9 26368864 26369074 -115902370 + AluSq SINE Alu 110 318 0 21 0 0 0 chr9 26369836 26369857 -115901587 + AT_rich Low_complexity Low_complexity 1 21 0 399 277 122 34 chr9 26370310 26370458 -115900986 - MIR SINE MIR -13 249 89 944 336 78 10 chr9 26370580 26371068 -115900376 + L2 LINE L2 2035 2555 -759 241 299 159 9 chr9 26371347 26371454 -115899990 + L2 LINE L2 3142 3264 -8 198 0 0 0 chr9 26371644 26371666 -115899778 + (T)n Simple_repeat Simple_repeat 1 22 0 28 0 0 0 chr9 26372652 26372680 -115898764 + AT_rich Low_complexity Low_complexity 1 28 0 1364 208 39 29 chr9 26372823 26373131 -115898313 - AluJb SINE Alu -1 311 1 2137 121 3 13 chr9 26373152 26373459 -115897985 - AluSx SINE Alu -8 304 1 242 128 26 0 chr9 26374071 26374110 -115897334 + L2 LINE L2 3263 3302 -11 516 297 88 74 chr9 26375005 26375507 -115895937 + HAL1 LINE L1 4 512 -1995 1606 251 142 57 chr9 26375675 26376550 -115894894 + HAL1 LINE L1 750 1698 -809 379 328 128 10 chr9 26376752 26376947 -115894497 - L3b LINE CR1 -53 1530 1313 218 191 0 0 chr9 26377000 26377042 -115894402 + CT-rich Low_complexity Low_complexity 2 43 0 795 11 0 0 chr9 26377107 26377199 -115894245 - L1PA3 LINE L1 -3 6152 6061 27 87 0 0 chr9 26377639 26377708 -115893736 + AT_rich Low_complexity Low_complexity 1 69 0 234 220 0 0 chr9 26379483 26379542 -115891902 + (TA)n Simple_repeat Simple_repeat 2 60 0 431 241 56 9 chr9 26379684 26379792 -115891652 - MIR SINE MIR -103 159 47 311 305 66 13 chr9 26381451 26381602 -115889842 - L2 LINE L2 -106 3207 3049 400 306 65 32 chr9 26383025 26383211 -115888233 - MIR SINE MIR -1 261 70 22 0 0 0 chr9 26383530 26383552 -115887892 + AT_rich Low_complexity Low_complexity 1 22 0 372 254 113 0 chr9 26384248 26384264 -115887180 - L1MA10 LINE L1 -7 6327 6312 1082 224 68 60 chr9 26384264 26384539 -115886905 - L1ME1 LINE L1 -14 6152 5870 1916 173 0 0 chr9 26384539 26384834 -115886610 + AluSx SINE Alu 2 296 -16 1082 224 68 60 chr9 26384834 26385026 -115886418 - L1ME1 LINE L1 -296 5870 5681 2315 128 47 11 chr9 26385071 26385431 -115886013 + THE1C LTR MaLR 3 375 0 9434 138 32 14 chr9 26385431 26386980 -115884464 + THE1C-int LTR MaLR 1 1577 -3 2008 145 56 11 chr9 26386984 26387342 -115884102 + THE1C LTR MaLR 2 375 0 21 0 0 0 chr9 26388502 26388523 -115882921 + AT_rich Low_complexity Low_complexity 1 21 0 434 61 15 0 chr9 26389032 26389098 -115882346 + (CA)n Simple_repeat Simple_repeat 2 68 0 23 0 0 0 chr9 26389605 26389628 -115881816 + AT_rich Low_complexity Low_complexity 1 23 0 229 291 0 0 chr9 26389815 26389870 -115881574 - MIR3 SINE MIR -54 154 100 202 146 24 0 chr9 26390468 26390509 -115880935 + (TA)n Simple_repeat Simple_repeat 2 43 0 295 284 110 40 chr9 26390517 26390707 -115880737 - MIR SINE MIR -57 205 4 559 303 194 46 chr9 26392439 26392806 -115878638 + L2 LINE L2 2831 3251 -62 185 283 50 17 chr9 26392948 26393008 -115878436 - MIR SINE MIR -95 167 106 3330 193 19 10 chr9 26393008 26393699 -115877745 + L1PB4 LINE L1 5458 6154 -2 22 35 0 0 chr9 26393777 26393806 -115877638 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr9 26394072 26394095 -115877349 + AT_rich Low_complexity Low_complexity 1 23 0 1776 208 62 11 chr9 26394478 26394915 -115876529 - MER65C LTR ERV1 0 461 3 557 182 19 13 chr9 26397908 26398062 -115873382 + CT-rich Low_complexity Low_complexity 2 156 0 19419 48 14 1 chr9 26398947 26401431 -115870013 - L1P LINE L1 -1946 4200 1685 1351 37 0 0 chr9 26401430 26401593 -115869851 + L1P LINE L1 4196 4358 -1788 * 209 361 71 59 chr9 26401755 26401993 -115869451 + MIR SINE MIR 1 241 -21 22 0 0 0 chr9 26402133 26402155 -115869289 + AT_rich Low_complexity Low_complexity 1 22 0 185 350 41 0 chr9 26402871 26402968 -115868476 + L3 LINE CR1 304 404 -1173 622 192 0 0 chr9 26403356 26403460 -115867984 + MER33 DNA MER1_type 6 109 -215 669 177 39 0 chr9 26404763 26404893 -115866551 + MER3 DNA MER1_type 40 127 -82 1370 172 89 11 chr9 26404895 26405243 -115866201 + MER3 DNA MER1_type 2238 2612 0 617 225 0 21 chr9 26405536 26405678 -115865766 - FLAM_C SINE Alu -4 139 1 23 33 0 0 chr9 26405678 26405708 -115865736 + AT_rich Low_complexity Low_complexity 1 30 0 332 257 43 21 chr9 26406032 26406172 -115865272 - L1ME4a LINE L1 -5 6116 5974 223 295 67 57 chr9 26407572 26407677 -115863767 - L2 LINE L2 -5 3308 3203 201 227 0 23 chr9 26407773 26407817 -115863627 - L2 LINE L2 -212 3060 3018 192 372 60 70 chr9 26407807 26408221 -115863223 - L2 LINE L2 -17 3255 2846 * 324 333 0 9 chr9 26408649 26408757 -115862687 + MIR SINE MIR 50 156 -106 389 347 91 56 chr9 26408843 26409382 -115862062 - L2 LINE L2 -955 2359 1802 2078 97 13 3 chr9 26409576 26409874 -115861570 + AluSg SINE Alu 1 301 -9 303 122 0 0 chr9 26410180 26410229 -115861215 + (CA)n Simple_repeat Simple_repeat 2 50 0 4451 202 25 8 chr9 26410800 26412057 -115859387 - L1PB1 LINE L1 -655 5496 4216 4347 110 12 3 chr9 26412058 26412706 -115858738 + L1PB1 LINE L1 5497 6150 -1 2701 3 0 0 chr9 26413326 26413620 -115857824 - AluYa5 SINE Alu -17 294 1 761 211 0 0 chr9 26413623 26413765 -115857679 - FLAM_C SINE Alu -1 142 1 27 29 0 0 chr9 26413968 26414002 -115857442 + AT_rich Low_complexity Low_complexity 1 34 0 1985 128 10 0 chr9 26414150 26414439 -115857005 - AluSq SINE Alu -21 292 1 225 159 0 0 chr9 26414471 26414515 -115856929 + (TA)n Simple_repeat Simple_repeat 2 45 0 289 298 88 25 chr9 26414568 26414806 -115856638 - L1M4 LINE L1 -3162 2984 2732 563 274 79 19 chr9 26414940 26415155 -115856289 - MLT1J2 LTR MaLR -220 230 3 342 320 101 0 chr9 26415485 26415663 -115855781 - L1M4 LINE L1 -3816 2330 2135 346 350 106 18 chr9 26416934 26417491 -115853953 + L1MC4a LINE L1 5303 5908 -1900 204 123 77 62 chr9 26417694 26417759 -115853685 + A-rich Low_complexity Low_complexity 5 70 0 218 306 24 47 chr9 26418188 26418273 -115853171 + MIR SINE MIR 6 88 -174 382 253 157 30 chr9 26418398 26418564 -115852880 + MIR SINE MIR 50 236 -26 233 383 16 8 chr9 26418933 26419061 -115852383 + MIR3 SINE MIR 77 205 -3 324 0 0 0 chr9 26419356 26419392 -115852052 + (T)n Simple_repeat Simple_repeat 1 36 0 522 0 0 0 chr9 26422287 26422345 -115849099 + (TTCC)n Simple_repeat Simple_repeat 1 58 0 2044 121 7 10 chr9 26422346 26422816 -115848628 - AluSp SINE Alu 0 313 3 333 362 0 16 chr9 26426708 26426835 -115844609 - MIR SINE MIR -65 143 19 372 342 61 0 chr9 26427236 26427432 -115844012 - MIR SINE MIR 0 262 55 25 0 0 0 chr9 26428281 26428306 -115843138 + AT_rich Low_complexity Low_complexity 1 25 0 279 250 0 0 chr9 26429767 26429819 -115841625 - L2 LINE L2 -7 3306 3255 309 51 0 0 chr9 26429952 26429991 -115841453 + (CA)n Simple_repeat Simple_repeat 2 40 0 23 0 0 0 chr9 26430015 26430038 -115841406 + AT_rich Low_complexity Low_complexity 1 23 0 399 185 22 43 chr9 26430408 26430500 -115840944 - MER63 DNA MER1_type -82 754 39 492 260 31 52 chr9 26432097 26432289 -115839155 + MIR SINE MIR 75 262 0 682 209 128 5 chr9 26432470 26432657 -115838787 + MER6B DNA MER2_type 1 210 0 206 284 87 43 chr9 26432713 26432967 -115838477 + L2 LINE L2 1917 2181 -1133 315 311 67 28 chr9 26434299 26434479 -115836965 - MIR SINE MIR -73 189 3 550 349 133 26 chr9 26434949 26435628 -115835816 - L2 LINE L2 0 3272 2527 456 264 18 42 chr9 26435898 26436065 -115835379 + MIR SINE MIR 2 164 -98 994 350 63 35 chr9 26436119 26436751 -115834693 - L2 LINE L2 -959 2355 1706 380 204 30 106 chr9 26437316 26437448 -115833996 - L2 LINE L2 -17 3296 3175 292 320 195 30 chr9 26438524 26438724 -115832720 + MIR SINE MIR 3 235 -27 192 214 54 54 chr9 26438690 26438746 -115832698 + L2 LINE L2 3207 3262 -10 * 2361 156 36 5 chr9 26439295 26439737 -115831707 - L1PA13 LINE L1 -2 6161 5706 492 299 76 11 chr9 26441654 26441838 -115829606 - L2 LINE L2 0 3313 3118 617 256 12 23 chr9 26442233 26442405 -115829039 + MER63A DNA MER1_type 41 210 0 1751 249 48 38 chr9 26442683 26443265 -115828179 + MLT1G LTR MaLR 1 588 -2 366 259 80 82 chr9 26443822 26444151 -115827293 - MLT1H LTR MaLR -4 545 125 2771 280 76 41 chr9 26444850 26447164 -115824280 - L1ME2 LINE L1 0 6233 3818 2461 54 0 0 chr9 26447165 26447461 -115823983 - AluY SINE Alu -14 297 2 1287 79 69 0 chr9 26447481 26447670 -115823774 - L1PA11 LINE L1 -2 6172 5971 322 311 231 11 chr9 26447670 26447754 -115823690 - L1ME2 LINE L1 -4419 1977 1913 1892 170 25 22 chr9 26447754 26448118 -115823326 - MLT1A1 LTR MaLR 0 365 1 322 311 231 11 chr9 26448118 26448297 -115823147 - L1ME2 LINE L1 -4483 1913 1656 337 336 124 12 chr9 26448335 26448576 -115822868 - L1ME2 LINE L1 -5257 948 681 221 290 65 19 chr9 26449862 26449969 -115821475 + MIR SINE MIR 96 207 -55 3086 45 0 0 chr9 26450147 26450524 -115820920 - L1PA5 LINE L1 -8 6146 5770 33883 34 17 1 chr9 26450536 26456564 -115814880 - L1PA2 LINE L1 0 6155 3 1344 55 2 3 chr9 26456564 26456743 -115814701 - L1PA5 LINE L1 -371 5783 5607 208 300 17 0 chr9 26460240 26460300 -115811144 + MIR SINE MIR 87 147 -61 3766 153 27 2 chr9 26460862 26461494 -115809950 - Tigger1 DNA MER2_type 0 2418 1771 8822 151 39 10 chr9 26461494 26463077 -115808367 - Tigger1 DNA MER2_type -788 1630 2 662 204 0 0 chr9 26464106 26464214 -115807230 + Tigger3(Golem) DNA MER2_type 2 109 -2920 * 3794 149 67 12 chr9 26464213 26464959 -115806485 + Tigger3(Golem) DNA MER2_type 2241 3027 -2 213 39 0 0 chr9 26465240 26465266 -115806178 + (TA)n Simple_repeat Simple_repeat 1 26 0 382 288 112 36 chr9 26465401 26465984 -115805460 + L1M4 LINE L1 2884 3510 -2636 594 287 162 14 chr9 26466029 26466586 -115804858 + L1M4 LINE L1 4326 4964 -1182 24 0 0 0 chr9 26467122 26467146 -115804298 + AT_rich Low_complexity Low_complexity 1 24 0 210 282 153 24 chr9 26468726 26468850 -115802594 + MER5B DNA MER1_type 38 177 -1 24 53 0 0 chr9 26469318 26469356 -115802088 + AT_rich Low_complexity Low_complexity 1 38 0 214 309 0 0 chr9 26469671 26469726 -115801718 + (TA)n Simple_repeat Simple_repeat 1 55 0 249 401 18 6 chr9 26470422 26470589 -115800855 - L2 LINE L2 -1268 2046 1878 279 79 0 0 chr9 26471167 26471205 -115800239 + (T)n Simple_repeat Simple_repeat 1 38 0 267 31 0 0 chr9 26471357 26471389 -115800055 + (TTTG)n Simple_repeat Simple_repeat 3 34 0 1930 122 0 0 chr9 26471402 26471673 -115799771 - AluSg SINE Alu -39 271 1 364 311 110 28 chr9 26472087 26472405 -115799039 - L1MC4 LINE L1 -369 7673 7330 306 0 0 0 chr9 26472497 26472531 -115798913 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 264 242 24 40 chr9 26472553 26472677 -115798767 - L1MC5 LINE L1 -738 7223 7102 26 30 0 0 chr9 26473385 26473418 -115798026 + AT_rich Low_complexity Low_complexity 1 33 0 535 280 106 32 chr9 26473912 26474130 -115797314 - L2 LINE L2 -639 2675 2442 27 100 0 0 chr9 26474362 26474452 -115796992 + AT_rich Low_complexity Low_complexity 1 90 0 358 311 77 26 chr9 26474461 26474734 -115796710 - HAL1 LINE L1 -211 2296 2010 242 256 188 8 chr9 26474854 26474944 -115796500 - HAL1 LINE L1 -709 1798 1726 732 232 57 0 chr9 26474944 26475121 -115796323 - MER5A DNA MER1_type -1 188 2 242 256 188 8 chr9 26475121 26475163 -115796281 - HAL1 LINE L1 -781 1726 1642 189 107 0 0 chr9 26475429 26475457 -115795987 + (CAA)n Simple_repeat Simple_repeat 1 28 0 311 273 83 75 chr9 26475713 26476061 -115795383 - HAL1 LINE L1 -1045 1462 1112 210 71 0 0 chr9 26476454 26476482 -115794962 + (T)n Simple_repeat Simple_repeat 1 28 0 230 315 25 74 chr9 26476569 26476731 -115794713 - HAL1 LINE L1 -1871 636 483 448 292 17 17 chr9 26477022 26477142 -115794302 + L2 LINE L2 3150 3269 -3 342 0 0 0 chr9 26478056 26478094 -115793350 + (TG)n Simple_repeat Simple_repeat 2 39 0 446 303 21 7 chr9 26478887 26479032 -115792412 + L2 LINE L2 3167 3313 0 236 196 0 0 chr9 26479514 26479560 -115791884 + (CATA)n Simple_repeat Simple_repeat 1 46 0 22 35 0 0 chr9 26480486 26480515 -115790929 + AT_rich Low_complexity Low_complexity 1 29 0 366 274 183 11 chr9 26481232 26481407 -115790037 + MIR SINE MIR 58 262 0 261 313 21 0 chr9 26482556 26482652 -115788792 - L3 LINE CR1 -573 1004 907 209 244 0 24 chr9 26484948 26485030 -115786414 + CT-rich Low_complexity Low_complexity 3 82 0 2043 84 9 75 chr9 26485154 26485474 -115785970 - AluSc SINE Alu -10 299 1 267 259 0 0 chr9 26486028 26486086 -115785358 + (TG)n Simple_repeat Simple_repeat 1 58 0 247 352 22 0 chr9 26486542 26486633 -115784811 + MIR3 SINE MIR 67 159 -49 223 229 21 0 chr9 26486850 26486898 -115784546 + MIR3 SINE MIR 150 198 -10 320 346 149 5 chr9 26488538 26488726 -115782718 + MIR SINE MIR 13 227 -35 876 222 9 47 chr9 26488823 26489035 -115782409 + MER20 DNA MER1_type 16 219 0 27 73 0 0 chr9 26492691 26492746 -115778698 + AT_rich Low_complexity Low_complexity 1 55 0 311 351 48 25 chr9 26493443 26493654 -115777790 - MIR SINE MIR -39 223 5 507 318 91 9 chr9 26494236 26494456 -115776988 - MIR SINE MIR -6 256 19 3305 180 109 9 chr9 26494712 26495463 -115775981 - LTR1B LTR ERV1 0 826 1 32 67 0 0 chr9 26495471 26495531 -115775913 + AT_rich Low_complexity Low_complexity 1 60 0 216 333 145 13 chr9 26497223 26497382 -115774062 - MIR SINE MIR -19 243 64 21 57 0 0 chr9 26498111 26498146 -115773298 + AT_rich Low_complexity Low_complexity 1 35 0 218 327 0 0 chr9 26499264 26499319 -115772125 + MIR SINE MIR 40 94 -114 1376 306 63 39 chr9 26500037 26500677 -115770767 + L2 LINE L2 2035 2690 -624 685 278 64 0 chr9 26500677 26500850 -115770594 - MER5A DNA MER1_type -2 187 4 450 299 162 0 chr9 26500869 26501023 -115770421 + MER5A DNA MER1_type 9 187 -2 853 288 65 64 chr9 26501068 26501686 -115769758 + L2 LINE L2 2695 3313 0 929 179 0 12 chr9 26502946 26503108 -115768336 + FRAM SINE Alu 6 165 -11 296 339 0 27 chr9 26503747 26503859 -115767585 + MIR3 SINE MIR 88 196 -12 5953 101 21 2 chr9 26504088 26505743 -115765701 + L1PA14 LINE L1 4469 6159 -2 5269 186 68 17 chr9 26507524 26509654 -115761790 - L1MA9 LINE L1 -5 6307 4061 3432 221 50 14 chr9 26509651 26510627 -115760817 - L1MA9 LINE L1 -2315 3831 2821 * 249 117 83 17 chr9 26510636 26510696 -115760748 - L1PA8 LINE L1 0 6172 6109 * 16238 136 76 14 chr9 26510683 26513482 -115757962 - L1PA10 LINE L1 -80 6403 3304 1753 152 56 0 chr9 26513482 26513752 -115757692 - AluSg SINE Alu -23 287 3 16238 136 76 14 chr9 26513752 26514743 -115756701 - L1PA10 LINE L1 -3179 3304 2376 * 41239 59 6 7 chr9 26514738 26520899 -115750545 - L1PA4 LINE L1 0 6155 1 4440 222 19 54 chr9 26520900 26522559 -115748885 - L1PA10 LINE L1 -4070 2391 771 2522 195 46 4 chr9 26522564 26523045 -115748399 - L1PA10 LINE L1 -5372 503 3 1918 242 45 44 chr9 26523046 26524071 -115747373 - L1M4c LINE L1 -3315 2719 1677 408 287 11 0 chr9 26524146 26524233 -115747211 - Tigger7 DNA MER2_type 0 2491 2404 1799 113 25 3 chr9 26524233 26524515 -115746929 + MER57-int LTR ERV1 4521 4808 -2729 6913 221 65 20 chr9 26524528 26526078 -115745366 + MER52A LTR ERV1 6 1755 0 601 135 95 40 chr9 26526096 26526244 -115745200 - Tigger7 DNA MER2_type -104 2387 2232 297 254 0 0 chr9 26526242 26526297 -115745147 - Tigger7 DNA MER2_type -678 55 1 * 2651 267 73 17 chr9 26526297 26527776 -115743668 - L1M4c LINE L1 -4523 1513 322 1940 309 92 10 chr9 26527782 26528487 -115742957 - L1 LINE L1 -5181 1122 360 200 94 0 31 chr9 26528498 26528530 -115742914 + (CTTTA)n Simple_repeat Simple_repeat 3 33 0 232 274 162 17 chr9 26528989 26529106 -115742338 - MIR SINE MIR -17 245 112 1669 117 17 0 chr9 26529116 26529347 -115742097 + AluSq SINE Alu 1 235 -78 222 62 0 0 chr9 26529367 26529399 -115742045 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 2501 253 167 25 chr9 26530141 26531582 -115739862 - L1M4 LINE L1 -873 5342 3697 5813 26 4 0 chr9 26531584 26532268 -115739176 + L1PA4 LINE L1 5469 6155 0 4118 271 78 35 chr9 26532293 26532414 -115739030 - L1MEc LINE L1 -3477 2738 2624 1448 221 54 20 chr9 26532414 26532767 -115738677 - MLT1A1 LTR MaLR 0 365 1 4118 271 78 35 chr9 26532767 26532911 -115738533 - L1MEc LINE L1 -3591 2624 2488 771 264 93 35 chr9 26532911 26533256 -115738188 - MLT1A1 LTR MaLR 0 365 1 4118 271 78 35 chr9 26533256 26533822 -115737622 - L1MEc LINE L1 -3727 2488 1948 2082 106 7 17 chr9 26533822 26534115 -115737329 + AluSg SINE Alu 1 290 -20 4118 271 78 35 chr9 26534115 26535684 -115735760 - L1MEc LINE L1 -4267 1948 254 1757 203 6 103 chr9 26535684 26536191 -115735253 - LTR22A LTR ERVK 0 458 1 4118 271 78 35 chr9 26536191 26536425 -115735019 - L1MEc LINE L1 -5961 254 31 3129 209 34 17 chr9 26536577 26537334 -115734110 - L1MB8 LINE L1 0 6178 5409 392 263 101 86 chr9 26537608 26537817 -115733627 + MER58C DNA MER1_type 2 213 -2 41326 61 3 7 chr9 26538836 26545016 -115726428 - L1PA4 LINE L1 -3 6152 1 1949 146 7 7 chr9 26545019 26545320 -115726124 - AluSx SINE Alu -11 301 1 2280 102 3 0 chr9 26546457 26546779 -115724665 - AluSx SINE Alu 0 323 1 435 257 14 36 chr9 26547345 26547485 -115723959 + L2 LINE L2 2651 2787 -527 503 285 119 22 chr9 26547495 26547814 -115723630 - MLT1I LTR MaLR 0 409 60 578 329 126 4 chr9 26547866 26548097 -115723347 + L2 LINE L2 2812 3070 -243 290 164 73 0 chr9 26548111 26548166 -115723278 - MER58 DNA MER1_type -122 219 161 385 287 28 19 chr9 26548239 26548347 -115723097 + L2 LINE L2 3193 3301 -12 360 320 116 7 chr9 26548452 26548599 -115722845 - MIR SINE MIR -19 243 81 462 227 296 0 chr9 26548824 26548956 -115722488 - MER5B DNA MER1_type -5 173 3 2921 100 37 2 chr9 26550997 26551426 -115720018 - MLT2A1 LTR ERVL 0 444 1 792 285 72 49 chr9 26551558 26551905 -115719539 + LTR33 LTR ERVL 1 355 -166 336 170 0 0 chr9 26551904 26551957 -115719487 - Alu SINE Alu -249 53 1 * 1456 195 18 28 chr9 26552218 26552500 -115718944 + AluJo SINE Alu 1 279 -33 2691 58 17 0 chr9 26552500 26552845 -115718599 + L1PA7 LINE L1 5804 6154 0 288 0 0 0 chr9 26552944 26552976 -115718468 + (CA)n Simple_repeat Simple_repeat 2 33 0 214 178 0 0 chr9 26553644 26553689 -115717755 + T-rich Low_complexity Low_complexity 1 45 0 2155 100 10 3 chr9 26554480 26554790 -115716654 - AluSq SINE Alu -1 312 1 742 217 11 5 chr9 26554880 26555064 -115716380 - L1MB2 LINE L1 0 6171 5987 2169 113 0 0 chr9 26555390 26555692 -115715752 - AluSc SINE Alu -7 302 1 213 184 20 20 chr9 26555812 26555861 -115715583 + (CATATA)n Simple_repeat Simple_repeat 2 50 0 316 278 0 46 chr9 26556043 26556151 -115715293 + MIR SINE MIR 159 261 -1 821 214 10 36 chr9 26557118 26557310 -115714134 - MER5A DNA MER1_type -1 188 2 397 206 0 0 chr9 26557675 26557748 -115713696 + MER6 DNA MER2_type 143 215 -390 23 86 0 0 chr9 26558104 26558162 -115713282 + AT_rich Low_complexity Low_complexity 1 58 0 21 57 0 0 chr9 26559300 26559335 -115712109 + AT_rich Low_complexity Low_complexity 1 35 0 353 333 81 24 chr9 26559930 26560140 -115711304 - LTR16A LTR ERVL -6 444 223 538 285 113 0 chr9 26560149 26560335 -115711109 - HERV16 LTR ERVL -3062 1934 1728 209 343 7 68 chr9 26560665 26560811 -115710633 + MIR SINE MIR 86 222 -40 2148 120 0 0 chr9 26561670 26561971 -115709473 - AluSx SINE Alu -11 301 1 2182 87 0 3 chr9 26563568 26563868 -115707576 + AluSg SINE Alu 1 299 -11 21 36 0 0 chr9 26564033 26564061 -115707383 + AT_rich Low_complexity Low_complexity 1 28 0 1279 259 141 13 chr9 26564139 26565305 -115706139 + L1MD2 LINE L1 1692 2973 -3242 341 316 14 73 chr9 26565309 26565527 -115705917 + Zaphod DNA AcHobo 55 259 -3772 588 274 75 24 chr9 26565633 26565845 -115705599 + Zaphod DNA AcHobo 438 660 -3371 260 264 13 71 chr9 26565889 26566044 -115705400 + Zaphod DNA AcHobo 1868 2013 -2018 2382 230 60 33 chr9 26566066 26566987 -115704457 + Zaphod DNA AcHobo 2454 3399 -632 437 247 184 47 chr9 26567035 26567337 -115704107 + Zaphod DNA AcHobo 3614 3976 -55 1409 177 47 13 chr9 26567337 26567654 -115703790 - L1MA9 LINE L1 -10 6302 5975 437 247 184 47 chr9 26567654 26567715 -115703729 + Zaphod DNA AcHobo 3976 4027 -4 182 266 89 13 chr9 26568397 26568476 -115702968 - L2 LINE L2 -40 3273 3189 22 35 0 0 chr9 26568672 26568701 -115702743 + AT_rich Low_complexity Low_complexity 1 29 0 389 297 48 21 chr9 26569419 26569564 -115701880 + MIR SINE MIR 114 262 0 24 53 0 0 chr9 26570357 26570395 -115701049 + AT_rich Low_complexity Low_complexity 1 38 0 189 147 0 0 chr9 26570402 26570436 -115701008 + (TCCA)n Simple_repeat Simple_repeat 3 36 0 387 60 0 0 chr9 26570461 26570511 -115700933 + (GA)n Simple_repeat Simple_repeat 2 51 0 2744 265 73 23 chr9 26571402 26572751 -115698693 + L1MD2 LINE L1 4086 5505 -730 1046 220 161 24 chr9 26572747 26573156 -115698288 + L1MD2 LINE L1 5710 6174 -254 * 5802 98 31 2 chr9 26573170 26574440 -115697004 + L1PA13 LINE L1 4846 6144 -19 227 317 117 39 chr9 26575274 26575479 -115695965 + MLT1K LTR MaLR 313 533 -55 25 0 0 0 chr9 26576701 26576726 -115694718 + AT_rich Low_complexity Low_complexity 1 25 0 32 67 0 0 chr9 26577149 26577209 -115694235 + AT_rich Low_complexity Low_complexity 1 60 0 22 70 0 0 chr9 26578043 26578086 -115693358 + AT_rich Low_complexity Low_complexity 1 43 0 4804 220 21 53 chr9 26578622 26579847 -115691597 + L1MB8 LINE L1 11 1196 -5663 2463 224 59 5 chr9 26579981 26580994 -115690450 + L1MB8 LINE L1 5658 6729 -260 * 4273 51 0 0 chr9 26580991 26581536 -115689908 - L1P LINE L1 -3677 2469 1925 730 264 34 22 chr9 26581532 26581801 -115689643 + L1MB8 LINE L1 6718 6989 0 * 394 244 101 71 chr9 26581852 26581903 -115689541 + MLT1H LTR MaLR 377 425 -124 1873 115 7 27 chr9 26581903 26582199 -115689245 + AluY SINE Alu 1 290 -21 394 244 101 71 chr9 26582199 26582315 -115689129 + MLT1H LTR MaLR 425 549 0 556 318 20 40 chr9 26582375 26582627 -115688817 - MIR SINE MIR -14 248 2 287 218 90 8 chr9 26582633 26582766 -115688678 - L1ME4a LINE L1 -196 5925 5782 21 0 0 0 chr9 26583034 26583055 -115688389 + AT_rich Low_complexity Low_complexity 1 21 0 1116 259 63 71 chr9 26583261 26583878 -115687566 - L1MC4 LINE L1 -5 8037 7426 197 378 61 0 chr9 26586020 26586102 -115685342 - L2 LINE L2 -5 3267 3181 515 232 34 4 chr9 26586526 26586742 -115684702 + LTR37A LTR ERV1 110 412 -14 1537 81 0 19 chr9 26586838 26587049 -115684395 + AluY SINE Alu 92 298 -13 571 307 50 17 chr9 26587554 26587912 -115683532 - L1ME4a LINE L1 -216 5905 5536 1149 184 19 34 chr9 26589754 26590020 -115681424 - THE1C LTR MaLR -113 262 1 5192 135 6 10 chr9 26590020 26590827 -115680617 - THE1C-int LTR MaLR 0 1580 777 484 307 78 14 chr9 26592071 26592289 -115679155 + MIR SINE MIR 17 248 -14 218 175 0 0 chr9 26592319 26592359 -115679085 + (CCA)n Simple_repeat Simple_repeat 1 40 0 475 320 34 25 chr9 26592650 26592859 -115678585 - MIR SINE MIR -17 245 36 394 71 0 0 chr9 26593204 26593260 -115678184 - L1PB1 LINE L1 -3 6148 6093 371 97 16 0 chr9 26593335 26593397 -115678047 - L1PB1 LINE L1 -6 6145 6083 2530 86 11 0 chr9 26593471 26593822 -115677622 - L1PB1 LINE L1 -6 6145 5791 309 77 0 0 chr9 26593822 26593861 -115677583 + (TG)n Simple_repeat Simple_repeat 1 39 0 523 229 29 0 chr9 26593861 26594036 -115677408 + (TA)n Simple_repeat Simple_repeat 1 180 0 473 218 41 0 chr9 26594050 26594220 -115677224 + (TA)n Simple_repeat Simple_repeat 2 178 0 3487 167 15 7 chr9 26594229 26594240 -115677204 - L1PB1 LINE L1 -360 5791 5782 180 0 0 0 chr9 26594240 26594260 -115677184 + (CA)n Simple_repeat Simple_repeat 2 21 0 3487 167 15 7 chr9 26594260 26595280 -115676164 - L1PB1 LINE L1 -369 5782 4753 342 353 35 17 chr9 26597148 26597321 -115674123 - MIR3 SINE MIR -1 207 32 225 83 0 0 chr9 26599304 26599340 -115672104 + (CA)n Simple_repeat Simple_repeat 2 37 0 1133 245 116 48 chr9 26599625 26599864 -115671580 + Charlie2 DNA MER1_type 2061 2282 -580 2608 33 0 0 chr9 26599864 26600166 -115671278 + AluY SINE Alu 1 302 -9 1133 245 116 48 chr9 26600166 26600676 -115670768 + Charlie2 DNA MER1_type 2282 2861 -1 772 264 82 58 chr9 26600864 26600971 -115670473 + LTR16A LTR ERVL 113 216 -234 2032 125 63 34 chr9 26600971 26601322 -115670122 + THE1B LTR MaLR 1 361 -3 772 264 82 58 chr9 26601322 26601544 -115669900 + LTR16A LTR ERVL 216 450 0 381 276 12 0 chr9 26603136 26603234 -115668210 + MIR SINE MIR 50 147 -62 449 362 122 19 chr9 26603267 26603684 -115667760 - L2 LINE L2 -18 3295 2836 1194 244 95 65 chr9 26604315 26604352 -115667092 - LTR40a LTR ERVL 0 519 485 1483 234 42 18 chr9 26604352 26604733 -115666711 + MLT1B LTR MaLR 1 390 0 1194 244 95 65 chr9 26604733 26604754 -115666690 - LTR40a LTR ERVL -34 485 466 5350 67 56 7 chr9 26604754 26605484 -115665960 + MER4E LTR ERV1 1 766 0 1194 244 95 65 chr9 26605484 26605928 -115665516 - LTR40a LTR ERVL -53 466 1 21 57 0 0 chr9 26606073 26606108 -115665336 + AT_rich Low_complexity Low_complexity 1 35 0 2187 175 204 88 chr9 26606384 26607192 -115664252 - LTR28 LTR ERV1 0 1020 92 2188 109 0 3 chr9 26607192 26607494 -115663950 + AluSg1 SINE Alu 1 301 -8 2187 175 204 88 chr9 26607494 26607599 -115663845 - LTR28 LTR ERV1 -928 92 1 754 246 41 0 chr9 26608663 26608834 -115662610 + MER45A DNA AcHobo 1 178 0 30 89 0 0 chr9 26609064 26609143 -115662301 + AT_rich Low_complexity Low_complexity 1 79 0 24 32 0 0 chr9 26612033 26612064 -115659380 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr9 26612901 26612929 -115658515 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr9 26612993 26613023 -115658421 + AT_rich Low_complexity Low_complexity 1 30 0 2014 152 97 66 chr9 26613871 26614357 -115657087 + LTR1 LTR ERV1 28 528 -257 4512 139 113 92 chr9 26614357 26615910 -115655534 + pTR5 LTR ERV1 746 2438 0 1562 146 43 4 chr9 26615913 26616167 -115655277 + LTR1 LTR ERV1 522 785 0 320 353 90 16 chr9 26616646 26616890 -115654554 - MIR SINE MIR 0 262 1 568 223 82 35 chr9 26618045 26618301 -115653143 - LTR37B LTR ERV1 -4 464 197 27 29 0 0 chr9 26618390 26618424 -115653020 + AT_rich Low_complexity Low_complexity 1 34 0 319 221 121 34 chr9 26618424 26618573 -115652871 - LTR37B LTR ERV1 -306 162 1 21 0 0 0 chr9 26618761 26618782 -115652662 + AT_rich Low_complexity Low_complexity 1 21 0 861 78 0 0 chr9 26620201 26620317 -115651127 + L1PA8 LINE L1 5800 5915 -257 2483 96 11 8 chr9 26620605 26620971 -115650473 + L1PA8 LINE L1 5800 6166 -6 189 0 0 0 chr9 26621577 26621598 -115649846 + (T)n Simple_repeat Simple_repeat 1 21 0 340 248 0 13 chr9 26622366 26622490 -115648954 - L1MCa LINE L1 -1339 6983 1995 28 29 0 0 chr9 26622619 26622654 -115648790 + AT_rich Low_complexity Low_complexity 1 35 0 246 310 112 36 chr9 26622664 26623022 -115648422 - L1MC/D LINE L1 -1893 5915 5531 30 0 0 0 chr9 26623209 26623239 -115648205 + AT_rich Low_complexity Low_complexity 1 30 0 253 352 0 0 chr9 26623449 26623540 -115647904 - MLT1K LTR MaLR -149 439 349 2013 130 33 3 chr9 26624256 26624556 -115646888 - THE1B LTR MaLR 0 364 56 2077 33 4 0 chr9 26624660 26624905 -115646539 - AluY SINE Alu -64 247 2 212 238 0 12 chr9 26625191 26625271 -115646173 + (TA)n Simple_repeat Simple_repeat 2 80 0 285 280 85 8 chr9 26625743 26625861 -115645583 - MER103 DNA DNA 0 166 40 21 0 0 0 chr9 26626026 26626047 -115645397 + AT_rich Low_complexity Low_complexity 1 21 0 4529 130 22 12 chr9 26626200 26626964 -115644480 - L1MA2 LINE L1 0 6304 5533 316 378 70 31 chr9 26627104 26627591 -115643853 - L2 LINE L2 -626 2688 2183 33 43 0 0 chr9 26627591 26627638 -115643806 + AT_rich Low_complexity Low_complexity 1 47 0 432 284 0 22 chr9 26627886 26628020 -115643424 + L2 LINE L2 1525 1655 -1659 1014 235 96 122 chr9 26628075 26628492 -115642952 + MLT2E LTR ERVL 79 484 -144 2597 299 98 34 chr9 26628621 26629961 -115641483 + L2 LINE L2 1888 3293 -20 2023 109 10 7 chr9 26630979 26631273 -115640171 - AluSx SINE Alu -13 299 5 931 70 20 107 chr9 26631578 26631698 -115639746 - L1P4 LINE L1 -733 5432 5336 2248 110 3 0 chr9 26631698 26631999 -115639445 - AluSp SINE Alu -11 302 1 931 70 20 107 chr9 26631999 26632100 -115639344 - L1P4 LINE L1 -829 5336 5228 699 145 78 56 chr9 26632096 26632275 -115639169 + L1 LINE L1 4013 4195 -1951 * 3561 181 31 40 chr9 26632266 26633077 -115638367 + L1P LINE L1 4416 5219 -927 318 214 0 36 chr9 26633073 26633157 -115638287 + HAL1 LINE L1 2427 2507 0 * 1196 153 8 63 chr9 26633384 26633639 -115637805 - MER57A LTR ERV1 -2 401 161 1860 45 0 0 chr9 26633971 26634192 -115637252 - AluY SINE Alu -7 304 84 840 280 63 11 chr9 26634209 26634687 -115636757 - L1M4 LINE L1 -2500 3646 3144 318 288 74 80 chr9 26635075 26635238 -115636206 - MIR SINE MIR -72 190 29 1363 237 164 15 chr9 26635285 26635816 -115635628 - L1ME3A LINE L1 0 6170 5561 263 358 91 17 chr9 26636325 26636557 -115634887 + MIR SINE MIR 8 256 -6 27 100 0 0 chr9 26636586 26636676 -115634768 + AT_rich Low_complexity Low_complexity 1 90 0 337 280 97 0 chr9 26636880 26636973 -115634471 + MIR SINE MIR 63 164 -98 989 243 5 0 chr9 26638302 26638512 -115632932 - AluJo SINE Alu -101 211 1 611 343 86 25 chr9 26638721 26639048 -115632396 + LTR16C LTR ERVL 91 437 -54 22 70 0 0 chr9 26639123 26639166 -115632278 + AT_rich Low_complexity Low_complexity 1 43 0 1626 181 91 6 chr9 26639644 26639977 -115631467 - MLT1A1 LTR MaLR -5 360 3 330 286 208 25 chr9 26640163 26640404 -115631040 + L1M4 LINE L1 4347 4631 -1515 1650 145 0 4 chr9 26740430 26740672 -115530772 + AluSg SINE Alu 55 295 -15 26 30 0 0 chr9 26740797 26740830 -115530614 + AT_rich Low_complexity Low_complexity 1 33 0 336 354 77 48 chr9 26741363 26741739 -115529705 - L2 LINE L2 -3 3310 2924 328 227 39 31 chr9 26741878 26742006 -115529438 - L1MCa LINE L1 -4355 2071 1943 24 67 0 0 chr9 26742200 26742245 -115529199 + AT_rich Low_complexity Low_complexity 1 45 0 1857 133 14 0 chr9 26742648 26742956 -115528488 + AluSx SINE Alu 1 312 0 315 0 0 0 chr9 26742959 26742994 -115528450 + (CA)n Simple_repeat Simple_repeat 2 36 0 2259 155 32 32 chr9 26742995 26743427 -115528017 - Tigger2a DNA MER2_type -1 433 2 197 311 0 0 chr9 26744103 26744164 -115527280 + L2 LINE L2 2205 2265 -1049 8058 112 40 17 chr9 26744166 26745421 -115526023 + HSMAR1 DNA Mariner 4 1287 0 5087 131 20 25 chr9 26746068 26747420 -115524024 - L1PB2 LINE L1 0 6151 4796 1003 225 78 30 chr9 26749855 26750223 -115521221 + MSTC LTR MaLR 3 428 0 219 204 0 20 chr9 26750683 26750732 -115520712 + (TA)n Simple_repeat Simple_repeat 1 48 0 1432 181 15 0 chr9 26752117 26752387 -115519057 - L1MC1 LINE L1 -2 6331 6058 1961 171 19 5 chr9 26752483 26752857 -115518587 - L1MC1 LINE L1 -310 6023 5645 1525 201 28 12 chr9 26752962 26753281 -115518163 + MER44D DNA MER2_type 13 606 -3 2190 129 0 3 chr9 26753523 26753833 -115517611 - AluSx SINE Alu -1 311 3 180 125 0 0 chr9 26753958 26753990 -115517454 + (TA)n Simple_repeat Simple_repeat 2 33 0 321 363 52 15 chr9 26754939 26755074 -115516370 - L2 LINE L2 0 3272 3133 183 80 0 0 chr9 26755087 26755112 -115516332 + (TG)n Simple_repeat Simple_repeat 2 26 0 331 238 50 40 chr9 26755565 26755666 -115515778 + MIR SINE MIR 97 198 -64 22 70 0 0 chr9 26757852 26757895 -115513549 + AT_rich Low_complexity Low_complexity 1 43 0 1543 163 13 64 chr9 26757980 26758293 -115513151 - AluJb SINE Alu -7 305 9 2495 46 10 0 chr9 26758572 26758874 -115512570 + AluY SINE Alu 1 305 -6 283 267 38 9 chr9 26758990 26759095 -115512349 + LTR37B LTR ERV1 2 109 -359 232 89 22 22 chr9 26759328 26759373 -115512071 + (TAGA)n Simple_repeat Simple_repeat 4 48 0 400 282 8 17 chr9 26759581 26759698 -115511746 + MER69 DNA AcHobo 1 116 -2410 444 191 0 0 chr9 26759698 26759792 -115511652 + (TA)n Simple_repeat Simple_repeat 2 95 0 1652 160 24 17 chr9 26759875 26760163 -115511281 - AluJo SINE Alu -11 301 12 1084 304 87 24 chr9 26760208 26760758 -115510686 + MER69 DNA AcHobo 240 824 -402 811 271 50 14 chr9 26760780 26761138 -115510306 + MER69 DNA AcHobo 1863 2233 -293 2527 261 86 31 chr9 26761167 26762866 -115508578 + L1MC/D LINE L1 1753 3498 -2717 1727 223 41 7 chr9 26762863 26763649 -115507795 + L1MC/D LINE L1 4899 5708 -743 * 1150 279 65 20 chr9 26763654 26763995 -115507449 + ERVL LTR ERVL 1419 1774 -3990 1425 175 35 132 chr9 26764010 26764404 -115507040 + MLT1B LTR MaLR 35 390 0 2821 201 130 100 chr9 26764404 26764894 -115506550 + L1MC3 LINE L1 6614 7088 -697 237 326 12 0 chr9 26764894 26764980 -115506464 + MLT1F1 LTR MaLR 45 131 -436 2821 201 130 100 chr9 26764980 26765533 -115505911 + L1MC3 LINE L1 7088 7776 -9 26 0 0 0 chr9 26765601 26765627 -115505817 + AT_rich Low_complexity Low_complexity 1 26 0 406 256 0 0 chr9 26765638 26765724 -115505720 - MLT1C-int LTR MaLR -625 746 661 2471 216 22 51 chr9 26765787 26766458 -115504986 - MLT1C-int LTR MaLR -716 655 4 542 300 97 4 chr9 26766459 26766686 -115504758 - MLT1C LTR MaLR -4 463 216 200 206 55 68 chr9 26766978 26767051 -115504393 + MIR SINE MIR 122 193 -69 188 300 0 0 chr9 26769415 26769465 -115501979 + MER5A DNA MER1_type 63 112 -77 400 275 0 0 chr9 26769569 26769660 -115501784 + L1MC5 LINE L1 7823 7913 -48 711 216 67 36 chr9 26769699 26769893 -115501551 + MER20 DNA MER1_type 20 219 0 415 226 155 32 chr9 26770091 26770246 -115501198 + MER45A DNA AcHobo 5 178 0 363 269 167 54 chr9 26772017 26772352 -115499092 + L1ME4a LINE L1 5525 5897 -224 429 20 0 0 chr9 26772355 26772405 -115499039 + (CA)n Simple_repeat Simple_repeat 2 51 0 247 368 8 24 chr9 26772651 26772776 -115498668 - MLT2E LTR ERVL -474 154 32 1451 163 8 4 chr9 26772920 26773165 -115498279 + AluJb SINE Alu 67 312 0 392 298 8 8 chr9 26774034 26774165 -115497279 + MIR3 SINE MIR 78 208 0 34 65 0 0 chr9 26775846 26775908 -115495536 + AT_rich Low_complexity Low_complexity 1 62 0 327 104 0 0 chr9 26776162 26776210 -115495234 + (TTCC)n Simple_repeat Simple_repeat 3 50 0 1730 169 0 16 chr9 26776216 26776523 -115494921 - AluJo SINE Alu 0 312 11 216 135 0 0 chr9 26776883 26776920 -115494524 + (TC)n Simple_repeat Simple_repeat 1 37 0 26 19 0 58 chr9 26780045 26780097 -115491347 + AT_rich Low_complexity Low_complexity 1 49 0 24 0 0 0 chr9 26780493 26780517 -115490927 + AT_rich Low_complexity Low_complexity 1 24 0 197 178 22 0 chr9 26780857 26780902 -115490542 + CT-rich Low_complexity Low_complexity 3 48 0 24 85 0 0 chr9 26781065 26781124 -115490320 + AT_rich Low_complexity Low_complexity 1 59 0 1508 251 209 22 chr9 26781786 26782337 -115489107 - MLT1E1 LTR MaLR 0 654 1 34 0 0 0 chr9 26782379 26782413 -115489031 + AT_rich Low_complexity Low_complexity 1 34 0 517 284 14 0 chr9 26782528 26782669 -115488775 - MIR SINE MIR -24 238 96 22 0 0 0 chr9 26782708 26782730 -115488714 + AT_rich Low_complexity Low_complexity 1 22 0 594 274 95 12 chr9 26782873 26783158 -115488286 + L1MC4a LINE L1 5292 5606 -515 612 209 38 43 chr9 26783172 26783382 -115488062 + L1MD2 LINE L1 4747 4955 -1191 3162 194 64 63 chr9 26783388 26784258 -115487186 + L1MD2 LINE L1 5487 6357 -2 331 281 99 28 chr9 26784265 26784518 -115486926 + L1MC4a LINE L1 5612 5882 -1926 852 316 93 23 chr9 26784672 26785102 -115486342 + LTR16B LTR ERVL 3 462 -2 816 242 146 39 chr9 26785633 26785963 -115485481 + MLT1A1 LTR MaLR 1 365 0 234 365 24 2 chr9 26786467 26786619 -115484825 - MIR SINE MIR -36 172 15 187 279 33 33 chr9 26786669 26786730 -115484714 - L2 LINE L2 -1 3271 3211 24 32 0 0 chr9 26786846 26786877 -115484567 + AT_rich Low_complexity Low_complexity 1 31 0 440 236 55 18 chr9 26787252 26787362 -115484082 + L2 LINE L2 3200 3313 0 370 204 19 0 chr9 26787529 26787632 -115483812 + (TA)n Simple_repeat Simple_repeat 1 105 0 180 330 82 52 chr9 26787976 26788073 -115483371 + MIR3 SINE MIR 1 100 -108 2584 24 0 0 chr9 26788682 26788976 -115482468 - AluY SINE Alu -17 294 1 250 93 23 23 chr9 26789009 26789052 -115482392 - MLT2B3 LTR ERVL -3 551 509 213 156 0 22 chr9 26789052 26789097 -115482347 + (TAGA)n Simple_repeat Simple_repeat 3 46 0 2580 211 34 8 chr9 26789099 26789623 -115481821 - MLT2B3 LTR ERVL -19 508 1 22 0 0 0 chr9 26791091 26791113 -115480331 + AT_rich Low_complexity Low_complexity 1 22 0 3935 195 10 16 chr9 26791236 26792260 -115479184 - L1P5 LINE L1 -700 5451 4440 31 26 0 0 chr9 26792280 26792318 -115479126 + AT_rich Low_complexity Low_complexity 1 38 0 332 318 11 45 chr9 26792544 26792723 -115478721 + GA-rich Low_complexity Low_complexity 5 177 0 225 0 0 0 chr9 26793008 26793033 -115478411 + (TTTTA)n Simple_repeat Simple_repeat 4 28 0 7016 31 1 0 chr9 26793033 26793865 -115477579 - L1PA3 LINE L1 -10 6145 5313 12234 25 2 0 chr9 26793865 26795326 -115476118 + L1PA3 LINE L1 3847 5310 -836 514 282 100 6 chr9 26795326 26795496 -115475948 + MER5A DNA MER1_type 4 189 0 1125 224 133 23 chr9 26795609 26796001 -115475443 - MER63B DNA MER1_type -1 435 1 1784 252 72 74 chr9 26797184 26797581 -115473863 + L1ME3A LINE L1 4958 5354 -816 1332 205 89 0 chr9 26797581 26797839 -115473605 + AluJo SINE Alu 1 281 -31 1784 252 72 74 chr9 26797839 26798633 -115472811 + L1ME3A LINE L1 5354 6165 -5 253 298 33 25 chr9 26799052 26799173 -115472271 - MLT1L LTR MaLR -450 165 44 236 258 194 16 chr9 26799386 26799510 -115471934 - MIR SINE MIR -38 224 79 626 259 15 71 chr9 26799559 26799756 -115471688 - MER58A DNA MER1_type 0 224 39 505 229 82 12 chr9 26799760 26799930 -115471514 + L1MC4 LINE L1 7481 7662 -380 2024 217 89 6 chr9 26800483 26800957 -115470487 + MER67D LTR ERV1 1 513 -1 293 348 141 7 chr9 26801711 26801846 -115469598 + MER91A DNA MER1_type 22 174 -22 294 325 45 6 chr9 26802970 26803127 -115468317 - MIR SINE MIR 0 262 100 216 0 0 0 chr9 26803492 26803516 -115467928 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1982 120 0 7 chr9 26803979 26804262 -115467182 + AluSx SINE Alu 1 281 -31 233 0 62 0 chr9 26804265 26804297 -115467147 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 1314 147 17 37 chr9 26804389 26804844 -115466600 - LTR54 LTR ERV1 -5 505 1 2676 152 47 12 chr9 26805150 26805490 -115465954 - MER84 LTR ERV1 -3 504 140 258 81 0 0 chr9 26805490 26805527 -115465917 + (TA)n Simple_repeat Simple_repeat 2 38 0 2676 152 47 12 chr9 26805527 26805673 -115465771 - MER84 LTR ERV1 -367 140 1 195 414 11 0 chr9 26805720 26805807 -115465637 + L2 LINE L2 2966 3053 -219 215 283 67 0 chr9 26805914 26805974 -115465470 - L2 LINE L2 -50 3263 3200 290 115 19 0 chr9 26806002 26806054 -115465390 + (CA)n Simple_repeat Simple_repeat 2 54 0 2531 175 130 16 chr9 26806055 26806608 -115464836 + LTR51 LTR ERV1 3 618 -53 1390 158 38 19 chr9 26806661 26806926 -115464518 + LTR23 LTR ERV1 167 436 -1 2744 171 21 6 chr9 26807037 26807510 -115463934 + MER66B LTR ERV1 7 486 0 323 274 0 0 chr9 26808312 26808385 -115463059 + LTR67 LTR ERVL 406 478 -79 410 225 60 18 chr9 26808414 26808572 -115462872 - MIR SINE MIR -62 146 30 186 43 0 0 chr9 26808777 26808800 -115462644 + (TAGA)n Simple_repeat Simple_repeat 4 26 0 24 85 0 0 chr9 26808918 26808977 -115462467 + AT_rich Low_complexity Low_complexity 1 59 0 199 357 0 0 chr9 26809151 26809221 -115462223 - L3 LINE CR1 -191 1386 1317 1321 267 50 2 chr9 26810871 26811290 -115460154 + L1ME3A LINE L1 5497 5935 -235 193 259 17 35 chr9 26812439 26812497 -115458947 - MIR SINE MIR -60 148 92 1822 153 14 17 chr9 26814004 26814298 -115457146 + AluSx SINE Alu 3 295 -17 278 340 0 30 chr9 26814809 26814909 -115456535 - MIR SINE MIR -115 147 51 3553 123 65 125 chr9 26815160 26815813 -115455631 - LTR1 LTR ERV1 0 785 191 2306 86 3 0 chr9 26815813 26816105 -115455339 - AluSc SINE Alu -16 293 1 3553 123 65 125 chr9 26816105 26816286 -115455158 - LTR1 LTR ERV1 -594 191 1 205 314 118 20 chr9 26816400 26816502 -115454942 + L2 LINE L2 2221 2332 -982 289 233 34 40 chr9 26816889 26816903 -115454541 + (TA)n Simple_repeat Simple_repeat 1 14 -494 2139 126 0 0 chr9 26816903 26817197 -115454247 - AluSx SINE Alu -18 294 1 289 233 34 40 chr9 26817197 26817400 -115454044 + (TA)n Simple_repeat Simple_repeat 14 508 0 1022 167 86 0 chr9 26817409 26817595 -115453849 + MER2 DNA MER2_type 2 203 -142 180 231 0 0 chr9 26817895 26817934 -115453510 + L2 LINE L2 3271 3309 -4 186 357 121 6 chr9 26818145 26818302 -115453142 + MIR SINE MIR 77 251 -11 29869 116 21 59 chr9 26818500 26819161 -115452283 - L1PA7 LINE L1 -13 6141 5456 2266 77 0 20 chr9 26819161 26819460 -115451984 - AluY SINE Alu -18 293 1 29869 116 21 59 chr9 26819460 26825189 -115446255 - L1PA7 LINE L1 -698 5456 12 198 0 0 0 chr9 26825227 26825249 -115446195 + (ATTG)n Simple_repeat Simple_repeat 1 22 0 1649 132 21 4 chr9 26825249 26825492 -115445952 - AluSx SINE Alu -29 283 37 186 403 16 16 chr9 26825780 26825909 -115445535 + MIR3 SINE MIR 28 156 -52 23 33 0 0 chr9 26825922 26825952 -115445492 + AT_rich Low_complexity Low_complexity 1 30 0 253 272 206 46 chr9 26826056 26826494 -115444950 + L1ME4a LINE L1 5522 6029 -92 200 321 47 65 chr9 26826597 26826812 -115444632 + L3 LINE CR1 1355 1565 -12 324 262 47 19 chr9 26827046 26827153 -115444291 - MIR SINE MIR -78 184 75 21 57 0 0 chr9 26827500 26827535 -115443909 + AT_rich Low_complexity Low_complexity 1 35 0 181 375 0 0 chr9 26827703 26827759 -115443685 + MIR SINE MIR 59 114 -148 22 35 0 0 chr9 26828068 26828097 -115443347 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr9 26828947 26828969 -115442475 + AT_rich Low_complexity Low_complexity 1 22 0 1635 70 0 0 chr9 26829254 26829467 -115441977 + L1PA4 LINE L1 5932 6144 -11 27 29 0 0 chr9 26829473 26829507 -115441937 + AT_rich Low_complexity Low_complexity 1 34 0 300 313 129 0 chr9 26830041 26830188 -115441256 - MER5B DNA MER1_type -6 172 7 376 263 30 0 chr9 26832310 26832409 -115439035 - MER94 DNA DNA -32 102 1 25 0 0 0 chr9 26833146 26833171 -115438273 + AT_rich Low_complexity Low_complexity 1 25 0 393 39 0 0 chr9 26833393 26833444 -115438000 + (CA)n Simple_repeat Simple_repeat 1 51 0 1201 236 20 55 chr9 26833716 26834060 -115437384 + MLT2B1 LTR ERVL 3 334 -186 571 322 78 41 chr9 26834173 26834518 -115436926 - LTR16C LTR ERVL -49 442 85 711 270 43 9 chr9 26834988 26835199 -115436245 + L1MC1 LINE L1 254 471 -6136 3925 194 45 15 chr9 26835216 26837261 -115434183 + L1MC1 LINE L1 826 3025 -3401 2389 195 9 60 chr9 26837306 26838296 -115433148 + L1MC1 LINE L1 4948 5874 -739 330 169 0 0 chr9 26838298 26838363 -115433081 + (CATATA)n Simple_repeat Simple_repeat 2 66 0 3369 186 6 27 chr9 26838365 26839098 -115432346 + L1MC1 LINE L1 5892 6608 -5 5657 207 24 7 chr9 26839106 26840845 -115430599 + L1MB1 LINE L1 4011 5720 -448 264 59 0 0 chr9 26840845 26840879 -115430565 + (TG)n Simple_repeat Simple_repeat 2 35 0 5657 207 24 7 chr9 26840879 26840891 -115430553 + L1MB1 LINE L1 5720 5730 -438 432 55 0 0 chr9 26840891 26840946 -115430498 + (CA)n Simple_repeat Simple_repeat 2 56 0 5657 207 24 7 chr9 26840946 26841311 -115430133 + L1MB1 LINE L1 5730 6167 -1 183 80 0 0 chr9 26842765 26842790 -115428654 + (TG)n Simple_repeat Simple_repeat 2 26 0 234 0 0 0 chr9 26842803 26842829 -115428615 + (TTG)n Simple_repeat Simple_repeat 2 27 0 7081 11 0 1 chr9 26843481 26844331 -115427113 + L1PA2 LINE L1 5339 6187 0 31 82 0 0 chr9 26844403 26844476 -115426968 + AT_rich Low_complexity Low_complexity 1 73 0 22 0 0 0 chr9 26844664 26844686 -115426758 + AT_rich Low_complexity Low_complexity 1 22 0 277 276 101 4 chr9 26844748 26845016 -115426428 + L1ME3A LINE L1 4317 4610 -1536 400 293 50 38 chr9 26845138 26845377 -115426067 + L1ME3A LINE L1 4772 5013 -1133 1830 201 75 2 chr9 26845379 26845778 -115425666 + MSTA LTR MaLR 1 428 0 236 294 94 69 chr9 26846139 26846299 -115425145 - MER103 DNA DNA -1 165 2 234 261 0 0 chr9 26847397 26847466 -115423978 + (TA)n Simple_repeat Simple_repeat 2 70 0 246 62 0 0 chr9 26847581 26847613 -115423831 + (TTCA)n Simple_repeat Simple_repeat 3 34 0 1989 138 0 0 chr9 26847613 26847896 -115423548 - AluSx SINE Alu -29 283 1 209 294 52 58 chr9 26848020 26848175 -115423269 - MIR SINE MIR -46 216 64 311 311 56 80 chr9 26848416 26848667 -115422777 - LTR16B LTR ERVL -12 452 208 337 301 54 0 chr9 26848785 26848971 -115422473 + L1ME3A LINE L1 5023 5218 -928 456 287 115 52 chr9 26849044 26849374 -115422070 + L1ME3A LINE L1 5335 5712 -458 1941 130 36 0 chr9 26849374 26849685 -115421759 - AluSx SINE Alu 0 321 1 456 287 115 52 chr9 26849685 26849875 -115421569 + L1ME3A LINE L1 5712 5889 -281 219 415 47 9 chr9 26850177 26850283 -115421161 - MIR SINE MIR -133 129 20 220 326 94 44 chr9 26850720 26850901 -115420543 - MIR SINE MIR -8 254 65 270 301 54 0 chr9 26851162 26851255 -115420189 + MIR SINE MIR 159 256 -6 29 47 0 0 chr9 26851576 26851619 -115419825 + AT_rich Low_complexity Low_complexity 1 43 0 508 68 0 0 chr9 26851625 26851698 -115419746 - L1PA5 LINE L1 -101 6053 5981 21979 64 4 0 chr9 26852265 26855145 -115416299 - L1P LINE L1 -2566 3580 690 4634 47 5 0 chr9 26855146 26855724 -115415720 + L1PA5 LINE L1 4395 4975 -1171 7292 45 0 3 chr9 26855729 26856804 -115414640 + L1PA5 LINE L1 5082 6153 -1 23 92 0 0 chr9 26856835 26856900 -115414544 + AT_rich Low_complexity Low_complexity 1 65 0 234 271 59 0 chr9 26857641 26857726 -115413718 + MIR SINE MIR 143 232 -30 868 242 78 55 chr9 26857818 26858203 -115413241 - MER66A LTR ERV1 -40 438 45 2039 179 60 3 chr9 26858635 26859021 -115412423 + MLT2C2 LTR ERVL 1 408 -56 212 226 32 0 chr9 26859031 26859093 -115412351 + (TAGA)n Simple_repeat Simple_repeat 1 64 0 180 330 102 11 chr9 26860235 26860323 -115411121 + L2 LINE L2 3218 3313 0 238 274 95 0 chr9 26861332 26861416 -115410028 - MIR3 SINE MIR -45 163 72 2257 255 98 31 chr9 26861912 26863412 -115408032 + L1ME1 LINE L1 4405 5996 -170 330 211 0 0 chr9 26865800 26865914 -115405530 + (TA)n Simple_repeat Simple_repeat 1 114 0 2014 94 0 0 chr9 26866469 26866735 -115404709 + AluSc SINE Alu 1 266 -43 581 274 98 35 chr9 26867025 26867343 -115404101 + MLT1H LTR MaLR 62 399 -150 2043 114 10 0 chr9 26867423 26867712 -115403732 - AluSg SINE Alu -18 292 1 617 354 62 24 chr9 26869450 26869789 -115401655 + L2 LINE L2 2805 3156 -157 193 291 36 0 chr9 26869945 26870000 -115401444 + L2 LINE L2 3222 3278 -35 2125 125 0 6 chr9 26870015 26870327 -115401117 + AluSq SINE Alu 2 311 -2 232 324 0 0 chr9 26870327 26870398 -115401046 + GA-rich Low_complexity Low_complexity 2 72 0 443 48 16 0 chr9 26870618 26870680 -115400764 + MADE1 DNA Mariner 18 80 0 5609 193 26 26 chr9 26870688 26872340 -115399104 + L1MC1 LINE L1 4678 6332 -1 21 0 0 0 chr9 26872439 26872460 -115398984 + AT_rich Low_complexity Low_complexity 1 21 0 310 346 123 35 chr9 26872709 26873195 -115398249 + L1ME LINE L1 541 1069 -5050 446 304 131 13 chr9 26873477 26873955 -115397489 + L1ME LINE L1 5164 5705 -440 180 77 0 0 chr9 26874288 26874314 -115397130 + (TTG)n Simple_repeat Simple_repeat 3 28 0 2112 92 0 14 chr9 26874351 26874675 -115396769 - AluY SINE Alu 0 320 1 1239 263 147 18 chr9 26874842 26875393 -115396051 + L1ME2 LINE L1 5494 6115 -49 281 333 75 65 chr9 26878714 26878915 -115392529 + MIR3 SINE MIR 1 203 -5 240 278 106 46 chr9 26881472 26881623 -115389821 + MIR SINE MIR 86 245 -17 355 225 34 0 chr9 26881704 26881770 -115389674 - MER58 DNA MER1_type -11 2409 2338 207 0 0 0 chr9 26881770 26881793 -115389651 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 355 225 34 0 chr9 26881793 26881815 -115389629 - MER58 DNA MER1_type -82 2338 2318 650 314 93 64 chr9 26882321 26882436 -115389008 - L2 LINE L2 0 3313 3203 2375 87 7 0 chr9 26882436 26882746 -115388698 + AluSp SINE Alu 1 312 -1 650 314 93 64 chr9 26882746 26883237 -115388207 - L2 LINE L2 -110 3203 2690 678 143 0 0 chr9 26883944 26884063 -115387381 - L1PA16 LINE L1 -3 6163 6045 410 49 16 0 chr9 26884113 26884174 -115387270 + (TA)n Simple_repeat Simple_repeat 1 62 0 6219 228 21 104 chr9 26884184 26885205 -115386239 - L1PA16 LINE L1 -137 6029 4925 1840 144 17 3 chr9 26885205 26885504 -115385940 + AluSx SINE Alu 1 303 -9 6219 228 21 104 chr9 26885504 26888137 -115383307 - L1PA16 LINE L1 -1241 4925 2694 460 114 0 57 chr9 26888271 26888359 -115383085 - L1PA7 LINE L1 0 6154 6072 189 254 73 0 chr9 26889178 26889233 -115382211 - MIR3 SINE MIR -52 156 98 702 127 51 0 chr9 26889506 26889624 -115381820 + AluSg/x SINE Alu 188 311 -1 189 0 0 0 chr9 26890305 26890326 -115381118 + (T)n Simple_repeat Simple_repeat 1 21 0 23 0 0 0 chr9 26892108 26892131 -115379313 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr9 26892303 26892327 -115379117 + AT_rich Low_complexity Low_complexity 1 24 0 1869 129 45 55 chr9 26893660 26894039 -115377405 - THE1C LTR MaLR 0 375 1 515 286 141 14 chr9 26896051 26896264 -115375180 - MLT1I LTR MaLR -169 240 1 229 355 43 0 chr9 26897951 26898044 -115373400 + L2 LINE L2 2955 3051 -221 262 365 0 0 chr9 26899738 26899883 -115371561 - HAL1 LINE L1 -910 1597 1453 251 264 49 62 chr9 26899955 26900099 -115371345 - L1MEd LINE L1 -4877 1242 1101 3919 222 66 15 chr9 26900399 26902416 -115369028 - L1MB7 LINE L1 -17 6167 4047 687 369 50 19 chr9 26902522 26902983 -115368461 - L1MEd LINE L1 -5366 753 279 538 259 67 10 chr9 26903226 26903419 -115368025 + MER3 DNA MER1_type 6 209 0 272 299 52 0 chr9 26904327 26904404 -115367040 + MLT1K LTR MaLR 85 165 -423 425 241 123 37 chr9 26904516 26904678 -115366766 + MLT1K LTR MaLR 386 561 -27 312 300 50 0 chr9 26905460 26905560 -115365884 - MLT1H LTR MaLR -205 344 240 265 233 0 17 chr9 26905611 26905671 -115365773 - MLT1H LTR MaLR -400 149 91 2065 175 62 40 chr9 26905769 26905836 -115365608 - L1MA4A LINE L1 -177 6126 6062 1915 157 3 3 chr9 26905836 26906142 -115365302 - AluSx SINE Alu -6 306 1 2065 175 62 40 chr9 26906142 26906555 -115364889 - L1MA4A LINE L1 -241 6062 5635 383 318 24 0 chr9 26908462 26908588 -115362856 - MIR SINE MIR -32 230 102 21 0 0 0 chr9 26908868 26908889 -115362555 + AT_rich Low_complexity Low_complexity 1 21 0 276 111 0 0 chr9 26909232 26909277 -115362167 + (TA)n Simple_repeat Simple_repeat 1 45 0 22 0 0 0 chr9 26909284 26909306 -115362138 + AT_rich Low_complexity Low_complexity 1 22 0 182 281 141 0 chr9 26911090 26911154 -115360290 - L2 LINE L2 -5 3267 3195 468 279 8 85 chr9 26911184 26911442 -115360002 - L2 LINE L2 -172 3141 2904 1517 137 105 43 chr9 26911760 26912111 -115359333 - THE1C LTR MaLR 0 375 3 1473 202 56 43 chr9 26912397 26912858 -115358586 + MLT1C LTR MaLR 1 467 0 1473 197 34 3 chr9 26914052 26914346 -115357098 - AluJo SINE Alu -9 303 1 21 0 0 0 chr9 26914558 26914579 -115356865 + AT_rich Low_complexity Low_complexity 1 21 0 1380 234 95 23 chr9 26914935 26915366 -115356078 + MLT1C LTR MaLR 6 467 0 286 224 0 66 chr9 26916548 26916624 -115354820 + MER92C LTR ERV1 1 71 -483 302 194 60 0 chr9 26916809 26916876 -115354568 + MER92C LTR ERV1 484 554 0 4805 182 33 46 chr9 26917325 26918717 -115352727 - L1MA10 LINE L1 -22 6312 4935 1256 225 121 17 chr9 26919051 26919406 -115352038 - MSTD LTR MaLR -4 392 1 31 58 0 0 chr9 26920123 26920175 -115351269 + AT_rich Low_complexity Low_complexity 1 52 0 20446 105 9 9 chr9 26920415 26921554 -115349890 - L1PA7 LINE L1 -6 6148 5010 2762 13 0 0 chr9 26921554 26921860 -115349584 - AluYb8 SINE Alu -11 307 2 20446 105 9 9 chr9 26921860 26924598 -115346846 - L1PA7 LINE L1 -1143 5011 2254 191 189 19 0 chr9 26925603 26925656 -115345788 + (CAT)n Simple_repeat Simple_repeat 1 54 0 229 282 206 30 chr9 26925747 26925878 -115345566 - MIR SINE MIR -108 154 1 25 51 0 0 chr9 26926348 26926387 -115345057 + AT_rich Low_complexity Low_complexity 1 39 0 186 43 0 0 chr9 26926426 26926449 -115344995 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 981 325 117 15 chr9 26926449 26927285 -115344159 - L2 LINE L2 -13 3300 2370 255 258 8 121 chr9 26927503 26927635 -115343809 - MIR SINE MIR -30 232 116 244 286 56 8 chr9 26928429 26928555 -115342889 - LTR67 LTR ERVL -16 541 410 1611 215 79 63 chr9 26928793 26929299 -115342145 + MER67D LTR ERV1 1 514 0 954 302 144 22 chr9 26930249 26930782 -115340662 + L2 LINE L2 1716 2313 -1001 335 145 29 36 chr9 26931967 26932105 -115339339 + (TA)n Simple_repeat Simple_repeat 1 137 0 1346 210 24 15 chr9 26932661 26932990 -115338454 + L1MB1 LINE L1 4281 4612 -1534 208 217 0 0 chr9 26934500 26934546 -115336898 + (TG)n Simple_repeat Simple_repeat 1 46 0 4613 227 80 11 chr9 26934929 26935988 -115335456 + L1PA13 LINE L1 83 1214 -5573 5448 195 29 16 chr9 26936022 26937842 -115333602 + L1PA13 LINE L1 1406 3261 -3536 323 227 0 53 chr9 26938665 26938740 -115332704 - L1 LINE L1 -2018 4128 4058 * 3985 206 41 23 chr9 26938727 26939730 -115331714 + L1MB1 LINE L1 4618 5663 -505 2183 99 3 13 chr9 26939730 26940071 -115331373 + AluSp SINE Alu 1 313 0 3985 206 41 23 chr9 26940071 26940578 -115330866 + L1MB1 LINE L1 5663 6159 -9 444 337 22 22 chr9 26940642 26940823 -115330621 + LTR16A LTR ERVL 263 443 -7 1288 315 131 27 chr9 26941972 26942629 -115328815 + L1MC3 LINE L1 1 725 -6134 2110 223 65 60 chr9 26942720 26944120 -115327324 + L1MC3 LINE L1 934 2453 -4504 1888 295 57 8 chr9 26944185 26945240 -115326204 + L1MC3 LINE L1 2776 3844 -3113 2449 227 67 28 chr9 26945539 26946927 -115324517 + L1MC3 LINE L1 5184 6633 -749 * 2744 208 49 92 chr9 26946922 26947625 -115323819 + L1MC3 LINE L1 6974 7706 -890 1370 242 46 3 chr9 26947625 26947972 -115323472 + MLT1A1 LTR MaLR 1 362 -3 369 0 0 0 chr9 26947972 26948013 -115323431 + (CA)n Simple_repeat Simple_repeat 2 42 0 363 44 0 0 chr9 26948012 26948057 -115323387 + (GA)n Simple_repeat Simple_repeat 2 46 0 2744 208 49 92 chr9 26948013 26948278 -115323166 + L1MC3 LINE L1 7704 7859 -737 309 89 0 0 chr9 26948279 26948324 -115323120 + (TG)n Simple_repeat Simple_repeat 2 46 0 2056 168 34 50 chr9 26949066 26949507 -115321937 + Tigger2a DNA MER2_type 1 434 0 243 330 36 0 chr9 26949839 26949951 -115321493 - Charlie8 DNA MER1_type -2004 413 298 330 270 9 26 chr9 26950017 26950132 -115321312 - Charlie8 DNA MER1_type -2228 189 77 235 286 18 0 chr9 26951250 26951306 -115320138 + L2 LINE L2 3208 3264 -8 543 329 43 10 chr9 26952766 26952973 -115318471 + MIR SINE MIR 47 260 -2 188 377 0 0 chr9 26954227 26954296 -115317148 + L2 LINE L2 3238 3306 -7 182 304 89 30 chr9 26954582 26954717 -115316727 - MIR SINE MIR 0 262 120 25 31 0 0 chr9 26954828 26954860 -115316584 + AT_rich Low_complexity Low_complexity 1 32 0 231 357 36 30 chr9 26956563 26956731 -115314713 - MER20B DNA MER1_type -611 172 4 206 279 15 15 chr9 26957123 26957191 -115314253 - L2 LINE L2 -1 3312 3245 20607 141 32 30 chr9 26957944 26961832 -115309612 - L1P3 LINE L1 -1501 4960 1061 1548 113 0 4 chr9 26961795 26962035 -115309409 + L1P LINE L1 3789 4027 -2119 * 6844 149 24 16 chr9 26962043 26963175 -115308269 - L1P3 LINE L1 -5315 1146 6 2465 68 0 0 chr9 26963789 26964100 -115307344 - AluY SINE Alu 0 311 1 1835 167 0 0 chr9 26964294 26964570 -115306874 - AluSg SINE Alu -29 281 6 580 365 16 4 chr9 26964995 26965239 -115306205 + MIR SINE MIR 16 262 0 23 54 0 0 chr9 26965474 26965511 -115305933 + AT_rich Low_complexity Low_complexity 1 37 0 216 345 86 35 chr9 26965986 26966102 -115305342 - L2 LINE L2 -8 3305 3184 499 339 20 16 chr9 26967662 26967907 -115303537 + L1MEc LINE L1 173 418 -5978 711 249 61 42 chr9 26968254 26968567 -115302877 + L1MB7 LINE L1 3972 4290 -1856 * 969 266 118 65 chr9 26968560 26969210 -115302234 + L1MB7 LINE L1 5490 6174 -10 414 305 32 21 chr9 26969241 26969431 -115302013 + L1ME1 LINE L1 5971 6162 -4 503 275 67 11 chr9 26969736 26969965 -115301479 + L1MEc LINE L1 1023 1343 -4862 4373 246 88 29 chr9 26970246 26972206 -115299238 + L1MA7 LINE L1 3387 5481 -743 1520 156 33 47 chr9 26972206 26972556 -115298888 + L1MA7 LINE L1 5933 6287 -4 195 100 0 0 chr9 26972647 26972677 -115298767 + (CAA)n Simple_repeat Simple_repeat 2 31 0 777 296 37 0 chr9 26972830 26973003 -115298441 - LTR16C LTR ERVL -79 412 228 1676 174 135 26 chr9 26973003 26973389 -115298055 + MSTA LTR MaLR 1 428 0 777 296 37 0 chr9 26973389 26973431 -115298013 - LTR16C LTR ERVL -263 228 189 940 306 49 43 chr9 26973505 26973953 -115297491 - L1MDb LINE L1 -5887 522 69 1985 144 123 0 chr9 26973953 26974334 -115297110 - MSTA LTR MaLR 0 428 1 940 306 49 43 chr9 26974334 26974398 -115297046 - L1MDb LINE L1 -6340 69 7 22 0 0 0 chr9 26975201 26975223 -115296221 + AT_rich Low_complexity Low_complexity 1 22 0 270 0 0 0 chr9 26975485 26975515 -115295929 + (CA)n Simple_repeat Simple_repeat 1 30 0 29 84 0 0 chr9 26975515 26975586 -115295858 + AT_rich Low_complexity Low_complexity 1 71 0 231 326 58 55 chr9 26975855 26976146 -115295298 + MLT1H LTR MaLR 118 409 -140 255 244 67 0 chr9 26976282 26976372 -115295072 - L1MC4 LINE L1 -1339 6703 6608 41506 57 7 2 chr9 26976825 26982955 -115288489 - L1PA4 LINE L1 0 6155 2 1036 264 100 11 chr9 26983072 26983649 -115287795 + L1ME1 LINE L1 5161 5788 -571 417 224 8 8 chr9 26983776 26983901 -115287543 + L1ME1 LINE L1 5785 5909 -257 190 341 101 47 chr9 26984109 26984238 -115287206 + MIR3 SINE MIR 10 145 -63 25 31 0 0 chr9 26984391 26984423 -115287021 + AT_rich Low_complexity Low_complexity 1 32 0 220 211 0 0 chr9 26984749 26984787 -115286657 + (CATATA)n Simple_repeat Simple_repeat 4 41 0 227 100 0 0 chr9 26984787 26984837 -115286607 + LTR66 LTR ERVL 398 447 -163 224 344 179 9 chr9 26986291 26986503 -115284941 + MIR SINE MIR 3 250 -12 180 152 0 0 chr9 26987609 26987642 -115283802 + (TG)n Simple_repeat Simple_repeat 2 34 0 2148 146 30 28 chr9 26988257 26988619 -115282825 - THE1B LTR MaLR -1 363 1 2409 77 0 10 chr9 26988840 26989153 -115282291 - AluY SINE Alu -1 310 1 24 53 0 0 chr9 26991392 26991430 -115280014 + AT_rich Low_complexity Low_complexity 1 38 0 199 369 45 27 chr9 26991463 26991574 -115279870 - L2 LINE L2 0 3313 3201 21 0 0 0 chr9 26991702 26991723 -115279721 + AT_rich Low_complexity Low_complexity 1 21 0 344 216 0 95 chr9 26991819 26991935 -115279509 + L1MC4 LINE L1 6604 6708 -1334 213 39 0 0 chr9 26991937 26991963 -115279481 + (TA)n Simple_repeat Simple_repeat 2 27 0 23 0 0 0 chr9 26992126 26992149 -115279295 + AT_rich Low_complexity Low_complexity 1 23 0 1984 151 5 78 chr9 26992817 26993202 -115278242 - THE1B LTR MaLR 0 364 8 22 35 0 0 chr9 26993221 26993250 -115278194 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr9 26994539 26994567 -115276877 + AT_rich Low_complexity Low_complexity 1 28 0 216 0 0 0 chr9 26994974 26994998 -115276446 + (TA)n Simple_repeat Simple_repeat 2 25 0 11739 97 8 2 chr9 26995005 26997456 -115273988 - L1PA7 LINE L1 -5 6464 4003 8009 115 9 3 chr9 26997456 26998211 -115273233 - L1PA7 LINE L1 -5285 1176 410 252 0 0 0 chr9 26998211 26998239 -115273205 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 8009 115 9 3 chr9 26998239 26998650 -115272794 - L1PA7 LINE L1 -6051 410 3 2555 233 74 64 chr9 26998846 26999533 -115271911 - L1MD2 LINE L1 -10 6349 5670 5902 88 19 25 chr9 26999533 27000941 -115270503 - L1PA13 LINE L1 0 6163 4780 378 0 0 0 chr9 27000941 27000983 -115270461 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 5902 88 19 25 chr9 27000983 27001364 -115270080 - L1PA13 LINE L1 -1383 4780 4398 2555 233 74 64 chr9 27001364 27002487 -115268957 - L1MD2 LINE L1 -689 5670 4522 1384 161 88 101 chr9 27002495 27002929 -115268515 - MSTA LTR MaLR 0 428 1 515 317 155 34 chr9 27003042 27003271 -115268173 - L1M4 LINE L1 -1300 4846 4646 2347 81 0 7 chr9 27003271 27003568 -115267876 - AluSc SINE Alu -14 295 1 515 317 155 34 chr9 27003568 27003861 -115267583 - L1M4 LINE L1 -1500 4646 4261 413 314 94 13 chr9 27004042 27004201 -115267243 - MIR SINE MIR -88 174 3 2202 36 0 0 chr9 27004857 27005106 -115266338 - AluY SINE Alu -13 298 50 438 280 168 0 chr9 27005128 27005271 -115266173 - MIR SINE MIR -68 194 28 182 307 93 0 chr9 27005807 27005882 -115265562 - MIR SINE MIR -95 113 32 523 200 9 17 chr9 27006059 27006174 -115265270 + MLT2B2 LTR ERVL 1 114 -401 302 264 36 45 chr9 27006182 27006292 -115265152 - L1MC4 LINE L1 -1339 6703 6595 562 132 41 11 chr9 27006298 27006840 -115264604 + (TA)n Simple_repeat Simple_repeat 1 558 0 607 127 28 18 chr9 27006853 27007139 -115264305 + (TA)n Simple_repeat Simple_repeat 1 289 0 241 82 82 61 chr9 27007141 27007190 -115264254 + MLT2B1 LTR ERVL 464 518 -2 23 0 0 0 chr9 27007196 27007219 -115264225 + AT_rich Low_complexity Low_complexity 1 23 0 333 359 106 20 chr9 27007293 27007641 -115263803 - L2 LINE L2 -782 2532 2155 36557 36 13 2 chr9 27007810 27013822 -115257622 - L1PA3 LINE L1 -11 6144 3 310 318 178 33 chr9 27014282 27014496 -115256948 - MIR SINE MIR -14 248 4 21 0 0 0 chr9 27014645 27014666 -115256778 + AT_rich Low_complexity Low_complexity 1 21 0 392 279 43 50 chr9 27015437 27015577 -115255867 + MIR SINE MIR 58 196 -66 1308 215 55 7 chr9 27015586 27015758 -115255686 - AluJo SINE Alu -5 307 114 569 33 43 0 chr9 27015758 27015850 -115255594 + (TA)n Simple_repeat Simple_repeat 2 97 0 1308 215 55 7 chr9 27015850 27015970 -115255474 - AluJo SINE Alu -198 114 1 342 0 0 0 chr9 27016377 27016415 -115255029 + (TA)n Simple_repeat Simple_repeat 2 39 0 3697 123 9 6 chr9 27016422 27017165 -115254279 - L1P5 LINE L1 -380 5771 5030 3740 212 11 10 chr9 27017167 27017974 -115253470 - L1 LINE L1 -1984 4162 3355 3898 188 94 18 chr9 27017974 27018984 -115252460 + L1PBa LINE L1 2683 3824 -3038 325 67 0 0 chr9 27019824 27019869 -115251575 - L1PA3 LINE L1 -5 6150 6106 1795 44 4 0 chr9 27019869 27020096 -115251348 - L1PA4 LINE L1 -124 6031 5804 268 159 0 0 chr9 27020787 27020831 -115250613 + LTR16C LTR ERVL 448 491 0 190 235 0 20 chr9 27020844 27020895 -115250549 - L2 LINE L2 -4 3268 3219 196 364 133 7 chr9 27020970 27021130 -115250314 - MIR SINE MIR -45 217 37 204 293 0 40 chr9 27022193 27022268 -115249176 + CT-rich Low_complexity Low_complexity 1 72 0 311 339 18 0 chr9 27025939 27026048 -115245396 - MIR SINE MIR -62 146 36 250 281 0 31 chr9 27026309 27026373 -115245071 + MLT2E LTR ERVL 61 122 -506 1867 223 50 72 chr9 27026902 27027481 -115243963 + MER74B LTR ERVL 55 620 -2 289 289 26 18 chr9 27028293 27028407 -115243037 + L1MC4 LINE L1 7327 7441 -601 22 0 0 0 chr9 27028423 27028445 -115242999 + AT_rich Low_complexity Low_complexity 1 22 0 952 243 106 58 chr9 27028668 27029046 -115242398 + MSTD LTR MaLR 1 396 0 333 190 0 0 chr9 27029046 27029104 -115242340 + L1MC2 LINE L1 6264 6321 -23 273 29 0 0 chr9 27029429 27029463 -115241981 + (TG)n Simple_repeat Simple_repeat 1 34 0 23 0 0 0 chr9 27029734 27029757 -115241687 + AT_rich Low_complexity Low_complexity 1 23 0 351 0 0 0 chr9 27031533 27031572 -115239872 + (TG)n Simple_repeat Simple_repeat 2 40 0 21 36 0 0 chr9 27031755 27031783 -115239661 + AT_rich Low_complexity Low_complexity 1 28 0 2326 92 0 3 chr9 27032703 27033008 -115238436 + AluSx SINE Alu 1 304 -8 409 151 0 0 chr9 27033900 27033973 -115237471 + AluS SINE Alu 1 73 -228 314 304 31 12 chr9 27034160 27034321 -115237123 + L1MC3 LINE L1 6697 6860 -925 1014 279 43 3 chr9 27034329 27034677 -115236767 + MLT1A1 LTR MaLR 1 362 -3 348 24 0 0 chr9 27034677 27034718 -115236726 + (CA)n Simple_repeat Simple_repeat 2 42 0 * 363 44 0 0 chr9 27034717 27034762 -115236682 + (GA)n Simple_repeat Simple_repeat 2 46 0 668 188 91 0 chr9 27034829 27034983 -115236461 + L1MC3 LINE L1 6881 7048 -737 309 89 0 0 chr9 27034984 27035029 -115236415 + (TG)n Simple_repeat Simple_repeat 2 46 0 399 41 0 0 chr9 27035541 27035590 -115235854 + (TCCC)n Simple_repeat Simple_repeat 4 52 0 308 157 0 0 chr9 27035746 27035797 -115235647 + MER5A DNA MER1_type 16 66 -123 369 0 0 0 chr9 27036031 27036072 -115235372 + (TTTA)n Simple_repeat Simple_repeat 4 44 0 233 233 11 0 chr9 27036734 27036824 -115234620 + (TA)n Simple_repeat Simple_repeat 1 91 0 304 283 0 30 chr9 27036824 27036923 -115234521 - L1MC4 LINE L1 -1333 6709 6614 492 198 9 0 chr9 27037046 27037152 -115234292 - L1MA10 LINE L1 -2 6332 6226 6576 74 8 4 chr9 27037638 27039152 -115232292 - L1PA8 LINE L1 -2 6170 4655 252 0 0 0 chr9 27089204 27089232 -115182212 + (TG)n Simple_repeat Simple_repeat 1 28 0 21 36 0 0 chr9 27090934 27090962 -115180482 + AT_rich Low_complexity Low_complexity 1 28 0 301 284 103 40 chr9 27091043 27091413 -115180031 + L1ME LINE L1 5267 5659 -503 276 43 128 0 chr9 27091432 27091479 -115179965 + L1MA4A LINE L1 6243 6295 -8 26 30 0 0 chr9 27091482 27091515 -115179929 + AT_rich Low_complexity Low_complexity 1 33 0 302 244 0 12 chr9 27091693 27091775 -115179669 + (TA)n Simple_repeat Simple_repeat 2 82 0 556 151 0 32 chr9 27091803 27091988 -115179456 + (TA)n Simple_repeat Simple_repeat 2 180 0 189 0 0 0 chr9 27095010 27095031 -115176413 + (T)n Simple_repeat Simple_repeat 1 21 0 22 0 0 0 chr9 27096752 27096774 -115174670 + AT_rich Low_complexity Low_complexity 1 22 0 324 327 48 18 chr9 27096985 27097153 -115174291 - MIR SINE MIR -43 219 47 308 127 18 0 chr9 27097448 27097503 -115173941 + CT-rich Low_complexity Low_complexity 1 56 0 1951 174 10 36 chr9 27097899 27098313 -115173131 - MER57A LTR ERV1 0 403 1 1294 93 205 5 chr9 27098313 27098528 -115172916 - MER57A-int LTR ERV1 0 7537 7280 687 124 31 31 chr9 27098529 27098658 -115172786 - LTR54B LTR ERV1 -367 131 3 1973 124 39 7 chr9 27098658 27098965 -115172479 - MER57A-int LTR ERV1 -391 7146 6830 1874 162 39 25 chr9 27098965 27099324 -115172120 + THE1B LTR MaLR 1 364 0 10813 121 4 1 chr9 27099324 27100898 -115170546 + THE1B-int LTR MaLR 1 1578 -2 1245 198 4 4 chr9 27100900 27101138 -115170306 + THE1B LTR MaLR 1 238 -117 428 315 56 23 chr9 27101793 27102009 -115169435 - L1MEc LINE L1 -4744 1566 1344 502 290 86 56 chr9 27102037 27102700 -115168744 - L1MEc LINE L1 -4875 1244 562 27 29 0 0 chr9 27102831 27102865 -115168579 + AT_rich Low_complexity Low_complexity 1 34 0 237 33 0 0 chr9 27102879 27102909 -115168535 + (TG)n Simple_repeat Simple_repeat 2 31 0 306 291 152 6 chr9 27103832 27103990 -115167454 - MIR SINE MIR 0 262 82 541 299 98 5 chr9 27104229 27104423 -115167021 + MIR SINE MIR 41 252 -10 2316 67 14 0 chr9 27104706 27105003 -115166441 + AluY SINE Alu 1 301 -10 1819 158 67 12 chr9 27105360 27105689 -115165755 + MER7A DNA MER2_type 2 346 0 278 265 0 15 chr9 27105964 27106032 -115165412 - MIR3 SINE MIR -31 177 111 374 226 43 43 chr9 27106518 27106633 -115164811 + MIR SINE MIR 138 252 -10 260 257 171 0 chr9 27107457 27107527 -115163917 - L2 LINE L2 -3 3310 3229 2623 10 0 0 chr9 27110228 27110522 -115160922 - AluYa5 SINE Alu -17 294 1 1900 171 93 20 chr9 27110855 27111008 -115160436 - Tigger2 DNA MER2_type 0 2718 2578 189 0 0 0 chr9 27111008 27111029 -115160415 + (TG)n Simple_repeat Simple_repeat 2 22 0 * 207 0 0 0 chr9 27111028 27111051 -115160393 + (TA)n Simple_repeat Simple_repeat 2 24 0 1900 171 93 20 chr9 27111029 27111306 -115160138 - Tigger2 DNA MER2_type -140 2578 2280 414 176 0 0 chr9 27111303 27111371 -115160073 + MER8 DNA MER2_type 170 237 -2 * 21 0 0 0 chr9 27111372 27111393 -115160051 + AT_rich Low_complexity Low_complexity 1 21 0 29 60 0 0 chr9 27111940 27111990 -115159454 + AT_rich Low_complexity Low_complexity 1 50 0 599 250 69 39 chr9 27112376 27112736 -115158708 + L1M4 LINE L1 2814 3184 -2962 3069 123 0 17 chr9 27112759 27113222 -115158222 + L1P LINE L1 1 455 -5691 341 273 35 7 chr9 27113219 27113362 -115158082 + L1M4 LINE L1 3209 3355 -2791 * 357 248 41 7 chr9 27113443 27113588 -115157856 + L1MA10 LINE L1 6182 6331 -3 342 243 136 24 chr9 27113953 27114122 -115157322 + LTR41 LTR ERVL 1 188 -585 2040 280 63 34 chr9 27114863 27115350 -115156094 - L1M4 LINE L1 -1786 4360 3888 2248 97 0 3 chr9 27115350 27115658 -115155786 + AluSx SINE Alu 1 307 -5 2040 280 63 34 chr9 27115658 27116058 -115155386 - L1M4 LINE L1 -2258 3888 3501 618 109 0 0 chr9 27116058 27116150 -115155294 + (TA)n Simple_repeat Simple_repeat 2 93 0 2040 280 63 34 chr9 27116150 27116492 -115154952 - L1M4 LINE L1 -2645 3501 2997 395 270 0 0 chr9 27118114 27118214 -115153230 + MER5A DNA MER1_type 10 109 -80 230 340 72 0 chr9 27118910 27119007 -115152437 + L2 LINE L2 3209 3312 -1 542 207 17 35 chr9 27119110 27119226 -115152218 + MER5B DNA MER1_type 64 177 -1 386 361 75 40 chr9 27119280 27119526 -115151918 + L3 LINE CR1 1134 1395 -182 1951 153 3 0 chr9 27119526 27119826 -115151618 + AluSx SINE Alu 2 302 -10 386 361 75 40 chr9 27119826 27119900 -115151544 + L3 LINE CR1 1395 1465 -112 1995 113 7 23 chr9 27120015 27120316 -115151128 + AluSx SINE Alu 1 296 -16 423 341 66 22 chr9 27120344 27120570 -115150874 - MIR SINE MIR 0 262 27 23 33 0 0 chr9 27120709 27120739 -115150705 + AT_rich Low_complexity Low_complexity 1 30 0 692 191 46 40 chr9 27120744 27120917 -115150527 + Tigger3(Golem) DNA MER2_type 102 275 -2754 180 285 133 44 chr9 27121373 27121531 -115149913 + MIR SINE MIR 81 252 -10 905 207 101 23 chr9 27122280 27122497 -115148947 + L1PB4 LINE L1 5919 6152 -4 214 333 78 0 chr9 27123524 27123614 -115147830 + MIR SINE MIR 56 152 -110 262 250 45 23 chr9 27124633 27124809 -115146635 + (TA)n Simple_repeat Simple_repeat 1 180 0 278 311 12 0 chr9 27125449 27125626 -115145818 + L1ME3A LINE L1 5296 5476 -694 1469 249 10 27 chr9 27125629 27126035 -115145409 + L1ME3A LINE L1 5655 6053 -117 191 86 0 29 chr9 27126978 27127013 -115144431 + (TA)n Simple_repeat Simple_repeat 1 34 0 28 29 0 0 chr9 27127052 27127087 -115144357 + AT_rich Low_complexity Low_complexity 1 35 0 236 322 70 43 chr9 27127176 27127291 -115144153 + L2 LINE L2 3153 3270 -2 1859 174 7 0 chr9 27127620 27127918 -115143526 + AluSx SINE Alu 1 300 -12 2218 234 44 127 chr9 27128847 27130039 -115141405 - MER52A LTR ERV1 0 1755 663 268 358 56 12 chr9 27131272 27131434 -115140010 - MIR SINE MIR -70 192 24 477 249 143 112 chr9 27131564 27131848 -115139596 - L1MDb LINE L1 -4392 2433 2159 9400 93 2 0 chr9 27131848 27133936 -115137508 - L1PA7 LINE L1 -2 6152 4059 477 249 143 112 chr9 27133936 27133992 -115137452 - L1MDb LINE L1 -4666 2159 2106 2342 176 30 17 chr9 27133992 27134451 -115136993 + MLT1C LTR MaLR 1 465 -2 477 249 143 112 chr9 27134451 27134502 -115136942 - L1MDb LINE L1 -4719 2106 2029 361 336 40 10 chr9 27134647 27134956 -115136488 - L1MDb LINE L1 -4869 1673 1429 1524 219 6 0 chr9 27135023 27135342 -115136102 - L1PB4 LINE L1 -12 6144 5824 1921 40 0 0 chr9 27135342 27135567 -115135877 - L1PA5 LINE L1 -434 5721 5497 3281 50 0 0 chr9 27135567 27135962 -115135482 + L1PA5 LINE L1 5748 6149 -5 267 129 0 30 chr9 27135974 27136044 -115135400 - L1PB4 LINE L1 -318 5838 5772 257 230 150 0 chr9 27136042 27136142 -115135302 - L1MDb LINE L1 -5130 1517 1403 * 2401 205 64 123 chr9 27136225 27136672 -115134772 - L1MB8 LINE L1 -66 6108 5636 1476 237 92 31 chr9 27136672 27137148 -115134296 - MLT1D LTR MaLR 0 505 1 2401 205 64 123 chr9 27137148 27137319 -115134125 - L1MB8 LINE L1 -538 5636 5456 268 108 0 0 chr9 27137319 27137356 -115134088 + U2 snRNA snRNA 1 37 -151 2401 205 64 123 chr9 27137356 27137430 -115134014 - L1MB8 LINE L1 -718 5456 5433 1995 123 3 0 chr9 27137430 27137722 -115133722 - AluY SINE Alu -18 293 1 2401 205 64 123 chr9 27137722 27137836 -115133608 - L1MB8 LINE L1 -741 5433 5314 2235 77 24 0 chr9 27137839 27138137 -115133307 - AluY SINE Alu -6 305 1 422 365 14 18 chr9 27138534 27138816 -115132628 - L1MDb LINE L1 -6076 749 469 320 301 80 45 chr9 27139246 27139445 -115131999 - L1ME2 LINE L1 -243 5921 5716 21 82 0 0 chr9 27139816 27139865 -115131579 + AT_rich Low_complexity Low_complexity 1 49 0 496 171 30 0 chr9 27140328 27140492 -115130952 + (TA)n Simple_repeat Simple_repeat 2 170 0 197 156 0 0 chr9 27142344 27142376 -115129068 - L2 LINE L2 -15 3298 3267 1925 155 0 16 chr9 27142420 27142736 -115128708 - AluSx SINE Alu -1 311 1 288 292 92 8 chr9 27142878 27143008 -115128436 - L2 LINE L2 0 3313 3173 22 0 0 0 chr9 27143617 27143639 -115127805 + AT_rich Low_complexity Low_complexity 1 22 0 367 119 15 15 chr9 27145239 27145255 -115126189 + MADE1 DNA Mariner 14 29 -51 2247 114 7 0 chr9 27145255 27145562 -115125882 - AluSc SINE Alu 0 309 1 367 119 15 15 chr9 27145562 27145612 -115125832 + MADE1 DNA Mariner 28 80 0 1393 211 3 37 chr9 27146048 27146370 -115125074 - AluJo SINE Alu -1 311 1 32 43 0 0 chr9 27146564 27146610 -115124834 + AT_rich Low_complexity Low_complexity 1 46 0 1289 222 10 33 chr9 27147568 27147874 -115123570 - AluJo SINE Alu -13 299 1 240 325 155 15 chr9 27147948 27148213 -115123231 - L3 LINE CR1 -27 1550 1249 183 254 0 0 chr9 27148514 27148577 -115122867 + (CATATA)n Simple_repeat Simple_repeat 4 66 0 491 355 52 10 chr9 27148649 27149059 -115122385 + LTR16B LTR ERVL 3 460 -4 3008 164 6 0 chr9 27149165 27149660 -115121784 - L1PA16 LINE L1 -46 6120 5623 4972 83 3 0 chr9 27149660 27150313 -115121131 + HERV9 LTR ERV1 7745 8399 0 2612 143 82 185 chr9 27150313 27151352 -115120092 + pTR5 LTR ERV1 1 2438 0 6158 180 43 49 chr9 27151355 27152284 -115119160 + L1M4c LINE L1 873 1789 -4595 2774 162 12 12 chr9 27152284 27152779 -115118665 + LOR1a LTR ERV1 2 496 -1 6158 180 43 49 chr9 27152779 27153398 -115118046 + L1M4c LINE L1 1789 2411 -3973 716 161 7 7 chr9 27153399 27153542 -115117902 + L1MB3 LINE L1 6038 6180 -3 297 295 45 45 chr9 27153549 27153749 -115117695 + L1MEc LINE L1 1624 1823 -4573 445 293 63 52 chr9 27153933 27154220 -115117224 + L1MEc LINE L1 2012 2301 -4095 246 292 0 0 chr9 27155058 27155236 -115116208 + (TA)n Simple_repeat Simple_repeat 1 178 0 181 206 16 16 chr9 27156449 27156512 -115114932 + CT-rich Low_complexity Low_complexity 3 65 0 399 41 0 0 chr9 27157315 27157364 -115114080 + (TG)n Simple_repeat Simple_repeat 2 50 0 1312 248 162 12 chr9 27157383 27157896 -115113548 + L1MC4 LINE L1 6856 7445 -597 3638 135 40 62 chr9 27157899 27158625 -115112819 + MER50 LTR ERV1 1 710 -24 1148 233 43 94 chr9 27158635 27159235 -115112209 + L1MD3 LINE L1 7486 8022 -2 774 310 82 4 chr9 27159238 27159519 -115111925 + L2 LINE L2 2449 2751 -563 7738 16 0 1 chr9 27159534 27160499 -115110945 + L1PA3 LINE L1 5212 6175 0 306 233 41 0 chr9 27160530 27160603 -115110841 + MER94 DNA DNA 19 94 -40 323 402 40 17 chr9 27160642 27160938 -115110506 + L2 LINE L2 2819 3121 -192 382 279 52 65 chr9 27161123 27161277 -115110167 + L2 LINE L2 3161 3312 -1 22 0 0 0 chr9 27161417 27161439 -115110005 + AT_rich Low_complexity Low_complexity 1 22 0 1159 239 49 3 chr9 27162310 27162657 -115108787 + L1ME4a LINE L1 5513 5875 -246 24 0 0 0 chr9 27162672 27162696 -115108748 + AT_rich Low_complexity Low_complexity 1 24 0 581 357 65 42 chr9 27164369 27164845 -115106599 + LTR16C LTR ERVL 5 491 0 336 203 0 0 chr9 27165109 27165168 -115106276 + MLT1D LTR MaLR 1 59 -446 836 275 17 4 chr9 27165297 27165533 -115105911 + MLT1D LTR MaLR 267 505 0 322 326 62 0 chr9 27166106 27166235 -115105209 + MIR SINE MIR 50 186 -76 380 42 0 56 chr9 27166242 27166313 -115105131 + (TAATG)n Simple_repeat Simple_repeat 4 70 0 191 333 72 67 chr9 27166901 27167081 -115104363 + L2 LINE L2 2928 3108 -164 2735 94 23 15 chr9 27167701 27168096 -115103348 + MLT2A1 LTR ERVL 3 400 -44 202 158 26 0 chr9 27168096 27168134 -115103310 + (TA)n Simple_repeat Simple_repeat 2 40 0 377 113 0 16 chr9 27168176 27168238 -115103206 - MLT2A2 LTR ERVL -1 452 392 216 123 18 53 chr9 27168283 27168340 -115103104 + (TA)n Simple_repeat Simple_repeat 2 56 0 384 71 0 18 chr9 27168340 27168396 -115103048 + MLT2A1 LTR ERVL 399 453 0 190 297 143 22 chr9 27168615 27168706 -115102738 + MIR SINE MIR 98 199 -63 341 299 11 11 chr9 27169009 27169096 -115102348 + MER58A DNA MER1_type 4 90 -17 643 224 16 0 chr9 27169132 27169257 -115102187 + MER58A DNA MER1_type 95 221 -3 318 50 0 0 chr9 27169747 27169787 -115101657 + (TG)n Simple_repeat Simple_repeat 1 40 0 231 170 0 0 chr9 27169787 27169834 -115101610 + GA-rich Low_complexity Low_complexity 2 48 0 315 171 66 26 chr9 27170084 27170160 -115101284 - L1ME4a LINE L1 -51 6070 5992 21 36 0 0 chr9 27171305 27171333 -115100111 + AT_rich Low_complexity Low_complexity 1 28 0 205 143 48 0 chr9 27172191 27172233 -115099211 + (CAGAGA)n Simple_repeat Simple_repeat 4 47 0 38 22 0 0 chr9 27172951 27172996 -115098448 + AT_rich Low_complexity Low_complexity 1 45 0 246 290 21 11 chr9 27174105 27174198 -115097246 + L1M1 LINE L1 5364 5457 -847 274 243 47 34 chr9 27174572 27174720 -115096724 - L1ME4a LINE L1 -304 5817 5668 1747 185 7 70 chr9 27174862 27175278 -115096166 + MLT1B LTR MaLR 1 390 0 407 274 46 46 chr9 27175549 27175635 -115095809 - MIR SINE MIR 0 262 174 2015 171 43 29 chr9 27175635 27176055 -115095389 + MSTB LTR MaLR 1 426 0 407 274 46 46 chr9 27176055 27176121 -115095323 - MIR SINE MIR -87 175 110 405 308 16 38 chr9 27176201 27176386 -115095058 - MIR SINE MIR 0 262 82 260 243 54 0 chr9 27176807 27176881 -115094563 + MER116 DNA Mariner 3 80 0 1636 265 115 59 chr9 27177755 27178633 -115092811 + L1MEc LINE L1 44 970 -5426 860 284 55 32 chr9 27178961 27179544 -115091900 + L1M3d LINE L1 1203 1783 -4520 21 71 0 0 chr9 27179607 27179649 -115091795 + AT_rich Low_complexity Low_complexity 1 42 0 5968 271 69 10 chr9 27179998 27182427 -115089017 + L1M3d LINE L1 2607 5179 -1203 2855 226 29 68 chr9 27182448 27182874 -115088570 + L1ME1 LINE L1 5398 5839 -563 2037 47 0 55 chr9 27182874 27183148 -115088296 + AluY SINE Alu 39 297 -14 2855 226 29 68 chr9 27183148 27183756 -115087688 + L1ME1 LINE L1 5839 6397 -5 718 197 21 7 chr9 27186408 27186550 -115084894 - MIR SINE MIR -24 238 95 535 252 65 42 chr9 27186846 27187060 -115084384 + MER106A DNA MER1_type 1 219 -17 24 0 0 0 chr9 27187683 27187707 -115083737 + AT_rich Low_complexity Low_complexity 1 24 0 771 227 58 58 chr9 27187709 27187951 -115083493 - MIR SINE MIR -15 247 6 379 330 26 26 chr9 27187946 27188140 -115083304 - MIR SINE MIR -28 234 41 * 245 29 0 29 chr9 27188250 27188285 -115083159 + (TCTA)n Simple_repeat Simple_repeat 1 34 0 265 183 39 33 chr9 27188850 27189003 -115082441 + (TAGA)n Simple_repeat Simple_repeat 1 154 0 182 91 0 73 chr9 27189005 27189060 -115082384 + (TCTA)n Simple_repeat Simple_repeat 1 51 0 185 146 42 156 chr9 27189477 27189573 -115081871 - MIR SINE MIR -54 208 124 351 330 101 0 chr9 27190826 27191014 -115080430 - L1ME3A LINE L1 -215 5938 5732 2560 84 91 19 chr9 27191016 27191432 -115080012 + LTR7 LTR ERV1 3 448 -2 15027 104 11 6 chr9 27191434 27193906 -115077538 + HERVH LTR ERV1 1 2983 -4730 8363 106 3 3 chr9 27193916 27195990 -115075454 + HERVH LTR ERV1 3140 5149 -2564 1239 171 19 0 chr9 27195991 27196207 -115075237 + HERVH LTR ERV1 5600 5819 -1894 * 2370 100 48 13 chr9 27196205 27196584 -115074860 + HERVH LTR ERV1 7322 7713 0 2050 79 16 13 chr9 27196584 27196942 -115074502 + LTR7 LTR ERV1 1 448 -2 352 299 102 0 chr9 27197080 27197230 -115074214 - L1ME3A LINE L1 -588 5559 5394 323 356 96 10 chr9 27197231 27197543 -115073901 - L1ME3A LINE L1 -4635 1494 1156 339 280 29 34 chr9 27197595 27197802 -115073642 - L1ME3A LINE L1 -5011 1108 903 2963 113 7 13 chr9 27197876 27198556 -115072888 - L1PA8A LINE L1 -352 5779 5023 321 357 50 11 chr9 27198559 27198741 -115072703 - L1ME3A LINE L1 -5370 749 561 939 311 83 11 chr9 27199798 27200149 -115071295 - MLT2E LTR ERVL -240 388 13 333 0 0 0 chr9 27200286 27200323 -115071121 + (TAGA)n Simple_repeat Simple_repeat 1 37 0 281 318 150 18 chr9 27201268 27201488 -115069956 + MIR SINE MIR 14 262 0 480 247 41 53 chr9 27201578 27201748 -115069696 - L2 LINE L2 0 3313 3146 314 233 107 39 chr9 27201832 27201935 -115069509 + L2 LINE L2 3204 3313 0 22 56 0 0 chr9 27202037 27202073 -115069371 + AT_rich Low_complexity Low_complexity 1 36 0 778 195 40 29 chr9 27202990 27203164 -115068280 + MER45A DNA AcHobo 1 176 -2 386 272 87 74 chr9 27203166 27203478 -115067966 + LTR33 LTR ERVL 198 513 -8 24 0 0 0 chr9 27204320 27204344 -115067100 + AT_rich Low_complexity Low_complexity 1 24 0 525 281 22 45 chr9 27204346 27204524 -115066920 - MIR SINE MIR -18 244 71 189 295 76 97 chr9 27205188 27205425 -115066019 + L2 LINE L2 1830 2061 -1253 477 50 0 0 chr9 27206386 27206446 -115064998 + (TAGA)n Simple_repeat Simple_repeat 1 60 0 903 127 38 6 chr9 27207143 27207301 -115064143 + L1PA16 LINE L1 5985 6147 -19 1728 243 27 2 chr9 27207540 27208014 -115063430 + L1MC3 LINE L1 4849 5334 -812 5922 206 88 58 chr9 27208019 27209862 -115061582 + L1MC3 LINE L1 5432 7329 -456 1243 269 33 3 chr9 27209888 27210278 -115061166 - L1ME LINE L1 -351 5882 5481 1906 321 65 32 chr9 27210289 27211806 -115059638 - L1ME LINE L1 -4757 1639 74 2109 64 0 8 chr9 27211812 27212076 -115059368 - AluY SINE Alu -13 298 37 5415 59 4 4 chr9 27212085 27212785 -115058659 - L1PA5 LINE L1 0 6154 5455 561 79 0 0 chr9 27212785 27212861 -115058583 + L1PA5 LINE L1 5408 5483 -671 244 176 14 40 chr9 27213385 27213459 -115057985 + (TATAA)n Simple_repeat Simple_repeat 1 72 0 183 80 0 0 chr9 27214460 27214485 -115056959 + (A)n Simple_repeat Simple_repeat 1 25 0 316 279 0 0 chr9 27215419 27215498 -115055946 + MER5A DNA MER1_type 28 106 -83 625 271 63 14 chr9 27215537 27215758 -115055686 + MIR SINE MIR 23 254 -8 608 235 0 0 chr9 27216149 27216281 -115055163 + FLAM_C SINE Alu 2 133 0 1171 178 10 0 chr9 27216313 27216510 -115054934 + AluSg/x SINE Alu 85 283 -29 22 0 0 0 chr9 27216516 27216538 -115054906 + AT_rich Low_complexity Low_complexity 1 22 0 551 195 34 105 chr9 27216715 27216982 -115054462 + L1ME2 LINE L1 3671 3918 -2228 1902 254 129 42 chr9 27217013 27218177 -115053267 + L1ME2 LINE L1 4114 5487 -677 1940 37 0 12 chr9 27218177 27218421 -115053023 + L1PA5 LINE L1 5914 6154 0 1902 254 129 42 chr9 27218421 27219163 -115052281 + L1ME2 LINE L1 5487 6163 -1 14269 49 1 2 chr9 27219354 27221154 -115050290 - L1P LINE L1 -3330 2816 1019 7263 34 12 1 chr9 27221154 27222459 -115048985 + L1PA4 LINE L1 4839 6153 -2 2384 113 20 0 chr9 27222479 27222833 -115048611 - L1PA10 LINE L1 -7 6161 5801 257 340 39 0 chr9 27223042 27223145 -115048299 + MIR SINE MIR 35 141 -121 1559 172 0 19 chr9 27223309 27223576 -115047868 + AluSq SINE Alu 1 262 -51 256 361 110 11 chr9 27225828 27226019 -115045425 + MIR SINE MIR 29 238 -24 227 180 80 0 chr9 27227052 27227102 -115044342 + HsTC2 DNA Tc2 772 825 -1073 551 237 78 23 chr9 27227212 27227545 -115043899 - L1MB8 LINE L1 -7 6171 5782 233 238 95 0 chr9 27227736 27227799 -115043645 + L1ME4a LINE L1 5529 5597 -2188 363 23 0 0 chr9 27228100 27228144 -115043300 + (TAGA)n Simple_repeat Simple_repeat 3 46 0 242 347 0 0 chr9 27229137 27229209 -115042235 - MIR SINE MIR -18 244 173 1081 217 63 43 chr9 27230030 27230314 -115041130 - MLT1A2 LTR MaLR 0 467 162 3399 52 5 14 chr9 27230314 27230760 -115040684 - L1PA7 LINE L1 -5 6149 5708 1081 217 63 43 chr9 27230760 27230916 -115040528 - MLT1A2 LTR MaLR -305 162 11 590 87 64 10 chr9 27231618 27232094 -115039350 + (TA)n Simple_repeat Simple_repeat 1 501 0 1489 191 54 7 chr9 27232296 27232594 -115038850 - AluJb SINE Alu 0 312 1 754 175 0 0 chr9 27232994 27233114 -115038330 + FLAM_A SINE Alu 2 121 -12 363 23 0 0 chr9 27233115 27233159 -115038285 + (CATA)n Simple_repeat Simple_repeat 2 45 0 188 273 141 50 chr9 27233582 27233681 -115037763 + L2 LINE L2 3206 3313 0 21 71 0 0 chr9 27233885 27233927 -115037517 + AT_rich Low_complexity Low_complexity 1 42 0 25 31 0 0 chr9 27234647 27234679 -115036765 + AT_rich Low_complexity Low_complexity 1 32 0 2004 108 28 3 chr9 27234805 27235091 -115036353 - AluSx SINE Alu -19 293 1 210 323 30 20 chr9 27235833 27235932 -115035512 + MER5A DNA MER1_type 7 106 -83 339 314 176 6 chr9 27238028 27238340 -115033104 + L1ME4a LINE L1 5741 6105 -16 22 0 0 0 chr9 27238341 27238363 -115033081 + AT_rich Low_complexity Low_complexity 1 22 0 662 195 31 0 chr9 27238573 27238701 -115032743 + MLT1A2 LTR MaLR 1 132 -242 581 220 14 28 chr9 27238693 27238834 -115032610 + MLT1A2 LTR MaLR 236 374 0 * 345 266 11 82 chr9 27239332 27239599 -115031845 + L1MEd LINE L1 1249 1496 -5138 305 321 57 44 chr9 27239619 27239868 -115031576 + L1MEd LINE L1 1457 1765 -4832 4297 148 16 7 chr9 27240017 27240758 -115030686 + L1MC1 LINE L1 5585 6332 -1 313 306 147 48 chr9 27240878 27241299 -115030145 + L1MEd LINE L1 2135 2597 -4228 11010 249 45 55 chr9 27241510 27245559 -115025885 + L1MA4A LINE L1 3 4099 -2749 3867 180 51 13 chr9 27245532 27246624 -115024820 + L1MA4A LINE L1 5818 6861 -7 * 479 175 33 0 chr9 27246694 27246814 -115024630 + (TA)n Simple_repeat Simple_repeat 2 125 0 1822 124 4 0 chr9 27246834 27247084 -115024360 - AluSx SINE Alu -61 251 1 189 0 0 0 chr9 27247164 27247185 -115024259 + (T)n Simple_repeat Simple_repeat 1 21 0 548 259 96 7 chr9 27247191 27247461 -115023983 + L1MEd LINE L1 3220 3513 -3131 416 222 90 21 chr9 27247551 27247695 -115023749 + Charlie2a DNA MER1_type 1421 1574 -1288 818 249 92 66 chr9 27247801 27248216 -115023228 + Charlie2a DNA MER1_type 1827 2265 -597 1479 185 46 0 chr9 27248216 27248497 -115022947 + AluJo SINE Alu 1 294 -18 818 249 92 66 chr9 27248497 27248715 -115022729 + Charlie2a DNA MER1_type 2265 2476 -386 385 283 78 58 chr9 27248877 27249135 -115022309 - Charlie2a DNA MER1_type -2437 345 83 243 343 75 14 chr9 27249264 27249410 -115022034 - MER112 DNA MER1_type -1 259 105 227 284 0 0 chr9 27249428 27249495 -115021949 + (TA)n Simple_repeat Simple_repeat 2 68 0 183 80 0 0 chr9 27250079 27250104 -115021340 + (A)n Simple_repeat Simple_repeat 1 25 0 2095 110 3 0 chr9 27251405 27251714 -115019730 - AluSq SINE Alu 0 310 1 216 256 12 24 chr9 27252071 27252153 -115019291 + (TA)n Simple_repeat Simple_repeat 1 81 0 21 0 0 0 chr9 27252233 27252254 -115019190 + AT_rich Low_complexity Low_complexity 1 21 0 230 148 49 0 chr9 27253867 27253928 -115017516 + (TAATG)n Simple_repeat Simple_repeat 3 66 0 205 339 111 12 chr9 27254035 27254058 -115017386 + MIR SINE MIR 34 53 -209 2018 112 10 7 chr9 27254058 27254352 -115017092 - AluSg SINE Alu -15 295 1 205 339 111 12 chr9 27254352 27254499 -115016945 + MIR SINE MIR 53 221 -41 503 101 13 13 chr9 27254684 27254763 -115016681 + L1MC1 LINE L1 6250 6328 -5 253 379 23 29 chr9 27257344 27257518 -115013926 + MIR SINE MIR 20 192 -70 3423 204 67 18 chr9 27258868 27259497 -115011947 - L1MC3 LINE L1 -21 7764 7167 1498 192 67 28 chr9 27259497 27259856 -115011588 - THE1C LTR MaLR 0 375 3 9069 156 7 35 chr9 27259858 27261482 -115009962 - THE1C-int LTR MaLR 0 1580 3 1786 132 82 28 chr9 27261485 27261658 -115009786 - THE1C LTR MaLR -1 374 212 378 0 0 0 chr9 27261658 27261700 -115009744 + (GA)n Simple_repeat Simple_repeat 1 42 0 1786 132 82 28 chr9 27261700 27261881 -115009563 - THE1C LTR MaLR -163 212 1 3423 204 67 18 chr9 27261881 27262101 -115009343 - L1MC3 LINE L1 -619 7166 6866 183 114 0 0 chr9 27262102 27262137 -115009307 + (TTAG)n Simple_repeat Simple_repeat 3 37 0 6217 258 47 16 chr9 27262174 27265355 -115006089 - L1MCa LINE L1 -1538 5403 1899 2742 250 67 30 chr9 27265362 27265559 -115005885 - L1MCa LINE L1 -5106 1316 1128 192 40 0 0 chr9 27265559 27265584 -115005860 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 2742 250 67 30 chr9 27265584 27265997 -115005447 - L1MCa LINE L1 -5294 1128 732 2521 48 3 3 chr9 27265997 27266307 -115005137 + AluY SINE Alu 1 310 -1 2742 250 67 30 chr9 27266307 27266630 -115004814 - L1MCa LINE L1 -5690 732 12 312 244 90 65 chr9 27266679 27266880 -115004564 + L1MC4a LINE L1 5741 5946 -1862 410 95 0 95 chr9 27266930 27267004 -115004440 + MLT2B3 LTR ERVL 1 67 -487 2374 208 22 28 chr9 27267054 27267554 -115003890 + MLT2B3 LTR ERVL 38 534 -20 24 53 0 0 chr9 27267588 27267626 -115003818 + AT_rich Low_complexity Low_complexity 1 38 0 198 103 0 0 chr9 27267708 27267737 -115003707 + (TA)n Simple_repeat Simple_repeat 2 30 0 455 288 23 57 chr9 27268747 27268924 -115002520 + MER117 DNA MER1_type 3 173 -24 297 278 0 46 chr9 27269031 27269139 -115002305 - MIR SINE MIR 0 262 160 2532 208 56 20 chr9 27270141 27270781 -115000663 - L1MB8 LINE L1 -5 6173 5511 1080 253 54 41 chr9 27270776 27271139 -115000305 - L1M4b LINE L1 -6355 504 11 * 5580 118 36 14 chr9 27271333 27272295 -114999149 - Tigger3b DNA MER2_type 0 1231 249 1738 220 40 30 chr9 27272295 27272700 -114998744 - LTR2 LTR ERV1 0 449 41 1483 138 74 0 chr9 27272787 27273018 -114998426 - Tigger3b DNA MER2_type -983 248 1 1238 284 61 33 chr9 27273018 27274233 -114997211 + L1MEc LINE L1 1619 2836 -3379 1818 224 25 43 chr9 27274251 27274689 -114996755 - MLT2B3 LTR ERVL -124 430 1 2521 278 35 23 chr9 27274691 27274898 -114996546 + L1MEc LINE L1 240 443 -5953 1875 151 13 0 chr9 27274898 27275196 -114996248 + AluSx SINE Alu 4 305 -7 2521 278 35 23 chr9 27275196 27275929 -114995515 + L1MEc LINE L1 443 1191 -5205 * 2661 180 106 41 chr9 27275922 27276382 -114995062 + MLT-int LTR MaLR 34 545 -1190 1423 158 81 56 chr9 27276382 27276667 -114994777 + AluSx SINE Alu 1 292 -20 2661 180 106 41 chr9 27276667 27276822 -114994622 + MLT-int LTR MaLR 545 689 -1046 1721 183 19 46 chr9 27276833 27277205 -114994239 - THE1B LTR MaLR 0 364 3 2469 102 3 0 chr9 27277207 27277541 -114993903 - THE1B-int LTR MaLR 0 1580 1246 2343 222 13 4 chr9 27277545 27278009 -114993435 + MLT1A1-int LTR MaLR 1268 1735 0 1051 202 102 97 chr9 27278009 27278371 -114993073 + MLT1A1 LTR MaLR 1 364 -1 1653 219 92 104 chr9 27279719 27280668 -114990776 - LTR1B LTR ERV1 -1 1019 1 317 316 113 47 chr9 27283302 27283577 -114987867 - MLT1J1 LTR MaLR -8 438 146 22 35 0 0 chr9 27284256 27284285 -114987159 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr9 27284516 27284537 -114986907 + AT_rich Low_complexity Low_complexity 1 21 0 250 373 0 26 chr9 27284696 27284849 -114986595 + MIR SINE MIR 104 252 -10 3270 231 67 24 chr9 27334961 27335737 -114935707 + L1MEc LINE L1 1209 1950 -4265 2746 148 14 18 chr9 27335737 27336242 -114935202 + L1MA8 LINE L1 5784 6286 -5 3270 231 67 24 chr9 27336242 27336890 -114934554 + L1MEc LINE L1 1950 2694 -3521 269 172 17 0 chr9 27336898 27336956 -114934488 + L1MD1 LINE L1 1888 1946 -4594 2074 269 40 19 chr9 27337044 27337948 -114933496 + L1MD1 LINE L1 3039 3961 -2579 1903 182 48 42 chr9 27337980 27338520 -114932924 - MLT2A2 LTR ERVL 0 554 1 4753 242 48 13 chr9 27338520 27341088 -114930356 + L1MD1 LINE L1 3973 6636 0 2147 116 0 26 chr9 27341186 27341497 -114929947 - AluSx SINE Alu -7 305 3 353 328 153 6 chr9 27342198 27342375 -114929069 + MIR SINE MIR 1 203 -59 209 305 0 49 chr9 27342604 27342686 -114928758 + MIR SINE MIR 75 152 -110 1065 95 4 17 chr9 27342753 27342985 -114928459 + (TTCC)n Simple_repeat Simple_repeat 1 228 0 22 0 0 0 chr9 27343150 27343172 -114928272 + AT_rich Low_complexity Low_complexity 1 22 0 445 180 0 11 chr9 27344192 27344281 -114927163 - MER33 DNA MER1_type 0 363 276 374 247 47 9 chr9 27344275 27344386 -114927058 - MER33 DNA MER1_type -250 74 1 * 23 0 0 0 chr9 27344885 27344908 -114926536 + AT_rich Low_complexity Low_complexity 1 23 0 2421 63 3 0 chr9 27344930 27345229 -114926215 + AluSp SINE Alu 2 301 -12 32 26 0 0 chr9 27345277 27345316 -114926128 + AT_rich Low_complexity Low_complexity 1 39 0 392 319 112 30 chr9 27345911 27346143 -114925301 + L1ME LINE L1 5351 5601 -520 29 28 0 0 chr9 27346233 27346269 -114925175 + AT_rich Low_complexity Low_complexity 1 36 0 277 200 14 14 chr9 27346277 27346347 -114925097 + L1ME LINE L1 5769 5838 -283 2429 267 126 36 chr9 27346495 27347948 -114923496 + Charlie7 DNA MER1_type 725 2308 -304 24 0 0 0 chr9 27347967 27347991 -114923453 + AT_rich Low_complexity Low_complexity 1 24 0 1936 220 106 33 chr9 27348813 27349331 -114922113 + ERVL-F LTR ERVL 5201 5756 -8 313 338 35 7 chr9 27349331 27349473 -114921971 + MLT2F LTR ERVL 1 146 -517 * 464 220 0 13 chr9 27349472 27349587 -114921857 + MLT1E3 LTR MaLR 46 205 -449 378 0 0 0 chr9 27351064 27351106 -114920338 + (CA)n Simple_repeat Simple_repeat 1 42 0 201 133 0 0 chr9 27351399 27351429 -114920015 + (CATATA)n Simple_repeat Simple_repeat 3 32 0 357 145 0 0 chr9 27351519 27351581 -114919863 + (TA)n Simple_repeat Simple_repeat 1 62 0 1875 128 35 10 chr9 27351633 27351921 -114919523 + AluSq SINE Alu 1 295 -18 320 341 7 51 chr9 27351931 27352069 -114919375 - MIR SINE MIR -110 152 21 943 218 57 5 chr9 27352113 27352306 -114919138 + MER82 DNA MER2_type 445 647 -6 186 103 0 0 chr9 27352782 27352811 -114918633 + (TG)n Simple_repeat Simple_repeat 2 30 0 217 137 98 20 chr9 27354099 27354150 -114917294 - L2 LINE L2 -4 3309 3255 314 284 64 18 chr9 27354205 27354314 -114917130 + L2 LINE L2 3192 3305 -8 * 340 288 179 14 chr9 27354300 27354512 -114916932 - MIR SINE MIR -10 252 6 7252 160 11 21 chr9 27355917 27357227 -114914217 - HSMAR2 DNA Mariner -3 1299 3 272 196 18 0 chr9 27357375 27357431 -114914013 + MER63 DNA MER1_type 694 750 -311 241 211 0 19 chr9 27357432 27357484 -114913960 + MER63 DNA MER1_type 977 1027 -33 252 59 0 0 chr9 27357751 27357785 -114913659 + (CA)n Simple_repeat Simple_repeat 2 35 0 313 296 120 69 chr9 27358925 27358999 -114912445 + L2 LINE L2 3024 3093 -220 1973 144 3 0 chr9 27358999 27359291 -114912153 - AluSx SINE Alu -19 293 1 313 296 120 69 chr9 27359291 27359490 -114911954 + L2 LINE L2 3093 3311 -2 195 100 0 0 chr9 27361452 27361482 -114909962 + (CA)n Simple_repeat Simple_repeat 1 30 0 1808 166 44 14 chr9 27361690 27362052 -114909392 - THE1C LTR MaLR 0 375 3 9014 133 38 40 chr9 27362054 27363635 -114907809 - THE1C-int LTR MaLR 0 1580 3 1453 191 70 14 chr9 27363637 27363992 -114907452 - THE1C LTR MaLR 0 375 1 895 232 150 37 chr9 27364016 27364417 -114907027 + MLT1D LTR MaLR 54 499 -6 15401 203 29 24 chr9 27365194 27368858 -114902586 - L1PA11 LINE L1 -1 7611 3966 251 231 0 13 chr9 27368858 27368936 -114902508 + (TG)n Simple_repeat Simple_repeat 2 78 0 15401 203 29 24 chr9 27368936 27368950 -114902494 - L1PA11 LINE L1 -3646 3966 3954 2207 98 0 3 chr9 27368950 27369245 -114902199 - AluSq SINE Alu -19 294 1 15401 203 29 24 chr9 27369245 27372338 -114899106 - L1PA11 LINE L1 -3658 3954 11 5069 121 17 10 chr9 27372458 27373232 -114898212 + MER4E LTR ERV1 1 779 0 349 85 0 0 chr9 27373345 27373392 -114898052 + LOR1b LTR ERV1 1 47 -414 2107 173 14 0 chr9 27373393 27373752 -114897692 + LOR1a LTR ERV1 134 497 0 188 392 39 10 chr9 27374996 27375098 -114896346 + MER5A DNA MER1_type 61 165 -24 367 62 62 0 chr9 27375444 27375509 -114895935 + CT-rich Low_complexity Low_complexity 4 72 0 1775 159 0 7 chr9 27375526 27375815 -114895629 - AluJb SINE Alu -25 287 1 432 275 9 0 chr9 27376566 27376675 -114894769 + MIR SINE MIR 87 196 -66 2059 233 20 39 chr9 27376830 27377340 -114894104 + MLT1D LTR MaLR 1 500 -5 373 270 58 0 chr9 27377325 27377462 -114893982 - MLT1L LTR MaLR -59 556 412 * 23 33 0 0 chr9 27377621 27377651 -114893793 + AT_rich Low_complexity Low_complexity 1 30 0 405 257 104 69 chr9 27378011 27378346 -114893098 - L1M4 LINE L1 -1488 4658 4312 222 62 0 0 chr9 27378633 27378665 -114892779 + (TG)n Simple_repeat Simple_repeat 2 33 0 713 350 104 12 chr9 27378770 27379344 -114892100 - L1MEd LINE L1 -5491 628 2 321 309 62 88 chr9 27379784 27380205 -114891239 - L1MDa LINE L1 -4476 2064 1655 22 35 0 0 chr9 27380248 27380277 -114891167 + AT_rich Low_complexity Low_complexity 1 29 0 261 317 234 35 chr9 27380968 27381451 -114889993 + L2 LINE L2 268 846 -2468 200 247 14 27 chr9 27381952 27382025 -114889419 + GA-rich Low_complexity Low_complexity 2 73 0 267 238 63 0 chr9 27382085 27382148 -114889296 - MIR SINE MIR -109 99 33 269 248 120 26 chr9 27382914 27383031 -114888413 + MER67D LTR ERV1 386 513 -1 415 218 80 58 chr9 27383216 27383404 -114888040 - MER106A DNA MER1_type -44 192 1 7220 17 0 0 chr9 27383743 27384568 -114886876 + L1PA3 LINE L1 5328 6152 -3 21 57 0 0 chr9 27384589 27384624 -114886820 + AT_rich Low_complexity Low_complexity 1 35 0 209 179 0 0 chr9 27384679 27384718 -114886726 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1761 209 64 11 chr9 27385163 27385598 -114885846 - MER39 LTR ERV1 0 707 250 237 232 188 0 chr9 27385572 27385641 -114885803 - LTR29 LTR ERV1 -534 88 7 * 1933 111 54 0 chr9 27385811 27386091 -114885353 - AluSg SINE Alu -12 298 4 272 338 92 7 chr9 27386677 27386819 -114884625 + MIR SINE MIR 29 182 -80 24 0 0 0 chr9 27386881 27386905 -114884539 + AT_rich Low_complexity Low_complexity 1 24 0 27 49 0 0 chr9 27388505 27388546 -114882898 + AT_rich Low_complexity Low_complexity 1 41 0 21 36 0 0 chr9 27388598 27388626 -114882818 + AT_rich Low_complexity Low_complexity 1 28 0 240 216 0 63 chr9 27388873 27388984 -114882460 + T-rich Low_complexity Low_complexity 3 106 0 295 301 29 0 chr9 27389053 27389156 -114882288 + MER69A DNA AcHobo 65 170 -7 26 50 0 0 chr9 27389183 27389223 -114882221 + AT_rich Low_complexity Low_complexity 1 40 0 234 321 19 19 chr9 27389342 27389448 -114881996 + LTR48B LTR ERV1 1 106 -538 993 233 56 86 chr9 27389451 27389733 -114881711 + MER39 LTR ERV1 335 605 -102 2081 118 16 0 chr9 27389733 27390038 -114881406 - AluSg SINE Alu 0 310 1 993 233 56 86 chr9 27390038 27390129 -114881315 + MER39 LTR ERV1 605 697 -10 29 60 0 0 chr9 27390201 27390251 -114881193 + AT_rich Low_complexity Low_complexity 1 50 0 400 291 77 57 chr9 27390478 27390828 -114880616 - L1MEc LINE L1 -3516 2699 2343 965 198 84 0 chr9 27391066 27391303 -114880141 - L1MD3 LINE L1 -881 7114 6858 1139 261 35 0 chr9 27391308 27391678 -114879766 - L1M LINE L1 -836 5310 4944 464 283 31 19 chr9 27391692 27391851 -114879593 + L1MEc LINE L1 553 713 -5683 1125 304 35 29 chr9 27391865 27392356 -114879088 - L1MEc LINE L1 -5869 527 34 2161 92 3 41 chr9 27394380 27394696 -114876748 - AluSc SINE Alu 0 309 6 184 337 145 0 chr9 27395046 27395129 -114876315 + L2 LINE L2 3161 3255 -17 21 57 0 0 chr9 27395574 27395609 -114875835 + AT_rich Low_complexity Low_complexity 1 35 0 186 247 62 62 chr9 27395903 27396000 -114875444 - MIR SINE MIR -64 144 48 21 57 0 0 chr9 27396370 27396405 -114875039 + AT_rich Low_complexity Low_complexity 1 35 0 4516 239 93 49 chr9 27396441 27398402 -114873042 + L1M4 LINE L1 14 2059 -4587 340 326 94 45 chr9 27398411 27398678 -114872766 + L1M4 LINE L1 2205 2484 -4162 1690 186 18 0 chr9 27398778 27399063 -114872381 - AluJo SINE Alu -19 293 4 367 274 94 86 chr9 27399086 27399469 -114871975 + MLT1I LTR MaLR 1 386 -23 24 32 0 0 chr9 27399566 27399597 -114871847 + AT_rich Low_complexity Low_complexity 1 31 0 2263 124 16 24 chr9 27399845 27400223 -114871221 + THE1C LTR MaLR 1 375 0 8927 138 28 48 chr9 27400223 27401836 -114869608 + THE1C-int LTR MaLR 1 1580 0 1940 159 21 29 chr9 27401836 27402214 -114869230 + THE1C LTR MaLR 1 375 0 193 391 0 11 chr9 27402261 27402353 -114869091 - MIR SINE MIR 0 262 172 1681 186 139 16 chr9 27403673 27404054 -114867390 - MSTA LTR MaLR 0 428 1 8412 186 30 5 chr9 27404054 27405664 -114865780 - MSTA-int LTR MaLR 0 1651 1 1828 171 127 16 chr9 27405664 27406049 -114865395 - MSTA LTR MaLR 0 428 1 2266 119 0 0 chr9 27406137 27406447 -114864997 - AluSg SINE Alu 0 310 1 208 231 26 13 chr9 27407334 27407412 -114864032 + CT-rich Low_complexity Low_complexity 2 80 0 205 315 126 42 chr9 27408034 27408177 -114863267 - L2 LINE L2 0 3313 3159 342 331 16 16 chr9 27408400 27408524 -114862920 - MIR SINE MIR -121 141 18 4316 234 50 14 chr9 27409842 27412859 -114858585 - L1M4c LINE L1 -2511 3871 800 245 357 31 16 chr9 27413222 27413351 -114858093 - L1M4c LINE L1 -5756 547 417 1241 122 11 0 chr9 27413843 27414031 -114857413 - L1PA16 LINE L1 -259 5907 5718 313 297 64 64 chr9 27414045 27414328 -114857116 - L1MEd LINE L1 -5192 939 657 271 209 15 30 chr9 27414469 27414536 -114856908 - L1MEd LINE L1 -5476 643 578 1628 222 160 33 chr9 27414588 27415001 -114856443 + MLT2B2 LTR ERVL 3 481 -34 392 37 19 0 chr9 27415001 27415055 -114856389 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 1628 222 160 33 chr9 27415055 27415096 -114856348 + MLT2B2 LTR ERVL 481 515 0 1607 186 7 0 chr9 27416690 27417000 -114854444 + AluJb SINE Alu 5 316 0 918 276 23 5 chr9 27417001 27417215 -114854229 - MER21B LTR ERV1 -631 232 15 462 187 0 0 chr9 27417223 27417314 -114854130 + (TA)n Simple_repeat Simple_repeat 2 92 0 1483 226 137 67 chr9 27417322 27417980 -114853464 + MER50 LTR ERV1 10 713 -21 1441 249 67 41 chr9 27418046 27418507 -114852937 + MER21B LTR ERV1 248 720 -143 4742 147 72 12 chr9 27418582 27419434 -114852010 + MER4D LTR ERV1 1 903 0 189 221 59 59 chr9 27419656 27419724 -114851720 + L2 LINE L2 1365 1432 -1882 249 277 116 26 chr9 27421205 27421360 -114850084 - MIR SINE MIR 0 262 94 202 295 7 81 chr9 27421410 27421559 -114849885 + MIR SINE MIR 67 204 -58 22 56 0 0 chr9 27422976 27423012 -114848432 + AT_rich Low_complexity Low_complexity 1 36 0 24 32 0 0 chr9 27423068 27423099 -114848345 + AT_rich Low_complexity Low_complexity 1 31 0 9145 139 42 40 chr9 27423530 27426271 -114845173 - L1PA13 LINE L1 -1 6162 3424 516 179 17 0 chr9 27426284 27426399 -114845045 - L1 LINE L1 -2061 4085 3963 270 353 44 15 chr9 27428375 27428511 -114842933 - MIR SINE MIR -111 151 12 1215 201 37 13 chr9 27428814 27429112 -114842332 + AluJo SINE Alu 2 306 -6 629 302 68 14 chr9 27430812 27431034 -114840410 - MIR SINE MIR -26 236 3 2261 86 0 0 chr9 27431138 27431430 -114840014 - AluY SINE Alu -19 292 1 837 329 162 30 chr9 27431440 27432265 -114839179 + L3 LINE CR1 470 1403 -174 1813 164 0 7 chr9 27432682 27432980 -114838464 - AluSx SINE Alu -16 296 1 2214 127 22 14 chr9 27433037 27433398 -114838046 + THE1B LTR MaLR 1 364 0 320 328 78 36 chr9 27433692 27433884 -114837560 - MIR SINE MIR -7 255 56 342 0 0 0 chr9 27434397 27434435 -114837009 + (CA)n Simple_repeat Simple_repeat 2 39 0 227 284 12 25 chr9 27434872 27434953 -114836491 + MIR3 SINE MIR 125 204 -4 218 297 109 10 chr9 27435082 27435183 -114836261 + L2 LINE L2 3203 3313 0 243 0 0 0 chr9 27435486 27435513 -114835931 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 247 169 24 84 chr9 27435831 27435914 -114835530 - MIR SINE MIR -71 191 114 21 57 0 0 chr9 27437955 27437990 -114833454 + AT_rich Low_complexity Low_complexity 1 35 0 214 379 40 0 chr9 27438491 27438615 -114832829 - MIR3 SINE MIR -43 165 37 24 32 0 0 chr9 27439122 27439153 -114832291 + AT_rich Low_complexity Low_complexity 1 31 0 351 0 0 0 chr9 27439273 27439312 -114832132 + (GA)n Simple_repeat Simple_repeat 1 39 0 518 304 42 35 chr9 27439469 27439729 -114831715 - MIR SINE MIR 0 262 1 234 383 74 0 chr9 27441063 27441225 -114830219 - MIR SINE MIR 0 262 89 1625 170 30 7 chr9 27441644 27441944 -114829500 + AluJb SINE Alu 1 307 -5 454 61 0 192 chr9 27442423 27442465 -114828979 + MADE1 DNA Mariner 1 49 -31 821 36 0 9 chr9 27442465 27442575 -114828869 + (TTTTA)n Simple_repeat Simple_repeat 2 110 0 1868 75 43 53 chr9 27442577 27442859 -114828585 - AluY SINE Alu -30 281 3 454 61 0 192 chr9 27442859 27442912 -114828532 + MADE1 DNA Mariner 50 80 0 396 344 109 0 chr9 27443211 27443403 -114828041 + MIR SINE MIR 47 259 -3 339 277 77 32 chr9 27443810 27443965 -114827479 - MIR SINE MIR -68 194 33 4307 184 22 35 chr9 27444537 27445362 -114826082 - MER21B LTR ERV1 -49 814 1 1970 151 0 3 chr9 27445708 27446012 -114825432 - AluSx SINE Alu -9 303 1 21 0 0 0 chr9 27446164 27446185 -114825259 + AT_rich Low_complexity Low_complexity 1 21 0 1183 173 106 15 chr9 27446330 27446685 -114824759 + MSTC LTR MaLR 13 428 0 249 255 0 0 chr9 27447524 27447571 -114823873 + MIR3 SINE MIR 149 195 -13 407 354 35 31 chr9 27449051 27449305 -114822139 - MIR SINE MIR -6 256 2 356 191 79 34 chr9 27449597 27449686 -114821758 - MIR SINE MIR -50 212 120 193 233 33 89 chr9 27450609 27450699 -114820745 - MIR SINE MIR -72 190 106 424 231 0 0 chr9 27450773 27450851 -114820593 + Tigger3(Golem) DNA MER2_type 2 79 -2950 * 917 199 20 15 chr9 27450831 27451027 -114820417 + Tigger3(Golem) DNA MER2_type 2831 3027 -2 868 259 62 10 chr9 27451600 27451889 -114819555 + MER46C DNA MER2_type 5 308 -30 395 305 107 16 chr9 27452270 27452457 -114818987 + MIR SINE MIR 59 262 0 239 347 138 0 chr9 27453597 27453764 -114817680 + MIR SINE MIR 67 256 -6 563 335 8 20 chr9 27453978 27454223 -114817221 - MIR SINE MIR 0 262 21 1955 231 41 12 chr9 27454303 27454792 -114816652 - MLT1D LTR MaLR 0 505 3 274 221 86 36 chr9 27456505 27456645 -114814799 + L1MC5 LINE L1 7504 7650 -311 213 121 0 0 chr9 27456824 27456857 -114814587 + (CA)n Simple_repeat Simple_repeat 1 33 0 254 266 17 121 chr9 27456971 27457144 -114814300 + MIR SINE MIR 61 215 -47 354 250 9 43 chr9 27457862 27457878 -114813566 - L1MA10 LINE L1 -52 6282 6267 2724 242 34 37 chr9 27457878 27458695 -114812749 - L1ME1 LINE L1 -55 6111 5297 262 178 37 37 chr9 27458837 27458944 -114812500 + L1MEc LINE L1 1004 1110 -5286 1047 196 19 44 chr9 27458950 27459220 -114812224 - L1MA10 LINE L1 -2026 4120 3858 * 4980 201 38 28 chr9 27459215 27460552 -114810892 + L1MA10 LINE L1 4126 5448 -886 1971 137 3 6 chr9 27460552 27460865 -114810579 + AluSq SINE Alu 1 312 -1 4980 201 38 28 chr9 27460865 27461046 -114810398 + L1MA10 LINE L1 5448 5626 -708 3687 126 11 28 chr9 27461046 27461656 -114809788 - MER4A LTR ERV1 0 600 1 4980 201 38 28 chr9 27461656 27462318 -114809126 + L1MA10 LINE L1 5626 6323 -11 296 195 58 35 chr9 27462425 27462512 -114808932 + L1MEc LINE L1 1789 1877 -4519 * 1968 257 65 48 chr9 27462510 27463253 -114808191 - L1MEc LINE L1 -5608 788 34 28 29 0 0 chr9 27464313 27464348 -114807096 + AT_rich Low_complexity Low_complexity 1 35 0 304 244 12 0 chr9 27465087 27465169 -114806275 - L1MC4a LINE L1 -1875 5933 5851 268 274 42 32 chr9 27465857 27465952 -114805492 + L2 LINE L2 3208 3303 -10 21 0 0 0 chr9 27466937 27466958 -114804486 + AT_rich Low_complexity Low_complexity 1 21 0 425 338 87 14 chr9 27467476 27467683 -114803761 - MIR SINE MIR -3 259 38 557 259 85 36 chr9 27467758 27467980 -114803464 - MIR SINE MIR 0 262 31 825 185 67 0 chr9 27468050 27468228 -114803216 - L1MA4 LINE L1 0 6300 6111 487 282 106 12 chr9 27468250 27468420 -114803024 - MIR SINE MIR 0 262 77 269 365 73 7 chr9 27468869 27469006 -114802438 + MIR SINE MIR 51 196 -66 641 246 63 34 chr9 27469145 27469352 -114802092 + MIR SINE MIR 50 262 0 2554 50 0 0 chr9 27474130 27474430 -114797014 - AluY SINE Alu -9 302 3 245 299 43 22 chr9 27474869 27475053 -114796391 - L1M4 LINE L1 -3528 2618 2431 21 82 0 0 chr9 27475466 27475515 -114795929 + AT_rich Low_complexity Low_complexity 1 49 0 226 213 64 32 chr9 27475521 27475615 -114795829 - MER103 DNA DNA -4 162 66 1027 181 6 0 chr9 27476767 27476938 -114794506 + MER2 DNA MER2_type 2 173 -172 183 162 0 0 chr9 27477004 27477041 -114794403 + T-rich Low_complexity Low_complexity 1 37 0 1048 179 0 6 chr9 27477048 27477227 -114794217 - AluJb SINE Alu -124 188 11 407 195 24 12 chr9 27477264 27477346 -114794098 + MER2 DNA MER2_type 263 345 0 489 301 76 65 chr9 27477871 27478147 -114793297 + MLT1K LTR MaLR 310 588 0 422 344 23 0 chr9 27479625 27479756 -114791688 - MIR3 SINE MIR -11 197 64 22 0 0 0 chr9 27481819 27481841 -114789603 + AT_rich Low_complexity Low_complexity 1 22 0 336 148 0 0 chr9 27483206 27483267 -114788177 + (TC)n Simple_repeat Simple_repeat 1 61 0 7080 6 0 0 chr9 27483625 27484418 -114787026 - L1HS LINE L1 0 6155 5363 1962 29 0 0 chr9 27484417 27484662 -114786782 + L1HS LINE L1 5106 5350 -796 * 350 130 19 0 chr9 27484846 27484900 -114786544 - Charlie8 DNA MER1_type -1003 1414 1360 2145 97 4 0 chr9 27485003 27485282 -114786162 - AluSg SINE Alu -28 282 3 204 314 186 17 chr9 27485850 27485968 -114785476 + MIR3 SINE MIR 34 171 -37 240 304 169 30 chr9 27486127 27486364 -114785080 - L2 LINE L2 -1020 2294 2025 222 128 0 0 chr9 27586856 27586895 -114684549 + (TTCC)n Simple_repeat Simple_repeat 1 39 0 420 264 28 9 chr9 27586907 27587013 -114684431 - L2 LINE L2 -14 3299 3192 191 373 144 5 chr9 27587070 27587271 -114684173 + L2 LINE L2 2612 2840 -474 207 368 11 0 chr9 27587364 27587459 -114683985 + L2 LINE L2 2946 3041 -231 2150 113 3 0 chr9 27587784 27588077 -114683367 - AluSg SINE Alu -16 294 1 22 0 0 0 chr9 27588086 27588108 -114683336 + AT_rich Low_complexity Low_complexity 1 22 0 367 273 49 55 chr9 27588658 27588841 -114682603 + L3 LINE CR1 1253 1434 -143 21 36 0 0 chr9 27589269 27589297 -114682147 + AT_rich Low_complexity Low_complexity 1 28 0 970 251 69 30 chr9 27591017 27592003 -114679441 + L1MC4 LINE L1 5803 6847 -1195 3600 252 56 28 chr9 27592156 27593306 -114678138 + L1MC4a LINE L1 6627 7808 0 355 310 50 50 chr9 27593676 27593818 -114677626 + L1M4 LINE L1 2337 2481 -3665 968 237 7 106 chr9 27593818 27594223 -114677221 - MLT1A1 LTR MaLR 0 365 1 355 310 50 50 chr9 27594223 27594322 -114677122 + L1M4 LINE L1 2480 2578 -3568 28 29 0 0 chr9 27594957 27594992 -114676452 + AT_rich Low_complexity Low_complexity 1 35 0 2075 114 0 7 chr9 27595170 27595467 -114675977 - AluSc SINE Alu -14 295 1 1923 265 74 23 chr9 27598453 27599295 -114672149 + L1ME3A LINE L1 5258 6122 -48 764 132 18 0 chr9 27599438 27599552 -114671892 - MSTD LTR MaLR 0 396 281 35 24 0 0 chr9 27600013 27600055 -114671389 + AT_rich Low_complexity Low_complexity 1 42 0 2249 95 7 0 chr9 27600415 27600721 -114670723 + AluY SINE Alu 1 308 -3 334 320 35 23 chr9 27602004 27602260 -114669184 - MIR SINE MIR -2 260 2 779 242 166 39 chr9 27602922 27603504 -114667940 - LTR50 LTR ERVL 0 795 43 1188 155 183 68 chr9 27603504 27603826 -114667618 + THE1C LTR MaLR 4 373 -2 207 0 0 0 chr9 27603912 27603935 -114667509 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 834 345 92 22 chr9 27604330 27604478 -114666966 - L2 LINE L2 -4 3309 3173 1021 205 149 13 chr9 27604478 27604780 -114666664 - MER2 DNA MER2_type 0 344 2 834 345 92 22 chr9 27604780 27605147 -114666297 - L2 LINE L2 -140 3173 2764 477 296 44 6 chr9 27605293 27605452 -114665992 + MLT1I LTR MaLR 243 407 -2 288 91 0 0 chr9 27606234 27606278 -114665166 + (TC)n Simple_repeat Simple_repeat 1 44 0 1365 176 15 27 chr9 27606282 27606543 -114664901 - AluJo SINE Alu -30 282 25 197 275 145 0 chr9 27606609 27606678 -114664766 + L2 LINE L2 3185 3263 -9 183 80 0 0 chr9 27606679 27606704 -114664740 + (TAAAA)n Simple_repeat Simple_repeat 1 25 0 191 265 176 59 chr9 27608433 27608569 -114662875 + MIR SINE MIR 1 152 -110 218 205 0 0 chr9 27609099 27609138 -114662306 + GA-rich Low_complexity Low_complexity 2 40 0 290 302 43 17 chr9 27609841 27609957 -114661487 - MIR SINE MIR -68 194 76 204 315 0 51 chr9 27609991 27610102 -114661342 - MIR SINE MIR -100 108 8 2377 59 0 3 chr9 27610284 27610587 -114660857 + AluY SINE Alu 1 302 -9 4987 204 20 9 chr9 27610623 27611694 -114659750 - Tigger6a DNA MER2_type 0 1083 1 21 0 0 0 chr9 27611787 27611808 -114659636 + AT_rich Low_complexity Low_complexity 1 21 0 788 201 0 0 chr9 27611866 27612005 -114659439 + FRAM SINE Alu 8 146 -30 383 294 8 25 chr9 27612333 27612452 -114658992 - MIR SINE MIR -61 201 85 491 355 150 24 chr9 27613373 27614566 -114656878 + L2 LINE L2 1430 2772 -542 185 311 144 0 chr9 27614861 27614951 -114656493 + L2 LINE L2 2950 3052 -261 1777 150 3 29 chr9 27614954 27615260 -114656184 + AluSx SINE Alu 1 298 -14 619 280 57 14 chr9 27617670 27617893 -114653551 + MIR SINE MIR 16 245 -17 307 271 10 21 chr9 27618109 27618205 -114653239 - MLT1H1 LTR MaLR -43 512 418 289 288 12 12 chr9 27618434 27618514 -114652930 - MLT1H1 LTR MaLR -374 181 102 1979 103 43 0 chr9 27618567 27618849 -114652595 + AluSg SINE Alu 5 298 -12 10031 79 3 2 chr9 27619081 27620432 -114651012 + L1P LINE L1 6 1357 -4789 2406 53 0 3 chr9 27620954 27621256 -114650188 + AluY SINE Alu 1 301 -10 286 257 64 46 chr9 27621346 27621455 -114649989 + MER110-int LTR ERV1 1790 1900 -2747 285 292 0 0 chr9 27621492 27621564 -114649880 + MER110-int LTR ERV1 2000 2071 -2576 1173 323 72 20 chr9 27621747 27622258 -114649186 + MER110-int LTR ERV1 2254 2791 -1856 305 159 16 0 chr9 27622600 27622663 -114648781 + GA-rich Low_complexity Low_complexity 3 66 0 858 213 96 106 chr9 27622779 27623376 -114648068 + LTR49 LTR ERV1 5 595 0 242 345 69 9 chr9 27623454 27623570 -114647874 - MER5A DNA MER1_type -64 125 3 1349 269 76 21 chr9 27623791 27624318 -114647126 + LTR38 LTR ERV1 1 556 0 24 0 0 0 chr9 27624555 27624579 -114646865 + AT_rich Low_complexity Low_complexity 1 24 0 901 202 30 103 chr9 27625350 27625652 -114645792 - MER67D LTR ERV1 -234 280 1 353 318 47 12 chr9 27626697 27626867 -114644577 + MIR SINE MIR 42 210 -52 369 43 0 0 chr9 27627272 27627319 -114644125 + (TG)n Simple_repeat Simple_repeat 1 47 0 1346 175 18 119 chr9 27627752 27628151 -114643293 - MLT1A1 LTR MaLR 0 365 13 698 205 16 0 chr9 27628169 27628296 -114643148 + Tigger1 DNA MER2_type 15 143 -2275 1024 163 48 14 chr9 27628299 27628508 -114642936 + Tigger1 DNA MER2_type 2203 2418 0 22 56 0 0 chr9 27629004 27629040 -114642404 + AT_rich Low_complexity Low_complexity 1 36 0 199 314 43 14 chr9 27630157 27630227 -114641217 + MER5B DNA MER1_type 3 74 -104 6995 32 0 2 chr9 27630525 27631361 -114640083 - L1PA3 LINE L1 0 6155 5322 280 77 0 0 chr9 27631339 27631378 -114640066 + L1P LINE L1 2680 2718 -3428 * 393 264 0 0 chr9 27631475 27631562 -114639882 + MER81 DNA DNA 1 87 -27 261 182 45 27 chr9 27632468 27632578 -114638866 + (CATATA)n Simple_repeat Simple_repeat 2 113 0 539 279 110 43 chr9 27632611 27632796 -114638648 - L1ME LINE L1 -519 5645 5474 222 37 0 0 chr9 27632796 27632823 -114638621 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2254 92 0 0 chr9 27632826 27633118 -114638326 - AluSg SINE Alu -18 292 1 539 279 110 43 chr9 27633118 27633570 -114637874 - L1ME LINE L1 -691 5473 4962 2152 201 50 7 chr9 27633570 27634013 -114637431 + MLT1C LTR MaLR 1 462 -5 1972 151 22 22 chr9 27634073 27634437 -114637007 - THE1B LTR MaLR 0 364 1 331 300 15 10 chr9 27634760 27634960 -114636484 - L1ME LINE L1 -1542 4604 4404 21 36 0 0 chr9 27636375 27636403 -114635041 + AT_rich Low_complexity Low_complexity 1 28 0 35 54 0 0 chr9 27636603 27636659 -114634785 + AT_rich Low_complexity Low_complexity 1 56 0 260 328 46 30 chr9 27637210 27637341 -114634103 - L3b LINE CR1 -4 1579 1447 26 30 0 0 chr9 27637701 27637734 -114633710 + AT_rich Low_complexity Low_complexity 1 33 0 198 403 14 14 chr9 27637858 27638002 -114633442 + L2 LINE L2 2307 2450 -864 491 315 107 0 chr9 27638033 27638211 -114633233 - MIR SINE MIR -38 224 28 381 258 177 0 chr9 27638430 27638554 -114632890 - MIR SINE MIR -6 256 111 24 0 0 0 chr9 27639904 27639928 -114631516 + AT_rich Low_complexity Low_complexity 1 24 0 330 266 138 9 chr9 27640636 27640745 -114630699 - L2 LINE L2 -24 3289 3167 284 129 71 24 chr9 27643298 27643383 -114628061 + CT-rich Low_complexity Low_complexity 3 91 0 1297 222 116 6 chr9 27643549 27643860 -114627584 + MLT1B-int LTR MaLR 955 1299 -72 552 331 62 6 chr9 27643834 27644012 -114627432 - L1MDa LINE L1 -5735 805 618 * 293 225 67 22 chr9 27644035 27644124 -114627320 - L1MDa LINE L1 -6069 471 379 * 355 196 11 22 chr9 27644121 27644213 -114627231 + MLT1B-int LTR MaLR 1644 1734 -1 1528 209 59 17 chr9 27644214 27644569 -114626875 + MLT1B LTR MaLR 1 370 -20 6337 243 82 31 chr9 27644581 27646920 -114624524 + L1MDa LINE L1 123 2718 -3822 1147 279 56 17 chr9 27647026 27647489 -114623955 + L1MDa LINE L1 3313 3756 -2784 1382 184 26 43 chr9 27647489 27647793 -114623651 - AluJo SINE Alu -13 299 1 1147 279 56 17 chr9 27647793 27647806 -114623638 + L1MDa LINE L1 3756 3767 -2773 354 23 0 0 chr9 27647806 27647849 -114623595 + (CA)n Simple_repeat Simple_repeat 2 44 0 1147 279 56 17 chr9 27647849 27648010 -114623434 + L1MDa LINE L1 3767 3976 -2564 830 327 35 53 chr9 27648025 27648477 -114622967 + L1M2a LINE L1 1 444 -6724 * 3235 266 84 31 chr9 27648451 27650402 -114621042 + L1M2a LINE L1 1568 3222 -3947 23338 152 11 70 chr9 27650428 27657004 -114614440 + L1PA8 LINE L1 1 6487 0 3119 258 88 6 chr9 27656999 27658096 -114613348 + L1M2a LINE L1 3223 4409 -2758 * 270 118 0 227 chr9 27658097 27658207 -114613237 + MLT2C2 LTR ERVL 407 464 0 317 327 59 56 chr9 27658217 27658523 -114612921 - HAL1 LINE L1 -952 1555 1249 384 248 32 89 chr9 27658583 27658740 -114612704 - MLT1I LTR MaLR -235 174 27 482 329 98 37 chr9 27659100 27659510 -114611934 - HAL1 LINE L1 -2044 463 29 29 47 0 0 chr9 27659777 27659820 -114611624 + AT_rich Low_complexity Low_complexity 1 43 0 220 341 80 0 chr9 27659881 27659969 -114611475 + L2 LINE L2 3185 3279 -34 553 327 179 35 chr9 27660350 27660470 -114610974 - L2 LINE L2 -5 3308 3207 3647 109 79 0 chr9 27660470 27661028 -114610416 - LTR43 LTR ERV1 0 602 1 553 327 179 35 chr9 27661028 27661423 -114610021 - L2 LINE L2 -106 3207 2722 308 293 29 69 chr9 27661723 27661897 -114609547 + L1M2a LINE L1 4862 5028 -2139 516 237 258 42 chr9 27661972 27662027 -114609417 + MLT1E1 LTR MaLR 3 45 -609 315 0 0 0 chr9 27662027 27662062 -114609382 + (CA)n Simple_repeat Simple_repeat 2 36 0 516 237 258 42 chr9 27662062 27662196 -114609248 + MLT1E1 LTR MaLR 45 233 -421 484 184 10 0 chr9 27662202 27662300 -114609144 + MLT1E3 LTR MaLR 526 624 0 209 320 148 23 chr9 27662583 27662839 -114608605 + L2 LINE L2 3020 3307 -6 1999 184 6 0 chr9 27665512 27665876 -114605568 - MER47A DNA MER2_type 0 366 1 215 173 19 0 chr9 27666553 27666605 -114604839 + (CA)n Simple_repeat Simple_repeat 2 54 0 239 266 101 46 chr9 27667717 27667826 -114603618 + MIR SINE MIR 110 224 -38 420 248 39 39 chr9 27668245 27668398 -114603046 - MER5A DNA MER1_type 0 189 37 320 301 46 64 chr9 27668247 27668420 -114603024 + MER5A DNA MER1_type 17 186 -3 * 23 0 0 0 chr9 27669590 27669613 -114601831 + AT_rich Low_complexity Low_complexity 1 23 0 300 283 54 42 chr9 27669709 27669909 -114601535 + MIR SINE MIR 15 221 -41 309 51 0 0 chr9 27670218 27670257 -114601187 + (CA)n Simple_repeat Simple_repeat 2 40 0 274 146 0 0 chr9 27671794 27671835 -114599609 - tRNA-Lys-AAG tRNA tRNA -34 42 2 444 218 164 72 chr9 27672072 27672407 -114599037 + L1ME3A LINE L1 5735 6100 -70 2200 105 0 7 chr9 27672778 27673073 -114598371 - AluSg SINE Alu -17 293 1 257 318 39 84 chr9 27673102 27673256 -114598188 + L2 LINE L2 3124 3270 -2 246 48 0 0 chr9 27673501 27673543 -114597901 - LTR66 LTR ERVL -171 439 398 246 48 0 0 chr9 27673511 27673553 -114597891 + LTR66 LTR ERVL 398 439 -171 327 311 0 0 chr9 27673561 27673651 -114597793 + L1MC4 LINE L1 6614 6703 -1339 * 335 300 0 0 chr9 27673621 27673651 -114597793 + L1MC4 LINE L1 6614 6643 -1399 225 154 0 0 chr9 27673651 27673690 -114597754 + (TG)n Simple_repeat Simple_repeat 1 39 0 429 70 0 0 chr9 27673690 27673747 -114597697 + (TA)n Simple_repeat Simple_repeat 2 58 0 335 300 0 0 chr9 27673690 27673711 -114597733 + L1MC4 LINE L1 6642 6703 -1339 27 49 0 0 chr9 27675840 27675881 -114595563 + AT_rich Low_complexity Low_complexity 1 41 0 357 295 84 54 chr9 27676239 27676500 -114594944 - L1MDa LINE L1 -4702 1838 1570 1196 248 114 72 chr9 27676534 27677102 -114594342 - MLT1E2 LTR MaLR -31 594 2 1259 264 88 35 chr9 27677108 27677736 -114593708 - L1MDa LINE L1 -5105 1616 956 472 300 8 0 chr9 27677750 27677880 -114593564 - L2 LINE L2 -947 2367 2237 835 215 58 6 chr9 27678015 27678187 -114593257 + MER5A DNA MER1_type 7 187 -2 211 309 41 31 chr9 27678233 27678330 -114593114 - L2 LINE L2 -243 3029 2932 1468 111 214 12 chr9 27679520 27679772 -114591672 - AluSg1 SINE Alu -6 303 1 333 318 97 41 chr9 27681712 27681944 -114589500 + MLT1L LTR MaLR 201 465 -150 1724 138 34 18 chr9 27681944 27682271 -114589173 + L1MA9 LINE L1 5979 6310 -2 333 318 97 41 chr9 27682271 27682431 -114589013 + MLT1L LTR MaLR 465 615 0 1398 245 50 67 chr9 27683244 27683799 -114587645 - L1ME3 LINE L1 -14 6148 5603 577 258 0 7 chr9 27683851 27684002 -114587442 - L1ME3 LINE L1 -1292 4854 4705 439 240 13 20 chr9 27684081 27684231 -114587213 - L1ME3 LINE L1 -1567 4579 4431 2613 45 0 0 chr9 27684246 27684557 -114586887 - AluY SINE Alu 0 311 1 334 279 81 54 chr9 27684565 27684787 -114586657 - L1ME3 LINE L1 -1979 4167 3940 597 329 35 16 chr9 27684842 27685155 -114586289 + L1MEc LINE L1 92 410 -5986 1579 245 96 10 chr9 27685239 27685729 -114585715 + LTR48B LTR ERV1 108 639 -5 1000 219 76 106 chr9 27685750 27685801 -114585643 - MLT1A2 LTR MaLR -5 369 318 1969 161 21 15 chr9 27685801 27686136 -114585308 + MER1B DNA MER1_type 1 337 0 1000 219 76 106 chr9 27686136 27686441 -114585003 - MLT1A2 LTR MaLR -56 318 24 3870 222 19 9 chr9 27687878 27688885 -114582559 + L1 LINE L1 2861 3877 -2269 5693 138 196 9 chr9 27689005 27690119 -114581325 - L1PBa LINE L1 -4903 1960 639 1100 190 0 0 chr9 27690116 27690316 -114581128 - L1PBa LINE L1 -6661 202 3 * 22 35 0 0 chr9 27691093 27691122 -114580322 + AT_rich Low_complexity Low_complexity 1 29 0 2850 151 86 10 chr9 27692140 27692843 -114578601 - L1PBa LINE L1 -3733 3129 2372 1635 197 45 28 chr9 27693323 27693473 -114577971 + L1M1 LINE L1 2890 3036 -4529 1447 164 80 52 chr9 27693473 27693838 -114577606 - THE1C LTR MaLR 0 375 1 1635 197 45 28 chr9 27693838 27694403 -114577041 + L1M1 LINE L1 3036 3939 -3626 9431 130 30 6 chr9 27694503 27695929 -114575515 - THE1B-int LTR MaLR -120 1460 1 1942 175 11 16 chr9 27695929 27696295 -114575149 - THE1B LTR MaLR 0 364 1 1929 174 0 0 chr9 27696885 27697196 -114574248 - AluJo SINE Alu -1 311 1 1961 174 93 53 chr9 27697306 27697698 -114573746 - MER67D LTR ERV1 0 514 96 1616 122 122 7 chr9 27697698 27697969 -114573475 + AluSx SINE Alu 1 302 0 1961 174 93 53 chr9 27697969 27698070 -114573374 - MER67D LTR ERV1 -418 96 1 302 312 136 7 chr9 27698152 27698306 -114573138 - MIR SINE MIR -84 178 5 338 313 68 0 chr9 27698624 27698787 -114572657 - MIR SINE MIR 0 262 89 368 258 0 10 chr9 27698933 27699030 -114572414 + MER34 LTR ERV1 1 96 -446 1598 227 91 28 chr9 27699035 27699498 -114571946 + LTR48B LTR ERV1 151 642 -2 24 85 0 0 chr9 27699690 27699749 -114571695 + AT_rich Low_complexity Low_complexity 1 59 0 622 237 131 44 chr9 27699913 27700415 -114571029 + LTR48 LTR ERV1 157 787 0 210 71 0 0 chr9 27700516 27700544 -114570900 + (A)n Simple_repeat Simple_repeat 1 28 0 299 289 22 0 chr9 27700763 27700853 -114570591 + MLT1I LTR MaLR 19 110 -299 388 254 192 8 chr9 27700933 27701063 -114570381 + MER5A DNA MER1_type 30 183 -6 548 240 101 29 chr9 27701085 27701293 -114570151 + MLT1I LTR MaLR 186 408 -1 379 281 79 0 chr9 27702255 27702369 -114569075 - L2 LINE L2 0 3313 3191 4887 89 43 98 chr9 27703307 27704181 -114567263 - LTR12 LTR ERV1 0 826 1 560 306 81 67 chr9 27704847 27705144 -114566300 - LTR16C LTR ERVL 0 491 191 6719 70 3 26 chr9 27705154 27706319 -114565125 - L1PA7 LINE L1 0 6154 5013 2319 95 0 0 chr9 27706319 27706614 -114564830 - AluY SINE Alu -14 297 3 6719 70 3 26 chr9 27706614 27707137 -114564307 - L1PA7 LINE L1 -1141 5013 4479 995 188 53 41 chr9 27707484 27707803 -114563641 - MER33 DNA MER1_type -1 323 1 1420 263 126 17 chr9 27708169 27708636 -114562808 + MLT1F LTR MaLR 25 542 0 428 273 50 25 chr9 27709820 27709981 -114561463 - MIR SINE MIR -90 172 8 1597 52 10 0 chr9 27710123 27710316 -114561128 + AluY SINE Alu 99 293 -18 2093 130 3 0 chr9 27710850 27711150 -114560294 - AluJb SINE Alu -7 305 5 377 302 37 73 chr9 27712145 27712473 -114558971 + MLT1H LTR MaLR 53 368 -181 1838 107 0 0 chr9 27712692 27712955 -114558489 - AluSx SINE Alu 0 310 48 21 0 0 0 chr9 27713024 27713045 -114558399 + AT_rich Low_complexity Low_complexity 1 21 0 583 319 117 36 chr9 27714220 27714580 -114556864 - L2 LINE L2 -5 3308 2920 233 212 106 15 chr9 27714870 27714936 -114556508 - LTR33A LTR ERVL 0 523 452 229 240 106 87 chr9 27714997 27715101 -114556343 - MLT2E LTR ERVL -491 137 32 2611 310 74 23 chr9 27715536 27715651 -114555793 - ERVL LTR ERVL -431 5333 5225 1973 176 12 6 chr9 27715651 27715997 -114555447 + MER7A DNA MER2_type 1 346 0 2611 310 74 23 chr9 27715997 27717013 -114554431 - ERVL LTR ERVL -539 5225 4144 1944 181 109 8 chr9 27717264 27717739 -114553705 - L1MA9 LINE L1 -1 6311 5789 6400 141 34 13 chr9 27717748 27719206 -114552238 - L1MA2 LINE L1 0 7723 6243 981 198 28 4 chr9 27719198 27719445 -114551999 - L1MA2 LINE L1 -2972 4593 4341 * 2847 131 27 17 chr9 27719479 27719959 -114551485 - L1PA13 LINE L1 0 6163 5679 847 76 8 0 chr9 27719959 27720077 -114551367 + L1P4 LINE L1 5609 5727 -436 * 17972 171 67 29 chr9 27720074 27721823 -114549621 - L1MA2 LINE L1 -3215 4350 2669 1966 122 15 0 chr9 27721823 27722094 -114549350 + AluSx SINE Alu 2 276 -36 17972 171 67 29 chr9 27722094 27724516 -114546928 - L1MA2 LINE L1 -4896 2669 15 3853 178 42 11 chr9 27724532 27725812 -114545632 - L1M2 LINE L1 -514 5798 4486 1772 170 3 3 chr9 27725816 27726104 -114545340 - AluSx SINE Alu -24 288 1 14459 162 41 14 chr9 27726489 27729135 -114542309 - Tigger2 DNA MER2_type 0 2718 2 213 180 16 16 chr9 27729141 27729202 -114542242 + (TA)n Simple_repeat Simple_repeat 1 61 0 1326 315 55 49 chr9 27729202 27729913 -114541531 - ERVL LTR ERVL -2180 3474 2760 2308 81 7 3 chr9 27731636 27731946 -114539498 + AluY SINE Alu 1 311 0 180 152 0 0 chr9 27732238 27732271 -114539173 + (TAA)n Simple_repeat Simple_repeat 1 33 0 26 0 0 0 chr9 27732420 27732446 -114538998 + AT_rich Low_complexity Low_complexity 1 26 0 586 349 56 45 chr9 27732980 27733358 -114538086 - L2 LINE L2 -1 3271 2890 229 333 42 33 chr9 27733880 27734000 -114537444 - MIR SINE MIR -10 252 132 22 35 0 0 chr9 27734801 27734830 -114536614 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr9 27736865 27736887 -114534557 + AT_rich Low_complexity Low_complexity 1 22 0 325 224 82 12 chr9 27737433 27737518 -114533926 - MER91C DNA MER1_type -1 139 49 271 284 71 57 chr9 27737839 27737980 -114533464 - MIR SINE MIR -109 153 11 2612 165 8 4 chr9 27738900 27739373 -114532071 + L1MA5 LINE L1 5826 6300 0 243 170 0 0 chr9 27741019 27741066 -114530378 + A-rich Low_complexity Low_complexity 1 47 0 39 22 0 0 chr9 27741919 27741965 -114529479 + AT_rich Low_complexity Low_complexity 1 46 0 978 303 41 16 chr9 27742323 27742686 -114528758 + L1MEd LINE L1 11 382 -5737 535 315 38 40 chr9 27742797 27743168 -114528276 + L1MEd LINE L1 532 901 -5218 584 134 21 10 chr9 27743255 27743352 -114528092 + MER4A LTR ERV1 1 98 -566 1837 139 6 24 chr9 27743352 27743703 -114527741 + MER4A LTR ERV1 261 664 0 10518 123 193 130 chr9 27743706 27746336 -114525108 + MER4A-int LTR ERV1 1 2906 -3692 193 28 0 56 chr9 27746336 27746372 -114525072 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 10518 123 193 130 chr9 27746372 27747214 -114524230 + MER4A-int LTR ERV1 2906 3693 -2905 * 15023 112 44 17 chr9 27747197 27749791 -114521653 + MER4A-int LTR ERV1 3838 6593 -5 585 143 0 0 chr9 27749805 27749896 -114521548 + MER4A LTR ERV1 8 98 -566 1892 131 3 23 chr9 27749896 27750238 -114521206 + MER4A LTR ERV1 263 664 0 505 270 82 30 chr9 27750239 27750472 -114520972 + L1MEd LINE L1 985 1229 -4890 1488 192 0 55 chr9 27750516 27750824 -114520620 - AluJo SINE Alu -21 291 1 2093 77 7 0 chr9 27751110 27751396 -114520048 - L1PA7 LINE L1 -3 6151 5864 2188 62 3 0 chr9 27751396 27751684 -114519760 + L1P LINE L1 4369 4657 -1489 183 260 0 20 chr9 27752735 27752785 -114518659 + MIR SINE MIR 100 148 -114 289 371 51 69 chr9 27752869 27753262 -114518182 + L2 LINE L2 2809 3194 -78 181 315 174 0 chr9 27754610 27754702 -114516742 + L2 LINE L2 3156 3263 -9 249 250 0 0 chr9 27754813 27754865 -114516579 + MER58A DNA MER1_type 28 79 -28 487 248 9 0 chr9 27754906 27755015 -114516429 + MER58A DNA MER1_type 82 191 -33 403 332 104 5 chr9 27755254 27755447 -114515997 + MIR SINE MIR 48 259 -3 22 0 0 0 chr9 27755642 27755664 -114515780 + AT_rich Low_complexity Low_complexity 1 22 0 1306 227 82 43 chr9 27756298 27756738 -114514706 + MSTB2 LTR MaLR 1 457 0 23 33 0 0 chr9 27756781 27756811 -114514633 + AT_rich Low_complexity Low_complexity 1 30 0 891 240 47 11 chr9 27756997 27757272 -114514172 + HAL1 LINE L1 2036 2320 -187 1557 185 39 13 chr9 27757274 27757582 -114513862 + L1PB4 LINE L1 5841 6156 0 226 152 0 0 chr9 27757590 27757636 -114513808 + HAL1 LINE L1 2306 2351 -156 1339 200 0 8 chr9 27757737 27757982 -114513462 + AluJb SINE Alu 4 246 -66 189 74 0 0 chr9 27758005 27758032 -114513412 + (GAAAA)n Simple_repeat Simple_repeat 3 29 0 22 35 0 0 chr9 27758061 27758090 -114513354 + AT_rich Low_complexity Low_complexity 1 29 0 243 0 0 0 chr9 27758684 27758711 -114512733 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 21 36 0 0 chr9 27759360 27759388 -114512056 + AT_rich Low_complexity Low_complexity 1 28 0 221 339 60 120 chr9 27760348 27760799 -114510645 + L2 LINE L2 2826 3249 -23 580 242 16 0 chr9 27761121 27761245 -114510199 - FLAM_A SINE Alu -6 127 2 2214 104 0 0 chr9 27761251 27761548 -114509896 - AluY SINE Alu -14 297 1 606 239 0 22 chr9 27761569 27761707 -114509737 - FLAM_C SINE Alu -8 135 1 258 331 47 31 chr9 27761850 27761977 -114509467 + L2 LINE L2 3184 3312 -1 1623 93 161 4 chr9 27763733 27763981 -114507463 - AluSg1 SINE Alu -20 289 3 268 204 0 68 chr9 27764487 27764565 -114506879 + T-rich Low_complexity Low_complexity 1 83 -13 3049 169 31 44 chr9 27764565 27764758 -114506686 - L1PB3 LINE L1 -1 6153 5959 1605 171 190 11 chr9 27764758 27765121 -114506323 - MSTA LTR MaLR 0 428 1 8288 162 11 55 chr9 27765121 27766771 -114504673 - MSTA-int LTR MaLR 0 1580 3 1746 171 140 11 chr9 27766773 27767152 -114504292 - MSTA LTR MaLR 0 428 1 3049 169 31 44 chr9 27767152 27767634 -114503810 - L1PB3 LINE L1 -195 5959 5483 268 204 0 68 chr9 27767634 27767658 -114503786 + T-rich Low_complexity Low_complexity 83 96 0 6965 141 22 24 chr9 27768037 27769449 -114501995 - L1MA2 LINE L1 0 6304 4902 2900 115 9 0 chr9 27769449 27769883 -114501561 - L1PB2 LINE L1 -2 6149 5712 6965 141 22 24 chr9 27769883 27770657 -114500787 - L1MA2 LINE L1 -1402 4902 4128 31 26 0 0 chr9 27771046 27771084 -114500360 + AT_rich Low_complexity Low_complexity 1 38 0 216 356 9 17 chr9 27771290 27771405 -114500039 - MIR SINE MIR 0 262 149 278 300 97 3 chr9 27772734 27772873 -114498571 + MIR SINE MIR 6 152 -62 473 264 58 80 chr9 27773069 27773395 -114498049 - HAL1b LINE L1 -814 534 216 560 247 0 92 chr9 27773512 27773739 -114497705 + L1MC4 LINE L1 7816 8021 -21 2114 119 0 13 chr9 27773747 27774059 -114497385 - AluSc SINE Alu -1 308 1 302 341 47 0 chr9 27774160 27774289 -114497155 - MIR3 SINE MIR -14 194 60 580 278 98 0 chr9 27774377 27774550 -114496894 - MER58C DNA MER1_type 0 215 26 3191 222 65 42 chr9 27774765 27775468 -114495976 + L1MDb LINE L1 6 691 -5715 2142 130 16 0 chr9 27775468 27775775 -114495669 + AluSx SINE Alu 1 312 0 3191 222 65 42 chr9 27775775 27776630 -114494814 + L1MDb LINE L1 691 1732 -4674 1563 164 44 11 chr9 27776630 27776926 -114494518 + AluJb SINE Alu 1 305 0 3191 222 65 42 chr9 27776926 27777195 -114494249 + L1MDb LINE L1 1732 1993 -4413 520 258 65 41 chr9 27777203 27777494 -114493950 + L1MDb LINE L1 2071 2368 -4038 230 225 0 0 chr9 27777497 27777537 -114493907 - L1MD2 LINE L1 -297 6062 6023 * 595 236 48 36 chr9 27777536 27777786 -114493658 - L1M4 LINE L1 -1816 4330 4078 333 274 62 18 chr9 27778111 27778224 -114493220 - L2 LINE L2 -7 3306 3189 3589 179 38 95 chr9 27778345 27779414 -114492030 - L1MA9 LINE L1 -33 6279 5272 21 0 0 0 chr9 27779813 27779834 -114491610 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr9 27780724 27780752 -114490692 + AT_rich Low_complexity Low_complexity 1 28 0 204 345 103 9 chr9 27781568 27781684 -114489760 + L2 LINE L2 3187 3313 0 24 0 0 0 chr9 27782222 27782246 -114489198 + AT_rich Low_complexity Low_complexity 1 24 0 180 306 16 0 chr9 27782327 27782389 -114489055 + MIR SINE MIR 92 154 -108 2406 61 0 6 chr9 27782436 27782748 -114488696 + AluY SINE Alu 1 310 -1 1629 208 17 0 chr9 27782927 27783225 -114488219 - AluJb SINE Alu -9 303 1 585 79 83 0 chr9 27783270 27783539 -114487905 + (TA)n Simple_repeat Simple_repeat 1 291 0 338 101 76 8 chr9 27783550 27783669 -114487775 + (TA)n Simple_repeat Simple_repeat 2 128 0 4610 99 5 0 chr9 27783700 27784348 -114487096 + L1PA13 LINE L1 5494 6144 -19 191 267 151 12 chr9 27784387 27784473 -114486971 + MIR SINE MIR 164 261 -1 29 47 0 0 chr9 27784841 27784884 -114486560 + AT_rich Low_complexity Low_complexity 1 43 0 202 189 0 38 chr9 27785765 27785818 -114485626 + A-rich Low_complexity Low_complexity 6 56 0 319 301 26 59 chr9 27785829 27785982 -114485462 - MIR SINE MIR -67 195 48 219 302 135 24 chr9 27786033 27786159 -114485285 - L2 LINE L2 -38 3234 3095 347 363 119 12 chr9 27786373 27786533 -114484911 - MIR SINE MIR -65 197 21 290 276 58 35 chr9 27787053 27787140 -114484304 - L2 LINE L2 -37 3235 3147 408 309 56 8 chr9 27787637 27787763 -114483681 - L2 LINE L2 -12 3260 3129 425 289 0 0 chr9 27787895 27787992 -114483452 - MER5A DNA MER1_type -83 106 10 274 254 70 81 chr9 27788208 27788393 -114483051 - MER5A DNA MER1_type 0 189 7 203 360 122 45 chr9 27788418 27788834 -114482610 - L2 LINE L2 -569 2745 2363 2120 145 14 19 chr9 27788834 27789200 -114482244 - THE1B LTR MaLR 0 364 1 10947 102 28 8 chr9 27789202 27790749 -114480695 - THE1B-int LTR MaLR -2 1578 1 2275 139 8 16 chr9 27790749 27791116 -114480328 - THE1B LTR MaLR 0 364 1 203 360 122 45 chr9 27791116 27791161 -114480283 - L2 LINE L2 -950 2364 2244 2119 105 0 41 chr9 27791406 27791720 -114479724 + AluSq SINE Alu 1 301 -12 464 274 156 14 chr9 27792312 27792600 -114478844 + L1ME4a LINE L1 5746 6074 -47 798 226 54 5 chr9 27792775 27792961 -114478483 - MER72 LTR ERV1 -527 195 1 2602 138 24 0 chr9 27793925 27794339 -114477105 - MSTA LTR MaLR -4 424 1 725 271 10 10 chr9 27794662 27794854 -114476590 - MIR SINE MIR 0 262 71 180 365 81 14 chr9 27794861 27795009 -114476435 - MIR SINE MIR -57 205 48 2353 81 3 0 chr9 27795072 27795370 -114476074 + AluY SINE Alu 1 299 -12 3753 155 58 9 chr9 27795389 27796073 -114475371 - L1PA16 LINE L1 -9 6157 5440 3883 184 47 9 chr9 27796101 27797035 -114474409 + L1P LINE L1 4452 5420 -743 289 364 91 0 chr9 27797999 27798186 -114473258 - MIR SINE MIR 0 262 59 180 295 16 16 chr9 27798356 27798417 -114473027 - MIR SINE MIR -2 260 200 362 306 33 33 chr9 27798601 27798784 -114472660 + MLT1J2 LTR MaLR 266 448 -2 306 311 230 0 chr9 27798784 27798945 -114472499 - MIR SINE MIR -59 203 6 868 255 53 24 chr9 27799793 27800040 -114471404 - MIR SINE MIR -8 254 1 1584 192 15 29 chr9 27800383 27800740 -114470704 - MLT1A2 LTR MaLR 0 467 23 2209 108 3 0 chr9 27800957 27801253 -114470191 + AluSx SINE Alu 1 297 -15 329 317 80 43 chr9 27801353 27801564 -114469880 + MIR SINE MIR 45 262 0 242 240 20 0 chr9 27801599 27801649 -114469795 - L2 LINE L2 -5 3308 3258 789 322 111 23 chr9 27801906 27802304 -114469140 + L2 LINE L2 2266 2698 -616 200 163 23 0 chr9 27802483 27802526 -114468918 + (TA)n Simple_repeat Simple_repeat 1 44 0 549 110 0 0 chr9 27802564 27802646 -114468798 + (GGAA)n Simple_repeat Simple_repeat 4 85 0 410 271 196 0 chr9 27804296 27804429 -114467015 + MIR SINE MIR 103 261 -1 299 317 93 33 chr9 27805235 27805418 -114466026 + L2 LINE L2 2651 2844 -470 302 247 79 0 chr9 27805442 27805531 -114465913 + MIR SINE MIR 166 261 -1 1214 55 0 7 chr9 27805679 27805706 -114465738 + L1P LINE L1 4194 4220 -1926 7336 42 0 7 chr9 27805706 27807351 -114464093 - L1PA5 LINE L1 -1 6153 4515 1214 55 0 7 chr9 27807351 27807498 -114463946 + L1P LINE L1 4220 4361 -1785 290 349 37 0 chr9 27807511 27807620 -114463824 + L2 LINE L2 3191 3303 -10 206 326 0 0 chr9 27807718 27807764 -114463680 - MIR SINE MIR -129 79 34 321 26 0 0 chr9 27807770 27807808 -114463636 + (TTCA)n Simple_repeat Simple_repeat 1 38 0 230 433 39 0 chr9 27807921 27808048 -114463396 - L2 LINE L2 -215 3057 2926 1409 149 98 0 chr9 27809918 27810193 -114461251 + L1MB4 LINE L1 5869 6170 -10 271 336 19 28 chr9 27810396 27810503 -114460941 - L2 LINE L2 -1 3312 3207 180 290 0 32 chr9 27811318 27811380 -114460064 + L3b LINE CR1 1281 1340 -243 27 62 0 0 chr9 27811399 27811447 -114459997 + AT_rich Low_complexity Low_complexity 1 48 0 1526 253 107 36 chr9 27811821 27812411 -114459033 - LTR48B LTR ERV1 -6 638 7 27 49 0 0 chr9 27812669 27812710 -114458734 + AT_rich Low_complexity Low_complexity 1 41 0 297 358 18 17 chr9 27813930 27814082 -114457362 + MER5A DNA MER1_type 20 183 -6 24 53 0 0 chr9 27814887 27814925 -114456519 + AT_rich Low_complexity Low_complexity 1 38 0 605 348 62 51 chr9 27815061 27815957 -114455487 + L1M4 LINE L1 2128 3033 -3113 640 298 59 26 chr9 27815977 27816249 -114455195 + L1MB1 LINE L1 173 453 -5860 10891 230 58 32 chr9 27816712 27818016 -114453428 + L1MB1 LINE L1 801 2069 -4335 2398 63 0 7 chr9 27818016 27818319 -114453125 - AluY SINE Alu -10 301 1 10891 230 58 32 chr9 27818319 27819024 -114452420 + L1MB1 LINE L1 2069 2754 -3650 1178 150 55 9 chr9 27819024 27819244 -114452200 - MER30 DNA MER1_type 0 230 1 10891 230 58 32 chr9 27819244 27821949 -114449495 + L1MB1 LINE L1 2754 5570 -834 2021 161 0 0 chr9 27821949 27822260 -114449184 + AluSx SINE Alu 1 311 -1 10891 230 58 32 chr9 27822260 27823115 -114448329 + L1MB1 LINE L1 5570 6401 -3 336 361 110 5 chr9 27824463 27824682 -114446762 - MIR SINE MIR -2 260 19 20000 39 7 3 chr9 27824998 27828796 -114442648 - L1PA5 LINE L1 0 6154 2346 231 392 20 0 chr9 27831370 27831472 -114439972 - MIR SINE MIR -112 150 47 437 358 59 22 chr9 27831495 27831816 -114439628 + L1MEc LINE L1 109 441 -5955 427 268 115 27 chr9 27831978 27832422 -114439022 + L1MEc LINE L1 657 1139 -5066 1309 114 0 21 chr9 27832495 27832688 -114438756 + MER1B DNA MER1_type 87 275 -64 1124 293 46 27 chr9 27832711 27833339 -114438105 + L1MEc LINE L1 1214 1853 -4543 230 333 39 16 chr9 27834296 27834425 -114437019 + L1ME2 LINE L1 5574 5705 -2103 378 341 32 0 chr9 27834433 27834559 -114436885 + L3 LINE CR1 1437 1566 -11 202 273 30 0 chr9 27834588 27834654 -114436790 + (CAG)n Simple_repeat Simple_repeat 2 69 0 807 263 93 37 chr9 27835025 27835379 -114436065 - MLT1A2 LTR MaLR 0 374 1 2817 121 17 0 chr9 27835508 27835914 -114435530 + MLT2A2 LTR ERVL 1 413 -40 261 0 0 0 chr9 27835926 27835955 -114435489 + (CA)n Simple_repeat Simple_repeat 2 30 0 489 184 0 20 chr9 27835980 27836127 -114435317 + (TA)n Simple_repeat Simple_repeat 1 144 0 303 275 11 11 chr9 27836129 27836220 -114435224 + L1MC4 LINE L1 6612 6702 -1340 373 71 24 106 chr9 27836223 27836267 -114435177 + MLT2A2 LTR ERVL 376 411 -42 390 55 0 41 chr9 27836267 27836340 -114435104 + (TA)n Simple_repeat Simple_repeat 2 71 0 373 71 24 106 chr9 27836340 27836380 -114435064 + MLT2A2 LTR ERVL 411 453 0 373 294 75 10 chr9 27837266 27837467 -114433977 + L1MC4a LINE L1 5617 5830 -1978 314 297 44 88 chr9 27837516 27837765 -114433679 + L1ME2 LINE L1 5854 6091 -73 432 276 112 0 chr9 27837769 27837885 -114433559 - FLAM_A SINE Alu -3 130 2 233 94 0 0 chr9 27837888 27837920 -114433524 + HsTC2 DNA Tc2 32 63 -1835 381 168 168 0 chr9 27837977 27838084 -114433360 + HsTC2 DNA Tc2 1656 1780 -118 983 276 74 35 chr9 27838094 27838674 -114432770 + L1MEc LINE L1 1859 2461 -3935 1910 274 98 19 chr9 27838775 27839758 -114431686 + L1MEc LINE L1 3550 4609 -1606 19893 168 25 22 chr9 27839760 27840032 -114431412 - L1MA1 LINE L1 0 7721 7451 2021 75 0 11 chr9 27840032 27840298 -114431146 - AluY SINE Alu 0 311 49 2053 88 0 0 chr9 27840299 27840561 -114430883 - AluY SINE Alu -49 262 1 19893 168 25 22 chr9 27840561 27841931 -114429513 - L1MA1 LINE L1 -270 7451 6086 246 95 0 0 chr9 27841931 27841973 -114429471 + (TTGG)n Simple_repeat Simple_repeat 2 43 0 19893 168 25 22 chr9 27841973 27846259 -114425185 - L1MA1 LINE L1 -1635 6086 1743 207 0 0 0 chr9 27846259 27846282 -114425162 + (TC)n Simple_repeat Simple_repeat 2 24 0 19893 168 25 22 chr9 27846282 27848015 -114423429 - L1MA1 LINE L1 -5978 1743 16 460 330 53 47 chr9 27848071 27848392 -114423052 - L1ME LINE L1 -346 5775 5453 511 246 99 0 chr9 27849194 27849336 -114422108 + MER69A DNA AcHobo 16 171 -6 308 330 28 0 chr9 27849614 27849723 -114421721 - MIR3 SINE MIR -10 198 87 336 313 144 6 chr9 27850397 27850557 -114420887 + MIR SINE MIR 10 191 -71 507 335 69 0 chr9 27851641 27851829 -114419615 + MIR SINE MIR 29 229 -33 6858 194 30 15 chr9 27853065 27853194 -114418250 + L1M2 LINE L1 2512 2638 -4210 1534 153 80 52 chr9 27853194 27853559 -114417885 - THE1C LTR MaLR 0 375 1 6858 194 30 15 chr9 27853559 27855381 -114416063 + L1M2 LINE L1 2638 4494 -2354 3579 152 63 0 chr9 27855381 27855955 -114415489 - LTR9 LTR ERV1 0 612 3 6154 182 58 18 chr9 27855958 27857207 -114414237 - HUERS-P3b LTR ERV1 -7 7411 6112 3863 83 7 11 chr9 27857213 27857752 -114413692 - HUERS-P3b LTR ERV1 -3809 3609 3073 1922 220 74 2 chr9 27857752 27858170 -114413274 + LTR8 LTR ERV1 1 448 -243 13909 167 31 30 chr9 27858170 27859602 -114411842 - HUERS-P3b LTR ERV1 -4783 2635 1197 333 0 0 0 chr9 27859602 27859639 -114411805 + (CA)n Simple_repeat Simple_repeat 1 37 0 13909 167 31 30 chr9 27859639 27860822 -114410622 - HUERS-P3b LTR ERV1 -6221 1197 17 3592 162 46 2 chr9 27860839 27861425 -114410019 - LTR9 LTR ERV1 0 612 1 2924 198 13 5 chr9 27861425 27862058 -114409386 + L1M2 LINE L1 4491 5128 -1720 2384 40 40 17 chr9 27862063 27862361 -114409083 - AluY SINE Alu -6 305 1 348 83 0 0 chr9 27862572 27862620 -114408824 + (TG)n Simple_repeat Simple_repeat 1 48 0 233 336 51 7 chr9 27863047 27863184 -114408260 - MIR SINE MIR 0 262 120 216 354 0 0 chr9 27863452 27863517 -114407927 - MIR SINE MIR -3 259 195 264 217 28 104 chr9 27863524 27863630 -114407814 - MLT1H LTR MaLR 0 549 452 275 320 10 10 chr9 27863763 27863860 -114407584 - MLT1H LTR MaLR -307 242 146 1200 169 165 4 chr9 27864117 27864359 -114407085 - AluJo SINE Alu -15 297 17 23 97 0 0 chr9 27864677 27864749 -114406695 + AT_rich Low_complexity Low_complexity 1 72 0 201 363 0 0 chr9 27866039 27866130 -114405314 + (TA)n Simple_repeat Simple_repeat 1 91 0 1499 179 39 4 chr9 27866130 27866409 -114405035 + MLT1A1 LTR MaLR 77 365 0 21 57 0 0 chr9 27866413 27866448 -114404996 + AT_rich Low_complexity Low_complexity 1 35 0 1010 215 96 0 chr9 27866678 27866971 -114404473 - MER33 DNA MER1_type -3 321 1 1648 241 145 73 chr9 27867462 27868411 -114403033 + LTR28 LTR ERV1 3 1020 0 1503 194 10 26 chr9 27868506 27868815 -114402629 - MER67D LTR ERV1 -210 304 1 277 254 218 9 chr9 27869150 27869260 -114402184 + MER5A DNA MER1_type 54 186 -3 2404 204 32 2 chr9 27870245 27870744 -114400700 + MER67D LTR ERV1 1 514 0 483 18 0 0 chr9 27870762 27870818 -114400626 + (TG)n Simple_repeat Simple_repeat 2 57 0 368 259 48 54 chr9 27871561 27871727 -114399717 + MIR SINE MIR 91 255 -7 246 179 0 0 chr9 27871745 27871801 -114399643 + CT-rich Low_complexity Low_complexity 3 58 0 273 250 25 0 chr9 27872655 27872735 -114398709 - MER53 DNA DNA -1 188 107 265 247 26 0 chr9 27872666 27872743 -114398701 + MER53 DNA DNA 23 101 -88 * 2835 13 0 0 chr9 27873440 27873753 -114397691 - AluYb8 SINE Alu -5 313 1 291 301 77 52 chr9 27874006 27874835 -114396609 - L1MEd LINE L1 -4699 1611 717 2064 153 0 0 chr9 27875343 27875644 -114395800 - AluSx SINE Alu -9 303 3 2126 130 0 7 chr9 27876546 27876845 -114394599 - AluSc SINE Alu -12 297 1 36336 95 6 16 chr9 27878234 27884438 -114387006 + L1PA6 LINE L1 11 6153 -1 2180 131 73 14 chr9 27885021 27885365 -114386079 - THE1B LTR MaLR 0 364 1 11135 110 10 1 chr9 27885366 27886931 -114384513 - THE1B-int LTR MaLR -1 1579 1 1922 143 88 26 chr9 27886931 27887274 -114384170 - THE1B LTR MaLR 0 364 1 1174 175 0 0 chr9 27887927 27888127 -114383317 + L1PBa LINE L1 3 202 -6661 * 9669 129 75 14 chr9 27888124 27890326 -114381118 + L1PBa LINE L1 639 3129 -3733 624 254 31 16 chr9 27890573 27890766 -114380678 + LTR7 LTR ERV1 238 433 -17 6129 260 27 29 chr9 27891250 27895277 -114376167 + HERVH LTR ERV1 596 7713 0 476 267 84 100 chr9 27895285 27895735 -114375709 + LTR7 LTR ERV1 8 450 0 4515 165 8 19 chr9 27895754 27897196 -114374248 + L1PB1 LINE L1 4333 5759 -392 198 0 0 0 chr9 27897196 27897218 -114374226 + (TCTA)n Simple_repeat Simple_repeat 1 22 0 4515 165 8 19 chr9 27897218 27897332 -114374112 + L1PB1 LINE L1 5759 5873 -278 2826 98 11 3 chr9 27897337 27898232 -114373212 - L1PA8 LINE L1 -2 6170 5126 1957 87 35 7 chr9 27898232 27898515 -114372929 + L1PB1 LINE L1 5857 6151 0 1283 208 65 6 chr9 27899259 27899581 -114371863 - MER58B DNA MER1_type 0 341 1 2385 120 14 19 chr9 27900852 27901218 -114370226 + THE1B LTR MaLR 1 364 0 21 36 0 0 chr9 27901845 27901873 -114369571 + AT_rich Low_complexity Low_complexity 1 28 0 212 293 71 57 chr9 27902673 27902813 -114368631 + L2 LINE L2 2936 3077 -195 2637 136 44 2 chr9 27903337 27903748 -114367696 + MSTC LTR MaLR 1 428 0 202 280 20 0 chr9 27904647 27904697 -114366747 + L2 LINE L2 3217 3267 -5 28 61 0 0 chr9 27905245 27905294 -114366150 + AT_rich Low_complexity Low_complexity 1 49 0 245 215 15 0 chr9 27905514 27905579 -114365865 + (TA)n Simple_repeat Simple_repeat 2 67 0 243 0 0 0 chr9 27905833 27905860 -114365584 + (TTCA)n Simple_repeat Simple_repeat 4 30 0 235 226 16 16 chr9 27905866 27905928 -114365516 + (TCCA)n Simple_repeat Simple_repeat 4 65 0 23 68 0 0 chr9 27905986 27906030 -114365414 + AT_rich Low_complexity Low_complexity 1 44 0 3789 199 57 13 chr9 27906042 27907058 -114364386 - L1MB5 LINE L1 -9 6165 5103 810 217 17 0 chr9 27907051 27907231 -114364213 - L1MB5 LINE L1 -1543 4603 4421 * 23 33 0 0 chr9 27907735 27907765 -114363679 + AT_rich Low_complexity Low_complexity 1 30 0 685 309 175 14 chr9 27908396 27908966 -114362478 + L2 LINE L2 2641 3313 0 255 269 15 0 chr9 27910728 27910795 -114360649 + MIR3 SINE MIR 97 164 -44 2161 125 76 15 chr9 27912286 27912629 -114358815 - THE1B LTR MaLR 0 364 1 10977 109 19 2 chr9 27912639 27914182 -114357262 - THE1B-int LTR MaLR -11 1569 1 2122 113 69 17 chr9 27914182 27914528 -114356916 - THE1B LTR MaLR 0 364 1 182 356 76 30 chr9 27915234 27915366 -114356078 - MIR SINE MIR -76 186 49 372 94 0 0 chr9 27915618 27915671 -114355773 + (CA)n Simple_repeat Simple_repeat 2 54 0 22 0 0 0 chr9 27917047 27917069 -114354375 + AT_rich Low_complexity Low_complexity 1 22 0 193 333 0 0 chr9 27917737 27917800 -114353644 - L2 LINE L2 -4 3268 3206 263 200 0 0 chr9 27918009 27918059 -114353385 - L1MC4a LINE L1 -6 7802 7753 474 138 23 92 chr9 27918059 27918189 -114353255 + L1MB8 LINE L1 5921 6041 -137 * 6698 61 9 0 chr9 27918178 27919048 -114352396 - L1PA7 LINE L1 0 6154 5277 231 61 0 0 chr9 27919133 27919166 -114352278 + (TG)n Simple_repeat Simple_repeat 1 33 0 21 0 0 0 chr9 27919914 27919935 -114351509 + AT_rich Low_complexity Low_complexity 1 21 0 726 186 0 0 chr9 27920631 27920792 -114350652 + FLAM_C SINE Alu 6 166 0 265 264 142 0 chr9 27922045 27922151 -114349293 - MER67D LTR ERV1 -5 509 389 1502 185 16 83 chr9 27922163 27922564 -114348880 - MER67C LTR ERV1 -242 272 1 333 0 0 0 chr9 27923093 27923130 -114348314 + (TG)n Simple_repeat Simple_repeat 2 38 0 21 95 0 0 chr9 27923357 27923420 -114348024 + AT_rich Low_complexity Low_complexity 1 63 0 23 54 0 0 chr9 27926450 27926487 -114344957 + AT_rich Low_complexity Low_complexity 1 37 0 1623 196 2 86 chr9 27927209 27927410 -114344034 - MLT1A2 LTR MaLR 0 374 158 384 22 0 0 chr9 27927410 27927455 -114343989 + (TG)n Simple_repeat Simple_repeat 1 45 0 2914 159 36 26 chr9 27927462 27928047 -114343397 - LTR49 LTR ERV1 -2 593 3 1623 196 2 86 chr9 27928047 27928245 -114343199 - MLT1A2 LTR MaLR -222 152 1 336 48 0 0 chr9 27930755 27930797 -114340647 + (CA)n Simple_repeat Simple_repeat 1 42 0 227 279 122 0 chr9 27930802 27930944 -114340500 + MIR SINE MIR 94 262 0 1157 174 94 0 chr9 27931344 27931579 -114339865 + L1MB1 LINE L1 5908 6164 -4 2533 174 2 17 chr9 27931889 27932309 -114339135 - MSTC LTR MaLR -12 416 3 299 293 27 34 chr9 27932328 27932475 -114338969 + MLT1J1 LTR MaLR 62 207 -239 24 0 0 0 chr9 27932767 27932791 -114338653 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr9 27933111 27933135 -114338309 + AT_rich Low_complexity Low_complexity 1 24 0 291 28 0 0 chr9 27933342 27933378 -114338066 + (CA)n Simple_repeat Simple_repeat 1 36 0 695 331 47 16 chr9 27933553 27933934 -114337510 + L1ME1 LINE L1 5407 5799 -2009 21 0 0 0 chr9 27934113 27934134 -114337310 + AT_rich Low_complexity Low_complexity 1 21 0 2937 209 37 6 chr9 27934168 27934870 -114336574 + L1MB7 LINE L1 5296 6019 -165 324 272 97 68 chr9 27935134 27935340 -114336104 + L1MC4a LINE L1 6382 6593 -1215 654 306 35 11 chr9 27935400 27935776 -114335668 + L1MEc LINE L1 1419 1803 -4593 328 321 44 15 chr9 27935871 27936008 -114335436 + L1MC5 LINE L1 6647 6787 -1174 2321 254 97 14 chr9 27936061 27937387 -114334057 + L1MEc LINE L1 1838 3236 -2979 466 271 36 14 chr9 27937388 27937614 -114333830 + L1ME1 LINE L1 5943 6184 0 431 271 34 38 chr9 27937680 27937916 -114333528 + L1MC5 LINE L1 7679 7913 -48 23 0 0 0 chr9 27938119 27938142 -114333302 + AT_rich Low_complexity Low_complexity 1 23 0 478 333 52 0 chr9 27938189 27938342 -114333102 + MIR SINE MIR 36 196 -66 24 0 0 0 chr9 27938509 27938533 -114332911 + AT_rich Low_complexity Low_complexity 1 24 0 26376 43 2 2 chr9 27940456 27944571 -114326873 + L1PA4 LINE L1 2040 6155 0 1049 219 157 14 chr9 27944708 27945059 -114326385 - LTR37A LTR ERV1 -12 414 14 1587 244 57 18 chr9 27945291 27945730 -114325714 - MLT1C LTR MaLR -6 461 6 539 343 6 0 chr9 27945977 27946143 -114325301 + MIR3 SINE MIR 33 199 -9 320 253 11 33 chr9 27948149 27948240 -114323204 - MIR SINE MIR -15 247 159 297 279 257 0 chr9 27949167 27949307 -114322137 + MIR SINE MIR 23 198 -64 238 248 86 38 chr9 27949359 27949464 -114321980 - MIR SINE MIR -6 256 147 * 257 292 56 11 chr9 27949418 27949507 -114321937 + MIR SINE MIR 156 248 -14 204 40 0 0 chr9 27954101 27954126 -114317318 + (TTTTG)n Simple_repeat Simple_repeat 5 29 0 249 254 60 67 chr9 27955060 27955194 -114316250 - MIR SINE MIR 0 262 130 5620 124 5 28 chr9 27955329 27956222 -114315222 - MER4D LTR ERV1 0 872 1 200 329 35 0 chr9 27958575 27958660 -114312784 - MIR SINE MIR 0 262 175 188 325 48 24 chr9 27958750 27958833 -114312611 - MIR SINE MIR -131 131 47 191 307 57 23 chr9 27959741 27959829 -114311615 + MIR3 SINE MIR 76 166 -42 255 313 154 42 chr9 27960026 27960194 -114311250 + MLT1J LTR MaLR 224 422 -89 2073 230 87 69 chr9 27960194 27960921 -114310523 + LTR68 LTR ERV1 1 740 0 255 313 154 42 chr9 27960921 27960966 -114310478 + MLT1J LTR MaLR 422 461 -50 22 0 0 0 chr9 27961618 27961640 -114309804 + AT_rich Low_complexity Low_complexity 1 22 0 273 383 17 8 chr9 27962521 27962641 -114308803 + MIR3 SINE MIR 88 208 0 242 317 58 50 chr9 27962788 27962908 -114308536 + MIR SINE MIR 71 191 -71 22 80 0 0 chr9 27962994 27963044 -114308400 + AT_rich Low_complexity Low_complexity 1 50 0 220 310 0 62 chr9 27963291 27963404 -114308040 + L2 LINE L2 1583 1688 -1626 270 329 66 48 chr9 27963435 27963602 -114307842 - MLT1K LTR MaLR -290 298 129 603 40 0 0 chr9 27964463 27964537 -114306907 + (TTTTA)n Simple_repeat Simple_repeat 2 75 0 212 331 141 21 chr9 27964594 27964736 -114306708 + MIR SINE MIR 34 192 -70 222 328 90 49 chr9 27965037 27965159 -114306285 - MIR SINE MIR -58 150 24 2098 196 34 12 chr9 27965218 27965631 -114305813 - MSTB LTR MaLR -4 422 1 1402 253 50 23 chr9 27966983 27967426 -114304018 - MLT1C LTR MaLR 0 467 13 24742 144 16 16 chr9 27967852 27970725 -114300719 - L1PA8A LINE L1 0 6446 3575 363 23 0 0 chr9 27970725 27970769 -114300675 + (TCTA)n Simple_repeat Simple_repeat 4 47 0 24742 144 16 16 chr9 27970769 27974275 -114297169 - L1PA8A LINE L1 -2871 3575 3 683 286 15 10 chr9 27974917 27975120 -114296324 + MIR SINE MIR 59 262 0 235 218 0 36 chr9 27975288 27975343 -114296101 + L3b LINE CR1 1527 1579 -4 194 376 83 32 chr9 27975736 27975893 -114295551 + L2 LINE L2 3108 3272 0 22 35 0 0 chr9 27976032 27976061 -114295383 + AT_rich Low_complexity Low_complexity 1 29 0 364 313 61 23 chr9 27976252 27976383 -114295061 - L2 LINE L2 -3 3269 3134 1386 196 0 0 chr9 27976472 27976696 -114294748 + AluJb SINE Alu 16 239 -73 264 297 244 17 chr9 27977106 27977466 -114293978 - L2 LINE L2 -619 2695 2254 243 0 0 0 chr9 27977482 27977509 -114293935 + (CA)n Simple_repeat Simple_repeat 2 28 0 254 155 0 56 chr9 27977580 27977651 -114293793 + (TG)n Simple_repeat Simple_repeat 2 68 0 239 218 26 39 chr9 27977681 27977759 -114293685 + L1MCa LINE L1 1992 2068 -4358 568 220 7 7 chr9 27977760 27977910 -114293534 + (TA)n Simple_repeat Simple_repeat 2 151 0 259 281 11 0 chr9 27977910 27977999 -114293445 + L1MC4 LINE L1 6614 6703 -1339 226 322 26 53 chr9 27978137 27978255 -114293189 - L2 LINE L2 -1230 2084 1969 2190 118 0 0 chr9 27978255 27978552 -114292892 - AluSc SINE Alu -12 297 1 226 322 26 53 chr9 27978552 27978585 -114292859 - L2 LINE L2 -1345 1969 1937 2918 173 93 2 chr9 27978585 27979124 -114292320 - LTR69 LTR ERVL 0 588 1 205 280 0 0 chr9 27979624 27979674 -114291770 - MIR SINE MIR -15 247 198 499 342 21 60 chr9 27979679 27980012 -114291432 - L2 LINE L2 -1837 1477 1158 374 360 37 37 chr9 27980180 27980608 -114290836 + L1ME LINE L1 166 593 -5612 666 317 62 17 chr9 27980794 27981390 -114290054 + L1ME LINE L1 1007 1629 -4767 23 54 0 0 chr9 27981454 27981491 -114289953 + AT_rich Low_complexity Low_complexity 1 37 0 980 236 50 8 chr9 27981491 27981749 -114289695 + L1ME3 LINE L1 5890 6158 -4 260 302 89 68 chr9 27981871 27982106 -114289338 + L3 LINE CR1 1085 1324 -253 266 275 43 0 chr9 27982142 27982211 -114289233 + L3 LINE CR1 1430 1501 -76 1493 176 60 33 chr9 27982268 27982570 -114288874 + AluJb SINE Alu 1 310 -2 308 312 0 0 chr9 27985359 27985436 -114286008 + L2 LINE L2 2943 3019 -253 362 299 54 12 chr9 27985570 27985737 -114285707 + MIR SINE MIR 84 257 -5 21 71 0 0 chr9 27985749 27985791 -114285653 + AT_rich Low_complexity Low_complexity 1 42 0 1921 180 83 11 chr9 27987108 27987542 -114283902 + MLT1C LTR MaLR 3 467 0 405 296 76 38 chr9 27987801 27988169 -114283275 - HAL1b LINE L1 -708 640 259 206 241 0 19 chr9 27988174 27988228 -114283216 + (TATATG)n Simple_repeat Simple_repeat 6 58 0 383 282 6 31 chr9 27988442 27988605 -114282839 - L1M4 LINE L1 -1421 4725 4567 1385 143 41 121 chr9 27988611 27988974 -114282470 + THE1C LTR MaLR 1 334 -41 2202 264 62 18 chr9 27988978 27989915 -114281529 - L1M4 LINE L1 -1622 4524 3547 364 285 71 19 chr9 27989955 27990278 -114281166 - L1MEc LINE L1 -5142 1254 915 1455 199 31 3 chr9 27990279 27990565 -114280879 + AluJb SINE Alu 1 294 -18 28 0 0 0 chr9 27990565 27990593 -114280851 + AT_rich Low_complexity Low_complexity 1 28 0 549 345 26 40 chr9 27991183 27991534 -114279910 - L1MEc LINE L1 -6021 375 30 219 341 11 0 chr9 27992756 27992844 -114278600 + L2 LINE L2 2763 2851 -463 279 326 61 10 chr9 27994136 27994234 -114277210 + L2 LINE L2 3170 3272 0 202 375 11 0 chr9 27994303 27994391 -114277053 - MIR SINE MIR -82 180 92 673 290 88 30 chr9 27994522 27995035 -114276409 - LTR50 LTR ERVL 0 795 32 308 312 0 0 chr9 27995772 27995849 -114275595 + L2 LINE L2 2943 3019 -253 355 299 54 12 chr9 27995983 27996150 -114275294 + MIR SINE MIR 84 257 -5 21 71 0 0 chr9 27996162 27996204 -114275240 + AT_rich Low_complexity Low_complexity 1 42 0 1518 203 87 19 chr9 27997518 27997942 -114273502 + MLT1C LTR MaLR 3 455 -12 189 0 0 0 chr9 27998675 27998696 -114272748 + (T)n Simple_repeat Simple_repeat 1 21 0 28 0 0 0 chr9 28000215 28000243 -114271201 + AT_rich Low_complexity Low_complexity 1 28 0 220 146 24 0 chr9 28000681 28000722 -114270722 + (TA)n Simple_repeat Simple_repeat 2 43 0 226 304 0 0 chr9 28001371 28001427 -114270017 - L2 LINE L2 -5 3267 3212 248 167 0 56 chr9 28001642 28001696 -114269748 - MLT1F LTR MaLR -415 127 77 315 53 0 0 chr9 28001737 28001775 -114269669 + MLT2A2 LTR ERVL 416 453 0 2168 118 23 0 chr9 28001791 28002097 -114269347 - MLT2A2 LTR ERVL -140 313 1 5203 79 39 0 chr9 28002097 28002809 -114268635 - HERVL-A2 LTR ERVL 0 5654 4915 709 74 11 0 chr9 28002909 28003004 -114268440 + HERVL-A2 LTR ERVL 143 238 -5416 288 0 0 0 chr9 28003006 28003038 -114268406 + (GA)n Simple_repeat Simple_repeat 2 33 0 2841 103 16 0 chr9 28003038 28003418 -114268026 - MLT2A2 LTR ERVL -60 393 8 518 336 137 24 chr9 28004006 28004686 -114266758 + L2 LINE L2 2542 3312 -1 565 184 16 0 chr9 28004754 28004879 -114266565 - L1MA7 LINE L1 0 6291 6165 659 311 104 17 chr9 28005402 28005701 -114265743 - LTR50 LTR ERVL 0 795 471 445 235 62 49 chr9 28005774 28005936 -114265508 - LTR50 LTR ERVL -629 166 3 266 348 51 0 chr9 28006068 28006206 -114265238 - L2 LINE L2 -4 3309 3165 222 215 91 29 chr9 28006907 28006990 -114264454 - MIR SINE MIR -15 193 97 280 293 35 100 chr9 28008513 28008539 -114262905 + L2 LINE L2 3023 3049 -264 2458 57 3 0 chr9 28008539 28008840 -114262604 + AluY SINE Alu 1 302 -9 280 293 35 100 chr9 28008840 28009042 -114262402 + L2 LINE L2 3049 3236 -77 1862 298 151 26 chr9 28009044 28010028 -114261416 - L2 LINE L2 -7 3306 2200 699 262 18 29 chr9 28010363 28010638 -114260806 + AluSc SINE Alu 6 277 -32 416 363 6 18 chr9 28010725 28010893 -114260551 - MLT1H1 LTR MaLR -357 198 33 240 170 0 0 chr9 28011150 28011203 -114260241 + GA-rich Low_complexity Low_complexity 1 53 0 647 305 120 7 chr9 28011819 28012111 -114259333 + MLT1I LTR MaLR 63 387 -22 343 253 32 97 chr9 28012323 28012457 -114258987 + MIR SINE MIR 70 194 -68 800 222 37 23 chr9 28012457 28012673 -114258771 + MER20 DNA MER1_type 1 219 0 343 253 32 97 chr9 28012673 28012692 -114258752 + MIR SINE MIR 194 213 -49 22 0 0 0 chr9 28013059 28013081 -114258363 + AT_rich Low_complexity Low_complexity 1 22 0 2023 146 0 13 chr9 28013519 28013835 -114257609 + AluSx SINE Alu 1 312 0 259 301 80 32 chr9 28015576 28015858 -114255586 + L1ME LINE L1 5509 5818 -303 270 256 11 111 chr9 28016254 28016344 -114255100 + L2 LINE L2 3136 3216 -56 219 281 115 10 chr9 28016909 28017005 -114254439 - MIR3 SINE MIR -1 207 102 2009 66 0 4 chr9 28017355 28017611 -114253833 + AluY SINE Alu 4 258 -53 207 0 0 0 chr9 28017612 28017635 -114253809 + (A)n Simple_repeat Simple_repeat 1 23 0 25444 90 10 6 chr9 28018107 28021535 -114249909 - HERVL LTR ERVL -2034 3620 181 2438 81 0 3 chr9 28022314 28022621 -114248823 + AluY SINE Alu 2 307 -4 280 274 0 24 chr9 28022985 28023069 -114248375 - MIR3 SINE MIR -42 166 85 1965 184 124 50 chr9 28023383 28024018 -114247426 + LTR1B LTR ERV1 1 720 -106 691 276 21 16 chr9 28024134 28024326 -114247118 + MLT1I LTR MaLR 210 402 -7 26 0 0 0 chr9 28025210 28025236 -114246208 + AT_rich Low_complexity Low_complexity 1 26 0 185 154 26 0 chr9 28027248 28027287 -114244157 + (TA)n Simple_repeat Simple_repeat 1 40 0 569 301 74 6 chr9 28027652 28027815 -114243629 + MER5B DNA MER1_type 1 174 -4 761 195 0 0 chr9 28027996 28028124 -114243320 + MER7A DNA MER2_type 1 126 -220 853 203 46 13 chr9 28028135 28028372 -114243072 + MER33 DNA MER1_type 52 296 -28 327 320 98 34 chr9 28028734 28028968 -114242476 + MIR SINE MIR 2 250 -12 314 313 118 28 chr9 28029102 28029246 -114242198 + L2 LINE L2 3116 3272 0 193 316 83 23 chr9 28029878 28030011 -114241433 + L2 LINE L2 3172 3312 -1 342 266 13 0 chr9 28030482 28030561 -114240883 + Tigger3(Golem) DNA MER2_type 1 80 -2949 247 307 42 60 chr9 28030729 28030895 -114240549 + L2 LINE L2 2892 3054 -259 1016 202 23 18 chr9 28030982 28031200 -114240244 + MER20 DNA MER1_type 1 219 0 318 337 92 18 chr9 28031724 28031887 -114239557 - MIR3 SINE MIR 0 208 34 284 275 113 0 chr9 28032508 28032588 -114238856 + L2 LINE L2 3207 3295 -18 2014 118 3 7 chr9 28032604 28032925 -114238519 - AluSq SINE Alu 0 320 1 2080 157 18 0 chr9 28034197 28034534 -114236910 - MER61A LTR ERV1 0 343 1 1876 171 3 3 chr9 28035881 28036190 -114235254 + AluJo SINE Alu 2 310 -2 26 50 0 0 chr9 28036197 28036237 -114235207 + AT_rich Low_complexity Low_complexity 1 40 0 641 228 21 7 chr9 28038837 28038982 -114232462 + MER117 DNA MER1_type 4 150 -47 261 200 40 27 chr9 28039006 28039081 -114232363 + L2 LINE L2 2685 2760 -554 185 356 26 43 chr9 28039262 28039377 -114232067 + L2 LINE L2 2987 3099 -173 318 171 14 57 chr9 28040056 28040126 -114231318 + MER5A DNA MER1_type 10 76 -113 570 101 0 13 chr9 28040126 28040205 -114231239 + MER4E LTR ERV1 652 729 -37 187 274 236 19 chr9 28040241 28040347 -114231097 + MER5A DNA MER1_type 61 189 0 622 217 22 7 chr9 28040360 28040498 -114230946 - MER5B DNA MER1_type -30 148 9 219 285 223 31 chr9 28040511 28040641 -114230803 + MER5A DNA MER1_type 35 189 0 385 242 68 38 chr9 28040765 28040897 -114230547 + MLT1E3 LTR MaLR 69 204 -420 907 300 134 20 chr9 28040900 28041593 -114229851 + HAL1 LINE L1 1141 1912 -595 727 157 11 22 chr9 28041637 28041815 -114229629 + GA-rich Low_complexity Low_complexity 2 177 0 207 281 101 34 chr9 28043027 28043116 -114228328 - MIR3 SINE MIR -16 192 98 273 404 43 7 chr9 28044732 28044873 -114226571 + L2 LINE L2 3127 3272 0 2453 131 17 0 chr9 28045634 28045992 -114225452 + THE1B LTR MaLR 1 364 0 2452 167 24 5 chr9 28046153 28046573 -114224871 + MSTA LTR MaLR 1 428 0 275 355 43 16 chr9 28046749 28046935 -114224509 - MIR SINE MIR -52 210 20 26 30 0 0 chr9 28047380 28047413 -114224031 + AT_rich Low_complexity Low_complexity 1 33 0 182 208 83 21 chr9 28048489 28048537 -114222907 - L2 LINE L2 0 3272 3222 184 250 62 62 chr9 28048929 28048993 -114222451 + L3 LINE CR1 345 408 -1169 343 316 35 46 chr9 28049309 28049483 -114221961 - L2 LINE L2 -435 2879 2708 1256 129 0 0 chr9 28049484 28049654 -114221790 - AluSg/x SINE Alu -12 300 131 276 270 93 110 chr9 28049660 28049897 -114221547 - L2 LINE L2 -602 2712 2480 1563 203 7 7 chr9 28050071 28050357 -114221087 - AluJo SINE Alu -21 291 6 194 316 18 0 chr9 28050562 28050619 -114220825 - L2 LINE L2 -3 3269 3212 385 290 62 7 chr9 28051155 28051300 -114220144 - MIR SINE MIR -51 211 59 2467 75 0 3 chr9 28051615 28051923 -114219521 + AluY SINE Alu 1 307 -4 285 319 46 10 chr9 28052286 28052417 -114219027 - MIR3 SINE MIR -42 166 32 2374 179 176 45 chr9 28052684 28053348 -114218096 + LTR1B LTR ERV1 1 751 -75 217 283 17 0 chr9 28054605 28054665 -114216779 + MIR3 SINE MIR 125 185 -23 2293 98 7 0 chr9 28055674 28055980 -114215464 - AluY SINE Alu -3 308 1 1570 255 41 19 chr9 28056007 28056544 -114214900 - L1M4 LINE L1 -2154 3992 3444 375 344 49 101 chr9 28056795 28057223 -114214221 + L2 LINE L2 2866 3271 -1 366 114 0 0 chr9 28059404 28059474 -114211970 + (TA)n Simple_repeat Simple_repeat 1 70 0 441 103 0 0 chr9 28059575 28059643 -114211801 + (TAGA)n Simple_repeat Simple_repeat 3 70 0 444 295 67 52 chr9 28061222 28061415 -114210029 + MIR SINE MIR 11 206 -56 1892 153 7 13 chr9 28061489 28061796 -114209648 - AluJo SINE Alu -5 307 3 417 282 164 9 chr9 28062502 28062722 -114208722 + MIR SINE MIR 9 262 0 180 0 0 0 chr9 28062824 28062844 -114208600 + (CAAAAA)n Simple_repeat Simple_repeat 3 22 0 239 308 33 0 chr9 28063005 28063096 -114208348 - MIR3 SINE MIR -4 204 111 1185 87 0 0 chr9 28063113 28063263 -114208181 - AluSc SINE Alu -159 150 1 1966 138 0 3 chr9 28063266 28063589 -114207855 - AluSx SINE Alu 0 322 1 22 0 0 0 chr9 28064027 28064049 -114207395 + AT_rich Low_complexity Low_complexity 1 22 0 343 253 32 97 chr9 28064416 28064435 -114207009 - MIR SINE MIR -49 213 194 857 241 19 5 chr9 28064435 28064651 -114206793 - MER20 DNA MER1_type 0 219 1 343 253 32 97 chr9 28064651 28064785 -114206659 - MIR SINE MIR -68 194 70 652 312 129 6 chr9 28064997 28065314 -114206130 - MLT1I LTR MaLR -22 387 32 240 170 0 0 chr9 28065905 28065958 -114205486 + CT-rich Low_complexity Low_complexity 1 53 0 420 364 6 17 chr9 28066206 28066382 -114205062 + MLT1G3 LTR MaLR 25 198 -357 2297 92 7 3 chr9 28066441 28066745 -114204699 - AluSc SINE Alu -4 305 1 1433 255 14 31 chr9 28066746 28067162 -114204282 + MLT1C LTR MaLR 34 442 -25 539 289 108 16 chr9 28067220 28067543 -114203901 + MLT1G3 LTR MaLR 156 595 0 298 287 8 33 chr9 28067635 28067757 -114203687 + MLT1G3-int LTR MaLR 258 376 -995 231 243 81 0 chr9 28067849 28067923 -114203521 + MLT1C LTR MaLR 437 516 -39 313 307 11 0 chr9 28067972 28068060 -114203384 + MLT1H1 LTR MaLR 1 89 -466 213 65 0 0 chr9 28069084 28069115 -114202329 + (A)n Simple_repeat Simple_repeat 1 31 0 293 145 16 0 chr9 28069895 28069957 -114201487 + (CA)n Simple_repeat Simple_repeat 2 64 0 2096 136 0 16 chr9 28070543 28070860 -114200584 + AluJb SINE Alu 1 312 0 487 347 86 36 chr9 28070891 28071228 -114200216 + MLT1K LTR MaLR 3 356 -232 295 57 0 0 chr9 28071293 28071328 -114200116 + U2 snRNA snRNA 1 35 -153 295 351 76 0 chr9 28072090 28072221 -114199223 + MIR3 SINE MIR 65 205 -3 23 33 0 0 chr9 28072842 28072872 -114198572 + AT_rich Low_complexity Low_complexity 1 30 0 337 182 80 23 chr9 28073154 28073242 -114198202 - MIR SINE MIR -16 246 154 652 58 0 0 chr9 28073712 28073798 -114197646 - L1PA5 LINE L1 -1 6153 6068 2044 130 7 0 chr9 28074650 28074951 -114196493 + AluY SINE Alu 3 305 -6 457 238 57 33 chr9 28075131 28075253 -114196191 - MLT1I LTR MaLR -5 404 280 260 257 14 14 chr9 28075387 28075461 -114195983 - L2 LINE L2 -1 3312 3239 910 229 132 61 chr9 28075481 28075944 -114195500 - MER67C LTR ERV1 0 514 69 284 180 0 0 chr9 28076009 28076059 -114195385 - MER67D LTR ERV1 -453 61 12 298 178 41 0 chr9 28076078 28076151 -114195293 + L1MA9 LINE L1 6075 6150 -162 7100 238 112 17 chr9 28076165 28078440 -114193004 + L1M3e LINE L1 2 2509 -4528 2637 230 79 54 chr9 28078632 28079841 -114191603 + L1M1 LINE L1 2291 3597 -3968 342 93 19 0 chr9 28079841 28079895 -114191549 - MADE1 DNA Mariner -1 79 25 2637 230 79 54 chr9 28079895 28080286 -114191158 + L1M1 LINE L1 3597 3977 -3588 553 167 10 0 chr9 28080287 28080389 -114191055 + L1M1 LINE L1 4138 4240 -3325 1320 200 12 16 chr9 28080397 28080652 -114190792 - MLT1A1 LTR MaLR -111 254 1 1869 201 11 6 chr9 28080671 28081034 -114190410 + MLT1A1 LTR MaLR 1 365 0 571 276 65 14 chr9 28081059 28081273 -114190171 - L2 LINE L2 -1095 2219 1995 209 204 82 0 chr9 28081290 28081339 -114190105 - L2 LINE L2 -1890 1424 1372 2402 153 3 3 chr9 28081350 28081730 -114189714 + MLT1B LTR MaLR 1 380 -10 924 314 101 36 chr9 28081735 28082258 -114189186 - L2 LINE L2 -1959 1355 799 407 281 31 69 chr9 28082260 28082420 -114189024 - MER5A DNA MER1_type -5 184 31 320 317 175 6 chr9 28082462 28082645 -114188799 - L2 LINE L2 -2504 810 597 34 24 0 0 chr9 28082722 28082763 -114188681 + AT_rich Low_complexity Low_complexity 1 41 0 904 219 33 37 chr9 28082787 28083032 -114188412 + MLT1A1 LTR MaLR 1 271 -119 2015 125 6 56 chr9 28083035 28083372 -114188072 + MER1B DNA MER1_type 20 339 0 192 97 0 0 chr9 28083458 28083489 -114187955 + (CA)n Simple_repeat Simple_repeat 1 31 0 186 339 0 32 chr9 28083489 28083551 -114187893 - L3 LINE CR1 0 1577 1518 2013 165 55 80 chr9 28083575 28084089 -114187355 - L1MC1 LINE L1 -18 6315 5815 478 340 105 0 chr9 28084270 28084461 -114186983 - L3 LINE CR1 -65 1512 1302 311 335 20 66 chr9 28084737 28084934 -114186510 + L3b LINE CR1 1323 1510 -73 356 275 44 12 chr9 28085061 28085221 -114186223 + L1ME LINE L1 5630 5794 -327 33 56 0 0 chr9 28085435 28085489 -114185955 + AT_rich Low_complexity Low_complexity 1 54 0 504 304 119 28 chr9 28086017 28086405 -114185039 + L1ME2 LINE L1 676 1098 -5021 4361 195 31 12 chr9 28086406 28087512 -114183932 + L1MB3 LINE L1 4682 5824 -359 243 0 0 0 chr9 28087512 28087539 -114183905 + (CA)n Simple_repeat Simple_repeat 2 28 0 4361 195 31 12 chr9 28087539 28087906 -114183538 + L1MB3 LINE L1 5824 6183 0 481 284 54 50 chr9 28088961 28089278 -114182166 + L1ME2 LINE L1 2613 2930 -3199 301 316 53 35 chr9 28089343 28089514 -114181930 + L1ME2 LINE L1 4878 5051 -1078 263 288 70 35 chr9 28089718 28089975 -114181469 + L1ME2 LINE L1 5298 5563 -2228 342 270 87 24 chr9 28090008 28090251 -114181193 + L1ME2 LINE L1 5668 5929 -216 29 0 0 0 chr9 28090513 28090542 -114180902 + AT_rich Low_complexity Low_complexity 1 29 0 27 49 0 0 chr9 28090661 28090702 -114180742 + AT_rich Low_complexity Low_complexity 1 41 0 205 333 17 0 chr9 28092790 28092850 -114178594 + L2 LINE L2 3244 3304 -9 322 347 28 21 chr9 28093087 28093231 -114178213 - MER5A DNA MER1_type -44 145 1 2946 69 0 0 chr9 28094656 28095031 -114176413 - L1PA7 LINE L1 -2 6152 5778 1864 169 27 11 chr9 28095389 28095999 -114175445 - MER67C LTR ERV1 0 710 1 419 291 126 13 chr9 28096661 28096812 -114174632 - MIR SINE MIR -74 188 21 208 200 31 0 chr9 28097779 28097844 -114173600 + (TA)n Simple_repeat Simple_repeat 1 67 0 229 356 53 0 chr9 28098680 28098812 -114172632 - MIR SINE MIR -13 249 111 342 219 0 24 chr9 28099017 28099099 -114172345 - LTR67 LTR ERVL -21 536 457 2170 126 0 0 chr9 28100996 28101298 -114170146 - AluSq SINE Alu -11 302 1 1512 146 8 8 chr9 28102128 28102368 -114169076 + AluSg SINE Alu 1 240 -70 180 0 0 0 chr9 28103261 28103281 -114168163 + (T)n Simple_repeat Simple_repeat 1 20 0 24 0 0 0 chr9 28103382 28103406 -114168038 + AT_rich Low_complexity Low_complexity 1 24 0 308 263 0 26 chr9 28103486 28103562 -114167882 - MER5A DNA MER1_type -3 186 113 274 288 0 30 chr9 28103514 28103580 -114167864 + MER5A DNA MER1_type 43 106 -83 * 191 146 24 0 chr9 28103761 28103802 -114167642 + CT-rich Low_complexity Low_complexity 1 42 0 393 289 82 31 chr9 28105088 28105301 -114166143 - MIR SINE MIR -32 230 3 200 360 101 0 chr9 28105727 28105816 -114165628 + MIR SINE MIR 8 105 -157 2240 90 0 35 chr9 28105843 28106153 -114165291 - AluY SINE Alu -10 301 3 680 214 26 7 chr9 28106853 28107007 -114164437 + FRAM SINE Alu 1 157 -19 225 0 0 0 chr9 28107777 28107802 -114163642 + (A)n Simple_repeat Simple_repeat 1 25 0 263 265 48 36 chr9 28107888 28107971 -114163473 + MIR SINE MIR 28 111 -151 222 37 0 0 chr9 28108241 28108268 -114163176 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 2226 115 0 0 chr9 28108315 28108611 -114162833 + AluSx SINE Alu 1 296 -16 338 209 15 0 chr9 28108886 28108953 -114162491 + Tigger3(Golem) DNA MER2_type 2961 3028 -1 267 234 16 0 chr9 28109425 28109489 -114161955 + MIR SINE MIR 133 197 -65 550 296 59 0 chr9 28109678 28109847 -114161597 + MIR SINE MIR 37 215 -47 296 297 136 22 chr9 28110491 28110764 -114160680 + L1ME LINE L1 5536 5839 -282 270 256 11 111 chr9 28111138 28111228 -114160216 + L2 LINE L2 3136 3216 -56 2141 63 56 7 chr9 28112009 28112294 -114159150 + AluY SINE Alu 1 299 -12 29 28 0 0 chr9 28113182 28113218 -114158226 + AT_rich Low_complexity Low_complexity 1 36 0 25 65 0 0 chr9 28113309 28113355 -114158089 + AT_rich Low_complexity Low_complexity 1 46 0 368 246 92 8 chr9 28113444 28113574 -114157870 + MER103 DNA DNA 2 142 -24 373 263 42 34 chr9 28113784 28113902 -114157542 + MLT1J LTR MaLR 1 119 -392 286 298 67 0 chr9 28114370 28114474 -114156970 + LTR67 LTR ERVL 433 543 -14 1821 211 103 29 chr9 28114547 28115031 -114156413 + MLT2B1 LTR ERVL 1 520 0 223 314 100 14 chr9 28116244 28116384 -114155060 + MIR SINE MIR 98 249 -13 482 353 120 15 chr9 28117197 28117605 -114153839 + L2 LINE L2 2426 2876 -438 2148 123 0 7 chr9 28117864 28118172 -114153272 + AluSg SINE Alu 1 306 -4 1241 138 0 0 chr9 28118513 28118702 -114152742 + AluSg/x SINE Alu 124 312 0 8203 50 8 227 chr9 28119295 28121068 -114150376 - SVA Other Other -2 1384 1 718 171 85 8 chr9 28121181 28121310 -114150134 - FRAM SINE Alu -22 154 16 925 190 65 0 chr9 28122838 28123022 -114148422 + MER3 DNA MER1_type 10 205 -4 1040 305 96 47 chr9 28123084 28123885 -114147559 - HAL1 LINE L1 -1496 1011 172 246 179 0 0 chr9 28124085 28124141 -114147303 + (TGGA)n Simple_repeat Simple_repeat 1 56 0 2545 57 0 0 chr9 28124159 28124457 -114146987 - AluY SINE Alu -13 298 1 600 252 69 13 chr9 28125151 28125310 -114146134 - MIR3 SINE MIR -7 201 34 710 281 13 45 chr9 28125501 28125725 -114145719 + MIR SINE MIR 20 236 -26 332 312 89 13 chr9 28126516 28126673 -114144771 - MIR3 SINE MIR -10 198 30 389 318 218 0 chr9 28126729 28126899 -114144545 - L2 LINE L2 -2531 783 577 220 387 0 0 chr9 28129512 28129587 -114141857 - L2 LINE L2 -2 3270 3196 475 311 42 37 chr9 28129646 28129836 -114141608 + MIR3 SINE MIR 9 199 -9 350 332 80 25 chr9 28130126 28130325 -114141119 - MIR SINE MIR -49 213 4 24 32 0 0 chr9 28131537 28131568 -114139876 + AT_rich Low_complexity Low_complexity 1 31 0 215 306 32 0 chr9 28132137 28132199 -114139245 + L2 LINE L2 3209 3272 0 358 331 22 39 chr9 28133093 28133208 -114138236 + MIR SINE MIR 42 154 -108 919 275 60 68 chr9 28133208 28133662 -114137782 + MLT1J2 LTR MaLR 1 450 0 358 331 22 39 chr9 28133662 28133727 -114137717 + MIR SINE MIR 154 219 -43 2000 109 14 3 chr9 28133730 28134013 -114137431 + AluSp SINE Alu 5 290 -23 2164 114 0 7 chr9 28134025 28134324 -114137120 + AluSc SINE Alu 1 297 -12 324 342 45 19 chr9 28135225 28135380 -114136064 - MIR SINE MIR -11 251 93 227 167 48 24 chr9 28136031 28136115 -114135329 + (CACAC)n Simple_repeat Simple_repeat 1 86 0 618 233 62 28 chr9 28136253 28136429 -114135015 + LTR53 LTR ERVL 338 519 0 545 250 17 0 chr9 28138086 28138202 -114133242 + FLAM_A SINE Alu 1 118 -15 813 276 74 87 chr9 28138217 28138327 -114133117 - MLT1G LTR MaLR -52 538 428 726 238 119 10 chr9 28138327 28138520 -114132924 - MER58C DNA MER1_type -1 214 1 813 276 74 87 chr9 28138520 28138926 -114132518 - MLT1G LTR MaLR -162 428 1 21 0 0 0 chr9 28139705 28139726 -114131718 + AT_rich Low_complexity Low_complexity 1 21 0 274 260 13 39 chr9 28140179 28140256 -114131188 + MIR3 SINE MIR 125 199 -9 21 0 0 0 chr9 28140912 28140933 -114130511 + AT_rich Low_complexity Low_complexity 1 21 0 1901 152 33 0 chr9 28142024 28142326 -114129118 + AluSx SINE Alu 1 312 0 216 138 52 69 chr9 28142909 28142967 -114128477 + L2 LINE L2 3257 3313 0 597 308 68 13 chr9 28143171 28143405 -114128039 + MIR SINE MIR 3 249 -13 21 0 0 0 chr9 28143469 28143490 -114127954 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr9 28143565 28143597 -114127847 + AT_rich Low_complexity Low_complexity 1 32 0 231 114 0 0 chr9 28144167 28144211 -114127233 + (T)n Simple_repeat Simple_repeat 1 44 0 21 57 0 0 chr9 28145180 28145215 -114126229 + AT_rich Low_complexity Low_complexity 1 35 0 21 71 0 0 chr9 28146602 28146644 -114124800 + AT_rich Low_complexity Low_complexity 1 42 0 211 306 97 0 chr9 28147603 28147727 -114123717 - MIR SINE MIR -58 204 69 2487 84 0 0 chr9 28148687 28148998 -114122446 - AluY SINE Alu 0 311 1 300 342 173 27 chr9 28149806 28150101 -114121343 - L2 LINE L2 0 3272 2935 42411 36 22 1 chr9 28150887 28156912 -114114532 + L1PA3 LINE L1 1 6154 -1 22 0 0 0 chr9 28157715 28157737 -114113707 + AT_rich Low_complexity Low_complexity 1 22 0 448 311 34 28 chr9 28158927 28159145 -114112299 - MIR SINE MIR -34 228 9 1807 169 0 10 chr9 28159684 28159980 -114111464 - AluJo SINE Alu -13 299 7 22 0 0 0 chr9 28160087 28160109 -114111335 + AT_rich Low_complexity Low_complexity 1 22 0 2045 133 3 0 chr9 28160241 28160543 -114110901 - AluY SINE Alu -8 303 1 22 35 0 0 chr9 28160916 28160945 -114110499 + AT_rich Low_complexity Low_complexity 1 29 0 328 361 9 69 chr9 28161462 28161678 -114109766 + MIR SINE MIR 47 249 -13 3398 137 33 50 chr9 28162362 28162486 -114108958 - LTR26 LTR ERV1 0 603 478 3467 109 58 0 chr9 28162486 28163034 -114108410 - LTR19B LTR ERV1 0 580 1 3398 137 33 50 chr9 28163034 28163523 -114107921 - LTR26 LTR ERV1 -125 478 1 393 221 0 0 chr9 28164329 28164415 -114107029 - L1P LINE L1 -3420 2726 2641 384 283 6 17 chr9 28164422 28164595 -114106849 + L1P LINE L1 2747 2917 -3229 * 5217 132 23 9 chr9 28164586 28165442 -114106002 + L1PA15 LINE L1 5293 6160 -5 2187 253 47 0 chr9 28166332 28166870 -114104574 + MLT1F1 LTR MaLR 1 563 -4 2125 129 17 8 chr9 28167915 28168271 -114103173 + L1MA8 LINE L1 5931 6289 -2 31 26 0 0 chr9 28168271 28168309 -114103135 + AT_rich Low_complexity Low_complexity 1 38 0 225 194 32 16 chr9 28169069 28169131 -114102313 + (TA)n Simple_repeat Simple_repeat 1 63 0 21 0 0 0 chr9 28169383 28169404 -114102040 + AT_rich Low_complexity Low_complexity 1 21 0 2175 98 0 19 chr9 28170065 28170372 -114101072 - AluY SINE Alu -8 303 3 488 270 16 0 chr9 28171220 28171346 -114100098 - MIR SINE MIR -4 258 131 26 30 0 0 chr9 28171922 28171955 -114099489 + AT_rich Low_complexity Low_complexity 1 33 0 4212 158 16 11 chr9 28172484 28173192 -114098252 - MER50 LTR ERV1 -23 711 1 340 306 37 9 chr9 28173261 28173369 -114098075 + MIR SINE MIR 36 146 -62 336 336 17 8 chr9 28175762 28175881 -114095563 - MIR SINE MIR -123 139 20 2120 220 5 36 chr9 28176582 28176654 -114094790 - L1P LINE L1 -1070 5076 5003 1952 100 100 0 chr9 28176654 28176924 -114094520 - AluSq SINE Alu -12 301 5 2120 220 5 36 chr9 28176924 28177409 -114094035 - L1P LINE L1 -1143 5003 4536 354 64 0 0 chr9 28177616 28177663 -114093781 - MADE1 DNA Mariner -3 77 31 26 50 0 0 chr9 28178174 28178214 -114093230 + AT_rich Low_complexity Low_complexity 1 40 0 27278 114 10 46 chr9 28178217 28184666 -114086778 + L1PA7 LINE L1 5 6154 0 335 356 10 0 chr9 28184830 28184931 -114086513 + L2 LINE L2 3117 3218 -54 482 277 48 48 chr9 28185606 28185855 -114085589 + L1M4 LINE L1 14 262 -6280 5006 242 51 53 chr9 28185885 28188607 -114082837 - L1M4c LINE L1 -3437 3207 359 604 91 0 0 chr9 28188607 28188695 -114082749 + L1PA13 LINE L1 6073 6160 -3 5006 242 51 53 chr9 28188695 28189005 -114082439 - L1M4c LINE L1 -6285 359 50 5034 180 12 34 chr9 28189019 28191083 -114080361 - L1PA16 LINE L1 -9 6157 4125 194 0 0 37 chr9 28191175 28191202 -114080242 + (CAAAAA)n Simple_repeat Simple_repeat 3 28 0 605 321 57 22 chr9 28191270 28191638 -114079806 + L1M4 LINE L1 485 865 -5677 1966 240 42 54 chr9 28191712 28192378 -114079066 + L1M4 LINE L1 879 1537 -5005 2054 125 7 7 chr9 28192378 28192675 -114078769 + AluSx SINE Alu 1 297 -15 1966 240 42 54 chr9 28192675 28192745 -114078699 + L1M4 LINE L1 1537 1606 -4936 242 387 76 0 chr9 28192748 28192867 -114078577 + MER5B DNA MER1_type 49 176 -2 242 315 120 28 chr9 28192878 28192986 -114078458 - MER5B DNA MER1_type -1 177 60 1672 128 4 51 chr9 28193014 28193287 -114078157 - AluSq SINE Alu -53 260 1 188 160 260 0 chr9 28193289 28193339 -114078105 - MER5B DNA MER1_type -115 63 1 221 349 12 12 chr9 28195582 28195665 -114075779 + L2 LINE L2 2957 3039 -233 185 370 9 19 chr9 28196145 28196253 -114075191 + L2 LINE L2 2904 3010 -262 192 125 0 0 chr9 28197779 28197811 -114073633 + (T)n Simple_repeat Simple_repeat 1 32 0 2252 123 0 0 chr9 28197820 28198130 -114073314 - AluSg SINE Alu 0 310 1 876 342 76 13 chr9 28198487 28199109 -114072335 + L2 LINE L2 2642 3313 0 195 189 27 0 chr9 28199264 28199301 -114072143 + L2 LINE L2 3213 3250 -22 237 317 10 29 chr9 28200668 28200772 -114070672 + MIR SINE MIR 13 114 -148 221 320 40 0 chr9 28200818 28200893 -114070551 + MIR SINE MIR 125 202 -60 225 0 0 0 chr9 28200942 28200967 -114070477 + (CA)n Simple_repeat Simple_repeat 2 26 0 199 147 173 53 chr9 28202065 28202140 -114069304 - L2 LINE L2 -4 3268 3185 544 300 141 14 chr9 28202364 28202584 -114068860 + MIR SINE MIR 15 262 0 979 208 84 44 chr9 28203029 28203391 -114068053 + LTR52 LTR ERVL 1 418 -3 355 289 25 16 chr9 28203707 28203828 -114067616 - MER94 DNA DNA -3 131 10 302 337 105 16 chr9 28204139 28204329 -114067115 + MIR SINE MIR 53 259 -3 341 276 16 8 chr9 28204450 28204573 -114066871 + L1ME LINE L1 5536 5659 -462 184 360 92 7 chr9 28204668 28204821 -114066623 + MIR SINE MIR 97 262 0 2152 119 0 3 chr9 28205001 28205304 -114066140 - AluSx SINE Alu -10 302 1 195 252 63 158 chr9 28206945 28207072 -114064372 - MIR3 SINE MIR -1 207 93 2412 92 0 0 chr9 28207112 28207418 -114064026 - AluSg SINE Alu -4 306 1 300 91 0 0 chr9 28207836 28207880 -114063564 + (CA)n Simple_repeat Simple_repeat 2 45 0 225 338 100 12 chr9 28209445 28209525 -114061919 + L2 LINE L2 3148 3234 -38 321 302 42 0 chr9 28209748 28209844 -114061600 + MIR SINE MIR 89 188 -74 445 192 13 0 chr9 28212097 28212175 -114059269 - Tigger7 DNA MER2_type -2405 82 4 252 209 90 0 chr9 28212194 28212261 -114059183 - Zaphod DNA AcHobo -3304 727 655 1035 167 39 0 chr9 28212310 28212490 -114058954 + MER3 DNA MER1_type 10 196 -13 1606 275 22 0 chr9 28212504 28212904 -114058540 - Zaphod DNA AcHobo -3461 570 162 318 87 0 0 chr9 28212950 28212996 -114058448 + (TG)n Simple_repeat Simple_repeat 1 46 0 369 319 85 0 chr9 28214208 28214349 -114057095 + L2 LINE L2 3128 3280 -33 773 280 16 11 chr9 28214392 28214581 -114056863 - MIR SINE MIR -65 197 8 2566 227 27 22 chr9 28214825 28215379 -114056065 + MER68 LTR ERV1 6 562 0 427 318 35 17 chr9 28215570 28215743 -114055701 + MIR SINE MIR 85 260 -2 214 200 22 0 chr9 28216595 28216640 -114054804 + GA-rich Low_complexity Low_complexity 3 48 0 347 344 62 16 chr9 28216955 28217126 -114054318 - MIR SINE MIR -61 147 14 204 423 0 21 chr9 28217944 28218041 -114053403 - MIR SINE MIR -145 117 23 294 305 136 26 chr9 28218402 28218556 -114052888 - L2 LINE L2 -1 3271 3101 337 327 142 58 chr9 28219201 28219547 -114051897 + HAL1 LINE L1 1 375 -2132 1020 300 105 15 chr9 28219550 28220845 -114050599 + HAL1 LINE L1 581 2045 -462 1691 174 16 19 chr9 28221049 28221360 -114050084 - AluSx SINE Alu -2 310 1 25 51 0 0 chr9 28223860 28223899 -114047545 + AT_rich Low_complexity Low_complexity 1 39 0 2805 19 0 6 chr9 28224233 28224553 -114046891 - AluYb8 SINE Alu 0 318 1 460 368 63 9 chr9 28227001 28227224 -114044220 + MIR SINE MIR 22 256 -6 183 333 67 0 chr9 28231976 28232036 -114039408 + L2 LINE L2 3210 3273 -40 302 370 0 7 chr9 28232461 28232596 -114038848 - L2 LINE L2 -444 2870 2737 363 260 29 10 chr9 28232705 28232809 -114038635 + MER94 DNA DNA 24 129 -5 349 219 0 122 chr9 28233461 28233625 -114037819 + L1ME4a LINE L1 5843 5986 -135 549 275 150 0 chr9 28233729 28233889 -114037555 - MER5A DNA MER1_type -2 187 4 628 252 56 0 chr9 28233916 28234059 -114037385 - MER5B DNA MER1_type -16 162 12 25 31 0 0 chr9 28234077 28234109 -114037335 + AT_rich Low_complexity Low_complexity 1 32 0 516 113 21 54 chr9 28234114 28234300 -114037144 + (TA)n Simple_repeat Simple_repeat 1 180 0 1708 152 37 10 chr9 28234417 28234713 -114036731 + MER57A LTR ERV1 100 403 0 274 306 56 9 chr9 28234748 28234856 -114036588 + MIR SINE MIR 100 212 -50 2530 65 0 0 chr9 28235646 28235956 -114035488 + AluY SINE Alu 1 310 -1 935 207 163 82 chr9 28236303 28236721 -114034723 - MER66A LTR ERV1 -3 475 97 191 317 50 50 chr9 28236906 28237007 -114034437 + MIR SINE MIR 113 213 -49 261 201 122 79 chr9 28237114 28237253 -114034191 - MLT1L LTR MaLR 0 615 471 1739 242 95 9 chr9 28237333 28237994 -114033450 + L1ME2 LINE L1 3723 4440 -1706 1131 227 0 49 chr9 28237988 28238219 -114033225 + L1ME2 LINE L1 5639 5855 -309 * 2019 121 10 36 chr9 28238219 28238524 -114032920 - AluSq SINE Alu -14 299 3 1131 227 0 49 chr9 28238524 28238578 -114032866 + L1ME2 LINE L1 5855 5910 -254 255 119 0 0 chr9 28238652 28238694 -114032750 + MER3 DNA MER1_type 8 49 -160 22 35 0 0 chr9 28239407 28239436 -114032008 + AT_rich Low_complexity Low_complexity 1 29 0 282 256 6 122 chr9 28241916 28242096 -114029348 - MLT1I LTR MaLR -22 387 229 25 31 0 0 chr9 28242403 28242435 -114029009 + AT_rich Low_complexity Low_complexity 1 32 0 4987 170 30 41 chr9 28242444 28244597 -114026847 - L1MA9 LINE L1 0 7731 5594 14526 192 25 19 chr9 28244609 28248516 -114022928 - L1PB1 LINE L1 -8 6859 2754 5231 58 37 11 chr9 28248516 28249220 -114022224 - LTR30 LTR ERV1 0 722 1 14526 192 25 19 chr9 28249220 28251116 -114020328 - L1PB1 LINE L1 -4113 2754 872 1078 275 65 50 chr9 28251121 28251656 -114019788 + L1PBa LINE L1 9 551 -6312 6637 230 75 33 chr9 28251759 28254712 -114016732 - L1MA9 LINE L1 -1964 5601 2533 565 184 37 9 chr9 28254720 28254829 -114016615 + MER46A DNA MER2_type 1 112 -124 4551 133 43 19 chr9 28255174 28256002 -114015442 - Tigger3(Golem) DNA MER2_type -1 3028 2181 1576 232 46 81 chr9 28255986 28256541 -114014903 + MLT1F1 LTR MaLR 33 567 0 * 2141 111 3 10 chr9 28256716 28257013 -114014431 + AluSq SINE Alu 1 295 -18 2268 107 0 0 chr9 28257069 28257367 -114014077 + AluSc SINE Alu 2 299 -10 325 155 63 0 chr9 28257367 28257575 -114013869 + (TA)n Simple_repeat Simple_repeat 1 221 0 188 352 127 0 chr9 28258785 28258927 -114012517 + MIR SINE MIR 103 262 0 2878 157 72 9 chr9 28259005 28259573 -114011871 + L1MB1 LINE L1 5565 6168 0 24 0 0 0 chr9 28259577 28259601 -114011843 + AT_rich Low_complexity Low_complexity 1 24 0 463 317 113 14 chr9 28259964 28260185 -114011259 - MIR SINE MIR -12 250 8 513 273 89 74 chr9 28260223 28260670 -114010774 - LTR16A1 LTR ERVL 0 457 4 248 141 0 56 chr9 28262541 28262612 -114008832 + L1MC4 LINE L1 6637 6703 -1339 216 325 0 12 chr9 28263305 28263385 -114008059 + (TATATG)n Simple_repeat Simple_repeat 5 83 0 234 0 0 0 chr9 28263385 28263411 -114008033 + (TG)n Simple_repeat Simple_repeat 1 26 0 537 253 81 0 chr9 28264181 28264355 -114007089 + MER5A DNA MER1_type 2 189 0 213 368 94 9 chr9 28264438 28264544 -114006900 - MIR3 SINE MIR -7 201 87 299 313 42 0 chr9 28265191 28265287 -114006157 - MIR SINE MIR -74 188 89 220 319 129 36 chr9 28266222 28266470 -114004974 + L2 LINE L2 2826 3096 -176 227 366 168 0 chr9 28267917 28268018 -114003426 - L2 LINE L2 -16 3256 3139 777 204 25 181 chr9 28268077 28268518 -114002926 + MLT1A2 LTR MaLR 1 372 -2 217 398 73 8 chr9 28269543 28269666 -114001778 - L2 LINE L2 -21 3251 3121 373 266 95 38 chr9 28269866 28270024 -114001420 - MIR SINE MIR -52 210 44 262 303 172 5 chr9 28270043 28270241 -114001203 - MIR SINE MIR -1 261 31 30 27 0 0 chr9 28271495 28271532 -113999912 + AT_rich Low_complexity Low_complexity 1 37 0 430 240 0 0 chr9 28272186 28272261 -113999183 + L2 LINE L2 3198 3272 0 2433 82 0 0 chr9 28272926 28273231 -113998213 + AluSg SINE Alu 1 305 -5 264 288 14 0 chr9 28273995 28274068 -113997376 - L2 LINE L2 -47 3266 3193 1200 273 86 67 chr9 28274095 28275071 -113996373 - L1ME LINE L1 -4981 1089 95 207 0 0 0 chr9 28275799 28275822 -113995622 + (CA)n Simple_repeat Simple_repeat 2 24 0 22 35 0 0 chr9 28276255 28276284 -113995160 + AT_rich Low_complexity Low_complexity 1 29 0 1206 232 134 46 chr9 28276451 28276485 -113994959 - MLT2B1 LTR ERVL 0 520 490 180 0 0 0 chr9 28276485 28276505 -113994939 + (GA)n Simple_repeat Simple_repeat 1 20 0 252 0 0 0 chr9 28276507 28276535 -113994909 + (TG)n Simple_repeat Simple_repeat 2 29 0 1206 232 134 46 chr9 28276535 28276975 -113994469 - MLT2B1 LTR ERVL -30 490 1 330 327 0 9 chr9 28277448 28277555 -113993889 + MIR SINE MIR 41 146 -116 183 331 8 85 chr9 28277635 28277765 -113993679 - L2 LINE L2 -12 3260 3141 253 263 38 0 chr9 28277835 28277915 -113993529 + L1M4 LINE L1 5150 5232 -914 335 286 60 38 chr9 28278110 28278295 -113993149 + L1M4 LINE L1 2120 2308 -3838 844 288 58 56 chr9 28278359 28278450 -113992994 - L2 LINE L2 0 3313 3224 1228 206 121 0 chr9 28278450 28278722 -113992722 + AluJo SINE Alu 4 308 -4 844 288 58 56 chr9 28278722 28279043 -113992401 - L2 LINE L2 -89 3224 2900 624 301 83 0 chr9 28279032 28279248 -113992196 - L2 LINE L2 -563 2751 2518 * 2200 108 0 3 chr9 28279248 28279580 -113991864 + AluSq SINE Alu 1 331 0 1605 151 63 0 chr9 28279589 28279874 -113991570 + L1MA9 LINE L1 5971 6273 -39 307 232 71 18 chr9 28279894 28280006 -113991438 + Charlie7 DNA MER1_type 563 680 -1932 24 53 0 0 chr9 28280006 28280044 -113991400 + AT_rich Low_complexity Low_complexity 1 38 0 307 273 51 51 chr9 28280068 28280321 -113991123 + L1M4 LINE L1 2843 3095 -3051 5044 70 2 0 chr9 28280638 28281553 -113989891 - L1PA5 LINE L1 -512 5642 4726 4052 58 0 12 chr9 28281553 28282071 -113989373 + L1PA5 LINE L1 5640 6151 -3 25 0 0 0 chr9 28282071 28282096 -113989348 + AT_rich Low_complexity Low_complexity 1 25 0 225 383 31 39 chr9 28282216 28282344 -113989100 + L2 LINE L2 3136 3262 -10 359 300 0 42 chr9 28282387 28282507 -113988937 + MIR SINE MIR 33 147 -61 24 0 0 0 chr9 28282542 28282566 -113988878 + AT_rich Low_complexity Low_complexity 1 24 0 746 245 159 32 chr9 28282726 28283226 -113988218 + MLT1G1 LTR MaLR 7 590 0 623 276 68 41 chr9 28284857 28285078 -113986366 + MIR SINE MIR 6 232 -30 335 200 57 14 chr9 28285175 28285245 -113986199 - MIR SINE MIR -165 97 25 331 333 59 7 chr9 28285314 28285449 -113985995 - MIR3 SINE MIR -64 144 3 532 190 152 13 chr9 28285653 28285788 -113985656 + MER5A DNA MER1_type 4 160 -29 907 164 0 99 chr9 28285813 28286045 -113985399 - MER20 DNA MER1_type -4 215 7 283 236 0 56 chr9 28286245 28286334 -113985110 + LTR16C LTR ERVL 371 488 -3 24 32 0 0 chr9 28287074 28287105 -113984339 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr9 28287874 28287897 -113983547 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr9 28288201 28288230 -113983214 + AT_rich Low_complexity Low_complexity 1 29 0 614 280 105 18 chr9 28289553 28289839 -113981605 - MLT1J LTR MaLR -160 351 41 360 0 0 0 chr9 28289865 28289905 -113981539 + (CA)n Simple_repeat Simple_repeat 2 41 0 2454 54 0 3 chr9 28290407 28290705 -113980739 - AluY SINE Alu -14 297 1 4442 193 45 12 chr9 28290711 28292216 -113979228 - L1P4 LINE L1 -467 7137 5589 1037 185 15 0 chr9 28292210 28292415 -113979029 - L1 LINE L1 -1865 4281 4074 * 1814 104 92 19 chr9 28292429 28292746 -113978698 + THE1C LTR MaLR 1 340 -35 8879 121 55 36 chr9 28292746 28294277 -113977167 + THE1C-int LTR MaLR 20 1580 0 2139 144 22 16 chr9 28294277 28294646 -113976798 + THE1C LTR MaLR 1 371 -4 2556 240 10 0 chr9 28294647 28295271 -113976173 - L1P4 LINE L1 -2080 5504 4875 4654 225 34 28 chr9 28295302 28297177 -113974267 - L1P4 LINE L1 -3525 4059 2204 377 316 5 10 chr9 28297431 28297628 -113973816 - L1P4 LINE L1 -5269 2305 2084 650 299 53 37 chr9 28297676 28298054 -113973390 - L1P4 LINE L1 -6209 1365 982 239 183 0 17 chr9 28298121 28298181 -113973263 - L1MCa LINE L1 -4362 2064 2006 * 249 299 0 0 chr9 28298159 28298246 -113973198 - L1MC4 LINE L1 -1342 6980 6894 264 200 0 0 chr9 28298248 28298308 -113973136 + (TA)n Simple_repeat Simple_repeat 2 61 0 214 211 0 0 chr9 28298358 28298396 -113973048 + (TA)n Simple_repeat Simple_repeat 1 38 0 693 230 34 49 chr9 28298399 28298664 -113972780 - L1M4 LINE L1 -944 5202 4942 342 300 0 33 chr9 28298677 28298797 -113972647 - MER21B LTR ERV1 -415 448 333 321 264 118 18 chr9 28298853 28298963 -113972481 + L2 LINE L2 3186 3306 -7 359 264 164 0 chr9 28299141 28299281 -113972163 - MIR SINE MIR -25 237 75 305 323 111 14 chr9 28299935 28300116 -113971328 + MIR SINE MIR 8 203 -59 2322 198 20 6 chr9 28302368 28302909 -113968535 + L1MB8 LINE L1 5608 6156 -22 350 261 169 8 chr9 28303727 28303857 -113967587 - L2 LINE L2 -3 3310 3160 195 171 24 24 chr9 28304006 28304047 -113967397 - L2 LINE L2 -375 2939 2899 192 302 101 82 chr9 28304166 28304434 -113967010 - L2 LINE L2 -585 2729 2457 460 267 34 0 chr9 28304762 28304908 -113966536 + LTR16A1 LTR ERVL 307 457 0 1064 298 92 49 chr9 28305053 28305667 -113965777 + L2 LINE L2 1059 1646 -1667 486 0 0 0 chr9 28305667 28305721 -113965723 + (TG)n Simple_repeat Simple_repeat 2 55 0 1064 298 92 49 chr9 28305721 28305803 -113965641 + L2 LINE L2 1646 3313 0 224 167 21 0 chr9 28306088 28306136 -113965308 + (TTA)n Simple_repeat Simple_repeat 2 50 0 208 287 85 32 chr9 28306769 28306863 -113964581 - MIR SINE MIR -64 144 46 252 158 0 70 chr9 28307709 28307766 -113963678 + L2 LINE L2 3261 3313 0 333 291 47 0 chr9 28310645 28310731 -113960713 - L2 LINE L2 -14 3258 3169 225 319 155 33 chr9 28311481 28311785 -113959659 + L2 LINE L2 2632 2972 -342 216 0 0 0 chr9 28311924 28311948 -113959496 + (T)n Simple_repeat Simple_repeat 1 24 0 1818 54 5 0 chr9 28311964 28312187 -113959257 - AluY SINE Alu -87 224 1 489 237 44 0 chr9 28312249 28312363 -113959081 + MER58B DNA MER1_type 222 340 -1 321 252 194 0 chr9 28312365 28312468 -113958976 + L2 LINE L2 3191 3313 0 560 247 98 81 chr9 28313963 28314259 -113957185 - MLT1J LTR MaLR -87 424 124 216 0 0 0 chr9 28314259 28314283 -113957161 + (A)n Simple_repeat Simple_repeat 1 24 0 214 406 0 10 chr9 28314441 28314537 -113956907 + L2 LINE L2 3136 3230 -42 1750 179 17 17 chr9 28315126 28315477 -113955967 + MLT1A1 LTR MaLR 15 365 0 357 278 40 53 chr9 28315706 28315857 -113955587 + MIR SINE MIR 26 174 -88 254 356 91 0 chr9 28317759 28317891 -113953553 - L2 LINE L2 -2 3311 3168 1189 266 14 36 chr9 28317960 28318374 -113953070 - L1ME1 LINE L1 -67 6099 5695 256 312 75 0 chr9 28318752 28318845 -113952599 + L2 LINE L2 3168 3267 -5 316 300 97 48 chr9 28319525 28319752 -113951692 + L2 LINE L2 3076 3313 0 392 331 106 31 chr9 28320188 28320442 -113951002 - L3 LINE CR1 -499 1078 806 221 296 91 38 chr9 28321836 28321968 -113949476 - MIR SINE MIR -123 139 1 1005 341 44 13 chr9 28321980 28322431 -113949013 - L3 LINE CR1 -99 1478 1014 345 294 147 42 chr9 28322831 28323096 -113948348 - L3 LINE CR1 -689 888 596 549 294 138 4 chr9 28323368 28323599 -113947845 - MIR SINE MIR 0 262 1 488 316 29 19 chr9 28325130 28325339 -113946105 - MIR SINE MIR 0 262 52 317 320 111 0 chr9 28326185 28326338 -113945106 + MIR SINE MIR 87 256 -6 1149 301 98 58 chr9 28326621 28327271 -113944173 - MER115 DNA AcHobo -1 692 17 551 200 185 0 chr9 28328066 28328196 -113943248 - MER5B DNA MER1_type -22 156 3 500 246 16 0 chr9 28328412 28328538 -113942906 + MER94 DNA DNA 7 134 0 277 355 169 0 chr9 28328564 28328688 -113942756 + L2 LINE L2 3119 3263 -9 748 252 117 22 chr9 28328703 28328933 -113942511 + MIR SINE MIR 11 262 0 459 274 20 27 chr9 28329023 28329169 -113942275 - MIR SINE MIR 0 262 118 927 146 43 0 chr9 28329726 28329911 -113941533 + L1PBa LINE L1 3 195 -6668 * 2989 113 157 182 chr9 28329896 28330395 -113941049 + L1PBa LINE L1 620 1130 -5733 2306 75 17 0 chr9 28330395 28330688 -113940756 - AluSg1 SINE Alu -11 298 1 1174 139 0 0 chr9 28330688 28330854 -113940590 - AluSq SINE Alu -14 299 134 2267 111 0 10 chr9 28330854 28331160 -113940284 - AluSq SINE Alu -10 303 1 2989 113 157 182 chr9 28331160 28331522 -113939922 + L1PBa LINE L1 1127 1623 -5240 19269 33 0 0 chr9 28331622 28334065 -113937379 + L1P LINE L1 2964 5406 -1456 2353 102 3 0 chr9 28334097 28334401 -113937043 + AluSp SINE Alu 1 305 -8 290 325 24 10 chr9 28334417 28334623 -113936821 + L1M4 LINE L1 2315 2523 -3623 27 0 0 0 chr9 28334749 28334776 -113936668 + AT_rich Low_complexity Low_complexity 1 27 0 324 314 46 26 chr9 28334776 28334929 -113936515 + L1M4 LINE L1 2645 2800 -3346 1170 126 30 0 chr9 28334953 28335152 -113936292 - L1MA1 LINE L1 0 6302 6098 408 283 99 7 chr9 28335279 28335431 -113936013 - L2 LINE L2 -5 3308 3143 293 313 24 0 chr9 28336043 28336126 -113935318 - MIR3 SINE MIR -14 194 110 203 0 37 0 chr9 28336269 28336296 -113935148 + (TG)n Simple_repeat Simple_repeat 1 28 0 1878 162 123 3 chr9 28336371 28336730 -113934714 - MLT2C2 LTR ERVL -62 402 1 293 370 81 6 chr9 28336741 28336914 -113934530 - MIR SINE MIR -75 187 2 374 116 246 0 chr9 28337195 28337264 -113934180 + MLT2D LTR ERVL 58 143 -271 280 236 28 0 chr9 28337266 28337338 -113934106 - MER4-int LTR ERV1 -5423 1175 1102 643 296 37 23 chr9 28338192 28338408 -113933036 + MIR SINE MIR 32 250 -12 1766 66 8 12 chr9 28341396 28341638 -113929806 - AluY SINE Alu -35 276 36 21 0 0 0 chr9 28341639 28341660 -113929784 + AT_rich Low_complexity Low_complexity 1 21 0 928 80 0 0 chr9 28341680 28341793 -113929651 - AluSg/x SINE Alu -20 292 180 25 0 0 0 chr9 28341818 28341843 -113929601 + AT_rich Low_complexity Low_complexity 1 25 0 5568 146 22 20 chr9 28342000 28343034 -113928410 - L1MA4 LINE L1 -11 6289 5254 7772 177 22 22 chr9 28343047 28344689 -113926755 - L1MA4 LINE L1 -939 5207 3567 1573 310 59 19 chr9 28345334 28346452 -113924992 - L1M4 LINE L1 -2196 3950 2788 2163 203 35 84 chr9 28346462 28346609 -113924835 + L1M1 LINE L1 17 170 -7395 242 28 0 28 chr9 28346609 28346645 -113924799 + (TTA)n Simple_repeat Simple_repeat 2 36 0 5650 124 42 24 chr9 28346653 28348652 -113922792 - SVA Other Other -518 1369 51 234 0 0 0 chr9 28348656 28348682 -113922762 + (GGGAGA)n Simple_repeat Simple_repeat 6 31 0 2163 203 35 84 chr9 28348682 28349121 -113922323 + L1M1 LINE L1 180 592 -6973 5800 132 12 34 chr9 28349274 28349523 -113921921 - L1MA1 LINE L1 -278 7443 7190 1950 75 60 0 chr9 28349523 28349816 -113921628 - AluY SINE Alu 0 309 1 5800 132 12 34 chr9 28349816 28350921 -113920523 - L1MA1 LINE L1 -531 7190 6136 1937 79 45 21 chr9 28350921 28351212 -113920232 - AluY SINE Alu -13 298 1 5800 132 12 34 chr9 28351212 28351707 -113919737 - L1MA1 LINE L1 -1585 6136 5632 4608 110 10 7 chr9 28351816 28352544 -113918900 - L1MA1 LINE L1 -4487 3078 2349 3394 163 8 0 chr9 28352536 28353131 -113918313 - L1P LINE L1 -3170 2976 2377 * 4081 186 41 95 chr9 28353146 28354696 -113916748 - L1MA1 LINE L1 -5214 2351 625 21 0 0 0 chr9 28355410 28355431 -113916013 + AT_rich Low_complexity Low_complexity 1 21 0 324 348 37 18 chr9 28356047 28356211 -113915233 + L2 LINE L2 2921 3087 -185 225 292 34 0 chr9 28356816 28356905 -113914539 + L3b LINE CR1 1321 1412 -171 627 318 100 49 chr9 28357358 28358270 -113913174 + L1MEd LINE L1 8 965 -5154 692 242 21 47 chr9 28358280 28358470 -113912974 + MLT1F1 LTR MaLR 3 187 -355 460 176 0 17 chr9 28358490 28358609 -113912835 + CT-rich Low_complexity Low_complexity 2 118 0 1021 193 126 2 chr9 28358645 28358875 -113912569 + MLT1F1 LTR MaLR 256 560 -7 268 258 63 93 chr9 28358875 28359251 -113912193 + L1MEd LINE L1 979 1381 -4862 8366 197 21 1 chr9 28359521 28361671 -113909773 + L1M1 LINE L1 3231 5425 -2140 255 337 10 20 chr9 28362018 28362119 -113909325 - L2 LINE L2 0 3272 3173 482 335 38 8 chr9 28362399 28362599 -113908845 + MIR SINE MIR 3 206 -56 309 297 138 43 chr9 28362769 28363001 -113908443 + L2 LINE L2 3043 3296 -17 225 256 24 61 chr9 28363241 28363323 -113908121 + L2 LINE L2 3193 3271 -1 1005 173 17 11 chr9 28364613 28364792 -113906652 - AluJo SINE Alu -132 180 1 292 313 83 46 chr9 28365103 28365320 -113906124 + L2 LINE L2 2252 2476 -838 2266 110 0 16 chr9 28365528 28365845 -113905599 - AluSx SINE Alu 0 312 1 202 373 63 47 chr9 28366169 28366424 -113905020 + L2 LINE L2 2485 2743 -571 1314 173 79 47 chr9 28366868 28367145 -113904299 + AluJo SINE Alu 1 286 -26 186 189 0 0 chr9 28367647 28367684 -113903760 + A-rich Low_complexity Low_complexity 1 37 0 2717 26 0 3 chr9 28367734 28368042 -113903402 + AluYa5 SINE Alu 1 307 -4 1083 323 74 35 chr9 28370137 28370688 -113900756 + L3 LINE CR1 2 574 -1003 220 314 137 13 chr9 28370819 28370972 -113900472 + L3 LINE CR1 934 1105 -472 2011 156 6 16 chr9 28370975 28371295 -113900149 + MER1B DNA MER1_type 23 339 0 226 344 0 0 chr9 28371448 28371509 -113899935 + L3 LINE CR1 1411 1471 -106 21 0 0 0 chr9 28372040 28372061 -113899383 + AT_rich Low_complexity Low_complexity 1 21 0 969 191 22 16 chr9 28373052 28373235 -113898209 - MER5A DNA MER1_type 0 189 6 281 292 29 166 chr9 28373218 28373495 -113897949 + L2 LINE L2 3028 3266 -6 * 180 0 0 0 chr9 28373542 28373562 -113897882 + (GA)n Simple_repeat Simple_repeat 2 21 0 * 201 39 0 0 chr9 28373561 28373587 -113897857 + (TG)n Simple_repeat Simple_repeat 2 27 0 2052 162 26 6 chr9 28373592 28373932 -113897512 - MER7A DNA MER2_type 0 346 2 213 175 0 0 chr9 28373934 28373974 -113897470 + (TATATG)n Simple_repeat Simple_repeat 2 41 0 971 138 6 19 chr9 28374244 28374403 -113897041 - THE1-int LTR MaLR -183 1397 1241 302 192 0 0 chr9 28374667 28374719 -113896725 - MLT1E3 LTR MaLR -572 52 1 21 36 0 0 chr9 28374727 28374755 -113896689 + AT_rich Low_complexity Low_complexity 1 28 0 333 330 124 58 chr9 28374803 28375237 -113896207 - L3 LINE CR1 -24 1553 1091 263 260 40 20 chr9 28375296 28375396 -113896048 + L1P LINE L1 3828 3929 -2217 22 0 0 0 chr9 28375396 28375418 -113896026 + AT_rich Low_complexity Low_complexity 1 22 0 186 133 0 0 chr9 28375880 28375910 -113895534 + (TA)n Simple_repeat Simple_repeat 1 30 0 313 312 73 65 chr9 28375932 28376345 -113895099 + L1M4 LINE L1 4428 4843 -1303 311 285 114 19 chr9 28377150 28377308 -113894136 - L1MCb LINE L1 -4848 1197 1025 192 364 50 43 chr9 28379057 28379197 -113892247 + MIR SINE MIR 20 160 -102 23 0 0 0 chr9 28379197 28379220 -113892224 + AT_rich Low_complexity Low_complexity 1 23 0 232 206 44 44 chr9 28379346 28379414 -113892030 - MLT1G1 LTR MaLR -28 567 500 233 276 92 10 chr9 28379597 28379695 -113891749 - MLT1I LTR MaLR -240 169 64 34 0 0 0 chr9 28380099 28380133 -113891311 + AT_rich Low_complexity Low_complexity 1 34 0 225 0 0 0 chr9 28380133 28380158 -113891286 + (TA)n Simple_repeat Simple_repeat 2 26 0 7687 94 29 5 chr9 28380393 28381579 -113889865 + L1PB1 LINE L1 1529 2742 -4121 11061 187 15 13 chr9 28381591 28385024 -113886420 + L1PB1 LINE L1 3431 6864 -3 377 304 27 133 chr9 28385046 28385421 -113886023 - L2 LINE L2 -5 3267 2933 303 341 54 0 chr9 28386062 28386191 -113885253 - L2 LINE L2 -1 3312 3177 2827 182 56 14 chr9 28388183 28388772 -113882672 + L1MC3 LINE L1 6045 6658 -1127 1176 177 120 57 chr9 28388782 28389116 -113882328 + MLT1A1 LTR MaLR 11 365 0 3941 163 108 94 chr9 28389117 28389585 -113881859 + L1MC3 LINE L1 6655 7115 -670 309 171 40 26 chr9 28389585 28389661 -113881783 + MLT1F1 LTR MaLR 35 111 -456 3941 163 108 94 chr9 28389661 28390232 -113881212 + L1MC3 LINE L1 7115 7784 -1 197 282 28 56 chr9 28390484 28390555 -113880889 + L2 LINE L2 2932 3000 -272 409 235 0 0 chr9 28390556 28390637 -113880807 + MER63 DNA MER1_type 672 752 -310 524 281 21 46 chr9 28390822 28391019 -113880425 + MIR SINE MIR 33 222 -40 230 313 200 13 chr9 28391315 28391465 -113879979 - MIR SINE MIR -65 197 20 186 167 0 0 chr9 28392241 28392277 -113879167 + (CAATT)n Simple_repeat Simple_repeat 2 37 0 186 284 40 40 chr9 28392278 28392352 -113879092 - L2 LINE L2 -1 3312 3239 292 232 2 5 chr9 28392393 28392467 -113878977 + MIR SINE MIR 75 143 -65 290 351 18 9 chr9 28392515 28392626 -113878818 + MIR3 SINE MIR 12 123 -85 574 283 107 37 chr9 28393118 28393362 -113878082 + MLT1I LTR MaLR 100 360 -49 371 377 49 38 chr9 28393398 28393767 -113877677 - L2 LINE L2 -48 3224 2852 355 214 325 0 chr9 28393811 28393937 -113877507 - MIR SINE MIR -16 246 80 289 279 29 10 chr9 28393937 28394041 -113877403 - L2 LINE L2 -529 2785 2680 2068 123 31 0 chr9 28394965 28395257 -113876187 + AluSx SINE Alu 1 301 -11 2192 115 56 11 chr9 28395313 28395670 -113875774 + THE1C LTR MaLR 1 373 -2 24 0 0 0 chr9 28395720 28395744 -113875700 + AT_rich Low_complexity Low_complexity 1 24 0 23 33 0 0 chr9 28396173 28396203 -113875241 + AT_rich Low_complexity Low_complexity 1 30 0 664 266 15 70 chr9 28398764 28398963 -113872481 + MER5A DNA MER1_type 2 189 0 217 299 26 8 chr9 28398965 28399056 -113872388 - MIR SINE MIR -68 140 47 317 246 156 25 chr9 28399931 28400053 -113871391 + MIR SINE MIR 51 188 -74 533 238 25 0 chr9 28400063 28400185 -113871259 - MER94 DNA DNA -9 125 1 223 294 322 0 chr9 28400577 28400723 -113870721 - MIR SINE MIR -11 251 59 24 32 0 0 chr9 28400996 28401027 -113870417 + AT_rich Low_complexity Low_complexity 1 31 0 349 300 50 31 chr9 28401035 28401195 -113870249 - L1ME3 LINE L1 -276 5886 5724 248 149 0 21 chr9 28401223 28401270 -113870174 - HAL1 LINE L1 -358 2149 2104 1106 190 112 20 chr9 28401427 28401722 -113869722 - MER31A LTR ERV1 0 485 164 5660 166 36 10 chr9 28401722 28403287 -113868157 + L1MA4 LINE L1 4666 6286 -14 1032 136 5 15 chr9 28403287 28403485 -113867959 - L1MA8 LINE L1 -18 6273 6078 2738 71 0 0 chr9 28403831 28404183 -113867261 + L1PA6 LINE L1 5798 6149 -5 263 283 131 10 chr9 28404392 28404491 -113866953 + MIR SINE MIR 32 142 -120 202 333 0 0 chr9 28404647 28404704 -113866740 + MER5A DNA MER1_type 35 91 -98 308 320 227 20 chr9 28404897 28405100 -113866344 + MIR SINE MIR 6 250 -12 1209 113 72 23 chr9 28405123 28405312 -113866132 + L1MA1 LINE L1 6071 6274 -28 192 40 0 0 chr9 28405312 28405337 -113866107 + (TA)n Simple_repeat Simple_repeat 2 26 0 1209 113 72 23 chr9 28405337 28405368 -113866076 + L1MA1 LINE L1 6274 6302 0 597 269 137 23 chr9 28405594 28405813 -113865631 - MIR SINE MIR -2 260 17 1929 157 219 41 chr9 28406413 28406905 -113864539 + LTR18B LTR ERVL 1 580 -34 7249 51 2 2 chr9 28407108 28408194 -113863250 + L1P2 LINE L1 4457 5542 -612 244 321 10 114 chr9 28408750 28408943 -113862501 - L2 LINE L2 0 3272 3100 314 343 19 8 chr9 28410430 28410573 -113860871 + MIR SINE MIR 2 147 -67 1090 232 129 72 chr9 28410577 28411051 -113860393 + MLT1D LTR MaLR 5 505 0 272 297 0 33 chr9 28411446 28411537 -113859907 - MIR SINE MIR 0 262 175 22 0 0 0 chr9 28411797 28411819 -113859625 + AT_rich Low_complexity Low_complexity 1 22 0 259 329 53 86 chr9 28412002 28412339 -113859105 + L2 LINE L2 2934 3259 -13 224 367 0 0 chr9 28412428 28412507 -113858937 - L2 LINE L2 -3 3310 3232 498 214 0 19 chr9 28412636 28412739 -113858705 + MER5A DNA MER1_type 5 105 -84 190 255 0 0 chr9 28412751 28412798 -113858646 + MIR SINE MIR 216 262 0 714 255 124 92 chr9 28413336 28413826 -113857618 - MLT1J LTR MaLR -4 507 2 301 311 0 25 chr9 28413878 28413997 -113857447 - L2 LINE L2 -970 2344 2229 254 284 55 28 chr9 28414631 28414740 -113856704 + L3 LINE CR1 1092 1203 -374 4981 145 16 5 chr9 28414861 28416358 -113855086 + L1MA8 LINE L1 4592 6107 -184 1100 202 108 23 chr9 28416359 28416719 -113854725 + MSTC LTR MaLR 1 423 -5 721 190 39 0 chr9 28416724 28416903 -113854541 + L1MA8 LINE L1 6104 6289 -2 350 339 42 25 chr9 28416981 28417426 -113854018 + L1M4 LINE L1 3976 4433 -1713 1679 353 73 12 chr9 28417929 28418996 -113852448 - L2 LINE L2 0 3313 2174 998 244 79 16 chr9 28419506 28419821 -113851623 + LTR16A LTR ERVL 113 447 -3 1120 208 29 45 chr9 28420431 28420777 -113850667 + MER33 DNA MER1_type 1 319 -5 288 0 0 0 chr9 28421037 28421069 -113850375 + (TTTG)n Simple_repeat Simple_repeat 4 35 0 2597 246 17 31 chr9 28421365 28422012 -113849432 + L1PA15 LINE L1 11 648 -6933 2065 174 28 0 chr9 28422012 28422369 -113849075 + MER50 LTR ERV1 1 367 -367 1361 174 71 35 chr9 28422365 28422675 -113848769 + LTR9 LTR ERV1 292 612 0 * 17506 197 23 12 chr9 28422687 28428258 -113843186 + L1PA15 LINE L1 1968 7601 -2 374 200 80 40 chr9 28428776 28428901 -113842543 - MER102a DNA MER1_type -2 328 199 1543 143 95 76 chr9 28428932 28429289 -113842155 - L1MA9 LINE L1 -13 6299 5936 5555 57 4 0 chr9 28429571 28430270 -113841174 + L1PA7 LINE L1 5453 6154 0 212 100 25 0 chr9 28430934 28430974 -113840470 + (GA)n Simple_repeat Simple_repeat 2 42 0 182 315 0 0 chr9 28432267 28432321 -113839123 + MIR SINE MIR 44 97 -111 2110 119 17 0 chr9 28432522 28432816 -113838628 + AluSc SINE Alu 4 302 -7 397 200 0 0 chr9 28433009 28433079 -113838365 - L2 LINE L2 -50 3222 3153 244 342 63 32 chr9 28433587 28433745 -113837699 - L2 LINE L2 -11 3302 3140 277 221 0 0 chr9 28433750 28433818 -113837626 - MLT1L LTR MaLR -4 611 544 1077 265 73 9 chr9 28433968 28434296 -113837148 + L1MC4 LINE L1 6458 6806 -1236 856 249 6 4 chr9 28434296 28434513 -113836931 + L1MC4 LINE L1 7485 7788 -207 1853 135 54 96 chr9 28435515 28435856 -113835588 + MLT1B LTR MaLR 1 324 -66 2219 113 0 0 chr9 28435856 28436167 -113835277 - AluSx SINE Alu -1 311 1 1853 135 54 96 chr9 28436167 28436232 -113835212 + MLT1B LTR MaLR 324 390 0 28 0 0 0 chr9 28436414 28436442 -113835002 + AT_rich Low_complexity Low_complexity 1 28 0 289 353 49 22 chr9 28437447 28437631 -113833813 + L2 LINE L2 3122 3310 -3 1480 194 41 9 chr9 28438122 28438441 -113833003 + L1MB5 LINE L1 5536 5864 -310 4186 157 13 12 chr9 28438444 28439210 -113832234 - L1MA8 LINE L1 -4 6287 5521 893 223 5 28 chr9 28439210 28439425 -113832019 + L1MB5 LINE L1 5959 6168 -6 2665 136 22 11 chr9 28439754 28440202 -113831242 + L1MA10 LINE L1 5880 6332 -2 2138 94 0 85 chr9 28440211 28440540 -113830904 + AluSg SINE Alu 1 301 -9 6883 66 6 0 chr9 28440540 28441674 -113829770 + L1PA7 LINE L1 5014 6154 0 271 195 98 49 chr9 28442325 28442448 -113828996 - L1ME4a LINE L1 -2 6119 5991 245 359 18 100 chr9 28442676 28442896 -113828548 + L2 LINE L2 3009 3210 -62 2671 229 93 25 chr9 28443190 28443759 -113827685 + L1MEc LINE L1 44 680 -5716 2658 107 0 3 chr9 28443759 28444122 -113827322 + THE1B LTR MaLR 1 362 -2 2671 229 93 25 chr9 28444122 28444319 -113827125 + L1MEc LINE L1 680 862 -5534 24 53 0 0 chr9 28445316 28445354 -113826090 + GC_rich Low_complexity Low_complexity 1 38 0 240 185 0 0 chr9 28445952 28446006 -113825438 + (CA)n Simple_repeat Simple_repeat 1 54 0 2264 107 0 0 chr9 28446293 28446591 -113824853 + AluSx SINE Alu 1 298 -14 523 305 8 0 chr9 28446608 28446736 -113824708 + L2 LINE L2 3176 3304 -9 1059 283 66 42 chr9 28446811 28447264 -113824180 - MLT1J LTR MaLR -17 494 31 572 100 0 0 chr9 28447714 28447794 -113823650 - MADE1 DNA Mariner 0 80 1 1077 260 22 6 chr9 28449654 28449977 -113821467 + L1MA9 LINE L1 5937 6264 -48 3932 186 64 9 chr9 28449986 28450803 -113820641 - L1MB5 LINE L1 -31 6143 5282 225 333 13 13 chr9 28451058 28451133 -113820311 - L2 LINE L2 -3 3269 3195 1362 176 48 65 chr9 28451728 28452018 -113819426 + AluJo SINE Alu 5 289 -23 39 0 0 0 chr9 28452019 28452058 -113819386 + AT_rich Low_complexity Low_complexity 1 39 0 425 366 17 6 chr9 28452058 28452230 -113819214 + MIR SINE MIR 3 176 -86 9192 143 26 8 chr9 28452732 28454253 -113817191 - Ricksha DNA DNA -7 3239 1692 310 95 0 0 chr9 28454257 28454299 -113817145 - Ricksha DNA DNA -1764 282 241 570 189 9 0 chr9 28454318 28454424 -113817020 - Ricksha DNA DNA -1067 114 8 249 231 108 0 chr9 28454512 28454577 -113816867 + LTR50 LTR ERVL 212 283 -512 724 239 147 7 chr9 28454655 28454940 -113816504 + LTR50 LTR ERVL 471 795 0 647 269 64 5 chr9 28455145 28455364 -113816080 + L1MB8 LINE L1 5941 6172 -6 403 346 54 39 chr9 28455703 28455908 -113815536 - MIR SINE MIR -6 256 49 22 0 0 0 chr9 28457119 28457141 -113814303 + AT_rich Low_complexity Low_complexity 1 22 0 363 60 0 0 chr9 28457439 28457489 -113813955 + (CATA)n Simple_repeat Simple_repeat 2 51 0 272 253 0 13 chr9 28457644 28457719 -113813725 - LTR33A LTR ERVL -4 519 446 330 286 18 28 chr9 28458166 28458335 -113813109 - MLT1I LTR MaLR -263 175 12 2406 159 24 5 chr9 28458982 28459397 -113812047 - MSTB LTR MaLR -3 423 1 330 357 180 24 chr9 28459739 28460333 -113811111 + L2 LINE L2 1947 2633 -681 232 310 14 0 chr9 28460382 28460453 -113810991 + MLT1K LTR MaLR 9 80 -508 344 336 0 9 chr9 28461166 28461282 -113810162 - MIR3 SINE MIR -6 202 88 180 125 0 0 chr9 28461865 28461897 -113809547 + (CAA)n Simple_repeat Simple_repeat 3 34 0 728 217 127 0 chr9 28462207 28462364 -113809080 - AluJb SINE Alu -6 306 130 198 71 0 0 chr9 28462370 28462398 -113809046 + (TTG)n Simple_repeat Simple_repeat 2 29 0 305 324 18 65 chr9 28462417 28462587 -113808857 + L3 LINE CR1 1344 1505 -72 5659 152 35 17 chr9 28462587 28463975 -113807469 + L1MA5 LINE L1 4876 6296 -4 615 224 8 0 chr9 28465176 28465310 -113806134 - MER97c DNA MER1_type? -915 175 41 197 282 125 24 chr9 28465906 28466080 -113805364 - MIR SINE MIR -72 136 3 5099 170 38 27 chr9 28466713 28468713 -113802731 - L1MA9 LINE L1 -1 6375 4356 17643 30 0 0 chr9 28468714 28470841 -113800603 + L1P LINE L1 2134 4260 -1886 2935 148 8 24 chr9 28470849 28470930 -113800514 - L1MA9 LINE L1 -1870 4340 4259 2715 81 3 18 chr9 28470930 28471311 -113800133 - L1PA8A LINE L1 -1 6130 5756 2935 148 8 24 chr9 28471311 28471734 -113799710 - L1MA9 LINE L1 -1951 4259 3844 763 244 6 0 chr9 28471734 28471894 -113799550 - FRAM SINE Alu -5 161 1 2135 146 39 17 chr9 28471920 28472276 -113799168 - THE1B LTR MaLR 0 364 1 10441 109 43 8 chr9 28472276 28473699 -113797745 - THE1B-int LTR MaLR 0 1580 99 1784 146 55 55 chr9 28473699 28474063 -113797381 - THE1B LTR MaLR 0 364 1 10441 109 43 8 chr9 28474063 28474166 -113797278 - THE1B-int LTR MaLR -1481 99 1 2214 134 33 19 chr9 28474166 28474525 -113796919 - THE1B LTR MaLR 0 364 1 634 171 36 0 chr9 28474525 28474635 -113796809 - FLAM_C SINE Alu -18 115 1 4114 232 74 17 chr9 28474637 28475503 -113795941 - L1MA9 LINE L1 -2361 3849 2885 2051 148 0 0 chr9 28475503 28475794 -113795650 - AluSx SINE Alu -19 293 3 4114 232 74 17 chr9 28475794 28476209 -113795235 - L1MA9 LINE L1 -3325 2885 2495 5343 234 84 40 chr9 28476214 28476532 -113794912 - L1MA9 LINE L1 -4357 1854 1552 2239 89 0 49 chr9 28476532 28476857 -113794587 - AluSq SINE Alu -2 311 3 5343 234 84 40 chr9 28476857 28476868 -113794576 - L1MA9 LINE L1 -4659 1552 1543 1809 69 52 0 chr9 28476868 28477131 -113794313 - AluY SINE Alu 0 315 41 5343 234 84 40 chr9 28477131 28478603 -113792841 - L1MA9 LINE L1 -4668 1543 2 2524 75 0 0 chr9 28478870 28479178 -113792266 - AluY SINE Alu -3 308 1 279 340 32 45 chr9 28479456 28479612 -113791832 + L2 LINE L2 2897 3050 -222 261 0 0 0 chr9 28479791 28479820 -113791624 + (TGAA)n Simple_repeat Simple_repeat 3 31 0 436 274 72 67 chr9 28481679 28481887 -113789557 - MER20 DNA MER1_type -9 210 2 2525 114 8 16 chr9 28483145 28483514 -113787930 + THE1C LTR MaLR 1 366 -9 2003 256 80 16 chr9 28483586 28484137 -113787307 + MLT1G1 LTR MaLR 1 586 -9 180 97 0 0 chr9 28484257 28484288 -113787156 + (TAGA)n Simple_repeat Simple_repeat 4 34 0 2336 82 0 10 chr9 28484288 28484582 -113786862 - AluY SINE Alu -20 291 1 25 65 0 0 chr9 28484602 28484648 -113786796 + AT_rich Low_complexity Low_complexity 1 46 0 256 257 81 48 chr9 28484773 28484983 -113786461 + L1ME4a LINE L1 5879 6095 -26 1349 239 3 58 chr9 28486430 28486790 -113784654 + MLT2B1 LTR ERVL 1 340 -180 2405 84 0 0 chr9 28487146 28487444 -113784000 + AluY SINE Alu 1 298 -13 1532 273 50 39 chr9 28487807 28488342 -113783102 + MER68 LTR ERV1 10 550 -12 457 278 112 58 chr9 28488365 28488570 -113782874 + MER68-int LTR ERV1 18 233 -3958 * 947 298 36 28 chr9 28488414 28488776 -113782668 + HERVL68 LTR ERVL 28 392 -2645 * 3898 211 50 40 chr9 28488743 28489869 -113781575 + HERVL68 LTR ERVL 517 1653 -1384 797 175 41 6 chr9 28489874 28490045 -113781399 + HERVL68 LTR ERVL 2842 3018 -19 1192 211 52 4 chr9 28490050 28490301 -113781143 + MER68 LTR ERV1 6 268 -294 1367 248 26 28 chr9 28490312 28490753 -113780691 + MLT1C LTR MaLR 6 447 -20 1746 142 78 36 chr9 28490753 28490945 -113780499 + THE1C LTR MaLR 1 184 -191 231 36 0 0 chr9 28490945 28490973 -113780471 + (TC)n Simple_repeat Simple_repeat 1 28 0 1746 142 78 36 chr9 28490973 28491140 -113780304 + THE1C LTR MaLR 184 375 0 1367 248 26 28 chr9 28491140 28491161 -113780283 + MLT1C LTR MaLR 447 467 0 699 277 21 35 chr9 28491163 28491452 -113779992 + MER68 LTR ERV1 272 556 -6 364 315 89 65 chr9 28491783 28492156 -113779288 + L1MEd LINE L1 931 1273 -1234 23 54 0 0 chr9 28492466 28492503 -113778941 + AT_rich Low_complexity Low_complexity 1 37 0 25 31 0 0 chr9 28492786 28492818 -113778626 + AT_rich Low_complexity Low_complexity 1 32 0 783 172 0 0 chr9 28492913 28493035 -113778409 + FLAM_A SINE Alu 1 122 -11 311 300 88 6 chr9 28493200 28493360 -113778084 + L1MEd LINE L1 2341 2513 -3633 630 274 112 82 chr9 28493476 28494001 -113777443 + L1MEd LINE L1 2651 3191 -2955 1514 122 8 8 chr9 28494074 28494312 -113777132 - LTR62 LTR ERVK -2 717 480 2604 120 52 29 chr9 28494369 28494845 -113776599 - LTR62 LTR ERVK -232 487 1 311 278 78 41 chr9 28494856 28495201 -113776243 + L1MEd LINE L1 3397 3754 -2392 1206 185 141 7 chr9 28495204 28495501 -113775943 + MLT1C LTR MaLR 1 337 -130 1616 167 3 45 chr9 28495516 28495699 -113775745 + AluJb SINE Alu 2 168 -144 8307 54 4 4 chr9 28495699 28496706 -113774738 - LTR13 LTR ERVK 0 1007 1 1616 167 3 45 chr9 28496706 28496833 -113774611 + AluJb SINE Alu 168 299 -13 439 233 8 42 chr9 28496841 28496961 -113774483 + MLT1C LTR MaLR 352 467 0 673 242 141 58 chr9 28497268 28497595 -113773849 - MLT1H LTR MaLR 0 549 196 2065 120 10 20 chr9 28498577 28498876 -113772568 + AluSc SINE Alu 1 296 -13 751 244 49 0 chr9 28499645 28499850 -113771594 - L1ME3 LINE L1 -8 6154 5940 2586 236 121 19 chr9 28499853 28500772 -113770672 - L1MEc LINE L1 -5373 1023 11 553 197 33 0 chr9 28500750 28500872 -113770572 - L1ME3 LINE L1 -214 6017 5892 * 23 54 0 0 chr9 28500905 28500942 -113770502 + AT_rich Low_complexity Low_complexity 1 37 0 24 67 0 0 chr9 28501797 28501842 -113769602 + AT_rich Low_complexity Low_complexity 1 45 0 1582 130 9 0 chr9 28502184 28502407 -113769037 + AluSp SINE Alu 65 289 -24 421 136 0 0 chr9 28502544 28502610 -113768834 + Alu SINE Alu 222 287 -23 6792 50 27 1 chr9 28503681 28505398 -113766046 + L1PA7 LINE L1 4409 6154 0 185 197 0 115 chr9 28507190 28507251 -113764193 - MIR SINE MIR -100 162 109 213 121 0 0 chr9 28508158 28508191 -113763253 + (TC)n Simple_repeat Simple_repeat 1 33 0 2420 84 0 0 chr9 28509675 28509983 -113761461 + AluY SINE Alu 1 308 -3 334 344 167 7 chr9 28510724 28511012 -113760432 - L2 LINE L2 -342 2972 2639 30 59 0 0 chr9 28512449 28512500 -113758944 + AT_rich Low_complexity Low_complexity 1 51 0 190 325 0 52 chr9 28514245 28514322 -113757122 + MIR SINE MIR 179 251 -11 2656 42 0 0 chr9 28515801 28516131 -113755313 - AluY SINE Alu 0 330 1 207 0 0 0 chr9 28516228 28516251 -113755193 + (A)n Simple_repeat Simple_repeat 1 23 0 2295 129 8 30 chr9 28516434 28516806 -113754638 - THE1B LTR MaLR 0 364 1 263 348 84 22 chr9 28518825 28519003 -113752441 + L3 LINE CR1 1328 1516 -61 299 75 0 0 chr9 28519321 28519361 -113752083 + LTR23 LTR ERV1 320 359 -78 27 0 0 0 chr9 28519361 28519388 -113752056 + AT_rich Low_complexity Low_complexity 1 27 0 26 0 0 0 chr9 28521273 28521299 -113750145 + AT_rich Low_complexity Low_complexity 1 26 0 185 159 23 0 chr9 28522584 28522628 -113748816 + CT-rich Low_complexity Low_complexity 1 45 0 2542 44 3 0 chr9 28522780 28523078 -113748366 - AluY SINE Alu -12 299 1 316 266 195 8 chr9 28526011 28526139 -113745305 + MIR SINE MIR 44 195 -67 239 368 58 0 chr9 28526135 28526222 -113745222 - L2 LINE L2 -34 3238 3147 * 471 277 61 53 chr9 28527098 28527477 -113743967 + L1ME4a LINE L1 5582 5963 -158 307 188 29 14 chr9 28527485 28527554 -113743890 - L1MCa LINE L1 -4362 2064 1995 * 366 250 0 22 chr9 28527508 28527600 -113743844 + L1MC4 LINE L1 6614 6703 -1339 318 256 98 0 chr9 28527622 28527704 -113743740 + L1MC4 LINE L1 6614 6703 -1339 213 224 0 0 chr9 28527709 28527767 -113743677 + (TA)n Simple_repeat Simple_repeat 1 58 0 275 183 207 67 chr9 28527767 28527931 -113743513 + L1ME4a LINE L1 5935 6121 0 344 275 89 27 chr9 28530238 28530444 -113741000 + MIR SINE MIR 20 242 -20 215 326 79 22 chr9 28531571 28531660 -113739784 - L3 LINE CR1 -225 1352 1259 310 137 0 123 chr9 28532539 28532612 -113738832 - MADE1 DNA Mariner -2 78 15 1048 269 114 45 chr9 28533763 28533846 -113737598 + L2 LINE L2 1164 1240 -2074 1657 136 94 28 chr9 28533846 28534198 -113737246 - THE1C LTR MaLR 0 375 1 1048 269 114 45 chr9 28534198 28534511 -113736933 + L2 LINE L2 1240 1605 -1709 1487 212 31 22 chr9 28534511 28534869 -113736575 + MLT1A1 LTR MaLR 5 365 0 1048 269 114 45 chr9 28534869 28534980 -113736464 + L2 LINE L2 1605 1707 -1607 342 115 0 0 chr9 28535023 28535075 -113736369 + (TG)n Simple_repeat Simple_repeat 1 52 0 386 301 12 58 chr9 28535083 28535119 -113736325 - MIR3 SINE MIR -21 187 151 646 250 23 23 chr9 28535119 28535295 -113736149 - MER5B DNA MER1_type -1 177 2 386 301 12 58 chr9 28535295 28535431 -113736013 - MIR3 SINE MIR -57 151 23 555 264 50 33 chr9 28536197 28536379 -113735065 + MIR SINE MIR 8 192 -70 487 285 85 6 chr9 28536604 28536769 -113734675 + MIR SINE MIR 23 200 -62 392 273 87 61 chr9 28537439 28537784 -113733660 - LTR16A1 LTR ERVL 0 457 104 427 257 131 0 chr9 28538321 28538496 -113732948 + MER5C DNA MER1_type 127 324 0 552 241 32 80 chr9 28539585 28539834 -113731610 - MLT1K LTR MaLR -16 572 336 660 86 0 0 chr9 28540379 28540472 -113730972 - L1PA11 LINE L1 -8 6166 6074 605 274 125 5 chr9 28541957 28542158 -113729286 + MIR SINE MIR 28 236 -26 730 287 170 23 chr9 28542564 28543149 -113728295 + L2 LINE L2 2647 3308 -5 218 323 32 11 chr9 28543214 28543307 -113728137 - L3 LINE CR1 -214 1363 1269 203 88 29 0 chr9 28543332 28543366 -113728078 + (TGGG)n Simple_repeat Simple_repeat 2 36 0 369 136 0 0 chr9 28543369 28543435 -113728009 + (GGGA)n Simple_repeat Simple_repeat 3 68 0 287 219 237 0 chr9 28544447 28544561 -113726883 - MIR SINE MIR 0 262 122 355 289 64 40 chr9 28544583 28544756 -113726688 - MIR SINE MIR -66 196 20 212 215 41 93 chr9 28545481 28545591 -113725853 + MIR SINE MIR 43 147 -104 2136 141 0 0 chr9 28545635 28545933 -113725511 + AluSx SINE Alu 1 298 -14 8674 61 14 151 chr9 28545959 28547563 -113723881 + SVA Other Other 2 1385 -1 568 336 39 57 chr9 28547638 28547921 -113723523 + L2 LINE L2 2995 3272 0 21 104 0 0 chr9 28547940 28548017 -113723427 + AT_rich Low_complexity Low_complexity 1 77 0 1052 204 84 63 chr9 28548965 28549398 -113722046 - MER39 LTR ERV1 -85 622 1 1634 190 3 13 chr9 28549549 28549859 -113721585 - AluJb SINE Alu -5 307 1 250 279 252 0 chr9 28549862 28549973 -113721471 + MIR SINE MIR 116 254 -8 201 94 0 0 chr9 28549973 28550005 -113721439 + (TTA)n Simple_repeat Simple_repeat 2 33 0 638 312 111 4 chr9 28550149 28550383 -113721061 - L2 LINE L2 -205 3108 2850 880 225 26 35 chr9 28550726 28550957 -113720487 - MIR SINE MIR 0 262 34 238 240 20 0 chr9 28553088 28553138 -113718306 - L2 LINE L2 -1 3271 3221 21 0 0 0 chr9 28553593 28553614 -113717830 + AT_rich Low_complexity Low_complexity 1 21 0 885 248 31 5 chr9 28553665 28553887 -113717557 + MIR SINE MIR 21 248 -14 389 336 90 27 chr9 28553881 28554137 -113717307 + L3 LINE CR1 199 470 -1107 * 344 225 20 133 chr9 28554137 28554288 -113717156 + MER94 DNA DNA 1 134 0 828 302 33 52 chr9 28554368 28554732 -113716712 + L3 LINE CR1 588 944 -633 375 195 273 23 chr9 28554840 28554968 -113716476 + L3 LINE CR1 1407 1566 -11 289 297 22 0 chr9 28556777 28556868 -113714576 + MIR SINE MIR 57 149 -113 222 290 14 0 chr9 28557982 28558051 -113713393 + MIR SINE MIR 177 246 -16 212 360 90 0 chr9 28558100 28558200 -113713244 + L2 LINE L2 3159 3267 -5 279 29 0 0 chr9 28558346 28558380 -113713064 - U2 snRNA snRNA -154 34 1 210 71 0 0 chr9 28560194 28560222 -113711222 + (TTTTC)n Simple_repeat Simple_repeat 3 30 0 2170 96 0 0 chr9 28561677 28561993 -113709451 - AluSx SINE Alu 0 316 1 289 256 59 35 chr9 28562296 28562440 -113709004 + MIR SINE MIR 54 196 -12 27 0 0 0 chr9 28562908 28562935 -113708509 + AT_rich Low_complexity Low_complexity 1 27 0 1098 157 0 0 chr9 28563016 28563188 -113708256 - FRAM SINE Alu -10 166 1 198 216 247 52 chr9 28563299 28563328 -113708116 - L2 LINE L2 -4 3268 3246 1977 188 121 13 chr9 28563328 28563790 -113707654 - MER67D LTR ERV1 0 514 3 198 216 247 52 chr9 28563790 28563857 -113707587 - L2 LINE L2 -26 3246 3153 21 0 0 0 chr9 28565112 28565133 -113706311 + AT_rich Low_complexity Low_complexity 1 21 0 182 250 14 0 chr9 28566126 28566198 -113705246 + (TA)n Simple_repeat Simple_repeat 1 73 0 708 282 52 28 chr9 28567650 28567902 -113703542 - MIR SINE MIR -1 261 2 277 410 56 0 chr9 28568531 28568726 -113702718 + L3b LINE CR1 1104 1309 -274 356 351 53 55 chr9 28568772 28569188 -113702256 - L2 LINE L2 -54 3218 2804 425 258 10 21 chr9 28570767 28570864 -113700580 - L2 LINE L2 -1 3271 3176 739 250 48 6 chr9 28570892 28571060 -113700384 + MER5B DNA MER1_type 1 175 -3 960 200 9 0 chr9 28573102 28573317 -113698127 + L1MA6 LINE L1 6084 6300 0 21 0 0 0 chr9 28573616 28573637 -113697807 + AT_rich Low_complexity Low_complexity 1 21 0 631 299 6 0 chr9 28574202 28574379 -113697065 + LTR33 LTR ERVL 1 178 -343 22 0 0 0 chr9 28574935 28574957 -113696487 + AT_rich Low_complexity Low_complexity 1 22 0 2276 106 6 3 chr9 28575996 28576307 -113695137 + AluSx SINE Alu 1 312 0 11825 195 47 18 chr9 28578720 28583730 -113687714 + L1PA16 LINE L1 1761 6858 -11 1701 181 74 47 chr9 28584088 28584575 -113686869 + MLT1D LTR MaLR 6 505 0 1281 272 88 24 chr9 28584929 28585507 -113685937 + MLT1L LTR MaLR 1 615 0 720 254 144 27 chr9 28587295 28587784 -113683660 - MLT1H LTR MaLR -15 540 1 208 338 26 84 chr9 28588349 28588503 -113682941 + MIR SINE MIR 48 192 -70 2437 72 26 0 chr9 28589101 28589406 -113682038 + AluSp SINE Alu 1 313 0 29 70 0 0 chr9 28589432 28589489 -113681955 + AT_rich Low_complexity Low_complexity 1 57 0 1427 233 34 34 chr9 28590131 28590517 -113680927 - MLT1B LTR MaLR -4 386 1 253 409 35 16 chr9 28590605 28590862 -113680582 - L2 LINE L2 -446 2868 2607 197 342 6 95 chr9 28590912 28591070 -113680374 - MIR SINE MIR -99 163 20 199 256 0 0 chr9 28591328 28591371 -113680073 + MIR SINE MIR 109 151 -111 304 352 0 16 chr9 28592344 28592526 -113678918 + (CCA)n Simple_repeat Simple_repeat 1 179 0 271 237 62 62 chr9 28593446 28593543 -113677901 + LTR33 LTR ERVL 1 97 -424 437 260 79 45 chr9 28594888 28595065 -113676379 + MER5A DNA MER1_type 6 188 -1 240 271 195 27 chr9 28595259 28595416 -113676028 - MIR SINE MIR -64 198 23 328 151 35 35 chr9 28595804 28595890 -113675554 - L1MC5 LINE L1 -47 7914 7829 534 277 83 37 chr9 28596708 28596950 -113674494 - MIR SINE MIR -5 257 5 388 320 107 15 chr9 28596959 28597156 -113674288 + L1MC4a LINE L1 5695 5909 -1899 21 36 0 0 chr9 28597231 28597259 -113674185 + AT_rich Low_complexity Low_complexity 1 28 0 287 304 146 92 chr9 28597405 28597482 -113673962 + L2 LINE L2 3020 3091 -181 7712 58 2 60 chr9 28597482 28598511 -113672933 - LTR5 LTR ERVK 0 969 1 287 304 146 92 chr9 28598511 28598673 -113672771 + L2 LINE L2 3091 3272 0 566 316 101 3 chr9 28598813 28599054 -113672390 + MIR SINE MIR 2 261 -1 192 77 0 0 chr9 28599369 28599395 -113672049 + (A)n Simple_repeat Simple_repeat 1 26 0 22 35 0 0 chr9 28599511 28599540 -113671904 + AT_rich Low_complexity Low_complexity 1 29 0 1523 134 24 0 chr9 28599590 28599837 -113671607 - L1PA16 LINE L1 0 6166 5914 356 314 127 18 chr9 28599839 28600281 -113671163 + L1ME4a LINE L1 5618 6121 0 23 33 0 0 chr9 28600281 28600311 -113671133 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr9 28600867 28600888 -113670556 + AT_rich Low_complexity Low_complexity 1 21 0 225 0 0 0 chr9 28600913 28600938 -113670506 + (TAAAAA)n Simple_repeat Simple_repeat 2 26 0 1696 183 52 48 chr9 28601204 28601664 -113669780 + MLT1C LTR MaLR 6 467 0 257 171 0 66 chr9 28601670 28601746 -113669698 + L1MC5 LINE L1 7754 7824 -137 284 230 50 29 chr9 28601937 28602076 -113669368 + HAL1b LINE L1 1204 1345 -3 2316 77 0 3 chr9 28602108 28602394 -113669050 + AluY SINE Alu 1 285 -26 337 279 54 36 chr9 28603243 28603286 -113668158 - L2 LINE L2 -2 3270 3229 2277 93 0 10 chr9 28603286 28603586 -113667858 + AluSc SINE Alu 10 306 -3 337 279 54 36 chr9 28603586 28603653 -113667791 - L2 LINE L2 -43 3229 3158 435 249 233 0 chr9 28603934 28604127 -113667317 - MIR SINE MIR -12 250 13 1001 199 197 9 chr9 28605897 28606413 -113665031 + LTR50 LTR ERVL 1 694 -101 571 217 178 11 chr9 28606516 28606696 -113664748 + MIR SINE MIR 47 256 -6 22 0 0 0 chr9 28607677 28607699 -113663745 + AT_rich Low_complexity Low_complexity 1 22 0 310 279 57 33 chr9 28608145 28608267 -113663177 - MIR SINE MIR -65 143 19 529 306 71 6 chr9 28608902 28609085 -113662359 - MIR SINE MIR -61 201 7 540 304 28 11 chr9 28609879 28610060 -113661384 - MIR SINE MIR -6 256 73 391 308 43 47 chr9 28610684 28610895 -113660549 - MLT1J2 LTR MaLR 0 450 241 249 143 54 36 chr9 28610959 28611015 -113660429 + MIR SINE MIR 148 204 -58 338 308 0 0 chr9 28611047 28611151 -113660293 - MIR SINE MIR -74 188 85 1334 250 40 42 chr9 28611157 28611448 -113659996 - MLT1D LTR MaLR -6 499 208 354 23 0 0 chr9 28611448 28611491 -113659953 + (TG)n Simple_repeat Simple_repeat 2 44 0 1334 250 40 42 chr9 28611491 28611695 -113659749 - MLT1D LTR MaLR -297 208 5 240 322 11 0 chr9 28611700 28611787 -113659657 - MIR SINE MIR -174 88 1 29285 111 18 59 chr9 28611947 28618356 -113653088 - L1PA7 LINE L1 -8 6146 16 13731 210 9 36 chr9 28618576 28619763 -113651681 + L1PA15 LINE L1 1679 2896 -3269 1770 160 4 7 chr9 28619763 28620062 -113651382 + AluJb SINE Alu 9 306 0 13731 210 9 36 chr9 28620062 28623000 -113648444 + L1PA15 LINE L1 2896 5689 -476 957 173 30 89 chr9 28623001 28623238 -113648206 + AluJb SINE Alu 81 303 -9 2846 160 6 8 chr9 28623238 28623725 -113647719 + L1PA15 LINE L1 5677 6162 -3 258 303 0 13 chr9 28624213 28624289 -113647155 + Zaphod DNA AcHobo 3954 4028 -3 282 338 86 0 chr9 28624838 28624977 -113646467 + MIR SINE MIR 106 256 -6 201 361 124 0 chr9 28627169 28627266 -113644178 + MIR SINE MIR 34 142 -66 1349 155 49 13 chr9 28627282 28627723 -113643721 - LTR54 LTR ERV1 -21 477 2 608 267 120 22 chr9 28627758 28627983 -113643461 - MIR SINE MIR -14 248 2 241 256 110 12 chr9 28628623 28628705 -113642739 - MIR SINE MIR -102 106 17 469 247 114 11 chr9 28628923 28629149 -113642295 - MIR SINE MIR -5 257 5 1637 127 43 56 chr9 28629318 28629431 -113642013 + MER44D DNA MER2_type 18 131 -2360 2124 124 0 17 chr9 28629431 28629729 -113641715 - AluSx SINE Alu -19 293 1 1637 127 43 56 chr9 28629729 28629939 -113641505 + MER44D DNA MER2_type 131 607 -2 2597 115 5 0 chr9 28630353 28630726 -113640718 + THE1C LTR MaLR 1 375 0 1908 217 82 27 chr9 28630842 28631367 -113640077 + MLT2B3 LTR ERVL 1 554 0 210 381 67 9 chr9 28631451 28631556 -113639888 - L2 LINE L2 -11 3302 3192 2615 162 12 14 chr9 28632431 28632918 -113638526 - L1MB2 LINE L1 -1 6170 5685 377 307 108 22 chr9 28633086 28633317 -113638127 - MIR SINE MIR 0 262 12 232 369 90 0 chr9 28633590 28633701 -113637743 + MIR3 SINE MIR 36 156 -52 204 322 0 0 chr9 28633756 28633815 -113637629 + MIR SINE MIR 85 143 -119 265 264 138 23 chr9 28634012 28634099 -113637345 - MER5A DNA MER1_type -2 187 91 2922 155 43 6 chr9 28634220 28634750 -113636694 + L1MB3 LINE L1 5625 6174 -9 2207 96 81 26 chr9 28635047 28635392 -113636052 + THE1B LTR MaLR 1 364 0 21 36 0 0 chr9 28635731 28635759 -113635685 + AT_rich Low_complexity Low_complexity 1 28 0 2016 152 39 51 chr9 28636014 28636346 -113635098 - MSTB1 LTR MaLR -4 428 101 2240 143 125 0 chr9 28636346 28636746 -113634698 + LTR47A LTR ERVL 1 450 -2 2016 152 39 51 chr9 28636746 28636846 -113634598 - MSTB1 LTR MaLR -331 101 1 688 233 84 5 chr9 28637872 28637918 -113633526 + MER58A DNA MER1_type 6 47 -2373 257 0 30 0 chr9 28637918 28637951 -113633493 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 688 233 84 5 chr9 28637951 28638106 -113633338 + MER58A DNA MER1_type 47 223 -1 933 208 52 119 chr9 28638364 28638749 -113632695 - MLT1A1 LTR MaLR -2 363 5 1220 254 92 30 chr9 28638829 28639000 -113632444 - LTR16B LTR ERVL 0 464 305 1695 184 43 0 chr9 28639000 28639162 -113632282 - AluJb SINE Alu -18 294 113 207 0 0 0 chr9 28639162 28639185 -113632259 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1695 184 43 0 chr9 28639185 28639304 -113632140 - AluJb SINE Alu -199 113 1 1220 254 92 30 chr9 28639304 28639569 -113631875 - LTR16B LTR ERVL -159 305 1 216 263 35 0 chr9 28639686 28639743 -113631701 - MIR3 SINE MIR -25 183 125 220 340 206 25 chr9 28640474 28640833 -113630611 - L2 LINE L2 -965 2349 1926 213 180 0 0 chr9 28641951 28642001 -113629443 + CT-rich Low_complexity Low_complexity 1 50 0 1520 207 98 15 chr9 28642999 28643409 -113628035 + MLT1D LTR MaLR 62 505 0 338 296 59 62 chr9 28643651 28643852 -113627592 - MIR SINE MIR -36 226 30 384 155 0 0 chr9 28644320 28644391 -113627053 + GA-rich Low_complexity Low_complexity 1 71 0 205 191 24 0 chr9 28645223 28645265 -113626179 + (ATG)n Simple_repeat Simple_repeat 2 44 0 697 255 6 12 chr9 28645315 28645476 -113625968 - MIR SINE MIR -73 189 30 187 193 313 12 chr9 28645517 28645600 -113625844 - MIR SINE MIR -76 186 79 215 344 0 0 chr9 28645853 28645917 -113625527 + L2 LINE L2 3136 3199 -73 2569 128 7 17 chr9 28645917 28646339 -113625105 + MSTA LTR MaLR 11 428 0 260 328 15 0 chr9 28646339 28646406 -113625038 + L2 LINE L2 3237 3304 -9 256 288 29 22 chr9 28647037 28647176 -113624268 + L1ME4a LINE L1 5308 5447 -2361 442 91 0 15 chr9 28647193 28647259 -113624185 + AluSc SINE Alu 233 297 -12 1084 219 48 4 chr9 28647260 28647529 -113623915 - L1ME1 LINE L1 -5 6161 5881 736 238 115 43 chr9 28647533 28647975 -113623469 + L1ME4a LINE L1 5446 5919 -202 228 206 0 0 chr9 28648045 28648108 -113623336 + L1ME4a LINE L1 6056 6118 -3 1581 152 80 4 chr9 28648135 28648411 -113623033 - AluJo SINE Alu -15 297 1 186 287 156 16 chr9 28648511 28648633 -113622811 - L2 LINE L2 -19 3294 3156 286 263 203 8 chr9 28648675 28648808 -113622636 + MIR SINE MIR 98 256 -6 183 94 62 0 chr9 28650148 28650180 -113621264 - L3 LINE CR1 -155 1422 1389 2156 106 0 52 chr9 28651029 28651358 -113620086 - AluSx SINE Alu 0 312 1 574 328 65 34 chr9 28652209 28652621 -113618823 - MLT1K LTR MaLR -25 563 139 240 240 20 0 chr9 28652596 28652646 -113618798 - MLT1K LTR MaLR -355 233 183 * 7546 106 26 18 chr9 28652699 28652789 -113618655 - HSMAR2 DNA Mariner -94 1208 1120 2211 135 0 19 chr9 28652789 28653107 -113618337 - AluSx SINE Alu 0 312 1 7546 106 26 18 chr9 28653107 28654214 -113617230 - HSMAR2 DNA Mariner -182 1120 1 1486 163 25 4 chr9 28654462 28654738 -113616706 + L1MB3 LINE L1 5892 6173 -10 474 309 108 10 chr9 28655965 28656169 -113615275 - MIR SINE MIR -7 255 32 299 231 253 0 chr9 28656505 28656596 -113614848 + MIR SINE MIR 44 157 -105 565 220 51 19 chr9 28656610 28656824 -113614620 - L1ME LINE L1 -680 5482 5262 2055 139 3 3 chr9 28656825 28657134 -113614310 + AluSg SINE Alu 1 309 -1 2624 216 6 40 chr9 28657148 28657848 -113613596 + L1ME1 LINE L1 5486 6161 -5 1604 190 28 21 chr9 28658033 28658322 -113613122 + AluJo SINE Alu 1 291 -21 270 169 34 17 chr9 28658421 28658480 -113612964 + LTR67 LTR ERVL 478 537 -20 396 307 109 50 chr9 28658612 28658796 -113612648 - MIR SINE MIR -5 257 54 1973 102 84 3 chr9 28658796 28659080 -113612364 + AluSg SINE Alu 1 307 -3 396 307 109 50 chr9 28659080 28659133 -113612311 - MIR SINE MIR -208 54 6 7402 37 0 3 chr9 28660052 28661364 -113610080 + L1PA5 LINE L1 4840 6148 -6 2391 180 11 17 chr9 28661413 28661875 -113609569 + MER44D DNA MER2_type 7 520 -85 6342 88 11 1 chr9 28661882 28663184 -113608260 + L1PA14 LINE L1 4833 6159 -2 2106 107 0 7 chr9 28663507 28663849 -113607595 - AluSc SINE Alu 0 340 1 393 298 153 37 chr9 28664072 28664424 -113607020 - L2 LINE L2 0 3313 2921 297 75 0 0 chr9 28665863 28665903 -113605541 + (CA)n Simple_repeat Simple_repeat 2 41 0 226 328 107 16 chr9 28666252 28666374 -113605070 + MIR3 SINE MIR 67 199 -9 2208 112 0 3 chr9 28666523 28666817 -113604627 - AluSg SINE Alu -17 293 1 2316 118 82 43 chr9 28668866 28669282 -113602162 + MSTB1 LTR MaLR 1 432 0 412 258 41 53 chr9 28669284 28669528 -113601916 + L1MC5 LINE L1 7336 7576 -385 232 300 82 29 chr9 28669617 28669860 -113601584 + L1MC5 LINE L1 7701 7956 -5 2378 104 0 9 chr9 28669966 28670282 -113601162 + AluSq SINE Alu 1 313 0 199 277 0 0 chr9 28670818 28670865 -113600579 + MIR SINE MIR 216 262 0 371 285 70 65 chr9 28671306 28671506 -113599938 - MIR3 SINE MIR -5 203 3 217 191 21 21 chr9 28671697 28671744 -113599700 - L2 LINE L2 -3 3310 3264 1921 161 43 0 chr9 28671854 28672153 -113599291 + AluJb SINE Alu 1 312 0 224 109 0 43 chr9 28673208 28673254 -113598190 + (TTTC)n Simple_repeat Simple_repeat 1 44 0 2248 84 7 23 chr9 28673460 28673768 -113597676 - AluSp SINE Alu -6 307 5 319 320 112 34 chr9 28674604 28674810 -113596634 - L1 LINE L1 -2238 3908 3687 2120 231 49 38 chr9 28675569 28675994 -113595450 + L1ME3 LINE L1 5455 5893 -269 5935 103 15 5 chr9 28675994 28676820 -113594624 + L1PA14 LINE L1 4339 5155 -1006 2105 104 34 10 chr9 28676820 28677117 -113594327 + AluSx SINE Alu 1 304 -8 5935 103 15 5 chr9 28677117 28678098 -113593346 + L1PA14 LINE L1 5155 6149 -12 2120 231 49 38 chr9 28678098 28678366 -113593078 + L1ME3 LINE L1 5893 6156 -6 2757 132 27 8 chr9 28678661 28679146 -113592298 - L1MA5 LINE L1 0 6300 5807 2165 80 31 0 chr9 28679348 28679634 -113591810 - AluY SINE Alu -5 306 12 185 284 75 0 chr9 28679637 28679704 -113591740 - MIR SINE MIR -114 148 77 234 0 0 0 chr9 28679863 28679889 -113591555 + (T)n Simple_repeat Simple_repeat 1 26 0 877 104 30 0 chr9 28681282 28681417 -113590027 - L1PA13 LINE L1 -5 6158 6020 1103 211 35 107 chr9 28681497 28681665 -113589779 + MLT1B LTR MaLR 6 185 -205 2313 99 7 0 chr9 28681665 28681958 -113589486 + AluSc SINE Alu 1 295 -14 1103 211 35 107 chr9 28681958 28682192 -113589252 + MLT1B LTR MaLR 185 379 -11 1168 153 0 0 chr9 28684520 28684697 -113586747 - AluSg/x SINE Alu -3 309 133 21 0 0 0 chr9 28684926 28684947 -113586497 + AT_rich Low_complexity Low_complexity 1 21 0 2116 219 59 49 chr9 28685022 28685683 -113585761 + L1ME2 LINE L1 5009 5701 -463 2157 96 11 4 chr9 28685683 28685991 -113585453 + AluSx SINE Alu 1 310 0 2116 219 59 49 chr9 28685991 28686395 -113585049 + L1ME2 LINE L1 5701 6100 -64 1771 177 7 3 chr9 28686399 28686699 -113584745 + AluJo SINE Alu 4 304 -8 225 235 45 45 chr9 28686779 28686911 -113584533 + L1MC4 LINE L1 7836 7967 -75 26 0 0 0 chr9 28686983 28687009 -113584435 + AT_rich Low_complexity Low_complexity 1 26 0 249 257 62 88 chr9 28687153 28687266 -113584178 + L2 LINE L2 3158 3267 -5 1353 161 107 76 chr9 28687288 28687579 -113583865 - AluJo SINE Alu -12 300 1 43 20 0 0 chr9 28687822 28687872 -113583572 + AT_rich Low_complexity Low_complexity 1 50 0 261 288 38 25 chr9 28687888 28687968 -113583476 - MER5B DNA MER1_type -8 170 90 223 347 0 27 chr9 28687902 28687977 -113583467 + MER5A DNA MER1_type 35 107 -82 * 399 266 227 30 chr9 28688550 28688753 -113582691 + MIR SINE MIR 20 262 0 2418 51 51 0 chr9 28688809 28689105 -113582339 + AluY SINE Alu 1 311 0 2051 155 79 25 chr9 28689737 28690143 -113581301 - MSTA LTR MaLR 0 428 1 25 31 0 0 chr9 28691207 28691239 -113580205 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr9 28691404 28691425 -113580019 + AT_rich Low_complexity Low_complexity 1 21 0 1422 279 116 26 chr9 28692017 28692561 -113578883 + MLT1E LTR MaLR 1 593 0 316 236 150 14 chr9 28693083 28693223 -113578221 - L1ME3A LINE L1 -3 6167 6009 1475 271 81 2 chr9 28693229 28693697 -113577747 - L1ME3A LINE L1 -278 5892 5388 207 103 0 26 chr9 28693783 28693822 -113577622 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 284 305 59 17 chr9 28693831 28693949 -113577495 + L1ME3A LINE L1 6026 6148 -22 4276 143 32 16 chr9 28693962 28695220 -113576224 + L1PA16 LINE L1 4698 5963 -203 2152 111 44 0 chr9 28695233 28695531 -113575913 + AluSx SINE Alu 2 312 0 1390 274 44 85 chr9 28695532 28696402 -113575042 + L1ME LINE L1 2 835 -5235 1701 197 0 7 chr9 28696412 28696696 -113574748 + AluJo SINE Alu 1 282 -30 326 128 60 0 chr9 28696735 28696852 -113574592 + (TA)n Simple_repeat Simple_repeat 1 124 0 601 257 60 32 chr9 28696889 28697138 -113574306 + L1ME LINE L1 837 1092 -4988 656 221 41 0 chr9 28697176 28697348 -113574096 + L1ME LINE L1 1198 1376 -4704 1570 223 75 44 chr9 28697371 28697789 -113573655 + L1MEc LINE L1 1007 1449 -5376 2349 91 0 0 chr9 28697789 28698085 -113573359 + AluSq SINE Alu 1 296 -17 1570 223 75 44 chr9 28698085 28698236 -113573208 + L1MEc LINE L1 1449 1594 -5231 225 161 48 24 chr9 28698270 28698394 -113573050 + (TA)n Simple_repeat Simple_repeat 1 127 0 377 232 77 23 chr9 28698425 28698574 -113572870 + L1MEc LINE L1 1517 1766 -4878 3039 181 76 5 chr9 28698708 28699365 -113572079 + L1MB7 LINE L1 5472 6175 -9 299 209 57 38 chr9 28699472 28699577 -113571867 + L1MEc LINE L1 2646 2752 -3892 1515 147 162 0 chr9 28699577 28699891 -113571553 - MER47A DNA MER2_type 0 366 2 225 222 42 0 chr9 28699891 28699963 -113571481 + L1MEc LINE L1 2748 2822 -3822 1286 221 38 0 chr9 28700012 28700275 -113571169 + AluSx SINE Alu 1 273 -39 184 29 29 29 chr9 28700284 28700318 -113571126 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 1775 143 4 4 chr9 28700318 28700591 -113570853 + AluSq SINE Alu 1 273 -40 615 231 54 0 chr9 28700591 28700738 -113570706 + MLT1E1 LTR MaLR 491 645 -9 1183 179 23 88 chr9 28700747 28700872 -113570572 + L1MEc LINE L1 3055 3187 -3457 2454 70 0 0 chr9 28700872 28701172 -113570272 - AluY SINE Alu -11 300 1 1183 179 23 88 chr9 28701172 28701388 -113570056 + L1MEc LINE L1 3187 3372 -3272 2338 71 0 0 chr9 28701388 28701832 -113569612 + AluY SINE Alu 1 444 0 1183 179 23 88 chr9 28701832 28701874 -113569570 + L1MEc LINE L1 3372 3415 -3229 2089 132 0 0 chr9 28702168 28702463 -113568981 - AluSx SINE Alu -17 295 1 2553 52 0 3 chr9 28702842 28703147 -113568297 - AluY SINE Alu -7 304 1 1011 152 0 0 chr9 28704130 28704281 -113567163 - AluJb SINE Alu -15 297 147 2208 121 0 3 chr9 28704717 28705031 -113566413 + AluSp SINE Alu 1 313 0 1869 72 0 4 chr9 28705319 28705554 -113565890 - AluY SINE Alu -77 234 1 1450 161 84 18 chr9 28705615 28705831 -113565613 + AluJo SINE Alu 3 242 -70 2226 201 116 72 chr9 28705831 28706622 -113564822 - LTR1B LTR ERV1 0 826 1 1450 161 84 18 chr9 28706622 28706679 -113564765 + AluJo SINE Alu 242 294 -18 21 36 0 0 chr9 28706872 28706900 -113564544 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr9 28707104 28707126 -113564318 + AT_rich Low_complexity Low_complexity 1 22 0 1939 123 9 56 chr9 28707409 28707468 -113563976 - MER47A DNA MER2_type -1984 339 279 2402 78 0 19 chr9 28707468 28707777 -113563667 - AluSq SINE Alu -10 303 1 1939 123 9 56 chr9 28707777 28708059 -113563385 - MER47A DNA MER2_type -2044 279 14 26 0 0 0 chr9 28708094 28708120 -113563324 + AT_rich Low_complexity Low_complexity 1 26 0 20445 83 1 6 chr9 28708348 28711089 -113560355 + HERV9 LTR ERV1 2217 4944 -3455 2282 175 117 67 chr9 28711090 28711929 -113559515 + HERV9 LTR ERV1 840 1720 -5176 * 3388 85 3 23 chr9 28711923 28712508 -113558936 + HERV9 LTR ERV1 7756 8399 0 5488 77 98 1 chr9 28712508 28713261 -113558183 + LTR12 LTR ERV1 1 826 0 369 349 64 43 chr9 28713740 28714067 -113557377 + HAL1b LINE L1 18 351 -997 315 288 107 23 chr9 28714267 28714444 -113557000 + HAL1 LINE L1 6 197 -2310 2516 179 95 81 chr9 28714485 28715166 -113556278 - LTR8 LTR ERV1 0 691 1 293 253 20 20 chr9 28715310 28715409 -113556035 + HAL1 LINE L1 468 566 -1941 485 222 105 77 chr9 28715451 28715536 -113555908 + HAL1 LINE L1 760 841 -1666 1761 167 3 16 chr9 28715536 28715848 -113555596 + AluJb SINE Alu 1 308 -4 485 222 105 77 chr9 28715848 28716010 -113555434 + HAL1 LINE L1 841 1014 -1493 1318 238 38 108 chr9 28716013 28716615 -113554829 - REP3 LTR ERV -2 560 1 509 230 97 50 chr9 28716630 28716930 -113554514 + HAL1 LINE L1 1026 1339 -1168 377 260 65 8 chr9 28717039 28717162 -113554282 + HAL1 LINE L1 1363 1492 -1015 * 1109 15 0 0 chr9 28717157 28717287 -113554157 + L1P LINE L1 2791 2920 -3226 3791 60 12 6 chr9 28717388 28717900 -113553544 + L1PA5 LINE L1 4814 5329 -812 3572 39 0 2 chr9 28717900 28718334 -113553110 + L1PA5 LINE L1 5721 6154 0 1350 233 142 87 chr9 28718335 28719175 -113552269 + HAL1 LINE L1 1485 2370 -137 242 292 292 14 chr9 28719436 28719580 -113551864 - MIR3 SINE MIR -6 202 19 786 156 0 15 chr9 28720256 28720391 -113551053 + FLAM_A SINE Alu 1 133 0 2195 75 14 14 chr9 28720622 28720916 -113550528 - AluY SINE Alu -17 294 1 823 10 0 20 chr9 28724049 28724149 -113547295 - L1PA3 LINE L1 -2 6153 6056 2328 98 3 0 chr9 28724798 28725095 -113546349 + AluSp SINE Alu 1 298 -15 21 36 0 0 chr9 28725204 28725232 -113546212 + AT_rich Low_complexity Low_complexity 1 28 0 396 201 58 71 chr9 28725319 28725473 -113545971 - L1MC5 LINE L1 -608 7353 7202 237 244 70 0 chr9 28725523 28725609 -113545835 - HAL1 LINE L1 -1028 1479 1388 665 215 226 26 chr9 28725725 28725990 -113545454 + L2 LINE L2 2988 3305 -8 579 301 90 47 chr9 28725992 28726131 -113545313 - HAL1 LINE L1 -1276 1231 1100 2100 98 0 0 chr9 28726131 28726396 -113545048 - AluSg SINE Alu -45 265 1 579 301 90 47 chr9 28726396 28726621 -113544823 - HAL1 LINE L1 -1407 1100 851 2383 91 0 0 chr9 28726859 28727168 -113544276 + AluSg1 SINE Alu 1 309 0 2391 90 3 0 chr9 28727408 28727709 -113543735 - AluSp SINE Alu -11 302 1 21 71 0 0 chr9 28727753 28727795 -113543649 + AT_rich Low_complexity Low_complexity 1 42 0 2704 39 0 0 chr9 28727925 28728236 -113543208 - AluY SINE Alu 0 311 1 280 233 8 54 chr9 28728241 28728370 -113543074 - L1MC/D LINE L1 -2556 5439 5317 329 267 0 0 chr9 28728605 28728680 -113542764 - HAL1 LINE L1 -2422 85 11 2219 88 3 10 chr9 28728955 28729252 -113542192 + AluY SINE Alu 1 295 -16 2327 75 7 0 chr9 28730564 28730858 -113540586 - AluY SINE Alu -15 296 1 35 41 0 0 chr9 28732743 28732792 -113538652 + AT_rich Low_complexity Low_complexity 1 49 0 515 220 0 8 chr9 28732792 28732910 -113538534 - AluJb SINE Alu -22 290 174 2145 103 3 3 chr9 28733049 28733340 -113538104 + AluSx SINE Alu 14 304 -8 249 328 138 9 chr9 28733572 28733688 -113537756 + L3 LINE CR1 199 329 -1248 624 229 170 31 chr9 28733700 28734058 -113537386 - L2 LINE L2 -280 3033 2632 457 225 183 100 chr9 28734062 28734513 -113536931 - L2 LINE L2 -831 2483 1920 422 311 139 0 chr9 28734516 28734696 -113536748 - L2 LINE L2 -1648 1666 1462 416 297 34 14 chr9 28734822 28734970 -113536474 + L3 LINE CR1 1250 1400 -177 1057 222 29 25 chr9 28735039 28735282 -113536162 - MIR SINE MIR -18 244 1 4187 153 101 7 chr9 28735466 28736376 -113535068 + L1MC2 LINE L1 5188 6181 -163 532 93 23 12 chr9 28736390 28736476 -113534968 + L1MC2 LINE L1 6248 6334 -10 428 215 16 58 chr9 28736864 28736985 -113534459 - AluJb SINE Alu -68 244 129 479 322 159 21 chr9 28737395 28737684 -113533760 - L3 LINE CR1 -7 1570 1242 2020 142 30 0 chr9 28738233 28738536 -113532908 + AluSx SINE Alu 1 312 0 2455 78 0 3 chr9 28739424 28739732 -113531712 + AluY SINE Alu 1 307 -4 1188 102 12 0 chr9 28739732 28739899 -113531545 + AluY SINE Alu 133 301 -10 23 0 0 0 chr9 28740526 28740549 -113530895 + AT_rich Low_complexity Low_complexity 1 23 0 2240 75 4 0 chr9 28741393 28741694 -113529750 + AluY SINE Alu 1 302 0 1016 268 93 34 chr9 28743325 28743949 -113527495 + L1MC4 LINE L1 7377 8037 -5 198 0 0 0 chr9 28744654 28744676 -113526768 + (A)n Simple_repeat Simple_repeat 1 22 0 1318 189 125 11 chr9 28744681 28744945 -113526499 - AluJb SINE Alu -18 294 1 2225 98 7 3 chr9 28745815 28746111 -113525333 + AluSp SINE Alu 1 297 -16 531 194 86 29 chr9 28746245 28746384 -113525060 - MIR SINE MIR -10 252 106 2208 127 0 0 chr9 28746414 28746713 -113524731 - AluSx SINE Alu -7 305 7 270 191 88 0 chr9 28746888 28746956 -113524488 + L1MC4a LINE L1 5885 5958 -1850 963 230 101 83 chr9 28747305 28747471 -113523973 - MLT1D LTR MaLR 0 505 343 1943 153 52 18 chr9 28747471 28747797 -113523647 + MER1B DNA MER1_type 1 337 0 963 230 101 83 chr9 28747797 28748126 -113523318 - MLT1D LTR MaLR -162 343 1 922 189 111 45 chr9 28748175 28748508 -113522936 + Charlie4a DNA MER1_type 148 502 -6 2281 187 47 18 chr9 28748708 28749199 -113522245 + MLT1D LTR MaLR 1 505 0 386 238 54 82 chr9 28749220 28749573 -113521871 + L1MC5 LINE L1 7339 7681 -280 25 31 0 0 chr9 28749585 28749617 -113521827 + AT_rich Low_complexity Low_complexity 1 32 0 315 208 40 32 chr9 28749646 28749771 -113521673 + L1MC5 LINE L1 7806 7931 -30 180 0 0 0 chr9 28750612 28750632 -113520812 + (T)n Simple_repeat Simple_repeat 1 20 0 213 154 0 0 chr9 28751114 28751153 -113520291 + (CA)n Simple_repeat Simple_repeat 2 40 0 216 0 0 0 chr9 28751160 28751184 -113520260 + (TG)n Simple_repeat Simple_repeat 2 25 0 2046 128 0 10 chr9 28751193 28751489 -113519955 - AluSx SINE Alu -19 293 1 2020 144 3 0 chr9 28751868 28752167 -113519277 + AluSx SINE Alu 1 300 -12 1934 121 36 0 chr9 28752216 28752526 -113518918 + AluSx SINE Alu 3 312 0 221 57 29 0 chr9 28753112 28753147 -113518297 + (TA)n Simple_repeat Simple_repeat 2 37 0 757 211 0 0 chr9 28753149 28753291 -113518153 - FRAM SINE Alu -31 145 4 1369 186 74 0 chr9 28753556 28753825 -113517619 + AluJb SINE Alu 5 293 -19 2503 78 0 0 chr9 28754501 28754807 -113516637 + AluY SINE Alu 3 308 -3 1698 162 17 17 chr9 28754807 28755166 -113516278 - L1MA4 LINE L1 -3 6297 5939 1778 142 0 4 chr9 28755710 28755963 -113515481 + AluSx SINE Alu 35 286 -26 269 91 0 0 chr9 28755964 28756008 -113515436 + Alu SINE Alu 257 300 -2 724 132 9 0 chr9 28756410 28756524 -113514920 + Tigger3(Golem) DNA MER2_type 2808 2922 -107 1694 117 51 48 chr9 28756531 28756673 -113514771 + MER46B DNA MER2_type 10 30 -2701 1709 161 39 0 chr9 28756673 28756952 -113514492 + AluJo SINE Alu 1 290 -22 1694 117 51 48 chr9 28756952 28757160 -113514284 + MER46B DNA MER2_type 30 236 0 490 224 37 0 chr9 28757160 28757264 -113514180 + Tigger3(Golem) DNA MER2_type 2931 3038 0 29 0 0 0 chr9 28757685 28757714 -113513730 + AT_rich Low_complexity Low_complexity 1 29 0 773 225 6 0 chr9 28758469 28758629 -113512815 + AluJb SINE Alu 134 294 -18 1981 218 62 46 chr9 28759289 28759834 -113511610 + MLT2B3 LTR ERVL 1 554 0 1984 160 13 0 chr9 28760478 28760778 -113510666 - AluSx SINE Alu -8 304 1 423 228 0 0 chr9 28760865 28760944 -113510500 + AluJo/FLAM SINE Alu 37 115 -197 * 773 190 22 0 chr9 28760937 28761074 -113510370 - AluJo SINE Alu -170 142 3 1957 150 45 31 chr9 28761129 28761488 -113509956 + THE1B LTR MaLR 1 364 0 10116 92 54 10 chr9 28761488 28763001 -113508443 + THE1B-int LTR MaLR 1 1580 0 756 135 0 0 chr9 28763001 28763112 -113508332 + THE1B LTR MaLR 1 111 -253 964 134 87 6 chr9 28763139 28763311 -113508133 + THE1B LTR MaLR 179 364 0 2273 73 3 7 chr9 28764877 28765177 -113506267 - AluSg SINE Alu -11 299 1 203 286 0 14 chr9 28765199 28765269 -113506175 + (TA)n Simple_repeat Simple_repeat 1 69 0 22 35 0 0 chr9 28766401 28766430 -113505014 + AT_rich Low_complexity Low_complexity 1 29 0 2270 94 7 0 chr9 28766736 28767033 -113504411 + AluSg SINE Alu 2 300 -10 499 359 65 8 chr9 28767818 28768066 -113503378 + L2 LINE L2 2511 2772 -542 213 292 62 0 chr9 28768256 28768321 -113503123 + L2 LINE L2 3006 3074 -198 1647 151 185 116 chr9 28768425 28768937 -113502507 + L1MB8 LINE L1 5508 6072 -106 2289 88 3 3 chr9 28768937 28769245 -113502199 + AluSq SINE Alu 1 308 -5 1647 151 185 116 chr9 28769245 28769354 -113502090 + L1MB8 LINE L1 6072 6172 -6 2221 85 0 44 chr9 28769374 28769691 -113501753 + AluY SINE Alu 1 303 -8 2155 130 0 3 chr9 28769889 28770196 -113501248 + AluSx SINE Alu 1 306 -6 577 296 190 25 chr9 28770221 28770465 -113500979 + L1MC/D LINE L1 3424 3626 -2520 2517 53 0 0 chr9 28770465 28770768 -113500676 + AluY SINE Alu 1 303 -8 577 296 190 25 chr9 28770768 28770966 -113500478 + L1MC/D LINE L1 3626 3939 -2207 365 263 82 63 chr9 28770989 28771305 -113500139 + L1MC/D LINE L1 5315 5636 -2172 434 301 56 7 chr9 28771705 28771854 -113499590 + MIR SINE MIR 2 154 -60 24 0 0 0 chr9 28771971 28771995 -113499449 + AT_rich Low_complexity Low_complexity 1 24 0 319 323 101 45 chr9 28772099 28772477 -113498967 + L1M2 LINE L1 345 743 -6106 2483 74 3 0 chr9 28773625 28773935 -113497509 - AluSp SINE Alu -2 311 1 1276 241 29 21 chr9 28774018 28774114 -113497330 + LTR26 LTR ERV1 181 275 -328 3677 139 81 0 chr9 28774114 28774710 -113496734 + LTR9B LTR ERV1 1 644 0 1276 241 29 21 chr9 28774710 28775033 -113496411 + LTR26 LTR ERV1 275 603 0 815 112 77 7 chr9 28775036 28775179 -113496265 + MLT1B LTR MaLR 22 174 -216 2356 68 14 14 chr9 28775183 28775479 -113495965 + AluY SINE Alu 1 296 -15 1218 205 9 0 chr9 28775479 28775703 -113495741 + 7SLRNA srpRNA srpRNA 1 226 -94 764 101 0 2 chr9 28775704 28775952 -113495492 + AluSx SINE Alu 1 299 -13 516 202 0 0 chr9 28775952 28776046 -113495398 + 7SLRNA srpRNA srpRNA 217 310 -10 1162 152 25 0 chr9 28776067 28776265 -113495179 + MLT1B LTR MaLR 188 390 0 314 248 29 19 chr9 28776510 28776615 -113494829 - L2 LINE L2 -44 3269 3164 319 238 169 44 chr9 28776653 28776758 -113494686 + L2 LINE L2 3096 3229 -84 2308 108 3 0 chr9 28776758 28777065 -113494379 - AluSg SINE Alu -2 308 1 319 238 169 44 chr9 28777065 28777119 -113494325 + L2 LINE L2 3229 3275 -38 1438 155 52 48 chr9 28777119 28777390 -113494054 + AluJb SINE Alu 1 272 -40 258 146 18 18 chr9 28777655 28777710 -113493734 - MER116 DNA Mariner 0 80 26 237 167 0 0 chr9 28777739 28777781 -113493663 - MER116 DNA Mariner -38 42 1 1819 109 91 0 chr9 28778247 28778522 -113492922 - AluSx SINE Alu -8 304 5 246 111 67 0 chr9 28778531 28778576 -113492868 + MLT1K LTR MaLR 541 588 0 227 200 0 22 chr9 28778577 28778622 -113492822 + (CATAG)n Simple_repeat Simple_repeat 1 44 0 253 330 127 0 chr9 28778857 28778975 -113492469 + L2 LINE L2 3172 3304 -9 392 255 87 19 chr9 28779028 28779189 -113492255 + MLT1H LTR MaLR 1 172 -377 355 277 207 28 chr9 28779907 28780120 -113491324 - MIR SINE MIR -10 252 2 226 211 28 14 chr9 28780324 28780395 -113491049 - L1 LINE L1 -1197 4949 4878 1635 214 180 20 chr9 28780931 28781441 -113490003 + MLT1E LTR MaLR 1 592 -1 265 252 171 37 chr9 28781641 28781887 -113489557 + L1MC4 LINE L1 7689 7967 -75 1900 166 3 19 chr9 28781915 28782229 -113489215 - AluJo SINE Alu -3 309 1 23 54 0 0 chr9 28782229 28782266 -113489178 + AT_rich Low_complexity Low_complexity 1 37 0 1477 40 0 0 chr9 28782497 28782673 -113488771 + AluY SINE Alu 123 298 -13 227 254 0 0 chr9 28783310 28783365 -113488079 + L1ME4a LINE L1 5990 6044 -77 181 227 0 106 chr9 28783724 28783790 -113487654 + MIR SINE MIR 21 79 -129 55 40 0 0 chr9 28784791 28784867 -113486577 + AT_rich Low_complexity Low_complexity 1 76 0 2365 108 7 0 chr9 28786098 28786405 -113485039 - AluSq SINE Alu -4 309 1 368 258 129 83 chr9 28786466 28786815 -113484629 + L1MC5 LINE L1 7263 7634 -408 2246 62 36 36 chr9 28786938 28787246 -113484198 + AluY SINE Alu 3 310 -1 2252 105 3 0 chr9 28787839 28788143 -113483301 - AluY SINE Alu -6 305 1 1972 112 3 37 chr9 28788155 28788451 -113482993 - AluSx SINE Alu -26 286 1 23 0 0 0 chr9 28788660 28788683 -113482761 + AT_rich Low_complexity Low_complexity 1 23 0 2364 90 0 10 chr9 28789291 28789601 -113481843 - AluSx SINE Alu -5 307 1 29 47 0 0 chr9 28790265 28790308 -113481136 + AT_rich Low_complexity Low_complexity 1 43 0 743 168 168 7 chr9 28790354 28790503 -113480941 - AluJb SINE Alu -6 306 134 22 35 0 0 chr9 28790504 28790533 -113480911 + AT_rich Low_complexity Low_complexity 1 29 0 598 99 0 0 chr9 28790731 28790822 -113480622 - L1PA10 LINE L1 0 6168 6078 2295 106 0 0 chr9 28790836 28791128 -113480316 - AluSg SINE Alu -18 292 1 964 97 8 15 chr9 28791128 28791262 -113480182 - AluSq/x SINE Alu -176 136 4 355 305 122 18 chr9 28791942 28792229 -113479215 - L2 LINE L2 -357 2957 2577 555 282 47 41 chr9 28792385 28792555 -113478889 - MIR SINE MIR -89 173 3 670 204 0 15 chr9 28792622 28792754 -113478690 + FLAM_A SINE Alu 4 133 0 532 247 37 56 chr9 28793225 28793387 -113478057 + MER5B DNA MER1_type 1 159 -19 264 143 20 20 chr9 28793759 28793808 -113477636 + MIR SINE MIR 193 241 -21 206 233 14 27 chr9 28794234 28794307 -113477137 + A-rich Low_complexity Low_complexity 3 74 0 193 277 270 20 chr9 28794310 28794458 -113476986 - MIR SINE MIR -13 249 65 340 253 13 97 chr9 28794548 28794609 -113476835 + MER5B DNA MER1_type 1 66 -112 2252 105 3 0 chr9 28794609 28794904 -113476540 + AluSp SINE Alu 2 297 -16 340 253 13 97 chr9 28794904 28794996 -113476448 + MER5B DNA MER1_type 66 141 -37 286 315 0 45 chr9 28794988 28795099 -113476345 + MER5A DNA MER1_type 82 187 -2 * 209 327 45 9 chr9 28795210 28795320 -113476124 - MIR SINE MIR 0 262 149 590 275 19 6 chr9 28796365 28796525 -113474919 - MIR SINE MIR -99 163 2 981 289 45 48 chr9 28797543 28798152 -113473292 + L2 LINE L2 2395 3049 -264 354 230 18 62 chr9 28798229 28798342 -113473102 + MLT1J2 LTR MaLR 64 171 -279 3489 208 93 37 chr9 28798371 28799431 -113472013 - Charlie1a DNA MER1_type -335 1120 1 1160 155 6 0 chr9 28799554 28799728 -113471716 - AluJb SINE Alu -15 297 123 1794 175 0 13 chr9 28801009 28801318 -113470126 - AluJo SINE Alu -7 305 1 31 44 0 0 chr9 28803760 28803805 -113467639 + AT_rich Low_complexity Low_complexity 1 45 0 2035 149 0 7 chr9 28803997 28804306 -113467138 - AluSx SINE Alu -5 307 1 460 283 92 3 chr9 28805439 28805608 -113465836 + MIR SINE MIR 8 189 -19 1811 174 0 13 chr9 28805800 28806110 -113465334 + AluJo SINE Alu 2 307 -5 1101 204 155 15 chr9 28806113 28806377 -113465067 + AluJb SINE Alu 2 302 0 321 256 12 12 chr9 28806763 28806849 -113464595 + MLT1I LTR MaLR 36 121 -288 2347 64 7 3 chr9 28806990 28807286 -113464158 - AluY SINE Alu -14 297 1 225 322 35 23 chr9 28807356 28807443 -113464001 + MLT1I LTR MaLR 243 330 -79 2102 136 0 3 chr9 28807465 28807766 -113463678 - AluSq SINE Alu -13 300 1 610 250 65 35 chr9 28807836 28808036 -113463408 + L1MC4a LINE L1 6704 6909 -899 613 225 48 43 chr9 28808061 28808292 -113463152 + L1MC5 LINE L1 6997 7228 -733 512 227 131 48 chr9 28808316 28808638 -113462806 + L1MC5 LINE L1 7226 7512 -449 674 130 0 0 chr9 28808643 28808743 -113462701 + AluS SINE Alu 1 100 -213 1655 97 4 13 chr9 28808743 28809005 -113462439 + AluSq SINE Alu 58 317 0 258 198 206 93 chr9 28809012 28809097 -113462347 + L1MC5 LINE L1 7546 7620 -341 216 0 0 0 chr9 28809097 28809121 -113462323 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 258 198 206 93 chr9 28809121 28809180 -113462264 + L1MC5 LINE L1 7620 7671 -290 1425 190 75 16 chr9 28809180 28809501 -113461943 + MER58B DNA MER1_type 2 341 0 258 198 206 93 chr9 28809501 28809602 -113461842 + L1MC5 LINE L1 7671 7820 -141 1867 105 6 71 chr9 28809736 28809870 -113461574 + AluSx SINE Alu 1 142 -170 2279 106 0 0 chr9 28809870 28810171 -113461273 + AluSc SINE Alu 1 301 -8 1867 105 6 71 chr9 28810171 28810361 -113461083 + AluSx SINE Alu 142 304 -8 25 0 0 0 chr9 28810361 28810386 -113461058 + AT_rich Low_complexity Low_complexity 1 25 0 2462 72 0 3 chr9 28810389 28810696 -113460748 + AluY SINE Alu 1 306 -5 1882 180 0 0 chr9 28810696 28810990 -113460454 - AluJo SINE Alu -17 295 2 2037 122 10 3 chr9 28811358 28811661 -113459783 - AluSx SINE Alu -7 305 1 747 110 63 0 chr9 28812572 28812699 -113458745 + MER30 DNA MER1_type 1 135 -95 35 24 0 0 chr9 28812729 28812771 -113458673 + AT_rich Low_complexity Low_complexity 1 42 0 439 250 146 39 chr9 28813009 28813269 -113458175 + HAL1 LINE L1 1 288 -2219 * 8082 143 23 21 chr9 28813268 28813741 -113457703 + L1MB3 LINE L1 18 489 -5895 2237 110 0 3 chr9 28813741 28814042 -113457402 + AluSq SINE Alu 1 300 -13 8082 143 23 21 chr9 28814042 28815110 -113456334 + L1MB3 LINE L1 489 1561 -4823 585 266 0 0 chr9 28815110 28815234 -113456210 + FAM SINE Alu 2 125 -60 1075 204 13 35 chr9 28815234 28815460 -113455984 + AluJo SINE Alu 85 305 -7 3313 164 85 32 chr9 28815463 28815989 -113455455 + L1MB3 LINE L1 1686 2183 -4199 2409 71 0 0 chr9 28815989 28816323 -113455121 + AluY SINE Alu 1 334 0 3313 164 85 32 chr9 28816323 28816942 -113454502 + L1MB3 LINE L1 2183 2900 -3482 3221 155 31 3 chr9 28816954 28817561 -113453883 + L1MB3 LINE L1 5795 6418 -1 189 74 0 0 chr9 28818034 28818061 -113453383 + (CAAAAA)n Simple_repeat Simple_repeat 3 29 0 852 235 33 42 chr9 28818292 28818598 -113452846 + HAL1 LINE L1 720 1022 -1485 527 209 29 14 chr9 28818669 28818808 -113452636 + HAL1 LINE L1 1211 1351 -1156 3143 35 0 0 chr9 28818909 28819303 -113452141 - L1P LINE L1 -1255 4891 4498 322 267 55 36 chr9 28819645 28819810 -113451634 + L1ME LINE L1 5673 5840 -281 23 33 0 0 chr9 28820231 28820261 -113451183 + AT_rich Low_complexity Low_complexity 1 30 0 200 152 0 0 chr9 28820268 28820301 -113451143 - L2 LINE L2 -17 3296 3264 2931 159 36 82 chr9 28820329 28821058 -113450386 - L1PB4 LINE L1 -7 6149 5455 700 306 94 25 chr9 28821173 28821618 -113449826 + HAL1 LINE L1 1620 2095 -412 2355 54 13 0 chr9 28821657 28821955 -113449489 + AluY SINE Alu 1 302 -9 256 192 115 0 chr9 28821980 28822058 -113449386 + HAL1 LINE L1 2219 2305 -202 1833 166 0 23 chr9 28822721 28823022 -113448422 + AluJo SINE Alu 1 294 -18 1955 173 59 11 chr9 28823039 28823414 -113448030 + MSTD LTR MaLR 4 396 0 1085 121 136 29 chr9 28823547 28823753 -113447691 + MER30 DNA MER1_type 3 230 0 2327 82 10 0 chr9 28823904 28824196 -113447248 + AluSp SINE Alu 1 295 -18 309 247 118 21 chr9 28824497 28824590 -113446854 - L3 LINE CR1 -6 1571 1470 * 444 341 40 0 chr9 28824570 28824746 -113446698 + L2 LINE L2 2578 2760 -554 225 235 190 114 chr9 28824815 28825104 -113446340 + L2 LINE L2 2943 3253 -60 249 250 313 21 chr9 28825635 28825779 -113445665 - MIR3 SINE MIR -9 199 14 249 192 39 0 chr9 28826906 28826958 -113444486 - MER5A DNA MER1_type -80 109 56 2331 79 16 0 chr9 28827515 28827819 -113443625 - AluSc SINE Alu 0 309 1 364 188 43 0 chr9 28828293 28828362 -113443082 - MIR SINE MIR -70 192 121 768 129 282 38 chr9 28828365 28828574 -113442870 + MER93b LTR ERV1 1 260 -113 994 194 114 38 chr9 28828636 28829064 -113442380 - LTR8A LTR ERV1 -24 627 143 2489 75 0 3 chr9 28829087 28829393 -113442051 + AluSc SINE Alu 1 305 -4 258 185 15 15 chr9 28829544 28829609 -113441835 - MER87 LTR ERV1 -395 146 82 342 179 64 13 chr9 28829650 28829728 -113441716 - LTR8 LTR ERV1 -607 84 3 508 168 75 0 chr9 28829732 28829839 -113441605 + MER93a LTR ERV1 288 402 0 181 379 0 0 chr9 28829901 28829959 -113441485 - MIR SINE MIR -100 108 51 1877 135 14 3 chr9 28830673 28830961 -113440483 + AluSx SINE Alu 1 291 -21 2364 84 3 13 chr9 28831325 28831633 -113439811 - AluSq SINE Alu -8 305 1 287 220 37 46 chr9 28831853 28831962 -113439482 - MER34 LTR ERV1 0 542 435 407 227 105 63 chr9 28832324 28832562 -113438882 - L1MC4a LINE L1 -1962 5846 5599 826 146 7 29 chr9 28832729 28832866 -113438578 - AluJo SINE Alu -178 134 1 823 198 77 0 chr9 28833019 28833201 -113438243 + MER67A LTR ERV1 348 543 0 1568 167 64 4 chr9 28833246 28833589 -113437855 + MER93a LTR ERV1 1 402 0 440 317 22 27 chr9 28833631 28833814 -113437630 - L2 LINE L2 -180 3092 2911 195 256 0 0 chr9 28834060 28834103 -113437341 + MIR SINE MIR 72 114 -148 536 204 15 15 chr9 28834147 28834279 -113437165 - LTR67 LTR ERVL -2 555 424 24 0 0 0 chr9 28834887 28834911 -113436533 + AT_rich Low_complexity Low_complexity 1 24 0 351 293 103 35 chr9 28836001 28836175 -113435269 - MIR SINE MIR -54 208 23 289 323 174 0 chr9 28836600 28836761 -113434683 - L2 LINE L2 -990 2324 2136 1724 51 174 16 chr9 28836856 28837109 -113434335 - AluY SINE Alu -8 293 1 2404 55 0 3 chr9 28838140 28838465 -113432979 - AluY SINE Alu 0 311 1 456 352 87 7 chr9 28839107 28839394 -113432050 + L2 LINE L2 1876 2185 -1129 559 262 52 56 chr9 28839399 28839651 -113431793 + MER112 DNA MER1_type 9 259 -1 522 357 101 47 chr9 28839729 28840140 -113431304 - L2 LINE L2 -2379 935 469 2174 98 0 23 chr9 28840140 28840446 -113430998 - AluY SINE Alu -12 299 1 522 357 101 47 chr9 28840446 28840740 -113430704 - L2 LINE L2 -2845 469 192 451 209 73 36 chr9 28841170 28841280 -113430164 + FRAM SINE Alu 38 151 -25 313 336 102 33 chr9 28841528 28841980 -113429464 + L1M4 LINE L1 4802 5284 -862 228 67 0 0 chr9 28841983 28842013 -113429431 + (T)n Simple_repeat Simple_repeat 1 30 0 7590 28 4 16 chr9 28842014 28843010 -113428434 - L1PA2 LINE L1 0 6155 5163 221 237 50 36 chr9 28843010 28843149 -113428295 + A-rich Low_complexity Low_complexity 5 145 0 248 228 0 22 chr9 28843162 28843254 -113428190 - L1PA2 LINE L1 -1130 5016 4927 8466 187 51 22 chr9 28843584 28845364 -113426080 - L1 LINE L1 -802 6046 4171 2319 99 0 0 chr9 28845364 28845658 -113425786 - AluSg SINE Alu -16 294 1 8466 187 51 22 chr9 28845658 28846366 -113425078 - L1 LINE L1 -2677 4171 3485 1636 229 40 69 chr9 28846361 28847275 -113424169 - L1 LINE L1 -3687 3161 2273 * 367 295 53 70 chr9 28847399 28847626 -113423818 - L1ME4a LINE L1 -111 6010 5788 26515 196 27 33 chr9 28847891 28853347 -113418097 - HERVI LTR ERV1 -2338 5447 26 1954 205 70 18 chr9 28853372 28853860 -113417584 - LTR10D LTR ERV1 0 513 1 247 245 49 20 chr9 28854091 28854193 -113417251 - L1ME4a LINE L1 -1 6120 6016 597 221 16 8 chr9 28854247 28854374 -113417070 - FLAM_A SINE Alu -2 131 4 683 225 0 0 chr9 28854417 28854546 -113416898 + FLAM_A SINE Alu 2 130 -3 1993 161 0 0 chr9 28854583 28854888 -113416556 - AluSx SINE Alu -7 305 1 310 215 28 3 chr9 28854902 28854986 -113416458 - L1M3 LINE L1 -378 5786 5703 2360 102 0 6 chr9 28856800 28857114 -113414330 - AluSx SINE Alu 0 312 1 462 246 77 8 chr9 28857248 28857378 -113414066 - MER3 DNA MER1_type -70 139 1 1462 187 56 47 chr9 28857978 28858337 -113413107 - MLT1A1 LTR MaLR -3 362 1 1006 171 0 18 chr9 28858343 28858513 -113412931 - FRAM SINE Alu -9 167 1 2043 135 0 17 chr9 28858522 28858819 -113412625 - AluSx SINE Alu -20 292 1 2173 117 3 3 chr9 28858868 28859167 -113412277 - AluSx SINE Alu -13 299 1 1840 136 6 57 chr9 28859364 28859543 -113411901 - AluSq SINE Alu -12 301 143 2334 87 10 3 chr9 28859543 28859854 -113411590 - AluSp SINE Alu 0 313 1 1840 136 6 57 chr9 28859854 28859991 -113411453 - AluSq SINE Alu -170 143 1 837 211 57 29 chr9 28860485 28860694 -113410750 + MER20 DNA MER1_type 1 215 -4 2204 119 0 0 chr9 28860873 28861183 -113410261 - AluSx SINE Alu -2 310 1 5315 119 23 5 chr9 28861732 28862556 -113408888 + L1PA13 LINE L1 5321 6159 -4 34 0 0 0 chr9 28862582 28862616 -113408828 + AT_rich Low_complexity Low_complexity 1 34 0 180 77 0 0 chr9 28862818 28862844 -113408600 + (TTTTTG)n Simple_repeat Simple_repeat 5 30 0 1854 171 7 3 chr9 28862867 28863176 -113408268 - AluJb SINE Alu 0 312 3 1938 164 0 7 chr9 28863180 28863484 -113407960 - AluJo SINE Alu -10 302 1 2022 92 0 121 chr9 28863603 28863951 -113407493 - AluSg SINE Alu -4 306 1 286 258 8 75 chr9 28864034 28864154 -113407290 + MIR SINE MIR 149 260 -2 272 263 168 0 chr9 28864255 28864350 -113407094 + MIR SINE MIR 119 229 -33 2292 85 3 0 chr9 28864496 28864813 -113406631 - AluSp SINE Alu 0 313 1 431 237 0 0 chr9 28865755 28865848 -113405596 + L1PB4 LINE L1 5976 6068 -88 249 328 59 34 chr9 28866481 28866600 -113404844 - MER5A DNA MER1_type -3 186 65 272 278 37 49 chr9 28866722 28866775 -113404669 + MER103 DNA DNA 6 58 -108 2288 113 0 0 chr9 28866775 28867084 -113404360 - AluSg SINE Alu -1 309 1 272 278 37 49 chr9 28867084 28867192 -113404252 + MER103 DNA DNA 58 165 -1 21 36 0 0 chr9 28868209 28868237 -113403207 + AT_rich Low_complexity Low_complexity 1 28 0 3986 202 7 17 chr9 28868571 28868617 -113402827 - L1 LINE L1 -1704 4442 4397 213 39 0 0 chr9 28868617 28868643 -113402801 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 3986 202 7 17 chr9 28868643 28868675 -113402769 - L1 LINE L1 -1749 4397 4366 2229 88 14 0 chr9 28868675 28868970 -113402474 - AluY SINE Alu -12 299 1 3986 202 7 17 chr9 28868970 28869771 -113401673 - L1 LINE L1 -1780 4366 3571 * 9327 111 14 5 chr9 28869762 28871189 -113400255 + L1PBa LINE L1 827 2266 -4597 1523 136 0 0 chr9 28871195 28871409 -113400035 + AluSg SINE Alu 1 214 -96 1297 201 71 28 chr9 28871516 28871908 -113399536 - MLT1C LTR MaLR -56 411 3 1443 191 22 18 chr9 28872621 28872921 -113398523 - AluJo SINE Alu 0 312 21 403 133 81 204 chr9 28873523 28873734 -113397710 - MER53 DNA DNA -4 185 1 757 179 130 86 chr9 28874257 28874386 -113397058 - L1MB8 LINE L1 0 6178 6056 1412 189 62 24 chr9 28874386 28874677 -113396767 - AluJo SINE Alu 0 302 1 757 179 130 86 chr9 28874677 28874848 -113396596 - L1MB8 LINE L1 -122 6056 5865 283 219 0 0 chr9 28874855 28874919 -113396525 - L1MB8 LINE L1 -1279 4867 4804 1548 161 39 0 chr9 28875101 28875380 -113396064 - L1MB8 LINE L1 -345 5833 5544 1166 139 0 0 chr9 28875472 28875638 -113395806 - AluSg/x SINE Alu -13 297 132 2375 84 0 0 chr9 28875960 28876269 -113395175 - AluY SINE Alu -2 309 1 2410 117 5 3 chr9 28876273 28876641 -113394803 - L1PB1 LINE L1 -1 6150 5782 237 139 0 0 chr9 28876641 28876684 -113394760 + (TATATG)n Simple_repeat Simple_repeat 2 44 0 3444 146 21 17 chr9 28876696 28877552 -113393892 - L1PB1 LINE L1 -363 5788 4928 1510 209 15 0 chr9 28878489 28878762 -113392682 - AluJo SINE Alu -35 277 1 181 310 69 0 chr9 28878906 28878964 -113392480 - L2 LINE L2 -1 3312 3251 2178 96 0 27 chr9 28878997 28879290 -113392154 + AluSc SINE Alu 7 291 -18 2136 95 3 34 chr9 28879653 28879948 -113391496 + AluSx SINE Alu 1 286 -26 1360 195 29 46 chr9 28880723 28881030 -113390414 - AluJb SINE Alu 0 302 1 22 0 0 0 chr9 28881243 28881265 -113390179 + AT_rich Low_complexity Low_complexity 1 22 0 257 123 82 14 chr9 28881296 28881369 -113390075 - HAL1 LINE L1 -155 2352 2275 715 219 16 0 chr9 28881454 28881637 -113389807 - L1MA4 LINE L1 -7 6293 6108 1211 61 12 6 chr9 28881642 28881805 -113389639 + L1PA11 LINE L1 6010 6173 -1 4472 158 19 33 chr9 28881805 28882885 -113388559 - L1MA4 LINE L1 -190 6110 5042 1004 112 134 11 chr9 28882907 28883086 -113388358 - MSTA LTR MaLR -54 374 174 1078 127 0 0 chr9 28883086 28883236 -113388208 - AluSg/x SINE Alu -16 294 145 449 99 0 28 chr9 28883238 28883309 -113388135 - LTR7 LTR ERV1 -2 448 380 361 136 0 0 chr9 28883422 28883481 -113387963 - AluJ/FLAM SINE Alu -243 59 1 256 276 74 39 chr9 28883481 28883741 -113387703 + L1ME4a LINE L1 5625 5887 -234 330 261 54 36 chr9 28883803 28883914 -113387530 + L1ME4a LINE L1 5986 6098 -23 4551 95 14 14 chr9 28884017 28884710 -113386734 + L1MA1 LINE L1 5610 6302 0 21 57 0 0 chr9 28884710 28884745 -113386699 + AT_rich Low_complexity Low_complexity 1 35 0 2202 120 13 0 chr9 28884958 28885258 -113386186 + AluSg SINE Alu 1 304 -6 194 222 0 79 chr9 28885958 28885989 -113385455 + L2 LINE L2 2992 3017 -255 2202 93 7 10 chr9 28885989 28886289 -113385155 + AluSx SINE Alu 1 299 -13 194 222 0 79 chr9 28886289 28886320 -113385124 + L2 LINE L2 3017 3049 -223 1229 299 75 9 chr9 28886326 28886767 -113384677 - MLT1H LTR MaLR -9 540 71 2344 208 50 80 chr9 28886815 28886864 -113384580 - L1ME1 LINE L1 -5 6161 6112 3442 170 70 4 chr9 28886864 28887507 -113383937 - L1MB2 LINE L1 -7 6164 5472 213 119 0 0 chr9 28887507 28887549 -113383895 + (TTG)n Simple_repeat Simple_repeat 1 42 0 3442 170 70 4 chr9 28887549 28887589 -113383855 - L1MB2 LINE L1 -699 5472 5436 2344 208 50 80 chr9 28887589 28888956 -113382488 - L1ME1 LINE L1 -54 6112 4790 2316 88 3 0 chr9 28888956 28889250 -113382194 - AluSc SINE Alu -14 295 1 203 250 77 0 chr9 28890145 28890197 -113381247 - L2 LINE L2 -3 3269 3214 23 0 0 0 chr9 28890496 28890519 -113380925 + AT_rich Low_complexity Low_complexity 1 23 0 1749 123 104 38 chr9 28890761 28891077 -113380367 - MER1B DNA MER1_type 0 337 1 257 367 22 0 chr9 28891630 28891720 -113379724 - L3 LINE CR1 -87 1490 1399 874 339 119 21 chr9 28891839 28892517 -113378927 - L2 LINE L2 -182 3090 2332 502 196 0 31 chr9 28893588 28893685 -113377759 + Tigger2 DNA MER2_type 2614 2707 -11 26 74 0 0 chr9 28893766 28893820 -113377624 + AT_rich Low_complexity Low_complexity 1 54 0 930 200 6 0 chr9 28893940 28894100 -113377344 - MER5A DNA MER1_type -1 188 28 385 147 59 0 chr9 28894467 28894535 -113376909 + Tigger2 DNA MER2_type 2553 2624 -94 601 233 70 52 chr9 28894540 28894712 -113376732 - MIR SINE MIR -65 197 23 2215 105 0 3 chr9 28894729 28895014 -113376430 + AluSp SINE Alu 1 284 -29 666 163 0 0 chr9 28894916 28895014 -113376430 + AluSp/q SINE Alu 187 322 0 249 53 26 0 chr9 28895014 28895052 -113376392 + (TAAA)n Simple_repeat Simple_repeat 2 180 0 491 289 138 4 chr9 28895626 28895879 -113375565 + L1ME LINE L1 5463 5749 -372 1822 142 16 67 chr9 28895964 28896280 -113375164 - AluJb SINE Alu -9 303 4 201 219 24 0 chr9 28896298 28896339 -113375105 - MIR SINE MIR -217 45 4 26 74 0 0 chr9 28896602 28896656 -113374788 + AT_rich Low_complexity Low_complexity 1 54 0 2464 86 0 3 chr9 28896670 28896973 -113374471 - AluSg SINE Alu -8 302 1 1025 181 110 8 chr9 28897166 28897420 -113374024 + HAL1 LINE L1 2 281 -2226 1814 147 7 33 chr9 28897549 28897731 -113373713 + AluJo SINE Alu 3 175 -137 704 0 9 56 chr9 28897731 28897838 -113373606 + (TTTTA)n Simple_repeat Simple_repeat 3 104 0 1814 147 7 33 chr9 28897838 28897961 -113373483 + AluJo SINE Alu 175 300 -12 2184 77 42 3 chr9 28898076 28898362 -113373082 - AluY SINE Alu -14 297 1 920 208 6 17 chr9 28898399 28898572 -113372872 + FAM SINE Alu 1 171 -4 1300 76 0 0 chr9 28898993 28899150 -113372294 - AluSg/x SINE Alu -12 300 144 763 192 0 8 chr9 28899151 28899281 -113372163 + AluJo SINE Alu 121 249 -63 22 0 0 0 chr9 28899774 28899796 -113371648 + AT_rich Low_complexity Low_complexity 1 22 0 2219 98 3 3 chr9 28899796 28900093 -113371351 - AluSp SINE Alu -16 297 1 2287 86 0 0 chr9 28900787 28901078 -113370366 - AluSc SINE Alu -13 296 6 1996 188 42 24 chr9 28901347 28901847 -113369597 + L1M4 LINE L1 4738 5246 -900 324 320 31 39 chr9 28902102 28902230 -113369214 - L2 LINE L2 0 3272 3146 480 305 184 24 chr9 28903003 28903017 -113368427 - L3 LINE CR1 -376 1201 1191 2103 112 20 10 chr9 28903017 28903322 -113368122 - AluSx SINE Alu -4 308 1 480 305 184 24 chr9 28903322 28903681 -113367763 - L3 LINE CR1 -386 1191 768 1354 149 42 42 chr9 28903730 28903992 -113367452 + MER2 DNA MER2_type 2 263 -82 746 157 30 37 chr9 28904042 28904176 -113367268 - FLAM_C SINE Alu 0 133 1 758 207 7 0 chr9 28904260 28904395 -113367049 + AluJo SINE Alu 1 136 -176 2055 329 34 28 chr9 28904642 28905013 -113366431 - Tigger7 DNA MER2_type -512 1975 1608 2163 96 3 56 chr9 28905013 28905335 -113366109 + AluSg SINE Alu 1 305 -5 2055 329 34 28 chr9 28905335 28906335 -113365109 - Tigger7 DNA MER2_type -879 1608 596 2270 96 3 7 chr9 28906351 28906654 -113364790 - AluSq SINE Alu -11 302 1 180 227 68 0 chr9 28907050 28907094 -113364350 + L2 LINE L2 3217 3263 -9 1028 143 16 28 chr9 28907287 28907469 -113363975 + Tigger2a DNA MER2_type 1 180 -254 4035 159 16 4 chr9 28907605 28908410 -113363034 - L1 LINE L1 -1096 5050 4236 2287 110 0 0 chr9 28908447 28908746 -113362698 + AluSx SINE Alu 2 300 -12 230 196 0 18 chr9 28910401 28910457 -113360987 - L1MC5 LINE L1 -99 7862 7808 23 33 0 0 chr9 28910507 28910537 -113360907 + AT_rich Low_complexity Low_complexity 1 30 0 2249 113 0 13 chr9 28911040 28911350 -113360094 - AluSx SINE Alu -6 306 1 1236 234 41 24 chr9 28911522 28911817 -113359627 + AluJo SINE Alu 1 300 -12 367 255 0 21 chr9 28911823 28911964 -113359480 + GA-rich Low_complexity Low_complexity 3 140 0 2555 62 0 3 chr9 28912038 28912343 -113359101 - AluY SINE Alu -7 304 1 190 314 12 70 chr9 28912445 28912531 -113358913 + MIR SINE MIR 84 164 -98 2043 129 3 7 chr9 28913564 28913866 -113357578 - AluSq SINE Alu -12 301 1 262 240 0 0 chr9 28914411 28914461 -113356983 + MER5A DNA MER1_type 9 58 -131 624 81 0 35 chr9 28914803 28914889 -113356555 + AluSg/x SINE Alu 209 291 -19 1570 149 81 50 chr9 28915036 28915178 -113356266 - L1MA4 LINE L1 -4 6296 6160 2351 47 6 38 chr9 28915178 28915495 -113355949 - AluY SINE Alu -4 307 1 1570 149 81 50 chr9 28915495 28915684 -113355760 - L1MA4 LINE L1 -140 6160 5949 2084 72 79 7 chr9 28915684 28915974 -113355470 - AluY SINE Alu 0 311 1 1570 149 81 50 chr9 28915974 28916023 -113355421 - L1MA4 LINE L1 -351 5949 5903 1582 100 0 0 chr9 28916264 28916474 -113354970 + AluSg/x SINE Alu 86 295 -14 208 244 12 12 chr9 28916589 28916675 -113354769 + (TATATG)n Simple_repeat Simple_repeat 5 90 0 1555 196 28 11 chr9 28917439 28917724 -113353720 - AluJo SINE Alu -22 290 1 2587 62 0 3 chr9 28917915 28918223 -113353221 - AluY SINE Alu -4 307 1 213 247 82 82 chr9 28918270 28918355 -113353089 - MIR SINE MIR -11 251 167 776 273 127 18 chr9 28918417 28918930 -113352514 - L1MC4a LINE L1 -1915 5893 5325 2332 101 0 0 chr9 28919140 28919438 -113352006 + AluY SINE Alu 1 298 -13 2267 105 3 0 chr9 28919827 28920113 -113351331 - AluSg SINE Alu -23 287 1 2379 84 0 3 chr9 28920562 28920859 -113350585 + AluSg SINE Alu 1 296 -14 441 342 47 10 chr9 28920902 28921095 -113350349 + MIR SINE MIR 46 245 -17 205 238 36 0 chr9 28921291 28921375 -113350069 + (TA)n Simple_repeat Simple_repeat 1 87 0 219 69 0 0 chr9 28921551 28921580 -113349864 + (T)n Simple_repeat Simple_repeat 1 29 0 2378 76 13 0 chr9 28922346 28922647 -113348797 + AluSx SINE Alu 1 305 -7 2304 65 3 17 chr9 28922744 28923038 -113348406 - AluY SINE Alu -17 294 5 1029 233 22 13 chr9 28923089 28923321 -113348123 + MER8 DNA MER2_type 2 235 -4 5391 65 124 0 chr9 28923393 28924128 -113347316 + LTR12 LTR ERV1 1 826 0 24 32 0 0 chr9 28924341 28924372 -113347072 + AT_rich Low_complexity Low_complexity 1 31 0 2217 95 0 13 chr9 28924752 28925056 -113346388 + AluSc SINE Alu 1 300 -9 286 247 0 0 chr9 28925103 28925176 -113346268 + L1M4 LINE L1 4540 4612 -1534 2216 107 0 0 chr9 28925595 28925884 -113345560 + AluSg SINE Alu 6 294 -16 439 253 146 28 chr9 28926216 28926394 -113345050 + MIR SINE MIR 8 206 -56 1889 108 4 0 chr9 28926753 28927004 -113344440 - AluSx SINE Alu -37 275 24 239 143 0 18 chr9 28929068 28929124 -113342320 + (TC)n Simple_repeat Simple_repeat 2 56 0 2061 113 0 0 chr9 28929618 28929893 -113341551 + AluSg SINE Alu 35 309 -1 1709 155 60 3 chr9 28930145 28930429 -113341015 - AluJo SINE Alu -12 300 1 1940 138 27 17 chr9 28930473 28930770 -113340674 - AluSx SINE Alu -12 300 1 247 215 130 57 chr9 28930891 28931068 -113340376 - L1MC/D LINE L1 -2331 5477 5288 180 0 0 0 chr9 28931072 28931092 -113340352 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1726 82 41 0 chr9 28931104 28931323 -113340121 + AluSg SINE Alu 1 228 -82 180 0 0 0 chr9 28931323 28931343 -113340101 + (A)n Simple_repeat Simple_repeat 1 20 0 580 333 105 27 chr9 28931365 28931953 -113339491 - L1MC/D LINE L1 -919 5227 4594 1580 103 24 0 chr9 28932696 28932949 -113338495 + L1P LINE L1 3849 4107 -2039 1225 170 46 32 chr9 28933050 28933332 -113338112 - L1M4 LINE L1 -460 5718 5433 2549 59 3 0 chr9 28933361 28933667 -113337777 + AluY SINE Alu 1 307 -4 2202 106 0 0 chr9 28933670 28933981 -113337463 - AluSc SINE Alu 0 311 1 531 277 113 9 chr9 28933981 28934309 -113337135 - HAL1 LINE L1 -2144 363 2 223 269 0 39 chr9 28934632 28934710 -113336734 - MIR SINE MIR 0 262 188 4834 125 50 47 chr9 28934710 28935818 -113335626 + pTR5 LTR ERV1 741 2025 -413 230 276 10 0 chr9 28935818 28935916 -113335528 + LTR30 LTR ERV1 544 642 -80 1506 92 0 0 chr9 28935923 28936140 -113335304 + pTR5 LTR ERV1 175 391 -2047 206 242 30 146 chr9 28936889 28937054 -113334390 - L2 LINE L2 -340 2973 2828 290 308 44 33 chr9 28937591 28937682 -113333762 - L2 LINE L2 -55 3217 3126 186 370 125 36 chr9 28937848 28938151 -113333293 + L2 LINE L2 2429 2758 -556 2096 150 94 13 chr9 28938281 28938675 -113332769 + MSTB LTR MaLR 1 426 0 9362 186 8 2 chr9 28938675 28940315 -113331129 + MSTB-int LTR MaLR 1 1651 0 1847 141 149 16 chr9 28940315 28940691 -113330753 + MSTB LTR MaLR 1 426 0 2269 107 0 0 chr9 28940707 28941006 -113330438 - AluSc SINE Alu -10 299 1 2042 204 42 75 chr9 28941211 28941485 -113329959 + L1ME1 LINE L1 2339 2621 -3525 543 52 0 26 chr9 28941485 28941562 -113329882 + L1PA8 LINE L1 6096 6170 -2 2042 204 42 75 chr9 28941562 28941613 -113329831 + L1ME1 LINE L1 2621 2672 -3474 1608 211 7 0 chr9 28941613 28941897 -113329547 - AluJo SINE Alu -16 296 11 2042 204 42 75 chr9 28941897 28942088 -113329356 + L1ME1 LINE L1 2672 2868 -3278 2290 113 0 3 chr9 28942088 28942398 -113329046 + AluSg1 SINE Alu 1 309 0 2042 204 42 75 chr9 28942398 28942689 -113328755 + L1ME1 LINE L1 2868 3121 -3025 * 2311 206 47 75 chr9 28942687 28942788 -113328656 + L1ME1 LINE L1 4658 4760 -1406 2264 104 3 0 chr9 28942788 28943087 -113328357 + AluSx SINE Alu 1 300 -12 2311 206 47 75 chr9 28943087 28943136 -113328308 + L1ME1 LINE L1 4760 4809 -1357 1741 179 34 3 chr9 28943136 28943427 -113328017 + AluJo SINE Alu 1 300 -12 2311 206 47 75 chr9 28943427 28944792 -113326652 + L1ME1 LINE L1 4809 6112 -54 3506 163 72 3 chr9 28944792 28944832 -113326612 + L1MB2 LINE L1 5436 5472 -699 213 119 0 0 chr9 28944832 28944874 -113326570 + (CAA)n Simple_repeat Simple_repeat 1 42 0 3506 163 72 3 chr9 28944874 28945515 -113325929 + L1MB2 LINE L1 5472 6164 -7 2311 206 47 75 chr9 28945515 28945564 -113325880 + L1ME1 LINE L1 6112 6161 -5 1089 299 75 9 chr9 28945612 28946053 -113325391 + MLT1H LTR MaLR 71 540 -9 193 222 0 79 chr9 28946059 28946090 -113325354 - L2 LINE L2 -223 3049 3024 2197 94 7 10 chr9 28946090 28946388 -113325056 - AluSx SINE Alu -15 297 1 193 222 0 79 chr9 28946388 28946419 -113325025 - L2 LINE L2 -248 3024 2992 2228 120 13 0 chr9 28947119 28947418 -113324026 - AluSg SINE Alu -7 303 1 21 57 0 0 chr9 28947631 28947666 -113323778 + AT_rich Low_complexity Low_complexity 1 35 0 4522 95 14 14 chr9 28947666 28948359 -113323085 - L1MA1 LINE L1 0 6302 5610 275 278 119 58 chr9 28948462 28948899 -113322545 - L1ME4a LINE L1 -23 6098 5628 2258 91 0 20 chr9 28948899 28949195 -113322249 + AluSg SINE Alu 5 294 -16 275 278 119 58 chr9 28949195 28949236 -113322208 - L1ME4a LINE L1 -493 5628 5591 2264 100 36 0 chr9 28949864 28950165 -113321279 - AluSx SINE Alu 0 312 1 581 276 71 22 chr9 28950296 28950521 -113320923 - MIR SINE MIR -7 255 20 222 128 0 0 chr9 28951468 28951507 -113319937 + (CAG)n Simple_repeat Simple_repeat 1 39 0 24 32 0 0 chr9 28951887 28951918 -113319526 + AT_rich Low_complexity Low_complexity 1 31 0 2351 84 3 3 chr9 28954129 28954428 -113317016 - AluSx SINE Alu -13 299 1 685 315 47 47 chr9 28954941 28955347 -113316097 + L3 LINE CR1 719 1124 -453 457 286 81 11 chr9 28955322 28955512 -113315932 + MIR SINE MIR 16 221 -41 * 2015 123 7 0 chr9 28955539 28955837 -113315607 + AluSc SINE Alu 1 300 0 2266 117 0 0 chr9 28956515 28956814 -113314630 + AluSg SINE Alu 1 299 -11 276 122 0 0 chr9 28956832 28956873 -113314571 - MADE1 DNA Mariner -37 43 3 353 312 60 6 chr9 28957091 28957285 -113314159 - L2 LINE L2 -8 3305 3134 2038 157 0 0 chr9 28957441 28957746 -113313698 + AluJb SINE Alu 1 305 -7 369 337 136 30 chr9 28957953 28958520 -113312924 - L2 LINE L2 -357 2957 2291 2152 104 14 0 chr9 28958520 28958807 -113312637 - AluSg SINE Alu -19 291 1 369 337 136 30 chr9 28958807 28958980 -113312464 - L2 LINE L2 -1023 2291 2138 2474 53 0 13 chr9 28959084 28959388 -113312056 - AluY SINE Alu -11 300 1 343 258 196 6 chr9 28960412 28960575 -113310869 - MIR SINE MIR 0 262 69 1615 197 7 7 chr9 28960576 28960870 -113310574 + AluJo SINE Alu 1 294 -18 355 279 141 50 chr9 28960972 28961355 -113310089 + MLT1K LTR MaLR 165 582 -6 348 301 86 53 chr9 28961408 28961617 -113309827 + MIR SINE MIR 47 262 0 210 191 0 0 chr9 28962084 28962131 -113309313 + (TG)n Simple_repeat Simple_repeat 1 47 0 521 340 48 10 chr9 28962439 28962648 -113308796 + L2 LINE L2 2869 3085 -187 2272 101 3 16 chr9 28963255 28963563 -113307881 + AluSp SINE Alu 1 304 -9 28 29 0 0 chr9 28963647 28963682 -113307762 + AT_rich Low_complexity Low_complexity 1 35 0 477 243 29 6 chr9 28963682 28963855 -113307589 + (TA)n Simple_repeat Simple_repeat 2 178 0 416 291 156 30 chr9 28964338 28964633 -113306811 - L2 LINE L2 0 3272 2941 2431 91 0 0 chr9 28964987 28965296 -113306148 + AluY SINE Alu 1 309 -2 181 327 0 0 chr9 28965734 28965786 -113305658 - MIR3 SINE MIR -6 202 151 314 204 5 0 chr9 28965900 28965976 -113305468 - MIR3 SINE MIR -52 156 79 1905 149 13 0 chr9 28965990 28966291 -113305153 - AluSx SINE Alu -6 306 2 405 247 232 58 chr9 28966393 28966842 -113304602 - MLT1H LTR MaLR 0 549 23 333 262 8 74 chr9 28966898 28967020 -113304424 + MIR SINE MIR 127 240 -22 576 304 157 9 chr9 28967758 28967975 -113303469 + MIR SINE MIR 14 262 0 267 280 0 43 chr9 28968097 28968190 -113303254 - L2 LINE L2 0 3313 3225 1920 228 110 6 chr9 28968280 28968790 -113302654 + MER82 DNA MER2_type 91 653 0 9332 65 6 2 chr9 28969192 28971215 -113300229 - L1PA7 LINE L1 -1 6153 4130 2292 90 3 0 chr9 28972192 28972482 -113298962 + AluSc SINE Alu 1 291 -18 23 33 0 0 chr9 28973591 28973621 -113297823 + AT_rich Low_complexity Low_complexity 1 30 0 2233 202 93 48 chr9 28973805 28974172 -113297272 - MER67B LTR ERV1 0 661 253 2234 146 67 15 chr9 28974172 28974576 -113296868 + MSTB LTR MaLR 2 426 0 2233 202 93 48 chr9 28974576 28974828 -113296616 - MER67B LTR ERV1 -408 253 14 551 105 23 0 chr9 28974830 28974916 -113296528 - MER67A LTR ERV1 -455 88 1 726 142 213 64 chr9 28975134 28975346 -113296098 - MER33 DNA MER1_type -2261 324 58 1837 155 0 7 chr9 28975346 28975658 -113295786 - AluJb SINE Alu 0 310 1 726 142 213 64 chr9 28975658 28975726 -113295718 - MER33 DNA MER1_type -2527 58 1 1887 27 0 0 chr9 28975968 28976188 -113295256 + L1PA5 LINE L1 5926 6145 -9 1212 189 12 24 chr9 28976265 28976519 -113294925 + MER46C DNA MER2_type 87 337 -1 2681 148 45 10 chr9 28976715 28977223 -113294221 - L1MB2 LINE L1 -3 6168 5643 2235 106 7 0 chr9 28977527 28977830 -113293614 + AluSx SINE Alu 1 305 -7 2313 43 7 4 chr9 28978156 28978462 -113292982 - AluY SINE Alu 0 307 1 225 0 0 0 chr9 28978462 28978487 -113292957 + (T)n Simple_repeat Simple_repeat 1 25 0 595 205 54 43 chr9 28978501 28978686 -113292758 + MER106A DNA MER1_type 50 236 0 22 0 0 0 chr9 28978724 28978746 -113292698 + AT_rich Low_complexity Low_complexity 1 22 0 213 240 0 0 chr9 28979269 28979319 -113292125 + (TA)n Simple_repeat Simple_repeat 1 50 0 426 376 127 19 chr9 28979499 28979861 -113291583 + L2 LINE L2 2872 3272 0 2906 212 41 2 chr9 28979876 28980490 -113290954 - MER82 DNA MER2_type -6 647 10 438 20 0 0 chr9 28982003 28982054 -113289390 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 575 246 37 55 chr9 28982068 28982393 -113289051 - L1ME4a LINE L1 -155 5966 5648 476 269 34 0 chr9 28982469 28982588 -113288856 + L2 LINE L2 3150 3272 0 2499 57 0 3 chr9 28982723 28983020 -113288424 + AluY SINE Alu 1 296 -15 244 250 76 21 chr9 28983085 28983229 -113288215 - L1ME4a LINE L1 -96 6025 5874 1798 188 3 3 chr9 28983238 28983536 -113287908 - AluJo SINE Alu -14 298 1 2270 100 0 7 chr9 28983536 28983835 -113287609 - AluSq SINE Alu -16 297 1 32 26 0 0 chr9 28985493 28985532 -113285912 + AT_rich Low_complexity Low_complexity 1 39 0 22 56 0 0 chr9 28985562 28985598 -113285846 + AT_rich Low_complexity Low_complexity 1 36 0 2347 86 0 13 chr9 28985823 28986138 -113285306 + AluY SINE Alu 1 311 0 225 0 0 0 chr9 28986291 28986316 -113285128 + (TG)n Simple_repeat Simple_repeat 1 25 0 262 402 31 0 chr9 28986389 28986486 -113284958 + MIR SINE MIR 3 102 -160 292 172 35 0 chr9 28986510 28986568 -113284876 - MER92B LTR ERV1 -576 60 1 663 160 56 8 chr9 28986596 28986721 -113284723 - FLAM_C SINE Alu -2 131 1 262 162 27 0 chr9 28986790 28986864 -113284580 + (TA)n Simple_repeat Simple_repeat 1 76 0 307 276 124 7 chr9 28988454 28988599 -113282845 - L1ME4a LINE L1 -169 5952 5791 410 304 95 12 chr9 28988641 28988809 -113282635 + MIR SINE MIR 5 186 -76 2480 52 0 0 chr9 28989308 28989598 -113281846 + AluY SINE Alu 1 290 -21 2197 113 0 7 chr9 28991064 28991374 -113280070 + AluSg SINE Alu 1 308 -2 5056 102 23 11 chr9 28991374 28992195 -113279249 - L1MA3 LINE L1 -180 6125 5295 3193 163 51 2 chr9 28992196 28992767 -113278677 - Tigger7 DNA MER2_type -134 599 1 220 322 39 54 chr9 28992801 28992931 -113278513 + MIR SINE MIR 50 176 -32 1161 122 35 44 chr9 28993051 28993280 -113278164 - L1 LINE L1 -1902 4244 4018 302 125 11 34 chr9 28993352 28993440 -113278004 + (TA)n Simple_repeat Simple_repeat 2 87 0 180 0 0 0 chr9 28993724 28993744 -113277700 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 2252 103 0 3 chr9 28993800 28994102 -113277342 + AluSc SINE Alu 1 301 -8 2063 128 17 3 chr9 28994425 28994715 -113276729 - AluSx SINE Alu -18 294 1 883 65 8 0 chr9 28994738 28994861 -113276583 + THE1B-int LTR MaLR 1457 1580 0 1922 120 49 55 chr9 28994861 28995154 -113276290 + THE1B LTR MaLR 1 293 -71 2512 68 0 0 chr9 28995154 28995463 -113275981 - AluY SINE Alu -2 309 1 1922 120 49 55 chr9 28995463 28995535 -113275909 + THE1B LTR MaLR 293 364 0 12457 144 16 7 chr9 28995535 28997655 -113273789 - L1PA12 LINE L1 -4266 3318 900 2286 131 47 33 chr9 28997655 28998014 -113273430 + THE1B LTR MaLR 1 364 0 12457 144 16 7 chr9 28998014 28998921 -113272523 - L1PA12 LINE L1 -6684 900 3 570 241 23 1 chr9 28998926 28999068 -113272376 - MER33 DNA MER1_type -251 73 1 2216 174 42 38 chr9 28999152 28999538 -113271906 + MSTA LTR MaLR 1 391 -37 2048 129 10 0 chr9 28999538 28999833 -113271611 - AluSg SINE Alu -12 298 1 2216 174 42 38 chr9 28999833 28999872 -113271572 + MSTA LTR MaLR 391 428 0 189 0 0 0 chr9 29000127 29000148 -113271296 + (TTTA)n Simple_repeat Simple_repeat 4 24 0 2398 60 3 0 chr9 29000151 29000435 -113271009 - AluY SINE Alu -26 285 1 273 98 0 0 chr9 29000555 29000596 -113270848 + (TA)n Simple_repeat Simple_repeat 2 42 0 527 286 12 18 chr9 29001348 29001519 -113269925 - MARNA DNA Mariner -348 238 69 265 224 0 0 chr9 29001866 29001915 -113269529 - MLT1D LTR MaLR -425 80 32 2451 179 85 0 chr9 29001921 29002368 -113269076 + MLT1D LTR MaLR 21 505 0 2199 122 3 0 chr9 29002619 29002923 -113268521 + AluSx SINE Alu 1 305 -7 206 268 0 70 chr9 29002926 29002997 -113268447 - L2 LINE L2 -75 3238 3173 391 336 148 0 chr9 29004131 29004348 -113267096 + L2 LINE L2 2455 2703 -611 466 296 159 11 chr9 29004628 29005000 -113266444 - L1ME3A LINE L1 -214 5956 5530 296 205 145 6 chr9 29005034 29005212 -113266232 - L1ME3A LINE L1 -800 5442 5191 397 89 0 0 chr9 29005227 29005283 -113266161 + MADE1 DNA Mariner 25 80 0 2432 66 0 10 chr9 29005382 29005683 -113265761 + AluY SINE Alu 1 298 -13 331 250 0 42 chr9 29005757 29005829 -113265615 + L2 LINE L2 3245 3313 0 571 304 65 20 chr9 29006112 29006359 -113265085 + MIR SINE MIR 5 262 0 2405 60 0 3 chr9 29006972 29007286 -113264158 - AluY SINE Alu 0 313 1 561 286 94 4 chr9 29007296 29007530 -113263914 - L1ME LINE L1 -301 5820 5566 2302 91 0 0 chr9 29008395 29008691 -113262753 + AluSg SINE Alu 1 296 -14 21 0 0 0 chr9 29009143 29009164 -113262280 + AT_rich Low_complexity Low_complexity 1 21 0 2021 125 0 3 chr9 29009885 29010172 -113261272 + AluJb SINE Alu 1 286 -26 201 39 0 0 chr9 29010176 29010202 -113261242 + (CAA)n Simple_repeat Simple_repeat 2 27 0 185 263 118 26 chr9 29010279 29010355 -113261089 + MIR SINE MIR 20 102 -160 2386 82 0 3 chr9 29010790 29011083 -113260361 - AluY SINE Alu -19 292 1 234 269 184 14 chr9 29011169 29011310 -113260134 + MIR SINE MIR 66 230 -32 2260 169 71 22 chr9 29011578 29012040 -113259404 - L1MC3 LINE L1 -1519 6266 5782 967 250 130 32 chr9 29012056 29012464 -113258980 - HAL1 LINE L1 -1476 1031 584 3193 145 38 99 chr9 29012554 29012623 -113258821 - L1MB8 LINE L1 0 6178 6106 661 215 16 0 chr9 29012623 29012744 -113258700 + FLAM_A SINE Alu 1 123 -10 3193 145 38 99 chr9 29012744 29013474 -113257970 - L1MB8 LINE L1 -72 6106 5428 2514 57 0 0 chr9 29013495 29013791 -113257653 + AluY SINE Alu 1 296 -15 305 254 59 41 chr9 29013831 29014000 -113257444 - L1ME4a LINE L1 -76 6045 5874 1838 178 3 3 chr9 29014009 29014307 -113257137 - AluJo SINE Alu -14 298 1 2271 100 0 7 chr9 29014307 29014606 -113256838 - AluSq SINE Alu -16 297 1 32 26 0 0 chr9 29016265 29016304 -113255140 + AT_rich Low_complexity Low_complexity 1 39 0 22 56 0 0 chr9 29016334 29016370 -113255074 + AT_rich Low_complexity Low_complexity 1 36 0 2354 86 0 13 chr9 29016595 29016910 -113254534 + AluY SINE Alu 1 311 0 207 0 0 0 chr9 29017063 29017086 -113254358 + (TG)n Simple_repeat Simple_repeat 1 23 0 257 402 31 0 chr9 29017159 29017256 -113254188 + MIR SINE MIR 3 102 -160 318 172 35 0 chr9 29017280 29017338 -113254106 - MER92B LTR ERV1 -576 60 1 716 160 56 8 chr9 29017366 29017491 -113253953 - FLAM_C SINE Alu -2 131 1 280 158 26 0 chr9 29017560 29017636 -113253808 + (TA)n Simple_repeat Simple_repeat 1 78 0 869 150 0 7 chr9 29019451 29019598 -113251846 + AluSg/x SINE Alu 165 310 -2 192 333 0 15 chr9 29020195 29020261 -113251183 - MER5A DNA MER1_type -14 175 111 263 291 36 9 chr9 29020456 29020566 -113250878 + MIR SINE MIR 129 241 -21 248 320 176 18 chr9 29020970 29021248 -113250196 - L2 LINE L2 -811 2503 2182 285 313 52 15 chr9 29021578 29021712 -113249732 + MIR SINE MIR 99 237 -25 546 272 189 0 chr9 29021959 29022150 -113249294 - LTR33 LTR ERVL -168 353 127 226 293 10 40 chr9 29022645 29022744 -113248700 - L2 LINE L2 -223 3049 2954 2413 81 0 0 chr9 29022787 29023082 -113248362 + AluSc SINE Alu 1 295 -14 197 373 25 17 chr9 29023454 29023572 -113247872 + L3 LINE CR1 1443 1561 -16 197 232 72 43 chr9 29024308 29024377 -113247067 - MIR SINE MIR -76 186 116 197 300 311 0 chr9 29024535 29024625 -113246819 - L2 LINE L2 -40 3232 3115 24 32 0 0 chr9 29024660 29024691 -113246753 + AT_rich Low_complexity Low_complexity 1 31 0 370 247 99 0 chr9 29024898 29025037 -113246407 - L1ME LINE L1 -356 5806 5640 3266 211 72 50 chr9 29025060 29025506 -113245938 - L1ME1 LINE L1 -6 6160 5725 2555 42 0 23 chr9 29025506 29025814 -113245630 - AluY SINE Alu -10 301 1 3266 211 72 50 chr9 29025814 29026644 -113244800 - L1ME1 LINE L1 -441 5725 4863 742 300 40 4 chr9 29026658 29026908 -113244536 + MIR SINE MIR 3 261 -1 275 286 120 31 chr9 29026926 29027118 -113244326 - L1ME LINE L1 -2219 5589 5381 306 186 85 76 chr9 29027145 29027263 -113244181 - MLT1H LTR MaLR -12 530 412 * 674 228 13 74 chr9 29027253 29027518 -113243926 - MLT1H LTR MaLR -256 293 5 316 246 93 51 chr9 29027759 29027877 -113243567 + L2 LINE L2 3191 3313 0 376 292 11 0 chr9 29027911 29028000 -113243444 - L2 LINE L2 0 3313 3224 281 306 116 35 chr9 29028062 29028235 -113243209 + MIR SINE MIR 49 235 -27 1726 163 0 17 chr9 29029110 29029404 -113242040 + AluJb SINE Alu 1 289 -23 188 264 293 9 chr9 29030007 29030219 -113241225 + L3b LINE CR1 1136 1407 -176 375 302 101 16 chr9 29030465 29030594 -113240850 + L2 LINE L2 3133 3272 0 21 0 0 0 chr9 29031388 29031409 -113240035 + AT_rich Low_complexity Low_complexity 1 21 0 2228 85 3 10 chr9 29031953 29032248 -113239196 + AluSg SINE Alu 1 293 -17 1199 68 0 0 chr9 29032952 29033099 -113238345 - L1PA7 LINE L1 0 6154 6008 584 97 0 0 chr9 29033099 29033171 -113238273 - AluS SINE Alu -240 73 2 209 188 62 0 chr9 29034398 29034446 -113236998 + L2 LINE L2 3259 3309 -4 2045 108 56 3 chr9 29034600 29034888 -113236556 - AluSq SINE Alu -10 303 1 211 111 0 28 chr9 29034977 29035013 -113236431 + (TCCA)n Simple_repeat Simple_repeat 1 35 0 587 281 72 0 chr9 29035224 29035391 -113236053 - L2 LINE L2 -214 3058 2880 453 248 70 45 chr9 29035395 29035552 -113235892 + MIR SINE MIR 53 213 -49 183 350 70 10 chr9 29035975 29036075 -113235369 - MIR SINE MIR 0 262 157 2167 123 0 13 chr9 29037436 29037744 -113233700 - AluSc SINE Alu -5 304 1 318 251 146 23 chr9 29037770 29037941 -113233503 - MLT1H LTR MaLR -13 536 345 481 269 158 12 chr9 29038091 29038262 -113233182 - MLT1H LTR MaLR -339 210 15 1735 172 6 13 chr9 29038797 29039111 -113232333 - AluJo SINE Alu 0 312 1 417 202 142 22 chr9 29039210 29039374 -113232070 - MER5A DNA MER1_type 0 189 4 552 283 57 11 chr9 29040023 29040200 -113231244 + MIR SINE MIR 21 205 -57 274 351 0 0 chr9 29040291 29040368 -113231076 - MIR SINE MIR -179 83 7 267 300 102 37 chr9 29040479 29040708 -113230736 + MIR SINE MIR 15 261 -1 2238 109 0 0 chr9 29041497 29041799 -113229645 - AluSg SINE Alu -8 302 1 265 348 101 18 chr9 29041837 29042064 -113229380 - MIR SINE MIR -14 248 3 224 362 105 34 chr9 29042070 29042421 -113229023 - L2 LINE L2 -80 3192 2817 220 315 77 46 chr9 29042424 29042554 -113228890 + MIR SINE MIR 47 180 -82 291 269 97 48 chr9 29042736 29042881 -113228563 + MIR3 SINE MIR 54 205 -3 1002 244 8 21 chr9 29042886 29043041 -113228403 + MIR SINE MIR 32 185 -77 1323 191 50 28 chr9 29043041 29043107 -113228337 - AluJo SINE Alu -22 290 227 2405 88 0 0 chr9 29043107 29043404 -113228040 - AluY SINE Alu -14 297 1 1323 191 50 28 chr9 29043404 29043619 -113227825 - AluJo SINE Alu -85 227 3 1002 244 8 21 chr9 29043619 29043697 -113227747 + MIR SINE MIR 185 262 0 418 287 144 17 chr9 29044370 29044551 -113226893 - MIR SINE MIR -36 226 23 504 251 159 87 chr9 29044961 29045534 -113225910 - L1M4 LINE L1 -3316 2830 2217 2048 131 0 0 chr9 29046008 29046313 -113225131 - AluSx SINE Alu 0 305 1 1339 175 35 0 chr9 29046751 29046979 -113224465 + MER46A DNA MER2_type 1 236 0 306 219 14 27 chr9 29048462 29048535 -113222909 - LTR67 LTR ERVL -7 550 479 2425 120 3 32 chr9 29048719 29049093 -113222351 - THE1C LTR MaLR -12 363 1 1557 159 133 0 chr9 29049142 29049406 -113222038 + AluJb SINE Alu 1 299 -13 246 264 110 0 chr9 29050140 29050231 -113221213 - L2 LINE L2 -3 3310 3210 693 173 30 30 chr9 29050871 29051004 -113220440 - MER5A DNA MER1_type -54 135 3 683 288 162 45 chr9 29051005 29051363 -113220081 + L2 LINE L2 2870 3269 -3 912 238 16 5 chr9 29051633 29051818 -113219626 - MER91B DNA MER1_type -3 187 1 491 245 0 0 chr9 29052389 29052487 -113218957 - MER5A DNA MER1_type -83 106 9 240 59 0 0 chr9 29052509 29052543 -113218901 + (T)n Simple_repeat Simple_repeat 1 34 0 1185 137 0 0 chr9 29052566 29052727 -113218717 + FRAM SINE Alu 1 158 -18 1296 151 169 4 chr9 29053127 29053405 -113218039 - MER33 DNA MER1_type 0 324 1 21 0 0 0 chr9 29053612 29053633 -113217811 + AT_rich Low_complexity Low_complexity 1 21 0 7997 34 0 0 chr9 29053753 29054751 -113216693 - L1PA3 LINE L1 0 6155 5177 6065 147 34 13 chr9 29055320 29056254 -113215190 - L1MA9 LINE L1 0 6312 5321 2318 105 3 0 chr9 29056254 29056559 -113214885 + AluSp SINE Alu 1 306 -7 6065 147 34 13 chr9 29056559 29057330 -113214114 - L1MA9 LINE L1 -991 5321 4568 3036 238 96 27 chr9 29057674 29058862 -113212582 - L1ME LINE L1 -4816 1264 3 274 293 53 0 chr9 29059606 29059681 -113211763 + MER58A DNA MER1_type 1 79 -28 716 244 17 0 chr9 29059687 29059867 -113211577 - L1MB7 LINE L1 -36 6148 5966 1418 132 22 28 chr9 29059868 29060217 -113211227 - Tigger2 DNA MER2_type -10 2708 3 651 203 33 33 chr9 29060219 29060372 -113211072 - L1MB7 LINE L1 -212 5966 5814 509 235 167 19 chr9 29060377 29060539 -113210905 + MER58A DNA MER1_type 39 224 0 279 297 11 30 chr9 29061977 29062159 -113209285 + MIR SINE MIR 3 227 -35 1681 172 17 27 chr9 29063542 29063838 -113207606 + AluJo SINE Alu 3 295 -17 401 301 79 30 chr9 29064576 29064779 -113206665 + MIR SINE MIR 18 230 -32 1082 142 82 0 chr9 29065184 29065367 -113206077 + MER2 DNA MER2_type 147 344 -1 181 302 0 19 chr9 29065408 29065461 -113205983 - MIR3 SINE MIR -153 55 4 2502 211 47 32 chr9 29066144 29066387 -113205057 + L1ME3 LINE L1 5551 5789 -373 2326 147 15 66 chr9 29066387 29066796 -113204648 - MLT1B LTR MaLR 0 390 3 2502 211 47 32 chr9 29066796 29067153 -113204291 + L1ME3 LINE L1 5789 6160 -2 829 210 67 82 chr9 29067480 29067809 -113203635 - L2 LINE L2 -2 3311 2988 215 280 40 0 chr9 29068012 29068062 -113203382 - L2 LINE L2 -73 3199 3148 1147 207 9 4 chr9 29068064 29068291 -113203153 - MER106A DNA MER1_type -2 234 7 1340 223 49 24 chr9 29068301 29068629 -113202815 + MLT1D LTR MaLR 117 452 -53 488 338 119 15 chr9 29068859 29069202 -113202242 - L2 LINE L2 -337 2977 2599 378 237 53 41 chr9 29071858 29072027 -113199417 - HAL1 LINE L1 -7 2500 2330 846 170 44 66 chr9 29072027 29072209 -113199235 - MER5A DNA MER1_type 0 189 12 203 287 58 11 chr9 29072468 29072555 -113198889 - MIR SINE MIR -73 189 99 1533 169 24 30 chr9 29072596 29072891 -113198553 - AluJo SINE Alu -19 293 1 789 249 34 38 chr9 29074116 29074353 -113197091 - MER106A DNA MER1_type 0 236 1 261 285 154 8 chr9 29074524 29074654 -113196790 - MIR SINE MIR -46 216 68 458 217 35 9 chr9 29075056 29075171 -113196273 - L1ME LINE L1 -322 5799 5682 1008 126 73 138 chr9 29075290 29075551 -113195893 - MSTA LTR MaLR 0 428 185 23 68 0 0 chr9 29075551 29075595 -113195849 + AT_rich Low_complexity Low_complexity 1 44 0 1363 32 0 0 chr9 29075647 29075804 -113195640 - L1PA4 LINE L1 0 6155 5999 429 69 0 0 chr9 29075804 29075862 -113195582 + L1PA4 LINE L1 5929 5986 -169 1314 131 5 5 chr9 29075862 29076060 -113195384 - MSTA LTR MaLR -230 198 1 458 143 14 0 chr9 29077073 29077143 -113194301 + 5S rRNA rRNA 1 71 -50 246 268 35 3 chr9 29077330 29077456 -113193988 - L1ME4a LINE L1 -1 8041 5966 1847 135 14 17 chr9 29077597 29077886 -113193558 - AluJo SINE Alu -24 288 1 613 280 110 74 chr9 29077976 29079018 -113192426 - L1ME4a LINE L1 -344 5818 4771 523 246 66 55 chr9 29079593 29079776 -113191668 - MIR SINE MIR -73 189 5 282 278 0 67 chr9 29079888 29079978 -113191466 - MER5A DNA MER1_type -1 188 105 231 227 0 0 chr9 29080628 29080685 -113190759 + MIR SINE MIR 97 152 -62 598 289 178 0 chr9 29081103 29081300 -113190144 + MIR SINE MIR 19 250 -12 225 274 32 0 chr9 29081462 29081524 -113189920 - MER117 DNA MER1_type -133 64 1 329 257 176 22 chr9 29082882 29083104 -113188340 - HAL1b LINE L1 -31 1317 1062 210 283 0 0 chr9 29083160 29083206 -113188238 + polypyrimidine Low_complexity Low_complexity 3 48 0 237 303 0 0 chr9 29083310 29083376 -113188068 - MIR SINE MIR -123 139 74 459 182 107 41 chr9 29084028 29084149 -113187295 + MER94 DNA DNA 6 134 0 371 247 0 0 chr9 29085088 29085161 -113186283 - MER117 DNA MER1_type 0 197 125 995 199 33 0 chr9 29085883 29086064 -113185380 - MER5A DNA MER1_type 0 189 3 276 300 27 73 chr9 29086093 29086243 -113185201 + MER5A DNA MER1_type 47 189 0 1040 153 148 0 chr9 29087594 29087783 -113183661 + MER20 DNA MER1_type 2 218 -1 254 29 29 0 chr9 29089058 29089093 -113182351 + (CA)n Simple_repeat Simple_repeat 2 37 0 2213 78 0 20 chr9 29089636 29089929 -113181515 + AluSc SINE Alu 1 287 -22 330 272 0 22 chr9 29089948 29090040 -113181404 + L1MC4 LINE L1 6614 6703 -1339 33 25 0 0 chr9 29090067 29090107 -113181337 + AT_rich Low_complexity Low_complexity 1 40 0 1690 158 0 76 chr9 29090232 29090561 -113180883 - AluJo SINE Alu -8 304 1 21 0 0 0 chr9 29090720 29090741 -113180703 + AT_rich Low_complexity Low_complexity 1 21 0 349 283 19 82 chr9 29094232 29094391 -113177053 - MER5B DNA MER1_type -4 174 26 447 356 63 48 chr9 29094484 29095151 -113176293 - L2 LINE L2 -33 3239 2555 184 358 45 50 chr9 29095942 29096121 -113175323 + L2 LINE L2 2936 3113 -159 209 270 40 14 chr9 29097001 29097075 -113174369 - MIR3 SINE MIR -43 165 90 383 275 38 23 chr9 29097167 29097298 -113174146 - MIR SINE MIR -96 166 34 267 260 0 14 chr9 29097894 29097967 -113173477 + L1ME LINE L1 5801 5872 -249 2516 77 0 27 chr9 29098060 29098398 -113173046 + L1PA8 LINE L1 5775 6103 -69 21158 96 32 17 chr9 29099274 29105480 -113165964 + L1PA7 LINE L1 4 6466 -3 305 301 88 0 chr9 29105639 29105752 -113165692 + MER94 DNA DNA 1 123 -11 245 379 30 15 chr9 29105884 29106016 -113165428 - MER5A DNA MER1_type 0 189 56 234 309 122 16 chr9 29105927 29106050 -113165394 + MER5A DNA MER1_type 54 189 0 * 1981 165 40 3 chr9 29106167 29106519 -113164925 - MLT1A1 LTR MaLR 0 365 1 500 248 78 0 chr9 29107277 29107406 -113164038 - MIR3 SINE MIR -5 203 65 22 0 0 0 chr9 29108225 29108247 -113163197 + AT_rich Low_complexity Low_complexity 1 22 0 355 234 128 32 chr9 29109191 29109283 -113162161 - MER6B DNA MER2_type -659 206 124 6540 61 24 14 chr9 29109283 29110822 -113160622 + L1PA7 LINE L1 4586 6143 -11 355 234 128 32 chr9 29110822 29110917 -113160527 - MER6B DNA MER2_type -741 124 1 320 342 21 43 chr9 29111109 29111296 -113160148 + L1MA8 LINE L1 2 184 -6984 3136 234 97 24 chr9 29112176 29114234 -113157210 + L1MA8 LINE L1 1619 3540 -3627 9772 154 36 12 chr9 29114235 29117134 -113154310 + L1MA8 LINE L1 4338 7308 -4 1691 170 22 0 chr9 29117144 29117414 -113154030 + AluJo SINE Alu 1 276 -36 429 20 0 0 chr9 29117420 29117470 -113153974 + (CA)n Simple_repeat Simple_repeat 1 50 0 207 191 0 0 chr9 29117470 29117533 -113153911 + (TA)n Simple_repeat Simple_repeat 2 64 0 41496 45 1 1 chr9 29118117 29124267 -113147177 + L1PA4 LINE L1 1 6149 -6 597 340 52 5 chr9 29126392 29126604 -113144840 - MIR SINE MIR -31 231 10 852 209 94 0 chr9 29127885 29128076 -113143368 - MER3 DNA MER1_type 0 209 1 734 224 88 19 chr9 29128085 29128290 -113143154 - MER58A DNA MER1_type -2 222 4 524 256 65 65 chr9 29129253 29129499 -113141945 + MIR SINE MIR 7 252 -10 216 0 0 0 chr9 29129758 29129782 -113141662 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 21609 116 29 95 chr9 29129926 29134560 -113136884 + L1PA7 LINE L1 3 4329 -1817 706 12 0 0 chr9 29134560 29134646 -113136798 - AluSg/x SINE Alu -5 304 219 7470 84 23 0 chr9 29134646 29136450 -113134994 + L1PA7 LINE L1 4328 6154 0 223 273 178 45 chr9 29136556 29136755 -113134689 - MIR SINE MIR -14 248 16 231 304 51 0 chr9 29136952 29137031 -113134413 + MIR SINE MIR 59 141 -121 580 307 155 32 chr9 29138705 29139748 -113131696 - L2 LINE L2 -1 3312 1851 240 280 215 26 chr9 29139935 29140274 -113131170 - L2 LINE L2 -1542 1772 1370 226 279 27 45 chr9 29140370 29140481 -113130963 - L2 LINE L2 -2384 930 822 566 279 46 63 chr9 29141237 29141474 -113129970 - MIR SINE MIR -28 234 2 762 258 57 0 chr9 29141807 29142001 -113129443 + MIR SINE MIR 11 215 -47 240 154 0 0 chr9 29142116 29142168 -113129276 + (CATATA)n Simple_repeat Simple_repeat 3 54 0 442 287 102 0 chr9 29142666 29142823 -113128621 - MIR SINE MIR -74 188 16 296 272 192 48 chr9 29143207 29143332 -113128112 + MER5A DNA MER1_type 47 189 0 2883 73 13 0 chr9 29143457 29143840 -113127604 - L1PA8 LINE L1 -4 6168 5781 2316 87 7 0 chr9 29144021 29144309 -113127135 - AluSc SINE Alu -19 290 1 1948 118 40 0 chr9 29144847 29145150 -113126294 + AluSx SINE Alu 1 314 0 1463 199 52 3 chr9 29145504 29145791 -113125653 + AluJb SINE Alu 1 301 -11 253 108 0 0 chr9 29146170 29146207 -113125237 - AluSq SINE Alu -150 153 117 649 231 28 77 chr9 29146512 29146656 -113124788 + MER106A DNA MER1_type 1 130 -106 1095 58 0 0 chr9 29146656 29146794 -113124650 - L1PA3 LINE L1 0 6155 6018 649 231 28 77 chr9 29146794 29146896 -113124548 + MER106A DNA MER1_type 130 235 -1 2193 120 0 0 chr9 29147453 29147752 -113123692 + AluSx SINE Alu 3 301 -11 352 258 83 50 chr9 29147858 29147978 -113123466 - MIR SINE MIR -59 203 80 25 0 0 0 chr9 29148123 29148148 -113123296 + AT_rich Low_complexity Low_complexity 1 25 0 332 268 122 30 chr9 29148148 29148312 -113123132 - MIR SINE MIR -13 249 71 832 303 122 43 chr9 29148533 29149213 -113122231 + L1M4 LINE L1 16 749 -5793 442 144 19 19 chr9 29149212 29149316 -113122128 + L1ME LINE L1 3597 3700 -2446 * 792 218 5 0 chr9 29149342 29149539 -113121905 + L1MB4 LINE L1 5761 5958 -222 1235 121 12 0 chr9 29149541 29149714 -113121730 + AluSc SINE Alu 135 309 0 1233 160 27 0 chr9 29149716 29149941 -113121503 + L1MB4 LINE L1 5944 6174 -6 1185 251 47 12 chr9 29149946 29150368 -113121076 + L1ME LINE L1 3673 4109 -2037 1926 121 19 56 chr9 29152347 29152669 -113118775 + AluSx SINE Alu 1 310 -2 441 208 113 24 chr9 29153312 29153480 -113117964 + HAL1b LINE L1 278 460 -888 380 245 85 89 chr9 29153475 29153757 -113117687 + L1ME LINE L1 5377 5657 -464 * 305 161 0 0 chr9 29153815 29153871 -113117573 - AluJb SINE Alu -127 175 120 441 236 64 0 chr9 29154005 29154115 -113117329 - MIR SINE MIR -90 172 56 2411 91 0 0 chr9 29154175 29154482 -113116962 - AluSc SINE Alu -2 307 1 2335 225 73 13 chr9 29154618 29155232 -113116212 + MER82 DNA MER2_type 2 652 -1 2098 111 17 0 chr9 29155742 29156040 -113115404 + AluSx SINE Alu 1 303 -9 645 203 127 19 chr9 29159662 29159949 -113111495 + MER41B LTR ERV1 100 476 -159 829 244 99 23 chr9 29159965 29160310 -113111134 + MER66A LTR ERV1 98 468 -10 219 36 0 0 chr9 29160901 29160929 -113110515 + (CTA)n Simple_repeat Simple_repeat 2 29 0 297 295 188 13 chr9 29161727 29161876 -113109568 + MIR SINE MIR 85 259 -3 2167 113 10 10 chr9 29161990 29162292 -113109152 - AluSg SINE Alu -8 302 1 2518 74 0 0 chr9 29162609 29162918 -113108526 + AluSc SINE Alu 1 309 0 2510 78 0 0 chr9 29163881 29164189 -113107255 - AluSc SINE Alu -1 308 1 276 227 189 38 chr9 29165285 29165417 -113106027 - MIR SINE MIR -64 198 47 496 173 188 8 chr9 29166278 29166411 -113105033 + MIR SINE MIR 92 248 -14 2141 93 0 31 chr9 29166540 29166831 -113104613 - AluSx SINE Alu -8 304 23 189 229 0 0 chr9 29166891 29166926 -113104518 - L2 LINE L2 -1749 1565 1531 439 106 106 24 chr9 29167072 29167157 -113104287 + L1MC2 LINE L1 5514 5605 -2180 290 122 41 0 chr9 29167162 29167211 -113104233 - AluJ/FLAM SINE Alu -241 61 11 3743 135 56 7 chr9 29167222 29167918 -113103526 + L1MC2 LINE L1 5602 6331 -13 256 83 0 0 chr9 29168194 29168230 -113103214 - AluJo SINE Alu -14 288 253 1052 174 0 6 chr9 29168230 29168397 -113103047 - AluJo SINE Alu -146 166 1 3141 197 11 14 chr9 29168579 29169224 -113102220 + MER82 DNA MER2_type 1 643 -10 340 259 22 29 chr9 29169276 29169415 -113102029 + (CATA)n Simple_repeat Simple_repeat 2 139 0 187 51 0 51 chr9 29169816 29169855 -113101589 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 218 315 22 22 chr9 29169895 29169984 -113101460 - L2 LINE L2 -2 3311 3223 22 0 0 0 chr9 29173245 29173267 -113098177 + AT_rich Low_complexity Low_complexity 1 22 0 401 276 98 64 chr9 29174190 29174300 -113097144 + L1M4 LINE L1 4912 5017 -1129 2598 36 3 0 chr9 29174300 29174603 -113096841 + AluY SINE Alu 1 304 -7 401 276 98 64 chr9 29174603 29174756 -113096688 + L1M4 LINE L1 5017 5184 -962 1939 136 0 24 chr9 29174767 29175061 -113096383 + AluJb SINE Alu 1 287 -25 269 209 67 19 chr9 29175149 29175254 -113096190 + L1M LINE L1 5255 5364 -2444 1958 158 64 13 chr9 29176170 29176562 -113094882 - LTR3 LTR ERVK -16 416 5 1686 132 147 0 chr9 29176683 29176955 -113094489 + AluSx SINE Alu 1 312 0 267 143 20 51 chr9 29177096 29177194 -113094250 + (TATAA)n Simple_repeat Simple_repeat 5 99 0 5017 103 13 4 chr9 29177207 29177985 -113093459 - L1PB3 LINE L1 -2 6152 5368 27 62 0 0 chr9 29177991 29178039 -113093405 + AT_rich Low_complexity Low_complexity 1 48 0 268 250 16 16 chr9 29178855 29178919 -113092525 + L2 LINE L2 3191 3254 -18 842 172 0 8 chr9 29179176 29179310 -113092134 + FLAM_C SINE Alu 1 133 0 2497 165 11 15 chr9 29179373 29179834 -113091610 + MLT1C LTR MaLR 1 459 -8 388 304 22 22 chr9 29180174 29180309 -113091135 + MIR SINE MIR 18 152 -110 2278 110 0 0 chr9 29180536 29180835 -113090609 - AluSx SINE Alu -9 303 5 679 225 0 0 chr9 29181080 29181222 -113090222 + MLT1H1 LTR MaLR 414 555 0 2226 56 3 28 chr9 29181444 29181775 -113089669 + AluY SINE Alu 1 324 0 2045 142 13 0 chr9 29182587 29182889 -113088555 - AluSx SINE Alu -6 306 1 22 35 0 0 chr9 29183344 29183373 -113088071 + AT_rich Low_complexity Low_complexity 1 29 0 352 298 7 43 chr9 29183956 29184097 -113087347 + MIR SINE MIR 17 152 -110 487 319 80 48 chr9 29184228 29184704 -113086740 - LTR16C LTR ERVL 0 491 1 311 336 29 7 chr9 29185685 29185822 -113085622 - ERVL LTR ERVL -4415 581 442 296 217 43 0 chr9 29186100 29186169 -113085275 + LTR16C LTR ERVL 258 329 -162 2449 151 69 0 chr9 29186325 29186748 -113084696 + LTR47A LTR ERVL 1 452 0 508 309 61 64 chr9 29186968 29187327 -113084117 - HAL1 LINE L1 -6 2501 2144 837 259 67 4 chr9 29187580 29187819 -113083625 - MER76 LTR ERV -430 258 5 612 294 42 42 chr9 29187827 29188211 -113083233 - ERVL LTR ERVL -1910 3854 3471 1975 137 49 23 chr9 29188569 29188957 -113082487 + L1MA8 LINE L1 5889 6286 -5 1692 203 45 5 chr9 29189050 29189429 -113082015 + MER63B DNA MER1_type 43 436 0 325 261 61 9 chr9 29190166 29190281 -113081163 - MER103 DNA DNA -43 123 3 22 0 0 0 chr9 29190985 29191007 -113080437 + AT_rich Low_complexity Low_complexity 1 22 0 703 218 202 16 chr9 29191034 29191222 -113080222 + MIR SINE MIR 2 224 -38 201 327 0 0 chr9 29191372 29191427 -113080017 + L2 LINE L2 3199 3253 -19 618 282 94 14 chr9 29193110 29193323 -113078121 + MIR SINE MIR 17 246 -16 22 56 0 0 chr9 29193352 29193388 -113078056 + AT_rich Low_complexity Low_complexity 1 36 0 1175 246 137 19 chr9 29193446 29193868 -113077576 - L2 LINE L2 0 3313 2842 2358 79 3 3 chr9 29194816 29195121 -113076323 + AluY SINE Alu 1 305 -6 342 304 53 66 chr9 29195510 29195753 -113075691 - Charlie8 DNA MER1_type -2161 256 17 21 0 0 0 chr9 29195975 29195996 -113075448 + AT_rich Low_complexity Low_complexity 1 21 0 246 326 10 20 chr9 29196097 29196195 -113075249 - MIR SINE MIR -119 143 47 20547 99 10 45 chr9 29196439 29197553 -113073891 - L1PA7 LINE L1 0 6154 5002 2326 90 0 3 chr9 29197553 29197853 -113073591 - AluY SINE Alu -12 299 1 20547 99 10 45 chr9 29197853 29198670 -113072774 - L1PA7 LINE L1 -1152 5002 4158 2362 72 3 7 chr9 29198670 29198974 -113072470 - AluY SINE Alu 0 311 9 20547 99 10 45 chr9 29198974 29200881 -113070563 - L1PA7 LINE L1 -1996 4158 2185 2190 125 0 13 chr9 29200881 29201193 -113070251 - AluY SINE Alu -3 308 1 20547 99 10 45 chr9 29201193 29203812 -113067632 - L1PA7 LINE L1 -3969 2185 12 739 147 26 64 chr9 29205524 29205680 -113065764 - MER106A DNA MER1_type -40 196 47 1142 227 69 119 chr9 29206046 29206694 -113064750 + L1MC4 LINE L1 7324 7939 -103 615 221 14 14 chr9 29206697 29206837 -113064607 + FLAM_A SINE Alu 3 142 0 393 256 182 84 chr9 29209521 29209927 -113061517 + Charlie8 DNA MER1_type 41 486 -1931 1660 163 31 17 chr9 29210745 29211039 -113060405 - AluJb SINE Alu -14 298 1 282 329 84 7 chr9 29211473 29211628 -113059816 - MIR SINE MIR -90 172 6 190 255 39 20 chr9 29213428 29213479 -113057965 - MIR SINE MIR -74 134 83 2189 73 63 3 chr9 29213566 29213853 -113057591 - AluY SINE Alu -7 304 1 423 282 14 34 chr9 29213990 29214167 -113057277 - MIR3 SINE MIR -2 206 34 188 317 122 66 chr9 29214414 29214717 -113056727 + L2 LINE L2 2937 3256 -16 441 206 29 0 chr9 29214850 29214952 -113056492 - MIR SINE MIR -87 175 71 207 269 0 0 chr9 29217296 29217348 -113054096 + A-rich Low_complexity Low_complexity 4 55 0 495 285 149 0 chr9 29218266 29218480 -113052964 - MIR SINE MIR -12 250 5 362 241 102 0 chr9 29220465 29220573 -113050871 - MIR SINE MIR -93 169 51 1197 234 58 0 chr9 29220629 29220890 -113050554 + MER58 DNA MER1_type 1 276 -65 5043 70 12 20 chr9 29221174 29222244 -113049200 + SVA Other Other 1 1386 0 767 133 17 0 chr9 29222725 29222845 -113048599 + L1MB3 LINE L1 6062 6183 0 21 0 0 0 chr9 29224149 29224170 -113047274 + AT_rich Low_complexity Low_complexity 1 21 0 438 264 178 0 chr9 29224183 29224391 -113047053 + MER102a DNA MER1_type 77 321 -9 1790 197 14 32 chr9 29224714 29225084 -113046360 + MLT1A1 LTR MaLR 1 363 -2 584 289 67 0 chr9 29225096 29225290 -113046154 + MIR SINE MIR 28 234 -28 2301 113 0 3 chr9 29225461 29225762 -113045682 + AluSx SINE Alu 1 300 -12 2406 125 31 0 chr9 29226400 29226751 -113044693 + Tigger3(Golem) DNA MER2_type 2667 3028 -1 21 0 0 0 chr9 29227052 29227073 -113044371 + AT_rich Low_complexity Low_complexity 1 21 0 575 263 42 46 chr9 29227073 29227119 -113044325 + MLT1F1 LTR MaLR 10 55 -512 2287 119 0 0 chr9 29227119 29227431 -113044013 + AluSx SINE Alu 1 312 0 575 263 42 46 chr9 29227431 29227601 -113043843 + MLT1F1 LTR MaLR 55 225 -342 727 212 20 7 chr9 29228722 29228873 -113042571 + MER3 DNA MER1_type 1 153 -56 468 219 20 55 chr9 29228916 29229062 -113042382 - L1ME4a LINE L1 -3 6118 5978 304 105 18 18 chr9 29229097 29229154 -113042290 - L1ME4a LINE L1 -219 5902 5846 2414 89 0 0 chr9 29229649 29229951 -113041493 - AluSq SINE Alu -11 302 1 228 214 171 0 chr9 29230099 29230200 -113041244 - MIR3 SINE MIR -20 188 67 1877 126 37 4 chr9 29230869 29231140 -113040304 + AluJb SINE Alu 23 302 -10 182 161 0 0 chr9 29231483 29231514 -113039930 + MER5C DNA MER1_type 1 31 -293 600 223 51 25 chr9 29231557 29231714 -113039730 + MER103 DNA DNA 4 164 -2 462 218 204 20 chr9 29231915 29232062 -113039382 + MER5A DNA MER1_type 9 182 -7 274 295 11 21 chr9 29232082 29232177 -113039267 - MER5A DNA MER1_type -61 128 35 428 232 0 0 chr9 29233000 29233082 -113038362 + MER81 DNA DNA 1 82 -32 201 318 159 0 chr9 29233419 29233545 -113037899 - L2 LINE L2 -8 3264 3119 453 269 151 11 chr9 29233691 29233877 -113037567 - MIR SINE MIR -49 213 2 2102 64 0 11 chr9 29234296 29234563 -113036881 - AluY SINE Alu 0 311 48 216 0 0 0 chr9 29235870 29235894 -113035550 + (TA)n Simple_repeat Simple_repeat 2 25 0 2376 178 93 34 chr9 29236008 29236518 -113034926 + MER74A LTR ERVL 1 544 -14 1445 170 31 69 chr9 29236518 29236836 -113034608 + AluJo SINE Alu 1 306 -6 2376 178 93 34 chr9 29236836 29236852 -113034592 + MER74A LTR ERVL 544 558 0 245 259 241 0 chr9 29237305 29237413 -113034031 + L2 LINE L2 3180 3313 0 817 289 22 33 chr9 29238131 29238404 -113033040 - Charlie8 DNA MER1_type -2141 276 7 398 315 125 5 chr9 29238708 29238908 -113032536 + MIR SINE MIR 26 249 -13 2209 103 3 17 chr9 29238970 29239291 -113032153 + AluSx SINE Alu 1 312 0 252 338 103 28 chr9 29239886 29240031 -113031413 - MIR SINE MIR -79 183 28 611 275 97 14 chr9 29240319 29240559 -113030885 - MIR SINE MIR 0 262 4 2358 79 23 0 chr9 29242013 29242317 -113029127 - AluY SINE Alu 0 311 1 254 306 36 18 chr9 29242328 29242439 -113029005 - MIR SINE MIR -122 140 28 1851 156 0 11 chr9 29242511 29242794 -113028650 - AluJo SINE Alu -32 280 1 295 273 0 0 chr9 29243184 29243261 -113028183 - MER103 DNA DNA -49 117 41 356 303 17 80 chr9 29243279 29243517 -113027927 + MIR SINE MIR 6 228 -34 180 111 0 0 chr9 29244106 29244133 -113027311 + (T)n Simple_repeat Simple_repeat 1 27 0 229 281 9 53 chr9 29245750 29245864 -113025580 + L2 LINE L2 3133 3241 -31 272 362 35 9 chr9 29245933 29246049 -113025395 - MIR3 SINE MIR -80 128 10 270 303 53 30 chr9 29246238 29246370 -113025074 + MIR SINE MIR 58 192 -70 234 0 0 0 chr9 29246933 29246959 -113024485 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 429 141 0 0 chr9 29247069 29247140 -113024304 + (CA)n Simple_repeat Simple_repeat 2 72 0 261 374 80 20 chr9 29248123 29248372 -113023072 + L2 LINE L2 2552 2815 -499 289 305 0 73 chr9 29248450 29248601 -113022843 + L2 LINE L2 2915 3054 -218 495 224 0 22 chr9 29249177 29249311 -113022133 + L1MA9 LINE L1 6157 6287 -25 603 198 0 0 chr9 29249323 29249439 -113022005 - AluSg/x SINE Alu -1 308 193 252 241 0 0 chr9 29249960 29250018 -113021426 - AluS SINE Alu -242 58 1 2141 193 53 14 chr9 29250018 29250641 -113020803 - L1M4c LINE L1 -5678 706 24 256 329 60 27 chr9 29250972 29251121 -113020323 - MLT1I LTR MaLR -255 154 1 219 331 70 14 chr9 29251324 29251456 -113019988 + L2 LINE L2 3163 3305 -8 1876 189 11 50 chr9 29251456 29251613 -113019831 + MLT1A1 LTR MaLR 1 163 -202 2329 105 3 0 chr9 29251613 29251917 -113019527 + AluSp SINE Alu 1 305 -8 1876 189 11 50 chr9 29251917 29252139 -113019305 + MLT1A1 LTR MaLR 163 365 0 684 254 39 93 chr9 29253008 29253287 -113018157 - MER102a DNA MER1_type -6 324 61 28 29 0 0 chr9 29253368 29253403 -113018041 + AT_rich Low_complexity Low_complexity 1 35 0 4617 178 116 6 chr9 29253407 29254405 -113017039 + L1MC3 LINE L1 6676 7783 -2 656 165 338 0 chr9 29254525 29254658 -113016786 - MER45A DNA AcHobo 0 178 1 192 242 84 151 chr9 29255185 29255217 -113016227 - MIR SINE MIR -67 141 108 1814 195 51 38 chr9 29255217 29255611 -113015833 + MER57A LTR ERV1 1 399 -4 192 242 84 151 chr9 29255611 29255705 -113015739 - MIR SINE MIR -100 108 38 622 262 160 39 chr9 29256007 29256289 -113015155 + MER102b DNA MER1_type 1 316 -25 272 365 17 0 chr9 29256833 29256948 -113014496 + Tigger8 DNA MER2_type 2 118 -548 608 211 77 0 chr9 29257376 29257532 -113013912 - L1ME4a LINE L1 -85 6036 5869 458 216 288 7 chr9 29257935 29258074 -113013370 - MER5B DNA MER1_type 0 178 1 930 227 11 5 chr9 29258083 29258268 -113013176 + MER5A DNA MER1_type 2 187 -2 578 247 57 25 chr9 29258336 29258494 -113012950 + MIR SINE MIR 26 188 -74 666 211 106 0 chr9 29258891 29259052 -113012392 - MER5A DNA MER1_type 0 189 12 446 258 47 12 chr9 29259408 29259574 -113011870 - MIR SINE MIR -48 214 44 289 257 69 83 chr9 29260213 29260357 -113011087 - MIR3 SINE MIR -64 144 3 474 247 53 27 chr9 29260384 29260534 -113010910 + L3 LINE CR1 1357 1510 -67 262 313 106 12 chr9 29260542 29260702 -113010742 - MER5B DNA MER1_type -3 175 1 546 260 90 19 chr9 29260784 29260993 -113010451 - MIR SINE MIR 0 262 36 2112 73 95 0 chr9 29261649 29261923 -113009521 - AluSc SINE Alu -9 300 1 256 235 0 0 chr9 29262620 29262671 -113008773 + MIR3 SINE MIR 151 201 -7 1696 176 3 7 chr9 29263036 29263320 -113008124 - AluJo SINE Alu -17 295 13 235 281 58 41 chr9 29263392 29263513 -113007931 + MIR SINE MIR 27 149 -113 180 0 0 0 chr9 29264104 29264124 -113007320 + (TA)n Simple_repeat Simple_repeat 2 21 0 470 266 165 32 chr9 29264491 29264709 -113006735 + MIR SINE MIR 16 262 0 430 276 35 9 chr9 29265350 29265466 -113005978 - MER103 DNA DNA -45 121 3 213 346 39 0 chr9 29265688 29265766 -113005678 + L3b LINE CR1 1476 1556 -27 248 282 51 26 chr9 29266690 29266768 -113004676 - L2 LINE L2 -10 3262 3183 297 280 95 52 chr9 29267481 29267722 -113003722 + MIR SINE MIR 3 262 0 584 268 108 21 chr9 29268766 29268960 -113002484 + MIR SINE MIR 46 256 -6 1179 211 14 9 chr9 29269304 29269517 -113001927 + MER20 DNA MER1_type 4 217 -2 1455 112 10 10 chr9 29269856 29270062 -113001382 - L1PB1 LINE L1 -3 6148 5943 852 295 135 50 chr9 29270074 29270522 -113000922 + L2 LINE L2 2332 2741 -572 1081 172 50 0 chr9 29270522 29270702 -113000742 + MER5A DNA MER1_type 1 189 0 852 295 135 50 chr9 29270702 29271154 -113000290 + L2 LINE L2 2741 3313 0 266 304 27 27 chr9 29271184 29271332 -113000112 - MER117 DNA MER1_type 0 197 50 32 0 0 0 chr9 29271332 29271364 -113000080 + AT_rich Low_complexity Low_complexity 1 32 0 206 105 26 0 chr9 29271441 29271479 -112999965 + (TA)n Simple_repeat Simple_repeat 1 39 0 1185 135 19 53 chr9 29271479 29271687 -112999757 - AluSg/x SINE Alu -27 285 85 901 143 0 0 chr9 29271755 29271888 -112999556 - FLAM_C SINE Alu 0 133 1 192 265 59 29 chr9 29271935 29272003 -112999441 - MIR SINE MIR -166 96 27 1816 161 92 18 chr9 29272107 29272443 -112999001 + MLT1A1 LTR MaLR 1 361 -4 504 271 39 19 chr9 29273431 29273586 -112997858 + MER5A DNA MER1_type 7 164 -25 374 226 29 20 chr9 29274123 29274225 -112997219 + MIR SINE MIR 54 156 -106 234 0 0 0 chr9 29274759 29274785 -112996659 + (TG)n Simple_repeat Simple_repeat 2 27 0 705 257 101 25 chr9 29275020 29275257 -112996187 - MIR SINE MIR -4 258 4 1354 173 47 11 chr9 29276553 29276831 -112994613 + L1MA8 LINE L1 6004 6291 0 407 303 104 26 chr9 29277111 29277342 -112994102 + MIR SINE MIR 2 250 -12 373 198 0 37 chr9 29277838 29277919 -112993525 + LTR67 LTR ERVL 478 555 -2 256 289 97 9 chr9 29278250 29278364 -112993080 - MIR3 SINE MIR -45 163 40 578 205 89 0 chr9 29279193 29279305 -112992139 - MER20 DNA MER1_type 0 219 98 340 310 29 58 chr9 29279748 29279922 -112991522 + MIR SINE MIR 86 254 -8 236 238 12 71 chr9 29280291 29280375 -112991069 + MER116 DNA Mariner 2 80 0 439 322 106 28 chr9 29281071 29281506 -112989938 + L2 LINE L2 2230 2698 -616 562 298 85 52 chr9 29281665 29282085 -112989359 + L2 LINE L2 2796 3227 -45 589 280 106 5 chr9 29283376 29283583 -112987861 + MIR SINE MIR 23 250 -12 469 287 47 13 chr9 29283660 29283810 -112987634 + L2 LINE L2 3159 3313 0 187 308 0 0 chr9 29283891 29283943 -112987501 + L2 LINE L2 3262 3313 0 810 134 0 17 chr9 29284905 29285024 -112986420 - AluSg SINE Alu 0 312 196 1072 114 0 0 chr9 29285025 29285165 -112986279 - AluSg SINE Alu -170 140 1 5609 147 23 44 chr9 29285176 29285731 -112985713 - L1MA4 LINE L1 -1 6299 5734 2178 128 3 6 chr9 29285731 29286044 -112985400 - AluSx SINE Alu 0 312 1 5609 147 23 44 chr9 29286044 29286482 -112984962 - L1MA4 LINE L1 -566 5734 5327 2450 100 0 0 chr9 29286482 29286792 -112984652 - AluSg SINE Alu 0 310 1 5609 147 23 44 chr9 29286792 29287042 -112984402 - L1MA4 LINE L1 -973 5327 5073 4007 193 125 5 chr9 29287010 29288219 -112983225 + L1MA4 LINE L1 3633 5085 -1061 * 2163 122 10 0 chr9 29288220 29288523 -112982921 - AluSq SINE Alu -7 306 1 500 286 119 0 chr9 29290351 29290536 -112980908 - MIR SINE MIR -1 261 55 428 289 8 8 chr9 29290531 29290652 -112980792 - L2 LINE L2 0 3313 3193 * 4347 154 23 12 chr9 29290751 29291499 -112979945 + L1MB4 LINE L1 5425 6180 0 339 75 19 0 chr9 29292141 29292194 -112979250 - L1ME4a LINE L1 0 6121 6068 408 254 56 0 chr9 29292248 29292374 -112979070 - L1ME4a LINE L1 -206 5915 5783 217 196 0 36 chr9 29293027 29293067 -112978377 + GA-rich Low_complexity Low_complexity 2 41 -14 2006 132 40 3 chr9 29293067 29293392 -112978052 + L1MC2 LINE L1 5999 6335 -9 217 196 0 36 chr9 29293392 29293407 -112978037 + GA-rich Low_complexity Low_complexity 41 55 0 205 243 0 0 chr9 29293925 29293962 -112977482 + polypyrimidine Low_complexity Low_complexity 4 40 0 434 311 105 38 chr9 29294901 29295245 -112976199 - L2 LINE L2 -583 2731 2365 2305 83 30 7 chr9 29296246 29296547 -112974897 - AluSx SINE Alu -4 308 1 463 238 19 44 chr9 29296697 29296857 -112974587 + L1MD3 LINE L1 7826 7981 -14 1634 161 76 17 chr9 29297931 29298222 -112973222 - AluJo SINE Alu -4 308 1 2401 67 0 3 chr9 29298468 29298794 -112972650 + AluY SINE Alu 1 325 0 253 241 253 0 chr9 29299064 29299143 -112972301 - MIR SINE MIR -3 259 161 1971 96 6 93 chr9 29299167 29299499 -112971945 + AluSx SINE Alu 1 303 -9 8812 181 19 4 chr9 29299502 29301842 -112969602 + L1PB1 LINE L1 3414 5791 -360 432 0 0 0 chr9 29301935 29301983 -112969461 + (TA)n Simple_repeat Simple_repeat 2 49 0 2431 138 0 0 chr9 29301983 29302339 -112969105 + L1PB1 LINE L1 5796 6151 0 2316 88 0 3 chr9 29302483 29302778 -112968666 - AluSq SINE Alu -19 294 1 1116 266 117 39 chr9 29302857 29303478 -112967966 + L2 LINE L2 2634 3313 0 206 174 43 22 chr9 29304486 29304532 -112966912 - L2 LINE L2 -5 3267 3221 274 262 0 0 chr9 29304540 29304601 -112966843 + MIR SINE MIR 85 145 -63 1038 237 40 16 chr9 29305201 29305450 -112965994 - MIR SINE MIR -7 255 1 2401 70 10 0 chr9 29306482 29306781 -112964663 + AluSp SINE Alu 3 304 -9 944 201 21 16 chr9 29306807 29307001 -112964443 - MER46C DNA MER2_type -29 309 115 543 256 156 15 chr9 29307415 29307614 -112963830 - MIR SINE MIR -18 244 18 298 297 117 0 chr9 29309509 29309620 -112961824 - L2 LINE L2 0 3272 3149 445 246 157 15 chr9 29309626 29309760 -112961684 - MER5A DNA MER1_type -2 187 35 225 318 84 9 chr9 29309840 29309947 -112961497 - L2 LINE L2 -243 3029 2915 186 301 48 39 chr9 29313828 29313931 -112957513 + L2 LINE L2 3164 3267 -5 212 321 0 0 chr9 29314013 29314066 -112957378 - L3b LINE CR1 -9 1574 1522 30 59 0 0 chr9 29314603 29314654 -112956790 + AT_rich Low_complexity Low_complexity 1 51 0 791 285 182 27 chr9 29315603 29316239 -112955205 + L2 LINE L2 1901 2635 -679 1926 204 90 51 chr9 29316239 29316434 -112955010 + MER34C LTR ERV1 1 187 -398 375 23 0 0 chr9 29316434 29316478 -112954966 + (TC)n Simple_repeat Simple_repeat 1 44 0 1926 204 90 51 chr9 29316478 29316835 -112954609 + MER34C LTR ERV1 187 575 -10 521 317 91 43 chr9 29316848 29316970 -112954474 + L2 LINE L2 2643 2758 -555 2072 126 0 3 chr9 29316970 29317287 -112954157 - AluSq SINE Alu 0 316 1 521 317 91 43 chr9 29317287 29317549 -112953895 + L2 LINE L2 2758 3045 -268 356 259 80 0 chr9 29317664 29317776 -112953668 - L2 LINE L2 0 3313 3193 277 321 43 62 chr9 29317755 29317917 -112953527 + L2 LINE L2 3107 3265 -7 * 404 305 50 93 chr9 29318110 29318655 -112952789 - L2 LINE L2 -134 3179 2661 218 246 210 29 chr9 29320452 29320590 -112950854 - MIR SINE MIR 0 262 100 212 83 0 28 chr9 29320774 29320810 -112950634 + (CATA)n Simple_repeat Simple_repeat 4 38 0 228 250 44 0 chr9 29321222 29321290 -112950154 + MIR SINE MIR 74 144 -118 1871 141 17 14 chr9 29322243 29322533 -112948911 - MER1B DNA MER1_type 0 339 49 * 3796 148 43 7 chr9 29322525 29323128 -112948316 - Tigger7 DNA MER2_type -107 626 2 1892 173 68 20 chr9 29323277 29323677 -112947767 + Charlie1 DNA MER1_type 2343 2761 0 275 212 35 12 chr9 29323728 29323813 -112947631 + L2 LINE L2 3108 3194 -119 350 219 170 81 chr9 29323822 29324231 -112947213 + LTR33A LTR ERVL 1 509 -14 1044 167 44 0 chr9 29324394 29324574 -112946870 - MER5A DNA MER1_type -1 188 1 232 219 61 49 chr9 29325302 29325384 -112946060 - MER117 DNA MER1_type -16 181 99 202 139 0 28 chr9 29325505 29325541 -112945903 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 1087 111 6 11 chr9 29325541 29325721 -112945723 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 568 258 113 28 chr9 29326056 29326269 -112945175 + MIR SINE MIR 31 261 -1 484 274 48 67 chr9 29326567 29326775 -112944669 - MIR SINE MIR -8 254 51 428 293 133 16 chr9 29328048 29328236 -112943208 - MIR SINE MIR -6 256 47 732 246 127 31 chr9 29329527 29329704 -112941740 + MIR SINE MIR 13 218 -44 2351 114 42 33 chr9 29329704 29330065 -112941379 - THE1B LTR MaLR 0 364 1 732 246 127 31 chr9 29330065 29330115 -112941329 + MIR SINE MIR 218 262 0 449 242 142 64 chr9 29330744 29330963 -112940481 - MIR SINE MIR -4 258 23 2069 129 0 16 chr9 29331079 29331390 -112940054 + AluSx SINE Alu 1 306 -6 232 301 269 0 chr9 29331650 29331743 -112939701 + L2 LINE L2 3196 3313 0 198 0 0 0 chr9 29331938 29331960 -112939484 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 403 318 76 42 chr9 29332071 29332307 -112939137 + MIR SINE MIR 8 251 -11 375 89 0 0 chr9 29333565 29333621 -112937823 + (TCCA)n Simple_repeat Simple_repeat 1 56 0 231 357 63 16 chr9 29333714 29333840 -112937604 - L2 LINE L2 -223 3049 2918 623 122 70 0 chr9 29333915 29334030 -112937414 + L1MA8 LINE L1 5270 5392 -899 * 1933 132 12 35 chr9 29334020 29334362 -112937082 + L1MA8 LINE L1 5759 6092 -199 285 294 15 59 chr9 29334365 29334501 -112936943 + MER5A DNA MER1_type 55 184 -5 599 158 211 0 chr9 29334567 29334700 -112936744 - MER103 DNA DNA -1 165 5 393 229 0 12 chr9 29335687 29335770 -112935674 - L2 LINE L2 0 3313 3232 271 284 15 0 chr9 29336287 29336354 -112935090 - MER113 DNA MER1_type? 0 521 454 222 184 0 0 chr9 29337737 29337775 -112933669 + GA-rich Low_complexity Low_complexity 1 38 0 257 248 53 121 chr9 29337816 29338022 -112933422 + MLT1K LTR MaLR 392 583 -5 1160 164 34 29 chr9 29338095 29338303 -112933141 + MER3 DNA MER1_type 1 209 0 324 308 26 43 chr9 29338416 29338533 -112932911 - MIR3 SINE MIR -84 124 10 23 0 0 0 chr9 29339819 29339842 -112931602 + AT_rich Low_complexity Low_complexity 1 23 0 474 143 0 0 chr9 29339919 29339982 -112931462 + AluJb SINE Alu 183 245 -67 1178 171 9 32 chr9 29339982 29340199 -112931245 - AluJb SINE Alu -57 255 44 247 150 0 0 chr9 29340232 29340272 -112931172 - MIR SINE MIR -111 151 112 251 283 0 0 chr9 29340711 29340771 -112930673 - MER5A DNA MER1_type -126 63 4 297 216 0 0 chr9 29340790 29340841 -112930603 + MER5A DNA MER1_type 52 102 -87 198 0 0 0 chr9 29341263 29341285 -112930159 + (A)n Simple_repeat Simple_repeat 1 22 0 422 336 34 0 chr9 29341386 29341505 -112929939 - L2 LINE L2 -1 3271 3149 220 216 20 0 chr9 29342188 29342239 -112929205 + L2 LINE L2 3221 3272 0 440 250 63 28 chr9 29344638 29344784 -112926660 - MIR SINE MIR -68 140 34 354 240 55 115 chr9 29344950 29345065 -112926379 + MIR SINE MIR 25 125 -137 1931 156 17 3 chr9 29345065 29345366 -112926078 + AluJb SINE Alu 1 305 -7 354 240 55 115 chr9 29345366 29345450 -112925994 + MIR SINE MIR 125 212 -50 2987 82 0 0 chr9 29346024 29346379 -112925065 - THE1A LTR MaLR 0 355 1 12525 83 19 0 chr9 29346379 29347930 -112923514 - THE1A-int LTR MaLR 0 1580 1 2913 84 3 3 chr9 29347930 29348285 -112923159 - THE1A LTR MaLR 0 355 1 372 262 95 42 chr9 29348592 29348760 -112922684 + MIR SINE MIR 31 207 -55 300 381 101 0 chr9 29349961 29350100 -112921344 + L2 LINE L2 3107 3259 -13 840 141 7 7 chr9 29350518 29350653 -112920791 - AluJo SINE Alu -177 135 1 295 322 51 79 chr9 29350941 29351118 -112920326 - MIR3 SINE MIR -25 183 12 1501 171 29 44 chr9 29351190 29351322 -112920122 + AluJo SINE Alu 2 135 -177 180 0 0 0 chr9 29351322 29351342 -112920102 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 1501 171 29 44 chr9 29351342 29351524 -112919920 + AluJo SINE Alu 135 311 -1 31 0 0 0 chr9 29351661 29351692 -112919752 + AT_rich Low_complexity Low_complexity 1 31 0 532 294 38 55 chr9 29352855 29353093 -112918351 + MIR SINE MIR 4 237 -25 243 0 0 0 chr9 29354064 29354091 -112917353 + (A)n Simple_repeat Simple_repeat 1 27 0 720 165 41 17 chr9 29355233 29355509 -112915935 + MLT1A1 LTR MaLR 36 365 0 326 310 122 13 chr9 29356161 29356270 -112915174 + L1ME4a LINE L1 5563 5659 -462 1891 220 97 36 chr9 29356270 29356828 -112914616 + MLT1E LTR MaLR 2 593 0 326 310 122 13 chr9 29356828 29357021 -112914423 + L1ME4a LINE L1 5659 5898 -223 1179 277 32 19 chr9 29357187 29357566 -112913878 + L2 LINE L2 2552 2935 -379 2482 181 11 19 chr9 29357566 29358031 -112913413 - MLT1C LTR MaLR 0 467 7 236 196 0 0 chr9 29358041 29358087 -112913357 + L2 LINE L2 2933 2978 -335 981 320 24 11 chr9 29358087 29358459 -112912985 + LTR16B LTR ERVL 1 377 -87 562 229 41 8 chr9 29358466 29358588 -112912856 + MER45A DNA AcHobo 33 158 -20 367 218 0 35 chr9 29358588 29358675 -112912769 + LTR16B LTR ERVL 380 463 -1 881 260 88 22 chr9 29358675 29358994 -112912450 + L2 LINE L2 2974 3313 0 562 285 65 39 chr9 29359118 29360188 -112911256 + L1MEd LINE L1 232 1342 -4863 387 0 0 0 chr9 29360195 29360238 -112911206 + (CA)n Simple_repeat Simple_repeat 2 44 0 380 335 28 14 chr9 29360243 29360458 -112910986 + HAL1 LINE L1 1406 1623 -884 1825 165 73 52 chr9 29360458 29360839 -112910605 - MSTD LTR MaLR 0 396 8 1639 169 0 15 chr9 29361194 29361460 -112909984 + AluJo SINE Alu 37 298 -14 1761 95 88 33 chr9 29361541 29361687 -112909757 - AluSc SINE Alu -16 293 156 2469 67 0 3 chr9 29361687 29361984 -112909460 - AluY SINE Alu -15 296 1 1761 95 88 33 chr9 29361984 29362110 -112909334 - AluSc SINE Alu -153 156 6 232 352 38 23 chr9 29362438 29362702 -112908742 + L1MEd LINE L1 2023 2290 -4106 282 243 29 0 chr9 29362703 29362773 -112908671 - Charlie8 DNA MER1_type -4 2413 2342 * 383 303 68 68 chr9 29362767 29362890 -112908554 - Charlie8 DNA MER1_type -2093 324 202 2571 56 0 25 chr9 29362890 29363209 -112908235 - AluY SINE Alu 0 311 1 383 303 68 68 chr9 29363209 29363349 -112908095 - Charlie8 DNA MER1_type -2214 203 61 2646 52 0 0 chr9 29364510 29364816 -112906628 - AluY SINE Alu -5 306 1 21 0 0 0 chr9 29364873 29364894 -112906550 + AT_rich Low_complexity Low_complexity 1 21 0 606 158 135 8 chr9 29366551 29366684 -112904760 - MIR SINE MIR -56 206 57 235 279 189 49 chr9 29366690 29366812 -112904632 - MIR3 SINE MIR -63 145 7 546 271 131 54 chr9 29367325 29367676 -112903768 - L2 LINE L2 -4 3309 2932 2037 144 0 0 chr9 29368233 29368552 -112902892 + AluSx SINE Alu 1 319 0 432 248 8 32 chr9 29368602 29368727 -112902717 + LTR40a LTR ERVL 79 200 -319 767 236 44 35 chr9 29368782 29368985 -112902459 + LTR40a LTR ERVL 197 401 -118 2213 124 0 0 chr9 29369785 29370092 -112901352 - AluSx SINE Alu -5 307 1 222 275 100 0 chr9 29371509 29371589 -112899855 - MIR3 SINE MIR -6 202 115 668 309 50 89 chr9 29371593 29372053 -112899391 - L2 LINE L2 -5 3267 2826 251 310 40 20 chr9 29372038 29372138 -112899306 - MIR SINE MIR -86 122 21 * 2417 77 3 0 chr9 29372976 29373276 -112898168 + AluY SINE Alu 1 301 -10 487 280 68 38 chr9 29374205 29374441 -112897003 + MIR SINE MIR 20 262 0 330 107 0 36 chr9 29374517 29374573 -112896871 - AluSg SINE Alu 0 301 248 9253 57 2 8 chr9 29374573 29374742 -112896702 + MER11C LTR ERVK 1 170 -901 2354 82 0 3 chr9 29374742 29375036 -112896408 + AluY SINE Alu 1 293 -18 9253 57 2 8 chr9 29375036 29375944 -112895500 + MER11C LTR ERVK 170 1071 0 1948 107 0 0 chr9 29375944 29376196 -112895248 - AluSg SINE Alu -58 252 1 294 263 281 0 chr9 29376273 29376387 -112895057 - MER5A DNA MER1_type -35 154 9 1732 170 7 7 chr9 29376431 29376768 -112894676 + AluJb SINE Alu 1 337 0 192 266 172 0 chr9 29376859 29376923 -112894521 + L2 LINE L2 3104 3178 -94 286 273 125 39 chr9 29378595 29378906 -112892538 + L1ME4a LINE L1 5612 5949 -172 301 245 91 42 chr9 29378908 29379051 -112892393 + L1ME4a LINE L1 5972 6121 0 587 311 54 5 chr9 29380100 29380322 -112891122 - Charlie8 DNA MER1_type -2166 251 19 6390 59 1 3 chr9 29381737 29383047 -112888397 + L1PA6 LINE L1 4747 6055 -99 836 126 0 0 chr9 29383047 29383166 -112888278 + AluSg/x SINE Alu 180 298 -14 367 230 0 11 chr9 29384038 29384125 -112887319 - MER117 DNA MER1_type -106 91 6 804 293 99 28 chr9 29385071 29385463 -112885981 + LTR16A LTR ERVL 23 442 -8 1084 188 104 21 chr9 29385674 29385914 -112885530 + Tigger6 DNA MER2_type 4 263 -820 2316 185 135 0 chr9 29386121 29386564 -112884880 - MLT1D LTR MaLR -2 503 1 613 234 15 0 chr9 29386799 29386936 -112884508 - MER103 DNA DNA -15 151 13 221 316 41 31 chr9 29387563 29387661 -112883783 - L3 LINE CR1 -4 1573 1475 254 256 0 70 chr9 29387835 29387921 -112883523 - MIR SINE MIR -1 261 182 2402 64 3 3 chr9 29387921 29388216 -112883228 - AluY SINE Alu -16 295 1 1052 92 0 0 chr9 29388234 29388365 -112883079 - AluSg1 SINE Alu -178 131 1 373 273 117 42 chr9 29388462 29388646 -112882798 - MIR SINE MIR -26 236 42 267 271 29 0 chr9 29389108 29389178 -112882266 + L2 LINE L2 3240 3311 -2 21 57 0 0 chr9 29389960 29389995 -112881449 + AT_rich Low_complexity Low_complexity 1 35 0 189 243 257 0 chr9 29390197 29390271 -112881173 - MIR SINE MIR -76 132 40 253 169 15 15 chr9 29390652 29390717 -112880727 + GA-rich Low_complexity Low_complexity 4 68 0 2156 129 0 0 chr9 29390795 29391098 -112880346 - AluSx SINE Alu -9 303 1 2239 101 3 16 chr9 29391100 29391406 -112880038 - AluSx SINE Alu -10 302 1 250 317 30 0 chr9 29391890 29391991 -112879453 + MER103 DNA DNA 8 111 -55 254 289 61 18 chr9 29392696 29392810 -112878634 + MIR SINE MIR 83 201 -61 1090 252 65 41 chr9 29393250 29393666 -112877778 + MLT1J2 LTR MaLR 6 431 -19 22 0 0 0 chr9 29393713 29393735 -112877709 + AT_rich Low_complexity Low_complexity 1 22 0 794 321 69 13 chr9 29394639 29395121 -112876323 + L2 LINE L2 2554 3066 -247 545 94 12 0 chr9 29395244 29395329 -112876115 + (TGGA)n Simple_repeat Simple_repeat 3 88 0 207 0 0 0 chr9 29395726 29395749 -112875695 + (A)n Simple_repeat Simple_repeat 1 23 0 456 284 96 24 chr9 29396758 29396966 -112874478 + MIR SINE MIR 40 262 0 1711 228 43 39 chr9 29397198 29397663 -112873781 + MLT1C LTR MaLR 1 467 0 495 339 74 41 chr9 29398047 29398560 -112872884 + L2 LINE L2 2079 2608 -706 229 333 0 0 chr9 29398604 29398664 -112872780 + L2 LINE L2 3174 3233 -39 2466 79 13 0 chr9 29398752 29399055 -112872389 + AluSx SINE Alu 1 307 -5 270 291 152 0 chr9 29399131 29399210 -112872234 - L2 LINE L2 0 3272 3182 344 172 0 0 chr9 29400599 29400657 -112870787 - L2 LINE L2 0 3313 3256 197 346 72 33 chr9 29400925 29401078 -112870366 - L2 LINE L2 -75 3197 3039 524 126 137 0 chr9 29402218 29402313 -112869131 + MER53 DNA DNA 1 108 -81 189 0 0 0 chr9 29403071 29403092 -112868352 + (TG)n Simple_repeat Simple_repeat 2 22 0 2360 90 0 3 chr9 29403343 29403653 -112867791 + AluSc SINE Alu 1 309 0 24 0 0 0 chr9 29403711 29403735 -112867709 + AT_rich Low_complexity Low_complexity 1 24 0 264 100 0 0 chr9 29403803 29403843 -112867601 + (TA)n Simple_repeat Simple_repeat 2 41 0 706 302 126 6 chr9 29403844 29404217 -112867227 - L1ME4a LINE L1 -193 5928 5511 26 0 0 0 chr9 29404291 29404317 -112867127 + AT_rich Low_complexity Low_complexity 1 26 0 246 62 0 0 chr9 29404847 29404879 -112866565 + (GAAAA)n Simple_repeat Simple_repeat 4 35 0 213 39 0 0 chr9 29405331 29405357 -112866087 + (TGAG)n Simple_repeat Simple_repeat 1 26 0 189 0 0 0 chr9 29405533 29405554 -112865890 + (A)n Simple_repeat Simple_repeat 1 21 0 301 239 0 15 chr9 29406944 29407011 -112864433 + L3 LINE CR1 1510 1575 -2 319 296 100 29 chr9 29408103 29408414 -112863030 + L1ME4a LINE L1 5329 5661 -460 291 243 64 81 chr9 29411534 29411733 -112859711 + MIR SINE MIR 12 212 -50 381 242 158 8 chr9 29412296 29412416 -112859028 + MIR SINE MIR 105 242 -20 208 138 0 35 chr9 29413348 29413406 -112858038 + (TA)n Simple_repeat Simple_repeat 1 56 0 610 110 55 0 chr9 29413892 29413983 -112857461 + FRAM SINE Alu 69 164 -12 279 268 24 0 chr9 29415117 29415199 -112856245 + CT-rich Low_complexity Low_complexity 4 87 0 306 148 0 0 chr9 29415985 29416039 -112855405 + (GGAA)n Simple_repeat Simple_repeat 4 57 0 334 206 0 103 chr9 29416444 29416551 -112854893 + MLT1H LTR MaLR 454 549 0 232 159 0 23 chr9 29416574 29416618 -112854826 + MIR SINE MIR 212 254 -8 292 234 102 91 chr9 29416648 29416922 -112854522 + L1ME4a LINE L1 5744 6020 -101 506 246 47 23 chr9 29417696 29417867 -112853577 + MLT1K LTR MaLR 397 571 -17 21 0 0 0 chr9 29418041 29418062 -112853382 + AT_rich Low_complexity Low_complexity 1 21 0 474 293 23 8 chr9 29418187 29418320 -112853124 - MIR SINE MIR -6 256 122 390 241 85 47 chr9 29418697 29418909 -112852535 + LTR16C LTR ERVL 266 485 -6 36 40 0 0 chr9 29419110 29419160 -112852284 + AT_rich Low_complexity Low_complexity 1 50 0 694 231 63 80 chr9 29419427 29419458 -112851986 - MLT1I LTR MaLR -18 391 361 2102 189 110 23 chr9 29419458 29419929 -112851515 + MLT2B2 LTR ERVL 1 512 -3 694 231 63 80 chr9 29419929 29420196 -112851248 - MLT1I LTR MaLR -48 361 98 392 231 224 8 chr9 29420287 29420421 -112851023 + MIR SINE MIR 91 253 -9 217 385 42 30 chr9 29420431 29420597 -112850847 - L3b LINE CR1 -311 1272 1105 520 264 90 14 chr9 29422115 29422259 -112849185 - L2 LINE L2 0 3272 3118 277 195 230 11 chr9 29422333 29422420 -112849024 - L2 LINE L2 -8 3305 3200 345 325 109 39 chr9 29422444 29422726 -112848718 - L2 LINE L2 -216 3056 2732 2430 68 0 0 chr9 29422726 29423018 -112848426 - AluY SINE Alu -19 292 1 345 325 109 39 chr9 29423018 29423218 -112848226 - L2 LINE L2 -540 2732 2547 909 274 9 14 chr9 29423490 29423713 -112847731 - MIR SINE MIR -8 254 33 22 0 0 0 chr9 29424489 29424511 -112846933 + AT_rich Low_complexity Low_complexity 1 22 0 405 294 119 0 chr9 29424518 29424644 -112846800 - L2 LINE L2 -3 3269 3129 246 319 109 14 chr9 29424723 29424861 -112846583 - L2 LINE L2 -523 2791 2641 2364 214 35 24 chr9 29424989 29425308 -112846136 - L1MEc LINE L1 -3286 2929 2615 2245 60 53 3 chr9 29425308 29425592 -112845852 + AluY SINE Alu 1 298 -13 2364 214 35 24 chr9 29425592 29425951 -112845493 - L1MEc LINE L1 -3600 2615 2243 1608 132 42 100 chr9 29425956 29426366 -112845078 - L1MA8 LINE L1 -3 6288 5903 233 167 0 0 chr9 29426365 29426413 -112845031 - L1MEc LINE L1 -4094 2302 2255 * 465 187 98 0 chr9 29426403 29426815 -112844629 + L1MEc LINE L1 1833 2318 -4078 259 228 281 24 chr9 29426815 29426982 -112844462 - MIR SINE MIR -13 249 40 507 244 96 0 chr9 29427099 29427234 -112844210 + MIR SINE MIR 43 190 -72 35 83 0 0 chr9 29427637 29427721 -112843723 + AT_rich Low_complexity Low_complexity 1 84 0 23 0 0 0 chr9 29428365 29428388 -112843056 + AT_rich Low_complexity Low_complexity 1 23 0 231 36 0 0 chr9 29429819 29429847 -112841597 + (A)n Simple_repeat Simple_repeat 1 28 0 2266 100 3 0 chr9 29430231 29430522 -112840922 - AluSc SINE Alu -15 294 3 31 26 0 0 chr9 29431371 29431409 -112840035 + AT_rich Low_complexity Low_complexity 1 38 0 340 233 27 33 chr9 29431506 29431656 -112839788 + (TA)n Simple_repeat Simple_repeat 1 149 0 207 229 0 0 chr9 29432710 29432745 -112838699 + L2 LINE L2 3211 3245 -27 4172 181 48 24 chr9 29433205 29433734 -112837710 - L1P LINE L1 -1638 4508 3945 1845 162 0 26 chr9 29433734 29434036 -112837408 - AluJb SINE Alu -18 294 1 4172 181 48 24 chr9 29434036 29434441 -112837003 - L1P LINE L1 -2201 3945 3551 5156 110 81 1 chr9 29434441 29436030 -112835414 + L1PA15 LINE L1 4483 6162 -3 24 32 0 0 chr9 29436068 29436099 -112835345 + AT_rich Low_complexity Low_complexity 1 31 0 186 194 28 0 chr9 29436895 29436931 -112834513 - L2 LINE L2 -16 3256 3220 1623 181 10 17 chr9 29436939 29437238 -112834206 - AluJo SINE Alu -10 302 6 22 0 0 0 chr9 29437426 29437448 -112833996 + AT_rich Low_complexity Low_complexity 1 22 0 333 303 92 9 chr9 29437603 29437712 -112833732 + L2 LINE L2 3151 3268 -4 435 317 104 5 chr9 29438255 29438649 -112832795 + L1ME4a LINE L1 5616 6048 -73 21 0 0 0 chr9 29439186 29439207 -112832237 + AT_rich Low_complexity Low_complexity 1 21 0 34 65 0 0 chr9 29439409 29439471 -112831973 + AT_rich Low_complexity Low_complexity 1 62 0 396 174 188 49 chr9 29440161 29440305 -112831139 + MER103 DNA DNA 3 166 0 297 289 0 0 chr9 29441930 29442006 -112829438 - MIR SINE MIR -46 162 86 244 275 43 0 chr9 29442244 29442313 -112829131 + MIR SINE MIR 188 259 -3 847 234 106 18 chr9 29442353 29442579 -112828865 - MIR SINE MIR -15 247 2 23 54 0 0 chr9 29443672 29443709 -112827735 + AT_rich Low_complexity Low_complexity 1 37 0 1681 128 8 0 chr9 29444040 29444283 -112827161 - AluSq SINE Alu 0 313 69 207 0 0 0 chr9 29445536 29445559 -112825885 + (A)n Simple_repeat Simple_repeat 1 23 0 227 307 79 40 chr9 29447565 29447666 -112823778 - MIR3 SINE MIR -19 189 85 195 128 51 26 chr9 29448691 29448730 -112822714 + L2 LINE L2 3227 3266 -6 1732 176 79 29 chr9 29448983 29449426 -112822018 + MLT1C LTR MaLR 3 467 0 189 0 0 0 chr9 29449466 29449487 -112821957 + (A)n Simple_repeat Simple_repeat 1 21 0 5188 129 85 18 chr9 29449949 29451050 -112820394 + Tigger3b DNA MER2_type 1 1198 -33 2024 101 7 23 chr9 29451963 29452297 -112819147 + AluSx SINE Alu 1 312 0 1764 167 14 0 chr9 29452842 29453123 -112818321 - AluJo SINE Alu -17 295 11 234 0 0 0 chr9 29454590 29454616 -112816828 + (CCG)n Simple_repeat Simple_repeat 1 26 0 326 197 15 53 chr9 29454796 29454928 -112816516 + C-rich Low_complexity Low_complexity 3 129 0 190 244 0 0 chr9 29455442 29455487 -112815957 + L2 LINE L2 3264 3308 -5 2193 177 42 11 chr9 29456054 29456501 -112814943 + MER65C LTR ERV1 1 461 0 458 236 109 6 chr9 29456551 29456716 -112814728 + L1MA9 LINE L1 5917 6098 -214 2068 149 83 5 chr9 29456716 29457113 -112814331 - MSTA LTR MaLR 0 428 1 4740 186 35 12 chr9 29457119 29457934 -112813510 - MSTA-int LTR MaLR -6 1645 803 3696 185 37 4 chr9 29457934 29458643 -112812801 - MER50 LTR ERV1 -2 732 1 4740 186 35 12 chr9 29458643 29458799 -112812645 - MSTA-int LTR MaLR -848 803 652 5054 25 3 0 chr9 29458801 29459455 -112811989 + L1PA3 LINE L1 5519 6174 0 3499 164 31 0 chr9 29459465 29460099 -112811345 - MSTA-int LTR MaLR -997 654 1 2527 118 51 17 chr9 29460099 29460513 -112810931 - MSTA LTR MaLR 0 428 1 734 189 55 0 chr9 29460514 29460678 -112810766 + L1MA9 LINE L1 6103 6275 -37 323 244 25 109 chr9 29460689 29460808 -112810636 - MIR SINE MIR -72 190 82 604 281 67 14 chr9 29461712 29461922 -112809522 + MIR SINE MIR 2 222 -40 2215 102 37 0 chr9 29462286 29462580 -112808864 - AluSp SINE Alu -6 307 3 1990 136 30 13 chr9 29462865 29463167 -112808277 + AluSx SINE Alu 1 307 -5 304 311 84 21 chr9 29464115 29464423 -112807021 + L2 LINE L2 2709 3068 -204 595 280 165 9 chr9 29464570 29464788 -112806656 + MIR SINE MIR 11 262 0 181 195 24 0 chr9 29464790 29464831 -112806613 + L2 LINE L2 3272 3313 0 315 309 41 0 chr9 29464833 29464930 -112806514 - MIR SINE MIR -55 153 53 282 333 39 31 chr9 29464985 29465114 -112806330 + L2 LINE L2 3127 3256 -16 22 56 0 0 chr9 29466196 29466232 -112805212 + AT_rich Low_complexity Low_complexity 1 36 0 1972 141 7 20 chr9 29466713 29467010 -112804434 - AluSx SINE Alu -12 300 8 2168 177 2 8 chr9 29468025 29468421 -112803023 + MER57A LTR ERV1 1 394 -9 1762 126 21 37 chr9 29468427 29468752 -112802692 - L1MA3 LINE L1 -8 6297 5978 1467 125 12 0 chr9 29468752 29469050 -112802394 + L1M1 LINE L1 5211 5511 -743 180 260 80 0 chr9 29469292 29469342 -112802102 + L2 LINE L2 3208 3261 -11 35 88 0 0 chr9 29469433 29469524 -112801920 + AT_rich Low_complexity Low_complexity 1 91 0 969 258 75 73 chr9 29469576 29469778 -112801666 - L1MC4a LINE L1 -1773 6035 5835 2233 44 34 27 chr9 29469778 29470072 -112801372 - AluY SINE Alu -15 296 1 969 258 75 73 chr9 29470072 29470527 -112800917 - L1MC4a LINE L1 -1973 5835 5377 726 310 20 27 chr9 29470536 29470943 -112800501 + L1PA16 LINE L1 10 413 -7168 13038 224 39 10 chr9 29471493 29476716 -112794728 + L1PA16 LINE L1 2224 7588 -16 200 216 69 147 chr9 29476850 29476952 -112794492 + L2 LINE L2 3165 3258 -55 * 222 313 47 31 chr9 29476951 29477079 -112794365 - L2 LINE L2 -820 2494 2365 1938 168 93 20 chr9 29477092 29477544 -112793900 + MER52A LTR ERV1 1271 1755 0 1292 195 200 26 chr9 29477619 29478049 -112793395 - MLT1D LTR MaLR 0 505 1 649 227 38 76 chr9 29478879 29479117 -112792327 - L1ME3A LINE L1 -18 6152 5924 452 224 0 22 chr9 29480113 29480247 -112791197 + L1MA9 LINE L1 6157 6287 -25 768 87 9 9 chr9 29480261 29480376 -112791068 - AluSg/x SINE Alu -2 308 194 340 184 37 18 chr9 29480877 29480986 -112790458 + MER113 DNA MER1_type? 90 200 -321 413 339 0 8 chr9 29481006 29481133 -112790311 + MIR3 SINE MIR 8 133 -75 216 0 0 0 chr9 29481133 29481157 -112790287 + (A)n Simple_repeat Simple_repeat 1 24 0 248 268 12 0 chr9 29481267 29481349 -112790095 + MER117 DNA MER1_type 6 88 -109 599 186 215 0 chr9 29483355 29483612 -112787832 - MER33 DNA MER1_type -4 359 6 1409 234 45 28 chr9 29484462 29484924 -112786520 + LTR38 LTR ERV1 87 556 0 28 29 0 0 chr9 29485180 29485215 -112786229 + AT_rich Low_complexity Low_complexity 1 35 0 447 231 60 0 chr9 29485863 29485997 -112785447 + MER5C DNA MER1_type 128 269 -55 358 331 49 22 chr9 29486302 29486486 -112784958 + MER5A DNA MER1_type 1 189 0 449 291 120 20 chr9 29486760 29487059 -112784385 - MLT1J2 LTR MaLR -121 329 1 2468 57 3 0 chr9 29488456 29488755 -112782689 - AluY SINE Alu -11 300 1 241 270 54 34 chr9 29489196 29489344 -112782100 + L1ME LINE L1 5648 5798 -323 25 51 0 0 chr9 29489356 29489395 -112782049 + AT_rich Low_complexity Low_complexity 1 39 0 2057 104 0 0 chr9 29492348 29492636 -112778808 - L1PA7 LINE L1 -6 6148 5861 19105 120 20 87 chr9 29492636 29496749 -112774695 - L1P LINE L1 -2298 3848 12 1605 142 22 18 chr9 29496763 29497037 -112774407 - AluJb SINE Alu -13 299 25 21 36 0 0 chr9 29497059 29497087 -112774357 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr9 29497509 29497530 -112773914 + AT_rich Low_complexity Low_complexity 1 21 0 207 319 80 51 chr9 29498332 29498470 -112772974 - L2 LINE L2 0 3313 3172 468 285 69 0 chr9 29498586 29498730 -112772714 - L2 LINE L2 0 3272 3119 1238 199 17 14 chr9 29498772 29499063 -112772381 - MLT1C LTR MaLR 0 467 176 21 36 0 0 chr9 29500807 29500835 -112770609 + AT_rich Low_complexity Low_complexity 1 28 0 574 261 153 0 chr9 29501493 29501650 -112769794 + MER5A DNA MER1_type 9 189 0 21 0 0 0 chr9 29502268 29502289 -112769155 + AT_rich Low_complexity Low_complexity 1 21 0 2323 53 0 0 chr9 29502337 29502645 -112768799 + AluY SINE Alu 1 308 0 853 277 53 44 chr9 29502645 29503250 -112768194 + L1ME LINE L1 5200 5808 -313 2355 74 0 19 chr9 29503259 29503570 -112767874 + AluY SINE Alu 1 305 -6 214 182 65 13 chr9 29503645 29503722 -112767722 + (TA)n Simple_repeat Simple_repeat 2 82 0 269 185 15 0 chr9 29503806 29503871 -112767573 + (TA)n Simple_repeat Simple_repeat 1 66 0 180 198 86 190 chr9 29504238 29504354 -112767090 + MIR3 SINE MIR 93 196 -12 551 191 229 16 chr9 29504366 29504549 -112766895 - L1ME LINE L1 -583 5583 5362 884 209 57 29 chr9 29504567 29504882 -112766562 + L1ME LINE L1 5026 5349 -797 4703 212 31 45 chr9 29505806 29506188 -112765256 - Zaphod DNA AcHobo -2680 1351 965 1409 186 119 67 chr9 29506188 29506666 -112764778 + MLT1D LTR MaLR 1 503 -2 4703 212 31 45 chr9 29506666 29507653 -112763791 - Zaphod DNA AcHobo -3066 965 1 23 0 0 0 chr9 29508972 29508995 -112762449 + AT_rich Low_complexity Low_complexity 1 23 0 198 0 0 0 chr9 29509021 29509043 -112762401 + (A)n Simple_repeat Simple_repeat 1 22 0 211 350 12 12 chr9 29509391 29509471 -112761973 - MER5A DNA MER1_type -64 125 46 * 376 291 10 10 chr9 29509401 29509504 -112761940 + MER5B DNA MER1_type 75 177 -1 1067 181 37 19 chr9 29509518 29509733 -112761711 + MER20 DNA MER1_type 1 219 0 310 188 16 0 chr9 29509760 29509824 -112761620 + L1MA3 LINE L1 5893 5957 -348 1672 99 39 14 chr9 29509925 29510208 -112761236 + L1MA3 LINE L1 6016 6305 0 617 191 15 103 chr9 29511067 29511271 -112760173 + MER53 DNA DNA 4 189 0 1054 249 207 26 chr9 29512220 29513000 -112758444 - L2 LINE L2 -28 3285 2376 859 252 87 29 chr9 29513076 29513319 -112758125 - L1MC4 LINE L1 -143 7899 7633 2132 96 23 13 chr9 29513319 29513620 -112757824 - AluSx SINE Alu -7 305 2 859 252 87 29 chr9 29513620 29513686 -112757758 - L1MC4 LINE L1 -409 7633 7572 1672 233 58 35 chr9 29513690 29513739 -112757705 - MLT1E LTR MaLR -4 589 543 333 47 0 0 chr9 29513739 29513782 -112757662 + (CA)n Simple_repeat Simple_repeat 2 44 0 1672 233 58 35 chr9 29513782 29514212 -112757232 - MLT1E LTR MaLR -50 543 99 991 229 80 5 chr9 29514347 29515191 -112756253 - L1MC4 LINE L1 -502 7540 6479 787 202 26 47 chr9 29516452 29516645 -112754799 + MER5A DNA MER1_type 1 189 0 2435 78 0 0 chr9 29517007 29517315 -112754129 - AluY SINE Alu -3 308 1 2362 113 80 28 chr9 29517385 29517808 -112753636 + MER65A LTR ERV1 1 445 0 3255 90 0 26 chr9 29518492 29518948 -112752496 + MLT2A1 LTR ERVL 1 444 0 42477 70 8 1 chr9 29518948 29524563 -112746881 + HERVL-A1 LTR ERVL 1 5654 0 3023 62 5 2 chr9 29524565 29524965 -112746479 + MLT2A1 LTR ERVL 3 403 -41 354 318 18 0 chr9 29524983 29525153 -112746291 + (TA)n Simple_repeat Simple_repeat 2 174 0 354 62 0 0 chr9 29525223 29525271 -112746173 + MLT2A1 LTR ERVL 406 453 0 22260 148 9 24 chr9 29526249 29529259 -112742185 + L1P3 LINE L1 3 2967 -3494 2074 97 4 0 chr9 29529259 29529528 -112741916 - AluY SINE Alu -41 270 1 22260 148 9 24 chr9 29529528 29531830 -112739614 + L1P3 LINE L1 2967 5301 -1160 6361 89 1 2 chr9 29531834 29533087 -112738357 + L1PA8A LINE L1 4878 6131 0 795 172 0 8 chr9 29533773 29533907 -112737537 + FLAM_C SINE Alu 1 133 0 7254 128 24 17 chr9 29533939 29535162 -112736282 + Tigger3b DNA MER2_type 1 1231 0 21 57 0 0 chr9 29535250 29535285 -112736159 + AT_rich Low_complexity Low_complexity 1 35 0 1913 229 28 20 chr9 29535371 29535907 -112735537 - L1ME1 LINE L1 -9 6157 5618 4042 120 46 88 chr9 29536097 29536916 -112734528 + LTR1 LTR ERV1 1 785 0 2305 65 17 3 chr9 29537383 29537677 -112733767 + AluY SINE Alu 1 298 -13 2257 84 3 0 chr9 29539885 29540192 -112731252 - AluSp SINE Alu 0 308 1 718 319 70 17 chr9 29540770 29541254 -112730190 + L2 LINE L2 2554 3066 -247 384 103 0 0 chr9 29541377 29541435 -112730009 + (TGGA)n Simple_repeat Simple_repeat 3 60 0 464 117 13 0 chr9 29541535 29541612 -112729832 + MER51C LTR ERV1 561 638 -2 438 307 87 15 chr9 29541757 29541943 -112729501 - MIR SINE MIR -64 198 1 189 0 0 0 chr9 29542030 29542051 -112729393 + (A)n Simple_repeat Simple_repeat 1 21 0 204 317 12 12 chr9 29542611 29542693 -112728751 + GA-rich Low_complexity Low_complexity 2 83 0 185 284 157 10 chr9 29543779 29543881 -112727563 - MIR SINE MIR -75 133 17 2093 150 0 0 chr9 29544096 29544402 -112727042 + AluSx SINE Alu 1 306 -6 524 301 54 16 chr9 29544696 29544882 -112726562 + MIR SINE MIR 51 243 -19 185 128 0 26 chr9 29545994 29546033 -112725411 + (CATG)n Simple_repeat Simple_repeat 3 40 0 192 286 52 13 chr9 29546440 29546517 -112724927 - MIR SINE MIR -6 256 177 526 185 84 8 chr9 29546902 29547021 -112724423 - FLAM_C SINE Alu -15 128 1 661 227 83 61 chr9 29547106 29547384 -112724060 - MARNA DNA Mariner -160 426 143 10486 154 53 52 chr9 29547829 29550244 -112721200 + Tigger1 DNA MER2_type 1 2418 0 616 235 11 21 chr9 29550458 29550645 -112720799 + L1MC4a LINE L1 6348 6532 -1276 231 280 0 0 chr9 29550645 29550695 -112720749 + L1MC3 LINE L1 6678 6727 -1058 * 1586 205 42 13 chr9 29550688 29551073 -112720371 + L1MD3 LINE L1 6787 7182 -813 2049 186 49 72 chr9 29551127 29551736 -112719708 - LTR9 LTR ERV1 0 612 18 349 267 113 104 chr9 29552087 29552567 -112718877 - L2 LINE L2 -6 3307 2824 1719 123 0 16 chr9 29552770 29553013 -112718431 + AluSc SINE Alu 70 308 -1 1744 166 0 33 chr9 29553125 29553426 -112718018 + AluJo SINE Alu 1 291 -21 212 357 124 25 chr9 29553572 29554056 -112717388 - L2 LINE L2 -338 2976 2445 445 275 23 30 chr9 29555014 29555145 -112716299 - MIR SINE MIR -102 160 31 24 53 0 0 chr9 29555749 29555787 -112715657 + AT_rich Low_complexity Low_complexity 1 38 0 1914 185 50 82 chr9 29556100 29556177 -112715267 - MLT1E2 LTR MaLR -1 625 547 1132 126 111 0 chr9 29556177 29556384 -112715060 + MER30 DNA MER1_type 1 230 0 1914 185 50 82 chr9 29556384 29556638 -112714806 - MLT1E2 LTR MaLR -79 547 313 391 181 12 24 chr9 29556638 29556721 -112714723 - L1PB4 LINE L1 -2 6154 6073 1914 185 50 82 chr9 29556721 29556966 -112714478 - MLT1E2 LTR MaLR -313 313 62 216 342 13 13 chr9 29558881 29558960 -112712484 + L2 LINE L2 3187 3265 -7 232 259 0 19 chr9 29559703 29559757 -112711687 - L1M2 LINE L1 -6397 452 400 418 239 83 0 chr9 29560217 29560326 -112711118 - MIR SINE MIR -73 189 72 333 263 21 0 chr9 29560361 29560456 -112710988 - MLT2E LTR ERVL 0 628 532 27 29 0 0 chr9 29560476 29560510 -112710934 + AT_rich Low_complexity Low_complexity 1 34 0 198 103 0 0 chr9 29560746 29560775 -112710669 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 24 0 0 0 chr9 29561344 29561368 -112710076 + AT_rich Low_complexity Low_complexity 1 24 0 188 326 32 11 chr9 29562691 29562786 -112708658 + MIR SINE MIR 117 213 -49 777 292 42 4 chr9 29564529 29564769 -112706675 + MIR SINE MIR 13 261 -1 2372 57 3 3 chr9 29564875 29565173 -112706271 - AluY SINE Alu -13 298 1 314 320 29 0 chr9 29565298 29565401 -112706043 + MIR SINE MIR 46 151 -111 242 250 0 0 chr9 29565658 29565710 -112705734 + MER72 LTR ERV1 410 461 -261 434 195 45 78 chr9 29565786 29565945 -112705499 + LTR45B LTR ERV1 314 503 -22 10502 194 43 12 chr9 29565945 29567825 -112703619 - L1M1 LINE L1 -671 5634 3656 2888 19 0 0 chr9 29567825 29568141 -112703303 - AluYb8 SINE Alu -2 316 1 10502 194 43 12 chr9 29568141 29568655 -112702789 - L1M1 LINE L1 -2649 3656 3159 394 267 78 37 chr9 29572549 29572740 -112698704 - MIR SINE MIR -44 218 20 470 322 191 23 chr9 29572833 29573320 -112698124 + L3 LINE CR1 999 1567 -10 636 246 0 0 chr9 29576630 29576744 -112694700 - MER81 DNA DNA 0 114 1 1973 98 20 7 chr9 29577024 29577381 -112694063 - MER51C LTR ERV1 -361 279 1 241 331 27 47 chr9 29577475 29577585 -112693859 - MIR SINE MIR -24 238 130 5574 68 134 4 chr9 29577585 29578315 -112693129 + LTR12 LTR ERV1 1 825 -1 241 331 27 47 chr9 29578315 29578352 -112693092 - MIR SINE MIR -132 130 94 444 315 81 55 chr9 29578799 29579037 -112692407 - MIR SINE MIR -20 242 6 511 291 90 33 chr9 29579599 29579843 -112691601 - MIR SINE MIR -4 258 1 258 278 157 0 chr9 29579988 29580096 -112691348 - MIR SINE MIR -87 175 51 240 330 93 0 chr9 29580391 29580488 -112690956 + MIR3 SINE MIR 94 199 -9 224 274 0 0 chr9 29580845 29580896 -112690548 + L2 LINE L2 2703 2753 -561 234 0 0 0 chr9 29580934 29580960 -112690484 + (T)n Simple_repeat Simple_repeat 1 26 0 578 209 0 16 chr9 29581088 29581217 -112690227 + L1PA7 LINE L1 4397 4523 -1623 2654 68 21 6 chr9 29581218 29581554 -112689890 + L1PA7 LINE L1 5810 6150 -4 7279 64 10 2 chr9 29581562 29583206 -112688238 + L1PA7 LINE L1 4507 6154 0 472 335 18 0 chr9 29583223 29583387 -112688057 + MER63A DNA MER1_type 43 209 -1 2355 109 77 6 chr9 29583400 29583740 -112687704 - THE1B LTR MaLR 0 364 1 738 107 83 0 chr9 29583975 29584096 -112687348 - L1MA9 LINE L1 0 6312 6182 290 200 13 80 chr9 29584924 29584999 -112686445 - MER5A DNA MER1_type -111 78 9 5242 160 35 12 chr9 29585002 29585904 -112685540 - MER49 LTR ERV1 0 923 1 882 240 0 6 chr9 29586850 29587029 -112684415 - MER5B DNA MER1_type 0 178 1 295 299 120 8 chr9 29587279 29587396 -112684048 + MIR SINE MIR 62 191 -71 280 203 174 0 chr9 29588775 29588844 -112682600 - MLT1I LTR MaLR -12 397 317 428 215 84 9 chr9 29588950 29589057 -112682387 - MLT1I LTR MaLR -254 155 41 343 318 18 35 chr9 29590470 29590640 -112680804 + MIR SINE MIR 46 212 -50 433 235 154 72 chr9 29591001 29591307 -112680137 + MLT1H LTR MaLR 116 446 -103 443 301 38 23 chr9 29592083 29592216 -112679228 + L2 LINE L2 3138 3272 0 411 382 96 14 chr9 29592250 29592603 -112678841 - L3 LINE CR1 -183 1394 1013 235 162 27 27 chr9 29592658 29592732 -112678712 + (TATAA)n Simple_repeat Simple_repeat 3 76 0 312 246 21 92 chr9 29592760 29592902 -112678542 - MIR SINE MIR -66 196 65 389 333 131 22 chr9 29593124 29593391 -112678053 - L3 LINE CR1 -629 948 653 1132 140 0 91 chr9 29593662 29593883 -112677561 - AluJo SINE Alu -16 296 96 1806 166 3 10 chr9 29594070 29594365 -112677079 - AluJb SINE Alu -14 298 6 36181 40 32 2 chr9 29594781 29599212 -112672232 - L1P LINE L1 -1579 4567 2 436 340 25 10 chr9 29599399 29599599 -112671845 - MIR SINE MIR -58 204 2 910 196 22 5 chr9 29599875 29600059 -112671385 - MER53 DNA DNA -2 187 1 1626 195 84 90 chr9 29600232 29600709 -112670735 - MLT1E1 LTR MaLR -180 474 1 227 371 36 0 chr9 29602667 29602807 -112668637 + L2 LINE L2 2168 2312 -1002 22 0 0 0 chr9 29604346 29604368 -112667076 + AT_rich Low_complexity Low_complexity 1 22 0 447 19 0 0 chr9 29604375 29604427 -112667017 + (CA)n Simple_repeat Simple_repeat 2 53 0 388 152 30 0 chr9 29604432 29604498 -112666946 + L1ME4a LINE L1 5979 6046 -75 21 0 0 0 chr9 29604536 29604557 -112666887 + AT_rich Low_complexity Low_complexity 1 21 0 420 200 36 27 chr9 29604710 29604820 -112666624 - L2 LINE L2 -1370 1944 1834 2214 110 0 25 chr9 29605430 29605749 -112665695 + AluSx SINE Alu 1 311 -1 402 263 63 46 chr9 29607317 29607492 -112663952 - MIR SINE MIR -45 217 40 295 245 274 0 chr9 29607588 29607694 -112663750 + MIR SINE MIR 119 253 -9 221 324 209 7 chr9 29608627 29608775 -112662669 - MIR SINE MIR -33 229 52 243 337 0 10 chr9 29608845 29608943 -112662501 + MIR SINE MIR 154 250 -12 26533 130 17 88 chr9 29610547 29616538 -112654906 - L1PA8A LINE L1 -599 5532 1 265 250 0 0 chr9 29616541 29616609 -112654835 + CT-rich Low_complexity Low_complexity 3 70 0 571 354 45 15 chr9 29616668 29617140 -112654304 + ERVL LTR ERVL 1909 2394 -3370 1235 226 24 0 chr9 29617200 29617497 -112653947 + L1MA4 LINE L1 5983 6286 -14 2770 181 16 27 chr9 29617755 29618380 -112653064 - L1MB8 LINE L1 0 6178 5561 2294 133 83 10 chr9 29618806 29619205 -112652239 + MSTA LTR MaLR 1 428 0 6873 200 32 1 chr9 29619205 29620637 -112650807 + MSTA-int LTR MaLR 1 1476 -175 1679 166 36 25 chr9 29621061 29621417 -112650027 + THE1C LTR MaLR 14 373 -2 295 316 61 0 chr9 29621810 29621924 -112649520 + Charlie8 DNA MER1_type 100 220 -2197 740 242 139 28 chr9 29622170 29622559 -112648885 + LTR16A1 LTR ERVL 20 451 -6 274 290 0 56 chr9 29622713 29622820 -112648624 + MER117 DNA MER1_type 1 101 -96 1881 229 64 22 chr9 29622864 29623397 -112648047 - MER74B LTR ERVL -67 555 1 260 340 10 29 chr9 29623500 29623603 -112647841 + L2 LINE L2 2995 3095 -177 373 209 90 81 chr9 29623653 29623864 -112647580 - L1ME1 LINE L1 -6 6160 5948 838 180 25 62 chr9 29623996 29624240 -112647204 - L1ME1 LINE L1 -168 5998 5764 248 274 24 65 chr9 29624274 29624398 -112647046 - MER74A LTR ERVL -56 502 384 351 109 18 0 chr9 29624452 29624507 -112646937 - L1ME LINE L1 -429 5735 5680 628 208 33 29 chr9 29624507 29624857 -112646587 + L1ME LINE L1 5190 5650 -516 2068 150 0 7 chr9 29624988 29625295 -112646149 + AluSx SINE Alu 1 305 -7 640 302 68 38 chr9 29625301 29625669 -112645775 + MER93a LTR ERV1 13 391 -11 13270 195 62 30 chr9 29626280 29628680 -112642764 - L1PA14 LINE L1 -134 7465 5144 252 0 0 0 chr9 29628680 29628708 -112642736 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 13270 195 62 30 chr9 29628708 29629269 -112642175 - L1PA14 LINE L1 -2455 5144 4602 2738 17 0 0 chr9 29629269 29629569 -112641875 - AluYa5 SINE Alu -11 300 1 13270 195 62 30 chr9 29629569 29630921 -112640523 - L1PA14 LINE L1 -2997 4602 3002 10665 137 16 15 chr9 29630925 29633190 -112638254 - L1PA14 LINE L1 -5029 2552 1 751 149 91 0 chr9 29634433 29634587 -112636857 + L1MA7 LINE L1 6089 6256 -35 257 89 22 0 chr9 29634687 29634732 -112636712 + (TCTA)n Simple_repeat Simple_repeat 3 48 0 317 291 86 7 chr9 29634742 29634893 -112636551 + LTR50 LTR ERVL 2 164 -631 210 37 0 0 chr9 29634900 29634927 -112636517 + (CAA)n Simple_repeat Simple_repeat 1 27 0 316 236 68 26 chr9 29635286 29635468 -112635976 + LTR41 LTR ERVL 582 792 -3 418 277 62 23 chr9 29635470 29635600 -112635844 - L2 LINE L2 -12 3301 3167 231 179 0 0 chr9 29636004 29636043 -112635401 - MER5B DNA MER1_type -2 176 138 1407 198 59 53 chr9 29636063 29636421 -112635023 + MLT1A1 LTR MaLR 1 360 -5 562 219 0 0 chr9 29636424 29636529 -112634915 + MER5B DNA MER1_type 74 178 0 220 288 125 0 chr9 29638299 29638379 -112633065 + MIR SINE MIR 16 105 -103 432 346 65 30 chr9 29638399 29638630 -112632814 - L3 LINE CR1 -43 1534 1296 184 291 70 0 chr9 29639054 29639140 -112632304 + L2 LINE L2 3134 3225 -88 772 199 73 37 chr9 29639724 29639915 -112631529 - MER58A DNA MER1_type -26 198 1 645 242 143 0 chr9 29639923 29640084 -112631360 + MER5A DNA MER1_type 1 184 -5 210 298 0 18 chr9 29640933 29640990 -112630454 - L3 LINE CR1 -96 1481 1426 204 261 0 0 chr9 29640999 29641045 -112630399 + L2 LINE L2 3265 3310 -3 591 306 64 9 chr9 29641191 29641410 -112630034 - MIR SINE MIR -27 235 5 230 263 181 15 chr9 29642627 29642760 -112628684 - L2 LINE L2 0 3313 3159 197 211 26 0 chr9 29642988 29643026 -112628418 - L2 LINE L2 -15 3257 3219 451 307 109 33 chr9 29643245 29643548 -112627896 + MLT1I LTR MaLR 50 375 -34 215 380 65 0 chr9 29643707 29643815 -112627629 + L2 LINE L2 3158 3272 0 6604 83 6 2 chr9 29644049 29644416 -112627028 + L1PA10 LINE L1 4759 5123 -1045 2068 121 4 4 chr9 29644416 29644697 -112626747 + AluSp SINE Alu 1 281 -32 267 31 0 0 chr9 29644699 29644731 -112626713 + (GAAAA)n Simple_repeat Simple_repeat 4 35 0 6604 83 6 2 chr9 29644731 29645794 -112625650 + L1PA10 LINE L1 5123 6167 -1 182 337 33 43 chr9 29646245 29646337 -112625107 - L2 LINE L2 -2819 495 405 276 278 52 43 chr9 29647467 29647582 -112623862 + L2 LINE L2 3156 3271 -1 277 268 113 10 chr9 29647602 29647699 -112623745 - L2 LINE L2 -13 3259 3153 201 256 0 0 chr9 29648272 29648315 -112623129 + L2 LINE L2 3139 3181 -91 226 200 80 0 chr9 29648617 29648667 -112622777 + MER91C DNA MER1_type 48 101 -39 202 347 67 0 chr9 29648900 29648975 -112622469 + L2 LINE L2 3188 3267 -5 396 256 200 0 chr9 29649151 29649276 -112622168 + MIR SINE MIR 20 169 -93 673 198 136 11 chr9 29649464 29649641 -112621803 - MER3 DNA MER1_type -1 208 10 315 240 202 0 chr9 29650757 29650886 -112620558 - L1ME4a LINE L1 0 6121 5967 253 241 321 0 chr9 29651900 29652012 -112619432 + MIR SINE MIR 59 206 -56 852 225 13 66 chr9 29652294 29652521 -112618923 - MER20 DNA MER1_type -4 215 1 309 278 202 17 chr9 29653249 29653422 -112618022 - MIR SINE MIR -8 254 50 405 280 88 8 chr9 29653772 29653897 -112617547 - L2 LINE L2 -6 3266 3132 560 313 61 19 chr9 29654965 29655275 -112616169 - MLT1I LTR MaLR -60 349 27 581 298 53 6 chr9 29655309 29655480 -112615964 + MIR SINE MIR 78 256 -6 343 314 0 0 chr9 29656956 29657058 -112614386 - MIR SINE MIR -74 188 87 246 189 0 0 chr9 29657077 29657124 -112614320 + MIR SINE MIR 104 151 -57 900 239 39 10 chr9 29657135 29657340 -112614104 - MER20 DNA MER1_type -4 215 5 4826 60 5 2 chr9 29657505 29658120 -112613324 + L1PA8 LINE L1 5542 6158 -14 183 337 24 36 chr9 29658121 29658204 -112613240 + MIR SINE MIR 148 229 -33 262 233 35 23 chr9 29659424 29659510 -112611934 + MER103 DNA DNA 62 148 -18 2157 191 56 34 chr9 29660131 29660687 -112610757 - LTR29 LTR ERV1 -54 568 1 4074 82 11 5 chr9 29660820 29661371 -112610073 + MER41A LTR ERV1 1 554 0 1134 281 42 17 chr9 29663188 29663590 -112607854 - LTR16B LTR ERVL 0 464 53 1226 310 69 30 chr9 29663726 29664332 -112607112 + L2 LINE L2 73 702 -2612 1675 268 76 107 chr9 29664341 29665039 -112606405 + L2 LINE L2 1481 2124 -1190 2269 104 0 13 chr9 29665039 29665338 -112606106 - AluSx SINE Alu -17 295 1 1675 268 76 107 chr9 29665338 29665935 -112605509 + L2 LINE L2 2124 2737 -577 627 95 9 35 chr9 29666722 29666838 -112604606 + MSTA-int LTR MaLR 1468 1580 0 1830 151 143 11 chr9 29666838 29667216 -112604228 + MSTA LTR MaLR 1 428 0 274 255 71 51 chr9 29667329 29667427 -112604017 + L2 LINE L2 3173 3272 0 1841 172 40 36 chr9 29667448 29667995 -112603449 + MLT2A2 LTR ERVL 1 552 -2 395 314 208 20 chr9 29668166 29668469 -112602975 + L3 LINE CR1 1213 1572 -5 24 67 0 0 chr9 29669702 29669747 -112601697 + AT_rich Low_complexity Low_complexity 1 45 0 1975 128 25 7 chr9 29670815 29671097 -112600347 + AluSc SINE Alu 1 287 -22 3765 112 102 0 chr9 29671151 29671785 -112599659 + L1P LINE L1 3943 4641 -1505 1047 81 0 0 chr9 29671788 29671937 -112599507 - L1PA8 LINE L1 -78 6094 5946 317 303 0 38 chr9 29672360 29672492 -112598952 + L1ME LINE L1 5604 5730 -391 2338 104 3 0 chr9 29673257 29673565 -112597879 + AluSg SINE Alu 1 309 -1 326 328 40 50 chr9 29673956 29674154 -112597290 + L2 LINE L2 3118 3313 0 379 207 51 12 chr9 29674690 29674787 -112596657 + MIR3 SINE MIR 57 159 -49 244 232 62 45 chr9 29674826 29674938 -112596506 + MER117 DNA MER1_type 2 115 -82 180 374 55 11 chr9 29675900 29675991 -112595453 + L2 LINE L2 3005 3099 -173 281 24 49 0 chr9 29676048 29676089 -112595355 + (TTTTG)n Simple_repeat Simple_repeat 2 44 0 453 271 54 50 chr9 29677511 29677732 -112593712 - L1ME4a LINE L1 -47 6074 5853 763 190 11 82 chr9 29677740 29677924 -112593520 - MER58B DNA MER1_type 0 341 171 1160 220 20 57 chr9 29679026 29679380 -112592064 - MER58B DNA MER1_type 0 341 1 240 35 0 0 chr9 29679545 29679574 -112591870 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 248 248 139 20 chr9 29680155 29680256 -112591188 + L2 LINE L2 3193 3305 -8 28 48 0 0 chr9 29681439 29681481 -112589963 + AT_rich Low_complexity Low_complexity 1 42 0 397 214 97 10 chr9 29682277 29682380 -112589064 - MER94 DNA DNA -19 115 4 276 138 69 0 chr9 29682738 29682796 -112588648 - MER96B DNA MER1_type? -1 416 355 352 303 107 8 chr9 29684667 29684789 -112586655 + L2 LINE L2 3137 3270 -2 8263 137 13 5 chr9 29685490 29686961 -112584483 - L1P LINE L1 -1859 4287 2805 2828 198 19 68 chr9 29686971 29687934 -112583510 - L1P3 LINE L1 -4735 1140 571 1083 111 0 0 chr9 29688664 29688817 -112582627 - MER41C LTR ERV1 -401 153 1 482 302 73 0 chr9 29688978 29689170 -112582274 - MIR SINE MIR -56 206 1 2408 194 36 27 chr9 29689315 29689868 -112581576 + MER74A LTR ERVL 1 558 0 189 213 0 0 chr9 29690606 29690653 -112580791 + GA-rich Low_complexity Low_complexity 6 52 0 664 213 0 22 chr9 29690727 29690863 -112580581 + FLAM_A SINE Alu 1 133 0 383 273 93 48 chr9 29691032 29691386 -112580058 + HAL1b LINE L1 236 500 -848 21 36 0 0 chr9 29691637 29691665 -112579779 + AT_rich Low_complexity Low_complexity 1 28 0 1701 157 20 17 chr9 29691819 29692112 -112579332 + AluJb SINE Alu 2 295 -17 269 266 237 30 chr9 29693386 29693555 -112577889 + MIR SINE MIR 14 217 -45 291 114 0 0 chr9 29693737 29693781 -112577663 + (TG)n Simple_repeat Simple_repeat 1 44 0 348 197 113 63 chr9 29693909 29694051 -112577393 - L1MEc LINE L1 -4614 1782 1634 4306 202 44 25 chr9 29696002 29696216 -112575228 - L1MD2 LINE L1 -1 6358 6149 369 43 0 0 chr9 29696216 29696263 -112575181 + (TC)n Simple_repeat Simple_repeat 2 48 0 4306 202 44 25 chr9 29696263 29697273 -112574171 - L1MD2 LINE L1 -210 6149 5118 286 55 0 73 chr9 29697275 29697330 -112574114 + (TTCC)n Simple_repeat Simple_repeat 3 53 0 461 162 0 0 chr9 29697335 29697409 -112574035 - AluJb SINE Alu -60 252 179 206 213 0 0 chr9 29697431 29697478 -112573966 + G-rich Low_complexity Low_complexity 1 47 0 8806 114 4 64 chr9 29697578 29699206 -112572238 - L1P LINE L1 -1386 4760 3230 695 102 62 55 chr9 29699211 29699339 -112572105 + L1PA11 LINE L1 6042 6170 -4 753 312 48 45 chr9 29699460 29699797 -112571647 + L2 LINE L2 2935 3272 0 2711 108 0 12 chr9 29700443 29700861 -112570583 + LTR46-int LTR ERV1 2957 3369 -3616 221 333 0 32 chr9 29701226 29701319 -112570125 - L2 LINE L2 -50 3222 3133 2166 144 28 0 chr9 29701396 29701750 -112569694 + THE1B LTR MaLR 1 364 0 27 29 0 0 chr9 29702129 29702163 -112569281 + AT_rich Low_complexity Low_complexity 1 34 0 370 266 86 22 chr9 29702238 29702377 -112569067 - MIR SINE MIR -10 252 105 226 250 10 10 chr9 29702862 29702962 -112568482 + CT-rich Low_complexity Low_complexity 4 103 0 183 42 0 0 chr9 29702969 29702993 -112568451 + (TCCA)n Simple_repeat Simple_repeat 2 25 0 2094 109 42 0 chr9 29703678 29704009 -112567435 + L1PA13 LINE L1 5800 6144 -19 304 272 29 10 chr9 29704876 29704979 -112566465 - L2 LINE L2 -192 3080 2976 480 244 25 125 chr9 29705021 29705300 -112566144 + MIR SINE MIR 12 262 0 2514 83 37 35 chr9 29706041 29706415 -112565029 - THE1C LTR MaLR 0 375 1 354 302 56 8 chr9 29706512 29706638 -112564806 - MIR SINE MIR -116 146 15 805 255 159 34 chr9 29706806 29707061 -112564383 + MER69 DNA AcHobo 137 457 -2069 1406 171 98 14 chr9 29707061 29707348 -112564096 - AluJb SINE Alu -1 311 1 805 255 159 34 chr9 29707348 29707476 -112563968 + MER69 DNA AcHobo 457 568 -1958 * 1123 231 111 6 chr9 29707464 29707940 -112563504 + MER69 DNA AcHobo 2000 2525 -1 2682 138 5 14 chr9 29707956 29708399 -112563045 - L1PA16 LINE L1 -10 6156 5718 1704 95 67 21 chr9 29708927 29709212 -112562232 - MER1B DNA MER1_type 0 339 42 708 265 51 10 chr9 29709658 29709854 -112561590 + MIR SINE MIR 38 241 -21 237 340 21 21 chr9 29709885 29709979 -112561465 + L2 LINE L2 2973 3066 -206 296 291 75 22 chr9 29711207 29711341 -112560103 + L3 LINE CR1 1223 1363 -214 408 194 8 108 chr9 29711357 29711486 -112559958 - MER94 DNA DNA -18 116 1 239 256 37 24 chr9 29711617 29711699 -112559745 - MER5B DNA MER1_type -79 99 17 36 0 0 0 chr9 29711811 29711847 -112559597 + AT_rich Low_complexity Low_complexity 1 36 0 839 195 0 6 chr9 29711847 29712016 -112559428 - L1PB1 LINE L1 -4 6147 5980 5552 87 12 4 chr9 29712526 29713702 -112557742 - L1P3 LINE L1 -442 5730 4552 336 349 54 0 chr9 29713947 29714096 -112557348 - L2 LINE L2 -1 3271 3115 314 320 178 18 chr9 29714791 29715016 -112556428 + L1ME LINE L1 5590 5850 -271 598 187 41 142 chr9 29715080 29715326 -112556118 - L1MD1 LINE L1 -11 6231 6011 948 223 27 0 chr9 29715327 29715583 -112555861 - L1 LINE L1 -2882 3264 3002 2082 133 23 0 chr9 29715586 29715886 -112555558 - AluSx SINE Alu -5 307 1 8413 163 14 57 chr9 29715904 29717890 -112553554 + L1M1 LINE L1 3566 5472 -748 250 304 88 47 chr9 29718228 29718376 -112553068 - MIR3 SINE MIR -6 202 49 461 322 17 17 chr9 29718393 29718570 -112552874 + MER5B DNA MER1_type 1 177 -1 205 348 75 25 chr9 29719912 29720073 -112551371 - L3 LINE CR1 -62 1515 1347 486 288 62 0 chr9 29720101 29720247 -112551197 - MER63 DNA MER1_type -276 786 6 229 315 0 22 chr9 29720252 29720344 -112551100 - L3 LINE CR1 -263 1314 1225 227 335 118 19 chr9 29720396 29720557 -112550887 + MIR SINE MIR 86 262 0 1414 226 160 63 chr9 29721071 29721641 -112549803 + MLT1E1 LTR MaLR 23 647 -7 187 320 122 27 chr9 29721649 29721796 -112549648 - L3 LINE CR1 -329 1248 1088 229 283 50 50 chr9 29722842 29722941 -112548503 - MIR SINE MIR -65 143 45 21 0 0 0 chr9 29723023 29723044 -112548400 + AT_rich Low_complexity Low_complexity 1 21 0 184 218 91 36 chr9 29723264 29723319 -112548125 - L2 LINE L2 -1 3271 3214 433 192 23 100 chr9 29723330 29723460 -112547984 - Charlie7 DNA MER1_type -474 2138 2019 935 211 31 75 chr9 29723474 29723792 -112547652 - Charlie7 DNA MER1_type -814 1798 1495 13401 116 18 16 chr9 29723951 29726011 -112545433 - LTR46-int LTR ERV1 -1425 5560 3498 231 61 0 0 chr9 29726300 29726333 -112545111 + (TC)n Simple_repeat Simple_repeat 1 33 0 813 186 169 0 chr9 29726419 29726591 -112544853 - MER3 DNA MER1_type -8 201 1 1652 239 70 25 chr9 29727122 29727637 -112543807 + MER68 LTR ERV1 1 538 -24 204 176 0 0 chr9 29727832 29727866 -112543578 + L2 LINE L2 3264 3297 -16 261 75 0 0 chr9 29729956 29729996 -112541448 + (A)n Simple_repeat Simple_repeat 1 40 0 376 239 132 48 chr9 29730015 29730182 -112541262 + MIR SINE MIR 50 230 -32 289 250 12 0 chr9 29731624 29731704 -112539740 - LTR58 LTR ERV1 -249 430 350 508 256 30 54 chr9 29734181 29734349 -112537095 + MIR3 SINE MIR 31 194 -14 2661 156 66 10 chr9 29734774 29735262 -112536182 - MLT2B2 LTR ERVL 0 515 1 1972 154 170 29 chr9 29735940 29736394 -112535050 + MLT2B1 LTR ERVL 1 518 -2 2146 141 123 5 chr9 29737159 29737542 -112533902 + MSTA LTR MaLR 1 428 0 28 0 0 0 chr9 29738166 29738194 -112533250 + AT_rich Low_complexity Low_complexity 1 28 0 297 0 0 0 chr9 29738307 29738340 -112533104 + (CA)n Simple_repeat Simple_repeat 2 34 0 2184 263 94 33 chr9 29738372 29739634 -112531810 + L1MEc LINE L1 745 2083 -4313 180 0 54 54 chr9 29740292 29740329 -112531115 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 2436 52 0 0 chr9 29740331 29740621 -112530823 - AluY SINE Alu -21 290 1 261 193 53 0 chr9 29741229 29741286 -112530158 - MIR SINE MIR -96 166 107 315 0 0 0 chr9 29742085 29742120 -112529324 + (TA)n Simple_repeat Simple_repeat 1 35 0 334 268 113 7 chr9 29742212 29742354 -112529090 - MIR SINE MIR 0 262 106 220 349 9 19 chr9 29742594 29742700 -112528744 - MER5A DNA MER1_type -14 175 71 302 357 77 32 chr9 29743410 29743721 -112527723 + L3 LINE CR1 142 466 -1111 313 331 22 29 chr9 29744214 29744353 -112527091 - L1ME3 LINE L1 -231 5931 5794 253 216 0 0 chr9 29744421 29744472 -112526972 + MER33 DNA MER1_type 41 91 -233 303 205 58 42 chr9 29744487 29744620 -112526824 - L1ME3 LINE L1 -388 5776 5643 382 320 17 6 chr9 29744785 29744963 -112526481 - L1M4 LINE L1 -1470 4676 4497 422 295 97 15 chr9 29745288 29745762 -112525682 - L1M4 LINE L1 -2464 3682 3170 25 51 0 0 chr9 29747058 29747097 -112524347 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr9 29748058 29748079 -112523365 + AT_rich Low_complexity Low_complexity 1 21 0 216 0 0 0 chr9 29748743 29748767 -112522677 + (T)n Simple_repeat Simple_repeat 1 24 0 377 353 153 12 chr9 29750368 29750617 -112520827 + L3 LINE CR1 1032 1315 -262 192 250 115 73 chr9 29750793 29750889 -112520555 - L2 LINE L2 -6 3307 3208 188 236 139 0 chr9 29751398 29751470 -112519974 - MIR SINE MIR -34 228 147 1292 189 100 17 chr9 29751938 29752297 -112519147 - Charlie2 DNA MER1_type -618 2244 1856 255 317 29 0 chr9 29752299 29752403 -112519041 - Charlie2 DNA MER1_type -2537 325 219 344 171 57 34 chr9 29752406 29752494 -112518950 + MIR SINE MIR 106 195 -67 709 205 160 65 chr9 29752791 29753098 -112518346 - MLT1C LTR MaLR -131 336 1 194 337 59 10 chr9 29754232 29754333 -112517111 - L2 LINE L2 -40 3273 3168 7180 39 10 2 chr9 29755495 29756625 -112514819 - L1PA5 LINE L1 -15 6139 5002 323 55 0 55 chr9 29756918 29756973 -112514471 + (T)n Simple_repeat Simple_repeat 1 52 0 6102 97 11 5 chr9 29756996 29758121 -112513323 - L1PB1 LINE L1 0 6151 5027 477 0 0 0 chr9 29759319 29759372 -112512072 + (GGAA)n Simple_repeat Simple_repeat 3 55 0 745 243 88 68 chr9 29759384 29759538 -112511906 + MIR SINE MIR 2 164 -98 1736 54 54 17 chr9 29759538 29759777 -112511667 - AluY SINE Alu 0 311 64 745 243 88 68 chr9 29759777 29759873 -112511571 + MIR SINE MIR 164 257 -5 24 0 0 0 chr9 29760299 29760323 -112511121 + AT_rich Low_complexity Low_complexity 1 24 0 314 273 129 22 chr9 29760704 29760843 -112510601 + MIR3 SINE MIR 38 191 -17 833 299 61 30 chr9 29761925 29762319 -112509125 + MLT1I LTR MaLR 1 406 -3 5731 108 28 3 chr9 29762602 29764045 -112507399 + L1PA13 LINE L1 4686 6159 -4 1760 191 22 19 chr9 29765402 29765768 -112505676 - L1MC1 LINE L1 -1 6332 5966 750 53 0 0 chr9 29765768 29765862 -112505582 - AluSg/x SINE Alu -18 294 201 3929 193 17 12 chr9 29765862 29767231 -112504213 - L1MC1 LINE L1 -408 5925 4546 1558 210 58 6 chr9 29767231 29767578 -112503866 + MLT1A1 LTR MaLR 1 365 0 3929 193 17 12 chr9 29767578 29767608 -112503836 - L1MC1 LINE L1 -1787 4546 4518 819 214 22 39 chr9 29767612 29767841 -112503603 - L1MC1 LINE L1 -1922 4224 4000 1622 153 0 0 chr9 29767864 29768099 -112503345 - AluSx SINE Alu -57 255 21 1316 253 51 0 chr9 29768104 29768475 -112502969 - L1MC1 LINE L1 -2451 3695 3306 508 305 103 14 chr9 29768478 29768701 -112502743 + MLT1K LTR MaLR 346 588 0 255 232 0 18 chr9 29770628 29770684 -112500760 + (TG)n Simple_repeat Simple_repeat 2 56 0 294 136 37 0 chr9 29771501 29771582 -112499862 + CT-rich Low_complexity Low_complexity 2 85 0 225 281 146 12 chr9 29771738 29771820 -112499624 + L3 LINE CR1 1368 1460 -117 233 192 0 0 chr9 29771820 29771872 -112499572 - L1ME LINE L1 -470 5694 5643 4563 249 56 14 chr9 29771930 29773646 -112497798 - L1ME LINE L1 -644 5520 3742 521 256 104 15 chr9 29773802 29774122 -112497322 + L1MEc LINE L1 2014 2317 -3898 198 91 0 0 chr9 29774193 29774226 -112497218 + (TCTA)n Simple_repeat Simple_repeat 4 36 0 262 267 0 76 chr9 29774245 29774350 -112497094 - L1M4 LINE L1 -976 5170 5074 5132 153 27 19 chr9 29774464 29775894 -112495550 + L1PB4 LINE L1 4716 6156 0 2123 101 3 22 chr9 29775928 29776244 -112495200 + AluSg SINE Alu 1 310 0 602 257 77 50 chr9 29777172 29777534 -112493910 + L1ME LINE L1 5282 5653 -468 27 0 0 0 chr9 29779100 29779127 -112492317 + AT_rich Low_complexity Low_complexity 1 27 0 273 299 117 30 chr9 29779285 29779482 -112491962 - L1ME LINE L1 -287 5834 5621 339 324 20 0 chr9 29780609 29780711 -112490733 - ERVL LTR ERVL -463 5301 5198 292 344 132 21 chr9 29780969 29781257 -112490187 - ERVL LTR ERVL -865 4899 4580 429 305 53 102 chr9 29781288 29781852 -112489592 - L2 LINE L2 -209 3063 2532 853 316 193 10 chr9 29781853 29782650 -112488794 - L2 LINE L2 -1096 2218 1276 268 323 54 38 chr9 29782943 29783129 -112488315 + L2 LINE L2 2788 2976 -338 203 311 67 44 chr9 29783328 29783508 -112487936 - L2 LINE L2 -1116 2198 2015 831 317 134 15 chr9 29785063 29785518 -112485926 + L2 LINE L2 2605 3176 -137 2048 152 24 24 chr9 29785518 29785892 -112485552 - THE1C LTR MaLR 0 375 2 831 317 134 15 chr9 29785892 29786049 -112485395 + L2 LINE L2 3176 3313 0 639 287 57 18 chr9 29786329 29786611 -112484833 + L1ME4a LINE L1 5508 5800 -321 21 36 0 0 chr9 29786670 29786698 -112484746 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr9 29786826 29786849 -112484595 + AT_rich Low_complexity Low_complexity 1 23 0 257 211 35 35 chr9 29786963 29787020 -112484424 - L2 LINE L2 -3 3269 3213 302 281 37 0 chr9 29787458 29787540 -112483904 + L2 LINE L2 3227 3311 -2 306 275 0 12 chr9 29789306 29789386 -112482058 + GA-rich Low_complexity Low_complexity 3 81 0 302 329 98 21 chr9 29789450 29789593 -112481851 + L1ME4a LINE L1 5968 6121 0 1322 222 37 53 chr9 29790864 29791243 -112480201 + MLT1A2 LTR MaLR 2 374 0 23 0 0 0 chr9 29792232 29792255 -112479189 + AT_rich Low_complexity Low_complexity 1 23 0 367 244 152 24 chr9 29792511 29792675 -112478769 - MIR SINE MIR -76 186 2 25 31 0 0 chr9 29794228 29794260 -112477184 + AT_rich Low_complexity Low_complexity 1 32 0 2100 91 0 7 chr9 29795254 29795529 -112475915 + AluSc SINE Alu 1 273 -36 198 0 0 0 chr9 29795531 29795553 -112475891 + (GAAAA)n Simple_repeat Simple_repeat 2 23 0 363 258 45 8 chr9 29800240 29800372 -112471072 + MER103 DNA DNA 8 144 -22 420 307 80 62 chr9 29804882 29805107 -112466337 + MIR SINE MIR 2 230 -32 430 272 123 32 chr9 29806102 29806418 -112465026 + L1ME4a LINE L1 4125 4469 -1677 21 0 0 0 chr9 29806466 29806487 -112464957 + AT_rich Low_complexity Low_complexity 1 21 0 340 333 161 19 chr9 29806535 29807006 -112464438 + L1ME4a LINE L1 4628 5165 -981 317 343 102 46 chr9 29807115 29807398 -112464046 + L1ME4a LINE L1 5349 5647 -2161 2250 110 68 11 chr9 29807554 29807909 -112463535 + THE1C LTR MaLR 1 375 0 435 247 44 28 chr9 29807971 29808153 -112463291 + L1ME4a LINE L1 5934 6118 -3 3633 164 52 46 chr9 29808167 29808783 -112462661 - L1MA4A LINE L1 -5 6306 5641 613 73 12 0 chr9 29808783 29808865 -112462579 - THE1A LTR MaLR 0 355 273 3633 164 52 46 chr9 29808865 29809180 -112462264 - L1MA4A LINE L1 -670 5641 5329 1870 234 69 66 chr9 29809453 29810035 -112461409 - L1ME3 LINE L1 -41 6190 5611 2323 65 7 13 chr9 29810035 29810341 -112461103 - AluSp SINE Alu -9 304 1 1870 234 69 66 chr9 29810341 29810910 -112460534 - L1ME3 LINE L1 -620 5611 5045 1616 177 21 14 chr9 29810910 29811198 -112460246 + AluJo SINE Alu 1 290 -22 1870 234 69 66 chr9 29811198 29811390 -112460054 - L1ME3 LINE L1 -1186 5045 4855 2151 113 0 3 chr9 29811390 29811692 -112459752 - AluSc SINE Alu -8 301 1 1870 234 69 66 chr9 29811692 29811946 -112459498 - L1ME3 LINE L1 -1376 4855 4583 3983 251 64 36 chr9 29811959 29812545 -112458899 - L1ME3 LINE L1 -1890 4325 3757 1680 172 36 30 chr9 29812545 29812882 -112458562 + MER44D DNA MER2_type 1 609 0 3983 251 64 36 chr9 29812882 29814151 -112457293 - L1ME3 LINE L1 -2458 3757 2417 580 255 77 34 chr9 29814669 29815057 -112456387 - L1ME3 LINE L1 -3945 2451 2047 1703 148 28 1 chr9 29815059 29815399 -112456045 + MER47A DNA MER2_type 2 366 0 252 274 53 42 chr9 29815408 29815503 -112455941 - L1ME3 LINE L1 -4363 2033 1938 752 348 85 22 chr9 29815504 29816045 -112455399 - L2 LINE L2 -343 2971 2397 180 319 21 0 chr9 29817175 29817222 -112454222 + MIR SINE MIR 45 92 -170 339 272 39 19 chr9 29820049 29820152 -112451292 + MIR SINE MIR 103 207 -55 2848 88 0 0 chr9 29820462 29820850 -112450594 + L1PA8 LINE L1 5785 6172 0 410 117 26 26 chr9 29821273 29821350 -112450094 - MLT1J1 LTR MaLR -19 427 351 * 784 301 118 20 chr9 29821332 29821628 -112449816 - MLT1J2 LTR MaLR -123 327 3 223 352 162 0 chr9 29822184 29822289 -112449155 - L2 LINE L2 -8 3264 3143 500 272 123 48 chr9 29822339 29822736 -112448708 + L1ME4a LINE L1 5675 6101 -20 30 45 0 0 chr9 29822946 29822990 -112448454 + AT_rich Low_complexity Low_complexity 1 44 0 590 277 17 23 chr9 29823610 29823787 -112447657 - MIR SINE MIR -59 203 28 225 0 0 0 chr9 29823801 29823826 -112447618 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 377 252 61 29 chr9 29823830 29823996 -112447448 - MIR SINE MIR -51 157 14 282 281 47 23 chr9 29824227 29824355 -112447089 + MER94 DNA DNA 1 131 -3 210 338 148 24 chr9 29824963 29825173 -112446271 + MIR SINE MIR 21 256 -6 22 0 0 0 chr9 29825179 29825201 -112446243 + AT_rich Low_complexity Low_complexity 1 22 0 228 316 8 26 chr9 29825280 29825397 -112446047 + CT-rich Low_complexity Low_complexity 2 116 0 1906 142 0 23 chr9 29825486 29825788 -112445656 - AluSx SINE Alu -17 295 1 1009 238 26 27 chr9 29826965 29827327 -112444117 + MLT2B2 LTR ERVL 106 515 0 302 271 21 42 chr9 29827429 29827525 -112443919 - MER5A DNA MER1_type -83 106 13 428 256 28 126 chr9 29829453 29829668 -112441776 + MER63A DNA MER1_type 12 205 -5 803 202 50 55 chr9 29830089 29830307 -112441137 + MIR SINE MIR 24 240 -22 218 246 16 16 chr9 29830404 29830465 -112440979 + MER5A DNA MER1_type 108 168 -21 514 292 139 5 chr9 29830588 29830790 -112440654 - MIR SINE MIR -30 232 4 1973 195 0 11 chr9 29832440 29832809 -112438635 + MLT1A1 LTR MaLR 1 365 0 516 314 167 10 chr9 29832989 29833193 -112438251 - MIR SINE MIR -15 247 12 552 323 100 23 chr9 29835312 29835532 -112435912 - MIR SINE MIR -6 256 20 411 73 0 0 chr9 29835634 29835689 -112435755 + (A)n Simple_repeat Simple_repeat 1 55 0 238 254 32 0 chr9 29836496 29836559 -112434885 + (CATA)n Simple_repeat Simple_repeat 2 66 0 892 257 45 29 chr9 29836561 29836806 -112434638 - MIR SINE MIR -6 256 8 404 269 80 51 chr9 29836821 29836996 -112434448 + MIR SINE MIR 33 212 -50 215 325 0 25 chr9 29837548 29837628 -112433816 - L2 LINE L2 -6 3307 3230 196 333 0 60 chr9 29837653 29837737 -112433707 + MIR SINE MIR 68 146 -62 * 232 339 59 59 chr9 29837735 29837853 -112433591 - MIR3 SINE MIR -78 130 13 435 183 97 0 chr9 29838895 29838988 -112432456 - MIR SINE MIR -77 185 84 289 255 62 90 chr9 29839508 29839653 -112431791 + MIR SINE MIR 10 150 -112 213 320 48 10 chr9 29841146 29841249 -112430195 + MIR SINE MIR 82 188 -74 270 179 0 0 chr9 29841376 29841432 -112430012 + CT-rich Low_complexity Low_complexity 3 58 0 475 216 137 10 chr9 29841436 29841538 -112429906 - FLAM_A SINE Alu -18 115 1 6742 45 11 1 chr9 29841967 29842806 -112428638 - L1PA5 LINE L1 -14 6140 5294 809 301 39 27 chr9 29842837 29843169 -112428275 + L2 LINE L2 2361 2696 -618 243 338 208 22 chr9 29843176 29843493 -112427951 + L2 LINE L2 2883 3258 -55 339 25 0 0 chr9 29843545 29843585 -112427859 + (TG)n Simple_repeat Simple_repeat 1 40 0 501 325 108 10 chr9 29843785 29843988 -112427456 - MIR SINE MIR -28 234 12 403 150 12 12 chr9 29844255 29844335 -112427109 + MER116 DNA Mariner 1 80 0 360 315 98 16 chr9 29844690 29844874 -112426570 - MIR SINE MIR -61 201 3 224 292 111 0 chr9 29846491 29846563 -112424881 - L2 LINE L2 -6 3307 3228 23 54 0 0 chr9 29846702 29846739 -112424705 + AT_rich Low_complexity Low_complexity 1 37 0 814 170 12 55 chr9 29847491 29847656 -112423788 + AluJb SINE Alu 137 294 -18 2351 195 68 8 chr9 29847899 29848514 -112422930 + L1MA4 LINE L1 2629 3280 -2866 1195 180 138 22 chr9 29848521 29848974 -112422470 + LTR60 LTR ERV1 1 577 -9 4463 177 52 23 chr9 29849140 29850122 -112421322 + L1MA4 LINE L1 3288 4297 -1849 * 4928 140 55 11 chr9 29850121 29851004 -112420440 + L1MA4 LINE L1 5379 6300 0 247 348 59 0 chr9 29851505 29851623 -112419821 + MIR SINE MIR 17 141 -121 188 267 0 0 chr9 29851694 29851739 -112419705 - L2 LINE L2 -11 3261 3217 22 35 0 0 chr9 29852104 29852133 -112419311 + AT_rich Low_complexity Low_complexity 1 29 0 863 226 60 154 chr9 29852148 29852596 -112418848 + MLT1G LTR MaLR 1 403 -139 1869 137 6 38 chr9 29852596 29852910 -112418534 + AluSx SINE Alu 1 304 -8 863 226 60 154 chr9 29852910 29852940 -112418504 + MLT1G LTR MaLR 403 434 -108 324 0 0 0 chr9 29853536 29853572 -112417872 + (GA)n Simple_repeat Simple_repeat 2 37 0 390 40 0 0 chr9 29853950 29854000 -112417444 - MADE1 DNA Mariner -30 50 1 230 250 0 0 chr9 29854467 29854511 -112416933 + polypurine Low_complexity Low_complexity 3 46 0 207 315 14 14 chr9 29854704 29854777 -112416667 - L2 LINE L2 -4 3268 3196 301 261 17 119 chr9 29855524 29855700 -112415744 - MIR3 SINE MIR -32 176 19 4336 164 26 49 chr9 29856775 29857426 -112414018 + MER6 DNA MER2_type 4 668 -197 465 34 0 0 chr9 29857426 29857485 -112413959 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 4336 164 26 49 chr9 29857485 29857571 -112413873 + MER6 DNA MER2_type 668 754 -111 2049 64 0 12 chr9 29857571 29857821 -112413623 - AluY SINE Alu -25 286 40 4336 164 26 49 chr9 29857821 29857964 -112413480 + MER6 DNA MER2_type 754 865 0 31 26 0 0 chr9 29858374 29858412 -112413032 + AT_rich Low_complexity Low_complexity 1 38 0 225 379 26 17 chr9 29858414 29858530 -112412914 + L2 LINE L2 3148 3264 -8 197 333 0 0 chr9 29858734 29858782 -112412662 + L2 LINE L2 3246 3293 -20 24 32 0 0 chr9 29859813 29859844 -112411600 + AT_rich Low_complexity Low_complexity 1 31 0 338 282 0 0 chr9 29861028 29861099 -112410345 - L2 LINE L2 0 3313 3243 186 284 0 45 chr9 29861221 29861288 -112410156 - MIR3 SINE MIR -4 204 141 3728 200 77 21 chr9 29862523 29864268 -112407176 + L1MB7 LINE L1 4092 5936 -242 262 164 0 0 chr9 29864284 29864338 -112407106 + L1MB7 LINE L1 6079 6132 -46 1574 157 23 33 chr9 29864766 29865065 -112406379 + AluJo SINE Alu 1 296 -16 566 286 33 22 chr9 29866982 29867164 -112404280 - MER5A DNA MER1_type -5 184 1 416 244 65 8 chr9 29868710 29868833 -112402611 - L1MC/D LINE L1 -433 5731 5602 276 212 71 47 chr9 29868872 29868957 -112402487 + L1ME1 LINE L1 6062 6148 -18 290 323 123 62 chr9 29869915 29870191 -112401253 - L2 LINE L2 0 3313 3021 9288 178 29 23 chr9 29870610 29873011 -112398433 + L1PA15 LINE L1 3318 5719 -446 2135 144 41 0 chr9 29873022 29873384 -112398060 + L1PA15 LINE L1 5787 6163 -2 271 284 23 23 chr9 29873920 29874008 -112397436 + MIR3 SINE MIR 73 160 -48 227 352 34 34 chr9 29874004 29874180 -112397264 + MER5A DNA MER1_type 13 188 -1 * 3659 262 85 25 chr9 29874324 29874383 -112397061 - L1MCb LINE L1 -2471 4093 4039 1621 158 0 0 chr9 29874383 29874682 -112396762 + AluSx SINE Alu 38 336 0 3659 262 85 25 chr9 29874682 29876735 -112394709 - L1MCb LINE L1 -2525 4039 1884 3717 206 83 145 chr9 29876776 29878251 -112393193 - L1MCb LINE L1 -4851 1194 3 299 322 23 0 chr9 29878328 29878415 -112393029 + MER91A DNA MER1_type 1 89 -107 401 288 142 52 chr9 29879970 29880182 -112391262 + L2 LINE L2 2674 2904 -410 600 169 181 12 chr9 29880458 29880618 -112390826 - MER5A DNA MER1_type 0 189 3 206 375 0 0 chr9 29880668 29880740 -112390704 + MIR SINE MIR 30 101 -107 474 269 192 16 chr9 29881280 29881473 -112389971 - MIR SINE MIR -26 236 10 530 292 72 15 chr9 29881680 29881875 -112389569 + MIR SINE MIR 57 262 0 817 184 80 2 chr9 29882659 29882925 -112388519 + MER2 DNA MER2_type 14 344 -1 378 284 124 12 chr9 29883305 29883474 -112387970 - MER5A DNA MER1_type 0 189 2 204 277 151 17 chr9 29883814 29883933 -112387511 + MIR SINE MIR 128 262 0 28 29 0 0 chr9 29885453 29885488 -112385956 + AT_rich Low_complexity Low_complexity 1 35 0 480 119 76 0 chr9 29885489 29885589 -112385855 - L1MA7 LINE L1 -11 6289 6166 487 257 88 29 chr9 29885592 29885763 -112385681 + MIR SINE MIR 20 200 -62 316 317 31 37 chr9 29886630 29886791 -112384653 - MIR SINE MIR -47 215 56 22 70 0 0 chr9 29888844 29888887 -112382557 + AT_rich Low_complexity Low_complexity 1 43 0 300 27 0 0 chr9 29889979 29890016 -112381428 + (CA)n Simple_repeat Simple_repeat 2 38 0 215 327 53 114 chr9 29891473 29891834 -112379610 + L2 LINE L2 2934 3272 0 639 246 67 42 chr9 29891926 29892166 -112379278 - MIR SINE MIR -10 252 7 2657 24 0 0 chr9 29892511 29892808 -112378636 + AluYa5 SINE Alu 1 297 -14 180 0 0 0 chr9 29894524 29894544 -112376900 + (T)n Simple_repeat Simple_repeat 1 20 0 396 254 156 15 chr9 29894740 29894945 -112376499 - MIR SINE MIR -17 245 12 195 336 98 49 chr9 29894967 29895089 -112376355 - L2 LINE L2 -19 3253 3126 581 227 45 61 chr9 29896035 29896233 -112375211 + MIR SINE MIR 26 220 -42 682 203 150 72 chr9 29897700 29898100 -112373344 - L1MC5 LINE L1 -48 7913 7483 204 266 114 0 chr9 29898265 29898344 -112373100 + MIR SINE MIR 86 173 -89 674 260 51 11 chr9 29900403 29900580 -112370864 - MER5A DNA MER1_type -1 188 5 469 329 60 16 chr9 29901598 29901847 -112369597 + MIR SINE MIR 3 262 0 429 274 181 18 chr9 29901992 29902273 -112369171 + L1ME4a LINE L1 4564 4890 -1256 366 311 112 25 chr9 29902773 29903014 -112368430 + L1ME4a LINE L1 5710 5971 -150 487 330 126 20 chr9 29903870 29904313 -112367131 - L2 LINE L2 -469 2845 2356 363 306 36 9 chr9 29904318 29904429 -112367015 - L2 LINE L2 -33 3280 3167 440 232 76 32 chr9 29904460 29904645 -112366799 + L1MC4a LINE L1 7383 7575 -233 185 206 111 48 chr9 29905622 29905685 -112365759 - L2 LINE L2 -58 3255 3189 182 370 37 0 chr9 29906808 29906889 -112364555 - MIR SINE MIR -81 127 44 556 345 57 59 chr9 29907030 29907488 -112363956 - L2 LINE L2 -8 3264 2808 427 281 14 58 chr9 29907720 29907859 -112363585 - MER5B DNA MER1_type -1 177 45 233 175 0 0 chr9 29909988 29910028 -112361416 - LTR3b LTR ERVK 0 500 461 3100 144 19 4 chr9 29910030 29910509 -112360935 - LTR3b LTR ERVK -14 486 1 497 245 27 34 chr9 29911348 29911495 -112359949 + MER103 DNA DNA 20 165 -1 229 289 0 0 chr9 29911610 29911700 -112359744 - L1MC4 LINE L1 -1339 6703 6614 210 143 0 0 chr9 29911704 29911739 -112359705 + (TA)n Simple_repeat Simple_repeat 2 36 0 276 396 97 21 chr9 29911902 29912190 -112359254 + L2 LINE L2 2950 3259 -13 280 286 73 38 chr9 29912584 29912871 -112358573 + Charlie7 DNA MER1_type 329 625 -1987 331 168 19 75 chr9 29913001 29913108 -112358336 + Charlie7 DNA MER1_type 2510 2610 -2 284 43 21 43 chr9 29913164 29913211 -112358233 + LTR14B LTR ERVK 1 46 -562 * 1901 100 121 48 chr9 29913199 29913570 -112357874 + LTR14B LTR ERVK 211 608 0 257 292 14 0 chr9 29914001 29914073 -112357371 + MIR SINE MIR 13 85 -177 646 266 116 13 chr9 29914474 29914707 -112356737 - MIR SINE MIR -2 260 4 253 291 186 42 chr9 29914952 29915313 -112356131 + L2 LINE L2 2882 3294 -19 553 191 0 0 chr9 29915383 29915477 -112355967 + L1PB4 LINE L1 6033 6126 -30 440 269 231 16 chr9 29915860 29916046 -112355398 + MIR SINE MIR 1 226 -36 314 202 107 12 chr9 29916517 29916601 -112354843 - L1MC4 LINE L1 -1339 6703 6612 346 184 30 18 chr9 29916601 29916769 -112354675 + (TA)n Simple_repeat Simple_repeat 1 170 0 22 56 0 0 chr9 29916776 29916812 -112354632 + AT_rich Low_complexity Low_complexity 1 36 0 861 186 93 44 chr9 29916822 29917070 -112354374 - L1MB7 LINE L1 0 6184 5925 182 254 0 18 chr9 29917431 29917486 -112353958 - L2 LINE L2 -2 3311 3258 * 188 170 0 113 chr9 29917485 29917538 -112353906 - MIR SINE MIR -75 187 141 620 196 0 0 chr9 29917538 29917640 -112353804 - FLAM_A SINE Alu -15 127 26 387 331 42 7 chr9 29917641 29917783 -112353661 - MIR SINE MIR -113 149 3 349 214 20 92 chr9 29919379 29919477 -112351967 + L2 LINE L2 3223 3313 0 23 33 0 0 chr9 29919655 29919685 -112351759 + AT_rich Low_complexity Low_complexity 1 30 0 203 147 0 0 chr9 29919826 29919860 -112351584 + MIR SINE MIR 118 151 -111 249 291 33 62 chr9 29921567 29921717 -112349727 + MIR SINE MIR 12 159 -49 348 269 15 33 chr9 29921900 29922030 -112349414 - MIR SINE MIR -61 201 78 1345 176 68 84 chr9 29922270 29922650 -112348794 - MLT1A2 LTR MaLR 0 374 1 286 271 0 68 chr9 29922742 29922860 -112348584 - MIR SINE MIR -56 206 97 458 214 68 17 chr9 29922956 29923073 -112348371 - L2 LINE L2 0 3313 3191 266 271 75 9 chr9 29923330 29923437 -112348007 + L2 LINE L2 3192 3305 -8 1576 187 16 26 chr9 29924807 29925117 -112346327 - AluJo SINE Alu -5 307 1 193 348 22 87 chr9 29925745 29925883 -112345561 - MIR3 SINE MIR -74 134 6 26 64 0 0 chr9 29925912 29925959 -112345485 + AT_rich Low_complexity Low_complexity 1 47 0 279 228 94 76 chr9 29927339 29927510 -112343934 + MIR SINE MIR 63 236 -26 528 287 28 6 chr9 29927660 29927841 -112343603 - HsTC2a DNA Tc2 -172 570 386 615 205 0 8 chr9 29927848 29927970 -112343474 + FLAM_C SINE Alu 1 121 -22 1118 261 39 36 chr9 29927983 29928373 -112343071 - HsTC2a DNA Tc2 -347 397 7 263 321 64 28 chr9 29928513 29928622 -112342822 - L2 LINE L2 -5 3267 3155 187 320 10 68 chr9 29928710 29928813 -112342631 - MIR3 SINE MIR -40 168 72 45 62 0 0 chr9 29929020 29929100 -112342344 + AT_rich Low_complexity Low_complexity 1 80 0 516 240 140 43 chr9 29929277 29929577 -112341867 - L1ME3 LINE L1 -211 5951 5623 433 286 68 39 chr9 29929583 29930046 -112341398 - L1M1 LINE L1 -621 5543 5102 342 286 40 29 chr9 29930791 29930985 -112340459 - L1MEc LINE L1 -900 1676 1452 187 85 34 51 chr9 29931883 29931942 -112339502 + GA-rich Low_complexity Low_complexity 2 59 0 575 310 214 36 chr9 29932375 29932673 -112338771 + L3 LINE CR1 62 306 -1271 2151 89 24 7 chr9 29932673 29932964 -112338480 + AluSp SINE Alu 2 297 -16 575 310 214 36 chr9 29932964 29933414 -112338030 + L3 LINE CR1 306 943 -634 1408 349 82 14 chr9 29933813 29934862 -112336582 + L2 LINE L2 2183 3313 0 1161 146 33 38 chr9 29935171 29935384 -112336060 - MER20 DNA MER1_type 0 219 8 544 297 47 18 chr9 29935689 29935935 -112335509 + MIR SINE MIR 13 262 0 180 0 0 0 chr9 29936279 29936299 -112335145 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 222 213 0 0 chr9 29936831 29936878 -112334566 + CT-rich Low_complexity Low_complexity 2 48 0 387 177 0 0 chr9 29937641 29937703 -112333741 + MLT2E LTR ERVL 32 93 -535 221 342 13 0 chr9 29937705 29937781 -112333663 + MIR SINE MIR 178 254 -8 22 35 0 0 chr9 29938157 29938186 -112333258 + AT_rich Low_complexity Low_complexity 1 29 0 318 259 189 14 chr9 29938660 29938803 -112332641 - MIR SINE MIR -89 173 6 417 314 26 7 chr9 29939073 29939226 -112332218 - MIR SINE MIR -26 236 81 334 192 51 0 chr9 29939983 29940061 -112331383 + L1MC4a LINE L1 5808 5889 -1919 1184 264 198 35 chr9 29940969 29941423 -112330021 + MLT1H LTR MaLR 6 533 -16 399 273 97 26 chr9 29942146 29942300 -112329144 + MIR SINE MIR 40 204 -58 315 0 0 0 chr9 29942307 29942342 -112329102 + (CA)n Simple_repeat Simple_repeat 2 36 0 26105 46 8 1 chr9 29942730 29946813 -112324631 + L1PA5 LINE L1 2046 6154 0 819 315 28 8 chr9 29946962 29947213 -112324231 - MIR SINE MIR 0 262 7 230 396 0 0 chr9 29947545 29947641 -112323803 + MIR SINE MIR 167 262 0 22 35 0 0 chr9 29947664 29947693 -112323751 + AT_rich Low_complexity Low_complexity 1 29 0 204 292 0 0 chr9 29948102 29948150 -112323294 + L2 LINE L2 3208 3255 -17 189 0 0 0 chr9 29948632 29948653 -112322791 + (GA)n Simple_repeat Simple_repeat 1 21 0 23 0 0 0 chr9 29949096 29949119 -112322325 + AT_rich Low_complexity Low_complexity 1 23 0 4491 45 9 0 chr9 29949459 29950038 -112321406 + L1P LINE L1 4783 5366 -780 1281 192 0 5 chr9 29950038 29950262 -112321182 + AluJo SINE Alu 78 300 -12 377 323 46 15 chr9 29950266 29950396 -112321048 + MIR SINE MIR 122 255 -7 346 299 160 27 chr9 29950518 29950705 -112320739 - MLT1I LTR MaLR -197 212 1 6854 20 0 0 chr9 29951148 29951936 -112319508 + L1HS LINE L1 5352 6139 -16 221 0 35 0 chr9 29951936 29951965 -112319479 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 10953 108 9 2 chr9 29952442 29954895 -112316549 - L1PA8 LINE L1 0 6172 3710 469 296 66 15 chr9 29954964 29955149 -112316295 + MIR SINE MIR 65 256 -6 303 254 44 35 chr9 29956343 29956457 -112314987 - MIR3 SINE MIR -7 201 87 294 298 105 84 chr9 29956534 29956973 -112314471 - L2 LINE L2 -16 3297 2850 352 324 147 0 chr9 29956982 29957152 -112314292 - MIR SINE MIR -6 256 62 1406 189 36 102 chr9 29957574 29957626 -112313818 - MLT1B LTR MaLR -4 386 332 1880 157 49 12 chr9 29957626 29957951 -112313493 - MER1B DNA MER1_type 0 337 1 1406 189 36 102 chr9 29957951 29958311 -112313133 - MLT1B LTR MaLR -58 332 1 414 249 50 99 chr9 29958352 29958553 -112312891 + L2 LINE L2 3118 3308 -5 249 98 0 0 chr9 29959564 29959605 -112311839 + (A)n Simple_repeat Simple_repeat 1 41 0 1319 265 114 28 chr9 29960102 29960584 -112310860 - MLT1H LTR MaLR 0 542 1 218 264 160 90 chr9 29963439 29963583 -112307861 + L2 LINE L2 3108 3261 -11 393 328 191 33 chr9 29963667 29964398 -112307046 - L2 LINE L2 -14 3299 2468 434 105 13 0 chr9 29965443 29965519 -112305925 - L1MB8 LINE L1 -7 6171 6095 1897 156 6 19 chr9 29965522 29965836 -112305608 - AluSx SINE Alu 0 312 3 6580 26 0 0 chr9 29966015 29966816 -112304628 - L1PA3 LINE L1 -3 6152 5352 288 300 161 28 chr9 29967259 29967439 -112304005 + MLT1I LTR MaLR 1 204 -205 370 323 46 15 chr9 29967568 29967698 -112303746 - MIR SINE MIR -7 255 122 1312 192 0 5 chr9 29967702 29967926 -112303518 - AluJo SINE Alu -12 300 78 3127 30 2 0 chr9 29967926 29968333 -112303111 - L1P LINE L1 -780 5366 4959 5831 100 8 6 chr9 29968438 29969301 -112302143 + L1PA8 LINE L1 5308 6172 0 221 0 35 0 chr9 29969778 29969807 -112301637 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 40342 31 22 1 chr9 29969807 29975748 -112295696 - L1HS LINE L1 -16 6139 73 299 95 0 0 chr9 29975839 29975881 -112295563 + L1PA10 LINE L1 5540 5581 -587 1752 116 8 4 chr9 29975881 29976131 -112295313 + L1PA10 LINE L1 5902 6161 -7 598 99 77 0 chr9 29977129 29977220 -112294224 - AluSg/x SINE Alu -125 187 90 557 315 71 21 chr9 29977246 29977484 -112293960 + MIR SINE MIR 13 262 0 21 0 0 0 chr9 29980174 29980195 -112291249 + AT_rich Low_complexity Low_complexity 1 21 0 231 361 118 6 chr9 29980303 29980472 -112290972 - MIR SINE MIR -70 192 5 2327 81 7 10 chr9 29981553 29981848 -112289596 - AluY SINE Alu -17 294 1 431 218 61 87 chr9 29985032 29985261 -112286183 + MLT1H LTR MaLR 74 296 -253 301 296 72 8 chr9 29985696 29985821 -112285623 + MIR SINE MIR 15 147 -115 509 286 32 38 chr9 29985984 29986169 -112285275 - MIR3 SINE MIR -5 203 20 1790 232 50 56 chr9 29986654 29987211 -112284233 + MLT2B3 LTR ERVL 1 554 0 309 332 30 62 chr9 29989814 29989958 -112281486 + MIR SINE MIR 17 154 -67 469 232 87 7 chr9 29991255 29991393 -112280051 - L2 LINE L2 -960 2354 2206 666 312 194 13 chr9 29991588 29992145 -112279299 + L2 LINE L2 2052 2709 -605 249 196 139 76 chr9 29993714 29993872 -112277572 + L2 LINE L2 3098 3265 -48 333 282 12 12 chr9 29994135 29994220 -112277224 - MER91A DNA MER1_type 0 196 112 1957 186 60 55 chr9 29994604 29995081 -112276363 + MLT2B1 LTR ERVL 6 488 -32 261 0 0 0 chr9 29995081 29995110 -112276334 + (CA)n Simple_repeat Simple_repeat 2 30 0 1957 186 60 55 chr9 29995110 29995144 -112276300 + MLT2B1 LTR ERVL 488 520 0 23 0 0 0 chr9 29995200 29995223 -112276221 + AT_rich Low_complexity Low_complexity 1 23 0 27 0 0 0 chr9 29995460 29995487 -112275957 + AT_rich Low_complexity Low_complexity 1 27 0 440 298 44 63 chr9 29995854 29996059 -112275385 - MIR SINE MIR -28 234 34 312 351 155 65 chr9 29998365 29998732 -112272712 + L2 LINE L2 2835 3234 -38 31 68 0 0 chr9 29998793 29998852 -112272592 + AT_rich Low_complexity Low_complexity 1 59 0 366 263 28 50 chr9 29999176 29999361 -112272083 + MER20B DNA MER1_type 17 202 -17 2039 110 14 3 chr9 29999517 29999807 -112271637 + AluSg SINE Alu 1 293 -17 21 0 0 0 chr9 30001784 30001805 -112269639 + AT_rich Low_complexity Low_complexity 1 21 0 286 293 0 20 chr9 30001903 30002002 -112269442 + (TAGA)n Simple_repeat Simple_repeat 4 100 0 225 346 9 20 chr9 30002187 30002339 -112269105 + MER5B DNA MER1_type 1 159 -30 266 180 16 0 chr9 30003513 30003574 -112267870 + CT-rich Low_complexity Low_complexity 1 62 0 288 263 0 0 chr9 30004456 30004536 -112266908 + L1M1 LINE L1 3539 3618 -3947 210 297 14 0 chr9 30005133 30005207 -112266237 + MIR SINE MIR 21 95 -167 545 88 12 0 chr9 30007095 30007175 -112264269 + AluSc SINE Alu 4 84 -225 1553 141 61 64 chr9 30007185 30008155 -112263289 + SVA Other Other 434 868 -783 1584 114 0 0 chr9 30008259 30008470 -112262974 + AluSc SINE Alu 73 283 -26 353 338 5 5 chr9 30009034 30009238 -112262206 + L1ME LINE L1 3762 3965 -2181 205 204 23 0 chr9 30009277 30009321 -112262123 + (CATATA)n Simple_repeat Simple_repeat 3 47 0 647 298 101 62 chr9 30009567 30009972 -112261472 + L1ME LINE L1 4298 4686 -1460 2235 140 23 52 chr9 30009972 30010414 -112261030 + MSTB1 LTR MaLR 1 429 -3 647 298 101 62 chr9 30010414 30010908 -112260536 + L1ME LINE L1 4686 5312 -834 235 200 36 0 chr9 30011015 30011070 -112260374 + L1ME LINE L1 5539 5595 -526 236 261 72 0 chr9 30011294 30011363 -112260081 + L2 LINE L2 3218 3291 -22 375 308 39 0 chr9 30013296 30013400 -112258044 + L2 LINE L2 2636 2743 -571 1743 217 19 3 chr9 30013558 30013917 -112257527 + MLT1A1 LTR MaLR 1 365 0 311 237 89 82 chr9 30014257 30014392 -112257052 - MIR SINE MIR -21 241 106 10858 102 15 3 chr9 30014468 30015964 -112255480 - THE1B-int LTR MaLR -66 1514 1 1666 119 218 16 chr9 30015964 30016267 -112255177 - THE1B LTR MaLR 0 364 1 649 143 0 0 chr9 30017333 30017445 -112253999 - L1MA7 LINE L1 0 6291 6180 319 343 46 0 chr9 30018559 30018667 -112252777 + L2 LINE L2 3201 3313 0 23 33 0 0 chr9 30019822 30019852 -112251592 + AT_rich Low_complexity Low_complexity 1 30 0 543 304 103 5 chr9 30022229 30022433 -112249011 - MIR SINE MIR -13 249 26 210 335 106 59 chr9 30023971 30024055 -112247389 - L2 LINE L2 0 3272 3193 216 86 0 0 chr9 30024055 30024090 -112247354 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 210 335 106 59 chr9 30024090 30024175 -112247269 - L2 LINE L2 -79 3193 3095 * 250 192 291 46 chr9 30024155 30024306 -112247138 + MIR SINE MIR 10 197 -65 546 287 35 59 chr9 30025038 30025263 -112246181 - L1MEc LINE L1 -6027 369 153 1739 172 0 20 chr9 30025263 30025566 -112245878 - AluSx SINE Alu -11 301 5 546 287 35 59 chr9 30025566 30025681 -112245763 - L1MEc LINE L1 -6243 153 37 338 232 61 20 chr9 30026043 30026142 -112245302 + MLT1K LTR MaLR 435 537 -51 270 311 8 0 chr9 30026823 30026919 -112244525 - L2 LINE L2 -12 3260 3203 24 0 0 0 chr9 30027032 30027056 -112244388 + AT_rich Low_complexity Low_complexity 1 24 0 673 209 32 19 chr9 30027412 30027570 -112243874 - L2 LINE L2 -4 3309 3150 234 217 12 60 chr9 30027615 30027698 -112243746 - L2 LINE L2 -1559 1755 1677 663 302 142 30 chr9 30027703 30028041 -112243403 + L2 LINE L2 2935 3310 -3 181 244 90 64 chr9 30028138 30028216 -112243228 - MIR SINE MIR -39 223 144 2092 171 146 9 chr9 30028432 30028876 -112242568 - MLT1D LTR MaLR 0 505 1 2282 60 16 44 chr9 30029611 30029929 -112241515 + AluY SINE Alu 2 310 -1 2745 7 0 0 chr9 30029993 30030291 -112241153 + AluYa5 SINE Alu 1 298 -13 287 321 0 9 chr9 30030295 30030407 -112241037 - MIR SINE MIR -36 226 116 201 159 0 0 chr9 30032359 30032403 -112239041 + (CA)n Simple_repeat Simple_repeat 1 44 0 247 336 187 0 chr9 30032598 30032705 -112238739 + L2 LINE L2 3137 3263 -9 380 84 0 42 chr9 30032755 30032774 -112238670 + (GA)n Simple_repeat Simple_repeat 1 19 -49 222 62 0 0 chr9 30032774 30032806 -112238638 + (TG)n Simple_repeat Simple_repeat 1 32 0 380 84 0 42 chr9 30032806 30032857 -112238587 + (GA)n Simple_repeat Simple_repeat 19 68 0 341 331 14 14 chr9 30033215 30033354 -112238090 - MLT2E LTR ERVL -450 178 40 185 338 14 27 chr9 30033906 30033980 -112237464 + L2 LINE L2 2710 2782 -532 394 315 31 8 chr9 30034483 30034610 -112236834 - MIR SINE MIR -50 212 83 488 261 33 7 chr9 30035376 30035529 -112235915 + MIR SINE MIR 106 262 0 296 207 96 0 chr9 30035642 30035737 -112235707 - MIR SINE MIR -62 146 88 282 115 39 39 chr9 30037131 30037209 -112234235 + (CTATA)n Simple_repeat Simple_repeat 3 80 0 483 60 5 101 chr9 30037211 30037410 -112234034 + (TA)n Simple_repeat Simple_repeat 1 180 0 323 126 45 18 chr9 30037469 30037580 -112233864 + (CTATA)n Simple_repeat Simple_repeat 2 115 0 180 77 0 0 chr9 30038704 30038730 -112232714 + (CA)n Simple_repeat Simple_repeat 1 26 0 893 230 11 0 chr9 30039289 30039476 -112231968 + MER5A DNA MER1_type 1 189 0 489 103 13 0 chr9 30039648 30039726 -112231718 - L1PA8A LINE L1 -1634 4512 4434 * 6384 89 14 1 chr9 30039718 30041304 -112230140 + L1PA8A LINE L1 4514 6111 -20 718 255 25 6 chr9 30041338 30041499 -112229945 + MER58A DNA MER1_type 1 164 0 420 264 54 36 chr9 30041784 30041951 -112229493 - MER117 DNA MER1_type -23 174 5 188 254 26 9 chr9 30042407 30042521 -112228923 + GA-rich Low_complexity Low_complexity 1 116 0 240 59 0 0 chr9 30042821 30042855 -112228589 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1924 282 44 42 chr9 30044259 30045091 -112226353 - L2 LINE L2 -6 3307 2471 2062 134 3 0 chr9 30045091 30045390 -112226054 + AluSx SINE Alu 1 300 -12 1924 282 44 42 chr9 30045390 30045541 -112225903 - L2 LINE L2 -842 2471 2322 1347 75 0 0 chr9 30047096 30047349 -112224095 + (GGAA)n Simple_repeat Simple_repeat 1 253 0 2095 176 0 11 chr9 30047997 30048356 -112223088 + MLT1A1 LTR MaLR 1 355 -10 204 245 19 0 chr9 30049170 30049223 -112222221 + CT-rich Low_complexity Low_complexity 4 57 0 180 314 129 14 chr9 30049224 30049294 -112222150 - L2 LINE L2 -9 3304 3227 1049 299 128 8 chr9 30049296 30049811 -112221633 + L2 LINE L2 1886 2462 -852 187 133 44 0 chr9 30049867 30049912 -112221532 + (TA)n Simple_repeat Simple_repeat 2 48 0 27 0 0 0 chr9 30049985 30050012 -112221432 + AT_rich Low_complexity Low_complexity 1 27 0 33 25 0 0 chr9 30050994 30051034 -112220410 + AT_rich Low_complexity Low_complexity 1 40 0 1243 269 73 21 chr9 30051261 30051822 -112219622 - MLT1G1 LTR MaLR 0 567 1 697 266 94 5 chr9 30051934 30052137 -112219307 - MIR SINE MIR -29 233 13 388 315 50 57 chr9 30052204 30052642 -112218802 + L1MC/D LINE L1 2154 2588 -3558 312 321 32 43 chr9 30053129 30053316 -112218128 + L1MC/D LINE L1 3288 3472 -2674 284 274 47 58 chr9 30053474 30053748 -112217696 + L1MC/D LINE L1 3692 3962 -2184 728 326 87 72 chr9 30053836 30054385 -112217059 + L1MC/D LINE L1 4080 4619 -1527 2171 170 18 18 chr9 30054385 30054820 -112216624 + L1MA4 LINE L1 5852 6286 -14 728 326 87 72 chr9 30054820 30055495 -112215949 + L1MC/D LINE L1 4619 5322 -824 388 306 89 12 chr9 30055507 30055755 -112215689 + L1MC/D LINE L1 5392 5658 -2150 191 267 253 0 chr9 30056465 30056540 -112214904 - L3 LINE CR1 -11 1566 1473 282 240 0 80 chr9 30056785 30056885 -112214559 + L2 LINE L2 3181 3272 0 2542 55 3 0 chr9 30056956 30057264 -112214180 - AluY SINE Alu -2 309 1 5562 11 0 2 chr9 30058705 30059337 -112212107 - L1PA2 LINE L1 -2 6153 5523 222 150 0 0 chr9 30059413 30059453 -112211991 + (TCC)n Simple_repeat Simple_repeat 3 42 0 1684 181 66 36 chr9 30059554 30059918 -112211526 - MLT1C LTR MaLR -91 376 2 223 333 16 32 chr9 30059918 30060041 -112211403 - MER5A DNA MER1_type -68 121 1 221 244 105 47 chr9 30060298 30060384 -112211060 + MIR SINE MIR 84 174 -88 318 303 71 0 chr9 30060565 30060664 -112210780 + L2 LINE L2 3192 3297 -16 344 284 26 26 chr9 30061502 30061657 -112209787 + MER103 DNA DNA 3 157 -9 195 204 0 0 chr9 30061850 30061894 -112209550 + (CA)n Simple_repeat Simple_repeat 2 45 0 605 289 93 21 chr9 30062918 30063198 -112208246 + L2 LINE L2 2934 3233 -80 2028 131 55 0 chr9 30063527 30063817 -112207627 + AluSg SINE Alu 1 306 -4 724 295 117 38 chr9 30066167 30066670 -112204774 - HAL1 LINE L1 -1948 559 12 23 0 0 0 chr9 30068415 30068438 -112203006 + AT_rich Low_complexity Low_complexity 1 23 0 260 297 0 0 chr9 30069432 30069506 -112201938 + CT-rich Low_complexity Low_complexity 4 77 0 364 91 0 18 chr9 30069561 30069616 -112201828 + MADE1 DNA Mariner 27 80 0 391 308 45 45 chr9 30069901 30070057 -112201387 - MIR SINE MIR -101 161 6 1090 197 5 0 chr9 30070268 30070476 -112200968 - MER3 DNA MER1_type 0 209 1 491 307 104 10 chr9 30172776 30172968 -112098476 - MIR SINE MIR -12 250 41 25 0 0 0 chr9 30173553 30173578 -112097866 + AT_rich Low_complexity Low_complexity 1 25 0 23821 77 2 0 chr9 30173692 30176852 -112094592 + L1PA5 LINE L1 1 3164 -2982 7110 53 1 2 chr9 30176852 30178278 -112093166 + L1PA5 LINE L1 4725 6150 -4 419 120 13 13 chr9 30178290 30178365 -112093079 - MADE1 DNA Mariner 0 80 6 3169 106 4 4 chr9 30178423 30178876 -112092568 - MLT2A2 LTR ERVL 0 453 1 229 280 0 27 chr9 30179067 30179142 -112092302 + MLT1L LTR MaLR 1 73 -542 180 0 0 0 chr9 30179645 30179665 -112091779 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1189 223 66 39 chr9 30180970 30181418 -112090026 + MLT1D LTR MaLR 1 505 0 456 344 20 29 chr9 30181544 30181788 -112089656 - L1MC/D LINE L1 -2071 5737 5496 237 286 78 13 chr9 30181934 30182011 -112089433 + MIR SINE MIR 28 109 -153 283 292 46 82 chr9 30182011 30182206 -112089238 - MER5A DNA MER1_type 0 189 2 2125 109 7 7 chr9 30182577 30182880 -112088564 - AluSc SINE Alu -6 303 1 1507 145 4 4 chr9 30183028 30183256 -112088188 + AluSx SINE Alu 1 228 -84 516 321 65 11 chr9 30183850 30184034 -112087410 - MIR SINE MIR -68 194 1 28 48 0 0 chr9 30184092 30184134 -112087310 + AT_rich Low_complexity Low_complexity 1 42 0 24 0 0 0 chr9 30185687 30185711 -112085733 + AT_rich Low_complexity Low_complexity 1 24 0 258 333 0 0 chr9 30185909 30185981 -112085463 + (CATA)n Simple_repeat Simple_repeat 2 73 0 205 368 38 38 chr9 30187096 30187229 -112084215 + L2 LINE L2 3132 3264 -8 374 308 82 14 chr9 30187418 30187564 -112083880 - MIR3 SINE MIR -33 175 20 856 263 42 70 chr9 30187871 30188183 -112083261 + L3 LINE CR1 1096 1398 -179 190 318 63 0 chr9 30188257 30188320 -112083124 + L3 LINE CR1 1506 1572 -5 2050 36 0 0 chr9 30189560 30189807 -112081637 - L1PA3 LINE L1 -1063 5083 4837 7641 24 0 0 chr9 30189807 30190895 -112080549 + L1PA3 LINE L1 5088 6175 0 224 363 41 47 chr9 30191102 30191273 -112080171 + MIR SINE MIR 26 195 -67 468 139 0 0 chr9 30192535 30192614 -112078830 + (TA)n Simple_repeat Simple_repeat 2 80 0 342 0 0 0 chr9 30192614 30192652 -112078792 + (CA)n Simple_repeat Simple_repeat 1 38 0 251 219 122 12 chr9 30193337 30193419 -112078025 + MIR SINE MIR 172 262 0 378 307 117 6 chr9 30193976 30194139 -112077305 + MER5A DNA MER1_type 9 189 0 239 297 14 14 chr9 30194421 30194495 -112076949 - L2 LINE L2 -251 3062 2989 548 326 179 18 chr9 30194576 30195033 -112076411 - L2 LINE L2 -454 2860 2330 688 289 72 20 chr9 30195037 30195286 -112076158 + MIR SINE MIR 1 262 0 186 365 0 0 chr9 30195283 30195346 -112076098 - L2 LINE L2 -990 2324 2262 * 2420 28 0 0 chr9 30195923 30196227 -112075217 + AluY SINE Alu 1 304 0 276 331 62 19 chr9 30196762 30196922 -112074522 + MIR SINE MIR 78 244 -18 243 319 80 9 chr9 30196970 30197083 -112074361 - MIR SINE MIR -48 214 94 602 254 133 21 chr9 30197431 30197710 -112073734 - MER5C DNA MER1_type 0 324 15 22 0 0 0 chr9 30198429 30198451 -112072993 + AT_rich Low_complexity Low_complexity 1 22 0 273 57 0 0 chr9 30199051 30199086 -112072358 + (TG)n Simple_repeat Simple_repeat 1 35 0 929 240 65 25 chr9 30200295 30200620 -112070824 - L1ME3A LINE L1 -23 6147 5810 586 244 118 33 chr9 30200649 30200919 -112070525 - L1ME3A LINE L1 -464 5698 5406 1168 209 105 51 chr9 30200926 30201356 -112070088 + MSTB2 LTR MaLR 5 457 0 350 183 63 7 chr9 30201506 30201648 -112069796 + (TA)n Simple_repeat Simple_repeat 1 150 0 603 194 15 0 chr9 30202221 30202355 -112069089 - L1MB3 LINE L1 0 6183 6048 339 222 30 20 chr9 30202356 30202455 -112068989 - L1M4c LINE L1 -4249 2920 2821 4219 231 19 28 chr9 30202500 30203734 -112067710 - L1M4c LINE L1 -4480 2689 1562 252 264 14 14 chr9 30203843 30203915 -112067529 - L1M4c LINE L1 -7094 74 3 36 23 0 0 chr9 30204817 30204860 -112066584 + AT_rich Low_complexity Low_complexity 1 43 0 2200 78 0 7 chr9 30205171 30205454 -112065990 + AluY SINE Alu 1 281 -30 6325 131 27 9 chr9 30205747 30206882 -112064562 - L1MA3 LINE L1 0 6305 5148 1993 217 150 43 chr9 30206882 30207628 -112063816 + LTR1B LTR ERV1 1 826 0 6325 131 27 9 chr9 30207628 30207710 -112063734 - L1MA3 LINE L1 -1157 5148 5069 317 301 9 18 chr9 30209348 30209461 -112061983 + MER94 DNA DNA 8 119 -15 254 333 15 59 chr9 30209683 30209818 -112061626 + MIR3 SINE MIR 69 197 -11 216 0 0 0 chr9 30210059 30210083 -112061361 + (T)n Simple_repeat Simple_repeat 1 24 0 453 284 39 44 chr9 30210436 30210640 -112060804 + MIR SINE MIR 6 208 -54 207 357 47 62 chr9 30212769 30212898 -112058546 - L2 LINE L2 0 3272 3146 181 152 121 0 chr9 30212996 30213029 -112058415 + L2 LINE L2 3227 3263 -9 185 245 0 20 chr9 30213159 30213208 -112058236 + MIR SINE MIR 156 203 -59 1313 165 34 88 chr9 30214773 30215070 -112056374 + AluJo SINE Alu 7 287 -25 391 307 167 5 chr9 30216210 30216402 -112055042 + MIR SINE MIR 27 249 -13 197 408 11 45 chr9 30216568 30216835 -112054609 - L2 LINE L2 -343 2971 2714 205 146 42 0 chr9 30217883 30217931 -112053513 + (TA)n Simple_repeat Simple_repeat 2 51 0 321 253 0 13 chr9 30218702 30218781 -112052663 + MARNA DNA Mariner 386 463 -123 184 400 11 0 chr9 30218798 30218893 -112052551 + L2 LINE L2 2662 2757 -557 393 299 109 0 chr9 30219214 30219361 -112052083 + L2 LINE L2 3150 3312 -1 193 324 101 73 chr9 30219594 30219813 -112051631 + L2 LINE L2 2830 3054 -218 373 272 19 19 chr9 30219953 30220115 -112051329 + MER103 DNA DNA 3 164 -2 295 360 70 17 chr9 30222157 30222329 -112049115 - MER5A DNA MER1_type -8 181 1 378 0 0 0 chr9 30223423 30223465 -112047979 + (CA)n Simple_repeat Simple_repeat 2 43 0 350 324 227 45 chr9 30224227 30224690 -112046754 - L3 LINE CR1 -667 910 364 324 180 0 0 chr9 30224876 30224926 -112046518 - FLAM SINE Alu -9 124 75 1809 202 34 8 chr9 30224951 30225307 -112046137 - MLT1A1 LTR MaLR 0 365 1 620 317 77 84 chr9 30225369 30225991 -112045453 - L2 LINE L2 -199 3073 2462 227 227 182 45 chr9 30226016 30226104 -112045340 - MIR SINE MIR -155 107 8 318 222 173 0 chr9 30227374 30227455 -112043989 + MIR SINE MIR 13 107 -155 4829 203 103 91 chr9 30227480 30229213 -112042231 - MER52A LTR ERV1 0 1755 3 455 148 0 11 chr9 30230019 30230107 -112041337 - L1MA7 LINE L1 -2 6289 6203 240 206 20 59 chr9 30230159 30230261 -112041183 + L1ME4a LINE L1 5977 6074 -47 232 315 228 20 chr9 30230893 30231042 -112040402 + MER5A DNA MER1_type 7 186 -3 342 0 0 0 chr9 30231208 30231246 -112040198 + (A)n Simple_repeat Simple_repeat 1 38 0 704 210 90 23 chr9 30231294 30231563 -112039881 - MSTD LTR MaLR -62 303 1 23 0 0 0 chr9 30232324 30232347 -112039097 + AT_rich Low_complexity Low_complexity 1 23 0 751 269 152 25 chr9 30232431 30232695 -112038749 - MLT1I LTR MaLR 0 409 85 1763 167 162 8 chr9 30232695 30233066 -112038378 - MSTA LTR MaLR 0 428 1 751 269 152 25 chr9 30233066 30233162 -112038282 - MLT1I LTR MaLR -324 85 3 229 215 0 97 chr9 30233167 30233260 -112038184 - L1MC4 LINE L1 -1300 6742 6659 235 242 48 18 chr9 30233269 30233434 -112038010 + (TTATA)n Simple_repeat Simple_repeat 5 174 0 * 342 174 59 14 chr9 30233319 30233611 -112037833 + (TA)n Simple_repeat Simple_repeat 1 305 0 228 134 0 90 chr9 30233626 30233693 -112037751 + LTR66 LTR ERVL 398 458 -152 2535 206 47 4 chr9 30233825 30234319 -112037125 - MLT2B2 LTR ERVL 0 515 1 2480 206 27 24 chr9 30234853 30234888 -112036556 - MLT2B3 LTR ERVL -3 551 518 525 115 0 0 chr9 30234888 30234975 -112036469 + (TG)n Simple_repeat Simple_repeat 2 88 0 2480 206 27 24 chr9 30234975 30235488 -112035956 - MLT2B3 LTR ERVL -36 518 1 485 279 86 41 chr9 30235532 30235741 -112035703 + LTR33 LTR ERVL 234 460 -61 2377 50 0 0 chr9 30235741 30236076 -112035368 + AluY SINE Alu 1 335 0 485 279 86 41 chr9 30236076 30236134 -112035310 + LTR33 LTR ERVL 460 514 -7 22 0 0 0 chr9 30236256 30236278 -112035166 + AT_rich Low_complexity Low_complexity 1 22 0 818 198 6 73 chr9 30237965 30238142 -112033302 - LTR69 LTR ERVL -102 486 322 4097 93 44 58 chr9 30238163 30238547 -112032897 - L1PB2 LINE L1 0 6151 5780 303 28 0 0 chr9 30238547 30238583 -112032861 + (GA)n Simple_repeat Simple_repeat 2 37 0 4097 93 44 58 chr9 30238583 30238927 -112032517 - L1PB2 LINE L1 -371 5780 5433 34 65 0 0 chr9 30240063 30240125 -112031319 + AT_rich Low_complexity Low_complexity 1 62 0 1445 264 55 66 chr9 30241231 30241426 -112030018 + MLT1F1 LTR MaLR 1 197 -370 378 0 0 0 chr9 30241426 30241468 -112029976 + (TC)n Simple_repeat Simple_repeat 1 42 0 1445 264 55 66 chr9 30241468 30241818 -112029626 + MLT1F1 LTR MaLR 197 565 -2 189 0 0 0 chr9 30242367 30242388 -112029056 + (CA)n Simple_repeat Simple_repeat 1 21 0 339 318 58 40 chr9 30243613 30243786 -112027658 - MIR SINE MIR -72 190 15 486 314 126 18 chr9 30244866 30245089 -112026355 + MIR SINE MIR 3 249 -13 207 278 21 93 chr9 30245282 30245379 -112026065 + L2 LINE L2 3177 3266 -6 437 273 148 0 chr9 30246961 30247137 -112024307 + MIR SINE MIR 2 203 -59 438 164 39 8 chr9 30247138 30247266 -112024178 + (TA)n Simple_repeat Simple_repeat 1 132 0 463 349 68 5 chr9 30247480 30247672 -112023772 - MIR SINE MIR -57 205 2 1069 294 58 27 chr9 30247867 30248350 -112023094 - MLT1H LTR MaLR -2 547 7 4589 199 37 25 chr9 30249291 30250730 -112020714 - L1MB3 LINE L1 -7 6176 4699 887 276 44 0 chr9 30250730 30250955 -112020489 - MER8 DNA MER2_type -1 238 4 4589 199 37 25 chr9 30250955 30251386 -112020058 - L1MB3 LINE L1 -1484 4699 4275 26 30 0 0 chr9 30252648 30252681 -112018763 + AT_rich Low_complexity Low_complexity 1 33 0 240 287 128 49 chr9 30252971 30253135 -112018309 + MIR SINE MIR 15 191 -71 360 222 113 113 chr9 30253777 30253923 -112017521 - MIR SINE MIR -12 250 102 2125 117 0 0 chr9 30253923 30254222 -112017222 + AluSg SINE Alu 3 301 -9 360 222 113 113 chr9 30254222 30254269 -112017175 - MIR SINE MIR -159 103 57 278 370 90 32 chr9 30254583 30254861 -112016583 - L2 LINE L2 0 3313 3020 197 208 104 0 chr9 30256636 30256684 -112014760 - L2 LINE L2 0 3313 3261 393 337 69 29 chr9 30256961 30257207 -112014237 - L2 LINE L2 -438 2876 2621 311 318 53 25 chr9 30257430 30257675 -112013769 - L1ME4a LINE L1 -227 5894 5643 22 35 0 0 chr9 30258115 30258144 -112013300 + AT_rich Low_complexity Low_complexity 1 29 0 36 40 0 0 chr9 30258531 30258581 -112012863 + AT_rich Low_complexity Low_complexity 1 50 0 277 340 11 0 chr9 30258912 30259006 -112012438 - MIR3 SINE MIR -54 154 60 2407 151 7 20 chr9 30259235 30259690 -112011754 - Tigger2 DNA MER2_type 0 2718 1 1040 208 15 30 chr9 30259836 30260100 -112011344 - L1 LINE L1 -1764 4382 4123 * 2044 211 48 80 chr9 30260098 30260308 -112011136 + L1MB5 LINE L1 5300 5515 -668 1568 109 4 21 chr9 30260308 30260546 -112010898 + L1PB3 LINE L1 5914 6147 -7 2044 211 48 80 chr9 30260546 30261166 -112010278 + L1MB5 LINE L1 5515 6183 0 185 0 0 39 chr9 30262298 30262324 -112009120 + (TTTCC)n Simple_repeat Simple_repeat 5 29 0 414 228 14 17 chr9 30262329 30262622 -112008822 + CT-rich Low_complexity Low_complexity 1 292 0 346 235 61 0 chr9 30262641 30262739 -112008705 + MIR3 SINE MIR 105 208 0 297 0 0 0 chr9 30262844 30262877 -112008567 + (CA)n Simple_repeat Simple_repeat 1 33 0 2464 42 3 0 chr9 30263715 30264025 -112007419 - L1PA4 LINE L1 0 6155 5845 253 307 79 79 chr9 30264147 30264375 -112007069 - MIR SINE MIR -1 261 34 245 331 0 24 chr9 30265214 30265338 -112006106 + CT-rich Low_complexity Low_complexity 2 122 0 200 222 0 0 chr9 30265383 30265428 -112006016 + (TA)n Simple_repeat Simple_repeat 1 45 0 1811 126 23 0 chr9 30266080 30266341 -112005103 - AluSx SINE Alu -45 267 1 21 36 0 0 chr9 30267463 30267491 -112003953 + AT_rich Low_complexity Low_complexity 1 28 0 243 0 0 0 chr9 30267570 30267597 -112003847 + (CA)n Simple_repeat Simple_repeat 2 28 0 23 54 0 0 chr9 30268098 30268135 -112003309 + AT_rich Low_complexity Low_complexity 1 37 0 891 300 71 12 chr9 30269026 30269366 -112002078 - LTR33 LTR ERVL -158 363 4 436 287 127 33 chr9 30269433 30269614 -112001830 - MIR SINE MIR -56 206 3 239 143 41 0 chr9 30269889 30269938 -112001506 + GA-rich Low_complexity Low_complexity 4 54 0 6298 82 8 1 chr9 30270474 30271335 -112000109 + L1PA8A LINE L1 5265 6131 0 860 280 14 0 chr9 30271982 30272189 -111999255 + MER63A DNA MER1_type 1 210 0 186 288 0 17 chr9 30272223 30272282 -111999162 - MIR SINE MIR -116 92 35 303 210 30 20 chr9 30272853 30272953 -111998491 - L1ME LINE L1 -668 5453 5353 415 248 29 15 chr9 30273150 30273287 -111998157 - L1ME LINE L1 -437 5684 5546 1034 162 67 46 chr9 30274582 30274651 -111996793 + L1MA8 LINE L1 6002 6068 -223 2526 66 0 0 chr9 30274651 30274954 -111996490 + AluY SINE Alu 1 303 -8 1034 162 67 46 chr9 30274954 30275110 -111996334 + L1MA8 LINE L1 6068 6237 -54 267 31 0 0 chr9 30275110 30275142 -111996302 + (TA)n Simple_repeat Simple_repeat 1 32 0 1034 162 67 46 chr9 30275142 30275199 -111996245 + L1MA8 LINE L1 6237 6291 0 488 335 49 40 chr9 30275583 30275777 -111995667 + L2 LINE L2 2811 3009 -304 2520 57 0 0 chr9 30275777 30276075 -111995369 - AluY SINE Alu -13 298 1 488 335 49 40 chr9 30276075 30276104 -111995340 + L2 LINE L2 3009 3036 -277 23 33 0 0 chr9 30276134 30276164 -111995280 + AT_rich Low_complexity Low_complexity 1 30 0 369 296 0 53 chr9 30276191 30276343 -111995101 + MIR SINE MIR 114 257 -5 278 297 0 0 chr9 30277981 30278055 -111993389 + GA-rich Low_complexity Low_complexity 2 75 0 1385 266 70 36 chr9 30278379 30278796 -111992648 - LTR16C LTR ERVL 0 491 61 271 224 9 93 chr9 30279081 30279188 -111992256 + MIR SINE MIR 103 200 -62 300 216 78 39 chr9 30279227 30279329 -111992115 + L2 LINE L2 3191 3296 -17 230 333 94 38 chr9 30279345 30279504 -111991940 + MIR SINE MIR 20 187 -75 332 266 13 0 chr9 30279622 30279701 -111991743 + MER21B LTR ERV1 17 96 -767 627 204 53 8 chr9 30279746 30279878 -111991566 + MER21B LTR ERV1 103 240 -623 337 276 0 51 chr9 30279898 30279996 -111991448 + MER21B LTR ERV1 344 436 -427 358 322 72 7 chr9 30279996 30280148 -111991296 - MIR SINE MIR -72 190 29 2084 121 13 0 chr9 30280273 30280571 -111990873 - AluSc SINE Alu -7 302 1 270 56 0 0 chr9 30280864 30280900 -111990544 + (CA)n Simple_repeat Simple_repeat 1 36 0 350 272 32 24 chr9 30281215 30281340 -111990104 + L1ME2 LINE L1 6004 6129 -35 237 188 21 0 chr9 30281791 30281839 -111989605 - MIR SINE MIR -111 151 103 186 309 48 0 chr9 30282392 30282476 -111988968 + MIR SINE MIR 175 262 0 29 0 0 0 chr9 30283228 30283257 -111988187 + AT_rich Low_complexity Low_complexity 1 29 0 243 88 0 0 chr9 30283580 30283614 -111987830 + (GA)n Simple_repeat Simple_repeat 2 35 0 395 337 57 5 chr9 30283614 30283807 -111987637 + L1MEd LINE L1 534 736 -5383 775 276 82 44 chr9 30283842 30284317 -111987127 + L1ME3A LINE L1 5397 5889 -281 932 49 81 0 chr9 30284502 30284625 -111986819 - LTR12 LTR ERV1 0 714 582 5003 101 43 73 chr9 30284626 30285476 -111985968 - LTR12 LTR ERV1 -1 825 1 385 308 25 8 chr9 30287362 30287482 -111983962 + L2 LINE L2 3146 3267 -5 308 371 38 0 chr9 30287500 30287659 -111983785 + HAL1b LINE L1 377 541 -807 189 0 0 0 chr9 30288147 30288168 -111983276 + (TA)n Simple_repeat Simple_repeat 1 21 0 333 0 0 0 chr9 30289206 30289243 -111982201 + (CA)n Simple_repeat Simple_repeat 2 38 0 622 268 123 18 chr9 30289591 30289819 -111981625 - MIR SINE MIR -10 252 1 716 270 99 4 chr9 30290299 30290532 -111980912 - MIR SINE MIR -6 256 2 245 100 20 0 chr9 30291247 30291297 -111980147 + (TTTTTG)n Simple_repeat Simple_repeat 1 51 0 323 248 93 47 chr9 30292339 30292468 -111978976 - MER58B DNA MER1_type 0 341 207 472 335 37 20 chr9 30292641 30292886 -111978558 - L3 LINE CR1 -384 1193 945 35 71 0 0 chr9 30293361 30293431 -111978013 + AT_rich Low_complexity Low_complexity 1 70 0 2448 158 37 14 chr9 30294905 30295341 -111976103 - Tigger2 DNA MER2_type 0 2718 2273 385 203 0 0 chr9 30295331 30295400 -111976044 - Tigger2 DNA MER2_type -2649 69 1 * 23 0 0 0 chr9 30295400 30295423 -111976021 + AT_rich Low_complexity Low_complexity 1 23 0 187 316 18 18 chr9 30295650 30295707 -111975737 + MIR SINE MIR 11 67 -195 278 284 14 14 chr9 30295740 30295814 -111975630 - LTR16A LTR ERVL -14 436 363 461 284 38 33 chr9 30295821 30296004 -111975440 - LTR16A1 LTR ERVL -214 243 60 237 33 0 0 chr9 30296208 30296238 -111975206 + (TTCTC)n Simple_repeat Simple_repeat 2 31 0 637 345 35 60 chr9 30296240 30296860 -111974584 - ERVL LTR ERVL -441 5323 4719 374 352 55 36 chr9 30296858 30297259 -111974185 - ERVL LTR ERVL -868 4617 4250 * 429 20 0 0 chr9 30297358 30297408 -111974036 + (TG)n Simple_repeat Simple_repeat 2 51 0 230 308 26 0 chr9 30297673 30297751 -111973693 + MIR SINE MIR 77 156 -106 22 70 0 0 chr9 30298095 30298138 -111973306 + AT_rich Low_complexity Low_complexity 1 43 0 198 71 0 0 chr9 30298263 30298291 -111973153 + (TA)n Simple_repeat Simple_repeat 1 28 0 392 211 0 0 chr9 30298381 30298457 -111972987 + MIR SINE MIR 117 192 -70 2399 90 0 0 chr9 30298580 30298880 -111972564 - AluSq SINE Alu -13 300 1 23 33 0 0 chr9 30299416 30299446 -111971998 + AT_rich Low_complexity Low_complexity 1 30 0 1935 185 34 42 chr9 30299680 30300151 -111971293 - L1MA7 LINE L1 0 6291 5825 21 36 0 0 chr9 30300367 30300395 -111971049 + AT_rich Low_complexity Low_complexity 1 28 0 183 100 0 0 chr9 30300398 30300428 -111971016 + (TCCA)n Simple_repeat Simple_repeat 3 32 0 1526 206 54 9 chr9 30300871 30301220 -111970224 + MLT1A1 LTR MaLR 1 365 0 184 340 0 0 chr9 30302493 30302540 -111968904 + L3 LINE CR1 1060 1106 -471 1051 271 97 98 chr9 30303081 30303602 -111967842 + HAL1 LINE L1 2 522 -1985 2614 51 0 0 chr9 30303602 30303913 -111967531 + AluY SINE Alu 1 311 0 1051 271 97 98 chr9 30303913 30304950 -111966494 + HAL1 LINE L1 522 1559 -948 920 255 90 65 chr9 30304960 30305494 -111965950 + HAL1 LINE L1 1731 2277 -230 33 25 0 0 chr9 30305728 30305768 -111965676 + AT_rich Low_complexity Low_complexity 1 40 0 385 357 106 4 chr9 30305964 30306199 -111965245 + L3 LINE CR1 1232 1490 -87 186 227 0 0 chr9 30306690 30306734 -111964710 + A-rich Low_complexity Low_complexity 4 47 0 472 259 117 25 chr9 30309259 30309421 -111962023 + MIR SINE MIR 21 197 -65 2291 101 7 0 chr9 30309729 30310035 -111961409 + AluSp SINE Alu 1 308 -5 366 183 0 0 chr9 30310222 30310293 -111961151 + (CA)n Simple_repeat Simple_repeat 2 72 0 193 259 65 111 chr9 30310369 30310477 -111960967 + MER5A DNA MER1_type 65 167 -22 285 222 43 103 chr9 30310564 30310681 -111960763 + MIR SINE MIR 71 180 -82 341 204 46 125 chr9 30310891 30311043 -111960401 - MER112 DNA MER1_type -1 259 120 2552 168 95 6 chr9 30311067 30311572 -111959872 - MER44D DNA MER2_type 0 605 1 491 138 38 0 chr9 30311800 30311880 -111959564 + MER44D DNA MER2_type 575 657 -48 410 359 28 38 chr9 30312351 30312604 -111958840 - MIR SINE MIR -2 260 8 308 281 94 23 chr9 30313731 30313859 -111957585 - MIR SINE MIR -20 242 106 212 267 0 40 chr9 30314071 30314146 -111957298 - L2 LINE L2 -6 3307 3236 * 696 237 137 14 chr9 30314142 30314361 -111957083 + MIR SINE MIR 13 258 -4 22 35 0 0 chr9 30315497 30315526 -111955918 + AT_rich Low_complexity Low_complexity 1 29 0 771 288 80 11 chr9 30315617 30315881 -111955563 + L3 LINE CR1 1275 1556 -21 255 330 103 32 chr9 30315951 30316136 -111955308 + MIR SINE MIR 6 203 -59 432 0 0 0 chr9 30317086 30317134 -111954310 + (CA)n Simple_repeat Simple_repeat 1 48 0 * 864 92 0 0 chr9 30317133 30317274 -111954170 + (GA)n Simple_repeat Simple_repeat 2 142 0 37039 33 17 1 chr9 30318335 30324363 -111947081 - L1PA2 LINE L1 -2 6153 1 567 259 12 53 chr9 30324701 30324871 -111946573 - MER5B DNA MER1_type -1 177 15 197 358 0 0 chr9 30324914 30324981 -111946463 + L2 LINE L2 3244 3310 -3 5214 122 49 5 chr9 30325443 30326428 -111945016 + L1PA13 LINE L1 5128 6150 -13 1658 258 39 18 chr9 30327099 30327632 -111943812 - MER119 DNA MER1_type 0 583 6 21 0 0 0 chr9 30327812 30327833 -111943611 + AT_rich Low_complexity Low_complexity 1 21 0 334 261 71 63 chr9 30327842 30328080 -111943364 - L1ME4a LINE L1 -3 6118 5879 27 0 0 0 chr9 30331250 30331277 -111940167 + AT_rich Low_complexity Low_complexity 1 27 0 579 323 84 18 chr9 30332176 30332402 -111939042 - MIR SINE MIR -16 246 6 327 266 62 16 chr9 30332993 30333121 -111938323 - MIR SINE MIR -10 252 119 207 0 0 0 chr9 30333541 30333564 -111937880 + (TTTG)n Simple_repeat Simple_repeat 3 25 0 2429 127 14 0 chr9 30333599 30333969 -111937475 - THE1C LTR MaLR 0 375 1 7466 137 3 16 chr9 30333969 30335129 -111936315 - THE1C-int LTR MaLR 0 1580 435 30 45 0 0 chr9 30335169 30335213 -111936231 + AT_rich Low_complexity Low_complexity 1 44 0 330 251 62 56 chr9 30335253 30335432 -111936012 - L1ME4a LINE L1 -18 6103 5924 27 0 0 0 chr9 30335449 30335476 -111935968 + AT_rich Low_complexity Low_complexity 1 27 0 27 29 0 0 chr9 30335605 30335639 -111935805 + AT_rich Low_complexity Low_complexity 1 34 0 2236 228 44 9 chr9 30335767 30336719 -111934725 + L1MC/D LINE L1 4830 5815 -427 21 0 0 0 chr9 30337405 30337426 -111934018 + AT_rich Low_complexity Low_complexity 1 21 0 340 280 11 0 chr9 30337905 30337998 -111933446 - MIR SINE MIR -10 252 159 418 111 111 0 chr9 30340161 30340233 -111931211 - MADE1 DNA Mariner 0 80 1 1664 191 3 3 chr9 30340696 30340994 -111930450 + AluJb SINE Alu 5 302 -10 32 57 0 0 chr9 30341391 30341444 -111930000 + AT_rich Low_complexity Low_complexity 1 53 0 947 134 23 23 chr9 30342001 30342155 -111929289 + L1MC2 LINE L1 6155 6311 -33 1277 216 45 66 chr9 30342155 30342535 -111928909 - MLT1A2 LTR MaLR -2 372 1 947 134 23 23 chr9 30342535 30342552 -111928892 + L1MC2 LINE L1 6310 6326 -18 289 298 23 38 chr9 30342687 30342818 -111928626 - L2 LINE L2 -186 3086 2958 207 125 0 83 chr9 30342839 30342887 -111928557 - L2 LINE L2 -293 2979 2936 197 341 82 11 chr9 30343858 30344040 -111927404 - L3 LINE CR1 -1303 274 80 327 130 0 0 chr9 30344564 30344618 -111926826 + (TTCC)n Simple_repeat Simple_repeat 3 56 0 1828 171 51 14 chr9 30345203 30345553 -111925891 - MLT1A1 LTR MaLR -2 363 1 387 255 26 113 chr9 30345787 30346018 -111925426 - L2 LINE L2 -2 3311 3101 2081 135 0 0 chr9 30346193 30346490 -111924954 + AluSg SINE Alu 1 297 -13 2115 209 53 51 chr9 30346506 30346699 -111924745 - MER67D LTR ERV1 0 514 323 2215 113 36 33 chr9 30346699 30347062 -111924382 - THE1B LTR MaLR 0 364 1 2115 209 53 51 chr9 30347062 30347381 -111924063 - MER67D LTR ERV1 -191 323 1 236 154 19 0 chr9 30347394 30347446 -111923998 + GA-rich Low_complexity Low_complexity 1 53 0 3683 136 55 2 chr9 30347542 30348145 -111923299 - MER41B LTR ERV1 0 635 1 540 228 10 93 chr9 30348188 30348381 -111923063 - MER69A DNA AcHobo 0 177 1 2142 121 0 0 chr9 30348896 30349178 -111922266 - AluSx SINE Alu -28 284 3 356 284 93 12 chr9 30349833 30349995 -111921449 + MIR SINE MIR 2 176 -86 378 0 0 0 chr9 30350017 30350059 -111921385 + (TG)n Simple_repeat Simple_repeat 2 43 0 565 364 148 6 chr9 30350157 30350548 -111920896 - L2 LINE L2 -199 3114 2669 226 231 0 19 chr9 30350939 30350991 -111920453 + LTR67 LTR ERVL 507 557 0 199 211 26 0 chr9 30351039 30351077 -111920367 - MIR SINE MIR -132 76 38 23 33 0 0 chr9 30351424 30351454 -111919990 + AT_rich Low_complexity Low_complexity 1 30 0 413 340 35 7 chr9 30352191 30352335 -111919109 + MIR3 SINE MIR 23 170 -38 305 294 39 0 chr9 30352611 30352632 -111918812 - L1MA10 LINE L1 -2 6332 6312 1181 240 78 0 chr9 30352632 30352940 -111918504 - L1ME1 LINE L1 -15 6151 5820 1093 220 61 45 chr9 30352958 30353271 -111918173 + MLT1E2 LTR MaLR 1 318 -308 505 266 101 28 chr9 30353481 30353699 -111917745 + MIR SINE MIR 29 262 0 191 257 119 79 chr9 30353905 30354006 -111917438 + MIR SINE MIR 11 115 -147 22 0 0 0 chr9 30356295 30356317 -111915127 + AT_rich Low_complexity Low_complexity 1 22 0 739 274 4 90 chr9 30356323 30356589 -111914855 - MIR SINE MIR -4 258 16 299 200 67 22 chr9 30356731 30356821 -111914623 - Charlie7 DNA MER1_type -2518 94 1 1865 118 7 7 chr9 30357077 30357356 -111914088 - AluSg1 SINE Alu -11 298 20 2351 45 0 78 chr9 30357463 30357795 -111913649 - AluY SINE Alu -5 306 1 211 264 167 0 chr9 30357913 30357985 -111913459 + MIR SINE MIR 61 144 -64 2329 64 0 3 chr9 30358264 30358561 -111912883 + AluY SINE Alu 1 296 -15 22 0 0 0 chr9 30360180 30360202 -111911242 + AT_rich Low_complexity Low_complexity 1 22 0 7574 90 15 14 chr9 30360436 30361492 -111909952 + MER11C LTR ERVK 1 1057 -14 2447 246 25 65 chr9 30361754 30362845 -111908599 - L1ME1 LINE L1 -5 6161 5127 20721 30 0 0 chr9 30362902 30366156 -111905288 - L1PA3 LINE L1 0 6155 2902 183 220 0 0 chr9 30366156 30366206 -111905238 + CT-rich Low_complexity Low_complexity 3 52 0 273 350 86 14 chr9 30366220 30366360 -111905084 - L2 LINE L2 -5 3267 3118 365 210 217 7 chr9 30366652 30366790 -111904654 + L1ME2 LINE L1 4479 4645 -1501 * 2214 215 41 20 chr9 30366788 30367401 -111904043 - L1ME1 LINE L1 -1661 4485 3860 318 205 134 18 chr9 30367741 30367853 -111903591 + L1ME2 LINE L1 5574 5698 -466 903 236 38 4 chr9 30367856 30368093 -111903351 + L1ME2 LINE L1 5905 6149 -15 323 248 20 20 chr9 30368103 30368252 -111903192 + (TA)n Simple_repeat Simple_repeat 2 150 0 28 0 0 0 chr9 30368252 30368280 -111903164 + AT_rich Low_complexity Low_complexity 1 28 0 330 238 0 12 chr9 30368295 30368379 -111903065 - LTR67 LTR ERVL 0 557 475 426 174 0 0 chr9 30368538 30368607 -111902837 + Tigger2 DNA MER2_type 1 69 -2649 * 2378 165 23 21 chr9 30368605 30369042 -111902402 + Tigger2 DNA MER2_type 2280 2717 -1 503 290 105 0 chr9 30369538 30369700 -111901744 + MIR SINE MIR 52 230 -32 1720 170 29 0 chr9 30369824 30370101 -111901343 - AluJb SINE Alu -27 285 1 838 239 18 0 chr9 30370314 30370536 -111900908 - L1PA15-16 LINE L1 -4049 2800 2575 12958 32 0 3 chr9 30422134 30424222 -111847222 + L1PA4 LINE L1 3817 5899 -256 579 286 111 24 chr9 30426345 30426722 -111844722 + HAL1 LINE L1 2097 2506 -1 1646 164 124 0 chr9 30427169 30427492 -111843952 - MER47A DNA MER2_type -3 363 1 289 331 30 15 chr9 30427499 30427632 -111843812 + L1MEd LINE L1 455 589 -5530 280 217 86 59 chr9 30427634 30427786 -111843658 + MER53 DNA DNA 1 156 -33 690 0 0 34 chr9 30427886 30427975 -111843469 + AluY SINE Alu 218 303 -8 1232 239 66 37 chr9 30428746 30429127 -111842317 - MSTD LTR MaLR 0 396 5 189 367 135 32 chr9 30432811 30433182 -111838262 + L2 LINE L2 2824 3232 -40 3187 169 38 63 chr9 30433290 30434034 -111837410 - LTR8A LTR ERV1 0 727 3 380 204 0 0 chr9 30434163 30434251 -111837193 + L1PB1 LINE L1 6060 6147 -4 2206 199 2 7 chr9 30434559 30434975 -111836469 + MER47B DNA MER2_type 5 418 0 240 35 0 0 chr9 30435007 30435036 -111836408 + (TG)n Simple_repeat Simple_repeat 2 30 0 2120 156 8 77 chr9 30435253 30435537 -111835907 - L1PA16 LINE L1 -6 6160 5923 2110 95 20 3 chr9 30435537 30435842 -111835602 - AluSg SINE Alu 0 310 1 2120 156 8 77 chr9 30435842 30436052 -111835392 - L1PA16 LINE L1 -243 5923 5700 303 287 88 22 chr9 30436071 30436207 -111835237 - MIR3 SINE MIR -32 176 32 302 305 48 19 chr9 30439128 30439233 -111832211 + L2 LINE L2 3204 3311 -2 552 310 39 0 chr9 30439332 30439487 -111831957 + MIR SINE MIR 49 209 -53 4892 169 29 15 chr9 30441018 30442007 -111829437 - L1MA9 LINE L1 0 6312 5310 1386 263 21 5 chr9 30442042 30442464 -111828980 - L1M2 LINE L1 -4171 2678 2250 1336 171 4 12 chr9 30442481 30442738 -111828706 - L1PA13 LINE L1 -15 6148 5894 699 236 12 19 chr9 30442745 30442906 -111828538 - L1M2 LINE L1 -5979 800 641 288 0 0 0 chr9 30443137 30443169 -111828275 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 3665 176 3 11 chr9 30443169 30443821 -111827623 - L1PA16 LINE L1 -24 6142 5496 2333 46 0 11 chr9 30445117 30445401 -111826043 + AluY SINE Alu 8 288 -23 28 0 0 0 chr9 30445448 30445476 -111825968 + AT_rich Low_complexity Low_complexity 1 28 0 2037 86 11 4 chr9 30445482 30445751 -111825693 + AluY SINE Alu 4 274 -37 784 206 111 5 chr9 30446049 30446238 -111825206 + MER3 DNA MER1_type 1 209 0 492 301 0 47 chr9 30447666 30447818 -111823626 + MIR SINE MIR 15 154 -108 1989 124 3 0 chr9 30447818 30448138 -111823306 + AluSx SINE Alu 1 321 0 492 301 0 47 chr9 30448138 30448193 -111823251 + MIR SINE MIR 154 210 -52 219 88 0 0 chr9 30448472 30448506 -111822938 + (T)n Simple_repeat Simple_repeat 1 34 0 313 247 0 52 chr9 30449185 30449282 -111822162 - L1MC4 LINE L1 -1339 6703 6612 366 97 80 0 chr9 30449286 30449399 -111822045 + (TA)n Simple_repeat Simple_repeat 1 122 0 26 0 0 0 chr9 30449437 30449463 -111821981 + AT_rich Low_complexity Low_complexity 1 26 0 1790 158 0 27 chr9 30449989 30450286 -111821158 + AluJb SINE Alu 1 289 -23 26 30 0 0 chr9 30450286 30450319 -111821125 + AT_rich Low_complexity Low_complexity 1 33 0 1279 253 36 39 chr9 30450387 30450802 -111820642 - MLT2D LTR ERVL 0 414 1 889 328 70 37 chr9 30452237 30452752 -111818692 + HAL1 LINE L1 215 746 -1761 35097 37 1 0 chr9 30452806 30457886 -111813558 - L1PA2 LINE L1 -2 6153 1067 1361 271 147 71 chr9 30457888 30459444 -111812000 + HAL1 LINE L1 833 2507 0 231 264 23 11 chr9 30460168 30460255 -111811189 - L1ME LINE L1 -297 5873 5786 635 247 98 51 chr9 30460328 30460757 -111810687 + L1MEd LINE L1 702 1150 -4969 390 300 122 27 chr9 30460841 30461104 -111810340 + L1MEd LINE L1 1282 1569 -4741 361 300 76 34 chr9 30461320 30461624 -111809820 + L1ME LINE L1 5468 5777 -401 2186 124 0 0 chr9 30462233 30462540 -111808904 - AluSc SINE Alu -2 307 1 233 287 62 31 chr9 30462891 30463020 -111808424 + LTR67 LTR ERVL 410 542 -15 3571 156 98 3 chr9 30464111 30464757 -111806687 + MER39 LTR ERV1 1 707 0 468 115 10 7 chr9 30464843 30464931 -111806513 - L1MA8 LINE L1 -326 5976 5888 266 350 43 29 chr9 30465015 30465155 -111806289 + MIR SINE MIR 1 142 -120 204 299 27 102 chr9 30465873 30466020 -111805424 + MIR SINE MIR 117 252 -10 * 234 269 51 26 chr9 30466018 30466096 -111805348 + MIR3 SINE MIR 105 184 -24 211 91 55 36 chr9 30466169 30466224 -111805220 + (TATAA)n Simple_repeat Simple_repeat 2 57 0 23 0 0 0 chr9 30466225 30466248 -111805196 + AT_rich Low_complexity Low_complexity 1 23 0 1867 168 7 0 chr9 30466732 30467041 -111804403 - AluSq SINE Alu -2 311 1 252 365 61 33 chr9 30468107 30468288 -111803156 + MER5A DNA MER1_type 3 188 -1 627 307 130 18 chr9 30468584 30468985 -111802459 + LTR16A LTR ERVL 3 448 -2 1660 174 0 7 chr9 30470402 30470677 -111800767 + AluJb SINE Alu 1 273 -39 330 67 0 0 chr9 30470677 30470722 -111800722 + (GA)n Simple_repeat Simple_repeat 1 45 0 373 315 56 0 chr9 30471609 30471717 -111799727 - L2 LINE L2 -3 3269 3156 22 56 0 0 chr9 30471986 30472022 -111799422 + AT_rich Low_complexity Low_complexity 1 36 0 1124 189 115 72 chr9 30472081 30472430 -111799014 + MLT1A1 LTR MaLR 1 364 -1 216 41 0 82 chr9 30472698 30472747 -111798697 + (TTTTA)n Simple_repeat Simple_repeat 5 49 0 275 306 41 8 chr9 30472841 30472962 -111798482 - L1MEc LINE L1 -4742 1568 1255 21 0 0 0 chr9 30473079 30473100 -111798344 + AT_rich Low_complexity Low_complexity 1 21 0 334 280 60 60 chr9 30473124 30473374 -111798070 - L1MEc LINE L1 -4898 1221 972 1896 222 24 17 chr9 30473647 30474111 -111797333 - MLT1C LTR MaLR 0 467 1 29 60 0 0 chr9 30474908 30474958 -111796486 + AT_rich Low_complexity Low_complexity 1 50 0 302 221 47 23 chr9 30474989 30475075 -111796369 - L1MEc LINE L1 -5785 334 247 233 256 12 0 chr9 30475218 30475300 -111796144 + (TG)n Simple_repeat Simple_repeat 1 83 0 411 311 61 20 chr9 30475671 30475967 -111795477 - L1ME4a LINE L1 -237 5884 5577 2309 96 0 0 chr9 30476168 30476461 -111794983 - AluSx SINE Alu -11 301 9 31 58 0 0 chr9 30476467 30476519 -111794925 + AT_rich Low_complexity Low_complexity 1 52 0 306 323 30 37 chr9 30476829 30476993 -111794451 + MIR SINE MIR 79 241 -21 342 0 0 0 chr9 30478352 30478390 -111793054 + (ATG)n Simple_repeat Simple_repeat 2 39 0 2025 128 0 0 chr9 30478391 30478673 -111792771 - AluSx SINE Alu -30 282 1 199 271 57 14 chr9 30479585 30479655 -111791789 + MIR SINE MIR 182 254 -8 23 0 0 0 chr9 30479669 30479692 -111791752 + AT_rich Low_complexity Low_complexity 1 23 0 2153 158 30 32 chr9 30480259 30480697 -111790747 - L1PA15 LINE L1 -5 6160 5724 24 32 0 0 chr9 30481909 30481940 -111789504 + AT_rich Low_complexity Low_complexity 1 31 0 36 40 0 0 chr9 30481952 30482002 -111789442 + AT_rich Low_complexity Low_complexity 1 50 0 22 0 0 0 chr9 30482275 30482297 -111789147 + AT_rich Low_complexity Low_complexity 1 22 0 30 27 0 0 chr9 30482954 30482991 -111788453 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr9 30483558 30483579 -111787865 + AT_rich Low_complexity Low_complexity 1 21 0 312 333 17 64 chr9 30484206 30484290 -111787154 + L3 LINE CR1 1092 1178 -399 1957 154 7 0 chr9 30484290 30484595 -111786849 - AluSx SINE Alu -3 309 3 312 333 17 64 chr9 30484595 30484744 -111786700 + L3 LINE CR1 1178 1314 -263 25 31 0 0 chr9 30485111 30485143 -111786301 + AT_rich Low_complexity Low_complexity 1 32 0 278 312 115 6 chr9 30485269 30485426 -111786018 + MIR SINE MIR 13 186 -76 2377 77 3 0 chr9 30485867 30486167 -111785277 + AluSq SINE Alu 1 301 -12 212 281 220 83 chr9 30486968 30487020 -111784424 - L2 LINE L2 0 3313 3270 345 109 0 0 chr9 30487020 30487075 -111784369 + (TA)n Simple_repeat Simple_repeat 1 55 0 212 281 220 83 chr9 30487075 30487335 -111784109 - L2 LINE L2 -43 3270 2958 1981 134 0 7 chr9 30488582 30488887 -111782557 + AluSx SINE Alu 1 303 -9 678 293 40 0 chr9 30489271 30489445 -111781999 - MIR SINE MIR -9 253 73 825 281 96 65 chr9 30490559 30491050 -111780394 - MLT1H LTR MaLR -32 517 12 21 0 0 0 chr9 30491521 30491542 -111779902 + AT_rich Low_complexity Low_complexity 1 21 0 210 244 17 61 chr9 30491653 30491768 -111779676 + T-rich Low_complexity Low_complexity 1 110 0 251 287 67 70 chr9 30492031 30492304 -111779140 - L1M4c LINE L1 -4608 1955 1682 1741 177 30 7 chr9 30492304 30492609 -111778835 + AluJo SINE Alu 1 312 0 251 287 67 70 chr9 30492609 30492878 -111778566 - L1M4c LINE L1 -4881 1682 1265 808 222 87 14 chr9 30492985 30493260 -111778184 - L1MC4 LINE L1 -13 8029 7735 266 153 119 17 chr9 30493264 30493323 -111778121 - MLT1F LTR MaLR 0 542 441 4531 249 27 9 chr9 30493348 30494735 -111776709 + L1M4 LINE L1 2170 3581 -2565 558 208 27 7 chr9 30494738 30494887 -111776557 + L1MB3 LINE L1 6032 6183 0 1104 256 193 12 chr9 30494904 30495334 -111776110 - MLT1F1 LTR MaLR -52 515 8 1301 217 122 60 chr9 30495339 30495822 -111775622 - L1MC4 LINE L1 -306 7736 7224 2424 124 8 21 chr9 30496128 30496508 -111774936 - THE1C LTR MaLR 0 375 1 1729 120 4 4 chr9 30496508 30496766 -111774678 - THE1C-int LTR MaLR 0 1580 1323 922 159 16 23 chr9 30496766 30496994 -111774450 - THE1C LTR MaLR -71 293 1 315 335 27 8 chr9 30497159 30497348 -111774096 - MIR SINE MIR -17 245 9 293 345 176 7 chr9 30497428 30497570 -111773874 - MIR3 SINE MIR -12 196 31 375 261 73 111 chr9 30498578 30498919 -111772525 + MLT1I LTR MaLR 46 373 -36 2101 99 27 3 chr9 30500852 30501144 -111770300 - AluY SINE Alu -12 299 1 22 0 0 0 chr9 30502263 30502285 -111769159 + AT_rich Low_complexity Low_complexity 1 22 0 340 302 201 0 chr9 30502546 30502705 -111768739 + MIR SINE MIR 8 198 -64 204 211 0 0 chr9 30502748 30502786 -111768658 + (CTA)n Simple_repeat Simple_repeat 1 38 0 240 111 0 0 chr9 30504141 30504177 -111767267 + (A)n Simple_repeat Simple_repeat 1 36 0 425 352 28 20 chr9 30505930 30506180 -111765264 - MIR SINE MIR -2 260 9 22 0 0 0 chr9 30507186 30507208 -111764236 + AT_rich Low_complexity Low_complexity 1 22 0 6041 152 26 18 chr9 30507224 30509092 -111762352 - L1MA2 LINE L1 -12 6292 4408 25 31 0 0 chr9 30509930 30509962 -111761482 + AT_rich Low_complexity Low_complexity 1 32 0 213 39 0 0 chr9 30509963 30509989 -111761455 + (CA)n Simple_repeat Simple_repeat 1 26 0 2411 55 0 10 chr9 30510717 30511009 -111760435 + AluY SINE Alu 1 289 -22 35204 49 2 1 chr9 30511010 30516240 -111755204 + L1PA5 LINE L1 934 6165 0 23 54 0 0 chr9 30516407 30516444 -111755000 + AT_rich Low_complexity Low_complexity 1 37 0 468 257 139 46 chr9 30516826 30517063 -111754381 - MLT1K LTR MaLR -10 578 320 2217 125 3 0 chr9 30517267 30517579 -111753865 + AluSq SINE Alu 1 313 0 234 296 51 41 chr9 30518186 30518284 -111753160 - L2 LINE L2 0 3313 3215 2511 119 19 41 chr9 30518747 30519139 -111752305 + MLT2A1 LTR ERVL 1 385 -59 288 0 0 0 chr9 30519139 30519171 -111752273 + (TC)n Simple_repeat Simple_repeat 2 33 0 2511 119 19 41 chr9 30519171 30519191 -111752253 + MLT2A1 LTR ERVL 385 404 -40 594 143 28 12 chr9 30519202 30519532 -111751912 + (TA)n Simple_repeat Simple_repeat 1 335 0 264 53 0 26 chr9 30519545 30519583 -111751861 + MLT2A1 LTR ERVL 408 444 0 274 291 152 89 chr9 30519879 30520181 -111751263 + L2 LINE L2 2952 3272 0 278 344 27 38 chr9 30520190 30520376 -111751068 + MER117 DNA MER1_type 10 193 -4 1495 70 25 0 chr9 30520488 30520689 -111750755 + L1PA5 LINE L1 4829 5034 -1112 1486 62 5 0 chr9 30520689 30520934 -111750510 + L1PA5 LINE L1 5944 6193 0 482 243 15 15 chr9 30520971 30521107 -111750337 - L1MD2 LINE L1 -13 6346 6211 995 26 0 0 chr9 30521832 30521949 -111749495 - L1PA2 LINE L1 -2 6153 6037 1868 26 4 0 chr9 30521949 30522175 -111749269 + L1PA2 LINE L1 5821 6047 -108 249 311 56 0 chr9 30522956 30523046 -111748398 + MIR SINE MIR 156 250 -12 22 0 0 0 chr9 30524113 30524135 -111747309 + AT_rich Low_complexity Low_complexity 1 22 0 519 326 120 13 chr9 30524362 30524678 -111746766 + L1ME LINE L1 61 410 -5986 554 282 91 18 chr9 30525024 30525364 -111746080 + L1ME LINE L1 810 1174 -5222 1207 246 153 13 chr9 30525396 30526035 -111745409 + L1ME LINE L1 4901 5681 -552 221 0 35 0 chr9 30526035 30526064 -111745380 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 1207 246 153 13 chr9 30526064 30526154 -111745290 + L1ME LINE L1 5681 5757 -476 21 36 0 0 chr9 30526158 30526186 -111745258 + AT_rich Low_complexity Low_complexity 1 28 0 497 230 54 0 chr9 30526189 30526400 -111745044 + L1ME2 LINE L1 2315 5888 -347 23 33 0 0 chr9 30526428 30526458 -111744986 + AT_rich Low_complexity Low_complexity 1 30 0 4486 190 12 10 chr9 30526478 30527298 -111744146 + L1MA2 LINE L1 14 835 -6730 * 9157 146 23 24 chr9 30527296 30530031 -111741413 + L1MA2 LINE L1 4989 7723 0 346 151 35 81 chr9 30530067 30530153 -111741291 + Tigger1 DNA MER2_type 70 151 -2267 * 1198 136 41 18 chr9 30530150 30530371 -111741073 + Tigger1 DNA MER2_type 2192 2417 -1 385 194 102 174 chr9 30530442 30530735 -111740709 + L1ME2 LINE L1 5906 6177 -58 2223 97 0 0 chr9 30531061 30531372 -111740072 - L1PA13 LINE L1 -4 6159 5849 266 287 20 10 chr9 30533046 30533147 -111738297 - MIR SINE MIR -12 250 149 266 220 0 0 chr9 30533184 30533234 -111738210 - L2 LINE L2 0 3272 3223 753 325 114 20 chr9 30533388 30533896 -111737548 - L2 LINE L2 -435 2879 2324 2368 43 0 0 chr9 30534462 30534766 -111736678 + AluY SINE Alu 3 306 0 971 226 83 43 chr9 30535883 30536225 -111735219 - L1ME3A LINE L1 -5 6165 5811 22 35 0 0 chr9 30536486 30536515 -111734929 + AT_rich Low_complexity Low_complexity 1 29 0 434 267 35 0 chr9 30536532 30536648 -111734796 - L2 LINE L2 -3 3310 3191 408 266 143 19 chr9 30537992 30538146 -111733298 + MER58 DNA MER1_type 1 173 -2247 211 250 0 19 chr9 30538581 30538689 -111732755 + (TA)n Simple_repeat Simple_repeat 2 107 0 1867 141 35 40 chr9 30538825 30539202 -111732242 - THE1C LTR MaLR 0 375 1 2474 157 71 7 chr9 30539208 30539642 -111731802 - THE1C-int LTR MaLR -5 1575 1114 314 190 0 0 chr9 30539639 30539697 -111731747 + L1MA9 LINE L1 5722 5779 -512 * 1249 239 17 3 chr9 30539697 30539986 -111731458 + AluJo SINE Alu 5 297 -15 378 62 0 0 chr9 30539988 30540036 -111731408 + AluY SINE Alu 3 50 -250 1500 78 0 0 chr9 30540036 30540271 -111731173 + AluY SINE Alu 102 311 0 2407 166 33 55 chr9 30540301 30540683 -111730761 + L1MA9 LINE L1 5783 6151 -161 198 0 0 0 chr9 30540683 30540705 -111730739 + (CA)n Simple_repeat Simple_repeat 1 22 0 2407 166 33 55 chr9 30540705 30540864 -111730580 + L1MA9 LINE L1 6151 6312 0 1098 232 27 59 chr9 30541296 30541671 -111729773 - MLT1A1 LTR MaLR 0 365 3 502 335 116 61 chr9 30541968 30542673 -111728771 - L1MC4a LINE L1 -161 6009 5266 21 57 0 0 chr9 30542864 30542899 -111728545 + AT_rich Low_complexity Low_complexity 1 35 0 21 57 0 0 chr9 30543739 30543774 -111727670 + AT_rich Low_complexity Low_complexity 1 35 0 296 282 56 80 chr9 30544231 30544444 -111727000 + MLT1K LTR MaLR 166 373 -215 493 293 145 4 chr9 30544675 30544924 -111726520 - Charlie7 DNA MER1_type -2292 320 37 905 213 33 9 chr9 30546124 30546335 -111725109 - MER58A DNA MER1_type -8 216 1 821 210 93 40 chr9 30546699 30546999 -111724445 - MER33 DNA MER1_type -7 317 2 284 274 301 27 chr9 30546999 30547185 -111724259 + MIR SINE MIR 8 244 -18 322 247 24 12 chr9 30548668 30548753 -111722691 - L2 LINE L2 0 3313 3228 207 0 0 0 chr9 30549727 30549750 -111721694 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 725 245 101 32 chr9 30549797 30550075 -111721369 + LTR16A1 LTR ERVL 159 455 -2 26 0 0 0 chr9 30551418 30551444 -111720000 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr9 30552222 30552243 -111719201 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr9 30552497 30552520 -111718924 + AT_rich Low_complexity Low_complexity 1 23 0 204 122 0 0 chr9 30553595 30553636 -111717808 + (T)n Simple_repeat Simple_repeat 1 41 0 1990 136 0 0 chr9 30553990 30554276 -111717168 + AluSx SINE Alu 1 286 -26 336 94 0 0 chr9 30554276 30554329 -111717115 + (CATA)n Simple_repeat Simple_repeat 2 54 0 204 364 23 11 chr9 30558291 30558379 -111713065 + MIR SINE MIR 13 101 -161 249 211 19 149 chr9 30558684 30558845 -111712599 + MIR SINE MIR 122 261 -1 744 327 75 42 chr9 30559297 30559749 -111711695 + MLT1K LTR MaLR 101 567 -21 257 287 96 11 chr9 30559823 30559917 -111711527 + MIR SINE MIR 107 208 -54 26 0 0 0 chr9 30560725 30560751 -111710693 + AT_rich Low_complexity Low_complexity 1 26 0 180 0 0 0 chr9 30560974 30560994 -111710450 + (CA)n Simple_repeat Simple_repeat 1 20 0 21 71 0 0 chr9 30560995 30561037 -111710407 + AT_rich Low_complexity Low_complexity 1 42 0 29 60 0 0 chr9 30561186 30561236 -111710208 + AT_rich Low_complexity Low_complexity 1 50 0 210 37 0 0 chr9 30561667 30561694 -111709750 + (TGG)n Simple_repeat Simple_repeat 1 27 0 682 294 132 0 chr9 30562059 30562287 -111709157 - MIR SINE MIR -4 258 1 186 406 24 32 chr9 30562409 30562532 -111708912 + L2 LINE L2 3149 3270 -2 574 336 69 42 chr9 30562973 30563453 -111707991 + L2 LINE L2 2537 3051 -221 707 305 47 8 chr9 30563518 30563754 -111707690 + MIR SINE MIR 6 250 -12 189 357 25 57 chr9 30563780 30563937 -111707507 + L2 LINE L2 3158 3309 -4 27 0 0 0 chr9 30563972 30563999 -111707445 + AT_rich Low_complexity Low_complexity 1 27 0 469 213 0 19 chr9 30564565 30564673 -111706771 - L1MA10 LINE L1 -7 6327 6222 29 0 0 0 chr9 30564705 30564734 -111706710 + AT_rich Low_complexity Low_complexity 1 29 0 4833 174 36 40 chr9 30564855 30566199 -111705245 - L1MA8 LINE L1 -6 6285 4937 223 295 162 48 chr9 30566996 30567101 -111704343 - MIR SINE MIR -71 137 21 228 147 0 0 chr9 30568873 30568907 -111702537 + L2 LINE L2 3264 3297 -16 2557 48 0 6 chr9 30569219 30569532 -111701912 - AluY SINE Alu 0 311 1 1705 125 9 92 chr9 30569532 30569860 -111701584 - AluSx SINE Alu -9 303 3 2940 126 7 2 chr9 30569864 30570318 -111701126 - L1PA15 LINE L1 0 6165 5710 270 0 0 0 chr9 30571021 30571051 -111700393 + (TG)n Simple_repeat Simple_repeat 1 30 0 794 261 51 114 chr9 30573980 30574409 -111697035 + MLT1E1 LTR MaLR 20 421 -172 6237 86 5 20 chr9 30574409 30575297 -111696147 + L1PA11 LINE L1 5301 6174 0 845 213 6 6 chr9 30575321 30575485 -111695959 + MLT1E1 LTR MaLR 491 654 0 22 0 0 0 chr9 30576748 30576770 -111694674 + AT_rich Low_complexity Low_complexity 1 22 0 214 353 98 21 chr9 30576845 30577080 -111694364 - MIR SINE MIR 0 262 10 2088 136 3 0 chr9 30577236 30577546 -111693898 + AluSq SINE Alu 1 311 -2 25 65 0 0 chr9 30577989 30578035 -111693409 + AT_rich Low_complexity Low_complexity 1 46 0 21 89 0 0 chr9 30579271 30579327 -111692117 + AT_rich Low_complexity Low_complexity 1 56 0 833 234 10 30 chr9 30579589 30579786 -111691658 - MIR SINE MIR -55 207 15 258 32 0 0 chr9 30580092 30580123 -111691321 + (CAAA)n Simple_repeat Simple_repeat 4 34 0 484 274 62 111 chr9 30580358 30580727 -111690717 + L1ME LINE L1 5460 5671 -450 1355 169 20 102 chr9 30583668 30583815 -111687629 - L1MC1 LINE L1 0 6613 6456 1499 214 0 0 chr9 30583815 30584118 -111687326 + AluJo SINE Alu 13 315 0 1355 169 20 102 chr9 30584118 30584323 -111687121 - L1MC1 LINE L1 -157 6456 6289 4276 71 34 8 chr9 30584323 30585324 -111686120 + MER11A LTR ERVK 1 1266 0 8294 213 63 23 chr9 30585324 30590011 -111681433 - L1MC1 LINE L1 -320 6293 812 1402 177 8 8 chr9 30590013 30590261 -111681183 - AluJb SINE Alu -64 248 1 3923 192 30 26 chr9 30590262 30591059 -111680385 - L1MC1 LINE L1 -5599 827 28 197 295 77 0 chr9 30592162 30592240 -111679204 + L2 LINE L2 3229 3312 -1 445 49 62 0 chr9 30593806 30593887 -111677557 + (TCTA)n Simple_repeat Simple_repeat 1 86 0 27 49 0 0 chr9 30594767 30594808 -111676636 + AT_rich Low_complexity Low_complexity 1 41 0 1884 211 11 0 chr9 30595087 30595448 -111675996 + MLT1A1 LTR MaLR 1 365 0 218 350 17 43 chr9 30595657 30595774 -111675670 + L2 LINE L2 2956 3069 -244 424 332 79 5 chr9 30596297 30596499 -111674945 + MIR SINE MIR 30 246 -16 277 342 97 0 chr9 30596730 30596885 -111674559 + MIR SINE MIR 74 243 -19 642 305 70 9 chr9 30597501 30597714 -111673730 + MIR SINE MIR 10 235 -27 2088 115 10 0 chr9 30597920 30598208 -111673236 - AluSg SINE Alu -19 291 1 621 271 42 10 chr9 30598388 30598580 -111672864 + MLT1J1 LTR MaLR 1 198 -248 2020 118 0 3 chr9 30598920 30599207 -111672237 + AluSq SINE Alu 1 286 -27 321 232 0 0 chr9 30599213 30599282 -111672162 - L1MC4 LINE L1 -1339 6703 6635 514 246 57 23 chr9 30599553 30599728 -111671716 + MLT1J1 LTR MaLR 255 435 -11 290 340 207 24 chr9 30603972 30605032 -111666412 + L2 LINE L2 1285 2538 -776 6196 66 19 1 chr9 30606054 30606876 -111664568 + L1PA8 LINE L1 5335 6171 -1 371 299 121 0 chr9 30607988 30608145 -111663299 + MER5B DNA MER1_type 3 178 0 486 281 166 0 chr9 30608159 30608298 -111663146 - MER5A DNA MER1_type 0 189 28 279 204 20 0 chr9 30609182 30609231 -111662213 + MIR3 SINE MIR 114 163 -45 * 284 292 77 42 chr9 30609228 30609396 -111662048 - MIR SINE MIR 0 262 89 27 62 0 0 chr9 30610337 30610385 -111661059 + AT_rich Low_complexity Low_complexity 1 48 0 494 282 60 44 chr9 30611090 30611338 -111660106 + Tigger8 DNA MER2_type 60 311 -355 355 329 7 0 chr9 30611462 30611599 -111659845 + Tigger8 DNA MER2_type 390 527 -139 2268 93 0 10 chr9 30612329 30612630 -111658814 - AluY SINE Alu -13 298 1 1587 278 151 44 chr9 30614046 30615343 -111656101 + HAL1 LINE L1 446 1881 -626 3358 186 105 102 chr9 30615409 30616037 -111655407 + L1MD2 LINE L1 5074 5699 -660 2196 102 7 0 chr9 30616037 30616331 -111655113 - AluSp SINE Alu -17 296 1 3358 186 105 102 chr9 30616331 30616951 -111654493 + L1MD2 LINE L1 5699 6330 -29 278 354 38 19 chr9 30617097 30617306 -111654138 + L1MEd LINE L1 335 547 -5572 592 282 5 61 chr9 30618904 30619011 -111652433 - MIR SINE MIR -9 253 162 2207 179 94 39 chr9 30619011 30619531 -111651913 - MER44D DNA MER2_type -1 604 1 592 282 5 61 chr9 30619531 30619636 -111651808 - MIR SINE MIR -100 162 53 905 265 88 21 chr9 30619686 30620100 -111651344 - L1ME2 LINE L1 -10 6154 5714 23 0 0 0 chr9 30620349 30620372 -111651072 + AT_rich Low_complexity Low_complexity 1 23 0 211 341 174 12 chr9 30621379 30621546 -111649898 + MIR SINE MIR 8 201 -61 2103 95 7 3 chr9 30621551 30621836 -111649608 + AluSq SINE Alu 1 286 -27 336 64 0 0 chr9 30621836 30621883 -111649561 + (CATA)n Simple_repeat Simple_repeat 2 48 0 405 301 62 94 chr9 30622050 30622488 -111648956 + MLT1H LTR MaLR 104 527 -22 502 252 43 29 chr9 30622529 30622668 -111648776 - MIR SINE MIR -110 152 12 180 125 0 0 chr9 30622861 30622893 -111648551 + (CA)n Simple_repeat Simple_repeat 2 33 0 205 195 24 0 chr9 30623321 30623362 -111648082 + CT-rich Low_complexity Low_complexity 1 42 0 448 289 51 67 chr9 30623629 30624003 -111647441 + L1M4 LINE L1 3673 4040 -2106 593 260 71 10 chr9 30624709 30624905 -111646539 - L1M4 LINE L1 -1261 5845 5638 261 119 0 0 chr9 30624955 30624997 -111646447 + (TA)n Simple_repeat Simple_repeat 2 43 0 1122 251 42 40 chr9 30625038 30625488 -111645956 - L1MEc LINE L1 -3245 3861 3411 275 235 8 34 chr9 30625542 30625661 -111645783 - L1MEc LINE L1 -4129 3158 3043 904 188 108 0 chr9 30625731 30625954 -111645490 - L1MA8 LINE L1 -22 6269 6023 * 3162 257 112 55 chr9 30625953 30627476 -111643968 - L1M4 LINE L1 -5418 1612 2 333 326 109 29 chr9 30627491 30627767 -111643677 - L1MEc LINE L1 -4304 2983 2686 1904 263 30 87 chr9 30627874 30628236 -111643208 - L1M4c LINE L1 -4438 2849 2468 2703 52 9 0 chr9 30628236 30628579 -111642865 - L1PA7 LINE L1 -5 6149 5804 1904 263 30 87 chr9 30628579 30629643 -111641801 - L1M4c LINE L1 -4819 2468 1339 243 0 0 0 chr9 30629655 30629682 -111641762 + (TG)n Simple_repeat Simple_repeat 2 28 0 2093 114 0 3 chr9 30629683 30629973 -111641471 - AluSc SINE Alu -14 295 7 535 246 64 37 chr9 30630442 30630629 -111640815 - L1M4c LINE L1 -6613 395 204 418 333 41 7 chr9 30630736 30630883 -111640561 - MIR SINE MIR -106 156 5 182 316 0 0 chr9 30630908 30630946 -111640498 + L3b LINE CR1 1522 1559 -24 22 0 0 0 chr9 30631208 30631230 -111640214 + AT_rich Low_complexity Low_complexity 1 22 0 420 321 10 72 chr9 30631593 30631786 -111639658 + MIR SINE MIR 57 237 -25 580 332 30 30 chr9 30631826 30632007 -111639437 + MIR SINE MIR 28 211 -51 3888 153 94 12 chr9 30632007 30632770 -111638674 + LTR1B LTR ERV1 1 826 0 580 332 30 30 chr9 30632770 30632823 -111638621 + MIR SINE MIR 210 262 0 25 75 0 0 chr9 30634642 30634695 -111636749 + AT_rich Low_complexity Low_complexity 1 53 0 215 308 46 0 chr9 30635094 30635159 -111636285 - MIR3 SINE MIR -22 186 119 408 261 76 57 chr9 30635701 30635858 -111635586 + MIR SINE MIR 73 232 -30 284 337 0 0 chr9 30635863 30635946 -111635498 + LTR40c LTR ERVL 4 86 -379 1602 162 6 79 chr9 30636032 30636360 -111635084 + AluJo SINE Alu 1 304 -8 448 238 36 81 chr9 30636461 30636709 -111634735 - L1M4 LINE L1 -1550 4596 4360 203 276 0 0 chr9 30636722 30636780 -111634664 + (TTTA)n Simple_repeat Simple_repeat 3 60 0 505 274 26 34 chr9 30636802 30637054 -111634390 + LTR40b LTR ERVL 187 451 -14 301 342 9 0 chr9 30637865 30637979 -111633465 + MIR SINE MIR 40 154 -108 297 261 183 59 chr9 30638793 30638946 -111632498 + MIR SINE MIR 79 250 -12 25 0 0 0 chr9 30639025 30639050 -111632394 + AT_rich Low_complexity Low_complexity 1 25 0 444 19 0 0 chr9 30639056 30639109 -111632335 + (CA)n Simple_repeat Simple_repeat 2 54 0 291 336 70 56 chr9 30639211 30639425 -111632019 - MIR SINE MIR -26 236 20 210 248 121 78 chr9 30639460 30639601 -111631843 - MER5A DNA MER1_type 0 189 43 * 237 323 85 62 chr9 30639504 30639634 -111631810 + MER5A DNA MER1_type 54 186 -3 2140 115 0 3 chr9 30639694 30639989 -111631455 - AluY SINE Alu -17 294 1 22 35 0 0 chr9 30640056 30640085 -111631359 + AT_rich Low_complexity Low_complexity 1 29 0 466 260 61 18 chr9 30640341 30640506 -111630938 + MIR SINE MIR 16 191 -64 2456 140 10 22 chr9 30641200 30641607 -111629837 + THE1C-int LTR MaLR 1179 1580 0 1579 171 26 60 chr9 30641607 30641959 -111629485 + THE1C LTR MaLR 1 340 -35 200 268 134 31 chr9 30642486 30642583 -111628861 + MIR SINE MIR 36 142 -120 2418 78 0 0 chr9 30644461 30644769 -111626675 + AluY SINE Alu 1 308 -3 23 0 0 0 chr9 30645108 30645131 -111626313 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr9 30645261 30645291 -111626153 + AT_rich Low_complexity Low_complexity 1 30 0 2206 138 8 8 chr9 30645568 30645937 -111625507 - L1PB1 LINE L1 -1 6150 5782 294 206 0 0 chr9 30645937 30646000 -111625444 + (TATATG)n Simple_repeat Simple_repeat 2 64 0 291 105 0 0 chr9 30646000 30646038 -111625406 + (CA)n Simple_repeat Simple_repeat 2 39 0 26 30 0 0 chr9 30646077 30646110 -111625334 + GC_rich Low_complexity Low_complexity 1 33 0 1052 88 0 11 chr9 30646152 30646333 -111625111 + (C)n Simple_repeat Simple_repeat 1 179 0 206 216 14 0 chr9 30646471 30646545 -111624899 + C-rich Low_complexity Low_complexity 2 76 0 186 43 0 0 chr9 30646581 30646604 -111624840 + (CA)n Simple_repeat Simple_repeat 1 23 0 1208 81 0 0 chr9 30646613 30646774 -111624670 - L1PB1 LINE L1 -370 5781 5621 222 37 0 0 chr9 30647115 30647142 -111624302 + (CA)n Simple_repeat Simple_repeat 1 27 0 1954 125 15 15 chr9 30647389 30647718 -111623726 + MER67C LTR ERV1 382 710 0 245 180 0 33 chr9 30647945 30647968 -111623476 + GA-rich Low_complexity Low_complexity 3 25 -36 2052 253 28 8 chr9 30647968 30648498 -111622946 + MER87 LTR ERV1 1 541 0 245 180 0 33 chr9 30648498 30648535 -111622909 + GA-rich Low_complexity Low_complexity 25 61 0 10157 220 44 11 chr9 30648785 30651012 -111620432 + L1MA9 LINE L1 2587 4740 -1572 2088 171 47 33 chr9 30651012 30651463 -111619981 + MSTB2 LTR MaLR 1 457 0 10157 220 44 11 chr9 30651463 30651529 -111619915 + L1MA9 LINE L1 4740 4802 -1510 180 0 0 0 chr9 30651529 30651549 -111619895 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 10157 220 44 11 chr9 30651549 30652391 -111619053 + L1MA9 LINE L1 4802 5831 -481 615 117 0 0 chr9 30652396 30652490 -111618954 + (GA)n Simple_repeat Simple_repeat 1 94 0 1716 192 32 49 chr9 30652490 30652996 -111618448 + L1MA9 LINE L1 5814 6275 -37 2525 53 0 3 chr9 30653136 30653440 -111618004 + AluY SINE Alu 1 303 -8 1644 241 29 77 chr9 30653444 30654245 -111617199 - L1MC5 LINE L1 -435 7526 6628 369 0 0 0 chr9 30654246 30654287 -111617157 + (CA)n Simple_repeat Simple_repeat 2 42 0 513 0 0 0 chr9 30655095 30655152 -111616292 + (TA)n Simple_repeat Simple_repeat 2 58 0 360 291 101 39 chr9 30655168 30655426 -111616018 - HAL1b LINE L1 -966 382 109 495 0 0 0 chr9 30657085 30657140 -111614304 + (TG)n Simple_repeat Simple_repeat 1 55 0 445 366 51 9 chr9 30657148 30657395 -111614049 + MIR SINE MIR 6 260 -2 366 305 96 23 chr9 30657530 30657707 -111613737 + L2 LINE L2 3124 3313 0 2371 81 0 0 chr9 30658716 30659014 -111612430 + AluY SINE Alu 1 298 -13 195 42 0 0 chr9 30659109 30659133 -111612311 + (ATG)n Simple_repeat Simple_repeat 2 25 0 378 0 0 0 chr9 30659674 30659716 -111611728 + (CA)n Simple_repeat Simple_repeat 2 43 0 220 246 0 18 chr9 30660077 30660134 -111611310 + (CATATA)n Simple_repeat Simple_repeat 2 57 0 342 358 18 0 chr9 30662245 30662354 -111609090 - L2 LINE L2 -8 3264 3154 1582 150 194 6 chr9 30662505 30662865 -111608579 + MSTA LTR MaLR 1 428 0 184 345 58 46 chr9 30665835 30665922 -111605522 + L3 LINE CR1 1016 1103 -474 387 0 0 0 chr9 30666463 30666506 -111604938 + (TG)n Simple_repeat Simple_repeat 2 44 0 420 307 22 39 chr9 30666667 30666846 -111604598 - MIR3 SINE MIR -5 203 28 200 327 50 50 chr9 30666846 30667005 -111604439 + L3 LINE CR1 1411 1569 -8 21 0 0 0 chr9 30667738 30667759 -111603685 + AT_rich Low_complexity Low_complexity 1 21 0 330 266 0 13 chr9 30667984 30668063 -111603381 - L2 LINE L2 -1 3271 3194 1665 166 43 15 chr9 30668412 30668738 -111602706 - MER7A DNA MER2_type 0 346 14 984 246 87 16 chr9 30668836 30669157 -111602287 + MER2 DNA MER2_type 1 344 0 287 376 8 8 chr9 30669241 30669366 -111602078 - L2 LINE L2 -213 3059 2935 1510 217 33 28 chr9 30669371 30669731 -111601713 - MLT1A1 LTR MaLR 0 365 4 21 36 0 0 chr9 30669739 30669767 -111601677 + AT_rich Low_complexity Low_complexity 1 28 0 476 327 44 24 chr9 30669983 30670234 -111601210 + MIR SINE MIR 7 262 0 2317 78 14 0 chr9 30670304 30670597 -111600847 + AluSc SINE Alu 1 297 -12 473 290 181 19 chr9 30670987 30671246 -111600198 + L2 LINE L2 2988 3288 -25 345 82 0 0 chr9 30671301 30671350 -111600094 + (CA)n Simple_repeat Simple_repeat 1 49 0 188 313 43 96 chr9 30671984 30672099 -111599345 + L2 LINE L2 3148 3256 -16 2198 130 8 31 chr9 30674140 30674524 -111596920 - THE1C LTR MaLR 0 375 1 21 0 0 0 chr9 30674655 30674676 -111596768 + AT_rich Low_complexity Low_complexity 1 21 0 2959 169 138 36 chr9 30675606 30675949 -111595495 + MER44D DNA MER2_type 1 308 -2279 2502 60 0 19 chr9 30675949 30676266 -111595178 - AluY SINE Alu 0 311 1 2959 169 138 36 chr9 30676266 30676560 -111594884 + MER44D DNA MER2_type 308 703 -2 27 0 0 0 chr9 30676717 30676744 -111594700 + AT_rich Low_complexity Low_complexity 1 27 0 230 161 0 18 chr9 30677660 30677716 -111593728 + (TA)n Simple_repeat Simple_repeat 1 55 0 428 278 192 0 chr9 30679368 30679519 -111591925 + MER5A DNA MER1_type 10 189 0 2261 58 0 4 chr9 30679658 30679963 -111591481 + AluSc SINE Alu 3 306 0 2001 127 0 13 chr9 30680450 30680766 -111590678 - AluSx SINE Alu 0 312 1 286 250 135 19 chr9 30680801 30680905 -111590539 + L2 LINE L2 3183 3298 -15 285 185 25 12 chr9 30681175 30681256 -111590188 + (TA)n Simple_repeat Simple_repeat 1 82 0 315 0 0 0 chr9 30681616 30681651 -111589793 + (CA)n Simple_repeat Simple_repeat 2 36 0 180 152 0 0 chr9 30682562 30682595 -111588849 + (TG)n Simple_repeat Simple_repeat 2 34 0 208 352 105 0 chr9 30682801 30682906 -111588538 - L2 LINE L2 -2 3311 3196 388 129 0 24 chr9 30682907 30682992 -111588452 + (TA)n Simple_repeat Simple_repeat 2 84 0 339 25 0 0 chr9 30682992 30683032 -111588412 + (GA)n Simple_repeat Simple_repeat 2 41 0 5300 308 110 12 chr9 30683157 30685297 -111586147 - L2 LINE L2 -834 2480 131 273 333 78 16 chr9 30685303 30685432 -111586012 + MIR SINE MIR 125 261 -1 24 67 0 0 chr9 30687498 30687543 -111583901 + AT_rich Low_complexity Low_complexity 1 45 0 22 80 0 0 chr9 30687682 30687732 -111583712 + AT_rich Low_complexity Low_complexity 1 50 0 219 394 96 0 chr9 30687777 30687871 -111583573 + L2 LINE L2 3191 3293 -20 308 258 156 27 chr9 30688835 30688935 -111582509 - MER112 DNA MER1_type -50 210 124 240 59 0 0 chr9 30688935 30688969 -111582475 + (TG)n Simple_repeat Simple_repeat 2 35 0 308 258 156 27 chr9 30688969 30689054 -111582390 - MER112 DNA MER1_type -136 124 1 37 23 0 0 chr9 30689113 30689157 -111582287 + AT_rich Low_complexity Low_complexity 1 44 0 347 0 23 0 chr9 30690166 30690209 -111581235 + (CAAAAA)n Simple_repeat Simple_repeat 1 44 0 2216 85 3 3 chr9 30692628 30692956 -111578488 - AluY SINE Alu 0 328 1 205 392 200 0 chr9 30693422 30693552 -111577892 + L2 LINE L2 3116 3271 -1 24 67 0 0 chr9 30694396 30694441 -111577003 + AT_rich Low_complexity Low_complexity 1 45 0 271 304 70 17 chr9 30694972 30695087 -111576357 + L2 LINE L2 2585 2705 -609 2362 83 0 7 chr9 30695096 30695397 -111576047 + AluSg SINE Alu 1 299 -11 221 389 38 8 chr9 30695459 30695590 -111575854 + L2 LINE L2 2851 2985 -287 315 296 75 31 chr9 30696073 30696232 -111575212 + MER117 DNA MER1_type 1 166 -31 1259 323 143 42 chr9 30696371 30697607 -111573837 + L2 LINE L2 1947 3312 -1 28 0 0 0 chr9 30697843 30697871 -111573573 + AT_rich Low_complexity Low_complexity 1 28 0 31 68 0 0 chr9 30697963 30698022 -111573422 + AT_rich Low_complexity Low_complexity 1 59 0 1534 160 90 16 chr9 30698837 30699149 -111572295 - MER44D DNA MER2_type -4 605 1 488 319 160 31 chr9 30699177 30699622 -111571822 - L2 LINE L2 -1 3312 2811 2162 120 0 0 chr9 30699789 30700088 -111571356 + AluSc SINE Alu 1 299 -10 279 329 66 15 chr9 30700092 30700229 -111571215 + L2 LINE L2 2562 2705 -609 1414 69 0 11 chr9 30700238 30700413 -111571031 + AluSg SINE Alu 1 173 -137 222 333 40 33 chr9 30700936 30701086 -111570358 - L2 LINE L2 -1640 1674 1524 1852 189 43 36 chr9 30701510 30701901 -111569543 - MSTD LTR MaLR 0 396 3 532 288 52 86 chr9 30702904 30703324 -111568120 - MLT1K LTR MaLR 0 588 183 2125 137 0 3 chr9 30704012 30704318 -111567126 - AluSq SINE Alu -8 305 1 3274 94 0 5 chr9 30708036 30708482 -111562962 + MLT2A1 LTR ERVL 1 444 0 359 304 151 13 chr9 30708619 30708802 -111562642 - MIR SINE MIR -49 213 7 1096 237 118 28 chr9 30709023 30709385 -111562059 + MLT1G1 LTR MaLR 15 366 -201 234 399 0 8 chr9 30709645 30709778 -111561666 + MLT1G1 LTR MaLR 451 582 -13 456 308 77 11 chr9 30710154 30710336 -111561108 + MER117 DNA MER1_type 4 197 0 200 299 131 0 chr9 30710500 30710607 -111560837 + MIR SINE MIR 72 192 -70 272 271 369 9 chr9 30712801 30713015 -111558429 - L3 LINE CR1 -8 1569 1279 668 240 28 69 chr9 30713018 30713235 -111558209 + MIR SINE MIR 49 256 -6 325 301 89 60 chr9 30713250 30713532 -111557912 + L3 LINE CR1 691 980 -597 23 33 0 0 chr9 30713729 30713759 -111557685 + AT_rich Low_complexity Low_complexity 1 30 0 446 171 191 7 chr9 30713858 30714010 -111557434 - Charlie4 DNA MER1_type -7 1954 1775 * 643 201 93 26 chr9 30714009 30714203 -111557241 - Charlie4 DNA MER1_type -1669 292 86 1998 205 84 50 chr9 30714518 30715152 -111556292 + LTR1B LTR ERV1 1 655 -171 2122 123 3 7 chr9 30715238 30715540 -111555904 + AluSq SINE Alu 1 301 -12 274 378 30 20 chr9 30716024 30716225 -111555219 - L2 LINE L2 -513 2801 2599 189 195 0 0 chr9 30716390 30716431 -111555013 + (CA)n Simple_repeat Simple_repeat 2 42 0 221 341 24 0 chr9 30716431 30716516 -111554928 + (CATG)n Simple_repeat Simple_repeat 4 90 0 228 122 0 0 chr9 30716517 30716558 -111554886 + (CA)n Simple_repeat Simple_repeat 1 41 0 21 0 0 0 chr9 30717521 30717542 -111553902 + AT_rich Low_complexity Low_complexity 1 21 0 338 308 29 19 chr9 30720518 30720622 -111550822 + L2 LINE L2 3168 3272 0 2237 101 0 3 chr9 30721961 30722248 -111549196 - AluSp SINE Alu -27 286 1 38 51 0 0 chr9 30722253 30722312 -111549132 + AT_rich Low_complexity Low_complexity 1 59 0 2254 92 0 3 chr9 30722996 30723279 -111548165 + AluSp SINE Alu 1 282 -31 267 31 0 0 chr9 30723282 30723314 -111548130 + (TA)n Simple_repeat Simple_repeat 2 33 0 1569 210 78 24 chr9 30723703 30724165 -111547279 + Charlie1b DNA MER1_type 37 523 0 360 231 10 39 chr9 30724170 30724274 -111547170 + L2 LINE L2 2390 2490 -824 7602 183 98 59 chr9 30724307 30725995 -111545449 - MER52A LTR ERV1 -2 1753 1 204 388 50 0 chr9 30726009 30726169 -111545275 + L2 LINE L2 2507 2674 -640 361 332 74 21 chr9 30726463 30726662 -111544782 + L2 LINE L2 2809 3014 -299 201 231 0 19 chr9 30726997 30727049 -111544395 + MIR SINE MIR 110 160 -102 747 283 33 50 chr9 30727060 30727360 -111544084 - L2 LINE L2 0 3313 3019 443 174 23 0 chr9 30727886 30727972 -111543472 - MIR SINE MIR -73 189 102 343 171 40 0 chr9 30728846 30728922 -111542522 + MER116 DNA Mariner 2 80 0 209 318 209 18 chr9 30729488 30729598 -111541846 + MIR SINE MIR 34 164 -98 2175 127 0 16 chr9 30729713 30730029 -111541415 + AluSx SINE Alu 2 312 0 213 94 0 0 chr9 30731638 30731670 -111539774 + (CA)n Simple_repeat Simple_repeat 2 33 0 602 314 52 44 chr9 30732402 30732746 -111538698 - MLT1I LTR MaLR 0 409 63 21 0 0 0 chr9 30733245 30733266 -111538178 + AT_rich Low_complexity Low_complexity 1 21 0 313 271 47 0 chr9 30733381 30733466 -111537978 + L1MC4 LINE L1 6614 6702 -1340 378 131 0 36 chr9 30733467 30733551 -111537893 + (TA)n Simple_repeat Simple_repeat 2 82 0 271 239 0 22 chr9 30733557 30733649 -111537795 + L1MC4 LINE L1 6614 6703 -1339 657 117 4 59 chr9 30733669 30733951 -111537493 + (TA)n Simple_repeat Simple_repeat 1 266 0 312 283 0 22 chr9 30733955 30734047 -111537397 + L1MC4 LINE L1 6614 6703 -1339 459 173 0 64 chr9 30734480 30734590 -111536854 + MLT1A1 LTR MaLR 3 105 -260 284 342 61 61 chr9 30735368 30735663 -111535781 + L2 LINE L2 2977 3271 -1 272 342 25 66 chr9 30736123 30736366 -111535078 + MLT1I LTR MaLR 101 333 -76 1554 216 107 50 chr9 30736757 30737234 -111534210 - MLT1D LTR MaLR 0 505 2 21 36 0 0 chr9 30737309 30737337 -111534107 + AT_rich Low_complexity Low_complexity 1 28 0 193 222 56 56 chr9 30738817 30738889 -111532555 + L3 LINE CR1 1486 1557 -20 1893 159 37 11 chr9 30739161 30739513 -111531931 - THE1C LTR MaLR -1 374 14 242 319 11 11 chr9 30739543 30739637 -111531807 + MIR SINE MIR 113 206 -56 817 211 26 21 chr9 30739659 30739849 -111531595 + MER20 DNA MER1_type 29 219 0 219 69 0 0 chr9 30741283 30741312 -111530132 + (CA)n Simple_repeat Simple_repeat 2 30 0 528 356 170 34 chr9 30741902 30742924 -111528520 - L2 LINE L2 -16 3256 2107 607 312 78 9 chr9 30742961 30743179 -111528265 - MIR SINE MIR -18 244 12 916 180 44 81 chr9 30743269 30743541 -111527903 + MER33 DNA MER1_type 1 262 -62 213 294 200 0 chr9 30744641 30744726 -111526718 + MIR SINE MIR 115 216 -46 26 30 0 0 chr9 30745369 30745402 -111526042 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr9 30745535 30745556 -111525888 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr9 30745685 30745719 -111525725 + AT_rich Low_complexity Low_complexity 1 34 0 1511 234 19 22 chr9 30745828 30746195 -111525249 + MLT2D LTR ERVL 1 366 -48 293 47 23 0 chr9 30746197 30746240 -111525204 + (TAGA)n Simple_repeat Simple_repeat 4 47 0 210 169 13 26 chr9 30746256 30746333 -111525111 + (TA)n Simple_repeat Simple_repeat 1 76 0 370 99 87 5 chr9 30746577 30747002 -111524442 + (TA)n Simple_repeat Simple_repeat 1 459 0 321 26 0 0 chr9 30747210 30747248 -111524196 + (TAAAA)n Simple_repeat Simple_repeat 2 39 0 759 176 8 0 chr9 30747248 30747379 -111524065 + FRAM SINE Alu 1 129 -47 21 0 0 0 chr9 30748852 30748873 -111522571 + AT_rich Low_complexity Low_complexity 1 21 0 425 116 0 0 chr9 30749811 30749880 -111521564 + L1PA13 LINE L1 6088 6156 -7 30 0 0 0 chr9 30750398 30750428 -111521016 + AT_rich Low_complexity Low_complexity 1 30 0 349 341 103 66 chr9 30750451 30750771 -111520673 - L2 LINE L2 -12 3260 2929 2126 115 0 6 chr9 30751133 30751446 -111519998 + AluY SINE Alu 1 311 0 227 305 102 53 chr9 30753261 30753416 -111518028 - MIR SINE MIR -57 151 45 229 259 0 0 chr9 30754021 30754079 -111517365 + (TG)n Simple_repeat Simple_repeat 2 59 0 269 336 65 100 chr9 30754766 30755215 -111516229 - L2 LINE L2 -2 3270 2838 237 349 34 81 chr9 30756009 30756244 -111515200 + L2 LINE L2 2963 3186 -86 524 343 116 15 chr9 30756354 30756835 -111514609 + L1MC4a LINE L1 5296 5825 -1983 31 26 0 0 chr9 30756841 30756879 -111514565 + AT_rich Low_complexity Low_complexity 1 38 0 26 82 0 0 chr9 30757153 30757214 -111514230 + AT_rich Low_complexity Low_complexity 1 61 0 242 298 158 0 chr9 30757352 30757489 -111513955 + MIR SINE MIR 15 173 -89 1960 120 22 35 chr9 30758726 30759042 -111512402 + AluSx SINE Alu 1 312 0 25 0 0 0 chr9 30759503 30759528 -111511916 + AT_rich Low_complexity Low_complexity 1 25 0 413 278 26 147 chr9 30760032 30760305 -111511139 - MIR SINE MIR -3 259 20 309 272 64 32 chr9 30760792 30760917 -111510527 - L1MC4 LINE L1 0 8042 7914 918 215 129 68 chr9 30760970 30761411 -111510033 - L1MC4 LINE L1 -132 7910 7443 209 57 29 0 chr9 30761865 30761900 -111509544 + (TTA)n Simple_repeat Simple_repeat 3 38 0 8370 31 0 0 chr9 30761900 30763654 -111507790 - L1PA3 LINE L1 -18 6137 4384 9922 38 2 0 chr9 30763654 30764878 -111506566 + L1PA3 LINE L1 3172 4397 -1749 332 331 73 22 chr9 30765497 30765675 -111505769 + MIR3 SINE MIR 17 203 -5 2136 106 0 20 chr9 30765740 30765837 -111505607 - AluSx SINE Alu -11 301 204 3398 197 23 63 chr9 30765837 30766847 -111504597 + LTR5 LTR ERVK 1 969 0 2136 106 0 20 chr9 30766847 30767051 -111504393 - AluSx SINE Alu -108 204 6 1883 105 0 14 chr9 30767267 30767543 -111503901 - L1PA11 LINE L1 -4 6170 5899 306 266 0 38 chr9 30767942 30768021 -111503423 + MIR SINE MIR 5 80 -182 521 341 49 46 chr9 30768509 30768814 -111502630 + L2 LINE L2 2589 2894 -420 702 120 0 0 chr9 30768816 30768945 -111502499 - AluSg/x SINE Alu 0 311 183 263 328 52 95 chr9 30769011 30769237 -111502207 + L2 LINE L2 2926 3160 -153 407 92 15 0 chr9 30769237 30769302 -111502142 + (TA)n Simple_repeat Simple_repeat 2 67 0 2267 112 0 0 chr9 30769306 30769610 -111501834 - AluSx SINE Alu -8 304 1 263 328 52 95 chr9 30769610 30769778 -111501666 + L2 LINE L2 3163 3308 -5 361 188 15 23 chr9 30770300 30770433 -111501011 + (TA)n Simple_repeat Simple_repeat 2 133 0 306 221 11 42 chr9 30770471 30770566 -111500878 - L1MC4 LINE L1 -1339 6703 6612 417 11 100 0 chr9 30770566 30770656 -111500788 + (TA)n Simple_repeat Simple_repeat 1 99 0 309 281 0 35 chr9 30771009 30771154 -111500290 + L1MC4 LINE L1 6614 6703 -1339 230 313 50 12 chr9 30774754 30774834 -111496610 - L2 LINE L2 0 3313 3231 30 0 0 0 chr9 30775070 30775100 -111496344 + AT_rich Low_complexity Low_complexity 1 30 0 306 0 0 0 chr9 30775828 30775862 -111495582 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 370 194 14 0 chr9 30776905 30776977 -111494467 + MIR SINE MIR 101 173 -89 300 262 104 53 chr9 30779122 30779376 -111492068 - L1ME LINE L1 -542 5579 5312 4335 39 0 0 chr9 30779383 30779902 -111491542 - L1PA3 LINE L1 0 6155 5637 22 0 0 0 chr9 30780291 30780313 -111491131 + AT_rich Low_complexity Low_complexity 1 22 0 1351 141 48 0 chr9 30780353 30780623 -111490821 - L1MA8 LINE L1 -1 6290 6008 416 370 110 28 chr9 30780769 30780874 -111490570 - L2 LINE L2 -678 2636 2541 2110 176 13 33 chr9 30780874 30781328 -111490116 + MER65A LTR ERV1 1 445 0 416 370 110 28 chr9 30781328 30781824 -111489620 - L2 LINE L2 -773 2541 1986 652 277 114 0 chr9 30783198 30783418 -111488026 + MIR SINE MIR 15 259 -3 307 350 84 31 chr9 30783497 30783723 -111487721 + L3 LINE CR1 1329 1566 -11 1177 153 18 9 chr9 30784351 30784573 -111486871 + L1PA13 LINE L1 5939 6162 -1 5997 239 102 32 chr9 30784615 30787539 -111483905 + L1MA8 LINE L1 1 3147 -3959 603 233 8 0 chr9 30787541 30787661 -111483783 + FLAM_C SINE Alu 1 121 -12 12058 200 41 23 chr9 30787681 30789075 -111482369 + L1MA8 LINE L1 3124 4492 -2759 347 60 20 0 chr9 30789075 30789125 -111482319 + (TTCA)n Simple_repeat Simple_repeat 4 54 0 1532 193 11 21 chr9 30789126 30789411 -111482033 - AluJo SINE Alu -30 282 1 12058 200 41 23 chr9 30789411 30792068 -111479376 + L1MA8 LINE L1 4491 7246 -5 291 54 0 0 chr9 30793773 30793810 -111477634 + (CA)n Simple_repeat Simple_repeat 2 38 0 25 0 0 0 chr9 30795706 30795731 -111475713 + AT_rich Low_complexity Low_complexity 1 25 0 1971 141 152 11 chr9 30796082 30796457 -111474987 + MSTA LTR MaLR 1 428 0 225 293 123 28 chr9 30798539 30798645 -111472799 + MLT1I LTR MaLR 126 241 -168 1144 219 8 21 chr9 30800164 30800406 -111471038 - MER8 DNA MER2_type 0 239 1 2394 81 0 3 chr9 30800484 30800793 -111470651 + AluSc SINE Alu 2 309 0 853 206 22 0 chr9 30800939 30801119 -111470325 - MER5A DNA MER1_type -4 185 2 249 376 120 0 chr9 30801343 30801460 -111469984 - L2 LINE L2 -5 3267 3137 4194 146 79 34 chr9 30801584 30802450 -111468994 + MER4D LTR ERV1 1 664 0 21 82 0 0 chr9 30802830 30802879 -111468565 + AT_rich Low_complexity Low_complexity 1 49 0 1159 102 0 18 chr9 30803074 30803241 -111468203 - AluSq SINE Alu -5 308 145 425 292 88 21 chr9 30803373 30803565 -111467879 + L3 LINE CR1 657 861 -716 242 308 0 22 chr9 30803578 30803669 -111467775 + MLT1L LTR MaLR 1 89 -526 2146 112 29 11 chr9 30803698 30804047 -111467397 - THE1A LTR MaLR 0 355 1 272 311 37 22 chr9 30804113 30804248 -111467196 + MLT1J LTR MaLR 235 371 -140 238 240 0 40 chr9 30804415 30804515 -111466929 + A-rich Low_complexity Low_complexity 2 97 0 306 243 176 34 chr9 30805631 30805779 -111465665 - L1MC/D LINE L1 -2028 5780 5612 30 0 0 0 chr9 30805926 30805956 -111465488 + AT_rich Low_complexity Low_complexity 1 30 0 186 43 0 0 chr9 30806358 30806381 -111465063 + (CA)n Simple_repeat Simple_repeat 2 24 0 397 265 93 40 chr9 30806425 30806576 -111464868 + MIR SINE MIR 32 190 -72 870 311 65 29 chr9 30807335 30807824 -111463620 + LTR33 LTR ERVL 13 519 -2 180 111 0 0 chr9 30808255 30808282 -111463162 + (TGAA)n Simple_repeat Simple_repeat 2 28 0 1151 264 53 35 chr9 30808404 30808802 -111462642 + MLT1D LTR MaLR 1 405 -100 234 350 43 17 chr9 30809639 30809756 -111461688 + L2 LINE L2 2677 2796 -518 1831 165 7 7 chr9 30809850 30810153 -111461291 - AluSx SINE Alu -9 303 1 210 71 0 0 chr9 30810175 30810203 -111461241 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 1130 166 18 5 chr9 30810412 30810629 -111460815 - L1 LINE L1 -3677 2469 2250 964 139 39 0 chr9 30810629 30810801 -111460643 + L1MA7 LINE L1 6105 6291 0 1820 253 55 33 chr9 30810825 30811374 -111460070 + MER77 LTR ERV1 41 601 -4 2286 110 0 3 chr9 30811665 30811974 -111459470 + AluSg SINE Alu 1 308 -2 356 278 66 69 chr9 30812484 30812801 -111458643 + L2 LINE L2 2964 3279 -34 333 329 73 0 chr9 30813166 30813303 -111458141 + MIR SINE MIR 110 256 -6 955 291 16 4 chr9 30813334 30813585 -111457859 - MIR SINE MIR 0 262 9 224 358 204 11 chr9 30813603 30813779 -111457665 - MIR SINE MIR 0 262 53 616 131 10 0 chr9 30814056 30814155 -111457289 + Tigger2 DNA MER2_type 2 101 -2617 217 236 55 0 chr9 30815999 30816054 -111455390 + L2 LINE L2 3256 3313 0 2031 109 4 0 chr9 30817460 30817735 -111453709 + AluSg SINE Alu 1 276 -34 399 41 0 0 chr9 30817740 30817789 -111453655 + (TAAAA)n Simple_repeat Simple_repeat 2 50 0 231 266 48 81 chr9 30818087 30818211 -111453233 - MIR SINE MIR -4 258 139 190 378 65 44 chr9 30818274 30818529 -111452915 + L2 LINE L2 2395 2663 -651 1908 153 0 0 chr9 30818529 30818839 -111452605 - AluSx SINE Alu 0 310 1 190 378 65 44 chr9 30818839 30818966 -111452478 + L2 LINE L2 2663 2786 -528 2120 158 101 5 chr9 30819223 30819629 -111451815 + MER65A LTR ERV1 1 445 0 248 271 34 68 chr9 30822065 30822183 -111449261 - MIR SINE MIR -65 197 84 219 336 62 31 chr9 30822237 30822365 -111449079 + MIR SINE MIR 105 236 -26 1455 232 55 8 chr9 30822413 30822779 -111448665 - MLT1B LTR MaLR 0 390 8 1717 247 36 38 chr9 30822780 30823230 -111448214 - MLT1B-int LTR MaLR -8 1727 1279 1653 136 29 0 chr9 30823422 30823695 -111447749 - L1PA13 LINE L1 -1 6162 5882 952 223 38 17 chr9 30823773 30824069 -111447375 - MLT1B-int LTR MaLR -487 884 491 1505 163 30 95 chr9 30824089 30824457 -111446987 + MER7A DNA MER2_type 2 343 -3 406 384 56 30 chr9 30825147 30825415 -111446029 + L2 LINE L2 2998 3272 0 24 0 0 0 chr9 30825648 30825672 -111445772 + AT_rich Low_complexity Low_complexity 1 24 0 686 286 84 47 chr9 30825781 30826208 -111445236 + MLT1J1 LTR MaLR 4 446 0 276 170 0 0 chr9 30826663 30826716 -111444728 + GA-rich Low_complexity Low_complexity 4 56 0 383 212 50 10 chr9 30827544 30827643 -111443801 - Charlie2b DNA MER1_type -2114 668 566 471 301 29 34 chr9 30827686 30827892 -111443552 - Charlie2b DNA MER1_type -2502 280 76 312 269 77 69 chr9 30828083 30828213 -111443231 + MIR3 SINE MIR 5 135 -73 208 363 118 15 chr9 30828384 30828519 -111442925 + L2 LINE L2 3122 3270 -2 536 330 53 23 chr9 30829632 30829974 -111441470 - MLT1J LTR MaLR -46 465 114 201 74 0 0 chr9 30829987 30830014 -111441430 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 2260 103 0 0 chr9 30830036 30830338 -111441106 - AluSq SINE Alu -11 302 1 213 369 70 19 chr9 30830757 30830914 -111440530 + MIR SINE MIR 44 208 -54 328 351 23 8 chr9 30831253 30831384 -111440060 + MER5A DNA MER1_type 57 189 0 206 258 83 61 chr9 30831718 30831850 -111439594 - MIR SINE MIR -36 226 92 282 196 0 0 chr9 30832733 30832830 -111438614 + (TA)n Simple_repeat Simple_repeat 1 97 0 395 323 133 5 chr9 30832952 30833147 -111438297 + MIR SINE MIR 2 221 -41 191 209 33 11 chr9 30833316 30833407 -111438037 + (TA)n Simple_repeat Simple_repeat 1 93 0 13354 88 4 64 chr9 30834734 30836909 -111434535 + L1P LINE L1 2983 5026 -1120 730 263 153 26 chr9 30836909 30837512 -111433932 + LTR50 LTR ERVL 33 759 -36 1128 71 19 0 chr9 30837512 30837666 -111433778 + L1PA8A LINE L1 5325 5481 -650 180 368 13 26 chr9 30837902 30837978 -111433466 + MIR SINE MIR 12 86 -176 1099 287 87 35 chr9 30838033 30838525 -111432919 + MLT1H LTR MaLR 19 536 -13 190 268 31 62 chr9 30838550 30838647 -111432797 + MIR SINE MIR 159 252 -10 4543 225 50 39 chr9 30838935 30840366 -111431078 - Charlie1a DNA MER1_type -3 1452 7 282 289 18 24 chr9 30840742 30840908 -111430536 + GA-rich Low_complexity Low_complexity 2 166 0 627 173 91 0 chr9 30841455 30841565 -111429879 - FLAM_C SINE Alu -23 120 1 758 221 4 4 chr9 30842189 30842437 -111429007 + CT-rich Low_complexity Low_complexity 1 248 0 518 320 73 14 chr9 30843489 30843708 -111427736 - MIR SINE MIR -13 249 18 262 206 27 0 chr9 30844327 30844400 -111427044 + GA-rich Low_complexity Low_complexity 2 76 0 213 39 0 0 chr9 30845220 30845246 -111426198 + (TC)n Simple_repeat Simple_repeat 1 26 0 * 306 0 0 0 chr9 30845245 30845279 -111426165 + (CA)n Simple_repeat Simple_repeat 1 34 0 1265 237 3 14 chr9 30845868 30846155 -111425289 + AluJo SINE Alu 19 302 -10 195 162 0 0 chr9 30846479 30846516 -111424928 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 26 50 0 0 chr9 30846523 30846563 -111424881 + AT_rich Low_complexity Low_complexity 1 40 0 192 40 0 0 chr9 30847670 30847695 -111423749 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 634 294 0 33 chr9 30847815 30847995 -111423449 - MIR SINE MIR -21 241 68 268 187 147 13 chr9 30848886 30848961 -111422483 + MER3 DNA MER1_type 124 208 -1 3385 153 30 10 chr9 30848997 30849176 -111422268 + L1MA4A LINE L1 5611 5785 -518 315 0 0 0 chr9 30849176 30849211 -111422233 + (CA)n Simple_repeat Simple_repeat 2 36 0 3385 153 30 10 chr9 30849211 30849639 -111421805 + L1MA4A LINE L1 5785 6230 -73 273 196 0 0 chr9 30849718 30849774 -111421670 + (CATATA)n Simple_repeat Simple_repeat 4 59 0 194 274 34 164 chr9 30849900 30850046 -111421398 - L2 LINE L2 -188 3084 2958 396 327 142 9 chr9 30850131 30850357 -111421087 - L2 LINE L2 -498 2816 2561 30 89 0 0 chr9 30850603 30850682 -111420762 + AT_rich Low_complexity Low_complexity 1 79 0 272 315 48 55 chr9 30852136 30852282 -111419162 - MIR SINE MIR -60 202 58 255 308 0 26 chr9 30854176 30854254 -111417190 + L2 LINE L2 3234 3309 -4 1647 294 105 75 chr9 30854705 30855917 -111415527 - L2 LINE L2 -90 3223 1985 17559 164 50 21 chr9 30855955 30858253 -111413191 + L1M1 LINE L1 22 2252 -5313 2543 113 3 6 chr9 30858253 30858617 -111412827 - THE1B LTR MaLR -1 363 1 17559 164 50 21 chr9 30858617 30859005 -111412439 + L1M1 LINE L1 2252 2627 -4938 2242 122 37 8 chr9 30859005 30859359 -111412085 + THE1B LTR MaLR 1 364 0 17559 164 50 21 chr9 30859359 30859756 -111411688 + L1M1 LINE L1 2627 3011 -4554 2104 104 7 3 chr9 30859756 30860053 -111411391 + AluSg SINE Alu 1 298 -12 17559 164 50 21 chr9 30860053 30860259 -111411185 + L1M1 LINE L1 3011 3409 -4156 421 284 139 36 chr9 30860346 30860540 -111410904 - MIR SINE MIR 0 262 49 186 363 20 10 chr9 30860553 30860655 -111410789 + MIR SINE MIR 38 140 -68 28 29 0 0 chr9 30863101 30863136 -111408308 + AT_rich Low_complexity Low_complexity 1 35 0 318 360 94 24 chr9 30863551 30863848 -111407596 + L3b LINE CR1 1105 1422 -161 401 253 133 24 chr9 30864069 30864235 -111407209 + MIR SINE MIR 70 253 -9 186 71 0 0 chr9 30865135 30865163 -111406281 + (CA)n Simple_repeat Simple_repeat 2 29 0 1347 284 66 49 chr9 30865586 30866601 -111404843 + L2 LINE L2 2281 3308 -5 186 330 75 21 chr9 30867381 30867475 -111403969 - L2 LINE L2 -18 3295 3197 308 347 32 63 chr9 30867692 30867882 -111403562 + MER5A DNA MER1_type 3 186 -3 523 297 82 10 chr9 30868733 30868928 -111402516 + MER58C DNA MER1_type 4 212 -3 5331 178 17 20 chr9 30870360 30872243 -111399201 - L1MA7 LINE L1 -1 7709 5832 1331 143 98 0 chr9 30872245 30872489 -111398955 - Tigger5 DNA MER2_type 0 2323 2056 257 245 0 0 chr9 30872495 30872548 -111398896 - Tigger5 DNA MER2_type -2270 53 1 885 124 20 80 chr9 30872549 30872750 -111398694 - L1MA7 LINE L1 -1733 5832 5644 5369 225 22 8 chr9 30872775 30874221 -111397223 - L1MA7 LINE L1 -2596 4969 3505 1262 304 5 29 chr9 30874228 30874639 -111396805 - L1MA7 LINE L1 -5880 1616 1216 22 0 0 0 chr9 30874642 30874664 -111396780 + AT_rich Low_complexity Low_complexity 1 22 0 268 326 61 10 chr9 30875117 30875215 -111396229 + MIR SINE MIR 19 121 -87 22 0 0 0 chr9 30875293 30875315 -111396129 + AT_rich Low_complexity Low_complexity 1 22 0 338 279 254 15 chr9 30875329 30875530 -111395914 + MLT1J1 LTR MaLR 21 269 -177 32391 37 5 2 chr9 30875539 30881658 -111389786 + L1PA3 LINE L1 8 6154 -1 304 313 10 0 chr9 30881805 30881901 -111389543 + MLT1J2 LTR MaLR 354 450 0 750 165 0 0 chr9 30882773 30882894 -111388550 + FLAM_C SINE Alu 1 121 -12 200 306 32 16 chr9 30882954 30883016 -111388428 - L2 LINE L2 -3 3269 3207 2163 96 0 0 chr9 30883166 30883471 -111387973 + AluY SINE Alu 1 305 0 532 338 40 15 chr9 30883525 30883726 -111387718 - MIR SINE MIR -34 228 23 320 309 0 0 chr9 30883788 30883869 -111387575 + MER117 DNA MER1_type 100 180 -17 23 0 0 0 chr9 30886110 30886133 -111385311 + AT_rich Low_complexity Low_complexity 1 23 0 302 223 7 159 chr9 30886512 30886813 -111384631 - MER112 DNA MER1_type 0 256 2 264 122 0 0 chr9 30887250 30887291 -111384153 + MADE1 DNA Mariner 1 41 -39 1824 210 66 16 chr9 30888462 30888904 -111382540 + MLT1C LTR MaLR 3 466 -1 180 342 26 0 chr9 30890230 30890306 -111381138 - MIR SINE MIR -138 124 47 742 314 50 0 chr9 30890419 30890658 -111380786 + MIR SINE MIR 11 261 -1 212 143 0 0 chr9 30890927 30890962 -111380482 + (CA)n Simple_repeat Simple_repeat 2 36 0 914 190 103 115 chr9 30891012 30891225 -111380219 + MER2 DNA MER2_type 2 211 -134 1349 207 4 0 chr9 30891225 30891462 -111379982 + MER8 DNA MER2_type 2 239 0 914 190 103 115 chr9 30891462 30891596 -111379848 + MER2 DNA MER2_type 211 345 0 200 265 0 0 chr9 30892443 30892492 -111378952 + MIR3 SINE MIR 129 177 -31 500 318 41 0 chr9 30893373 30893543 -111377901 - L2 LINE L2 -944 2370 2194 7006 54 0 1 chr9 30893552 30894419 -111377025 - L1PA5 LINE L1 -1 6153 5288 11897 51 3 2 chr9 30894419 30895942 -111375502 + L1PA5 LINE L1 3753 5277 -869 478 331 25 0 chr9 30895942 30896099 -111375345 - L2 LINE L2 -1109 2205 2045 899 118 15 0 chr9 30896399 30896535 -111374909 + AluSg/x SINE Alu 171 308 -1 425 278 43 9 chr9 30896567 30896682 -111374762 + MIR SINE MIR 51 169 -93 21 0 0 0 chr9 30896803 30896824 -111374620 + AT_rich Low_complexity Low_complexity 1 21 0 407 329 110 9 chr9 30897602 30897700 -111373744 - MIR SINE MIR 0 262 175 2001 140 0 0 chr9 30897700 30897993 -111373451 + AluSx SINE Alu 1 293 -19 407 329 110 9 chr9 30897993 30898122 -111373322 - MIR SINE MIR -87 175 12 954 205 15 0 chr9 30900734 30900934 -111370510 + L1PB4 LINE L1 5953 6155 -1 1095 249 14 0 chr9 30901009 30901230 -111370214 - MER58A DNA MER1_type 0 224 1 619 311 65 20 chr9 30903129 30903480 -111367964 + L1PA12 LINE L1 1 367 -7214 259 77 0 96 chr9 30903581 30903633 -111367811 + L1PA16 LINE L1 5725 5771 -395 338 173 10 0 chr9 30903633 30903737 -111367707 + (TA)n Simple_repeat Simple_repeat 2 106 0 1656 168 6 52 chr9 30903737 30904101 -111367343 + L1PA16 LINE L1 5819 6165 -1 899 257 29 33 chr9 30904104 30904349 -111367095 - MIR SINE MIR -15 247 4 22 0 0 0 chr9 30904728 30904750 -111366694 + AT_rich Low_complexity Low_complexity 1 22 0 233 352 44 22 chr9 30905241 30905332 -111366112 + L2 LINE L2 3167 3259 -13 200 213 0 0 chr9 30906532 30906579 -111364865 + (TTAAA)n Simple_repeat Simple_repeat 3 49 0 2054 106 3 3 chr9 30907001 30907285 -111364159 + AluSg SINE Alu 1 284 -26 629 58 0 11 chr9 30907285 30907372 -111364072 + (GGAA)n Simple_repeat Simple_repeat 3 88 0 21 0 0 0 chr9 30907834 30907855 -111363589 + AT_rich Low_complexity Low_complexity 1 21 0 229 353 12 24 chr9 30908473 30908558 -111362886 + L2 LINE L2 3229 3312 -1 24 0 0 0 chr9 30909064 30909088 -111362356 + AT_rich Low_complexity Low_complexity 1 24 0 197 256 221 0 chr9 30909965 30910051 -111361393 + L2 LINE L2 3168 3272 0 2042 182 83 9 chr9 30911166 30911633 -111359811 - L1MA8 LINE L1 -2 6289 5788 1482 182 25 7 chr9 30911650 30911930 -111359514 - AluJo SINE Alu -4 308 24 21 36 0 0 chr9 30912555 30912583 -111358861 + AT_rich Low_complexity Low_complexity 1 28 0 1824 170 0 0 chr9 30912973 30913262 -111358182 - AluSx SINE Alu -23 289 1 282 369 74 23 chr9 30913377 30913553 -111357891 + MIR SINE MIR 49 233 -29 315 65 0 0 chr9 30914054 30914100 -111357344 + (GA)n Simple_repeat Simple_repeat 1 46 0 1012 251 49 0 chr9 30914136 30914359 -111357085 + MLT1H LTR MaLR 58 291 -258 345 367 130 0 chr9 30914809 30914978 -111356466 + MIR SINE MIR 1 191 -71 842 247 140 2 chr9 30915940 30916455 -111354989 - L1MD3 LINE L1 -11 7984 7145 1275 263 88 55 chr9 30916467 30916870 -111354574 + HsTC2a DNA Tc2 3 391 -1509 243 0 0 0 chr9 30916870 30916897 -111354547 + (TGG)n Simple_repeat Simple_repeat 3 29 0 261 0 0 0 chr9 30916897 30916926 -111354518 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 1966 127 0 0 chr9 30916931 30917207 -111354237 - AluSx SINE Alu -36 276 1 1275 263 88 55 chr9 30917207 30917453 -111353991 + HsTC2a DNA Tc2 394 681 -63 381 232 113 13 chr9 30918050 30918201 -111353243 - MER112 DNA MER1_type -88 172 7 864 222 26 10 chr9 30918330 30918524 -111352920 - MER3 DNA MER1_type -11 198 2 189 0 0 0 chr9 30919003 30919024 -111352420 + (TA)n Simple_repeat Simple_repeat 1 21 0 24 0 0 0 chr9 30919259 30919283 -111352161 + AT_rich Low_complexity Low_complexity 1 24 0 1770 150 0 7 chr9 30919447 30919721 -111351723 + AluSx SINE Alu 25 296 -16 212 245 0 0 chr9 30919744 30919793 -111351651 + (TGAA)n Simple_repeat Simple_repeat 1 49 0 212 235 78 0 chr9 30920013 30920064 -111351380 + MIR SINE MIR 47 101 -107 24 0 0 0 chr9 30920186 30920210 -111351234 + AT_rich Low_complexity Low_complexity 1 24 0 394 250 40 0 chr9 30920790 30920890 -111350554 - MIR3 SINE MIR -1 207 104 349 362 40 0 chr9 30923424 30923598 -111347846 + MIR SINE MIR 79 259 -3 993 236 129 10 chr9 30923665 30924067 -111347377 - L1ME LINE L1 -346 5816 5367 2262 220 49 49 chr9 30926870 30927912 -111343532 + L1MD1 LINE L1 4490 5575 -784 297 119 0 0 chr9 30927912 30927954 -111343490 + 5S rRNA rRNA 1 42 -79 2262 220 49 49 chr9 30927954 30928224 -111343220 + L1MD1 LINE L1 5575 5844 -515 663 163 0 8 chr9 30928325 30928448 -111342996 - L1MA8 LINE L1 -6 6285 6164 939 204 29 37 chr9 30928453 30928698 -111342746 + L1MD1 LINE L1 5831 6073 -169 282 185 74 0 chr9 30928703 30928784 -111342660 + L1MD2 LINE L1 6273 6359 0 255 291 46 86 chr9 30928940 30929091 -111342353 + MIR3 SINE MIR 18 162 -46 539 324 28 16 chr9 30929679 30929929 -111341515 + MIR SINE MIR 8 260 -2 768 278 49 4 chr9 30930163 30930408 -111341036 + L1MC4a LINE L1 5521 5776 -2032 1590 147 18 70 chr9 30930414 30930741 -111340703 - Tigger7 DNA MER2_type -1 2486 2177 1374 221 4 29 chr9 30930746 30931026 -111340418 - Tigger7 DNA MER2_type -2214 273 1 577 261 0 28 chr9 30931026 30931202 -111340242 + L1MC4a LINE L1 5780 5950 -1858 488 139 9 83 chr9 30931195 30931303 -111340141 + L1MA1 LINE L1 3877 3976 -2170 * 3308 212 18 0 chr9 30931309 30931968 -111339476 - L1P4 LINE L1 -1473 4673 4003 2421 188 18 0 chr9 30931977 30932483 -111338961 + L1P4 LINE L1 4680 5194 -952 1555 119 0 0 chr9 30932483 30932693 -111338751 + AluSx SINE Alu 1 210 -102 246 89 36 36 chr9 30932693 30932749 -111338695 + AluSx SINE Alu 247 302 0 1977 96 58 16 chr9 30932767 30933159 -111338285 + L1P4 LINE L1 5176 5576 -585 6847 142 21 27 chr9 30933160 30933505 -111337939 + L1MA1 LINE L1 3988 4334 -1968 1839 161 0 31 chr9 30933505 30933827 -111337617 + AluSx SINE Alu 1 312 0 6847 142 21 27 chr9 30933827 30935720 -111335724 + L1MA1 LINE L1 4334 6211 -91 2051 110 14 0 chr9 30935720 30936010 -111335434 - AluSx SINE Alu -18 294 1 6847 142 21 27 chr9 30936010 30936102 -111335342 + L1MA1 LINE L1 6211 6302 0 414 237 0 46 chr9 30936109 30936240 -111335204 + L1MC4a LINE L1 5925 6049 -1759 2352 156 100 8 chr9 30936692 30937161 -111334283 - L1MC1 LINE L1 -18 6315 5804 644 310 39 0 chr9 30937447 30937650 -111333794 + MIR SINE MIR 28 238 -24 398 184 13 0 chr9 30937692 30937768 -111333676 + MER116 DNA Mariner 4 80 0 489 86 0 0 chr9 30939029 30939106 -111332338 - L1PA4 LINE L1 -164 5992 5916 1340 25 0 0 chr9 30939106 30939258 -111332186 + L1PA4 LINE L1 5994 6152 -3 28 29 0 0 chr9 30939642 30939677 -111331767 + AT_rich Low_complexity Low_complexity 1 35 0 2151 108 0 0 chr9 30940626 30940921 -111330523 + AluSx SINE Alu 4 298 -14 1167 177 5 5 chr9 30941027 30941242 -111330202 - L1MB1 LINE L1 -302 5866 5652 5680 144 25 39 chr9 30941255 30942950 -111328494 - L1PB1 LINE L1 -1 6150 4482 1690 305 69 44 chr9 30943091 30944522 -111326922 + L1ME1 LINE L1 117 1583 -4813 1780 255 97 24 chr9 30944661 30945014 -111326430 + L1ME1 LINE L1 4382 4708 -1507 512 111 12 0 chr9 30945014 30945130 -111326314 + L1MA2 LINE L1 6220 6336 0 1780 255 97 24 chr9 30945130 30945614 -111325830 + L1ME1 LINE L1 4708 5281 -934 890 264 119 56 chr9 30945617 30946825 -111324619 + L1ME LINE L1 19 1301 -4779 410 195 47 22 chr9 30946811 30946932 -111324512 + L1ME1 LINE L1 5835 5965 -282 * 4307 187 32 17 chr9 30946940 30948467 -111322977 + L1MB3 LINE L1 4548 6094 -89 1779 153 20 7 chr9 30949093 30949387 -111322057 - AluSq SINE Alu -15 298 1 193 330 71 36 chr9 30949561 30949673 -111321771 + MIR SINE MIR 146 261 -1 2005 173 16 3 chr9 30950898 30951285 -111320159 - L1P LINE L1 -931 5215 4824 28 29 0 0 chr9 30953264 30953299 -111318145 + AT_rich Low_complexity Low_complexity 1 35 0 21 71 0 0 chr9 30953881 30953923 -111317521 + AT_rich Low_complexity Low_complexity 1 42 0 237 363 137 6 chr9 30954165 30954333 -111317111 + L3 LINE CR1 411 600 -977 699 339 140 36 chr9 30954345 30954989 -111316455 + L3 LINE CR1 707 1417 -160 207 344 44 11 chr9 30955433 30955523 -111315921 + L3 LINE CR1 1484 1576 -1 210 143 0 0 chr9 30955751 30955786 -111315658 + (CATATA)n Simple_repeat Simple_repeat 2 36 0 312 223 115 46 chr9 30955795 30955925 -111315519 - MIR SINE MIR -59 203 65 22 56 0 0 chr9 30956554 30956590 -111314854 + AT_rich Low_complexity Low_complexity 1 36 0 314 240 10 19 chr9 30956720 30956824 -111314620 + (TA)n Simple_repeat Simple_repeat 1 103 0 441 0 0 0 chr9 30956841 30956890 -111314554 + (TATTG)n Simple_repeat Simple_repeat 2 50 0 777 237 0 7 chr9 30956890 30957042 -111314402 - FRAM SINE Alu -25 151 1 399 41 0 0 chr9 30957169 30957218 -111314226 + (TA)n Simple_repeat Simple_repeat 1 49 0 471 293 79 56 chr9 30957705 30957920 -111313524 + MIR SINE MIR 13 232 -30 467 245 5 92 chr9 30958013 30958197 -111313247 + L1MB7 LINE L1 6007 6174 -10 659 185 15 7 chr9 30958442 30958577 -111312867 + MER3 DNA MER1_type 47 182 -27 264 213 0 0 chr9 30958610 30958671 -111312773 + CT-rich Low_complexity Low_complexity 1 61 0 1023 252 75 6 chr9 30959092 30959410 -111312034 + MER58B DNA MER1_type 1 340 -1 2129 71 61 30 chr9 30960365 30960662 -111310782 - AluY SINE Alu -5 306 1 1027 230 77 38 chr9 30961573 30961860 -111309584 - AluJo SINE Alu 0 302 5 243 119 45 0 chr9 30962265 30962332 -111309112 + (TA)n Simple_repeat Simple_repeat 1 70 0 190 308 39 39 chr9 30962341 30962419 -111309025 - MIR SINE MIR -147 115 38 372 244 47 0 chr9 30962433 30962542 -111308902 + MIR SINE MIR 64 178 -30 188 301 124 26 chr9 30964500 30964613 -111306831 - MER5A DNA MER1_type -1 188 65 * 314 180 11 56 chr9 30964612 30964701 -111306743 - MIR SINE MIR -49 213 129 311 253 112 47 chr9 30965555 30965725 -111305719 - MIR SINE MIR -1 261 81 6954 50 8 8 chr9 30965740 30966662 -111304782 - L1PA5 LINE L1 -2604 3542 2618 14666 44 2 1 chr9 30966662 30969280 -111302164 + L1PA5 LINE L1 3539 6154 0 6954 50 8 8 chr9 30969280 30969297 -111302147 - L1P LINE L1 -3527 2619 2603 236 262 24 71 chr9 30970518 30970602 -111300842 + L2 LINE L2 3233 3312 -1 279 54 0 0 chr9 30970968 30971005 -111300439 + (A)n Simple_repeat Simple_repeat 1 37 0 241 374 75 14 chr9 30971067 30971214 -111300230 - MIR SINE MIR 0 262 107 223 244 0 115 chr9 30971459 30971537 -111299907 - MIR SINE MIR -101 161 93 260 325 70 9 chr9 30972117 30972231 -111299213 + MIR3 SINE MIR 38 158 -50 1950 105 60 3 chr9 30972578 30972863 -111298581 - AluSx SINE Alu -11 301 1 368 316 124 10 chr9 30972885 30973078 -111298366 + MIR SINE MIR 45 259 -3 267 347 21 35 chr9 30973117 30973261 -111298183 - MIR SINE MIR -120 142 1 601 278 106 20 chr9 30973474 30973672 -111297772 + MIR SINE MIR 35 249 -13 360 238 119 7 chr9 30973713 30973856 -111297588 + MIR SINE MIR 104 262 0 27 100 0 0 chr9 30974875 30974965 -111296479 + AT_rich Low_complexity Low_complexity 1 90 0 407 252 65 0 chr9 30975549 30975656 -111295788 + L2 LINE L2 3196 3309 -4 24 32 0 0 chr9 30975740 30975771 -111295673 + AT_rich Low_complexity Low_complexity 1 31 0 256 328 85 53 chr9 30976002 30976249 -111295195 + L2 LINE L2 3018 3272 0 21 36 0 0 chr9 30976443 30976471 -111294973 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr9 30977019 30977041 -111294403 + AT_rich Low_complexity Low_complexity 1 22 0 617 313 48 36 chr9 30977736 30977985 -111293459 - MIR SINE MIR 0 262 11 277 80 20 20 chr9 30978693 30978743 -111292701 + (TA)n Simple_repeat Simple_repeat 2 51 0 309 68 0 0 chr9 30978744 30978788 -111292656 + (GA)n Simple_repeat Simple_repeat 1 44 0 30 83 0 0 chr9 30979073 30979145 -111292299 + AT_rich Low_complexity Low_complexity 1 72 0 25 83 0 0 chr9 30979179 30979239 -111292205 + AT_rich Low_complexity Low_complexity 1 60 0 249 317 32 0 chr9 30980096 30980219 -111291225 - MIR SINE MIR -6 202 75 1279 219 25 7 chr9 30980232 30980558 -111290886 + MER33 DNA MER1_type 1 324 0 207 0 0 0 chr9 30981115 30981138 -111290306 + (TAA)n Simple_repeat Simple_repeat 2 24 0 2112 138 0 0 chr9 30981960 30982272 -111289172 - AluSx SINE Alu 0 312 1 21 36 0 0 chr9 30982597 30982625 -111288819 + AT_rich Low_complexity Low_complexity 1 28 0 434 320 83 45 chr9 30984004 30984135 -111287309 - L2 LINE L2 -143 3129 3004 336 102 0 0 chr9 30984135 30984184 -111287260 + (CA)n Simple_repeat Simple_repeat 2 50 0 434 320 83 45 chr9 30984184 30984549 -111286895 - L2 LINE L2 -268 3004 2623 5867 153 8 39 chr9 30984550 30986001 -111285443 + L1MA2 LINE L1 4621 6013 -291 1931 138 10 3 chr9 30986001 30986292 -111285152 + AluSx SINE Alu 1 293 -19 5867 153 8 39 chr9 30986292 30986576 -111284868 + L1MA2 LINE L1 6013 6304 0 200 338 26 0 chr9 30986606 30986683 -111284761 - L2 LINE L2 -685 2629 2551 2165 99 13 89 chr9 30987176 30987568 -111283876 - L1MA2 LINE L1 -259 6046 5685 2318 81 0 0 chr9 30987771 30988067 -111283377 - AluY SINE Alu -15 296 1 33 56 0 0 chr9 30989212 30989266 -111282178 + AT_rich Low_complexity Low_complexity 1 54 0 580 277 110 15 chr9 30989535 30989754 -111281690 + MIR SINE MIR 17 254 -8 1907 120 141 46 chr9 30989866 30990257 -111281187 + MSTA LTR MaLR 1 428 0 235 394 81 6 chr9 30990591 30990751 -111280693 - MIR3 SINE MIR -7 201 30 965 239 152 115 chr9 30991221 30991812 -111279632 + MLT1E1 LTR MaLR 42 654 0 199 261 108 0 chr9 30992017 30992082 -111279362 - MIR SINE MIR -70 192 121 180 346 48 19 chr9 30992200 30992304 -111279140 + L2 LINE L2 3207 3313 0 333 329 67 7 chr9 30992435 30992584 -111278860 - MIR SINE MIR -74 188 31 2368 45 0 7 chr9 30996011 30996320 -111275124 - AluY SINE Alu 0 307 1 2241 83 3 0 chr9 30996374 30996675 -111274769 - AluY SINE Alu -9 302 1 230 160 20 0 chr9 30997162 30997212 -111274232 + (TA)n Simple_repeat Simple_repeat 2 52 0 253 200 0 14 chr9 30997524 30997594 -111273850 + L1MCa LINE L1 1996 2064 -4362 209 145 16 65 chr9 30997706 30997768 -111273676 + (TATATG)n Simple_repeat Simple_repeat 4 62 0 773 232 28 6 chr9 30997933 30998114 -111273330 + MER5A DNA MER1_type 5 189 0 454 326 118 0 chr9 30998513 30998700 -111272744 - MIR SINE MIR -11 251 43 6282 153 27 4 chr9 30998781 30999863 -111271581 + HSMAR2 DNA Mariner 9 1115 -187 360 0 0 0 chr9 31000067 31000107 -111271337 + (TTA)n Simple_repeat Simple_repeat 3 42 0 3280 40 2 2 chr9 31000107 31000507 -111270937 - L1PA4 LINE L1 -18 6137 5738 1088 163 5 0 chr9 31000519 31000703 -111270741 + HSMAR2 DNA Mariner 1115 1299 -3 21 57 0 0 chr9 31000955 31000990 -111270454 + AT_rich Low_complexity Low_complexity 1 35 0 257 338 165 0 chr9 31002674 31002807 -111268637 + MIR SINE MIR 87 241 -21 1084 306 67 16 chr9 31002809 31002955 -111268489 - LTR16A1 LTR ERVL -2 455 318 525 241 116 60 chr9 31002955 31003154 -111268290 + MER63A DNA MER1_type 1 210 0 1084 306 67 16 chr9 31003154 31003439 -111268005 - LTR16A1 LTR ERVL -139 318 2 1340 307 101 22 chr9 31004101 31004867 -111266577 + L1M3a LINE L1 2 728 -5227 837 158 49 18 chr9 31004864 31005028 -111266416 + L1 LINE L1 5128 5296 -850 * 1968 97 3 45 chr9 31005264 31005552 -111265892 - AluSx SINE Alu -4 308 33 463 340 88 4 chr9 31006390 31006628 -111264816 + MIR SINE MIR 3 260 -2 21 36 0 0 chr9 31006977 31007005 -111264439 + AT_rich Low_complexity Low_complexity 1 28 0 282 316 117 0 chr9 31007215 31007421 -111264023 + HAL1 LINE L1 1188 1417 -1090 314 292 21 0 chr9 31007443 31007539 -111263905 - HAL1 LINE L1 -976 1531 1434 239 250 91 0 chr9 31007642 31007730 -111263714 + HAL1 LINE L1 2323 2418 -89 27 73 0 0 chr9 31007815 31007870 -111263574 + AT_rich Low_complexity Low_complexity 1 55 0 533 259 152 13 chr9 31008596 31008754 -111262690 - MER5A DNA MER1_type 0 189 10 25 51 0 0 chr9 31009351 31009390 -111262054 + AT_rich Low_complexity Low_complexity 1 39 0 6795 66 6 3 chr9 31009654 31011120 -111260324 + L1PA8 LINE L1 4698 6164 -8 408 308 9 3 chr9 31011910 31012048 -111259396 + MIR SINE MIR 10 146 -62 3084 133 144 32 chr9 31012460 31013030 -111258414 + MER51A LTR ERV1 1 634 0 3768 179 30 109 chr9 31013030 31014151 -111257293 + MER51A-int LTR ERV1 1 1007 -3873 * 8049 137 65 16 chr9 31014121 31015635 -111255809 + HERV9 LTR ERV1 455 2043 -6077 778 151 108 11 chr9 31015645 31015831 -111255613 + HERV9 LTR ERV1 3322 3525 -2421 * 910 334 31 31 chr9 31015829 31016680 -111254764 + HERV9 LTR ERV1 4624 6156 -1600 292 185 19 0 chr9 31016848 31016902 -111254542 + HERV9 LTR ERV1 7488 7542 -274 274 263 26 26 chr9 31017055 31017169 -111254275 + HERV9 LTR ERV1 6662 6775 -1624 1504 168 4 0 chr9 31017647 31017903 -111253541 + HERV9 LTR ERV1 7558 7814 -2 2206 112 87 1 chr9 31017909 31018411 -111253033 + MER51A LTR ERV1 1 616 -18 724 193 0 30 chr9 31018569 31018704 -111252740 - FLAM_A SINE Alu 0 133 3 188 340 10 30 chr9 31018731 31018831 -111252613 + L2 LINE L2 2610 2707 -607 382 308 25 17 chr9 31019165 31019285 -111252159 - MIR SINE MIR -69 139 19 382 225 108 0 chr9 31020281 31020401 -111251043 - L1ME4a LINE L1 -237 5884 5752 2163 121 0 0 chr9 31020964 31021262 -111250182 + AluSg SINE Alu 1 298 -12 1885 143 76 12 chr9 31021316 31021658 -111249786 - L1MB2 LINE L1 0 6171 5808 425 339 135 28 chr9 31021907 31022559 -111248885 + L2 LINE L2 1625 2346 -968 216 388 39 8 chr9 31022889 31023018 -111248426 + MIR3 SINE MIR 69 201 -7 721 297 31 9 chr9 31023466 31023695 -111247749 + MIR SINE MIR 29 262 0 202 315 41 0 chr9 31024361 31024434 -111247010 - MIR SINE MIR -89 173 98 1773 260 58 30 chr9 31024526 31025095 -111246349 + MLT1E LTR MaLR 1 585 -8 23 0 0 0 chr9 31025101 31025124 -111246320 + AT_rich Low_complexity Low_complexity 1 23 0 880 342 26 6 chr9 31025202 31025553 -111245891 + L1M3d LINE L1 423 780 -5523 3142 252 98 25 chr9 31025725 31028276 -111243168 + L1M3d LINE L1 777 3409 -2973 4102 197 33 42 chr9 31028301 31029361 -111242083 + L1M3d LINE L1 4195 5245 -1137 3895 173 17 4 chr9 31029358 31030079 -111241365 - L1P LINE L1 -895 5251 4522 * 228 189 19 19 chr9 31031554 31031627 -111239817 + (TATG)n Simple_repeat Simple_repeat 1 73 0 1649 101 4 0 chr9 31031843 31032070 -111239374 + AluSc SINE Alu 82 309 0 325 68 356 0 chr9 31032106 31032165 -111239279 + MADE1 DNA Mariner 1 80 0 23 78 0 0 chr9 31032845 31032896 -111238548 + AT_rich Low_complexity Low_complexity 1 51 0 220 276 38 57 chr9 31034037 31034142 -111237302 - MIR SINE MIR -103 159 57 23 54 0 0 chr9 31034871 31034908 -111236536 + AT_rich Low_complexity Low_complexity 1 37 0 298 244 47 0 chr9 31034954 31035040 -111236404 + AluJo SINE Alu 62 151 -151 758 346 35 77 chr9 31035041 31035648 -111235796 + L1PA13 LINE L1 798 1378 -6196 4646 246 34 19 chr9 31035751 31037579 -111233865 + L1PA13 LINE L1 2203 4069 -3515 244 262 36 0 chr9 31037586 31037670 -111233774 + L1PA13 LINE L1 4847 4933 -2651 * 5019 143 31 0 chr9 31037659 31038489 -111232955 + L1PA16 LINE L1 5301 6156 -10 28 29 0 0 chr9 31038490 31038525 -111232919 + AT_rich Low_complexity Low_complexity 1 35 0 2410 55 0 19 chr9 31039849 31040157 -111231287 + AluY SINE Alu 1 302 -9 277 286 158 41 chr9 31040587 31040783 -111230661 + MIR SINE MIR 17 235 -27 1475 187 6 48 chr9 31043747 31044062 -111227382 + AluJo SINE Alu 1 302 -10 228 167 0 0 chr9 31044413 31044461 -111226983 + (TG)n Simple_repeat Simple_repeat 1 48 0 * 255 103 0 0 chr9 31044460 31044499 -111226945 + (GA)n Simple_repeat Simple_repeat 1 39 0 1877 101 19 4 chr9 31045261 31045518 -111225926 + AluSq SINE Alu 1 261 -52 858 254 0 5 chr9 31045737 31045926 -111225518 - MER5A DNA MER1_type -1 188 1 489 293 153 22 chr9 31045967 31046189 -111225255 + MIR SINE MIR 2 252 -10 3103 126 64 66 chr9 31046465 31047074 -111224370 + LTR18B LTR ERVL 1 608 -6 855 217 44 6 chr9 31047218 31047398 -111224046 - MER5A DNA MER1_type -1 188 2 2115 135 0 0 chr9 31047610 31047906 -111223538 - AluSx SINE Alu -16 296 1 26 64 0 0 chr9 31048405 31048452 -111222992 + AT_rich Low_complexity Low_complexity 1 47 0 210 219 0 0 chr9 31048652 31048693 -111222751 + GA-rich Low_complexity Low_complexity 2 42 0 1621 291 98 17 chr9 31049497 31050039 -111221405 + MLT1G1 LTR MaLR 3 588 -7 225 65 0 0 chr9 31050392 31050423 -111221021 + (CA)n Simple_repeat Simple_repeat 2 32 0 347 175 33 183 chr9 31050947 31051067 -111220377 - L2 LINE L2 -9 3304 3203 236 233 221 12 chr9 31052099 31052185 -111219259 + MER102b DNA MER1_type 235 338 -3 270 359 46 23 chr9 31053769 31053900 -111217544 + MIR SINE MIR 16 149 -59 503 322 44 67 chr9 31054081 31054441 -111217003 + MLT1L LTR MaLR 127 478 -137 2103 117 27 0 chr9 31054634 31054934 -111216510 - AluSx SINE Alu -4 308 1 5343 122 24 15 chr9 31055062 31055407 -111216037 + L1PB4 LINE L1 5237 5577 -579 1935 112 24 0 chr9 31055407 31055720 -111215724 + AluSc SINE Alu 1 309 0 5343 122 24 15 chr9 31055720 31056286 -111215158 + L1PB4 LINE L1 5577 6156 0 320 315 132 21 chr9 31056456 31056691 -111214753 + L1MC/D LINE L1 5356 5616 -2192 337 205 0 12 chr9 31057260 31057343 -111214101 + L1MC/D LINE L1 5712 5793 -2015 21 0 0 0 chr9 31058254 31058275 -111213169 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 31059478 31059499 -111211945 + AT_rich Low_complexity Low_complexity 1 21 0 2124 132 0 0 chr9 31060665 31060961 -111210483 + AluSg SINE Alu 1 296 -14 2152 79 0 0 chr9 31061209 31061475 -111209969 - AluSg SINE Alu -8 302 37 21 0 0 0 chr9 31061516 31061537 -111209907 + AT_rich Low_complexity Low_complexity 1 21 0 422 285 106 0 chr9 31061765 31061916 -111209528 - MIR SINE MIR -11 251 85 272 257 14 14 chr9 31063009 31063079 -111208365 - MIR SINE MIR -118 144 75 429 220 121 38 chr9 31063118 31063250 -111208194 + MER69A DNA AcHobo 33 175 -2 1815 151 0 0 chr9 31063734 31064022 -111207422 - AluSq SINE Alu 0 308 21 210 167 0 0 chr9 31064075 31064111 -111207333 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 277 359 67 50 chr9 31064115 31064474 -111206970 - L2 LINE L2 0 3313 2949 511 274 0 32 chr9 31064528 31064652 -111206792 + FLAM_A SINE Alu 1 120 -13 234 0 0 0 chr9 31064652 31064678 -111206766 + (TTAA)n Simple_repeat Simple_repeat 2 27 0 396 0 0 0 chr9 31064845 31064889 -111206555 + (TA)n Simple_repeat Simple_repeat 2 45 0 2166 122 0 0 chr9 31065095 31065391 -111206053 - AluSx SINE Alu -16 296 1 221 185 0 19 chr9 31066542 31066596 -111204848 + A-rich Low_complexity Low_complexity 3 55 0 399 292 61 57 chr9 31066807 31066981 -111204463 + MIR SINE MIR 21 194 -52 23 33 0 0 chr9 31067019 31067049 -111204395 + AT_rich Low_complexity Low_complexity 1 30 0 209 349 58 0 chr9 31067637 31067723 -111203721 - MER91C DNA MER1_type -49 91 1 286 259 19 83 chr9 31069259 31069367 -111202077 + L2 LINE L2 3213 3313 0 394 161 35 0 chr9 31070351 31070438 -111201006 + CT-rich Low_complexity Low_complexity 3 92 0 931 295 127 28 chr9 31070608 31071106 -111200338 - MLT1H LTR MaLR -2 547 1 249 363 39 10 chr9 31071764 31071866 -111199578 + MIR3 SINE MIR 89 193 -15 341 290 84 0 chr9 31072466 31072573 -111198871 + MIR SINE MIR 121 236 -26 255 330 9 28 chr9 31072720 31072829 -111198615 - MIR SINE MIR -86 122 16 189 0 0 0 chr9 31073467 31073488 -111197956 + (T)n Simple_repeat Simple_repeat 1 21 0 21 57 0 0 chr9 31073657 31073692 -111197752 + AT_rich Low_complexity Low_complexity 1 35 0 6364 63 12 94 chr9 31073704 31074743 -111196701 - SVA Other Other 0 1386 433 5834 54 17 60 chr9 31074847 31075752 -111195692 - SVA Other Other -520 866 1 25 0 0 0 chr9 31075824 31075849 -111195595 + AT_rich Low_complexity Low_complexity 1 25 0 28 29 0 0 chr9 31075965 31076000 -111195444 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr9 31076395 31076416 -111195028 + AT_rich Low_complexity Low_complexity 1 21 0 269 277 62 0 chr9 31077433 31077498 -111193946 - L2 LINE L2 -16 3256 3188 440 256 26 103 chr9 31078498 31078654 -111192790 + MER91A DNA MER1_type 9 152 -44 240 268 134 18 chr9 31079695 31079879 -111191565 + MIR SINE MIR 42 247 -15 2330 231 75 26 chr9 31080441 31080711 -111190733 - L1MD2 LINE L1 -73 6286 6017 568 286 30 90 chr9 31080711 31081032 -111190412 - L1MB8 LINE L1 -171 6007 5729 285 51 0 0 chr9 31081032 31081071 -111190373 + (TG)n Simple_repeat Simple_repeat 2 40 0 568 286 30 90 chr9 31081071 31081280 -111190164 - L1MB8 LINE L1 -449 5729 5509 575 216 93 25 chr9 31081569 31081731 -111189713 + MER105 DNA DNA 31 203 -1 24 32 0 0 chr9 31083164 31083195 -111188249 + AT_rich Low_complexity Low_complexity 1 31 0 582 310 42 61 chr9 31084659 31085036 -111186408 - MLT1I LTR MaLR -13 396 27 3074 157 43 12 chr9 31086218 31086804 -111184640 - L1MC3 LINE L1 -2 7783 7180 256 240 40 13 chr9 31086804 31086879 -111184565 - MLT1F1 LTR MaLR -456 111 35 511 175 29 0 chr9 31086879 31086982 -111184462 - L1MC3 LINE L1 -688 7097 6992 300 125 0 18 chr9 31087007 31087063 -111184381 - L1MB8 LINE L1 -5 6173 6119 296 326 30 53 chr9 31087534 31087666 -111183778 - MIR SINE MIR -61 147 19 28 29 0 0 chr9 31087864 31087899 -111183545 + AT_rich Low_complexity Low_complexity 1 35 0 190 374 30 0 chr9 31089002 31089101 -111182343 + L3 LINE CR1 1452 1553 -24 311 285 15 80 chr9 31090085 31090222 -111181222 + L2 LINE L2 3141 3268 -4 269 191 48 0 chr9 31090359 31090422 -111181022 - L1ME LINE L1 -369 5793 5728 * 2142 241 90 10 chr9 31090406 31090743 -111180701 - L1ME LINE L1 -1894 4252 3943 1947 110 57 3 chr9 31090743 31091025 -111180419 - AluSc SINE Alu -12 297 1 2142 241 90 10 chr9 31091025 31091389 -111180055 - L1ME LINE L1 -2203 3943 3495 1474 225 45 5 chr9 31091403 31091803 -111179641 - L1MB8 LINE L1 -1 6177 5762 240 253 25 13 chr9 31091810 31091889 -111179555 - L1ME LINE L1 -2634 3512 3433 418 305 43 65 chr9 31091923 31092202 -111179242 - L1MB8 LINE L1 -463 5658 5386 258 250 0 0 chr9 31092698 31092770 -111178674 + (TA)n Simple_repeat Simple_repeat 1 72 0 295 213 28 28 chr9 31092785 31092893 -111178551 + (TA)n Simple_repeat Simple_repeat 1 108 0 24 0 0 0 chr9 31094153 31094177 -111177267 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr9 31094278 31094299 -111177145 + AT_rich Low_complexity Low_complexity 1 21 0 265 345 47 14 chr9 31094395 31094554 -111176890 - MIR SINE MIR -57 151 3 21 36 0 0 chr9 31095038 31095066 -111176378 + AT_rich Low_complexity Low_complexity 1 28 0 207 162 0 0 chr9 31095183 31095220 -111176224 + GA-rich Low_complexity Low_complexity 3 39 0 21 0 0 0 chr9 31095337 31095358 -111176086 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 31096380 31096402 -111175042 + AT_rich Low_complexity Low_complexity 1 22 0 256 24 24 24 chr9 31097235 31097277 -111174167 + (TTCTC)n Simple_repeat Simple_repeat 5 46 0 373 300 148 77 chr9 31097765 31098271 -111173173 + L1M2 LINE L1 359 900 -5949 22 0 0 0 chr9 31098276 31098298 -111173146 + AT_rich Low_complexity Low_complexity 1 22 0 26 50 0 0 chr9 31099150 31099190 -111172254 + GC_rich Low_complexity Low_complexity 1 40 0 241 235 0 0 chr9 31099277 31099328 -111172116 + (CACG)n Simple_repeat Simple_repeat 3 53 0 268 360 72 0 chr9 31102252 31102363 -111169081 + L2 LINE L2 3121 3239 -33 198 0 0 0 chr9 31102375 31102397 -111169047 + (ATG)n Simple_repeat Simple_repeat 3 24 0 253 338 120 40 chr9 31102404 31102629 -111168815 - MIR SINE MIR -12 250 8 787 149 13 1 chr9 31102972 31103110 -111168334 + L1MB1 LINE L1 6025 6176 -7 370 271 25 0 chr9 31103266 31103384 -111168060 + L1MC4a LINE L1 5781 5901 -1907 186 43 0 0 chr9 31103588 31103611 -111167833 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1212 196 12 154 chr9 31103721 31104144 -111167300 - MLT1A2 LTR MaLR -11 363 1 616 305 64 4 chr9 31104615 31104848 -111166596 - MIR SINE MIR 0 262 16 287 324 82 60 chr9 31104994 31105044 -111166400 - MIR SINE MIR -29 233 186 2127 130 0 3 chr9 31105044 31105343 -111166101 - AluSg SINE Alu -12 298 1 287 324 82 60 chr9 31105343 31105474 -111165970 - MIR SINE MIR -76 186 48 262 297 14 0 chr9 31106184 31106258 -111165186 + MIR SINE MIR 15 89 -173 1509 194 29 57 chr9 31106543 31106893 -111164551 + MLT1B LTR MaLR 47 386 -4 464 306 172 47 chr9 31107838 31108221 -111163223 - MLT1J LTR MaLR -53 458 28 25 0 0 0 chr9 31108469 31108494 -111162950 + AT_rich Low_complexity Low_complexity 1 25 0 25 0 0 0 chr9 31109141 31109166 -111162278 + AT_rich Low_complexity Low_complexity 1 25 0 2318 115 3 0 chr9 31109539 31109851 -111161593 - AluSq SINE Alu 0 313 1 552 184 0 18 chr9 31109877 31109991 -111161453 - L1MA9 LINE L1 -36 6276 6165 218 276 10 31 chr9 31109991 31110022 -111161422 + (TA)n Simple_repeat Simple_repeat 2 32 -65 213 65 0 0 chr9 31110022 31110053 -111161391 + (TG)n Simple_repeat Simple_repeat 2 32 0 218 276 10 31 chr9 31110053 31110119 -111161325 + (TA)n Simple_repeat Simple_repeat 32 97 0 437 113 73 104 chr9 31110152 31110294 -111161150 + L1MA9 LINE L1 5975 6104 -196 26 30 0 0 chr9 31110525 31110558 -111160886 + AT_rich Low_complexity Low_complexity 1 33 0 2192 110 0 0 chr9 31110699 31110991 -111160453 + AluSc SINE Alu 1 292 -17 902 252 87 33 chr9 31111155 31111679 -111159765 - L1ME LINE L1 -389 5773 5214 240 286 48 0 chr9 31113091 31113154 -111158290 + L2 LINE L2 3201 3266 -6 698 348 159 21 chr9 31113902 31114885 -111156559 + L3 LINE CR1 76 1193 -384 230 270 79 11 chr9 31115267 31115356 -111156088 + L3 LINE CR1 1452 1546 -31 2638 154 66 16 chr9 31115627 31115948 -111155496 + MER41E LTR ERV1 1 357 -155 2023 117 4 0 chr9 31115948 31116253 -111155191 - AluSp SINE Alu 0 306 1 2638 154 66 16 chr9 31116253 31116418 -111155026 + MER41E LTR ERV1 357 512 0 397 321 130 40 chr9 31116570 31116969 -111154475 + L2 LINE L2 2863 3297 -16 380 314 17 46 chr9 31117650 31117825 -111153619 - MIR SINE MIR -92 170 1 499 223 13 107 chr9 31118516 31118704 -111152740 + MER63A DNA MER1_type 39 210 0 536 165 0 0 chr9 31119138 31119223 -111152221 - AluSg/x SINE Alu -39 270 186 309 296 75 75 chr9 31119544 31119730 -111151714 + MIR3 SINE MIR 23 208 0 1264 237 19 24 chr9 31120008 31120383 -111151061 + MLT1A2 LTR MaLR 1 467 0 263 210 80 70 chr9 31120931 31121031 -111150413 - MIR SINE MIR 0 262 162 414 279 29 15 chr9 31121088 31121224 -111150220 - MIR SINE MIR -105 157 20 238 378 61 65 chr9 31121224 31121502 -111149942 + L2 LINE L2 2990 3266 -6 25 51 0 0 chr9 31121685 31121724 -111149720 + AT_rich Low_complexity Low_complexity 1 39 0 21 57 0 0 chr9 31122930 31122965 -111148479 + AT_rich Low_complexity Low_complexity 1 35 0 1067 251 28 3 chr9 31123821 31124112 -111147332 - L1MA9 LINE L1 -39 6273 5976 563 200 8 8 chr9 31124110 31124240 -111147204 + L1MA9 LINE L1 5816 5945 -367 * 952 243 60 71 chr9 31125117 31125266 -111146178 - LTR16A1 LTR ERVL 0 457 308 1100 156 45 0 chr9 31125266 31125445 -111145999 + MER5A DNA MER1_type 3 189 0 952 243 60 71 chr9 31125445 31125661 -111145783 - LTR16A1 LTR ERVL -149 308 96 28 0 0 0 chr9 31127428 31127456 -111143988 + AT_rich Low_complexity Low_complexity 1 28 0 1967 210 32 0 chr9 31128264 31128668 -111142776 + L1PA16 LINE L1 5740 6156 -10 582 330 89 69 chr9 31129664 31130312 -111141132 + MLT2F LTR ERVL 3 663 0 264 59 0 0 chr9 31130721 31130755 -111140689 + (CAAAA)n Simple_repeat Simple_repeat 3 36 0 3131 299 33 18 chr9 31131138 31132163 -111139281 + ERVL-F LTR ERVL 3242 4282 -1482 260 245 142 9 chr9 31132260 31132366 -111139078 + ERVL-F LTR ERVL 5630 5749 -15 316 292 52 0 chr9 31132374 31132470 -111138974 + MLT2F LTR ERVL 4 104 -524 1277 116 0 0 chr9 31132488 31132660 -111138784 + AluSg/x SINE Alu 129 300 -10 909 276 148 30 chr9 31132707 31133141 -111138303 + MLT2F LTR ERVL 179 663 0 345 48 63 16 chr9 31134052 31134115 -111137329 + GA-rich Low_complexity Low_complexity 4 69 0 1218 54 0 7 chr9 31135016 31135189 -111136255 + AluY SINE Alu 144 315 0 183 331 113 33 chr9 31135474 31135625 -111135819 + MIR3 SINE MIR 16 178 -30 673 279 40 87 chr9 31136983 31137305 -111134139 + LTR16B LTR ERVL 3 309 -155 372 333 26 16 chr9 31137914 31138106 -111133338 + L3 LINE CR1 1207 1400 -177 237 125 54 0 chr9 31138714 31138770 -111132674 + (TA)n Simple_repeat Simple_repeat 1 59 0 1997 122 27 61 chr9 31138861 31139237 -111132207 + L1PA16 LINE L1 5801 6163 -3 345 24 0 0 chr9 31139638 31139680 -111131764 + (CA)n Simple_repeat Simple_repeat 2 43 0 333 300 94 12 chr9 31141242 31141402 -111130042 - MLT1L LTR MaLR -301 314 142 832 331 83 2 chr9 31142281 31142689 -111128755 - LTR16A LTR ERVL -2 448 8 2036 336 71 52 chr9 31142966 31145108 -111126336 - MERVL LTR ERVL -664 4821 2721 297 0 0 0 chr9 31145108 31145141 -111126303 + (CA)n Simple_repeat Simple_repeat 2 34 0 2036 336 71 52 chr9 31145141 31145159 -111126285 - MERVL LTR ERVL -2764 2721 2705 270 81 0 0 chr9 31145159 31145196 -111126248 + (TG)n Simple_repeat Simple_repeat 1 37 0 2036 336 71 52 chr9 31145196 31145479 -111125965 - MERVL LTR ERVL -2780 2705 2331 369 301 29 40 chr9 31145546 31145719 -111125725 - MERVL LTR ERVL -2762 2234 2064 428 347 43 20 chr9 31145737 31146037 -111125407 - MERVL LTR ERVL -3493 2161 1855 317 269 32 0 chr9 31146079 31146172 -111125272 - MERVL LTR ERVL -3214 1782 1687 2379 312 49 52 chr9 31146198 31147497 -111123947 - MERVL LTR ERVL -3426 1570 276 248 330 71 0 chr9 31147923 31148035 -111123409 - LTR16A LTR ERVL -322 128 9 216 0 0 0 chr9 31148481 31148505 -111122939 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 226 274 0 32 chr9 31148832 31148894 -111122550 - L2 LINE L2 -32 3281 3222 33 25 0 0 chr9 31150111 31150151 -111121293 + AT_rich Low_complexity Low_complexity 1 40 0 13520 141 43 7 chr9 31150369 31152698 -111118746 + Tigger1 DNA MER2_type 1 2414 -4 207 246 14 72 chr9 31153125 31153194 -111118250 + MIR3 SINE MIR 92 156 -52 327 203 0 0 chr9 31154251 31154325 -111117119 + (TA)n Simple_repeat Simple_repeat 1 74 0 340 324 176 11 chr9 31154436 31154708 -111116736 + L1ME3A LINE L1 4742 5058 -1088 1140 288 60 21 chr9 31154716 31155403 -111116041 + L1ME3A LINE L1 5114 5833 -337 21 57 0 0 chr9 31155484 31155519 -111115925 + AT_rich Low_complexity Low_complexity 1 35 0 42449 55 4 0 chr9 31155908 31162036 -111109408 + L1PA5 LINE L1 3 6154 0 530 303 50 50 chr9 31162762 31162980 -111108464 + MIR SINE MIR 2 219 -43 6750 186 28 46 chr9 31163656 31165170 -111106274 - L1P4 LINE L1 -642 5524 4061 1638 206 3 0 chr9 31165170 31165462 -111105982 - AluJb SINE Alu -17 295 3 6750 186 28 46 chr9 31165462 31165809 -111105635 - L1P4 LINE L1 -2105 4061 3709 3700 136 25 2 chr9 31165809 31166404 -111105040 + L1PA16 LINE L1 5555 6163 -3 638 249 56 42 chr9 31167250 31167463 -111103981 - MER20 DNA MER1_type -3 216 1 196 402 22 0 chr9 31168415 31168507 -111102937 + MIR3 SINE MIR 69 162 -46 250 347 127 20 chr9 31169821 31169971 -111101473 + MIR3 SINE MIR 18 183 -25 2135 172 85 7 chr9 31170122 31170558 -111100886 + MLT2B1 LTR ERVL 1 470 -50 2541 153 13 22 chr9 31170559 31171009 -111100435 - Tigger2 DNA MER2_type 0 2718 2273 335 232 0 0 chr9 31170999 31171068 -111100376 - Tigger2 DNA MER2_type -2649 69 1 * 316 258 0 17 chr9 31171069 31171189 -111100255 + (TA)n Simple_repeat Simple_repeat 2 119 0 278 122 0 0 chr9 31171197 31171238 -111100206 + MLT2B1 LTR ERVL 475 515 -5 555 234 82 35 chr9 31171559 31171730 -111099714 + LTR41 LTR ERVL 1 179 -594 307 77 77 11 chr9 31172426 31172517 -111098927 + (TA)n Simple_repeat Simple_repeat 1 97 0 989 158 0 0 chr9 31172518 31172664 -111098780 - FRAM SINE Alu -23 153 8 763 268 45 32 chr9 31172998 31173375 -111098069 - L1M4 LINE L1 -798 5348 4967 795 176 0 0 chr9 31173852 31173971 -111097473 + FLAM_C SINE Alu 1 119 -14 356 198 0 12 chr9 31173978 31174064 -111097380 + (TG)n Simple_repeat Simple_repeat 1 85 0 551 224 151 23 chr9 31174262 31174566 -111096878 + L1M4 LINE L1 4264 4606 -1540 489 172 0 0 chr9 31174645 31174738 -111096706 + (TATATG)n Simple_repeat Simple_repeat 2 94 0 951 215 39 5 chr9 31174771 31174976 -111096468 - MER20 DNA MER1_type -7 212 1 2340 149 20 2 chr9 31175037 31175433 -111096011 - MER57A LTR ERV1 0 403 1 429 320 51 11 chr9 31175706 31175884 -111095560 + LTR16C LTR ERVL 307 491 0 26 50 0 0 chr9 31176142 31176182 -111095262 + AT_rich Low_complexity Low_complexity 1 40 0 332 373 79 18 chr9 31176183 31176513 -111094931 + L2 LINE L2 1738 2087 -1227 221 311 14 14 chr9 31177059 31177133 -111094311 - L2 LINE L2 -47 3225 3152 1104 158 93 23 chr9 31177178 31177254 -111094190 - L1MA9 LINE L1 -70 6242 6173 246 95 0 0 chr9 31177254 31177296 -111094148 + (TG)n Simple_repeat Simple_repeat 2 43 0 1104 158 93 23 chr9 31177296 31177478 -111093966 - L1MA9 LINE L1 -139 6173 5966 982 231 21 4 chr9 31177486 31177767 -111093677 - L1 LINE L1 -2649 3497 3212 665 149 0 0 chr9 31177784 31177905 -111093539 - L1PA15 LINE L1 -4 6161 6041 3880 18 0 0 chr9 31177907 31178352 -111093092 - L1PA3 LINE L1 0 6155 5711 4663 154 69 2 chr9 31178360 31179282 -111092162 - L1PA15 LINE L1 -133 6032 5039 299 190 100 0 chr9 31179277 31179377 -111092067 - L1 LINE L1 -2932 3214 3105 * 3050 264 49 21 chr9 31179376 31180322 -111091122 + L1M1 LINE L1 2814 3822 -3743 1815 178 0 3 chr9 31180322 31180614 -111090830 + AluSx SINE Alu 14 304 -8 3050 264 49 21 chr9 31180614 31181315 -111090129 + L1M1 LINE L1 3822 4502 -3063 230 348 42 42 chr9 31181638 31181756 -111089688 + MIR SINE MIR 12 129 -133 2015 194 34 12 chr9 31181847 31182260 -111089184 + MSTB LTR MaLR 5 426 0 229 328 0 0 chr9 31182512 31182576 -111088868 + MIR SINE MIR 82 145 -63 210 239 185 24 chr9 31182729 31182845 -111088599 - MIR SINE MIR -67 141 16 505 0 31 0 chr9 31183036 31183101 -111088343 + (TCTA)n Simple_repeat Simple_repeat 1 67 0 238 288 207 0 chr9 31183711 31183822 -111087622 + MIR SINE MIR 57 190 -72 275 335 6 37 chr9 31184508 31184669 -111086775 - L2 LINE L2 -715 2599 2444 424 330 95 6 chr9 31184795 31184974 -111086470 - MIR SINE MIR -67 195 1 191 340 126 29 chr9 31184979 31185217 -111086227 + L3b LINE CR1 1152 1412 -171 340 254 53 44 chr9 31185506 31185544 -111085900 + L1ME4a LINE L1 5323 5359 -762 2338 104 0 0 chr9 31185544 31185853 -111085591 + AluSc SINE Alu 1 309 0 340 254 53 44 chr9 31185853 31185928 -111085516 + L1ME4a LINE L1 5359 5437 -684 1330 241 0 0 chr9 31185969 31186235 -111085209 - AluJb SINE Alu -42 270 5 422 281 48 0 chr9 31186366 31186512 -111084932 - MIR SINE MIR 0 262 110 447 225 115 54 chr9 31186584 31186775 -111084669 + L1ME4a LINE L1 5586 5758 -363 6190 93 19 6 chr9 31186781 31187935 -111083509 + L1PA10 LINE L1 4998 6168 0 301 329 91 13 chr9 31187938 31188169 -111083275 + L1ME4a LINE L1 5827 6075 -46 600 284 41 6 chr9 31189209 31189378 -111082066 + MIR SINE MIR 23 197 -65 1833 126 201 6 chr9 31189549 31189907 -111081537 - MSTA LTR MaLR 0 428 1 437 286 54 49 chr9 31190328 31190384 -111081060 + MIR SINE MIR 37 91 -171 1920 133 67 25 chr9 31190384 31190744 -111080700 - THE1C LTR MaLR 0 375 1 437 286 54 49 chr9 31190744 31190911 -111080533 + MIR SINE MIR 91 261 -1 388 257 105 41 chr9 31191542 31191713 -111079731 - LTR16A LTR ERVL -12 438 257 6967 14 0 0 chr9 31191714 31192508 -111078936 + L1PA2 LINE L1 5360 6153 -2 225 0 0 0 chr9 31192522 31192547 -111078897 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 25 0 0 0 chr9 31192565 31192590 -111078854 + AT_rich Low_complexity Low_complexity 1 25 0 683 332 29 4 chr9 31192590 31192831 -111078613 - LTR16A LTR ERVL -196 254 8 26 0 0 0 chr9 31193766 31193792 -111077652 + AT_rich Low_complexity Low_complexity 1 26 0 1943 139 27 35 chr9 31193847 31194221 -111077223 - THE1C LTR MaLR -4 371 1 35 41 0 0 chr9 31195495 31195544 -111075900 + AT_rich Low_complexity Low_complexity 1 49 0 261 102 114 114 chr9 31196627 31196715 -111074729 - MER69 DNA AcHobo -14 2512 2425 239 269 148 108 chr9 31196968 31197347 -111074097 + L2 LINE L2 2920 3313 0 254 292 131 62 chr9 31197397 31197527 -111073917 - MIR3 SINE MIR -40 168 30 388 125 0 115 chr9 31197653 31197757 -111073687 - MER69 DNA AcHobo -14 2512 2421 783 286 64 35 chr9 31197765 31197869 -111073575 - MER69 DNA AcHobo -841 385 286 1700 147 22 0 chr9 31197869 31197991 -111073453 + AluSx SINE Alu 2 120 -192 353 58 19 0 chr9 31197991 31198043 -111073401 + (CA)n Simple_repeat Simple_repeat 2 54 0 1700 147 22 0 chr9 31198043 31198192 -111073252 + AluSx SINE Alu 120 279 -33 450 0 0 0 chr9 31198192 31198242 -111073202 + (TAAA)n Simple_repeat Simple_repeat 4 53 0 783 286 64 35 chr9 31198242 31198510 -111072934 - MER69 DNA AcHobo -939 287 1 503 322 28 6 chr9 31199143 31199320 -111072124 + MIR SINE MIR 23 203 -59 202 340 38 28 chr9 31199471 31199577 -111071867 + L2 LINE L2 3153 3259 -13 21 0 0 0 chr9 31199670 31199691 -111071753 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 31200615 31200636 -111070808 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr9 31200934 31200966 -111070478 + AT_rich Low_complexity Low_complexity 1 32 0 221 0 0 33 chr9 31202238 31202268 -111069176 + (TTTAA)n Simple_repeat Simple_repeat 2 30 0 238 49 24 24 chr9 31202712 31202753 -111068691 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 22 0 0 0 chr9 31203875 31203897 -111067547 + AT_rich Low_complexity Low_complexity 1 22 0 220 301 49 73 chr9 31205360 31205483 -111065961 - MER5A DNA MER1_type -1 188 69 304 293 12 0 chr9 31206206 31206288 -111065156 - MIR3 SINE MIR -14 194 112 255 235 0 15 chr9 31207424 31207492 -111063952 + MLT1L LTR MaLR 547 613 -2 1368 228 5 76 chr9 31208492 31208887 -111062557 - MLT1A2 LTR MaLR 0 374 8 2337 55 3 0 chr9 31209293 31209584 -111061860 + AluY SINE Alu 1 292 -19 503 279 81 17 chr9 31209890 31210062 -111061382 - MIR SINE MIR -44 218 36 409 224 0 0 chr9 31211587 31211672 -111059772 + MER67D LTR ERV1 1 85 -429 * 1630 210 47 49 chr9 31211655 31212190 -111059254 + MER67C LTR ERV1 12 511 -3 458 263 53 53 chr9 31212198 31212499 -111058945 - L1ME LINE L1 -613 5557 5257 1545 188 7 0 chr9 31212690 31212962 -111058482 - AluJo SINE Alu -26 286 13 288 268 12 0 chr9 31213338 31213420 -111058024 + (TA)n Simple_repeat Simple_repeat 2 84 0 395 233 80 52 chr9 31213467 31213716 -111057728 + L1MC5 LINE L1 7416 7671 -290 2279 96 36 183 chr9 31213716 31214247 -111057197 + MLT2A2 LTR ERVL 1 453 0 2805 60 3 16 chr9 31214275 31214655 -111056789 - L1PA8 LINE L1 -6 6166 5792 1168 35 7 0 chr9 31214655 31214800 -111056644 + L1PA8 LINE L1 5621 5766 -406 1030 174 32 28 chr9 31214797 31215050 -111056394 + L1MC5 LINE L1 7676 7929 -32 * 335 294 17 25 chr9 31215209 31215328 -111056116 - MLT1H LTR MaLR -6 543 426 270 126 0 200 chr9 31215818 31215913 -111055531 - MLT1-int LTR MaLR -208 1163 1088 360 288 77 12 chr9 31215990 31216160 -111055284 + MER58C DNA MER1_type 3 183 -32 235 118 0 78 chr9 31216373 31216424 -111055020 - MLT1-int LTR MaLR -502 869 823 286 243 0 14 chr9 31216994 31217068 -111054376 - MLT1-int LTR MaLR -1662 73 1 3307 175 28 58 chr9 31217876 31218125 -111053319 - MER44D DNA MER2_type -1882 705 450 2017 110 20 10 chr9 31218125 31218417 -111053027 - AluSx SINE Alu -17 295 1 3307 175 28 58 chr9 31218417 31218894 -111052550 - MER44D DNA MER2_type -2137 450 1 569 298 82 37 chr9 31219126 31219371 -111052073 - MIR SINE MIR -1 261 6 21 0 0 0 chr9 31219727 31219748 -111051696 + AT_rich Low_complexity Low_complexity 1 21 0 5301 147 15 65 chr9 31219748 31221031 -111050413 + L1MA6 LINE L1 5065 6299 -1 22 0 0 0 chr9 31221032 31221054 -111050390 + AT_rich Low_complexity Low_complexity 1 22 0 31 0 0 0 chr9 31221821 31221852 -111049592 + AT_rich Low_complexity Low_complexity 1 31 0 438 341 39 0 chr9 31222181 31222363 -111049081 + MIR SINE MIR 48 236 -26 1905 177 17 8 chr9 31222565 31222921 -111048523 + Tigger3(Golem) DNA MER2_type 2 2157 -872 2499 267 111 31 chr9 31222923 31224177 -111047267 - L1M4 LINE L1 -2023 4123 2743 1547 209 11 0 chr9 31224177 31224478 -111046966 - AluJb SINE Alu 0 306 3 2499 267 111 31 chr9 31224478 31224624 -111046820 - L1M4 LINE L1 -3403 2743 2610 408 245 89 118 chr9 31226132 31226303 -111045141 - HAL1b LINE L1 -317 1031 856 207 0 0 0 chr9 31226303 31226326 -111045118 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1912 112 4 0 chr9 31226331 31226607 -111044837 - AluSg SINE Alu -33 277 1 2268 68 14 0 chr9 31226616 31226908 -111044536 - AluY SINE Alu -15 296 1 408 245 89 118 chr9 31226908 31227092 -111044352 - HAL1b LINE L1 -504 844 671 926 160 17 52 chr9 31227121 31227169 -111044275 - L1MD1 LINE L1 -1 6241 6193 2108 119 0 3 chr9 31227169 31227462 -111043982 - AluSx SINE Alu -20 292 1 926 160 17 52 chr9 31227462 31227644 -111043800 - L1MD1 LINE L1 -49 6193 6019 431 186 153 0 chr9 31227646 31227770 -111043674 - L1MD1 LINE L1 -168 6074 5932 3333 127 41 2 chr9 31227888 31228423 -111043021 - L1PB2 LINE L1 0 6151 5596 927 139 65 46 chr9 31228433 31228649 -111042795 - L1MD2 LINE L1 -3 6356 6137 438 69 0 0 chr9 31228654 31228712 -111042732 + (TA)n Simple_repeat Simple_repeat 1 58 0 3359 226 66 14 chr9 31228754 31229691 -111041753 - L1MDa LINE L1 -4887 1653 668 2524 175 83 20 chr9 31230137 31230691 -111040753 - L1MC3 LINE L1 -6 7779 7191 237 300 10 30 chr9 31230735 31230835 -111040609 - MLT1F1 LTR MaLR -457 110 13 273 197 13 0 chr9 31230847 31230923 -111040521 - L1MC3 LINE L1 -739 7046 6970 509 152 9 27 chr9 31231366 31231478 -111039966 - L1 LINE L1 -1656 4490 4381 22 0 0 0 chr9 31232193 31232215 -111039229 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr9 31232484 31232505 -111038939 + AT_rich Low_complexity Low_complexity 1 21 0 256 330 19 0 chr9 31232607 31232710 -111038734 + CT-rich Low_complexity Low_complexity 2 106 0 275 363 149 40 chr9 31232761 31233552 -111037892 + L3 LINE CR1 700 1576 -1 1673 200 116 35 chr9 31234791 31235255 -111036189 + MLT1D LTR MaLR 1 502 -3 1558 226 48 97 chr9 31235553 31236185 -111035259 - LTR38B LTR ERV1 0 610 10 1934 214 88 39 chr9 31236267 31236780 -111034664 + L1MDa LINE L1 21 558 -5982 234 0 0 0 chr9 31236780 31236806 -111034638 + (CCA)n Simple_repeat Simple_repeat 1 26 0 189 0 0 0 chr9 31236852 31236873 -111034571 + (A)n Simple_repeat Simple_repeat 1 21 0 330 316 43 38 chr9 31237139 31237348 -111034096 + HAL1b LINE L1 464 673 -675 1841 58 0 0 chr9 31237396 31237620 -111033824 + AluY SINE Alu 80 303 -8 445 158 40 0 chr9 31237662 31237738 -111033706 + MER63 DNA MER1_type 672 750 -86 1791 225 59 102 chr9 31237739 31238349 -111033095 + L1MC5 LINE L1 6873 7408 -553 766 101 0 31 chr9 31238349 31238478 -111032966 - L1PA10 LINE L1 0 6168 6044 1791 225 59 102 chr9 31238478 31238923 -111032521 + L1MC5 LINE L1 7408 7871 -90 596 338 73 13 chr9 31239815 31240425 -111031019 - L1ME3A LINE L1 -235 5935 5295 19980 101 23 12 chr9 31240466 31244358 -111027086 - L1PA8 LINE L1 -22 6150 2215 6034 129 44 17 chr9 31244361 31245345 -111026099 + L1P3 LINE L1 346 1355 -5442 5438 139 10 2 chr9 31245350 31246274 -111025170 + L1P3 LINE L1 1849 2828 -3969 382 298 49 18 chr9 31246268 31246597 -111024847 - L1ME3A LINE L1 -839 5307 4969 * 340 281 77 53 chr9 31246624 31247001 -111024443 - L1ME3A LINE L1 -1353 4793 4408 1089 158 0 0 chr9 31247046 31247211 -111024233 - AluSg/x SINE Alu -17 295 131 517 309 52 14 chr9 31247373 31247664 -111023780 - L1ME3A LINE L1 -1949 4197 3896 436 329 44 51 chr9 31247682 31247998 -111023446 - L1ME3A LINE L1 -2392 3754 3441 23 0 0 0 chr9 31248262 31248285 -111023159 + AT_rich Low_complexity Low_complexity 1 23 0 965 296 43 40 chr9 31248540 31248962 -111022482 + LTR16C LTR ERVL 59 481 -10 270 333 22 0 chr9 31250490 31250580 -111020864 + MIR SINE MIR 53 144 -118 315 322 132 48 chr9 31251521 31251878 -111019566 - L2 LINE L2 -8 3305 2919 2083 66 4 0 chr9 31252086 31252359 -111019085 + L1PA3 LINE L1 5882 6155 0 299 276 78 0 chr9 31252405 31252521 -111018923 + Charlie8 DNA MER1_type 98 222 -2195 371 276 57 86 chr9 31252858 31253173 -111018271 - L2 LINE L2 -821 2493 2188 180 356 125 0 chr9 31253377 31253537 -111017907 - L2 LINE L2 -1283 2031 1852 1089 340 88 38 chr9 31253930 31254769 -111016675 - L3 LINE CR1 -206 1371 491 195 353 49 33 chr9 31254832 31254954 -111016490 - L3 LINE CR1 -1188 389 266 4558 51 0 2 chr9 31255298 31255862 -111015582 - L1PA7 LINE L1 -4 6150 5588 215 320 107 0 chr9 31256431 31256506 -111014938 - L2 LINE L2 0 3272 3190 180 0 0 0 chr9 31256964 31256984 -111014460 + (TA)n Simple_repeat Simple_repeat 2 21 0 2163 101 7 0 chr9 31256984 31257281 -111014163 - AluY SINE Alu -12 299 1 674 382 74 32 chr9 31257464 31258184 -111013260 + L2 LINE L2 2216 2965 -349 658 75 9 9 chr9 31259208 31259315 -111012129 + (TA)n Simple_repeat Simple_repeat 1 107 0 291 54 0 0 chr9 31259314 31259351 -111012093 + (CA)n Simple_repeat Simple_repeat 2 38 0 * 356 297 23 57 chr9 31259597 31259772 -111011672 - MIR SINE MIR -74 188 20 660 298 77 77 chr9 31259883 31260097 -111011347 - L2 LINE L2 -35 3278 3066 632 177 20 7 chr9 31260097 31260244 -111011200 + L1MA8 LINE L1 6139 6287 -4 660 298 77 77 chr9 31260244 31260781 -111010663 - L2 LINE L2 -247 3066 2528 181 313 133 23 chr9 31261332 31261460 -111009984 - MIR SINE MIR -64 198 57 30 59 0 0 chr9 31261850 31261901 -111009543 + AT_rich Low_complexity Low_complexity 1 51 0 385 217 63 82 chr9 31262601 31262808 -111008636 + L1MDa LINE L1 2420 2622 -3918 1470 214 158 21 chr9 31262808 31263008 -111008436 + LTR2B LTR ERV1 1 172 -318 321 26 0 0 chr9 31263008 31263046 -111008398 + (TTCTG)n Simple_repeat Simple_repeat 1 38 0 1470 214 158 21 chr9 31263046 31263276 -111008168 + LTR2B LTR ERV1 172 490 0 36893 60 21 15 chr9 31263276 31268138 -111003306 + Harlequin LTR ERV1 1 4895 -2001 14039 63 4 1 chr9 31268126 31269909 -111001535 + Harlequin LTR ERV1 5109 6896 0 * 1874 196 94 26 chr9 31269909 31270368 -111001076 + LTR2B LTR ERV1 1 490 0 1062 284 83 23 chr9 31270375 31270516 -111000928 + L1MDa LINE L1 2624 2755 -3785 5618 56 7 12 chr9 31270516 31271252 -111000192 + L1PA7 LINE L1 5420 6151 -3 1062 284 83 23 chr9 31271252 31271667 -110999777 + L1MDa LINE L1 2755 3213 -3327 * 1230 241 20 3 chr9 31271665 31272006 -110999438 - L1M4 LINE L1 -2135 4011 3665 485 257 16 11 chr9 31272015 31272198 -110999246 - L1M4 LINE L1 -2526 3620 3437 935 253 89 14 chr9 31272316 31273200 -110998244 - L1M4 LINE L1 -2892 3254 2124 881 190 60 74 chr9 31273210 31273479 -110997965 - L1MA9 LINE L1 -38 6274 6010 1298 203 61 0 chr9 31273480 31273775 -110997669 - L1M4 LINE L1 -501 5683 5371 966 239 67 21 chr9 31273771 31274144 -110997300 - L1M4 LINE L1 -2557 3589 3200 * 599 169 59 15 chr9 31274153 31274289 -110997155 - L1MA8 LINE L1 -4 6287 6146 839 115 46 0 chr9 31274289 31274419 -110997025 - L1M2 LINE L1 -662 5629 5494 956 216 69 4 chr9 31274420 31274651 -110996793 - AluJb SINE Alu -3 309 64 4191 152 41 3 chr9 31274707 31275396 -110996048 - LTR62 LTR ERVK -4 715 1 1140 185 39 0 chr9 31275399 31275658 -110995786 - L1M2 LINE L1 -778 5368 5100 3445 218 58 54 chr9 31275680 31276405 -110995039 - MER21B LTR ERV1 -19 844 113 2170 152 45 36 chr9 31276405 31276826 -110994618 - MER61B LTR ERV1 0 425 1 3445 218 58 54 chr9 31276826 31276940 -110994504 - MER21B LTR ERV1 -750 113 1 2191 175 29 18 chr9 31276940 31277391 -110994053 - L1M2 LINE L1 -1042 5104 4649 1018 181 0 36 chr9 31277377 31277570 -110993874 + L1MA9 LINE L1 5608 5793 -519 * 2676 152 57 0 chr9 31277625 31278133 -110993311 + L1MA9 LINE L1 5776 6312 0 4930 230 38 60 chr9 31278136 31279256 -110992188 + L1MD1 LINE L1 3202 4345 -1897 1593 125 34 19 chr9 31279256 31279520 -110991924 + AluY SINE Alu 39 306 -5 4930 230 38 60 chr9 31279520 31281466 -110989978 + L1MD1 LINE L1 4345 6231 -11 1923 204 114 14 chr9 31281651 31282088 -110989356 - MLT1D LTR MaLR -3 502 22 2091 78 0 17 chr9 31283441 31283736 -110987708 + AluY SINE Alu 21 310 -1 22 0 0 0 chr9 31284047 31284069 -110987375 + AT_rich Low_complexity Low_complexity 1 22 0 2233 48 41 7 chr9 31284251 31284542 -110986902 - AluY SINE Alu -10 301 1 189 147 0 0 chr9 31285084 31285118 -110986326 + (CATATA)n Simple_repeat Simple_repeat 3 36 0 211 423 0 10 chr9 31285688 31285792 -110985652 + L3 LINE CR1 1462 1564 -13 5429 123 25 1 chr9 31286043 31287158 -110984286 + L1PA16 LINE L1 5021 6157 -9 23 54 0 0 chr9 31287163 31287200 -110984244 + AT_rich Low_complexity Low_complexity 1 37 0 21 36 0 0 chr9 31288508 31288536 -110982908 + AT_rich Low_complexity Low_complexity 1 28 0 887 187 126 16 chr9 31289471 31289717 -110981727 - ORSL DNA AcHobo -1 274 2 523 285 25 43 chr9 31291166 31291443 -110980001 - L1M4 LINE L1 -1992 4154 3883 254 253 55 22 chr9 31291672 31291763 -110979681 - L1MC4 LINE L1 -26 8016 7923 2709 181 19 91 chr9 31292094 31292811 -110978633 - L1MD2 LINE L1 -10 6349 5684 294 29 0 0 chr9 31292811 31292846 -110978598 + (TG)n Simple_repeat Simple_repeat 1 35 0 214 273 118 50 chr9 31292857 31293018 -110978426 + L2 LINE L2 1609 1780 -1534 246 326 76 42 chr9 31293427 31293571 -110977873 - MIR SINE MIR -65 197 49 370 292 28 101 chr9 31296533 31296711 -110974733 + MIR SINE MIR 70 234 -28 319 340 26 21 chr9 31297292 31297483 -110973961 - MLT1L LTR MaLR -10 605 414 183 80 0 0 chr9 31297566 31297591 -110973853 + (T)n Simple_repeat Simple_repeat 1 25 0 34 42 0 0 chr9 31299238 31299286 -110972158 + AT_rich Low_complexity Low_complexity 1 48 0 787 179 0 15 chr9 31299286 31299420 -110972024 - FLAM_C SINE Alu 0 133 2 21 0 0 0 chr9 31299903 31299924 -110971520 + AT_rich Low_complexity Low_complexity 1 21 0 247 333 142 7 chr9 31300021 31300162 -110971282 + MIR SINE MIR 21 180 -82 21 0 0 0 chr9 31300975 31300996 -110970448 + AT_rich Low_complexity Low_complexity 1 21 0 373 299 75 63 chr9 31301052 31301306 -110970138 + L3b LINE CR1 1109 1365 -218 250 287 73 12 chr9 31301984 31302148 -110969296 - L1MC/D LINE L1 -1907 5901 5728 967 71 49 13 chr9 31303170 31303395 -110968049 + CT-rich Low_complexity Low_complexity 1 233 0 552 240 175 39 chr9 31304116 31304424 -110967020 + Charlie2 DNA MER1_type 72 421 -2441 1368 228 11 39 chr9 31304467 31304826 -110966618 - L1MA10 LINE L1 -7 6327 5979 324 235 0 82 chr9 31304834 31304932 -110966512 - L1MC4 LINE L1 -1339 6703 6614 364 182 26 0 chr9 31304954 31305031 -110966413 - L1MA10 LINE L1 -384 5928 5850 1129 246 41 15 chr9 31305044 31305758 -110965686 + L1M1 LINE L1 3029 3770 -3795 725 149 101 120 chr9 31305850 31306058 -110965386 + MER20 DNA MER1_type 16 219 0 839 320 21 42 chr9 31306274 31306652 -110964792 + L2 LINE L2 2943 3312 -1 342 337 63 6 chr9 31307563 31307738 -110963706 + MIR SINE MIR 1 185 -77 736 87 96 0 chr9 31307840 31307955 -110963489 - L1PA10 LINE L1 -4 6164 6039 195 42 0 0 chr9 31308665 31308689 -110962755 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 29 70 0 0 chr9 31310717 31310774 -110960670 + AT_rich Low_complexity Low_complexity 1 57 0 750 303 70 34 chr9 31311731 31312619 -110958825 + L1MEc LINE L1 837 1756 -4640 5256 80 1 3 chr9 31312709 31313421 -110958023 - L1PA7 LINE L1 -1445 4701 3991 6709 64 4 19 chr9 31313422 31314880 -110956564 + L1PA7 LINE L1 4700 6146 -8 904 161 13 7 chr9 31314895 31315050 -110956394 + AluSg/x SINE Alu 153 308 -4 1040 284 59 59 chr9 31315086 31316078 -110955366 + L1MEc LINE L1 1908 2877 -3338 4933 177 28 32 chr9 31316081 31317468 -110953976 - L1MA9 LINE L1 -35 6277 4903 498 197 102 7 chr9 31317589 31317726 -110953718 - L1MA9 LINE L1 -1252 4894 4745 6610 110 25 30 chr9 31317740 31318803 -110952641 - L1MA1 LINE L1 -4 6298 5243 2194 127 21 29 chr9 31318803 31319181 -110952263 - THE1C LTR MaLR 0 375 1 6610 110 25 30 chr9 31319181 31319247 -110952197 - L1MA1 LINE L1 -1059 5243 5178 929 202 299 8 chr9 31319249 31319610 -110951834 - L1MA9 LINE L1 -1386 4760 4295 660 253 64 7 chr9 31319614 31319895 -110951549 + L1MEc LINE L1 2873 3169 -3046 1427 217 18 0 chr9 31320291 31320567 -110950877 + AluJo SINE Alu 2 282 -30 1940 143 11 49 chr9 31320723 31321073 -110950371 - MER1B DNA MER1_type 0 337 1 377 338 43 0 chr9 31322913 31323052 -110948392 + MIR SINE MIR 111 255 -7 2013 108 7 0 chr9 31324042 31324321 -110947123 + AluSp SINE Alu 1 281 -32 189 0 0 0 chr9 31324321 31324342 -110947102 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 2542 188 5 68 chr9 31326217 31326808 -110944636 + MER41C LTR ERV1 1 554 0 1071 287 39 48 chr9 31327178 31327238 -110944206 - LTR16B LTR ERVL 0 464 405 1877 149 0 17 chr9 31327238 31327540 -110943904 + AluJb SINE Alu 1 297 -15 1071 287 39 48 chr9 31327540 31327942 -110943502 - LTR16B LTR ERVL -59 405 6 644 185 34 7 chr9 31328400 31328546 -110942898 - L1MA1 LINE L1 -1479 4667 4518 237 251 74 37 chr9 31328558 31328721 -110942723 - L1MC5 LINE L1 -65 7896 7728 248 385 83 15 chr9 31328926 31329131 -110942313 + MIR SINE MIR 11 229 -33 4035 203 52 41 chr9 31329499 31330054 -110941390 + L1MB7 LINE L1 4615 5162 -1022 1949 162 65 29 chr9 31330054 31330467 -110940977 + MSTA LTR MaLR 1 428 0 4035 203 52 41 chr9 31330467 31331453 -110939991 + L1MB7 LINE L1 5162 6177 -7 655 268 56 9 chr9 31331746 31331959 -110939485 - MER58A DNA MER1_type -1 223 1 1917 117 3 3 chr9 31332245 31332550 -110938894 - AluSx SINE Alu 0 305 1 22 0 0 0 chr9 31333036 31333058 -110938386 + AT_rich Low_complexity Low_complexity 1 22 0 345 343 191 22 chr9 31334652 31334980 -110936464 + L2 LINE L2 2764 3035 -278 246 105 0 0 chr9 31334980 31335018 -110936426 + (TG)n Simple_repeat Simple_repeat 1 38 0 345 343 191 22 chr9 31335018 31335160 -110936284 + L2 LINE L2 3035 3313 0 489 346 71 31 chr9 31335451 31335999 -110935445 + L2 LINE L2 2660 3232 -81 238 250 0 15 chr9 31336013 31336081 -110935363 + MIR SINE MIR 94 160 -102 42739 40 1 30 chr9 31336083 31342427 -110929017 + L1PA3 LINE L1 2 6155 0 290 304 0 0 chr9 31342428 31342520 -110928924 + MIR SINE MIR 157 248 -14 276 30 0 0 chr9 31342545 31342578 -110928866 + (CAT)n Simple_repeat Simple_repeat 2 34 0 730 276 18 9 chr9 31342668 31342885 -110928559 - MLT1G LTR MaLR -6 584 366 273 29 0 0 chr9 31343830 31343864 -110927580 + (CA)n Simple_repeat Simple_repeat 1 34 0 356 281 154 23 chr9 31343891 31344112 -110927332 + L1ME4a LINE L1 5831 6080 -41 5930 153 12 2 chr9 31344130 31345695 -110925749 - L1PB1 LINE L1 -7 6144 4564 7825 163 11 4 chr9 31345702 31346381 -110925063 - L1PA13 LINE L1 0 6163 5490 1992 140 10 0 chr9 31346381 31346673 -110924771 - AluSx SINE Alu -17 295 1 7825 163 11 4 chr9 31346673 31348226 -110923218 - L1PA13 LINE L1 -673 5490 3908 857 321 90 24 chr9 31348244 31348668 -110922776 + L1PA13 LINE L1 772 1258 -5529 5275 191 17 12 chr9 31348671 31350306 -110921138 + L1PA13 LINE L1 1396 3065 -3732 6571 124 41 49 chr9 31351416 31352653 -110918791 - Tigger3b DNA MER2_type -4 1227 1 21 57 0 0 chr9 31352714 31352749 -110918695 + AT_rich Low_complexity Low_complexity 1 35 0 318 314 13 6 chr9 31352766 31352787 -110918657 - L1MA10 LINE L1 0 6334 6314 1597 225 40 14 chr9 31352787 31353210 -110918234 - L1ME1 LINE L1 -12 6154 5721 863 293 61 32 chr9 31353306 31353780 -110917664 - L1MCc LINE L1 -5912 511 24 1000 294 79 45 chr9 31353841 31354936 -110916508 - L1MCc LINE L1 -4824 2117 1061 414 0 0 0 chr9 31354936 31354982 -110916462 + (TG)n Simple_repeat Simple_repeat 2 47 0 1620 132 4 23 chr9 31354983 31355241 -110916203 - AluSq SINE Alu -16 297 45 1000 294 79 45 chr9 31355241 31355417 -110916027 - L1MCc LINE L1 -5879 1062 802 10509 227 21 32 chr9 31355426 31358971 -110912473 - L1PA12 LINE L1 -2984 4600 9 246 308 0 8 chr9 31359526 31359646 -110911798 + L1M4 LINE L1 2593 2711 -3435 566 286 108 9 chr9 31361902 31362115 -110909329 - MIR SINE MIR 0 262 29 212 271 0 0 chr9 31362194 31362253 -110909191 + (TAA)n Simple_repeat Simple_repeat 2 60 0 1340 215 13 80 chr9 31362313 31362703 -110908741 + MLT1A2 LTR MaLR 4 367 -7 261 365 111 17 chr9 31362705 31362886 -110908558 - MIR SINE MIR -61 201 4 21 36 0 0 chr9 31363347 31363375 -110908069 + AT_rich Low_complexity Low_complexity 1 28 0 3305 219 47 40 chr9 31363646 31363874 -110907570 - L1MB8 LINE L1 0 6178 5953 2075 105 0 51 chr9 31363874 31364187 -110907257 - AluSx SINE Alu -12 300 4 3305 219 47 40 chr9 31364187 31364877 -110906567 - L1MB8 LINE L1 -225 5953 5254 1916 239 53 7 chr9 31364889 31365437 -110906007 - L1MB8 LINE L1 -1835 4311 3739 320 209 26 52 chr9 31365759 31365874 -110905570 + CT-rich Low_complexity Low_complexity 6 117 0 288 53 0 0 chr9 31365885 31365923 -110905521 + (TG)n Simple_repeat Simple_repeat 1 38 0 5452 46 1 4 chr9 31366811 31367489 -110903955 - L1PA7 LINE L1 -2 6152 5477 2618 96 96 5 chr9 31367767 31368130 -110903314 + MLT2A1 LTR ERVL 1 406 -38 621 0 0 0 chr9 31368130 31368199 -110903245 + (TCTA)n Simple_repeat Simple_repeat 4 72 0 2618 96 96 5 chr9 31368199 31368242 -110903202 + MLT2A1 LTR ERVL 406 444 0 194 327 71 26 chr9 31371086 31371199 -110900245 - L2 LINE L2 -211 3061 2944 287 233 0 41 chr9 31371333 31371406 -110900038 + L1M4 LINE L1 2677 2746 -3400 1346 224 21 25 chr9 31371411 31371737 -110899707 - MLT1A1 LTR MaLR -40 325 1 2009 257 84 33 chr9 31371854 31372408 -110899036 - L1ME1 LINE L1 -1 6976 6452 1950 170 3 26 chr9 31372408 31372750 -110898694 - MER1B DNA MER1_type -3 334 1 2009 257 84 33 chr9 31372750 31373820 -110897624 - L1ME1 LINE L1 -525 6452 5127 1827 169 23 0 chr9 31374696 31375039 -110896405 - L1MB1 LINE L1 0 6168 5818 461 127 0 0 chr9 31375040 31375111 -110896333 + L1MB1 LINE L1 5743 5813 -355 667 257 69 31 chr9 31375146 31375407 -110896037 - L1ME1 LINE L1 -4788 2171 1901 309 288 177 32 chr9 31375745 31376000 -110895444 - L1ME1 LINE L1 -6309 546 2 3226 239 60 34 chr9 31376182 31377712 -110893732 + L1MD2 LINE L1 4787 6349 -10 21 36 0 0 chr9 31377744 31377772 -110893672 + AT_rich Low_complexity Low_complexity 1 28 0 341 314 73 47 chr9 31377947 31378231 -110893213 - L1ME4a LINE L1 -248 5873 5575 2039 120 3 3 chr9 31378231 31378522 -110892922 + AluSx SINE Alu 1 291 -21 341 314 73 47 chr9 31378522 31378619 -110892825 - L1ME4a LINE L1 -546 5575 5482 26 0 0 0 chr9 31378696 31378722 -110892722 + AT_rich Low_complexity Low_complexity 1 26 0 5307 76 1 37 chr9 31379726 31380485 -110890959 + L1PA8 LINE L1 5437 6168 -4 200 206 0 0 chr9 31380764 31380798 -110890646 + polypurine Low_complexity Low_complexity 1 34 0 21 0 0 0 chr9 31381458 31381479 -110889965 + AT_rich Low_complexity Low_complexity 1 21 0 293 340 11 11 chr9 31381684 31381778 -110889666 + L2 LINE L2 3169 3262 -10 235 311 75 19 chr9 31381868 31381974 -110889470 - L3 LINE CR1 -82 1495 1384 337 313 52 0 chr9 31382265 31382380 -110889064 - MIR SINE MIR 0 262 142 33 73 0 0 chr9 31383130 31383198 -110888246 + AT_rich Low_complexity Low_complexity 1 68 0 24 0 0 0 chr9 31383456 31383480 -110887964 + AT_rich Low_complexity Low_complexity 1 24 0 30 45 0 0 chr9 31383539 31383583 -110887861 + AT_rich Low_complexity Low_complexity 1 44 0 468 333 135 0 chr9 31383856 31384078 -110887366 - MIR SINE MIR 0 262 11 324 306 9 9 chr9 31384111 31384222 -110887222 - MIR SINE MIR -30 232 122 198 316 103 43 chr9 31385307 31385424 -110886020 + MIR SINE MIR 68 191 -71 187 261 22 0 chr9 31385615 31385661 -110885783 - L2 LINE L2 -1 3271 3225 28 61 0 0 chr9 31385789 31385838 -110885606 + AT_rich Low_complexity Low_complexity 1 49 0 380 306 42 60 chr9 31385997 31386213 -110885231 + L2 LINE L2 3102 3313 0 278 330 32 0 chr9 31386277 31386371 -110885073 + L2 LINE L2 3201 3297 -16 23 54 0 0 chr9 31386977 31387014 -110884430 + AT_rich Low_complexity Low_complexity 1 37 0 282 194 133 10 chr9 31387737 31387835 -110883609 - MER69 DNA AcHobo -83 2443 2334 1356 162 35 69 chr9 31387916 31388262 -110883182 + L1MA7 LINE L1 5957 6290 -1 3859 141 47 36 chr9 31388893 31389596 -110881848 - MER50 LTR ERV1 -23 711 1 2080 61 87 0 chr9 31390940 31391217 -110880227 - AluY SINE Alu -10 301 1 281 180 30 40 chr9 31392266 31392366 -110879078 + (TATATG)n Simple_repeat Simple_repeat 4 102 0 225 103 51 0 chr9 31392415 31392454 -110878990 + L1MC4 LINE L1 6663 6703 -1339 * 270 133 0 0 chr9 31392426 31392471 -110878973 - L1MC4 LINE L1 -1339 6703 6659 23 68 0 0 chr9 31392675 31392719 -110878725 + AT_rich Low_complexity Low_complexity 1 44 0 22 0 0 0 chr9 31392995 31393017 -110878427 + AT_rich Low_complexity Low_complexity 1 22 0 301 356 64 4 chr9 31393220 31393487 -110877957 + L1MCc LINE L1 1253 1535 -4888 582 311 60 34 chr9 31393691 31394228 -110877216 + L1MCc LINE L1 1996 2546 -4576 520 288 88 15 chr9 31394322 31394527 -110876917 + L1MEc LINE L1 45 264 -6132 308 298 11 0 chr9 31394797 31394891 -110876553 + ERVL-B1 LTR ERVL 316 410 -5354 2529 99 14 14 chr9 31394891 31395255 -110876189 - THE1B LTR MaLR 0 364 1 8670 137 48 45 chr9 31395255 31396829 -110874615 - THE1B-int LTR MaLR 0 1580 1 2423 117 19 14 chr9 31396829 31397189 -110874255 - THE1B LTR MaLR 0 364 3 3302 212 31 18 chr9 31397189 31397868 -110873576 + ERVL-B1 LTR ERVL 404 1091 -4673 * 5163 182 16 35 chr9 31397860 31398005 -110873439 + ERVL-B1 LTR ERVL 4729 4875 -889 2344 92 0 0 chr9 31398005 31398308 -110873136 - AluY SINE Alu -8 303 1 5163 182 16 35 chr9 31398308 31399204 -110872240 + ERVL-B1 LTR ERVL 4875 5750 -14 987 223 40 92 chr9 31399211 31399583 -110871861 + MLT2B1 LTR ERVL 1 391 -23 333 0 0 0 chr9 31399583 31399620 -110871824 + (CA)n Simple_repeat Simple_repeat 2 38 0 252 0 0 0 chr9 31399619 31399647 -110871797 + (GA)n Simple_repeat Simple_repeat 2 29 0 * 987 223 40 92 chr9 31399620 31399702 -110871742 + MLT2B1 LTR ERVL 391 412 -2 1001 217 37 94 chr9 31399702 31400052 -110871392 + L1MB7 LINE L1 5739 6068 -116 569 214 8 8 chr9 31400056 31400173 -110871271 - LTR28 LTR ERV1 -4 1016 900 774 211 94 79 chr9 31400213 31400890 -110870554 - LTR1 LTR ERV1 -39 981 1 515 204 0 0 chr9 31400892 31401005 -110870439 + L1MB8 LINE L1 6065 6177 -1 859 259 56 26 chr9 31401050 31401390 -110870054 + L1MEc LINE L1 1701 2050 -4346 1322 252 86 49 chr9 31401397 31401470 -110869974 + Charlie5 DNA MER1_type 1 63 -662 2362 119 23 0 chr9 31401470 31401823 -110869621 + L1PA14 LINE L1 5799 6159 -2 1322 252 86 49 chr9 31401823 31402356 -110869088 + Charlie5 DNA MER1_type 63 622 -103 2643 237 53 29 chr9 31402363 31403287 -110868157 + Charlie5 DNA MER1_type 1101 2046 -566 2457 126 14 12 chr9 31403302 31403544 -110867900 - L1MA2 LINE L1 0 6304 6059 1958 135 7 0 chr9 31403544 31403840 -110867604 - AluSg SINE Alu -12 298 1 2457 126 14 12 chr9 31403840 31404017 -110867427 - L1MA2 LINE L1 -245 6059 5884 289 130 22 0 chr9 31404017 31404063 -110867381 - Alu SINE Alu -253 49 3 1025 225 36 41 chr9 31404064 31404451 -110866993 + Charlie5 DNA MER1_type 2239 2623 0 578 271 65 31 chr9 31404688 31404917 -110866527 + L1MEc LINE L1 110 346 -6050 538 276 79 20 chr9 31404925 31405128 -110866316 - L1ME LINE L1 -655 5509 5295 239 200 18 0 chr9 31405131 31405186 -110866258 + (TA)n Simple_repeat Simple_repeat 1 56 0 3809 238 78 25 chr9 31405186 31405438 -110866006 - L1ME LINE L1 -874 5272 5035 2401 243 14 4 chr9 31405438 31405994 -110865450 - MER68 LTR ERV1 0 562 1 3809 238 78 25 chr9 31405994 31407135 -110864309 - L1ME LINE L1 -1111 5035 3805 242 344 42 0 chr9 31407506 31407602 -110863842 + L2 LINE L2 3214 3313 0 680 258 144 11 chr9 31408564 31408828 -110862616 + MER46C DNA MER2_type 14 312 -26 2010 128 0 0 chr9 31408830 31409156 -110862288 - AluSx SINE Alu 0 326 1 283 273 99 33 chr9 31409257 31409378 -110862066 - MIR SINE MIR -78 184 56 303 28 0 0 chr9 31410629 31410665 -110860779 + (TA)n Simple_repeat Simple_repeat 2 37 0 725 183 8 0 chr9 31410665 31410796 -110860648 - FLAM_A SINE Alu -3 139 8 448 297 167 45 chr9 31410798 31411255 -110860189 + L2 LINE L2 1943 2343 -971 402 114 14 0 chr9 31411255 31411325 -110860119 - L1MA8 LINE L1 -4 6287 6217 2006 80 0 0 chr9 31411326 31411577 -110859867 + AluSx SINE Alu 1 251 -61 448 297 167 45 chr9 31411577 31411608 -110859836 + L2 LINE L2 2342 2493 -821 1324 176 30 20 chr9 31411645 31411946 -110859498 - L1MB5 LINE L1 -3 6669 6366 2173 233 35 18 chr9 31411966 31412648 -110858796 - L1MB5 LINE L1 -797 5847 5154 4604 275 77 31 chr9 31412653 31416266 -110855178 - L1MB5 LINE L1 -1639 5005 1085 1975 141 13 0 chr9 31416266 31416564 -110854880 - AluY SINE Alu -9 302 1 4604 275 77 31 chr9 31416564 31417652 -110853792 - L1MB5 LINE L1 -5559 1085 48 263 413 62 23 chr9 31417736 31417995 -110853449 + L2 LINE L2 2566 2834 -480 278 240 0 0 chr9 31418198 31418248 -110853196 + Tigger3(Golem) DNA MER2_type 19 68 -2961 3623 166 34 7 chr9 31418253 31418934 -110852510 - HSMAR2 DNA Mariner 0 1302 604 1419 237 37 5 chr9 31418934 31419200 -110852244 + L1PA15 LINE L1 2180 2463 -3683 303 28 0 0 chr9 31419200 31419236 -110852208 + (TG)n Simple_repeat Simple_repeat 1 36 0 1419 237 37 5 chr9 31419236 31419345 -110852099 + L1PA15 LINE L1 2463 2567 -3579 2055 147 3 12 chr9 31419354 31419694 -110851750 - MER61B LTR ERV1 -29 396 60 10043 219 16 7 chr9 31419717 31422693 -110848751 + L1PA15 LINE L1 2837 5833 -332 24 0 0 0 chr9 31422716 31422740 -110848704 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr9 31422787 31422811 -110848633 + AT_rich Low_complexity Low_complexity 1 24 0 217 349 68 15 chr9 31422855 31422987 -110848457 + MIR SINE MIR 74 212 -50 275 320 117 46 chr9 31424684 31424965 -110846479 + L2 LINE L2 1813 2113 -1201 206 128 26 0 chr9 31425099 31425138 -110846306 + (TG)n Simple_repeat Simple_repeat 1 40 0 232 296 184 0 chr9 31425148 31425246 -110846198 + L2 LINE L2 2261 2376 -938 263 309 53 126 chr9 31425491 31425753 -110845691 - L2 LINE L2 -551 2763 2521 598 130 0 17 chr9 31427118 31427233 -110844211 + (TTCC)n Simple_repeat Simple_repeat 4 116 0 24 32 0 0 chr9 31427400 31427431 -110844013 + AT_rich Low_complexity Low_complexity 1 31 0 183 314 76 67 chr9 31427712 31427817 -110843627 + MER5B DNA MER1_type 23 128 -50 * 222 379 43 0 chr9 31427725 31427841 -110843603 - MER5A DNA MER1_type -35 154 34 226 73 49 0 chr9 31428345 31428386 -110843058 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 4761 169 68 20 chr9 31428515 31429523 -110841921 - L1MC2 LINE L1 -9 6335 5279 2754 150 9 0 chr9 31430881 31431340 -110840104 - L1PA16 LINE L1 0 6166 5704 1191 177 4 1 chr9 31431342 31431575 -110839869 + L1PA16 LINE L1 5459 5695 -473 1253 283 92 40 chr9 31431600 31432369 -110839075 + L2 LINE L2 2367 3168 -145 4151 86 0 4 chr9 31432784 31433340 -110838104 + MER41A LTR ERV1 1 554 0 21384 152 80 52 chr9 31433424 31434711 -110836733 + MER41A-int LTR ERV1 1 1251 -4695 1990 131 3 10 chr9 31434711 31435009 -110836435 - AluSx SINE Alu -15 297 2 21384 152 80 52 chr9 31435009 31435115 -110836329 + MER41A-int LTR ERV1 1251 1353 -4593 1868 137 29 35 chr9 31435115 31435429 -110836015 + AluSx SINE Alu 1 312 0 21384 152 80 52 chr9 31435429 31439735 -110831709 + MER41A-int LTR ERV1 1353 5942 -4 4080 89 4 0 chr9 31439737 31440289 -110831155 + MER41A LTR ERV1 1 554 0 27 49 0 0 chr9 31440656 31440697 -110830747 + AT_rich Low_complexity Low_complexity 1 41 0 1900 41 0 0 chr9 31440820 31441041 -110830403 + AluY SINE Alu 86 306 -5 1110 209 171 84 chr9 31442002 31442430 -110829014 + MLT1D LTR MaLR 1 467 0 611 172 7 86 chr9 31443779 31443930 -110827514 + MER97c DNA MER1_type? 40 178 -912 531 263 39 52 chr9 31444055 31444287 -110827157 - L1ME2 LINE L1 -1 6163 5935 34 55 0 0 chr9 31444529 31444584 -110826860 + AT_rich Low_complexity Low_complexity 1 55 0 1232 255 107 41 chr9 31445404 31445443 -110826001 - MLT2B1 LTR ERVL 0 520 485 559 48 12 12 chr9 31445443 31445527 -110825917 + (TAGA)n Simple_repeat Simple_repeat 3 86 0 1232 255 107 41 chr9 31445527 31445973 -110825471 - MLT2B1 LTR ERVL -35 485 3 288 260 55 0 chr9 31445981 31446054 -110825390 + MER103 DNA DNA 28 104 -62 1974 123 0 4 chr9 31446517 31446793 -110824651 - AluSx SINE Alu -35 277 3 1603 161 122 6 chr9 31447368 31447704 -110823740 + THE1C LTR MaLR 1 375 0 8840 143 11 54 chr9 31447706 31449354 -110822090 + THE1C-int LTR MaLR 3 1580 0 1765 191 38 16 chr9 31449354 31449721 -110821723 + THE1C LTR MaLR 1 375 0 292 299 80 58 chr9 31450101 31450238 -110821206 - MIR3 SINE MIR -2 206 67 342 184 40 40 chr9 31450971 31451047 -110820397 - MIR SINE MIR -106 156 81 23 33 0 0 chr9 31451240 31451270 -110820174 + AT_rich Low_complexity Low_complexity 1 30 0 462 273 61 71 chr9 31451278 31451670 -110819774 + L1ME4a LINE L1 5638 6025 -96 1913 126 34 7 chr9 31452126 31452419 -110819025 - AluSx SINE Alu -11 301 1 21 36 0 0 chr9 31453510 31453538 -110817906 + AT_rich Low_complexity Low_complexity 1 28 0 320 369 37 5 chr9 31454791 31454978 -110816466 + MIR SINE MIR 64 256 -6 467 321 42 7 chr9 31455132 31455327 -110816117 - MIR3 SINE MIR -1 207 1 2149 202 92 25 chr9 31456807 31457331 -110814113 + MER89 LTR ERV1 1 559 0 1906 127 69 0 chr9 31458079 31458370 -110813074 + AluSx SINE Alu 1 311 -1 267 309 139 46 chr9 31459589 31459755 -110811689 - MIR3 SINE MIR -64 144 2 275 329 12 0 chr9 31459864 31459946 -110811498 - L2 LINE L2 0 3313 3231 28 71 0 0 chr9 31461741 31461797 -110809647 + AT_rich Low_complexity Low_complexity 1 56 0 1205 124 46 0 chr9 31462068 31462262 -110809182 + L1MA2 LINE L1 6102 6304 0 21 36 0 0 chr9 31462397 31462425 -110809019 + AT_rich Low_complexity Low_complexity 1 28 0 686 253 3 140 chr9 31462628 31462920 -110808524 + L1MDa LINE L1 17 268 -6272 739 247 12 0 chr9 31462922 31463084 -110808360 + L1MC1 LINE L1 100 263 -6279 1939 259 54 39 chr9 31463118 31463558 -110807886 + L1MC1 LINE L1 347 802 -5740 180 0 0 0 chr9 31463558 31463578 -110807866 + (CA)n Simple_repeat Simple_repeat 1 20 0 1939 259 54 39 chr9 31463578 31463786 -110807658 + L1MC1 LINE L1 802 1005 -5537 1101 227 99 16 chr9 31463784 31464167 -110807277 + L1MC1 LINE L1 1682 2096 -4550 * 304 209 0 12 chr9 31464196 31464282 -110807162 + L1MC1 LINE L1 2231 2315 -4331 2041 237 53 33 chr9 31464336 31465187 -110806257 + L1MC1 LINE L1 2537 3418 -3226 1209 235 98 21 chr9 31465198 31465400 -110806044 - MLT1A2 LTR MaLR -9 365 125 1337 153 133 55 chr9 31465400 31465746 -110805698 - THE1C LTR MaLR -2 373 1 1209 235 98 21 chr9 31465746 31465879 -110805565 - MLT1A2 LTR MaLR -249 125 4 939 245 203 33 chr9 31465880 31466085 -110805359 + L1MC1 LINE L1 3419 3588 -3056 592 197 14 7 chr9 31466085 31466227 -110805217 + L1MA8 LINE L1 6143 6285 -6 939 245 203 33 chr9 31466227 31466593 -110804851 + L1MC1 LINE L1 3588 4087 -2557 * 1343 209 50 0 chr9 31466591 31466893 -110804551 + L1MC1 LINE L1 5871 6187 -495 989 224 12 8 chr9 31466893 31467152 -110804292 + L1MA9 LINE L1 6015 6274 -38 * 3231 261 103 27 chr9 31467147 31468899 -110802545 + L1MD2 LINE L1 2489 4402 -2138 12523 104 14 0 chr9 31468899 31471518 -110799926 + L1PA7 LINE L1 3514 6149 -5 3231 261 103 27 chr9 31471518 31471594 -110799850 + L1MD2 LINE L1 4402 4471 -2069 1529 193 27 7 chr9 31471596 31471896 -110799548 + L1MC1 LINE L1 6406 6711 -120 2067 254 58 10 chr9 31471937 31471957 -110799487 + L1MD2 LINE L1 5633 5651 -1102 2893 185 39 7 chr9 31471957 31472567 -110798877 + L1PB4 LINE L1 5526 6155 -1 2067 254 58 10 chr9 31472567 31473201 -110798243 + L1MD2 LINE L1 5651 6558 -195 279 114 0 0 chr9 31473201 31473245 -110798199 + (CA)n Simple_repeat Simple_repeat 1 44 0 2067 254 58 10 chr9 31473245 31473436 -110798008 + L1MD2 LINE L1 6558 6739 -14 246 357 31 10 chr9 31474414 31474512 -110796932 - L2 LINE L2 -5 3267 3168 1931 188 59 10 chr9 31474526 31474931 -110796513 + MSTB1 LTR MaLR 5 429 -3 206 62 31 0 chr9 31475425 31475457 -110795987 + (TA)n Simple_repeat Simple_repeat 2 34 0 207 139 0 0 chr9 31475572 31475608 -110795836 + (CAATA)n Simple_repeat Simple_repeat 2 37 0 21 36 0 0 chr9 31476144 31476172 -110795272 + AT_rich Low_complexity Low_complexity 1 28 0 1456 174 85 26 chr9 31477950 31478290 -110793154 + MER46B DNA MER2_type 1 235 -1 199 271 254 51 chr9 31479593 31479711 -110791733 + MIR3 SINE MIR 60 201 -7 2312 240 96 50 chr9 31479961 31480471 -110790973 + L1ME1 LINE L1 4645 5130 -1036 2059 129 13 0 chr9 31480471 31480774 -110790670 + AluSg SINE Alu 1 307 -3 2312 240 96 50 chr9 31480774 31481723 -110789721 + L1ME1 LINE L1 5130 6162 -4 25 75 0 0 chr9 31481782 31481835 -110789609 + AT_rich Low_complexity Low_complexity 1 53 0 328 304 97 51 chr9 31483426 31483663 -110787781 + HAL1 LINE L1 803 1050 -1457 21 0 0 0 chr9 31483681 31483702 -110787742 + AT_rich Low_complexity Low_complexity 1 21 0 2020 227 38 22 chr9 31483980 31484477 -110786967 + MLT1D LTR MaLR 1 505 0 267 381 8 8 chr9 31484642 31484760 -110786684 - L2 LINE L2 -17 3296 3179 196 256 0 0 chr9 31488155 31488194 -110783250 + MIR SINE MIR 146 184 -78 1744 154 18 0 chr9 31488223 31488386 -110783058 - AluJo SINE Alu -27 285 113 183 100 0 0 chr9 31488386 31488416 -110783028 + (TG)n Simple_repeat Simple_repeat 1 30 0 1744 154 18 0 chr9 31488416 31488532 -110782912 - AluJo SINE Alu -199 113 1 26 50 0 0 chr9 31488631 31488671 -110782773 + AT_rich Low_complexity Low_complexity 1 40 0 232 278 93 9 chr9 31489780 31489888 -110781556 - MER112 DNA MER1_type -78 182 66 500 248 78 14 chr9 31490258 31490399 -110781045 + L1MA6 LINE L1 469 618 -6871 * 5959 208 46 4 chr9 31490394 31491801 -110779643 - L1MA4 LINE L1 -1832 4314 2848 4874 183 35 20 chr9 31491799 31493773 -110777671 + L1MA4 LINE L1 4298 6299 -1 * 909 298 25 63 chr9 31493799 31494242 -110777202 + L1MA6 LINE L1 617 1042 -6447 12683 206 76 32 chr9 31494306 31499797 -110771647 + L1MA6 LINE L1 2008 7718 -1 214 325 52 93 chr9 31500116 31500156 -110771288 - MIR SINE MIR -28 234 194 2154 92 17 17 chr9 31500156 31500450 -110770994 + AluSg SINE Alu 3 296 -14 214 325 52 93 chr9 31500450 31500603 -110770841 - MIR SINE MIR -68 194 49 586 317 102 40 chr9 31501025 31501350 -110770094 + LTR16A LTR ERVL 16 360 -90 1846 215 67 33 chr9 31501732 31502212 -110769232 + MLT1D LTR MaLR 1 496 -9 243 0 0 0 chr9 31503252 31503279 -110768165 + (CA)n Simple_repeat Simple_repeat 2 28 0 21 71 0 0 chr9 31503714 31503756 -110767688 + AT_rich Low_complexity Low_complexity 1 42 0 1356 246 78 10 chr9 31505836 31506235 -110765209 + L1MC4a LINE L1 7087 7512 -296 * 5679 103 8 17 chr9 31506225 31506752 -110764692 + L1PA13 LINE L1 5302 5821 -342 2256 110 0 0 chr9 31506752 31507051 -110764393 + AluY SINE Alu 3 301 -10 5679 103 8 17 chr9 31507051 31507392 -110764052 + L1PA13 LINE L1 5821 6163 0 1232 213 0 27 chr9 31507423 31507686 -110763758 + AluJb SINE Alu 1 256 -56 372 133 0 0 chr9 31507706 31507766 -110763678 + (GGAA)n Simple_repeat Simple_repeat 3 62 0 2182 111 0 0 chr9 31507996 31508294 -110763150 + AluY SINE Alu 1 298 -13 317 0 0 65 chr9 31508447 31508493 -110762951 + (A)n Simple_repeat Simple_repeat 1 43 0 1926 60 38 19 chr9 31509229 31509496 -110761948 + HERVK14 LTR ERVK 5488 5759 -186 276 249 0 0 chr9 31509496 31509558 -110761886 + MER41C LTR ERV1 1 53 -501 678 94 94 34 chr9 31509558 31509675 -110761769 + HERVK14 LTR ERVK 5822 5945 0 1802 97 32 179 chr9 31509678 31510081 -110761363 + LTR14B LTR ERVK 1 608 0 2622 179 121 42 chr9 31510082 31510341 -110761103 - L1MA7 LINE L1 -257 6034 5797 1930 133 7 23 chr9 31510341 31510650 -110760794 - AluSp SINE Alu -9 304 1 2622 179 121 42 chr9 31510650 31511568 -110759876 - L1MA7 LINE L1 -494 5797 4761 258 81 0 0 chr9 31511693 31511730 -110759714 + (TC)n Simple_repeat Simple_repeat 2 38 0 * 348 188 0 0 chr9 31511729 31511798 -110759646 + (TATATG)n Simple_repeat Simple_repeat 4 72 0 655 191 13 19 chr9 31511806 31511963 -110759481 - L1M3 LINE L1 -709 5474 5319 2797 0 0 3 chr9 31513760 31514068 -110757376 - AluYa5 SINE Alu -4 307 1 473 272 24 8 chr9 31515049 31515174 -110756270 - MIR3 SINE MIR -7 201 75 325 366 28 0 chr9 31515424 31515566 -110755878 - MER115 DNA AcHobo -413 280 135 432 299 22 87 chr9 31515748 31516059 -110755385 - HAL1 LINE L1 -1674 833 543 351 60 0 0 chr9 31516060 31516110 -110755334 + (T)n Simple_repeat Simple_repeat 1 50 0 275 237 71 160 chr9 31516198 31516263 -110755181 - HAL1 LINE L1 -2086 421 352 2182 111 0 0 chr9 31516263 31516561 -110754883 - AluY SINE Alu -13 298 1 275 237 71 160 chr9 31516561 31516833 -110754611 - HAL1 LINE L1 -2155 352 114 182 37 37 0 chr9 31517268 31517295 -110754149 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 1995 172 25 0 chr9 31517495 31517850 -110753594 + THE1B LTR MaLR 1 364 0 9599 121 34 44 chr9 31517850 31519428 -110752016 + THE1B-int LTR MaLR 1 1563 -17 1740 147 37 0 chr9 31519428 31519701 -110751743 + THE1B LTR MaLR 82 364 0 811 228 129 0 chr9 31519740 31519933 -110751511 + MER20 DNA MER1_type 1 218 -1 5487 194 114 10 chr9 31519937 31521300 -110750144 - L1MCa LINE L1 -4805 1621 20 359 343 14 7 chr9 31521977 31522120 -110749324 - MER117 DNA MER1_type -42 155 12 960 242 84 49 chr9 31524549 31524764 -110746680 + L1M4 LINE L1 3879 4085 -2061 1421 89 80 25 chr9 31524764 31525001 -110746443 + L1PA8 LINE L1 5912 6161 -11 960 242 84 49 chr9 31525001 31525215 -110746229 + L1M4 LINE L1 4085 4323 -1823 756 243 46 23 chr9 31525220 31525483 -110745961 + L1M4 LINE L1 4670 4938 -1208 824 248 74 19 chr9 31526258 31526621 -110744823 + L1M4 LINE L1 4967 5349 -797 21 36 0 0 chr9 31526806 31526834 -110744610 + AT_rich Low_complexity Low_complexity 1 28 0 736 225 141 0 chr9 31527032 31527223 -110744221 + MSTD-int LTR MaLR 1504 1721 -14 433 215 32 0 chr9 31527234 31527327 -110744117 + MSTD LTR MaLR 1 96 -300 324 335 61 12 chr9 31528014 31528178 -110743266 + MER5B DNA MER1_type 2 173 -5 458 207 55 213 chr9 31528241 31528570 -110742874 + L1MD1 LINE L1 3 279 -6261 * 1820 262 46 17 chr9 31528558 31529280 -110742164 + L1MD1 LINE L1 2904 3646 -2894 3461 178 12 14 chr9 31529284 31529932 -110741512 - MER39B LTR ERV1 -6 647 1 1619 268 132 11 chr9 31529933 31530750 -110740694 + L1MD1 LINE L1 3645 4560 -1980 * 3181 231 106 24 chr9 31530736 31532351 -110739093 + L1MD1 LINE L1 4881 6626 -10 207 0 0 0 chr9 31532481 31532504 -110738940 + (A)n Simple_repeat Simple_repeat 1 23 0 21 0 0 0 chr9 31532912 31532933 -110738511 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr9 31533667 31533701 -110737743 + AT_rich Low_complexity Low_complexity 1 34 0 417 294 29 15 chr9 31534517 31534653 -110736791 - MIR SINE MIR -39 223 86 308 401 18 15 chr9 31536042 31536316 -110735128 - L1MC4 LINE L1 -612 7430 7156 392 222 61 10 chr9 31536583 31536682 -110734762 + MSTD LTR MaLR 1 104 -261 564 226 34 79 chr9 31536747 31537028 -110734416 + MSTD LTR MaLR 118 396 0 266 317 100 0 chr9 31537059 31537179 -110734265 - L1MC4 LINE L1 -1165 6877 6746 877 261 88 58 chr9 31537462 31537851 -110733593 + MER97c DNA MER1_type? 1 401 -689 500 62 0 0 chr9 31537851 31537915 -110733529 + THE1C LTR MaLR 4 67 -308 250 247 253 11 chr9 31537916 31538098 -110733346 + MER97c DNA MER1_type? 838 1063 -27 24 32 0 0 chr9 31538294 31538325 -110733119 + AT_rich Low_complexity Low_complexity 1 31 0 642 319 74 35 chr9 31538326 31538731 -110732713 + L1M3c LINE L1 1 421 -5720 370 177 13 0 chr9 31538946 31539025 -110732419 + L1MB1 LINE L1 4626 4705 -1441 1994 217 132 17 chr9 31539072 31539709 -110731735 - MER50 LTR ERV1 -17 717 8 3085 187 77 1 chr9 31539713 31540377 -110731067 + L1MB1 LINE L1 5459 6172 -17 288 0 0 0 chr9 31540515 31540547 -110730897 + (CA)n Simple_repeat Simple_repeat 2 33 0 556 231 155 2 chr9 31542141 31542349 -110729095 - L1 LINE L1 -1315 4831 4597 1599 66 39 18 chr9 31542455 31542711 -110728733 - HERVK14 LTR ERVK -577 5368 5038 356 41 0 0 chr9 31542711 31542760 -110728684 - HERV17 LTR ERV1 -8145 481 433 * 1083 55 28 7 chr9 31542759 31542904 -110728540 - HERV17 LTR ERV1 -3073 5553 5406 * 9803 67 26 9 chr9 31542884 31544187 -110727257 - HERV17 LTR ERV1 -4872 3754 2430 8381 77 16 7 chr9 31544173 31545312 -110726132 - HERV17 LTR ERV1 -6613 2013 865 * 5089 91 46 8 chr9 31545372 31546128 -110725316 - HERVK14 LTR ERVK -5160 785 1 1968 89 73 104 chr9 31546128 31546545 -110724899 - LTR14B LTR ERVK 0 608 1 889 143 81 81 chr9 31546547 31546805 -110724639 + L1MA7 LINE L1 6030 6287 -4 269 318 65 0 chr9 31548026 31548133 -110723311 + L2 LINE L2 3195 3308 -5 310 330 21 10 chr9 31548659 31548756 -110722688 - MIR SINE MIR -152 110 13 22 0 0 0 chr9 31549193 31549215 -110722229 + AT_rich Low_complexity Low_complexity 1 22 0 285 135 0 0 chr9 31550427 31550479 -110720965 + (GGAGA)n Simple_repeat Simple_repeat 2 53 0 2654 229 19 0 chr9 31551058 31551686 -110719758 + L1 LINE L1 3859 4498 -1648 4960 141 38 1 chr9 31551696 31553038 -110718406 + L1PA16 LINE L1 4797 6162 -4 2511 233 50 44 chr9 31554329 31554752 -110716692 - L1ME1 LINE L1 -3 6163 5731 2515 57 0 10 chr9 31554752 31555066 -110716378 - AluY SINE Alu 0 311 1 2511 233 50 44 chr9 31555066 31555467 -110715977 - L1ME1 LINE L1 -435 5731 5334 3282 249 68 31 chr9 31555493 31556149 -110715295 - L1M4 LINE L1 -512 5672 5042 240 35 0 0 chr9 31556149 31556178 -110715266 + (TG)n Simple_repeat Simple_repeat 1 29 0 3282 249 68 31 chr9 31556178 31557189 -110714255 - L1M4 LINE L1 -1142 5042 3943 274 176 0 39 chr9 31557196 31557247 -110714197 + AluSp SINE Alu 139 187 -116 428 169 22 22 chr9 31557248 31557337 -110714107 + FLAM_A SINE Alu 40 128 -14 1551 218 59 60 chr9 31557348 31557927 -110713517 - L1M4 LINE L1 -2203 3943 3366 582 281 42 0 chr9 31558011 31558249 -110713195 - L1M4 LINE L1 -2979 3167 2920 3749 120 9 3 chr9 31558259 31558825 -110712619 - L1PA12 LINE L1 0 6168 5600 2250 102 27 0 chr9 31558825 31559160 -110712284 + L1PA12 LINE L1 5260 5603 -565 552 285 6 0 chr9 31559259 31559431 -110712013 - L1M4 LINE L1 -3275 2871 2699 2069 133 3 0 chr9 31560011 31560311 -110711133 + AluSx SINE Alu 1 301 -11 249 298 40 66 chr9 31560312 31560463 -110710981 + MIR SINE MIR 47 193 -69 550 88 12 0 chr9 31560852 31560932 -110710512 - L1 LINE L1 -1561 4585 4505 1279 212 40 105 chr9 31560932 31561127 -110710317 + MLT1D LTR MaLR 102 255 -250 512 200 8 50 chr9 31561127 31561247 -110710197 + FLAM_A SINE Alu 1 115 -18 1279 212 40 105 chr9 31561247 31561481 -110709963 + MLT1D LTR MaLR 255 503 -2 28 48 0 0 chr9 31562096 31562138 -110709306 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr9 31562293 31562314 -110709130 + AT_rich Low_complexity Low_complexity 1 21 0 26 64 0 0 chr9 31562801 31562848 -110708596 + AT_rich Low_complexity Low_complexity 1 47 0 25 31 0 0 chr9 31562933 31562965 -110708479 + AT_rich Low_complexity Low_complexity 1 32 0 22 80 0 0 chr9 31563221 31563271 -110708173 + AT_rich Low_complexity Low_complexity 1 50 0 268 288 15 0 chr9 31563418 31563484 -110707960 + MIR SINE MIR 1 67 -195 3711 210 58 11 chr9 31563726 31564734 -110706710 + L1MB2 LINE L1 5111 6165 -6 335 269 138 25 chr9 31564811 31564971 -110706473 + MIR SINE MIR 85 262 0 243 206 0 0 chr9 31566587 31566650 -110704794 + L1MC4 LINE L1 6641 6703 -1339 230 296 23 0 chr9 31566650 31566738 -110704706 + (TATATG)n Simple_repeat Simple_repeat 4 93 0 1739 169 25 66 chr9 31566845 31567252 -110704192 + MLT1B LTR MaLR 1 390 0 1934 214 39 5 chr9 31567489 31567901 -110703543 + MSTB LTR MaLR 1 426 0 6057 215 24 53 chr9 31567901 31568951 -110702493 + MSTB-int LTR MaLR 1 1001 -650 1818 44 4 0 chr9 31568951 31569177 -110702267 + L1PA5 LINE L1 5926 6154 0 6057 215 24 53 chr9 31569177 31569519 -110701925 + MSTB-int LTR MaLR 1001 1352 -299 350 291 73 0 chr9 31569629 31569739 -110701705 - MIR SINE MIR -108 154 37 204 329 26 13 chr9 31569868 31569944 -110701500 + L3 LINE CR1 1500 1576 -1 198 165 35 26 chr9 31570464 31570579 -110700865 + (TATAA)n Simple_repeat Simple_repeat 2 117 0 1573 204 32 26 chr9 31570682 31571059 -110700385 + L1PA16 LINE L1 5772 6150 -16 45 45 0 0 chr9 31571322 31571388 -110700056 + AT_rich Low_complexity Low_complexity 1 66 0 231 342 29 98 chr9 31571642 31571917 -110699527 + L2 LINE L2 2936 3191 -81 26 50 0 0 chr9 31572553 31572593 -110698851 + AT_rich Low_complexity Low_complexity 1 40 0 379 309 56 38 chr9 31572997 31573293 -110698151 + LTR16C LTR ERVL 149 491 0 378 42 0 0 chr9 31573865 31573913 -110697531 + (CA)n Simple_repeat Simple_repeat 1 48 0 281 250 48 77 chr9 31576009 31576113 -110695331 + L2 LINE L2 3141 3241 -31 504 190 0 43 chr9 31576185 31576230 -110695214 - MER20 DNA MER1_type 0 219 174 261 0 0 0 chr9 31576230 31576259 -110695185 + (TA)n Simple_repeat Simple_repeat 2 30 0 504 190 0 43 chr9 31576259 31576329 -110695115 - MER20 DNA MER1_type -45 174 109 3090 183 14 16 chr9 31576675 31577298 -110694146 + L1MA7 LINE L1 5522 6143 -148 4556 186 44 15 chr9 31577301 31577969 -110693475 - L1PA15 LINE L1 -1 6815 6093 2236 108 7 0 chr9 31577969 31578274 -110693170 - AluSc SINE Alu 0 309 3 4556 186 44 15 chr9 31578274 31578707 -110692737 - L1PA15 LINE L1 -723 6093 5674 * 7475 227 18 16 chr9 31578700 31580568 -110690876 - L1PA15 LINE L1 -1393 5404 3533 1896 261 0 2 chr9 31580563 31580977 -110690467 - L1PA15 LINE L1 -6373 414 2 * 577 159 38 38 chr9 31580978 31581110 -110690334 + L1MA7 LINE L1 6135 6266 -25 24 93 0 0 chr9 31581211 31581265 -110690179 + AT_rich Low_complexity Low_complexity 1 54 0 228 185 19 0 chr9 31581273 31581327 -110690117 + A-rich Low_complexity Low_complexity 5 59 0 463 202 22 0 chr9 31581703 31581792 -110689652 + L1M4b LINE L1 4 94 -6765 1152 161 79 20 chr9 31581812 31582066 -110689378 + L1MA9 LINE L1 6044 6312 0 * 1671 236 98 83 chr9 31582053 31582938 -110688506 + L1M4b LINE L1 948 1840 -5015 583 167 48 124 chr9 31582940 31583150 -110688294 + L1MC2 LINE L1 6151 6344 0 2120 106 3 33 chr9 31584058 31584361 -110687083 + AluSg SINE Alu 3 296 -14 10469 150 31 18 chr9 31585015 31587404 -110684040 + Tigger1 DNA MER2_type 4 2414 -4 1900 136 71 14 chr9 31588076 31588429 -110683015 - THE1C LTR MaLR -2 373 1 719 169 0 0 chr9 31588526 31588644 -110682800 + FLAM_C SINE Alu 1 118 -15 1274 231 16 19 chr9 31588664 31588975 -110682469 + AluJo SINE Alu 1 310 -2 25 31 0 0 chr9 31589151 31589183 -110682261 + AT_rich Low_complexity Low_complexity 1 32 0 2638 20 0 0 chr9 31589214 31589518 -110681926 + L1PA5 LINE L1 5842 6145 -9 414 0 0 0 chr9 31590007 31590053 -110681391 + (CA)n Simple_repeat Simple_repeat 2 47 0 200 250 28 0 chr9 31590815 31590887 -110680557 + (TA)n Simple_repeat Simple_repeat 2 75 0 25 0 0 0 chr9 31591435 31591460 -110679984 + AT_rich Low_complexity Low_complexity 1 25 0 1346 319 57 23 chr9 31593900 31594517 -110676927 - L2 LINE L2 -364 2950 2313 2015 172 52 7 chr9 31595026 31595432 -110676012 - MSTA LTR MaLR 0 428 5 8204 189 30 1 chr9 31595434 31596944 -110674500 - MSTA-int LTR MaLR 0 1651 99 911 172 52 11 chr9 31596944 31597118 -110674326 - MSTA LTR MaLR -247 181 1 23 0 0 0 chr9 31597475 31597498 -110673946 + AT_rich Low_complexity Low_complexity 1 23 0 2173 111 7 0 chr9 31600201 31600499 -110670945 + AluSg SINE Alu 3 302 -8 267 301 77 35 chr9 31600599 31600885 -110670559 - L1M4c LINE L1 -4055 2591 2294 1434 179 9 63 chr9 31601006 31601325 -110670119 - AluJb SINE Alu 0 302 1 1570 273 88 18 chr9 31601350 31602405 -110669039 - L1M4c LINE L1 -4587 2059 946 5958 231 49 26 chr9 31602425 31602685 -110668759 - L1 LINE L1 -2202 4586 4333 264 59 0 0 chr9 31602685 31602719 -110668725 + (TG)n Simple_repeat Simple_repeat 2 35 0 5958 231 49 26 chr9 31602719 31604395 -110667049 - L1 LINE L1 -2455 4333 2597 8542 189 33 139 chr9 31604508 31605094 -110666350 - L1 LINE L1 -4184 2605 1959 1533 164 66 41 chr9 31605094 31605460 -110665984 + THE1C LTR MaLR 1 375 0 8542 189 33 139 chr9 31605460 31607786 -110663658 - L1 LINE L1 -4830 1959 3 637 303 149 58 chr9 31607955 31608674 -110662770 - L1M4c LINE L1 -5661 881 98 29 78 0 0 chr9 31608912 31608976 -110662468 + AT_rich Low_complexity Low_complexity 1 64 0 25 0 0 0 chr9 31609113 31609138 -110662306 + AT_rich Low_complexity Low_complexity 1 25 0 26 50 0 0 chr9 31609157 31609197 -110662247 + AT_rich Low_complexity Low_complexity 1 40 0 399 276 20 116 chr9 31609487 31609732 -110661712 + MIR SINE MIR 22 248 -14 5618 207 18 42 chr9 31610382 31610897 -110660547 - L1MA9 LINE L1 -45 6267 5742 2197 104 3 0 chr9 31610897 31611186 -110660258 - AluSc SINE Alu -17 292 3 5618 207 18 42 chr9 31611186 31612094 -110659350 - L1MA9 LINE L1 -570 5742 4814 1586 182 40 50 chr9 31612094 31612473 -110658971 - THE1C LTR MaLR 0 375 1 8262 147 91 9 chr9 31612474 31613933 -110657511 - THE1C-int LTR MaLR -1 1579 1 1726 157 45 50 chr9 31613933 31614310 -110657134 - THE1C LTR MaLR 0 375 1 5618 207 18 42 chr9 31614310 31614639 -110656805 - L1MA9 LINE L1 -1497 4815 4480 2283 99 0 13 chr9 31614639 31614941 -110656503 - AluY SINE Alu -12 299 2 5618 207 18 42 chr9 31614941 31615510 -110655934 - L1MA9 LINE L1 -1832 4480 3999 411 68 0 0 chr9 31616957 31617016 -110654428 + (GA)n Simple_repeat Simple_repeat 2 60 0 1534 228 55 3 chr9 31617016 31617362 -110654082 - MLT2D LTR ERVL -50 364 1 425 258 52 48 chr9 31618069 31618195 -110653249 - L1M4 LINE L1 -1439 4707 4583 1810 172 18 15 chr9 31618195 31618538 -110652906 - MER2 DNA MER2_type 0 344 1 425 258 52 48 chr9 31618538 31618663 -110652781 - L1M4 LINE L1 -1563 4583 4455 641 221 62 101 chr9 31618808 31619236 -110652208 + LTR1B LTR ERV1 1 534 -486 201 214 18 18 chr9 31619562 31619618 -110651826 + (CATATA)n Simple_repeat Simple_repeat 3 58 0 28 48 0 0 chr9 31620451 31620493 -110650951 + AT_rich Low_complexity Low_complexity 1 42 0 2823 90 17 68 chr9 31620657 31621125 -110650319 + MLT2A1 LTR ERVL 1 444 0 25 51 0 0 chr9 31622579 31622618 -110648826 + AT_rich Low_complexity Low_complexity 1 39 0 695 261 37 21 chr9 31623538 31623726 -110647718 + MIR SINE MIR 70 260 -2 273 236 0 0 chr9 31625003 31625058 -110646386 + MER5A DNA MER1_type 52 106 -83 23 78 0 0 chr9 31625234 31625285 -110646159 + AT_rich Low_complexity Low_complexity 1 51 0 26 30 0 0 chr9 31625339 31625372 -110646072 + AT_rich Low_complexity Low_complexity 1 33 0 25 0 0 0 chr9 31625675 31625700 -110645744 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr9 31625862 31625883 -110645561 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr9 31626158 31626190 -110645254 + AT_rich Low_complexity Low_complexity 1 32 0 266 368 11 6 chr9 31628791 31628965 -110642479 - L1MEc LINE L1 -6190 206 32 2006 112 7 0 chr9 31629904 31630209 -110641235 - AluSg SINE Alu 0 307 1 4441 185 33 14 chr9 31630214 31631201 -110640243 - L1MA8 LINE L1 -3 7707 6702 2644 256 59 21 chr9 31631187 31632647 -110638797 - L1MA8 LINE L1 -3180 4385 1885 * 1350 278 79 37 chr9 31632660 31633228 -110638216 - L1MA8 LINE L1 -6432 1057 466 1097 255 19 53 chr9 31633385 31633761 -110637683 - MLT2C1 LTR ERVL -4 393 31 3158 261 59 23 chr9 31633807 31635137 -110636307 - L1M4 LINE L1 -2382 3764 2387 39 60 0 0 chr9 31635137 31635204 -110636240 + AT_rich Low_complexity Low_complexity 1 67 0 1735 127 65 0 chr9 31635205 31635480 -110635964 + AluSq SINE Alu 1 293 -20 10191 158 35 7 chr9 31636395 31639476 -110631968 - L1MA1 LINE L1 0 6302 3134 1605 142 4 4 chr9 31639475 31639750 -110631694 + L1M1 LINE L1 3115 3389 -4176 * 1747 193 68 49 chr9 31640546 31640955 -110630489 - MSTB LTR MaLR -9 417 1 22 0 0 0 chr9 31640980 31641002 -110630442 + AT_rich Low_complexity Low_complexity 1 22 0 24 77 0 0 chr9 31641601 31641653 -110629791 + AT_rich Low_complexity Low_complexity 1 52 0 1579 263 74 82 chr9 31642170 31643064 -110628380 + L1ME LINE L1 2 888 -5182 1761 108 73 99 chr9 31643726 31644128 -110627316 + LTR14B LTR ERVK 7 608 0 5421 96 25 3 chr9 31644128 31644896 -110626548 + HERVK14 LTR ERVK 1 785 -5160 8273 72 20 36 chr9 31644965 31645343 -110626101 + HERV17 LTR ERV1 865 1247 -7379 355 40 0 20 chr9 31645343 31645393 -110626051 + L1PA6 LINE L1 6098 6146 -8 8273 72 20 36 chr9 31645393 31646182 -110625262 + HERV17 LTR ERV1 1247 2014 -6612 * 9654 59 40 26 chr9 31646167 31647474 -110623970 + HERV17 LTR ERV1 2430 3754 -4872 750 113 57 21 chr9 31647453 31647594 -110623850 + HERV17 LTR ERV1 5405 5550 -3076 * 318 62 0 0 chr9 31647597 31647645 -110623799 + HERV17 LTR ERV1 433 480 -8146 3216 75 26 15 chr9 31647646 31648291 -110623153 + HERVK14 LTR ERVK 5038 5759 -186 292 196 0 33 chr9 31648291 31648367 -110623077 + MER41C LTR ERV1 1 61 -493 727 35 52 95 chr9 31648367 31648483 -110622961 + HERVK14 LTR ERVK 5835 5945 0 287 83 0 42 chr9 31648486 31648534 -110622910 + LTR14B LTR ERVK 1 46 -562 * 1917 114 114 35 chr9 31648522 31648891 -110622553 + LTR14B LTR ERVK 211 608 0 464 307 108 22 chr9 31649955 31650427 -110621017 + MLT1F LTR MaLR 48 549 -6 386 185 0 2 chr9 31650491 31650573 -110620871 - MIR SINE MIR -60 148 68 245 298 149 35 chr9 31650872 31651013 -110620431 + MIR3 SINE MIR 37 193 -15 233 279 96 67 chr9 31651372 31651476 -110619968 - MIR3 SINE MIR -53 155 49 989 249 0 0 chr9 31651730 31651931 -110619513 - MER58A DNA MER1_type -15 209 9 291 391 8 0 chr9 31652373 31652501 -110618943 - L2 LINE L2 -225 3047 2919 1062 270 61 19 chr9 31652968 31653327 -110618117 - L1ME1 LINE L1 -7 6159 5786 200 185 19 0 chr9 31653723 31653777 -110617667 + CT-rich Low_complexity Low_complexity 4 58 0 1919 128 0 11 chr9 31653787 31654061 -110617383 - AluSc SINE Alu -38 271 1 1083 209 82 30 chr9 31655096 31655364 -110616080 + AluJo SINE Alu 5 286 -16 535 162 26 8 chr9 31655714 31655831 -110615613 + L1MA7 LINE L1 6168 6286 -5 253 306 61 96 chr9 31656289 31656550 -110614894 + L3 LINE CR1 934 1185 -392 9886 193 31 72 chr9 31656642 31659912 -110611532 - L1PB1 LINE L1 -1 6866 3876 307 148 0 0 chr9 31659912 31659966 -110611478 - L1PB4 LINE L1 -4 6152 6099 9886 193 31 72 chr9 31659966 31662640 -110608804 - L1PB1 LINE L1 -2991 3876 1093 3311 241 65 11 chr9 31662647 31663631 -110607813 - L1PB1 LINE L1 -5821 1042 6 1351 211 43 19 chr9 31666358 31666680 -110604764 - MER2 DNA MER2_type -1 344 15 245 367 129 11 chr9 31667223 31667602 -110603842 + L2 LINE L2 2065 2488 -826 1451 220 13 19 chr9 31667975 31668288 -110603156 + AluJo SINE Alu 1 311 -1 602 268 19 131 chr9 31668471 31668892 -110602552 + MLT1A2 LTR MaLR 1 374 0 312 240 130 27 chr9 31669243 31669389 -110602055 + MLT1L LTR MaLR 455 615 0 4468 79 12 3 chr9 31669723 31670328 -110601116 - L1PA11 LINE L1 -6 6168 5559 21 0 0 0 chr9 31670651 31670672 -110600772 + AT_rich Low_complexity Low_complexity 1 21 0 356 387 86 0 chr9 31670810 31670996 -110600448 - MIR SINE MIR -57 205 4 538 335 146 29 chr9 31673275 31673767 -110597677 + ERVL LTR ERVL 1872 2421 -3343 945 236 69 10 chr9 31673951 31674364 -110597080 - MLT1D LTR MaLR 0 505 22 2006 78 20 0 chr9 31674647 31674902 -110596542 + AluSc SINE Alu 23 282 -27 275 256 56 22 chr9 31675315 31675405 -110596039 + ERVL LTR ERVL 4716 4808 -956 3281 83 7 0 chr9 31675972 31676416 -110595028 - L1PA10 LINE L1 -155 6013 5567 784 87 0 0 chr9 31676416 31676519 -110594925 + L1PA10 LINE L1 6050 6152 -16 374 38 0 19 chr9 31676628 31676681 -110594763 + (TA)n Simple_repeat Simple_repeat 2 53 0 24 32 0 0 chr9 31677267 31677298 -110594146 + AT_rich Low_complexity Low_complexity 1 31 0 515 298 78 55 chr9 31678228 31678608 -110592836 + Charlie7 DNA MER1_type 1 396 -2216 2159 122 6 3 chr9 31678608 31678920 -110592524 - AluSq SINE Alu 0 313 1 515 298 78 55 chr9 31678920 31679026 -110592418 + Charlie7 DNA MER1_type 396 498 -2114 216 0 0 0 chr9 31679153 31679177 -110592267 + (GA)n Simple_repeat Simple_repeat 2 25 0 25 0 0 0 chr9 31679841 31679866 -110591578 + AT_rich Low_complexity Low_complexity 1 25 0 962 299 80 35 chr9 31679935 31680137 -110591307 + HsTC2a DNA Tc2 4 196 -1704 189 74 0 0 chr9 31680137 31680164 -110591280 + (CA)n Simple_repeat Simple_repeat 2 28 0 962 299 80 35 chr9 31680164 31680527 -110590917 + HsTC2a DNA Tc2 196 594 -150 3347 148 33 7 chr9 31680527 31681110 -110590334 + L1PA16 LINE L1 5339 5936 -230 611 152 0 0 chr9 31681110 31681202 -110590242 + AluJ/FLAM SINE Alu 1 92 -220 639 201 6 41 chr9 31681309 31681478 -110589966 + L1PA16 LINE L1 6004 6166 0 926 216 12 66 chr9 31683597 31683838 -110587606 - MLT1B LTR MaLR -20 370 143 1986 245 18 16 chr9 31684208 31684702 -110586742 + MER41E LTR ERV1 13 507 -5 446 169 0 0 chr9 31684707 31684784 -110586660 - MLT1B LTR MaLR -242 148 72 254 197 98 0 chr9 31684785 31684846 -110586598 - L1 LINE L1 -1867 4279 4213 1244 157 0 5 chr9 31684847 31685045 -110586399 + LTR29 LTR ERV1 426 622 0 1014 206 174 82 chr9 31685262 31685578 -110585866 + MER2 DNA MER2_type 1 345 0 325 377 0 9 chr9 31685828 31685934 -110585510 + L2 LINE L2 3158 3262 -10 1331 100 3 19 chr9 31686028 31686272 -110585172 + L1PA8 LINE L1 5290 5527 -627 1351 92 0 73 chr9 31686272 31686490 -110584954 - AluY SINE Alu -10 301 100 4877 79 3 2 chr9 31686490 31687135 -110584309 + L1PA8 LINE L1 5520 6165 -7 338 330 9 38 chr9 31687360 31687466 -110583978 + LTR67 LTR ERVL 88 190 -367 243 357 31 0 chr9 31687587 31687685 -110583759 + LTR67 LTR ERVL 371 471 -86 262 333 38 50 chr9 31687767 31687926 -110583518 + L2 LINE L2 2198 2354 -960 640 247 163 0 chr9 31688057 31688235 -110583209 + MER3 DNA MER1_type 3 209 0 437 186 0 12 chr9 31688871 31688957 -110582487 - MER58 DNA MER1_type 0 2420 2336 300 348 33 0 chr9 31688971 31689063 -110582381 - MER58 DNA MER1_type -2324 96 2 2228 105 3 7 chr9 31689739 31690044 -110581400 - AluSc SINE Alu -5 304 1 1652 216 33 71 chr9 31690162 31690482 -110580962 - LTR38 LTR ERV1 0 556 266 2219 91 3 3 chr9 31690482 31690778 -110580666 - AluSg SINE Alu -14 296 1 1652 216 33 71 chr9 31690778 31691035 -110580409 - LTR38 LTR ERV1 -290 266 1 188 100 25 0 chr9 31691460 31691500 -110579944 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 364 239 60 42 chr9 31692237 31692404 -110579040 - MER21B-int LTR ERV1 -5068 1608 1439 2187 191 49 71 chr9 31693020 31693555 -110577889 - MER21B-int LTR ERV1 -1107 679 157 969 186 31 62 chr9 31693707 31693933 -110577511 + MSTB-int LTR MaLR 1433 1651 0 2180 188 44 5 chr9 31693933 31694343 -110577101 + MSTB LTR MaLR 1 426 0 26 50 0 0 chr9 31694675 31694715 -110576729 + AT_rich Low_complexity Low_complexity 1 40 0 1737 338 56 30 chr9 31695906 31696784 -110574660 + L1M4b LINE L1 20 920 -5939 186 171 0 0 chr9 31696805 31696846 -110574598 + G-rich Low_complexity Low_complexity 1 41 0 369 352 62 6 chr9 31696960 31697122 -110574322 - L1M4b LINE L1 -6274 585 415 701 232 72 91 chr9 31697132 31697669 -110573775 + L1M4b LINE L1 899 1487 -5372 1836 294 53 21 chr9 31697720 31698610 -110572834 + L1M4b LINE L1 1489 2406 -4553 282 200 17 0 chr9 31698928 31698988 -110572456 + L1M4b LINE L1 4002 4062 -2895 339 44 0 0 chr9 31699033 31699078 -110572366 + (CA)n Simple_repeat Simple_repeat 2 46 0 292 321 52 52 chr9 31699665 31699858 -110571586 - L1ME3A LINE L1 -16 6154 5962 796 269 34 24 chr9 31699992 31700286 -110571158 - L1ME3A LINE L1 -269 5901 5605 1163 272 60 99 chr9 31700294 31701014 -110570430 - MER21B LTR ERV1 -150 713 22 478 251 33 107 chr9 31701050 31701416 -110570028 - L1ME3A LINE L1 -577 5593 5255 2322 70 15 12 chr9 31701543 31701871 -110569573 + L1PA7 LINE L1 5819 6147 -7 794 334 58 33 chr9 31704347 31704712 -110566732 + Zaphod DNA AcHobo 1 374 -3657 22 35 0 0 chr9 31705030 31705059 -110566385 + AT_rich Low_complexity Low_complexity 1 29 0 715 215 35 56 chr9 31705063 31705351 -110566093 + Zaphod DNA AcHobo 2024 2305 -1726 1799 259 98 40 chr9 31706169 31707331 -110564113 - L1ME2 LINE L1 -10 6154 4920 971 186 0 54 chr9 31707350 31707554 -110563890 - AluJb SINE Alu -83 229 37 299 286 41 10 chr9 31707555 31707653 -110563791 - L1ME2 LINE L1 -1977 4169 4069 219 294 0 59 chr9 31707742 31707827 -110563617 - L2 LINE L2 0 3313 3234 24 67 0 0 chr9 31708558 31708603 -110562841 + AT_rich Low_complexity Low_complexity 1 45 0 1021 273 35 20 chr9 31709004 31709352 -110562092 - LTR38 LTR ERV1 -202 354 2 411 318 123 68 chr9 31709659 31710231 -110561213 - L1 LINE L1 -1790 4356 3743 6472 61 16 2 chr9 31710291 31711317 -110560127 - L1P2 LINE L1 -592 5562 4524 4809 184 13 15 chr9 31711301 31712279 -110559165 - L1PA13 LINE L1 -4489 2309 1396 * 883 274 77 10 chr9 31712289 31713400 -110558044 - L1PA13 LINE L1 -5537 1250 24 2000 142 51 20 chr9 31714652 31715005 -110556439 - THE1B LTR MaLR 0 364 1 13694 46 9 1 chr9 31715498 31717987 -110553457 + L1PA5 LINE L1 3653 6149 -5 363 23 0 0 chr9 31721271 31721315 -110550129 + (TG)n Simple_repeat Simple_repeat 1 44 0 4544 135 16 60 chr9 31721541 31722405 -110549039 + L1PA16 LINE L1 5341 6166 0 2112 120 0 7 chr9 31722861 31723161 -110548283 + AluSx SINE Alu 3 300 -12 356 271 0 74 chr9 31723167 31723289 -110548155 + MIR SINE MIR 29 141 -121 21 71 0 0 chr9 31723870 31723912 -110547532 + AT_rich Low_complexity Low_complexity 1 42 0 38 89 0 0 chr9 31725114 31725215 -110546229 + AT_rich Low_complexity Low_complexity 1 101 0 184 130 130 37 chr9 31725723 31725777 -110545667 + MER5A DNA MER1_type 20 78 -111 1012 254 107 80 chr9 31727610 31728170 -110543274 - MLT1E1 LTR MaLR -4 650 76 217 256 23 0 chr9 31728188 31728274 -110543170 + (TA)n Simple_repeat Simple_repeat 2 89 0 267 103 0 0 chr9 31728274 31728313 -110543131 + (CA)n Simple_repeat Simple_repeat 2 40 0 3181 194 5 7 chr9 31728327 31729076 -110542368 - L1P LINE L1 -776 5375 4626 4771 89 36 23 chr9 31729076 31729804 -110541640 + L1PB1 LINE L1 5413 6149 -2 3181 194 5 7 chr9 31729804 31729815 -110541629 - L1P LINE L1 -1525 4626 4616 212 100 25 0 chr9 31729841 31729881 -110541563 + (TA)n Simple_repeat Simple_repeat 1 41 0 931 244 39 54 chr9 31730063 31730395 -110541049 + MER58B DNA MER1_type 6 332 -9 419 190 58 50 chr9 31732896 31733017 -110538427 + L1MA9 LINE L1 6187 6308 -4 439 281 23 6 chr9 31733194 31733365 -110538079 - MER104 DNA Tc2 -2 178 5 322 285 32 32 chr9 31736270 31736393 -110535051 + L2 LINE L2 3191 3313 0 26 30 0 0 chr9 31736648 31736681 -110534763 + AT_rich Low_complexity Low_complexity 1 33 0 2915 138 8 4 chr9 31737073 31737544 -110533900 - L1PA16 LINE L1 -5 6161 5689 208 176 0 20 chr9 31737668 31737719 -110533725 + (TAAA)n Simple_repeat Simple_repeat 2 51 0 3881 192 99 76 chr9 31937750 31938850 -110332594 - MER52A LTR ERV1 -73 1205 8 212 210 16 65 chr9 31939119 31939181 -110332263 - MIR SINE MIR -27 235 177 928 281 66 47 chr9 31939277 31939827 -110331617 - L1MEc LINE L1 -3594 2621 2077 2088 109 0 32 chr9 31939827 31940140 -110331304 - AluSc SINE Alu -6 303 1 928 281 66 47 chr9 31940140 31940627 -110330817 - L1MEc LINE L1 -4138 2077 1600 2509 208 27 6 chr9 31940628 31941142 -110330302 + Tigger6a DNA MER2_type 1 525 -558 2038 129 3 29 chr9 31942262 31942571 -110328873 + AluSx SINE Alu 1 301 -11 23 0 0 0 chr9 31942957 31942980 -110328464 + AT_rich Low_complexity Low_complexity 1 23 0 1185 204 112 8 chr9 31943391 31943443 -110328001 - L1M4 LINE L1 -852 5294 5249 253 0 54 0 chr9 31943443 31943480 -110327964 + (TA)n Simple_repeat Simple_repeat 1 39 0 1185 204 112 8 chr9 31943480 31943794 -110327650 - L1M4 LINE L1 -897 5249 4890 234 62 0 0 chr9 31944604 31944636 -110326808 + (A)n Simple_repeat Simple_repeat 1 32 0 331 240 124 41 chr9 31945082 31945203 -110326241 - MIR3 SINE MIR -40 168 38 21 0 0 0 chr9 31945852 31945873 -110325571 + AT_rich Low_complexity Low_complexity 1 21 0 24 85 0 0 chr9 31945922 31945981 -110325463 + AT_rich Low_complexity Low_complexity 1 59 0 647 292 64 11 chr9 31947748 31948012 -110323432 - L1MEc LINE L1 -2321 3808 3531 2105 127 0 16 chr9 31948088 31948439 -110323005 - AluSg SINE Alu 0 346 1 21 36 0 0 chr9 31948553 31948581 -110322863 + AT_rich Low_complexity Low_complexity 1 28 0 494 275 79 69 chr9 31948642 31949115 -110322329 - L1MEc LINE L1 -2717 3412 2945 3744 183 17 10 chr9 31949115 31949814 -110321630 - MER44D DNA MER2_type 0 705 2 494 275 79 69 chr9 31949814 31949908 -110321536 - L1MEc LINE L1 -3184 2945 2853 1878 112 4 4 chr9 31949908 31950167 -110321277 - AluSx SINE Alu -16 296 38 494 275 79 69 chr9 31950167 31950542 -110320902 - L1MEc LINE L1 -3276 2853 2459 231 269 30 0 chr9 31950542 31950609 -110320835 + MER3 DNA MER1_type 35 103 -106 * 719 203 158 6 chr9 31950560 31950737 -110320707 - MER3 DNA MER1_type -5 204 1 441 325 20 16 chr9 31950744 31950993 -110320451 - L1MEc LINE L1 -3683 2446 2197 201 208 21 0 chr9 31951372 31951420 -110320024 + (TA)n Simple_repeat Simple_repeat 2 50 0 417 307 113 56 chr9 31951477 31951974 -110319470 - L1MEc LINE L1 -4453 1676 1196 2057 183 66 30 chr9 31952000 31952470 -110318974 - LTR45B LTR ERV1 0 489 3 1641 186 75 6 chr9 31952700 31953022 -110318422 - MER101 LTR ERV1 -107 367 24 339 327 30 20 chr9 31953600 31953799 -110317645 - MER70-int LTR ERVL -356 4667 4467 981 133 62 71 chr9 31954659 31954869 -110316575 + MER30 DNA MER1_type 22 229 -1 528 275 12 24 chr9 31955424 31955592 -110315852 - LTR49-int LTR ERV1 -513 4423 3607 293 64 149 0 chr9 31955604 31955651 -110315793 - LTR49-int LTR ERV1 -936 5395 5342 397 315 95 40 chr9 31955668 31955941 -110315503 - L1MEc LINE L1 -4971 1148 861 318 270 113 31 chr9 31956610 31956769 -110314675 - L1MEc LINE L1 -5903 216 45 1804 268 72 21 chr9 31958997 31959567 -110311877 - MLT1E2 LTR MaLR 0 626 28 4324 92 15 0 chr9 31960882 31961653 -110309791 - L1P3 LINE L1 -595 5559 4789 311 181 48 0 chr9 31961653 31961736 -110309708 - L1MB1 LINE L1 -59 6109 4741 201 74 0 0 chr9 31961952 31961979 -110309465 + (TG)n Simple_repeat Simple_repeat 2 28 0 377 144 19 165 chr9 31962589 31962730 -110308714 - THE1C LTR MaLR -12 363 232 304 313 0 0 chr9 31962712 31962792 -110308652 + MLT1E3 LTR MaLR 300 379 -245 * 1210 158 34 62 chr9 31962790 31963082 -110308362 - THE1C LTR MaLR -91 284 1 48 88 0 0 chr9 31963124 31963249 -110308195 + AT_rich Low_complexity Low_complexity 1 125 0 195 239 0 0 chr9 31963302 31963348 -110308096 - L2 LINE L2 -18 3254 3209 1570 159 3 3 chr9 31963513 31963533 -110307911 - L1MA6 LINE L1 -323 5977 5958 937 248 49 16 chr9 31963533 31963840 -110307604 - L1PA15 LINE L1 -200 5965 5649 1310 241 129 6 chr9 31965070 31965418 -110306026 + MSTD LTR MaLR 6 396 0 1450 259 25 32 chr9 31965422 31965645 -110305799 + MSTD-int LTR MaLR 4 227 -1508 7702 23 0 0 chr9 31965645 31967325 -110304119 + L1PA3 LINE L1 4475 6152 -3 1450 259 25 32 chr9 31967325 31967508 -110303936 + MSTD-int LTR MaLR 227 409 -1326 1904 166 3 20 chr9 31967508 31967851 -110303593 + MER1B DNA MER1_type 1 337 0 1450 259 25 32 chr9 31967851 31967880 -110303564 + MSTD-int LTR MaLR 409 437 -1298 381 247 0 0 chr9 31968324 31968409 -110303035 + MSTD-int LTR MaLR 427 511 -1224 1713 137 0 87 chr9 31968409 31968731 -110302713 - MER4A LTR ERV1 0 664 371 375 173 210 0 chr9 31968769 31968850 -110302594 - MER4A LTR ERV1 -566 98 1 3551 228 42 130 chr9 31968850 31968946 -110302498 + MSTD-int LTR MaLR 508 611 -1124 342 0 0 0 chr9 31968946 31968984 -110302460 + (TG)n Simple_repeat Simple_repeat 2 39 0 3551 228 42 130 chr9 31968984 31969478 -110301966 + MSTD-int LTR MaLR 611 1147 -588 423 0 0 0 chr9 31969478 31969525 -110301919 + (TA)n Simple_repeat Simple_repeat 1 47 0 6839 53 0 8 chr9 31969527 31970498 -110300946 - L1PA6 LINE L1 -18 6136 5160 3551 228 42 130 chr9 31970498 31971249 -110300195 + MSTD-int LTR MaLR 1148 1735 0 1514 227 55 23 chr9 31971249 31971633 -110299811 + MSTD LTR MaLR 1 396 0 5414 158 45 69 chr9 31971916 31974034 -110297410 - L1MA8 LINE L1 -6 6285 4223 22 56 0 0 chr9 31974175 31974211 -110297233 + AT_rich Low_complexity Low_complexity 1 36 0 22 56 0 0 chr9 31974798 31974834 -110296610 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr9 31975478 31975499 -110295945 + AT_rich Low_complexity Low_complexity 1 21 0 335 341 95 14 chr9 31975614 31975825 -110295619 - MIR SINE MIR -22 240 13 36 0 0 0 chr9 31977947 31977983 -110293461 + AT_rich Low_complexity Low_complexity 1 36 0 1509 207 7 7 chr9 31978141 31978446 -110292998 - AluJb SINE Alu -7 305 1 378 156 146 21 chr9 31979911 31980007 -110291437 + L1MB1 LINE L1 6060 6167 -1 575 76 13 0 chr9 31980170 31980249 -110291195 - MADE1 DNA Mariner 0 80 1 21 57 0 0 chr9 31980331 31980366 -110291078 + AT_rich Low_complexity Low_complexity 1 35 0 24 53 0 0 chr9 31980591 31980629 -110290815 + AT_rich Low_complexity Low_complexity 1 38 0 382 156 78 12 chr9 31981149 31981316 -110290128 + (TA)n Simple_repeat Simple_repeat 2 179 0 2467 40 3 3 chr9 31982341 31982637 -110288807 + AluY SINE Alu 1 296 -15 198 0 0 0 chr9 31983020 31983042 -110288402 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 2868 36 0 17 chr9 31983084 31983443 -110288001 - L1PA5 LINE L1 -3 6151 5799 248 217 72 14 chr9 31984009 31984078 -110287366 - MIR SINE MIR -70 192 120 301 168 50 25 chr9 31984206 31984325 -110287119 + (TA)n Simple_repeat Simple_repeat 2 123 0 189 70 105 0 chr9 31984338 31984395 -110287049 + (TA)n Simple_repeat Simple_repeat 1 63 0 22 0 0 0 chr9 31987336 31987358 -110284086 + AT_rich Low_complexity Low_complexity 1 22 0 2090 228 16 6 chr9 31988438 31988942 -110282502 - L1MC3 LINE L1 0 7785 7277 5468 76 1 3 chr9 31988961 31989685 -110281759 - L1PA8 LINE L1 0 6172 5450 1001 227 22 13 chr9 31989688 31989913 -110281531 - L1MC3 LINE L1 -1258 6527 6301 2124 106 11 0 chr9 31990471 31990755 -110280689 + AluSg SINE Alu 12 298 -12 185 341 30 30 chr9 31990897 31991032 -110280412 + MIR SINE MIR 118 252 -10 2531 196 121 16 chr9 31991033 31991590 -110279854 + MER44D DNA MER2_type 1 631 -1956 1960 153 97 3 chr9 31991590 31991981 -110279463 - MSTA LTR MaLR 0 428 1 2531 196 121 16 chr9 31991981 31992044 -110279400 + MER44D DNA MER2_type 631 686 -19 269 355 16 8 chr9 31992403 31992527 -110278917 + L2 LINE L2 3189 3313 0 854 266 77 0 chr9 31992727 31992934 -110278510 + MER58A DNA MER1_type 1 223 -1 472 315 73 8 chr9 31993129 31993389 -110278055 - MARNA DNA Mariner -192 394 118 351 248 9 26 chr9 31994818 31994931 -110276513 - MARNA DNA Mariner -190 396 286 364 231 28 19 chr9 31994947 31995055 -110276389 - L1ME LINE L1 -584 5578 5470 2202 163 33 32 chr9 31995367 31995917 -110275527 - MLT2A2 LTR ERVL 0 554 1 182 345 52 0 chr9 31995972 31996030 -110275414 + L2 LINE L2 3157 3217 -55 201 328 0 0 chr9 31996177 31996238 -110275206 - L2 LINE L2 -239 3074 3014 371 182 30 0 chr9 31996444 31996510 -110274934 - MLT1C LTR MaLR -313 154 87 1865 234 36 5 chr9 31997119 31997530 -110273914 - MLT1C LTR MaLR 0 467 44 1470 218 71 21 chr9 31997532 31997571 -110273873 - MLT2B2 LTR ERVL 0 554 518 677 29 48 0 chr9 31997571 31997674 -110273770 + (TAGA)n Simple_repeat Simple_repeat 1 108 0 1470 218 71 21 chr9 31997674 31998077 -110273367 - MLT2B2 LTR ERVL -36 518 7 21 0 0 0 chr9 31998464 31998485 -110272959 + AT_rich Low_complexity Low_complexity 1 21 0 185 443 30 8 chr9 31998629 31998760 -110272684 - L2 LINE L2 -5 3267 3134 198 103 0 0 chr9 31998768 31998797 -110272647 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 448 259 193 0 chr9 31998828 31998963 -110272481 - MER5A DNA MER1_type -1 188 28 2566 113 0 16 chr9 31999147 31999354 -110272090 - THE1B LTR MaLR 0 364 162 1899 148 0 0 chr9 31999354 31999667 -110271777 + AluSx SINE Alu 1 313 0 2566 113 0 16 chr9 31999667 31999827 -110271617 - THE1B LTR MaLR -202 162 1 9596 119 61 8 chr9 31999827 32001327 -110270117 - THE1B-int LTR MaLR 0 1580 1 2561 110 3 0 chr9 32001335 32001690 -110269754 - THE1B LTR MaLR -8 356 1 1400 66 0 2 chr9 32001793 32002052 -110269392 - AluY SINE Alu -4 307 1 359 309 104 49 chr9 32002534 32002764 -110268680 - Charlie7 DNA MER1_type -1918 694 478 1788 158 0 37 chr9 32002764 32003062 -110268382 - AluJb SINE Alu -24 288 2 359 309 104 49 chr9 32003062 32003358 -110268086 - Charlie7 DNA MER1_type -2134 478 139 333 0 0 0 chr9 32003358 32003395 -110268049 + (TG)n Simple_repeat Simple_repeat 2 38 0 21 0 0 0 chr9 32003544 32003565 -110267879 + AT_rich Low_complexity Low_complexity 1 21 0 262 267 100 44 chr9 32004676 32004766 -110266678 + MIR SINE MIR 60 154 -108 1261 294 103 58 chr9 32004819 32005602 -110265842 + L2 LINE L2 2066 2884 -430 1759 237 51 32 chr9 32005963 32006456 -110264988 - MLT1D LTR MaLR -3 502 1 201 338 0 14 chr9 32006459 32006530 -110264914 + L2 LINE L2 3201 3270 -2 523 328 29 29 chr9 32006683 32006887 -110264557 - MIR SINE MIR -27 235 32 272 312 65 0 chr9 32007518 32007611 -110263833 - L2 LINE L2 -1 3312 3214 670 288 62 78 chr9 32007851 32008302 -110263142 - MLT1J2 LTR MaLR 0 450 7 23 78 0 0 chr9 32008823 32008874 -110262570 + AT_rich Low_complexity Low_complexity 1 51 0 231 218 0 0 chr9 32009436 32009491 -110261953 + T-rich Low_complexity Low_complexity 1 55 0 21 57 0 0 chr9 32009673 32009708 -110261736 + AT_rich Low_complexity Low_complexity 1 35 0 229 301 101 32 chr9 32009935 32010343 -110261101 + L1ME4a LINE L1 5562 5997 -124 424 347 141 24 chr9 32010619 32011037 -110260407 - L3b LINE CR1 -9 1574 1108 25 0 0 0 chr9 32011165 32011190 -110260254 + AT_rich Low_complexity Low_complexity 1 25 0 190 333 59 52 chr9 32011307 32011460 -110259984 + L2 LINE L2 2596 2749 -565 23 0 0 0 chr9 32011530 32011553 -110259891 + AT_rich Low_complexity Low_complexity 1 23 0 281 45 0 23 chr9 32011813 32011857 -110259587 + (TA)n Simple_repeat Simple_repeat 1 43 0 1920 262 49 43 chr9 32011928 32012772 -110258672 - L1ME1 LINE L1 -49 6117 5270 2907 239 68 21 chr9 32012801 32013621 -110257823 + L1MD2 LINE L1 5498 6356 -3 4435 189 64 5 chr9 32013830 32014764 -110256680 - L1 LINE L1 -1098 5048 4060 1189 198 16 35 chr9 32014764 32015078 -110256366 + L1MA7 LINE L1 5974 6281 -10 24 77 0 0 chr9 32015332 32015384 -110256060 + AT_rich Low_complexity Low_complexity 1 52 0 972 213 147 21 chr9 32015396 32015745 -110255699 - MLT2B1 LTR ERVL -44 476 1 22 56 0 0 chr9 32016550 32016586 -110254858 + AT_rich Low_complexity Low_complexity 1 36 0 575 278 6 6 chr9 32016859 32017021 -110254423 - MER52A LTR ERV1 -1 1754 1593 * 961 237 112 104 chr9 32017013 32017740 -110253704 - MER52A LTR ERV1 -147 489 2 24 53 0 0 chr9 32018424 32018462 -110252982 + AT_rich Low_complexity Low_complexity 1 38 0 456 318 60 15 chr9 32019508 32019709 -110251735 + MIR SINE MIR 49 258 -4 1784 166 0 0 chr9 32020056 32020393 -110251051 - AluJo SINE Alu 0 337 1 1941 124 3 17 chr9 32020492 32020790 -110250654 + AluSx SINE Alu 1 294 -18 186 43 0 0 chr9 32022821 32022844 -110248600 + (CA)n Simple_repeat Simple_repeat 1 23 0 23 0 0 0 chr9 32023111 32023134 -110248310 + AT_rich Low_complexity Low_complexity 1 23 0 270 0 0 0 chr9 32023194 32023224 -110248220 + (TG)n Simple_repeat Simple_repeat 2 31 0 28 0 0 0 chr9 32023247 32023275 -110248169 + AT_rich Low_complexity Low_complexity 1 28 0 334 311 6 37 chr9 32024212 32024398 -110247046 + CT-rich Low_complexity Low_complexity 1 180 0 655 133 0 31 chr9 32024475 32024603 -110246841 - L1MA9 LINE L1 -1 6311 6188 928 283 72 74 chr9 32025471 32026162 -110245282 + LTR50 LTR ERVL 10 793 -2 439 361 56 16 chr9 32026164 32026413 -110245031 + L2 LINE L2 3055 3313 0 320 268 103 73 chr9 32026419 32026759 -110244685 - HAL1b LINE L1 -13 1335 986 23 54 0 0 chr9 32028031 32028068 -110243376 + AT_rich Low_complexity Low_complexity 1 37 0 301 350 66 10 chr9 32028219 32028416 -110243028 - MIR SINE MIR -8 254 47 226 231 154 0 chr9 32028453 32028518 -110242926 + MIR3 SINE MIR 125 199 -9 2343 70 0 0 chr9 32028953 32029255 -110242189 - AluY SINE Alu -9 302 1 24 53 0 0 chr9 32029371 32029409 -110242035 + AT_rich Low_complexity Low_complexity 1 38 0 309 26 0 0 chr9 32029452 32029490 -110241954 + (CA)n Simple_repeat Simple_repeat 2 39 0 28 0 0 0 chr9 32030187 32030215 -110241229 + AT_rich Low_complexity Low_complexity 1 28 0 1889 101 4 40 chr9 32030215 32030492 -110240952 - AluSq SINE Alu -24 289 23 415 284 89 71 chr9 32030820 32031102 -110240342 - MLT1L LTR MaLR -185 430 144 399 190 17 35 chr9 32033407 32033502 -110237942 + (TA)n Simple_repeat Simple_repeat 1 93 -78 2257 192 9 9 chr9 32033502 32033934 -110237510 - Tigger2a DNA MER2_type 0 434 3 399 190 17 35 chr9 32033934 32034012 -110237432 + (TA)n Simple_repeat Simple_repeat 93 171 0 326 258 30 53 chr9 32034048 32034180 -110237264 - L1MC4 LINE L1 -1326 6716 6588 2544 7 0 7 chr9 32035702 32035987 -110235457 + AluYa5 SINE Alu 29 311 0 705 316 71 21 chr9 32036561 32036900 -110234544 - MER110 LTR ERV1 -127 364 9 4321 225 86 53 chr9 32037011 32037729 -110233715 + L1MC3 LINE L1 5420 6113 -1672 2157 121 0 7 chr9 32037729 32038027 -110233417 - AluSq SINE Alu -17 296 1 4321 225 86 53 chr9 32038027 32038423 -110233021 + L1MC3 LINE L1 6113 6593 -1192 2132 100 3 17 chr9 32038423 32038722 -110232722 + AluSp SINE Alu 12 306 -7 4321 225 86 53 chr9 32038722 32039014 -110232430 + L1MC3 LINE L1 6593 6874 -911 1308 206 73 6 chr9 32039046 32039376 -110232068 + L1MB1 LINE L1 4634 4985 -1161 2099 101 0 3 chr9 32039438 32039724 -110231720 + AluSx SINE Alu 1 285 -27 4235 200 34 8 chr9 32039738 32040885 -110230559 + L1MB1 LINE L1 4984 6165 -3 2351 217 71 26 chr9 32041063 32041708 -110229736 + L1MC3 LINE L1 6856 7529 -256 2085 158 64 33 chr9 32042516 32043031 -110228413 - MLT2A2 LTR ERVL 0 554 1 331 185 0 21 chr9 32043502 32043589 -110227855 - pTR5 LTR ERV1 -22 692 78 234 112 92 122 chr9 32043596 32043694 -110227750 - MER61E LTR ERV1 -103 466 372 1909 216 28 90 chr9 32044665 32044746 -110226698 - MLT2B3 LTR ERVL -10 544 460 4281 125 37 71 chr9 32044746 32045552 -110225892 + MER4E LTR ERV1 1 779 0 1909 216 28 90 chr9 32045552 32046050 -110225394 - MLT2B3 LTR ERVL -94 460 1 832 187 0 13 chr9 32046121 32046271 -110225173 - FRAM SINE Alu -26 150 3 267 133 0 0 chr9 32046286 32046331 -110225113 + (GAAA)n Simple_repeat Simple_repeat 2 46 0 214 307 86 29 chr9 32046355 32046495 -110224949 - MIR3 SINE MIR -60 148 1 232 252 130 0 chr9 32047047 32047162 -110224282 - MIR SINE MIR -85 177 48 188 298 0 0 chr9 32047251 32047298 -110224146 + L3 LINE CR1 1530 1576 -1 451 180 156 31 chr9 32047404 32047534 -110223910 + MIR SINE MIR 49 188 -63 229 238 16 16 chr9 32048537 32048600 -110222844 + (CATATA)n Simple_repeat Simple_repeat 2 64 0 25 0 0 0 chr9 32048636 32048661 -110222783 + AT_rich Low_complexity Low_complexity 1 25 0 1654 156 9 61 chr9 32048853 32049179 -110222265 + AluJo SINE Alu 1 309 -3 1163 174 56 77 chr9 32049249 32049536 -110221908 + AluJo SINE Alu 12 292 -20 231 267 0 0 chr9 32049537 32049627 -110221817 + L1MC4 LINE L1 6614 6703 -1339 261 0 0 0 chr9 32049627 32049656 -110221788 + (TA)n Simple_repeat Simple_repeat 1 29 0 235 185 37 0 chr9 32049722 32049776 -110221668 + (TATATG)n Simple_repeat Simple_repeat 2 57 0 189 286 0 0 chr9 32051119 32051168 -110220276 + MER5A DNA MER1_type 27 75 -114 1146 283 106 9 chr9 32051626 32052079 -110219365 + L1ME3 LINE L1 5596 6092 -70 21 82 0 0 chr9 32052432 32052481 -110218963 + AT_rich Low_complexity Low_complexity 1 49 0 926 267 11 40 chr9 32052893 32053170 -110218274 - MLT1A2 LTR MaLR 0 374 106 219 333 37 28 chr9 32054126 32054234 -110217210 + L2 LINE L2 2893 3001 -271 415 316 99 27 chr9 32054572 32054835 -110216609 - HAL1 LINE L1 -2215 292 11 951 270 63 28 chr9 32055202 32055521 -110215923 + MLT1E2 LTR MaLR 1 330 -294 2024 163 44 38 chr9 32055521 32056065 -110215379 - MLT2A2 LTR ERVL 0 554 1 13462 99 11 2 chr9 32056065 32057910 -110213534 - HERVL-A2 LTR ERVL 0 5654 3793 4047 93 2 18 chr9 32057901 32058460 -110212984 - HERVL-A2 LTR ERVL -2091 3563 3014 * 1221 189 39 56 chr9 32058464 32058770 -110212674 + MLT1E2 LTR MaLR 326 626 0 2351 67 0 10 chr9 32059201 32059501 -110211943 - AluY SINE Alu -14 297 1 2957 163 2 4 chr9 32060137 32060635 -110210809 + LOR1a LTR ERV1 1 497 0 220 306 90 0 chr9 32061101 32061212 -110210232 - MIR SINE MIR -65 197 77 273 316 34 8 chr9 32061594 32061711 -110209733 - MIR SINE MIR -25 237 118 21 36 0 0 chr9 32061742 32061770 -110209674 + AT_rich Low_complexity Low_complexity 1 28 0 1175 196 9 0 chr9 32062784 32062998 -110208446 - MLT1B LTR MaLR 0 390 175 193 241 46 81 chr9 32064075 32064162 -110207282 - MIR SINE MIR -73 189 106 198 333 83 8 chr9 32064558 32064678 -110206766 - MIR SINE MIR -62 200 72 26 0 0 0 chr9 32064908 32064934 -110206510 + AT_rich Low_complexity Low_complexity 1 26 0 227 91 0 0 chr9 32065981 32066014 -110205430 - L1MA4A LINE L1 -158 6145 6113 501 192 8 0 chr9 32066014 32066134 -110205310 + L1MA5 LINE L1 6180 6300 0 214 268 31 62 chr9 32066179 32066276 -110205168 - MIR SINE MIR -77 185 92 21 71 0 0 chr9 32066703 32066745 -110204699 + AT_rich Low_complexity Low_complexity 1 42 0 28 61 0 0 chr9 32067059 32067108 -110204336 + AT_rich Low_complexity Low_complexity 1 49 0 1047 176 5 5 chr9 32067339 32067538 -110203906 - L1 LINE L1 -1333 4813 4615 1312 240 23 31 chr9 32067540 32068019 -110203425 - L1 LINE L1 -1581 4565 4091 * 3947 197 21 50 chr9 32068017 32068408 -110203036 + L1MA10 LINE L1 5006 5407 -927 2159 104 16 0 chr9 32068408 32068715 -110202729 + AluSp SINE Alu 1 312 -1 3947 197 21 50 chr9 32068715 32069646 -110201798 + L1MA10 LINE L1 5407 6286 -48 332 237 58 45 chr9 32069645 32069801 -110201643 - L1MC3 LINE L1 -35 7750 7593 * 244 256 122 12 chr9 32069816 32069898 -110201546 - L1MC/D LINE L1 -2255 5530 5440 1934 149 32 115 chr9 32070109 32070398 -110201046 + Tigger2a DNA MER2_type 3 240 -2468 1058 138 15 36 chr9 32070398 32070593 -110200851 + L1PA15 LINE L1 5972 6162 -3 1934 149 32 115 chr9 32070593 32070774 -110200670 + Tigger2a DNA MER2_type 240 434 0 23 0 0 0 chr9 32070795 32070818 -110200626 + AT_rich Low_complexity Low_complexity 1 23 0 563 308 91 82 chr9 32071041 32071865 -110199579 - HAL1b LINE L1 -502 846 16 22 88 0 0 chr9 32072996 32073053 -110198391 + AT_rich Low_complexity Low_complexity 1 57 0 1705 189 3 17 chr9 32073445 32073742 -110197702 - AluJb SINE Alu -14 298 6 25 75 0 0 chr9 32075072 32075125 -110196319 + AT_rich Low_complexity Low_complexity 1 53 0 22 0 0 0 chr9 32075235 32075257 -110196187 + AT_rich Low_complexity Low_complexity 1 22 0 42333 39 21 1 chr9 32075265 32081292 -110190152 + L1PA3 LINE L1 1 6151 -4 26 0 0 0 chr9 32081295 32081321 -110190123 + AT_rich Low_complexity Low_complexity 1 26 0 1427 256 46 38 chr9 32081414 32081914 -110189530 + MLT1D LTR MaLR 2 505 0 243 280 21 11 chr9 32082103 32082196 -110189248 + (TATATG)n Simple_repeat Simple_repeat 3 96 0 2131 120 3 0 chr9 32082399 32082699 -110188745 - AluSg SINE Alu -9 301 1 257 385 50 0 chr9 32082714 32082875 -110188569 - MIR SINE MIR -44 218 50 1664 176 41 54 chr9 32083247 32083616 -110187828 + THE1B LTR MaLR 1 364 0 276 109 0 0 chr9 32084079 32084123 -110187321 - L1M2 LINE L1 -485 5671 5633 1591 159 3 39 chr9 32084124 32084432 -110187012 + L1PB4 LINE L1 5860 6156 0 26 64 0 0 chr9 32084822 32084869 -110186575 + AT_rich Low_complexity Low_complexity 1 47 0 53 40 0 0 chr9 32084978 32085052 -110186392 + AT_rich Low_complexity Low_complexity 1 74 0 2244 99 22 117 chr9 32085052 32085696 -110185748 - MER4B LTR ERV1 -37 742 3 2032 133 0 32 chr9 32085710 32086019 -110185425 + AluSx SINE Alu 1 299 -13 1416 187 47 0 chr9 32086038 32086295 -110185149 + AluSx SINE Alu 1 269 -43 31 68 0 0 chr9 32086295 32086354 -110185090 + AT_rich Low_complexity Low_complexity 1 59 0 286 287 51 56 chr9 32086853 32087048 -110184396 - L2 LINE L2 -106 3207 3014 * 1077 305 89 71 chr9 32087036 32087797 -110183647 - L2 LINE L2 -576 2738 1964 21 0 0 0 chr9 32087988 32088009 -110183435 + AT_rich Low_complexity Low_complexity 1 21 0 494 271 33 22 chr9 32088103 32088284 -110183160 + L2 LINE L2 2156 2338 -976 240 35 0 0 chr9 32089946 32089975 -110181469 + (CA)n Simple_repeat Simple_repeat 1 29 0 2590 151 17 2 chr9 32090359 32090776 -110180668 - MSTA LTR MaLR -5 423 1 827 172 19 6 chr9 32093184 32093341 -110178103 + L1MC2 LINE L1 6175 6333 -11 303 322 91 25 chr9 32094730 32094851 -110176593 - L2 LINE L2 -5 3267 3139 190 143 0 0 chr9 32095245 32095273 -110176171 - L2 LINE L2 -3 3269 3242 1416 226 32 87 chr9 32095386 32095855 -110175589 - LTR40b LTR ERVL -19 443 1 2106 116 0 6 chr9 32096685 32097003 -110174441 - L1PB1 LINE L1 -1 6150 5835 1606 303 115 17 chr9 32097036 32097756 -110173688 - L2 LINE L2 -737 2577 1787 325 292 33 42 chr9 32097835 32097955 -110173489 - L2 LINE L2 -3192 122 4 23 86 0 0 chr9 32100453 32100511 -110170933 + AT_rich Low_complexity Low_complexity 1 58 0 253 263 0 0 chr9 32100839 32100896 -110170548 + (TG)n Simple_repeat Simple_repeat 2 58 0 21 36 0 0 chr9 32101608 32101636 -110169808 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr9 32101877 32101900 -110169544 + AT_rich Low_complexity Low_complexity 1 23 0 194 328 17 17 chr9 32102586 32102644 -110168800 + L2 LINE L2 3154 3211 -61 1732 164 3 67 chr9 32102805 32103165 -110168279 - MER1B DNA MER1_type 0 337 1 424 131 37 9 chr9 32103298 32103405 -110168039 + (TA)n Simple_repeat Simple_repeat 1 110 0 308 248 19 57 chr9 32103413 32103518 -110167926 - L1MC4 LINE L1 -1339 6703 6603 28 0 0 0 chr9 32103634 32103662 -110167782 + AT_rich Low_complexity Low_complexity 1 28 0 10624 196 23 12 chr9 32104196 32107146 -110164298 + L1P5 LINE L1 2769 5753 -398 680 271 134 46 chr9 32107146 32107475 -110163969 + MLT2B1 LTR ERVL 116 483 -37 240 59 0 0 chr9 32107475 32107509 -110163935 + (TG)n Simple_repeat Simple_repeat 2 35 0 680 271 134 46 chr9 32107509 32107551 -110163893 + MLT2B1 LTR ERVL 483 520 0 2200 119 19 24 chr9 32108000 32108377 -110163067 + THE1C LTR MaLR 1 375 0 674 232 109 85 chr9 32108662 32109033 -110162411 + MER41B LTR ERV1 97 365 -113 498 279 11 37 chr9 32109025 32109215 -110162229 + MER66A LTR ERV1 285 469 -9 * 1978 160 13 16 chr9 32109305 32109681 -110161763 - THE1C LTR MaLR 0 375 1 498 269 82 22 chr9 32110002 32110184 -110161260 - MIR SINE MIR -68 194 2 26 93 0 0 chr9 32110687 32110762 -110160682 + AT_rich Low_complexity Low_complexity 1 75 0 1188 201 93 0 chr9 32111284 32111543 -110159901 + AluJb SINE Alu 2 284 -18 38 0 0 0 chr9 32111579 32111617 -110159827 + AT_rich Low_complexity Low_complexity 1 38 0 291 333 27 9 chr9 32112205 32112316 -110159128 - L2 LINE L2 -7 3306 3194 209 184 0 0 chr9 32112617 32112655 -110158789 - L2 LINE L2 -8 3305 3268 33 25 0 0 chr9 32112937 32112977 -110158467 + AT_rich Low_complexity Low_complexity 1 40 0 255 346 24 47 chr9 32113097 32113224 -110158220 - MER5A DNA MER1_type -25 164 41 3522 136 2 4 chr9 32113473 32114001 -110157443 + MER1A DNA MER1_type 1 527 0 538 305 40 35 chr9 32114287 32114487 -110156957 + MER63A DNA MER1_type 8 208 -2 279 376 47 7 chr9 32116361 32116510 -110154934 - MIR SINE MIR -87 175 21 12454 178 57 16 chr9 32118135 32118490 -110152954 - L1 LINE L1 -1110 6455 6116 1865 159 0 3 chr9 32118490 32118808 -110152636 - AluSx SINE Alu 0 312 3 12454 178 57 16 chr9 32118808 32121668 -110149776 - L1 LINE L1 -1449 6116 3102 657 251 63 31 chr9 32121670 32121957 -110149487 + L1M4 LINE L1 2429 2724 -3422 308 271 8 0 chr9 32121979 32122097 -110149347 + L1M4 LINE L1 2782 2900 -3246 357 198 188 10 chr9 32122247 32122343 -110149101 - LTR25 LTR ERV1 -260 534 422 483 190 58 0 chr9 32122503 32122610 -110148834 - MER61E LTR ERV1 -473 96 1 1353 255 31 12 chr9 32122612 32123031 -110148413 - L1M4 LINE L1 -3467 2679 2253 27 0 0 0 chr9 32123834 32123861 -110147583 + AT_rich Low_complexity Low_complexity 1 27 0 22 35 0 0 chr9 32124526 32124555 -110146889 + AT_rich Low_complexity Low_complexity 1 29 0 315 0 0 0 chr9 32124650 32124685 -110146759 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 1535 197 118 14 chr9 32125053 32125470 -110145974 + MLT1C LTR MaLR 6 465 -2 32 26 0 0 chr9 32126667 32126706 -110144738 + AT_rich Low_complexity Low_complexity 1 39 0 777 259 114 102 chr9 32126769 32127268 -110144176 - L1ME3A LINE L1 -27 6143 5639 380 253 79 33 chr9 32127259 32127500 -110143944 - L1MEc LINE L1 -3784 3157 2906 * 444 364 117 0 chr9 32127813 32128165 -110143279 - L1MEc LINE L1 -4576 2546 2154 4166 151 39 18 chr9 32128492 32129261 -110142183 - LTR1 LTR ERV1 0 785 1 324 270 31 86 chr9 32130260 32130345 -110141099 - MLT1J1 LTR MaLR -292 154 81 2030 113 0 86 chr9 32130345 32130681 -110140763 + AluSp SINE Alu 1 307 -6 324 270 31 86 chr9 32130681 32130758 -110140686 - MLT1J1 LTR MaLR -365 81 1 42 20 0 0 chr9 32131004 32131053 -110140391 + AT_rich Low_complexity Low_complexity 1 49 0 26 0 0 0 chr9 32131506 32131532 -110139912 + AT_rich Low_complexity Low_complexity 1 26 0 259 270 95 47 chr9 32132400 32132548 -110138896 - L1MEc LINE L1 -6250 173 19 5035 167 34 19 chr9 32132846 32133321 -110138123 - L1MA8 LINE L1 0 6291 5824 330 26 0 0 chr9 32133321 32133360 -110138084 + (TG)n Simple_repeat Simple_repeat 2 40 0 5035 167 34 19 chr9 32133360 32134162 -110137282 - L1MA8 LINE L1 -467 5824 4992 3654 149 48 4 chr9 32134155 32134166 -110137278 + L1 LINE L1 4057 4066 -2080 * 6649 73 8 22 chr9 32134166 32135561 -110135883 - L1PA6 LINE L1 0 6154 4773 3654 149 48 4 chr9 32135561 32136241 -110135203 + L1PA6 LINE L1 4066 4778 -1368 1535 230 22 10 chr9 32136423 32136888 -110134556 - MER101B LTR ERV1 -57 417 3 321 360 40 25 chr9 32137188 32137463 -110133981 + MLT1H LTR MaLR 1 279 -270 189 74 0 0 chr9 32138777 32138804 -110132640 + (TTG)n Simple_repeat Simple_repeat 1 27 0 1983 42 0 0 chr9 32139539 32139779 -110131665 + L1PA3 LINE L1 5913 6152 -3 42 36 0 0 chr9 32140241 32140297 -110131147 + AT_rich Low_complexity Low_complexity 1 56 0 32 75 0 0 chr9 32141194 32141261 -110130183 + AT_rich Low_complexity Low_complexity 1 67 0 212 364 58 8 chr9 32141934 32142055 -110129389 + MIR SINE MIR 13 139 -123 1721 167 16 16 chr9 32143145 32143456 -110127988 + AluJb SINE Alu 1 311 -1 303 265 60 43 chr9 32143762 32143879 -110127565 - L2 LINE L2 0 3272 3154 283 366 142 41 chr9 32144094 32145428 -110126016 - L2 LINE L2 -462 2852 1384 201 350 39 10 chr9 32145596 32145699 -110125745 + MIR SINE MIR 41 146 -62 462 218 10 0 chr9 32146836 32146937 -110124507 - U13 snRNA snRNA -2 102 1 1387 244 16 16 chr9 32147747 32148111 -110123333 + MLT1A1 LTR MaLR 2 365 0 22 35 0 0 chr9 32148980 32149009 -110122435 + AT_rich Low_complexity Low_complexity 1 29 0 1761 223 12 0 chr9 32149586 32149932 -110121512 - MLT1-int LTR MaLR -513 858 509 296 179 30 0 chr9 32149933 32150000 -110121444 + CT-rich Low_complexity Low_complexity 4 72 0 1841 235 38 30 chr9 32150000 32150265 -110121179 - MLT1-int LTR MaLR -838 533 272 2403 65 7 0 chr9 32150265 32150573 -110120871 - AluY SINE Alu -1 310 1 1841 235 38 30 chr9 32150573 32150835 -110120609 - MLT1-int LTR MaLR -1099 272 2 1620 201 41 46 chr9 32150837 32150986 -110120458 - MLT2C1 LTR ERVL -1 396 248 4178 130 42 3 chr9 32150986 32151672 -110119772 - L1PA15 LINE L1 -2 6163 5451 1620 201 41 46 chr9 32151672 32151910 -110119534 - MLT2C1 LTR ERVL -149 248 11 2401 264 22 39 chr9 32151920 32152738 -110118706 - LOR1-int LTR ERV1 -803 4133 3330 1953 154 0 0 chr9 32152936 32153234 -110118210 - AluSx SINE Alu -14 298 1 282 136 29 146 chr9 32153632 32153735 -110117709 - LOR1-int LTR ERV1 -1819 3117 3027 4695 53 2 2 chr9 32154117 32154734 -110116710 + L1P LINE L1 4777 5393 -753 7213 50 1 3 chr9 32154849 32156145 -110115299 + L1PA6 LINE L1 4860 6153 -1 1894 157 0 19 chr9 32156318 32156630 -110114814 - AluSx SINE Alu -6 306 1 264 212 53 82 chr9 32156678 32156848 -110114596 - LOR1-int LTR ERV1 -3782 4338 4174 2227 165 25 16 chr9 32157126 32157574 -110113870 + L1MB3 LINE L1 5730 6181 -2 47 0 0 0 chr9 32157584 32157631 -110113813 + AT_rich Low_complexity Low_complexity 1 47 0 1211 224 74 20 chr9 32157670 32158022 -110113422 - LTR25 LTR ERV1 -10 784 414 290 188 141 0 chr9 32157992 32158056 -110113388 - MER51A LTR ERV1 -354 280 208 * 518 131 12 0 chr9 32158227 32158311 -110113133 - MER61E LTR ERV1 -484 85 1 234 0 0 0 chr9 32159127 32159153 -110112291 + (TTTTA)n Simple_repeat Simple_repeat 3 28 0 2446 130 57 4 chr9 32159153 32159558 -110111886 - L1PA10 LINE L1 -20 6148 5725 853 238 84 0 chr9 32159796 32160023 -110111421 - ORSL DNA AcHobo 0 275 30 332 267 113 35 chr9 32160141 32160546 -110110898 + MLT1J2 LTR MaLR 15 444 -2 396 0 0 0 chr9 32160768 32160812 -110110632 + (CA)n Simple_repeat Simple_repeat 2 45 0 25 65 0 0 chr9 32161000 32161046 -110110398 + AT_rich Low_complexity Low_complexity 1 46 0 33 80 0 0 chr9 32163404 32163479 -110107965 + AT_rich Low_complexity Low_complexity 1 75 0 1209 172 62 41 chr9 32163689 32163979 -110107465 - L1MB5 LINE L1 -8 6166 5871 21 36 0 0 chr9 32164727 32164755 -110106689 + AT_rich Low_complexity Low_complexity 1 28 0 24 67 0 0 chr9 32164860 32164905 -110106539 + AT_rich Low_complexity Low_complexity 1 45 0 270 311 90 54 chr9 32165949 32166116 -110105328 + MLT1J LTR MaLR 106 278 -233 250 270 40 0 chr9 32166490 32166564 -110104880 + MIR SINE MIR 78 154 -108 248 146 24 0 chr9 32166967 32167006 -110104438 - MLT1B LTR MaLR -2 388 349 1123 177 26 5 chr9 32167006 32167227 -110104217 + LTR18B LTR ERVL 1 259 -98 876 166 67 36 chr9 32167304 32167527 -110103917 + LTR18B LTR ERVL 385 614 0 1405 218 3 31 chr9 32167534 32167855 -110103589 + HERVL18 LTR ERVL 2 313 -5734 1404 218 7 0 chr9 32167829 32168100 -110103344 + HERVL18 LTR ERVL 492 764 -5283 * 512 158 0 11 chr9 32168109 32168204 -110103240 + HERVL18 LTR ERVL 874 967 -5080 * 1135 143 14 13 chr9 32168196 32168543 -110102901 + HERVL18 LTR ERVL 1399 1810 -4237 1117 113 118 2 chr9 32168542 32168775 -110102669 + HERVL18 LTR ERVL 2119 2436 -3611 * 2946 163 11 14 chr9 32168774 32169587 -110101857 + HERVL18 LTR ERVL 2725 3573 -2474 527 135 79 11 chr9 32169595 32169684 -110101760 + HERVL18 LTR ERVL 4394 4488 -1559 297 220 0 0 chr9 32169684 32169734 -110101710 + HERVL18 LTR ERVL 5209 5258 -789 1276 208 267 16 chr9 32169983 32170474 -110100970 + LTR18B LTR ERVL 1 614 0 1001 242 30 83 chr9 32170474 32170843 -110100601 - MLT1B LTR MaLR -36 354 6 2035 250 73 31 chr9 32170854 32171443 -110100001 + MLT1E1 LTR MaLR 41 654 0 1427 203 16 23 chr9 32172699 32173004 -110098440 - AluJb SINE Alu -7 305 3 1372 23 23 0 chr9 32174450 32174606 -110096838 + (TTTC)n Simple_repeat Simple_repeat 1 337 0 1372 23 23 0 chr9 32174606 32174780 -110096664 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 1639 186 33 21 chr9 32176228 32176285 -110095159 - MER7A DNA MER2_type -2692 346 291 2206 129 14 32 chr9 32176285 32176656 -110094788 - THE1B LTR MaLR 0 364 1 1639 186 33 21 chr9 32176656 32176932 -110094512 - MER7A DNA MER2_type -2747 291 11 269 250 0 0 chr9 32176931 32176983 -110094461 - MER7A DNA MER2_type -295 53 2 * 23 0 0 0 chr9 32176997 32177020 -110094424 + AT_rich Low_complexity Low_complexity 1 23 0 4790 212 80 22 chr9 32177680 32179062 -110092382 - L1MEd LINE L1 -2390 5175 3875 207 0 0 0 chr9 32179062 32179085 -110092359 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4790 212 80 22 chr9 32179085 32179169 -110092275 - L1MEd LINE L1 -3690 3875 3797 180 0 0 0 chr9 32179169 32179189 -110092255 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 4790 212 80 22 chr9 32179189 32179402 -110092042 - L1MEd LINE L1 -3768 3797 3598 233 56 0 28 chr9 32179402 32179438 -110092006 + (TA)n Simple_repeat Simple_repeat 1 35 0 4790 212 80 22 chr9 32179438 32179561 -110091883 - L1MEd LINE L1 -3967 3598 3484 11499 25 0 0 chr9 32179561 32181696 -110089748 + L1PA3 LINE L1 4021 6153 -2 4790 212 80 22 chr9 32181696 32181719 -110089725 - L1MEd LINE L1 -4081 3484 3464 330 115 0 0 chr9 32181719 32181771 -110089673 + (TA)n Simple_repeat Simple_repeat 2 53 0 4790 212 80 22 chr9 32181771 32181938 -110089506 - L1MEd LINE L1 -4101 3464 3046 240 256 120 26 chr9 32182050 32182167 -110089277 + LTR16C LTR ERVL 279 406 -85 309 267 44 100 chr9 32182565 32182745 -110088699 - L1MEd LINE L1 -5031 2524 2355 1434 199 32 71 chr9 32182977 32183440 -110088004 - LTR56 LTR ERV1 0 445 1 23 0 0 0 chr9 32184062 32184085 -110087359 + AT_rich Low_complexity Low_complexity 1 23 0 651 252 93 11 chr9 32185052 32185330 -110086114 - L1ME2 LINE L1 -10 6154 5854 282 343 33 50 chr9 32185444 32185625 -110085819 + L3 LINE CR1 1252 1429 -148 554 198 59 48 chr9 32185971 32186006 -110085438 + MER53 DNA DNA 1 34 -155 1457 181 29 25 chr9 32186006 32186287 -110085157 + AluJo SINE Alu 1 282 -30 603 40 0 0 chr9 32186288 32186362 -110085082 + (GGAA)n Simple_repeat Simple_repeat 4 77 0 554 198 59 48 chr9 32186362 32186511 -110084933 + MER53 DNA DNA 33 189 0 456 324 23 95 chr9 32187474 32187823 -110083621 - L2 LINE L2 -15 3298 2975 2494 37 0 0 chr9 32187913 32188213 -110083231 + L1PA5 LINE L1 5848 6147 -7 1162 268 65 3 chr9 32188261 32188597 -110082847 - MER110 LTR ERV1 -116 375 19 369 0 0 0 chr9 32188607 32188648 -110082796 + (TTA)n Simple_repeat Simple_repeat 2 42 0 641 353 32 0 chr9 32188657 32188909 -110082535 - L2 LINE L2 -340 2974 2715 233 236 18 0 chr9 32190176 32190231 -110081213 + (TATG)n Simple_repeat Simple_repeat 1 56 0 370 274 68 76 chr9 32190246 32190787 -110080657 - L1M4 LINE L1 -2172 3974 3438 22 0 0 0 chr9 32190903 32190925 -110080519 + AT_rich Low_complexity Low_complexity 1 22 0 2894 71 13 2 chr9 32190992 32191388 -110080056 - L1PA7 LINE L1 0 6154 5755 2124 117 6 26 chr9 32191388 32191731 -110079713 + L1P LINE L1 2106 2441 -3705 623 124 62 149 chr9 32191809 32192003 -110079441 + MER53 DNA DNA 2 178 -11 420 289 176 26 chr9 32192040 32192427 -110079017 - L1M4 LINE L1 -2961 3185 2741 928 94 0 0 chr9 32192467 32192584 -110078860 - AluY SINE Alu -184 127 11 369 312 73 30 chr9 32192602 32192932 -110078512 - L1M4 LINE L1 -3537 2609 2266 438 236 46 41 chr9 32193144 32193339 -110078105 - L1MC4 LINE L1 -146 7896 7701 1086 242 181 50 chr9 32193361 32194047 -110077397 + L1MC4a LINE L1 5895 6648 -1137 207 297 0 14 chr9 32194058 32194132 -110077312 + (TA)n Simple_repeat Simple_repeat 2 74 0 521 287 38 38 chr9 32194843 32195052 -110076392 - MER63A DNA MER1_type 0 210 2 1751 315 71 48 chr9 32195514 32197492 -110073952 + L1MEc LINE L1 165 2187 -4209 321 289 72 36 chr9 32197474 32197837 -110073607 + L1MEc LINE L1 2659 3034 -3181 * 2101 125 0 0 chr9 32197839 32198136 -110073308 + AluSx SINE Alu 1 297 -15 597 290 41 19 chr9 32198162 32198576 -110072868 + L1MEc LINE L1 3155 3577 -2638 209 366 71 21 chr9 32198691 32198767 -110072677 + L2 LINE L2 2049 2120 -1194 2436 55 3 6 chr9 32198767 32199079 -110072365 - AluY SINE Alu 0 311 1 209 366 71 21 chr9 32199079 32199327 -110072117 + L2 LINE L2 2120 2389 -925 358 233 26 43 chr9 32199899 32200015 -110071429 - L1M4 LINE L1 -2095 4051 3938 2254 127 94 10 chr9 32200052 32200445 -110070999 + MSTA LTR MaLR 3 428 0 396 0 0 0 chr9 32200445 32200489 -110070955 + (TG)n Simple_repeat Simple_repeat 2 45 0 277 305 0 0 chr9 32200489 32200571 -110070873 - L1M4 LINE L1 -2472 3674 3593 183 338 235 15 chr9 32200660 32201128 -110070316 - L2 LINE L2 -925 2389 1819 2198 92 3 26 chr9 32201338 32201644 -110069800 + AluSc SINE Alu 3 301 -8 229 265 96 0 chr9 32201822 32201905 -110069539 - MLT1I LTR MaLR -8 401 311 339 341 103 9 chr9 32201961 32202175 -110069269 - MLT1J2 LTR MaLR -201 249 16 802 315 108 40 chr9 32202289 32203013 -110068431 + L2 LINE L2 2532 3311 -2 31 0 0 0 chr9 32203038 32203069 -110068375 + AT_rich Low_complexity Low_complexity 1 31 0 1775 193 33 28 chr9 32203296 32203690 -110067754 - MSTD LTR MaLR 0 396 1 453 222 9 9 chr9 32203722 32203830 -110067614 - L1ME LINE L1 -478 5643 5536 358 270 62 61 chr9 32204220 32204466 -110066978 + MIR SINE MIR 15 256 -6 847 138 19 19 chr9 32206443 32206603 -110064841 - L1MA9 LINE L1 0 6312 6153 1706 158 142 16 chr9 32207331 32207711 -110063733 - MSTA LTR MaLR 0 428 1 242 312 21 59 chr9 32208839 32209025 -110062419 - HAL1b LINE L1 -697 651 473 210 269 0 64 chr9 32209407 32209548 -110061896 + T-rich Low_complexity Low_complexity 3 134 0 397 209 0 0 chr9 32212883 32212974 -110058470 - L1MB8 LINE L1 0 6178 6088 383 238 125 42 chr9 32213008 32213176 -110058268 + MLT1D LTR MaLR 324 505 0 229 324 112 42 chr9 32213319 32213578 -110057866 - L2 LINE L2 -488 2826 2550 2279 75 0 50 chr9 32214504 32214825 -110056619 - AluY SINE Alu -6 305 1 1863 168 50 19 chr9 32214885 32215249 -110056195 - THE1C LTR MaLR 0 375 1 242 0 0 0 chr9 32216854 32216883 -110054561 + MADE1 DNA Mariner 51 79 -1 547 260 58 6 chr9 32216883 32217056 -110054388 - L2 LINE L2 -32 3281 3100 231 179 0 0 chr9 32217113 32217152 -110054292 + MLT1E3 LTR MaLR 46 84 -540 427 273 159 0 chr9 32217211 32217387 -110054057 + HsTC2 DNA Tc2 341 544 -1354 22 0 0 0 chr9 32217964 32217986 -110053458 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr9 32220771 32220800 -110050644 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr9 32220896 32220920 -110050524 + AT_rich Low_complexity Low_complexity 1 24 0 25 75 0 0 chr9 32222306 32222359 -110049085 + AT_rich Low_complexity Low_complexity 1 53 0 1060 259 39 86 chr9 32222852 32222976 -110048468 + MLT1B LTR MaLR 4 132 -258 1653 186 148 13 chr9 32222976 32223353 -110048091 + MSTA LTR MaLR 1 428 0 1060 259 39 86 chr9 32223353 32223634 -110047810 + MLT1B LTR MaLR 132 390 0 227 237 0 34 chr9 32223913 32223972 -110047472 + (CATA)n Simple_repeat Simple_repeat 2 58 0 299 333 44 7 chr9 32224923 32225058 -110046386 - MIR SINE MIR 0 262 123 303 358 42 0 chr9 32225488 32225608 -110045836 + L2 LINE L2 2697 2821 -493 1813 228 72 23 chr9 32225761 32226234 -110045210 - MLT1D LTR MaLR 0 505 10 267 280 40 0 chr9 32226444 32226519 -110044925 + L2 LINE L2 3236 3313 0 3962 229 33 26 chr9 32226776 32228615 -110042829 + L1MB8 LINE L1 4334 6177 -1 823 304 27 69 chr9 32229151 32229601 -110041843 - LTR16A LTR ERVL -5 445 15 342 295 81 7 chr9 32229735 32229929 -110041515 - L1M4c LINE L1 -4836 1548 1345 246 105 0 0 chr9 32230506 32230544 -110040900 + (T)n Simple_repeat Simple_repeat 1 38 0 255 309 59 29 chr9 32231258 32231394 -110040050 + LTR67 LTR ERVL 334 473 -84 261 260 0 0 chr9 32231779 32231883 -110039561 + (TA)n Simple_repeat Simple_repeat 1 104 0 225 0 0 0 chr9 32231980 32232005 -110039439 + (A)n Simple_repeat Simple_repeat 1 25 0 12554 186 28 7 chr9 32232222 32235947 -110035497 - L1MA3 LINE L1 0 7724 3931 234 288 55 0 chr9 32236015 32236088 -110035356 + L2 LINE L2 3237 3313 0 6548 206 180 57 chr9 32236291 32238162 -110033282 - L1MA3 LINE L1 -5443 2122 22 183 268 81 106 chr9 32239204 32239327 -110032117 + L2 LINE L2 3175 3294 -19 185 273 0 0 chr9 32239598 32239642 -110031802 - MIR3 SINE MIR -48 160 117 32 57 0 0 chr9 32239944 32239997 -110031447 + AT_rich Low_complexity Low_complexity 1 53 0 26 0 0 0 chr9 32240053 32240079 -110031365 + AT_rich Low_complexity Low_complexity 1 26 0 1605 330 105 20 chr9 32240183 32241517 -110029927 - L2 LINE L2 -1 3312 1870 25 51 0 0 chr9 32241574 32241613 -110029831 + AT_rich Low_complexity Low_complexity 1 39 0 273 271 71 57 chr9 32243004 32243144 -110028300 + MLT1L LTR MaLR 5 146 -469 21 0 0 0 chr9 32243332 32243353 -110028091 + AT_rich Low_complexity Low_complexity 1 21 0 293 206 88 0 chr9 32243818 32243886 -110027558 - MER103 DNA DNA -42 124 51 1372 288 49 10 chr9 32243965 32244375 -110027069 - MLT1F1 LTR MaLR -139 428 3 2400 76 0 0 chr9 32245071 32245372 -110026072 - AluY SINE Alu -10 301 1 219 69 0 0 chr9 32246279 32246308 -110025136 + (TA)n Simple_repeat Simple_repeat 2 30 0 444 267 30 23 chr9 32246308 32246439 -110025005 - MLT1F1 LTR MaLR -322 245 114 294 250 10 21 chr9 32246448 32246544 -110024900 + (TA)n Simple_repeat Simple_repeat 2 96 0 8356 64 22 0 chr9 32247065 32248187 -110023257 - L1P LINE L1 -1188 4958 3812 612 330 104 40 chr9 32248240 32248861 -110022583 + L2 LINE L2 2658 3311 -2 1011 205 147 23 chr9 32249702 32250009 -110021435 + MER2 DNA MER2_type 1 345 0 22 0 0 0 chr9 32250475 32250497 -110020947 + AT_rich Low_complexity Low_complexity 1 22 0 491 126 11 42 chr9 32251158 32251253 -110020191 - L1PA16 LINE L1 -2 6164 6073 741 282 67 82 chr9 32251255 32252248 -110019196 - LTR28 LTR ERV1 0 1755 1 29934 130 21 3 chr9 32252250 32256661 -110014783 - LTR28-int LTR ERV1 -2 7089 2603 239 307 60 67 chr9 32256899 32257049 -110014395 - MIR SINE MIR -94 168 20 2758 13 0 0 chr9 32259817 32260127 -110011317 - L1P1 LINE L1 -349 5806 5497 964 34 0 0 chr9 32260127 32260243 -110011201 + L1PA2 LINE L1 6037 6153 -2 33 25 0 0 chr9 32260270 32260310 -110011134 + AT_rich Low_complexity Low_complexity 1 40 0 1117 259 109 59 chr9 32260637 32260980 -110010464 + L1MEc LINE L1 241 565 -6042 285 75 0 0 chr9 32260980 32261020 -110010424 + (TG)n Simple_repeat Simple_repeat 1 40 0 186 43 0 0 chr9 32261019 32261042 -110010402 + (GA)n Simple_repeat Simple_repeat 1 23 0 * 1117 259 109 59 chr9 32261020 32261205 -110010239 + L1MEc LINE L1 565 784 -5823 405 0 0 0 chr9 32261205 32261250 -110010194 + (CA)n Simple_repeat Simple_repeat 2 46 0 1117 259 109 59 chr9 32261250 32261337 -110010107 + L1MEc LINE L1 784 865 -5742 577 263 227 39 chr9 32261341 32261698 -110009746 + MLT2F LTR ERVL 34 457 -206 306 0 0 0 chr9 32261801 32261835 -110009609 + (TG)n Simple_repeat Simple_repeat 2 35 0 526 223 6 13 chr9 32261895 32262052 -110009392 + L1MEc LINE L1 898 1053 -5554 867 246 137 49 chr9 32262090 32262500 -110008944 + L1MD2 LINE L1 5912 6357 -2 290 216 33 93 chr9 32262684 32262882 -110008562 + L1MEc LINE L1 1809 2095 -4455 2780 76 3 3 chr9 32264509 32264864 -110006580 - THE1A LTR MaLR 0 355 1 10864 114 14 0 chr9 32264864 32266423 -110005021 - THE1A-int LTR MaLR 0 1580 1 2562 107 3 0 chr9 32266423 32266777 -110004667 - THE1A LTR MaLR 0 355 1 22 0 0 0 chr9 32267632 32267654 -110003790 + AT_rich Low_complexity Low_complexity 1 22 0 2013 199 62 41 chr9 32267781 32268268 -110003176 + MER67D LTR ERV1 14 510 -4 22 0 0 0 chr9 32269396 32269418 -110002026 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr9 32270061 32270087 -110001357 + AT_rich Low_complexity Low_complexity 1 26 0 2076 202 2 2 chr9 32270461 32270857 -110000587 - L1PA15 LINE L1 -3 6162 5767 185 300 18 100 chr9 32270901 32271011 -110000433 - L2 LINE L2 -317 2955 2855 189 107 0 0 chr9 32271019 32271047 -110000397 + (CAGAGA)n Simple_repeat Simple_repeat 2 29 0 551 231 148 35 chr9 32271258 32271461 -109999983 + ERVL LTR ERVL 2 227 -5537 * 4473 108 13 149 chr9 32271459 32273043 -109998401 + pTR5 LTR ERV1 741 2606 0 727 254 47 42 chr9 32273095 32273331 -109998113 + ERVL LTR ERVL 299 535 -5229 256 81 27 0 chr9 32273331 32273368 -109998076 + L1PA12 LINE L1 4525 4562 -1584 817 93 0 0 chr9 32273369 32273476 -109997968 + AluY SINE Alu 187 293 -18 5383 118 47 5 chr9 32273478 32273667 -109997777 + L1PA12 LINE L1 4549 4729 -1439 2721 171 68 20 chr9 32273667 32274228 -109997216 - LTR4 LTR ERV1 0 588 1 5383 118 47 5 chr9 32274228 32275617 -109995827 + L1PA12 LINE L1 4729 6164 -4 18546 210 46 16 chr9 32275635 32279419 -109992025 + ERVL LTR ERVL 530 4202 -1562 2000 128 24 0 chr9 32279419 32279709 -109991735 - AluSq SINE Alu -14 299 3 1618 119 116 11 chr9 32279711 32279979 -109991465 - AluSx SINE Alu -16 296 1 18546 210 46 16 chr9 32279979 32280085 -109991359 + ERVL LTR ERVL 4202 4537 -1227 1001 306 70 44 chr9 32280531 32280982 -109990462 + MLT1E LTR MaLR 4 475 -118 1799 130 68 40 chr9 32280982 32281336 -109990108 + THE1B LTR MaLR 1 364 0 1001 306 70 44 chr9 32281336 32281456 -109989988 + MLT1E LTR MaLR 475 590 -3 1194 251 53 29 chr9 32281589 32281963 -109989481 + L1ME1 LINE L1 5779 6161 -5 305 304 9 43 chr9 32282184 32282299 -109989145 - MLT1J2 LTR MaLR -339 111 1 270 132 0 0 chr9 32282535 32282588 -109988856 + (TA)n Simple_repeat Simple_repeat 2 54 0 378 0 0 0 chr9 32283022 32283064 -109988380 + (TG)n Simple_repeat Simple_repeat 2 43 0 1707 214 52 31 chr9 32283410 32283826 -109987618 - MSTA LTR MaLR 0 408 1 7859 197 40 12 chr9 32283826 32285432 -109986012 - MSTA-int LTR MaLR 0 1651 1 2069 179 65 2 chr9 32285432 32285835 -109985609 - MSTA LTR MaLR 0 428 1 2460 253 90 41 chr9 32286795 32289323 -109982121 - L1MCb LINE L1 -3082 3482 704 8863 170 28 33 chr9 32289340 32290546 -109980898 + Tigger3(Golem) DNA MER2_type 14 1225 -1804 1340 238 21 7 chr9 32290546 32290828 -109980616 + AluJo SINE Alu 1 286 -26 8863 170 28 33 chr9 32290828 32290849 -109980595 + Tigger3(Golem) DNA MER2_type 1225 1245 -1784 1576 208 16 13 chr9 32290849 32291157 -109980287 - AluJb SINE Alu -1 311 3 8863 170 28 33 chr9 32291157 32291168 -109980276 + Tigger3(Golem) DNA MER2_type 1245 1255 -1774 282 73 0 0 chr9 32291168 32291209 -109980235 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 8863 170 28 33 chr9 32291209 32291682 -109979762 + Tigger3(Golem) DNA MER2_type 1255 1718 -1311 325 192 0 0 chr9 32291685 32291737 -109979707 + Tigger3(Golem) DNA MER2_type 2976 3027 -2 567 253 24 91 chr9 32291779 32292075 -109979369 - L1MCb LINE L1 -5436 609 334 1107 234 117 45 chr9 32292107 32292509 -109978935 + MSTB2 LTR MaLR 23 453 -4 809 274 75 60 chr9 32292515 32292847 -109978597 - L1MCb LINE L1 -5765 280 5 595 361 95 27 chr9 32292849 32293425 -109978019 - L2 LINE L2 -201 3071 2464 26 82 0 0 chr9 32294232 32294293 -109977151 + AT_rich Low_complexity Low_complexity 1 61 0 561 308 69 12 chr9 32294298 32294545 -109976899 - MIR SINE MIR 0 262 2 225 219 254 18 chr9 32295038 32295152 -109976292 - MER5A DNA MER1_type -2 187 47 21 0 0 0 chr9 32296741 32296762 -109974682 + AT_rich Low_complexity Low_complexity 1 21 0 204 277 0 0 chr9 32297445 32297528 -109973916 + (CATATA)n Simple_repeat Simple_repeat 4 86 0 26 0 0 0 chr9 32297585 32297611 -109973833 + AT_rich Low_complexity Low_complexity 1 26 0 284 303 76 95 chr9 32299177 32299441 -109972003 - MIR SINE MIR -3 259 1 248 261 11 0 chr9 32299583 32299675 -109971769 + (TATATG)n Simple_repeat Simple_repeat 3 95 0 2578 196 15 67 chr9 32299721 32300379 -109971065 - L1MB5 LINE L1 -7 6403 5780 1821 253 50 14 chr9 32300385 32301040 -109970404 - L1MB5 LINE L1 -743 5639 4980 343 322 40 66 chr9 32303326 32303599 -109967845 + L1MDa LINE L1 19 284 -6256 742 170 7 7 chr9 32303628 32303781 -109967663 + GA-rich Low_complexity Low_complexity 2 154 0 346 267 0 59 chr9 32303913 32304048 -109967396 - L1ME2 LINE L1 -73 6091 5965 280 322 107 27 chr9 32304042 32304408 -109967036 - L1MB5 LINE L1 -4885 1499 1105 * 690 306 90 29 chr9 32304395 32305033 -109966411 - L1ME LINE L1 -5113 957 283 1981 181 67 20 chr9 32305143 32305547 -109965897 + MSTC LTR MaLR 1 423 -5 350 302 55 25 chr9 32305644 32305879 -109965565 - L1MEc LINE L1 -4762 2360 2119 1828 187 20 33 chr9 32305952 32306342 -109965102 + MLT1B LTR MaLR 4 388 -2 3054 218 66 25 chr9 32306504 32307744 -109963700 - L1MB8 LINE L1 -12 6166 4869 263 316 70 29 chr9 32307858 32308130 -109963314 - L1MEc LINE L1 -4928 1495 1213 228 337 58 0 chr9 32308725 32308811 -109962633 - L1MEc LINE L1 -5985 438 348 3081 175 61 17 chr9 32308902 32309555 -109961889 - L1MA10 LINE L1 -1 6333 5652 2556 128 12 0 chr9 32309574 32309989 -109961455 - L1MA1 LINE L1 0 6302 5883 5019 87 9 1 chr9 32310566 32311260 -109960184 - L1PA7 LINE L1 -1937 4209 3511 8151 78 7 23 chr9 32311261 32313210 -109958234 + L1PA7 LINE L1 4220 6152 -2 253 228 0 0 chr9 32313232 32313289 -109958155 - L1MA10 LINE L1 -986 5373 5317 1340 97 0 0 chr9 32313568 32313754 -109957690 - L1PA7 LINE L1 -7 6147 5962 5173 66 18 0 chr9 32313754 32314502 -109956942 + L1PA7 LINE L1 5185 5944 -210 3633 229 22 15 chr9 32314499 32315805 -109955639 - L1MA1 LINE L1 -501 5667 4360 * 745 167 8 0 chr9 32315818 32315938 -109955506 - FLAM_A SINE Alu -21 121 1 1641 207 11 11 chr9 32315939 32316296 -109955148 + MER65A LTR ERV1 62 418 -27 892 51 103 0 chr9 32316294 32316411 -109955033 - MER9 LTR ERVK -382 129 1 * 2819 251 60 43 chr9 32316413 32317580 -109953864 + MER65A-int LTR ERV1 61 1247 -3624 974 210 65 96 chr9 32317608 32317740 -109953704 + MER65A-int LTR ERV1 1516 1651 -5107 2825 7 0 0 chr9 32317740 32318050 -109953394 + AluY SINE Alu 2 311 0 974 210 65 96 chr9 32318050 32318699 -109952745 + MER65A-int LTR ERV1 1651 2436 -4322 2266 102 7 3 chr9 32318768 32319073 -109952371 - AluSc SINE Alu -1 308 3 615 171 0 55 chr9 32319287 32319433 -109952011 + MER57-int LTR ERV1 705 842 -6695 254 235 39 69 chr9 32319518 32319620 -109951824 + MER57-int LTR ERV1 841 939 -4184 32 26 0 0 chr9 32319765 32319804 -109951640 + AT_rich Low_complexity Low_complexity 1 39 0 1876 121 7 4 chr9 32319806 32320079 -109951365 + AluSx SINE Alu 1 274 -38 1870 204 16 18 chr9 32320081 32320517 -109950927 + L1PB3 LINE L1 3371 3805 -2341 1165 163 37 0 chr9 32320523 32320849 -109950595 + L1PB3 LINE L1 5100 5439 -715 6216 194 108 37 chr9 32320850 32322362 -109949082 - MER52A LTR ERV1 0 1755 61 3177 137 13 109 chr9 32322397 32322681 -109948763 + L1PB3 LINE L1 5527 5708 -446 347 89 18 0 chr9 32322681 32322737 -109948707 + (TG)n Simple_repeat Simple_repeat 2 58 0 3177 137 13 109 chr9 32322737 32323137 -109948307 + L1PB3 LINE L1 5708 6145 -9 927 187 7 93 chr9 32323269 32323420 -109948024 - L1MA1 LINE L1 -1792 4354 4235 2078 120 0 0 chr9 32323420 32323738 -109947706 + AluSx SINE Alu 1 318 0 927 187 7 93 chr9 32323738 32323863 -109947581 - L1MA1 LINE L1 -1911 4235 4101 293 111 0 22 chr9 32323861 32323906 -109947538 - L1P5 LINE L1 -433 5723 5680 * 264 30 0 0 chr9 32324077 32324110 -109947334 + (CA)n Simple_repeat Simple_repeat 2 34 0 270 56 0 0 chr9 32324343 32324379 -109947065 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 2013 141 0 0 chr9 32324441 32324732 -109946712 - AluSx SINE Alu -11 301 11 1049 236 5 0 chr9 32324984 32325187 -109946257 + MER45B DNA AcHobo 4 207 -833 332 211 0 53 chr9 32325191 32325267 -109946177 + MER45B DNA AcHobo 542 613 -427 1535 284 20 36 chr9 32326061 32326610 -109944834 + MLT1F LTR MaLR 3 542 0 21 36 0 0 chr9 32326611 32326639 -109944805 + AT_rich Low_complexity Low_complexity 1 28 0 24 67 0 0 chr9 32326742 32326787 -109944657 + AT_rich Low_complexity Low_complexity 1 45 0 728 278 63 4 chr9 32327155 32327410 -109944034 + L1MCc LINE L1 206 475 -5948 * 991 271 29 20 chr9 32327409 32327752 -109943692 + L1ME1 LINE L1 5806 6151 -15 261 252 17 26 chr9 32327775 32327890 -109943554 + (TA)n Simple_repeat Simple_repeat 1 114 0 21 0 0 0 chr9 32328037 32328058 -109943386 + AT_rich Low_complexity Low_complexity 1 21 0 437 216 72 12 chr9 32328168 32328335 -109943109 + LTR50 LTR ERVL 3 177 -596 24 0 0 0 chr9 32328791 32328815 -109942629 + AT_rich Low_complexity Low_complexity 1 24 0 21 57 0 0 chr9 32329064 32329099 -109942345 + AT_rich Low_complexity Low_complexity 1 35 0 585 296 138 33 chr9 32330103 32331037 -109940407 - L1MEc LINE L1 -3935 2461 1430 1015 185 0 15 chr9 32331676 32331876 -109939568 - L1PB1 LINE L1 0 6151 5955 385 291 104 32 chr9 32332709 32332929 -109938515 - MLT1I LTR MaLR -76 333 98 570 280 103 10 chr9 32333278 32333587 -109937857 - MLT1D LTR MaLR 0 505 276 185 350 62 56 chr9 32333633 32333793 -109937651 - MIR SINE MIR -13 249 89 334 259 54 27 chr9 32335176 32335323 -109936121 + L1M4 LINE L1 4557 4707 -1439 313 291 106 17 chr9 32335409 32335646 -109935798 + L1M4 LINE L1 4943 5200 -946 24 0 0 0 chr9 32335965 32335989 -109935455 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr9 32337401 32337422 -109934022 + AT_rich Low_complexity Low_complexity 1 21 0 3020 154 24 46 chr9 32337923 32338364 -109933080 - L1P4 LINE L1 -371 5795 5378 1545 212 3 7 chr9 32338364 32338657 -109932787 - AluSx SINE Alu -17 295 4 3020 154 24 46 chr9 32338657 32339117 -109932327 - L1P4 LINE L1 -788 5378 4910 275 213 0 0 chr9 32339118 32339179 -109932265 + L1P LINE L1 4501 4561 -1585 1155 202 0 4 chr9 32339181 32339424 -109932020 + L1 LINE L1 4655 4896 -1250 661 302 83 0 chr9 32339608 32339896 -109931548 - L1M4 LINE L1 -1312 4834 4523 443 297 45 22 chr9 32339899 32340121 -109931323 - L1M4 LINE L1 -1984 4162 3936 195 184 0 0 chr9 32340121 32340159 -109931285 + (TG)n Simple_repeat Simple_repeat 2 39 0 341 237 35 35 chr9 32340159 32340273 -109931171 + L1MC4 LINE L1 6588 6701 -1341 5057 185 33 43 chr9 32340273 32340605 -109930839 - L1MA9 LINE L1 -167 6214 5880 216 0 0 0 chr9 32340605 32340629 -109930815 + (TG)n Simple_repeat Simple_repeat 2 25 0 5057 185 33 43 chr9 32340629 32342375 -109929069 - L1MA9 LINE L1 -501 5880 4162 1531 246 45 57 chr9 32342390 32342767 -109928677 - L1MA9 LINE L1 -3419 2796 2463 300 27 0 0 chr9 32342767 32342804 -109928640 + (CA)n Simple_repeat Simple_repeat 2 38 0 1531 246 45 57 chr9 32342804 32343138 -109928306 - L1MA9 LINE L1 -3752 2463 2126 1477 205 17 7 chr9 32343159 32343457 -109927987 - AluJb SINE Alu -8 304 4 1107 261 19 14 chr9 32343501 32343884 -109927560 + L1M4 LINE L1 1121 1759 -4554 297 54 54 0 chr9 32343951 32344007 -109927437 + (TA)n Simple_repeat Simple_repeat 1 59 0 36 40 0 0 chr9 32344052 32344102 -109927342 + AT_rich Low_complexity Low_complexity 1 50 0 1180 298 74 29 chr9 32344286 32344866 -109926578 + L1M4 LINE L1 3573 4178 -2204 1875 133 38 0 chr9 32344887 32345180 -109926264 + AluSx SINE Alu 1 304 -8 462 275 42 47 chr9 32345180 32345373 -109926071 + L1MC1 LINE L1 18 209 -6331 1706 218 64 8 chr9 32346123 32346595 -109924849 + L1M4 LINE L1 3520 4017 -2129 407 217 127 18 chr9 32346609 32346775 -109924669 + L1M4 LINE L1 4195 4378 -1768 4834 231 47 37 chr9 32346856 32349352 -109922092 + L1MC1 LINE L1 3961 6485 -242 2704 249 26 15 chr9 32349452 32350262 -109921182 - L1PA15-16 LINE L1 -4160 2637 1819 775 165 88 18 chr9 32350262 32350432 -109921012 - L1PA13 LINE L1 0 6163 5982 2087 260 17 11 chr9 32350445 32350968 -109920476 - L1PA15-16 LINE L1 -4981 1806 1281 2009 243 84 20 chr9 32350986 32351775 -109919669 + L1M4 LINE L1 2430 3268 -2878 1065 70 14 7 chr9 32352130 32352272 -109919172 + AluSc SINE Alu 157 299 -10 241 371 0 21 chr9 32352291 32352388 -109919056 - MIR SINE MIR -130 132 38 417 176 0 0 chr9 32353675 32353749 -109917695 + MLT1A2 LTR MaLR 6 79 -295 392 161 0 0 chr9 32353746 32353808 -109917636 - MER93b LTR ERV1 -300 73 12 * 306 50 0 0 chr9 32354957 32354997 -109916447 + (TA)n Simple_repeat Simple_repeat 1 40 0 6580 69 6 33 chr9 32355044 32356173 -109915271 + L1PA8 LINE L1 5068 6171 -1 9648 215 59 72 chr9 32357327 32360534 -109910910 - L1M1 LINE L1 -4390 3175 11 220 200 36 0 chr9 32360666 32360721 -109910723 + (TAAA)n Simple_repeat Simple_repeat 4 60 0 32 0 0 0 chr9 32360750 32360782 -109910662 + AT_rich Low_complexity Low_complexity 1 32 0 703 130 0 0 chr9 32360837 32360937 -109910507 + AluS SINE Alu 1 100 -213 2010 79 68 0 chr9 32361134 32361413 -109910031 - AluY SINE Alu -13 298 1 717 192 3 3 chr9 32362939 32363259 -109908185 + (TA)n Simple_repeat Simple_repeat 1 320 0 1482 211 21 27 chr9 32363262 32363594 -109907850 - MLT2C1 LTR ERVL -63 334 5 2186 78 25 0 chr9 32364472 32364753 -109906691 + AluY SINE Alu 1 288 -23 21 89 0 0 chr9 32365296 32365352 -109906092 + AT_rich Low_complexity Low_complexity 1 56 0 1041 67 0 0 chr9 32365383 32365517 -109905927 - L1PA7 LINE L1 -2 6152 6019 187 258 19 0 chr9 32365830 32365892 -109905552 - MIR SINE MIR -98 110 46 24 0 0 0 chr9 32366194 32366218 -109905226 + AT_rich Low_complexity Low_complexity 1 24 0 922 241 118 29 chr9 32366458 32366773 -109904671 + MER2 DNA MER2_type 2 344 0 32 0 0 0 chr9 32367273 32367305 -109904139 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr9 32367543 32367566 -109903878 + AT_rich Low_complexity Low_complexity 1 23 0 24 53 0 0 chr9 32368214 32368252 -109903192 + AT_rich Low_complexity Low_complexity 1 38 0 275 222 48 24 chr9 32368388 32368555 -109902889 + (TA)n Simple_repeat Simple_repeat 1 171 0 183 347 61 95 chr9 32368582 32368844 -109902600 - L2 LINE L2 -123 3149 2897 238 200 0 40 chr9 32369198 32369248 -109902196 + L1M3c LINE L1 120 167 -6092 4246 243 66 27 chr9 32369831 32372590 -109898854 + L1M3c LINE L1 539 3516 -2812 4077 127 6 138 chr9 32372607 32373522 -109897922 - LTR25 LTR ERV1 0 794 1 5801 195 37 17 chr9 32373523 32374835 -109896609 + L1M3c LINE L1 3515 4853 -1475 362 222 65 9 chr9 32374808 32374916 -109896528 + L1MA4 LINE L1 4461 4574 -1754 * 2940 168 58 5 chr9 32374920 32375526 -109895918 + L1MA4 LINE L1 5840 6477 -5 231 170 0 0 chr9 32375591 32375638 -109895806 + (CA)n Simple_repeat Simple_repeat 2 48 0 2485 185 17 35 chr9 32375721 32376180 -109895264 - L1MA8 LINE L1 -172 6119 5670 1922 98 14 44 chr9 32376180 32376477 -109894967 - AluSx SINE Alu -24 288 1 2485 185 17 35 chr9 32376477 32376557 -109894887 - L1MA8 LINE L1 -621 5670 5590 571 214 58 0 chr9 32376554 32376708 -109894736 + L1MA8 LINE L1 6127 6289 -2 * 421 197 0 0 chr9 32376714 32376814 -109894630 + L1ME LINE L1 5715 5814 -348 274 281 140 22 chr9 32376917 32377501 -109893943 + L1M4 LINE L1 2816 3468 -2678 753 203 61 6 chr9 32377541 32377704 -109893740 + AluJo SINE Alu 11 182 -130 234 152 0 0 chr9 32377704 32377752 -109893692 + Alu SINE Alu 86 123 -10 467 252 236 8 chr9 32377783 32378025 -109893419 + L1M4 LINE L1 3553 3849 -2297 36 23 0 0 chr9 32378903 32378946 -109892498 + AT_rich Low_complexity Low_complexity 1 43 0 22 56 0 0 chr9 32379179 32379215 -109892229 + AT_rich Low_complexity Low_complexity 1 36 0 22 35 0 0 chr9 32379332 32379361 -109892083 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr9 32380108 32380136 -109891308 + AT_rich Low_complexity Low_complexity 1 28 0 2027 196 62 35 chr9 32380998 32381462 -109889982 + MER101B LTR ERV1 94 570 0 448 168 20 10 chr9 32381484 32381585 -109889859 + GA-rich Low_complexity Low_complexity 3 104 0 2500 153 108 0 chr9 32382571 32383008 -109888436 + MER1A DNA MER1_type 2 485 -44 2249 84 0 13 chr9 32383009 32383320 -109888124 - AluY SINE Alu -4 307 1 29 70 0 0 chr9 32384155 32384212 -109887232 + AT_rich Low_complexity Low_complexity 1 57 0 186 43 0 0 chr9 32384760 32384783 -109886661 + (CCCTAA)n Simple_repeat Simple_repeat 1 23 0 2111 128 0 3 chr9 32384948 32385254 -109886190 + AluSx SINE Alu 1 305 -7 271 310 20 65 chr9 32385415 32385615 -109885829 + HAL1 LINE L1 91 281 -2226 263 289 21 35 chr9 32385616 32385758 -109885686 + HAL1 LINE L1 1238 1377 -1130 2107 107 3 7 chr9 32385883 32386172 -109885272 - AluSg SINE Alu -18 292 5 709 292 4 23 chr9 32386188 32386445 -109884999 + HAL1 LINE L1 1505 1756 -751 * 1258 181 21 60 chr9 32386439 32386770 -109884674 - L1M3 LINE L1 -494 5674 5357 2196 131 0 0 chr9 32386787 32387122 -109884322 - L1PA13 LINE L1 -6 6157 5823 4130 197 13 12 chr9 32387124 32388044 -109883400 + L1P LINE L1 3050 3970 -2176 39 50 0 0 chr9 32388440 32388500 -109882944 + AT_rich Low_complexity Low_complexity 1 60 0 11172 149 27 25 chr9 32388536 32390536 -109880908 - Tigger1 DNA MER2_type 0 2418 414 321 169 0 0 chr9 32390536 32390595 -109880849 + (CATATA)n Simple_repeat Simple_repeat 4 62 0 229 379 57 24 chr9 32391402 32391613 -109879831 - MIR SINE MIR -4 258 41 270 296 0 0 chr9 32392043 32392114 -109879330 + L1M4b LINE L1 735 805 -6054 504 264 101 76 chr9 32392541 32392881 -109878563 + L1M4b LINE L1 1188 1549 -5306 2152 114 3 0 chr9 32392881 32393180 -109878264 + AluSg SINE Alu 1 300 -10 504 264 101 76 chr9 32393180 32393403 -109878041 + L1M4b LINE L1 1549 1765 -5090 4856 169 19 13 chr9 32393408 32395018 -109876426 + L1PA15 LINE L1 4552 6165 0 229 176 29 15 chr9 32395023 32395083 -109876361 + (TA)n Simple_repeat Simple_repeat 2 65 -5 189 0 0 0 chr9 32395083 32395104 -109876340 + (TG)n Simple_repeat Simple_repeat 2 22 0 229 176 29 15 chr9 32395104 32395111 -109876333 + (TA)n Simple_repeat Simple_repeat 65 70 0 1195 264 107 15 chr9 32395112 32395570 -109875874 - MLT1D LTR MaLR -3 502 3 1116 278 30 83 chr9 32395572 32395865 -109875579 + L1M4b LINE L1 1754 2061 -4898 2081 100 17 0 chr9 32395865 32396166 -109875278 - AluSc SINE Alu -3 306 1 1116 278 30 83 chr9 32396166 32396574 -109874870 + L1M4b LINE L1 2061 2418 -4541 441 181 35 17 chr9 32396751 32396867 -109874577 + L1PA2 LINE L1 6038 6155 0 207 279 163 0 chr9 32397059 32397145 -109874299 + MIR SINE MIR 119 218 -44 4805 188 35 20 chr9 32398120 32399800 -109871644 - L1MA4 LINE L1 -51 6249 4550 6866 188 23 20 chr9 32399808 32401201 -109870243 + L1PA13 LINE L1 1037 2446 -4351 979 164 12 0 chr9 32401206 32401377 -109870067 + L1PA13 LINE L1 5985 6157 -6 3116 210 26 69 chr9 32401381 32402337 -109869107 - L1MA4 LINE L1 -1609 4537 3623 1395 249 81 20 chr9 32402494 32403085 -109868359 - L1MEc LINE L1 -3244 2971 2345 1413 274 147 27 chr9 32403100 32403625 -109867819 + MLT1E LTR MaLR 3 590 -3 301 233 38 25 chr9 32403685 32403844 -109867600 - L1MEc LINE L1 -4080 2316 2156 2656 88 0 31 chr9 32403872 32404260 -109867184 - L1PB1 LINE L1 0 6151 5776 3629 137 23 2 chr9 32404289 32405020 -109866424 - L1PB1 LINE L1 -360 5791 5039 306 274 84 73 chr9 32405134 32405271 -109866173 - HAL1 LINE L1 -1324 1183 1049 2249 57 0 27 chr9 32405271 32405570 -109865874 + AluY SINE Alu 6 296 -15 306 274 84 73 chr9 32405570 32405706 -109865738 - HAL1 LINE L1 -1458 1049 907 2704 34 0 0 chr9 32405706 32406026 -109865418 - L1PA3 LINE L1 0 6155 5836 4467 23 0 0 chr9 32406026 32406549 -109864895 + L1PA3 LINE L1 5284 5806 -349 21 0 0 0 chr9 32406936 32406957 -109864487 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 32407459 32407480 -109863964 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 32407535 32407556 -109863888 + AT_rich Low_complexity Low_complexity 1 21 0 681 166 225 0 chr9 32407860 32408029 -109863415 - MLT1E1 LTR MaLR -2 652 446 795 283 71 30 chr9 32408031 32408427 -109863017 - MER92A LTR ERV1 0 412 1 24 77 0 0 chr9 32408667 32408719 -109862725 + AT_rich Low_complexity Low_complexity 1 52 0 1467 244 11 22 chr9 32409487 32409844 -109861600 + MLT1A1 LTR MaLR 13 365 0 318 315 60 67 chr9 32410667 32411412 -109860032 - MER110-int LTR ERV1 -1665 2982 2243 1898 191 50 35 chr9 32412102 32412644 -109858800 - MLT2A2 LTR ERVL 0 554 1 26 30 0 0 chr9 32413394 32413427 -109858017 + AT_rich Low_complexity Low_complexity 1 33 0 293 348 70 18 chr9 32417530 32417757 -109853687 + MLT1L LTR MaLR 359 597 -18 19963 30 0 0 chr9 32418316 32421520 -109849924 + L1PA3 LINE L1 2945 6151 -4 22 0 0 0 chr9 32422278 32422300 -109849144 + AT_rich Low_complexity Low_complexity 1 22 0 2228 100 7 0 chr9 32422527 32422827 -109848617 + AluSq SINE Alu 1 302 -11 206 32 32 0 chr9 32422827 32422858 -109848586 + (GGAA)n Simple_repeat Simple_repeat 1 32 0 3400 167 18 10 chr9 32422896 32423524 -109847920 + MER41B LTR ERV1 1 633 -2 257 284 14 27 chr9 32424951 32425025 -109846419 + MLT1I LTR MaLR 98 170 -239 253 305 86 0 chr9 32425328 32425433 -109846011 + MLT1I LTR MaLR 294 407 -2 231 171 14 71 chr9 32425839 32425909 -109845535 - MIR SINE MIR -77 185 120 3115 32 3 0 chr9 32426344 32426722 -109844722 + L1PA2 LINE L1 5777 6155 0 28 48 0 0 chr9 32426722 32426764 -109844680 + AT_rich Low_complexity Low_complexity 1 42 0 26 64 0 0 chr9 32427159 32427206 -109844238 + AT_rich Low_complexity Low_complexity 1 47 0 225 301 106 18 chr9 32427637 32427750 -109843694 + L2 LINE L2 3190 3312 -1 271 353 82 22 chr9 32428287 32428519 -109842925 - L2 LINE L2 -464 2850 2605 29 28 0 0 chr9 32429015 32429051 -109842393 + AT_rich Low_complexity Low_complexity 1 36 0 1631 164 7 18 chr9 32429470 32429751 -109841693 + MSTB LTR MaLR 1 278 -148 1497 182 40 3 chr9 32429805 32430107 -109841337 + MSTB-int LTR MaLR 1 313 -1338 959 193 84 6 chr9 32430109 32430487 -109840957 + MSTA LTR MaLR 2 428 0 6569 217 19 14 chr9 32430489 32430559 -109840885 + MSTB-int LTR MaLR 312 380 -1271 2253 114 0 6 chr9 32430559 32430874 -109840570 + AluSp SINE Alu 1 313 0 6569 217 19 14 chr9 32430874 32432135 -109839309 + MSTB-int LTR MaLR 380 1651 0 2213 172 35 33 chr9 32432135 32432560 -109838884 + MSTB LTR MaLR 1 426 0 910 175 95 136 chr9 32432607 32433092 -109838352 - MER4C LTR ERV1 0 465 1 50 31 0 0 chr9 32434058 32434122 -109837322 + AT_rich Low_complexity Low_complexity 1 64 0 771 241 48 22 chr9 32434472 32434787 -109836657 - L1MDa LINE L1 -3940 2466 2144 4474 249 68 37 chr9 32435149 32436819 -109834625 + L1M4 LINE L1 3 1877 -4848 447 263 32 21 chr9 32436893 32437083 -109834361 + L1M4 LINE L1 1049 1240 -5302 46 45 0 0 chr9 32437083 32437150 -109834294 + AT_rich Low_complexity Low_complexity 1 67 0 254 158 73 0 chr9 32437279 32437361 -109834083 + (TA)n Simple_repeat Simple_repeat 1 88 0 250 103 0 0 chr9 32437419 32437458 -109833986 + L1MA7 LINE L1 6211 6249 -42 10444 212 32 15 chr9 32437490 32440919 -109830525 - L1MA7 LINE L1 -43 6248 2763 1188 260 112 49 chr9 32440954 32441687 -109829757 + L1M4 LINE L1 1718 2566 -4078 1812 164 30 3 chr9 32441687 32441991 -109829453 + AluSx SINE Alu 1 312 0 1188 260 112 49 chr9 32441991 32442369 -109829075 + L1M4 LINE L1 2566 2919 -3725 4776 151 15 7 chr9 32442415 32442848 -109828596 - L1PA15 LINE L1 -2 6163 5735 2529 126 87 0 chr9 32442848 32442885 -109828559 - MLT2A2 LTR ERVL -3 450 418 420 118 0 0 chr9 32442885 32442953 -109828491 + (TA)n Simple_repeat Simple_repeat 2 69 0 2529 126 87 0 chr9 32442953 32443329 -109828115 - MLT2A2 LTR ERVL -35 418 1 4776 151 15 7 chr9 32443329 32444206 -109827238 - L1PA15 LINE L1 -430 5735 4857 1696 236 53 61 chr9 32444308 32445298 -109826146 - L1MDa LINE L1 -4416 1990 827 715 239 74 0 chr9 32445298 32445474 -109825970 - LTR47A LTR ERVL 0 452 264 1763 293 94 31 chr9 32445748 32446525 -109824919 - L1MDa LINE L1 -5578 831 6 1984 113 3 67 chr9 32446989 32447316 -109824128 + AluY SINE Alu 1 306 -5 237 309 0 0 chr9 32448913 32449036 -109822408 + (TA)n Simple_repeat Simple_repeat 1 123 0 189 121 0 0 chr9 32449295 32449328 -109822116 + (CA)n Simple_repeat Simple_repeat 2 34 0 23 0 0 0 chr9 32449586 32449609 -109821835 + AT_rich Low_complexity Low_complexity 1 23 0 300 321 109 36 chr9 32451338 32451612 -109819832 - L2 LINE L2 -689 2625 2332 35 83 0 0 chr9 32452499 32452583 -109818861 + AT_rich Low_complexity Low_complexity 1 84 0 39 38 0 0 chr9 32452718 32452771 -109818673 + AT_rich Low_complexity Low_complexity 1 53 0 1500 199 86 158 chr9 32453136 32454081 -109817363 - LTR28 LTR ERV1 -1 1019 1 2183 84 0 0 chr9 32454642 32454916 -109816528 + AluSg SINE Alu 1 274 -36 246 32 0 0 chr9 32454922 32454953 -109816491 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 198 103 0 0 chr9 32455122 32455151 -109816293 + (TA)n Simple_repeat Simple_repeat 1 29 0 236 212 15 0 chr9 32455663 32455729 -109815715 + (TATATG)n Simple_repeat Simple_repeat 4 70 0 1905 187 6 2 chr9 32456478 32456825 -109814619 - MER7A DNA MER2_type 0 346 4 23 68 0 0 chr9 32456846 32456890 -109814554 + AT_rich Low_complexity Low_complexity 1 44 0 5644 135 33 3 chr9 32458246 32459122 -109812322 + THE1B-int LTR MaLR 679 1580 0 1798 148 84 26 chr9 32459122 32459466 -109811978 + THE1B LTR MaLR 1 364 0 3682 215 58 25 chr9 32459468 32460993 -109810451 - L1MA5 LINE L1 -309 6693 5122 41363 42 29 1 chr9 32461000 32466965 -109804479 + L1PA4 LINE L1 1 6131 -24 1541 82 0 0 chr9 32466965 32467159 -109804285 + AluY SINE Alu 101 294 -17 6123 242 71 17 chr9 32467912 32471539 -109799905 - L1MA5 LINE L1 -1871 4977 1153 892 319 30 0 chr9 32471782 32472048 -109799396 + LTR40a LTR ERVL 244 517 -2 1606 182 98 6 chr9 32472667 32473002 -109798442 + MLT1B LTR MaLR 20 385 -5 2243 95 7 0 chr9 32473123 32473417 -109798027 + AluSx SINE Alu 1 296 -16 425 254 116 7 chr9 32474500 32474638 -109796806 + MER21B LTR ERV1 19 171 -692 4013 119 5 5 chr9 32474752 32475367 -109796077 - L1PB2 LINE L1 -2 6149 5535 445 139 13 13 chr9 32475367 32475436 -109796008 + L1PA10 LINE L1 6085 6163 -5 1438 97 0 0 chr9 32475444 32475650 -109795794 + L1P5 LINE L1 5315 5520 -631 357 225 136 75 chr9 32475654 32475934 -109795510 - L1MEc LINE L1 -4087 2309 2013 521 288 134 16 chr9 32476148 32476707 -109794737 + L1MC/D LINE L1 5044 5665 -577 197 390 0 0 chr9 32476828 32476887 -109794557 + L2 LINE L2 2986 3044 -228 1009 217 116 31 chr9 32477219 32477546 -109793898 + MLT1A1 LTR MaLR 11 365 0 530 319 150 44 chr9 32477823 32478510 -109792934 + L1 LINE L1 3425 4184 -1962 584 218 133 37 chr9 32478605 32478981 -109792463 + L1 LINE L1 4297 4708 -1438 668 248 48 64 chr9 32479090 32479168 -109792276 - L1M1 LINE L1 -4147 3418 3340 300 91 0 0 chr9 32479168 32479212 -109792232 + (TA)n Simple_repeat Simple_repeat 1 44 0 668 248 48 64 chr9 32479212 32479552 -109791892 - L1M1 LINE L1 -4225 3340 3007 22 0 0 0 chr9 32479568 32479590 -109791854 + AT_rich Low_complexity Low_complexity 1 22 0 5202 31 0 0 chr9 32479590 32480202 -109791242 - L1PA4 LINE L1 -8 6147 5536 27 0 0 0 chr9 32481333 32481360 -109790084 + AT_rich Low_complexity Low_complexity 1 27 0 2748 7 0 0 chr9 32481458 32481761 -109789683 + AluYa5 SINE Alu 1 303 -8 974 184 11 0 chr9 32482743 32482922 -109788522 + L1PA16 LINE L1 5862 6042 -124 258 339 87 8 chr9 32482955 32483082 -109788362 + L2 LINE L2 3172 3308 -5 24 32 0 0 chr9 32483964 32483995 -109787449 + AT_rich Low_complexity Low_complexity 1 31 0 26 30 0 0 chr9 32484073 32484106 -109787338 + AT_rich Low_complexity Low_complexity 1 33 0 374 344 71 6 chr9 32484152 32484335 -109787109 - MIR SINE MIR -38 224 30 506 236 9 0 chr9 32484535 32484645 -109786799 + MLT1C LTR MaLR 357 467 0 319 295 14 65 chr9 32485400 32485539 -109785905 + MIR SINE MIR 121 252 -10 323 364 143 24 chr9 32485894 32486350 -109785094 + L2 LINE L2 1964 2473 -841 26 0 0 0 chr9 32486396 32486422 -109785022 + AT_rich Low_complexity Low_complexity 1 26 0 23 33 0 0 chr9 32486533 32486563 -109784881 + AT_rich Low_complexity Low_complexity 1 30 0 1824 246 55 8 chr9 32487888 32488346 -109783098 + L1 LINE L1 4839 5325 -821 445 138 43 0 chr9 32488346 32488440 -109783004 + L1PA13 LINE L1 6066 6163 0 1824 246 55 8 chr9 32488440 32488493 -109782951 + L1 LINE L1 5325 5374 -772 1540 130 13 0 chr9 32488486 32488724 -109782720 - L1P4 LINE L1 -348 5813 5573 * 4160 35 0 0 chr9 32488824 32489332 -109782112 + L1P LINE L1 4278 4785 -1361 309 287 70 7 chr9 32489538 32489581 -109781863 - L1MA10 LINE L1 -14 6320 6278 1094 249 105 56 chr9 32489581 32490114 -109781330 - L1ME1 LINE L1 -48 6118 5560 27 49 0 0 chr9 32490579 32490620 -109780824 + AT_rich Low_complexity Low_complexity 1 41 0 4526 200 18 16 chr9 32490623 32491390 -109780054 - L1MA7 LINE L1 -27 6264 5500 1981 151 25 25 chr9 32491390 32491754 -109779690 - THE1B LTR MaLR 0 364 1 10928 116 7 0 chr9 32491754 32493323 -109778121 - THE1B-int LTR MaLR 0 1580 1 1902 148 27 30 chr9 32493323 32493688 -109777756 - THE1B LTR MaLR 0 364 1 4526 200 18 16 chr9 32493688 32494109 -109777335 - L1MA7 LINE L1 -790 5501 5069 1222 142 5 0 chr9 32494108 32494320 -109777124 - L1MA7 LINE L1 -1398 4748 4536 * 3649 215 32 7 chr9 32494336 32495228 -109776216 - L1 LINE L1 -1101 5045 4131 35 54 0 0 chr9 32495436 32495492 -109775952 + AT_rich Low_complexity Low_complexity 1 56 0 21 89 0 0 chr9 32495825 32495881 -109775563 + AT_rich Low_complexity Low_complexity 1 56 0 435 319 172 4 chr9 32496034 32496266 -109775178 - LTR33A LTR ERVL 0 523 253 231 258 41 52 chr9 32496327 32496424 -109775020 - LTR33A LTR ERVL -393 130 35 1891 149 76 15 chr9 32496484 32496827 -109774617 + THE1B LTR MaLR 1 364 0 869 140 31 3 chr9 32497148 32497165 -109774279 + L1P5 LINE L1 5318 5333 -821 3380 156 20 34 chr9 32497165 32497502 -109773942 - L1PB3 LINE L1 -13 6141 5801 282 56 0 0 chr9 32497502 32497538 -109773906 + (TG)n Simple_repeat Simple_repeat 2 37 0 3380 156 20 34 chr9 32497538 32497571 -109773873 - L1PB3 LINE L1 -353 5801 5769 2562 37 0 0 chr9 32497571 32497867 -109773577 + AluY SINE Alu 1 296 -15 3380 156 20 34 chr9 32497867 32498147 -109773297 - L1PB3 LINE L1 -385 5769 5499 869 140 31 3 chr9 32498147 32498306 -109773138 + L1PB3 LINE L1 5333 5492 -662 21 0 0 0 chr9 32499559 32499580 -109771864 + AT_rich Low_complexity Low_complexity 1 21 0 322 223 50 79 chr9 32499586 32499725 -109771719 + L1ME LINE L1 5682 5816 -305 27 29 0 0 chr9 32500890 32500924 -109770520 + AT_rich Low_complexity Low_complexity 1 34 0 1602 186 11 0 chr9 32501216 32501495 -109769949 - LTR26 LTR ERV1 0 603 322 657 349 62 27 chr9 32503383 32503719 -109767725 + ERVL LTR ERVL 4455 4815 -949 197 32 0 32 chr9 32503719 32503750 -109767694 + (TAAAA)n Simple_repeat Simple_repeat 1 30 0 657 349 62 27 chr9 32503750 32503898 -109767546 + ERVL LTR ERVL 4815 4956 -808 719 269 55 70 chr9 32504555 32504913 -109766531 + LTR16A LTR ERVL 90 456 -1 207 139 0 0 chr9 32505000 32505036 -109766408 + (CA)n Simple_repeat Simple_repeat 2 37 0 402 205 0 13 chr9 32505666 32505744 -109765700 + AluY SINE Alu 216 292 -19 260 298 69 8 chr9 32505970 32506101 -109765343 - MIR SINE MIR -56 206 68 183 289 128 54 chr9 32506192 32506434 -109765010 - L2 LINE L2 -683 2631 2372 2328 78 0 10 chr9 32506468 32506775 -109764669 + AluSq SINE Alu 1 304 -9 420 324 48 24 chr9 32507998 32508208 -109763236 + MIR SINE MIR 48 262 0 5394 132 6 6 chr9 32508241 32509163 -109762281 - L1PA13 LINE L1 -5 6158 5227 276 91 0 0 chr9 32510536 32510580 -109760864 + (TTTTG)n Simple_repeat Simple_repeat 3 46 0 1337 245 85 76 chr9 32511556 32512426 -109759018 - LTR1B LTR ERV1 -6 1014 1 23 0 0 0 chr9 32513249 32513272 -109758172 + AT_rich Low_complexity Low_complexity 1 23 0 22 56 0 0 chr9 32513498 32513534 -109757910 + AT_rich Low_complexity Low_complexity 1 36 0 578 274 56 41 chr9 32513690 32513887 -109757557 - MIR SINE MIR -38 224 25 306 0 0 0 chr9 32513945 32513979 -109757465 + (TG)n Simple_repeat Simple_repeat 2 35 0 2411 175 39 50 chr9 32514576 32515120 -109756324 - L1MA10 LINE L1 -61 6273 5736 1627 149 8 102 chr9 32515155 32515233 -109756211 + L1M3 LINE L1 5412 5496 -838 1645 163 14 14 chr9 32515233 32515521 -109755923 - AluJb SINE Alu -18 294 7 1627 149 8 102 chr9 32515521 32515824 -109755620 + L1M3 LINE L1 5496 5757 -577 984 269 130 7 chr9 32515800 32516347 -109755097 - L1M4 LINE L1 -1368 4778 4165 * 1560 262 60 44 chr9 32516356 32517278 -109754166 - L1M4 LINE L1 -2193 3953 3010 2110 113 0 3 chr9 32517278 32517587 -109753857 - AluSg SINE Alu -2 308 1 1560 262 60 44 chr9 32517587 32517712 -109753732 - L1M4 LINE L1 -3136 3010 2889 1498 137 44 15 chr9 32517812 32518083 -109753361 - LTR26 LTR ERV1 -316 287 9 389 191 38 0 chr9 32518726 32518907 -109752537 - L1MA4A LINE L1 -23 6280 6032 223 239 0 28 chr9 32518953 32519024 -109752420 + T-rich Low_complexity Low_complexity 5 73 0 24 32 0 0 chr9 32519231 32519262 -109752182 + AT_rich Low_complexity Low_complexity 1 31 0 2387 75 0 3 chr9 32519934 32520239 -109751205 - AluY SINE Alu -2 309 6 188 111 0 83 chr9 32520263 32520299 -109751145 + L3b LINE CR1 1529 1561 -22 520 221 97 10 chr9 32520458 32520653 -109750791 - L1M4 LINE L1 -1571 4575 4364 228 212 30 15 chr9 32520720 32520786 -109750658 + (CATATA)n Simple_repeat Simple_repeat 3 69 0 3756 215 127 88 chr9 32520942 32522630 -109748814 + MER52A LTR ERV1 1 1755 0 1930 101 11 24 chr9 32522732 32523066 -109748378 - AluSx SINE Alu 0 331 2 2318 182 45 2 chr9 32523268 32523784 -109747660 + L1MB3 LINE L1 5643 6180 -3 437 136 0 0 chr9 32523870 32523936 -109747508 + AluS SINE Alu 1 66 -245 347 326 134 11 chr9 32525501 32525688 -109745756 + MIR SINE MIR 48 257 -5 1477 297 87 54 chr9 32526901 32527869 -109743575 + L1MC/D LINE L1 727 1661 -5461 222 116 0 0 chr9 32527869 32527912 -109743532 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 1477 297 87 54 chr9 32527912 32528571 -109742873 + L1MC/D LINE L1 1661 2630 -4492 1787 172 25 3 chr9 32528571 32528896 -109742548 - MER1B DNA MER1_type -2 335 4 1477 297 87 54 chr9 32528896 32529076 -109742368 + L1MC/D LINE L1 2630 2803 -4319 42 36 0 0 chr9 32529217 32529273 -109742171 + AT_rich Low_complexity Low_complexity 1 56 0 21 36 0 0 chr9 32529304 32529332 -109742112 + AT_rich Low_complexity Low_complexity 1 28 0 942 266 96 25 chr9 32529743 32530287 -109741157 + L1MC/D LINE L1 2747 3287 -3654 882 259 38 9 chr9 32530296 32530636 -109740808 + L1MC/D LINE L1 5696 6045 -896 5551 147 4 5 chr9 32530640 32531559 -109739885 + L1P LINE L1 3776 4693 -1453 400 311 81 35 chr9 32531702 32532064 -109739380 - L1M4 LINE L1 -1548 4598 4190 2210 78 0 0 chr9 32532064 32532381 -109739063 + AluY SINE Alu 1 317 0 400 311 81 35 chr9 32532381 32532674 -109738770 - L1M4 LINE L1 -1956 4190 3912 * 2779 191 63 22 chr9 32532670 32533170 -109738274 + L1MB2 LINE L1 5164 5707 -464 1965 134 69 29 chr9 32533170 32533520 -109737924 + THE1B LTR MaLR 1 364 0 2779 191 63 22 chr9 32533520 32533777 -109737667 + L1MB2 LINE L1 5707 5952 -219 2864 292 47 94 chr9 32534442 32535117 -109736327 - L1MEc LINE L1 -2093 4551 3846 1282 113 5 0 chr9 32535117 32535303 -109736141 - AluSg/x SINE Alu -1 308 122 2864 292 47 94 chr9 32535303 32536523 -109734921 - L1MEc LINE L1 -2798 3846 2625 383 330 108 35 chr9 32536536 32536990 -109734454 - L1MEc LINE L1 -5981 561 75 22 0 0 0 chr9 32538390 32538412 -109733032 + AT_rich Low_complexity Low_complexity 1 22 0 351 313 74 42 chr9 32538790 32539007 -109732437 + L1MC/D LINE L1 6089 6312 -2291 28 0 0 0 chr9 32539313 32539341 -109732103 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr9 32539395 32539423 -109732021 + AT_rich Low_complexity Low_complexity 1 28 0 359 368 7 7 chr9 32539861 32539997 -109731447 - L2 LINE L2 -469 2845 2710 1311 165 54 17 chr9 32540176 32540473 -109730971 + L1MA7 LINE L1 5984 6291 0 702 286 11 11 chr9 32540478 32540656 -109730788 + MIR SINE MIR 18 195 -67 283 315 310 0 chr9 32540752 32541158 -109730286 - L2 LINE L2 -748 2566 2035 1881 134 3 10 chr9 32541763 32542054 -109729390 - AluSx SINE Alu -20 292 4 209 95 0 24 chr9 32542190 32542232 -109729212 + (CAAAA)n Simple_repeat Simple_repeat 5 45 0 240 413 70 0 chr9 32543234 32543476 -109727968 + MIR SINE MIR 3 261 -1 6197 97 13 3 chr9 32544627 32545963 -109725481 + L1PA10 LINE L1 4821 6164 -4 672 235 59 4 chr9 32545983 32546215 -109725229 + L1ME LINE L1 5308 5553 -609 22 0 0 0 chr9 32547440 32547462 -109723982 + AT_rich Low_complexity Low_complexity 1 22 0 7476 30 6 0 chr9 32551945 32553316 -109718128 - L1PA3 LINE L1 -7 6148 4772 17870 36 0 0 chr9 32553316 32555518 -109715926 + L1P LINE L1 1521 3722 -2424 21 0 0 0 chr9 32556281 32556302 -109715142 + AT_rich Low_complexity Low_complexity 1 21 0 2274 188 19 0 chr9 32556309 32556773 -109714671 - L1MA4 LINE L1 -16 6284 5812 1102 179 44 0 chr9 32556812 32557111 -109714333 - L1MA4 LINE L1 -743 5403 5189 1089 112 0 10 chr9 32558027 32558305 -109713139 - THE1-int LTR MaLR -751 829 483 243 188 0 0 chr9 32558990 32559038 -109712406 + CT-rich Low_complexity Low_complexity 2 49 0 3565 88 10 0 chr9 32559193 32559682 -109711762 - THE1-int LTR MaLR -1085 495 2 973 320 85 54 chr9 32559781 32560194 -109711250 - HERV16 LTR ERVL -1989 3007 2609 2179 78 0 63 chr9 32560194 32560526 -109710918 - AluY SINE Alu 0 311 1 973 320 85 54 chr9 32560526 32562000 -109709444 - HERV16 LTR ERVL -2387 2609 999 536 222 23 5 chr9 32562030 32562179 -109709265 + L1MC3 LINE L1 7637 7995 0 28 29 0 0 chr9 32562216 32562251 -109709193 + AT_rich Low_complexity Low_complexity 1 35 0 221 164 0 36 chr9 32563103 32563158 -109708286 + (CATA)n Simple_repeat Simple_repeat 2 54 0 209 213 0 0 chr9 32563602 32563649 -109707795 + (TAGA)n Simple_repeat Simple_repeat 2 48 0 327 345 20 7 chr9 32565212 32565360 -109706084 - L1MEc LINE L1 -6041 355 206 22 35 0 0 chr9 32565493 32565522 -109705922 + AT_rich Low_complexity Low_complexity 1 29 0 286 218 78 63 chr9 32565545 32565687 -109705757 - L1MCc LINE L1 -4932 1491 1348 603 314 74 19 chr9 32566949 32567315 -109704129 - L1MCc LINE L1 -5406 1525 1140 261 204 41 51 chr9 32567585 32567683 -109703761 + L1MC4 LINE L1 6614 6710 -1332 1527 245 20 9 chr9 32567720 32568067 -109703377 - MLT1A1 LTR MaLR -12 353 3 772 224 87 20 chr9 32569102 32569356 -109702088 - LTR37B LTR ERV1 0 468 198 430 247 20 13 chr9 32569590 32569740 -109701704 - L1MA10 LINE L1 -8 6326 6176 339 225 22 11 chr9 32569816 32569905 -109701539 - L1M4 LINE L1 -1210 4936 4847 * 9778 105 14 7 chr9 32569891 32570402 -109701042 + L1P LINE L1 2769 3275 -2871 207 0 0 0 chr9 32570402 32570425 -109701019 + (CA)n Simple_repeat Simple_repeat 2 24 0 9778 105 14 7 chr9 32570425 32571419 -109700025 + L1P LINE L1 3275 4284 -1862 1166 233 56 50 chr9 32571564 32572035 -109699409 - L1MC/D LINE L1 -720 5446 4997 1600 204 28 45 chr9 32572035 32572432 -109699012 + MLT1B LTR MaLR 1 390 0 1166 233 56 50 chr9 32572432 32572616 -109698828 - L1MC/D LINE L1 -1169 4997 4816 924 128 0 0 chr9 32572626 32572767 -109698677 - L1PA16 LINE L1 -3 6163 6023 3848 26 2 0 chr9 32572789 32573242 -109698202 - L1PA3 LINE L1 -5 6150 5697 1347 13 0 0 chr9 32573242 32573393 -109698051 + L1PA3 LINE L1 5528 5678 -477 1272 108 16 0 chr9 32573393 32573579 -109697865 - MER9 LTR ERVK -322 189 1 309 290 40 8 chr9 32573878 32574002 -109697442 + L1ME LINE L1 5345 5472 -692 6214 29 2 2 chr9 32574758 32575733 -109695711 - L1PA3 LINE L1 -149 6006 5032 6263 24 0 0 chr9 32575733 32576477 -109694967 + L1PA3 LINE L1 4317 5060 -1086 277 224 40 0 chr9 32576480 32576556 -109694888 - L1PA16 LINE L1 -137 6029 5951 * 849 239 71 11 chr9 32576550 32576830 -109694614 - L1M4 LINE L1 -1338 4808 4512 22 0 0 0 chr9 32577190 32577212 -109694232 + AT_rich Low_complexity Low_complexity 1 22 0 1167 277 78 8 chr9 32577226 32577609 -109693835 + MER92A LTR ERV1 3 412 0 2223 94 0 3 chr9 32577702 32577999 -109693445 + AluY SINE Alu 1 296 -15 779 237 63 0 chr9 32578534 32578724 -109692720 - MER58 DNA MER1_type -121 220 19 21 36 0 0 chr9 32578784 32578812 -109692632 + AT_rich Low_complexity Low_complexity 1 28 0 332 240 62 17 chr9 32578901 32579080 -109692364 - MER53 DNA DNA 0 189 3 769 235 34 12 chr9 32579152 32579525 -109691919 - MER114 LTR ERV 0 648 241 478 197 39 31 chr9 32579633 32579760 -109691684 - MER114 LTR ERV -465 183 56 234 0 0 0 chr9 32580297 32580323 -109691121 + (TA)n Simple_repeat Simple_repeat 2 27 0 237 144 67 122 chr9 32580323 32580413 -109691031 - L1MC4 LINE L1 -1339 6703 6619 324 85 0 0 chr9 32580416 32580463 -109690981 + MADE1 DNA Mariner 33 79 -1 200 311 0 0 chr9 32580463 32580524 -109690920 + (TA)n Simple_repeat Simple_repeat 2 62 0 649 245 15 81 chr9 32580968 32581241 -109690203 + LTR41 LTR ERVL 506 760 -13 1313 330 169 13 chr9 32581255 32582151 -109689293 - L2 LINE L2 -588 2726 1692 1128 215 37 8 chr9 32582158 32582400 -109689044 + MLT1A1 LTR MaLR 113 361 -4 1022 244 30 20 chr9 32582409 32582704 -109688740 + MER89-int LTR ERV1 1361 1658 -5143 1252 92 0 0 chr9 32582760 32582933 -109688511 - AluYa5 SINE Alu -5 306 134 709 185 0 0 chr9 32584874 32585004 -109686440 + AluJb SINE Alu 182 311 -1 251 175 18 0 chr9 32585025 32585082 -109686362 + (TA)n Simple_repeat Simple_repeat 1 58 0 1335 282 144 71 chr9 32585082 32586023 -109685421 - L2 LINE L2 -1612 1702 693 21 36 0 0 chr9 32587101 32587129 -109684315 + AT_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chr9 32589696 32589727 -109681717 + AT_rich Low_complexity Low_complexity 1 31 0 279 192 0 0 chr9 32589939 32589991 -109681453 + L2 LINE L2 3262 3313 0 22 35 0 0 chr9 32590004 32590033 -109681411 + AT_rich Low_complexity Low_complexity 1 29 0 356 315 24 0 chr9 32590442 32590569 -109680875 - MLT1E1 LTR MaLR -16 533 404 243 0 0 0 chr9 32591831 32591858 -109679586 + (TTG)n Simple_repeat Simple_repeat 1 27 0 9464 44 1 0 chr9 32592058 32593215 -109678229 - L1PA5 LINE L1 -1122 5024 3867 7102 46 5 1 chr9 32593215 32594352 -109677092 + L1PA5 LINE L1 5012 6151 -3 26 0 0 0 chr9 32594352 32594378 -109677066 + AT_rich Low_complexity Low_complexity 1 26 0 231 88 0 0 chr9 32595047 32595081 -109676363 + (TG)n Simple_repeat Simple_repeat 1 34 0 299 171 66 53 chr9 32595121 32595197 -109676247 - L1MCb LINE L1 -5561 484 408 1124 234 48 7 chr9 32595197 32595466 -109675978 - MLT1B LTR MaLR 0 390 111 1241 251 61 15 chr9 32595540 32595985 -109675459 + L1ME LINE L1 1249 1868 -4558 22 0 0 0 chr9 32596003 32596025 -109675419 + AT_rich Low_complexity Low_complexity 1 22 0 1063 203 67 45 chr9 32596060 32596390 -109675054 + L1ME LINE L1 2062 2398 -4028 1164 216 68 85 chr9 32597156 32597320 -109674124 + L1ME LINE L1 5380 5545 -899 228 67 0 0 chr9 32597320 32597350 -109674094 + (CA)n Simple_repeat Simple_repeat 1 30 0 1164 216 68 85 chr9 32597350 32597795 -109673649 + L1ME LINE L1 5545 5976 -468 1268 275 56 29 chr9 32597807 32598251 -109673193 - MLT1E2 LTR MaLR 0 626 171 1589 60 0 0 chr9 32598252 32598452 -109672992 - L1PA8 LINE L1 -576 5596 5397 4076 73 3 28 chr9 32598452 32598542 -109672902 + L1PA8 LINE L1 5596 5687 -485 2066 117 7 13 chr9 32598542 32598842 -109672602 + AluY SINE Alu 1 298 -13 4076 73 3 28 chr9 32598842 32599325 -109672119 + L1PA8 LINE L1 5687 6158 -14 475 294 65 11 chr9 32599332 32599516 -109671928 - MLT1E1 LTR MaLR -404 250 57 286 325 59 44 chr9 32599647 32599935 -109671509 - MLT1G LTR MaLR -1 594 192 1136 208 4 49 chr9 32600483 32600748 -109670696 - MLT1A1 LTR MaLR 0 365 113 473 240 112 0 chr9 32600751 32600876 -109670568 + LTR52-int LTR ERVL 785 923 -2633 192 77 0 0 chr9 32603078 32603104 -109668340 + (A)n Simple_repeat Simple_repeat 1 26 0 1844 287 50 73 chr9 32603147 32603945 -109667499 + LTR52-int LTR ERVL 2246 3025 -531 243 236 9 94 chr9 32603953 32604059 -109667385 - MER76 LTR ERV -193 495 399 1303 230 78 14 chr9 32604059 32604403 -109667041 + LTR52-int LTR ERVL 3140 3505 -51 761 286 114 19 chr9 32604412 32604608 -109666836 + LTR52 LTR ERVL 2 178 -243 336 24 0 0 chr9 32604608 32604649 -109666795 + (CA)n Simple_repeat Simple_repeat 2 42 0 761 286 114 19 chr9 32604649 32604812 -109666632 + LTR52 LTR ERVL 178 395 -26 23 68 0 0 chr9 32605014 32605058 -109666386 + AT_rich Low_complexity Low_complexity 1 44 0 187 427 10 10 chr9 32606391 32606494 -109664950 + L2 LINE L2 3192 3294 -19 25 65 0 0 chr9 32606575 32606621 -109664823 + AT_rich Low_complexity Low_complexity 1 46 0 448 164 0 0 chr9 32606733 32606800 -109664644 + Tigger2 DNA MER2_type 1 67 -2651 * 2344 166 58 2 chr9 32606786 32607213 -109664231 + Tigger2 DNA MER2_type 2267 2717 -1 220 292 14 14 chr9 32607396 32607468 -109663976 + MIR3 SINE MIR 97 168 -40 576 240 27 27 chr9 32607602 32607748 -109663696 + MER58B DNA MER1_type 189 334 -7 297 0 0 0 chr9 32608706 32608739 -109662705 + (TG)n Simple_repeat Simple_repeat 2 34 0 1402 199 79 8 chr9 32609190 32609571 -109661873 - L1MA9 LINE L1 0 6312 5905 1889 182 120 5 chr9 32609579 32609963 -109661481 - MSTA LTR MaLR 0 428 1 219 36 0 0 chr9 32611309 32611337 -109660107 + (GA)n Simple_repeat Simple_repeat 1 28 0 2018 105 3 18 chr9 32611496 32611806 -109659638 + AluSx SINE Alu 1 306 0 4793 184 21 21 chr9 32611848 32613370 -109658074 - L1PA16 LINE L1 -1 6165 4643 615 139 0 0 chr9 32613375 32613476 -109657968 + MER57A-int LTR ERV1 7437 7537 0 2262 169 10 0 chr9 32613478 32613875 -109657569 + MER57A LTR ERV1 3 403 0 36 0 0 0 chr9 32614550 32614586 -109656858 + AT_rich Low_complexity Low_complexity 1 36 0 645 178 30 0 chr9 32614626 32614761 -109656683 + L1MEc LINE L1 42 180 -6243 409 326 77 0 chr9 32614897 32615093 -109656351 + L1MEc LINE L1 2684 2894 -4228 1380 195 37 45 chr9 32615125 32615503 -109655941 + L1MA8 LINE L1 5926 6291 0 611 292 105 16 chr9 32615515 32615963 -109655481 + L1MEc LINE L1 2916 3403 -3538 469 215 30 15 chr9 32615993 32616128 -109655316 + L1ME2 LINE L1 5398 5534 -628 322 273 187 0 chr9 32616179 32616318 -109655126 + L1ME2 LINE L1 6000 6164 0 276 30 0 0 chr9 32616795 32616828 -109654616 + (CA)n Simple_repeat Simple_repeat 2 34 0 189 0 0 0 chr9 32616887 32616908 -109654536 + (TATAA)n Simple_repeat Simple_repeat 5 25 0 183 282 42 14 chr9 32617149 32617220 -109654224 + L2 LINE L2 3226 3298 -15 22 0 0 0 chr9 32617665 32617687 -109653757 + AT_rich Low_complexity Low_complexity 1 22 0 532 183 0 0 chr9 32617704 32617808 -109653636 - L1PA16 LINE L1 -2 6164 6061 260 291 42 21 chr9 32618598 32618787 -109652657 + L1MEc LINE L1 3837 4029 -2912 23 0 0 0 chr9 32619126 32619149 -109652295 + AT_rich Low_complexity Low_complexity 1 23 0 215 182 23 0 chr9 32619157 32619201 -109652243 + (TA)n Simple_repeat Simple_repeat 2 46 0 2308 74 3 10 chr9 32619854 32620163 -109651281 - AluY SINE Alu -4 307 1 22 35 0 0 chr9 32620534 32620563 -109650881 + AT_rich Low_complexity Low_complexity 1 29 0 322 301 90 8 chr9 32620942 32621075 -109650369 - MIR SINE MIR -71 191 48 476 286 144 21 chr9 32621324 32622045 -109649399 + L1MEc LINE L1 4608 5417 -1524 291 318 118 20 chr9 32622305 32622500 -109648944 - L2 LINE L2 -929 2385 2172 1503 202 58 21 chr9 32622581 32622957 -109648487 - MLT1B LTR MaLR 0 390 1 350 209 0 19 chr9 32623105 32623210 -109648234 + GA-rich Low_complexity Low_complexity 2 104 0 6054 127 27 32 chr9 32623278 32624355 -109647089 - MER11C LTR ERVK 0 1071 1 1377 149 47 93 chr9 32624689 32625010 -109646434 + AluJb SINE Alu 1 306 -6 239 352 96 32 chr9 32627442 32627661 -109643783 - MIR SINE MIR -10 252 20 896 168 21 11 chr9 32627672 32627862 -109643582 - L1MA6 LINE L1 0 6300 6109 205 310 48 96 chr9 32628615 32628844 -109642600 - L2 LINE L2 -16 3297 3080 631 256 20 10 chr9 32628861 32629056 -109642388 - MER105 DNA DNA -4 200 4 184 364 35 63 chr9 32629061 32629204 -109642240 - L2 LINE L2 -259 3054 2916 205 173 25 49 chr9 32630643 32630724 -109640720 + (TA)n Simple_repeat Simple_repeat 1 79 0 365 281 138 24 chr9 32631625 32631835 -109639609 - HAL1 LINE L1 -590 1917 1684 239 286 138 20 chr9 32631893 32632089 -109639355 - HAL1 LINE L1 -902 1605 1387 386 265 101 69 chr9 32632158 32632296 -109639148 - HAL1 LINE L1 -1223 1284 1152 396 0 0 0 chr9 32632296 32632340 -109639104 + (CA)n Simple_repeat Simple_repeat 2 45 0 386 265 101 69 chr9 32632340 32632618 -109638826 - HAL1 LINE L1 -1355 1152 818 317 129 0 48 chr9 32634247 32634309 -109637135 + L1PA5 LINE L1 6083 6141 -13 380 246 26 73 chr9 32634349 32634540 -109636904 - L2 LINE L2 -36 3277 3096 655 285 95 29 chr9 32636169 32636589 -109634855 + L1ME3A LINE L1 5711 6158 -12 658 250 35 6 chr9 32637299 32637471 -109633973 - MER45A DNA AcHobo -1 177 1 1306 267 74 8 chr9 32637859 32638237 -109633207 + MLT2B1 LTR ERVL 83 485 -35 26 74 0 0 chr9 32639388 32639442 -109632002 + AT_rich Low_complexity Low_complexity 1 54 0 454 258 48 8 chr9 32640956 32641080 -109630364 - MIR SINE MIR -86 176 48 21 71 0 0 chr9 32641144 32641186 -109630258 + AT_rich Low_complexity Low_complexity 1 42 0 26 30 0 0 chr9 32641512 32641545 -109629899 + AT_rich Low_complexity Low_complexity 1 33 0 579 323 5 5 chr9 32642031 32642223 -109629221 + MIR SINE MIR 68 259 -3 369 216 0 0 chr9 32643177 32643265 -109628179 + (CATATA)n Simple_repeat Simple_repeat 2 89 0 1976 114 60 6 chr9 32643605 32643922 -109627522 - MER9 LTR ERVK 0 511 178 3880 24 2 0 chr9 32643928 32644386 -109627058 - L1PA2 LINE L1 0 6155 5697 1347 13 0 0 chr9 32644386 32644537 -109626907 + L1PA2 LINE L1 5528 5678 -477 1283 102 16 0 chr9 32644537 32644723 -109626721 - MER9 LTR ERVK -322 189 1 309 290 40 8 chr9 32645022 32645146 -109626298 + L1ME LINE L1 5345 5472 -690 1025 309 86 27 chr9 32645487 32645964 -109625480 + L1ME3 LINE L1 4964 5411 -751 333 0 0 0 chr9 32645964 32646001 -109625443 + (CA)n Simple_repeat Simple_repeat 2 38 0 1025 309 86 27 chr9 32646001 32646563 -109624881 + L1ME3 LINE L1 5411 6074 -88 594 324 152 3 chr9 32646649 32646979 -109624465 - L2 LINE L2 -698 2616 2238 26 0 0 0 chr9 32647160 32647186 -109624258 + AT_rich Low_complexity Low_complexity 1 26 0 219 69 0 0 chr9 32647284 32647313 -109624131 + (TA)n Simple_repeat Simple_repeat 1 29 0 487 230 22 7 chr9 32647753 32647892 -109623552 - Charlie1 DNA MER1_type -1 2760 2620 * 849 270 35 0 chr9 32647874 32648104 -109623340 - Charlie1 DNA MER1_type -2522 239 2 390 298 136 14 chr9 32648226 32648505 -109622939 + L1M4 LINE L1 3048 3360 -2786 1417 191 0 52 chr9 32649673 32649961 -109621483 + MER44D DNA MER2_type 156 483 -122 458 240 0 40 chr9 32650044 32650091 -109621353 + MER44D DNA MER2_type 485 532 -1955 381 43 0 0 chr9 32650091 32650138 -109621306 + (CA)n Simple_repeat Simple_repeat 2 48 0 458 240 0 40 chr9 32650138 32650215 -109621229 + MER44D DNA MER2_type 532 604 -1 2009 270 26 64 chr9 32651399 32652091 -109619353 - L1M3e LINE L1 -6358 672 7 276 111 0 0 chr9 32652136 32652181 -109619263 + (TG)n Simple_repeat Simple_repeat 2 46 0 881 283 26 29 chr9 32652186 32652532 -109618912 - L1ME LINE L1 -492 6467 6123 457 264 62 0 chr9 32652585 32652763 -109618681 - L1ME LINE L1 -1310 5631 5443 954 301 96 25 chr9 32652975 32653219 -109618225 - MER90 LTR ERV1 -79 535 310 2050 169 88 8 chr9 32653219 32653615 -109617829 - MSTA LTR MaLR 0 428 1 954 301 96 25 chr9 32653615 32653858 -109617586 - MER90 LTR ERV1 -304 310 13 375 278 71 30 chr9 32653877 32654046 -109617398 - L1ME LINE L1 -4720 2221 2046 378 0 0 0 chr9 32654049 32654091 -109617353 + (TG)n Simple_repeat Simple_repeat 2 43 0 3172 171 13 20 chr9 32654100 32654698 -109616746 - L1PA16 LINE L1 -14 6152 5559 1375 182 0 0 chr9 32654698 32654934 -109616510 + L1PA16 LINE L1 5323 5558 -607 390 295 69 34 chr9 32654965 32655239 -109616205 - L1MDb LINE L1 -5036 1908 1544 435 333 92 11 chr9 32655246 32655615 -109615829 - L1MDb LINE L1 -4897 1526 1128 318 290 56 37 chr9 32656135 32656404 -109615040 - L1MDb LINE L1 -6131 292 19 21 0 0 0 chr9 32656585 32656606 -109614838 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr9 32656691 32656721 -109614723 + AT_rich Low_complexity Low_complexity 1 30 0 678 269 76 59 chr9 32657043 32657701 -109613743 - L1ME LINE L1 -4649 1914 1246 254 370 65 0 chr9 32657716 32657824 -109613620 - L2 LINE L2 -263 3050 2936 15522 189 29 24 chr9 32657845 32657997 -109613447 + L1M1 LINE L1 13 163 -7402 2331 95 0 6 chr9 32657997 32658312 -109613132 - AluSq SINE Alu 0 313 1 15522 189 29 24 chr9 32658312 32661210 -109610234 + L1M1 LINE L1 163 3077 -4488 3305 142 25 20 chr9 32661214 32661821 -109609623 + L1MA2 LINE L1 5695 6304 0 339 189 52 7 chr9 32662464 32662617 -109608827 + (TA)n Simple_repeat Simple_repeat 2 161 0 523 346 43 31 chr9 32663167 32663491 -109607953 - HERVL LTR ERVL -1124 4530 4203 431 305 119 31 chr9 32663526 32663960 -109607484 - L1ME LINE L1 -5018 1354 945 343 265 0 12 chr9 32664877 32664960 -109606484 + MLT1H LTR MaLR 146 227 -322 24 32 0 0 chr9 32665159 32665190 -109606254 + AT_rich Low_complexity Low_complexity 1 31 0 27 81 0 0 chr9 32665520 32665582 -109605862 + AT_rich Low_complexity Low_complexity 1 62 0 1307 224 6 74 chr9 32666085 32666437 -109605007 + MLT2D LTR ERVL 5 332 -82 21 71 0 0 chr9 32666602 32666644 -109604800 + AT_rich Low_complexity Low_complexity 1 42 0 34 0 0 0 chr9 32666725 32666759 -109604685 + AT_rich Low_complexity Low_complexity 1 34 0 2944 207 34 68 chr9 32668301 32668973 -109602471 - LTR1B LTR ERV1 0 826 188 2266 78 0 0 chr9 32668973 32669256 -109602188 - AluSc SINE Alu -26 283 1 2944 207 34 68 chr9 32669256 32669438 -109602006 - LTR1B LTR ERV1 -638 188 1 645 324 50 55 chr9 32669660 32670135 -109601309 + MLT1K LTR MaLR 104 576 -12 22 0 0 0 chr9 32670315 32670337 -109601107 + AT_rich Low_complexity Low_complexity 1 22 0 307 278 83 0 chr9 32671334 32671442 -109600002 + L2 LINE L2 3197 3313 0 4736 190 50 21 chr9 32673037 32674962 -109596482 - L1MA4A LINE L1 0 7365 5390 795 251 48 116 chr9 32674965 32675467 -109595977 - MER66A LTR ERV1 -10 468 1 3521 202 16 8 chr9 32675467 32676228 -109595216 - L1MA4A LINE L1 -1813 5395 4629 593 149 6 28 chr9 32676239 32676385 -109595059 + (TA)n Simple_repeat Simple_repeat 2 145 -33 2048 140 45 28 chr9 32676385 32676741 -109594703 + THE1B LTR MaLR 3 364 0 593 149 6 28 chr9 32676741 32676775 -109594669 + (TA)n Simple_repeat Simple_repeat 145 178 0 422 179 0 0 chr9 32676852 32676919 -109594525 - MER66B LTR ERV1 -10 476 410 306 0 0 0 chr9 32676952 32676986 -109594458 + (TA)n Simple_repeat Simple_repeat 1 34 0 323 161 0 12 chr9 32677100 32677181 -109594263 + (TA)n Simple_repeat Simple_repeat 2 81 0 6073 219 45 35 chr9 32677221 32680557 -109590887 - L1MA4A LINE L1 -2589 4619 689 245 290 161 0 chr9 32682476 32682569 -109588875 - L1ME LINE L1 -537 5584 5477 25 51 0 0 chr9 32682676 32682715 -109588729 + AT_rich Low_complexity Low_complexity 1 39 0 345 296 142 28 chr9 32683030 32683354 -109588090 - L1ME LINE L1 -1440 4706 4346 40 67 0 0 chr9 32683407 32683482 -109587962 + AT_rich Low_complexity Low_complexity 1 75 0 204 97 0 0 chr9 32685268 32685299 -109586145 + (CAT)n Simple_repeat Simple_repeat 3 33 0 759 152 22 60 chr9 32685648 32685832 -109585612 - L1MA8 LINE L1 -3 6288 6112 1076 206 12 16 chr9 32685841 32686088 -109585356 + L1 LINE L1 3663 3908 -2238 920 103 5 32 chr9 32687211 32687396 -109584048 + (TA)n Simple_repeat Simple_repeat 1 180 0 225 0 0 0 chr9 32687407 32687432 -109584012 + (TCTA)n Simple_repeat Simple_repeat 2 26 0 284 339 45 9 chr9 32688005 32688117 -109583327 - L2 LINE L2 -2 3311 3196 22 0 0 0 chr9 32688360 32688382 -109583062 + AT_rich Low_complexity Low_complexity 1 22 0 261 0 0 0 chr9 32689266 32689295 -109582149 + (TA)n Simple_repeat Simple_repeat 2 30 0 260 295 95 0 chr9 32689435 32689530 -109581914 - MLT1I LTR MaLR -54 355 252 29 28 0 0 chr9 32690056 32690092 -109581352 + AT_rich Low_complexity Low_complexity 1 36 0 192 323 129 26 chr9 32690136 32690291 -109581153 - MIR SINE MIR -14 248 78 22 56 0 0 chr9 32690732 32690768 -109580676 + AT_rich Low_complexity Low_complexity 1 36 0 258 232 34 45 chr9 32691786 32691963 -109579481 + (TA)n Simple_repeat Simple_repeat 1 175 0 648 280 103 45 chr9 32692374 32692770 -109578674 - LTR52 LTR ERVL 0 421 3 352 164 0 0 chr9 32692772 32692833 -109578611 - LTR52-int LTR ERVL 0 3556 3496 976 210 25 22 chr9 32693105 32693365 -109578079 + MLT2B3 LTR ERVL 1 252 -201 6533 184 62 65 chr9 32693400 32695049 -109576395 - MER52A LTR ERV1 0 1755 1 1193 209 24 37 chr9 32695049 32695337 -109576107 + MLT2B3 LTR ERVL 266 549 -5 206 310 0 0 chr9 32695644 32695715 -109575729 + T-rich Low_complexity Low_complexity 1 71 0 1421 286 69 15 chr9 32695715 32696194 -109575250 - LTR52-int LTR ERVL -3050 506 2 793 248 92 50 chr9 32696202 32696605 -109574839 - LTR52 LTR ERVL 0 421 2 189 147 0 0 chr9 32696651 32696685 -109574759 + (CTA)n Simple_repeat Simple_repeat 2 35 0 285 316 66 26 chr9 32696715 32696867 -109574577 - MIR SINE MIR 0 262 105 309 240 177 0 chr9 32699195 32699291 -109572153 - L1ME LINE L1 -568 5598 5486 21 0 0 0 chr9 32699770 32699791 -109571653 + AT_rich Low_complexity Low_complexity 1 21 0 1747 203 44 5 chr9 32701114 32701498 -109569946 - L1P LINE L1 -1909 4237 3839 1137 213 66 41 chr9 32701489 32702055 -109569389 - L1 LINE L1 -3778 3787 3210 * 1073 153 86 10 chr9 32702060 32702269 -109569175 + MSTA LTR MaLR 1 225 -203 763 288 23 0 chr9 32702307 32702526 -109568918 - MER58A DNA MER1_type 0 224 1 183 186 0 0 chr9 32703801 32703844 -109567600 + (CA)n Simple_repeat Simple_repeat 1 43 0 27 62 0 0 chr9 32704190 32704238 -109567206 + AT_rich Low_complexity Low_complexity 1 48 0 276 259 82 52 chr9 32704466 32704601 -109566843 - L2 LINE L2 -237 3035 2897 2401 179 100 26 chr9 32704727 32705257 -109566187 + MER101B LTR ERV1 1 569 -1 447 323 82 32 chr9 32705335 32705614 -109565830 - LTR16C LTR ERVL -11 480 188 24 32 0 0 chr9 32705925 32705956 -109565488 + AT_rich Low_complexity Low_complexity 1 31 0 611 63 0 0 chr9 32706733 32706812 -109564632 + MADE1 DNA Mariner 1 79 -1 333 253 0 33 chr9 32708001 32708092 -109563352 - L2 LINE L2 -3 3269 3182 21 95 0 0 chr9 32708269 32708332 -109563112 + AT_rich Low_complexity Low_complexity 1 63 0 252 329 105 49 chr9 32708553 32708878 -109562566 - L1ME3A LINE L1 -234 5936 5594 238 189 54 72 chr9 32708934 32709045 -109562399 + L1M4 LINE L1 3878 3986 -2160 623 313 155 34 chr9 32710715 32711153 -109560291 - L2 LINE L2 0 3313 2823 4742 185 23 26 chr9 32712421 32713746 -109557698 + L1MA9 LINE L1 4457 5776 -515 1204 186 17 24 chr9 32713786 32714082 -109557362 + L1MA9 LINE L1 6019 6312 0 28 0 0 0 chr9 32714630 32714658 -109556786 + AT_rich Low_complexity Low_complexity 1 28 0 742 286 108 25 chr9 32714993 32715392 -109556052 - MLT1J1 LTR MaLR -14 432 1 22 56 0 0 chr9 32715611 32715647 -109555797 + AT_rich Low_complexity Low_complexity 1 36 0 21 57 0 0 chr9 32715874 32715909 -109555535 + AT_rich Low_complexity Low_complexity 1 35 0 29 47 0 0 chr9 32716019 32716062 -109555382 + AT_rich Low_complexity Low_complexity 1 43 0 21 36 0 0 chr9 32716373 32716401 -109555043 + AT_rich Low_complexity Low_complexity 1 28 0 2293 75 3 3 chr9 32716401 32716709 -109554735 - AluSx SINE Alu 0 312 5 956 265 133 88 chr9 32717547 32717793 -109553651 - MLT1E LTR MaLR -2 591 357 260 27 27 0 chr9 32717793 32717830 -109553614 + (GTTTG)n Simple_repeat Simple_repeat 2 39 0 956 265 133 88 chr9 32717830 32718149 -109553295 - MLT1E LTR MaLR -236 357 1 31 0 0 0 chr9 32718899 32718930 -109552514 + AT_rich Low_complexity Low_complexity 1 31 0 281 291 74 29 chr9 32719726 32719901 -109551543 - L1ME LINE L1 -341 5780 5598 576 126 0 21 chr9 32720305 32720400 -109551044 - L1MA3 LINE L1 -10 6295 6203 43122 46 2 1 chr9 32720710 32726863 -109544581 - L1PA3 LINE L1 0 6155 1 22 56 0 0 chr9 32728832 32728868 -109542576 + AT_rich Low_complexity Low_complexity 1 36 0 456 239 60 0 chr9 32728868 32729002 -109542442 - L1MA7 LINE L1 -3 6288 6147 1481 216 14 11 chr9 32729022 32729309 -109542135 + LTR57 LTR ERVL 82 369 -42 459 317 55 0 chr9 32729992 32730156 -109541288 + MIR SINE MIR 90 262 0 23 0 0 0 chr9 32730563 32730586 -109540858 + AT_rich Low_complexity Low_complexity 1 23 0 234 319 28 0 chr9 32731242 32731314 -109540130 + MIR SINE MIR 56 129 -133 26 30 0 0 chr9 32731636 32731669 -109539775 + AT_rich Low_complexity Low_complexity 1 33 0 306 331 59 35 chr9 32732676 32732845 -109538599 - MLT1I LTR MaLR -163 246 74 2617 181 7 44 chr9 32733600 32734168 -109537276 + MER44D DNA MER2_type 4 605 0 582 288 55 64 chr9 32734223 32735039 -109536405 - L1M4 LINE L1 -1901 4245 3437 197 65 32 0 chr9 32735039 32735070 -109536374 + (TTTTC)n Simple_repeat Simple_repeat 2 33 0 237 264 72 24 chr9 32736460 32736585 -109534859 - L1M4 LINE L1 -2690 3456 3326 573 236 51 19 chr9 32736715 32736872 -109534572 - L1ME1 LINE L1 -134 6032 5871 1652 238 35 42 chr9 32736977 32737495 -109533949 - L1ME1 LINE L1 -265 5901 5388 355 265 54 48 chr9 32737549 32737696 -109533748 + MLT1H LTR MaLR 3 150 -399 1575 329 137 18 chr9 32737734 32738781 -109532663 + L2 LINE L2 1876 3054 -259 217 274 151 0 chr9 32738899 32738972 -109532472 + L2 LINE L2 3230 3313 0 883 255 139 19 chr9 32741263 32741679 -109529765 - MER69 DNA AcHobo -26 2500 2035 309 291 71 0 chr9 32741699 32741826 -109529618 - MER69 DNA AcHobo -1958 568 433 5431 176 29 18 chr9 32742072 32743135 -109528309 + L1MC1 LINE L1 5255 6333 0 213 39 0 0 chr9 32743173 32743199 -109528245 + (TC)n Simple_repeat Simple_repeat 1 26 0 229 283 0 0 chr9 32743476 32743536 -109527908 + (CATATA)n Simple_repeat Simple_repeat 1 60 0 189 411 11 0 chr9 32743855 32743945 -109527499 - L2 LINE L2 -2 3270 3180 233 196 36 0 chr9 32745168 32745224 -109526220 + (TAGA)n Simple_repeat Simple_repeat 1 58 0 1585 199 38 0 chr9 32745944 32746236 -109525208 + AluJo SINE Alu 2 304 -8 25 75 0 0 chr9 32746242 32746295 -109525149 + AT_rich Low_complexity Low_complexity 1 53 0 264 296 69 94 chr9 32746930 32747023 -109524421 + MIR SINE MIR 47 141 -121 3200 139 11 19 chr9 32747023 32747554 -109523890 + MER1A DNA MER1_type 1 527 0 264 296 69 94 chr9 32747554 32747663 -109523781 + MIR SINE MIR 141 244 -18 355 278 19 49 chr9 32748161 32748247 -109523197 - LTR43 LTR ERV1 -311 291 211 3823 131 18 5 chr9 32748247 32748848 -109522596 + MER4B LTR ERV1 2 610 0 355 278 19 49 chr9 32748848 32748923 -109522521 - LTR43 LTR ERV1 -391 211 135 286 346 171 26 chr9 32749216 32749707 -109521737 - L2 LINE L2 -1753 1561 1000 256 369 46 8 chr9 32753135 32753265 -109518179 + L2 LINE L2 3179 3313 0 29 47 0 0 chr9 32753347 32753390 -109518054 + AT_rich Low_complexity Low_complexity 1 43 0 1117 281 68 5 chr9 32753523 32753591 -109517853 - L1ME LINE L1 -379 5785 5723 1811 73 0 12 chr9 32753591 32753837 -109517607 + L1PA8 LINE L1 5924 6166 -6 1117 281 68 5 chr9 32753837 32754212 -109517232 - L1ME LINE L1 -441 5723 5314 383 315 66 69 chr9 32754423 32754728 -109516716 - L1MDa LINE L1 -4869 1671 1368 804 57 24 0 chr9 32754777 32754900 -109516544 + (TCTA)n Simple_repeat Simple_repeat 4 129 0 801 259 64 66 chr9 32754944 32755368 -109516076 - L1ME2 LINE L1 -141 6023 5601 1711 69 0 2 chr9 32755370 32755659 -109515785 + THE1A LTR MaLR 1 355 0 10804 109 29 5 chr9 32755659 32757196 -109514248 + THE1A-int LTR MaLR 1 1574 -6 2430 117 3 0 chr9 32757203 32757555 -109513889 + THE1A LTR MaLR 3 355 0 300 323 45 0 chr9 32757569 32757702 -109513742 - L1ME2 LINE L1 -574 5590 5452 180 0 0 0 chr9 32758503 32758523 -109512921 + (TTTTTG)n Simple_repeat Simple_repeat 5 24 0 286 192 20 26 chr9 32758554 32758637 -109512807 - MLT1G LTR MaLR 0 590 464 218 81 27 0 chr9 32759388 32759425 -109512019 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 240 211 0 0 chr9 32759777 32759848 -109511596 + GA-rich Low_complexity Low_complexity 2 72 0 3937 210 45 18 chr9 32760722 32761561 -109509883 - MER21B LTR ERV1 -1 862 1 364 355 15 21 chr9 32761794 32761943 -109509501 + MIR3 SINE MIR 19 168 -40 1148 294 92 24 chr9 32762192 32763467 -109507977 + L1M4 LINE L1 2469 3830 -2316 4973 157 12 26 chr9 32763485 32764390 -109507054 + L1MA4 LINE L1 5351 6244 -56 2221 109 0 0 chr9 32764390 32764694 -109506750 + AluSq SINE Alu 1 304 -9 4973 157 12 26 chr9 32764694 32764751 -109506693 + L1MA4 LINE L1 6244 6300 0 247 307 43 49 chr9 32764816 32764979 -109506465 + L1M4 LINE L1 3986 4147 -1999 533 259 30 76 chr9 32765113 32765426 -109506018 + L1MC4 LINE L1 6500 6872 -1021 210 71 0 0 chr9 32766116 32766144 -109505300 + (TAA)n Simple_repeat Simple_repeat 1 28 0 23 0 0 0 chr9 32766532 32766555 -109504889 + AT_rich Low_complexity Low_complexity 1 23 0 2258 101 13 0 chr9 32766645 32766953 -109504491 + AluSx SINE Alu 1 312 0 764 254 30 57 chr9 32769203 32769537 -109501907 - L1ME2 LINE L1 -1 6163 5839 6749 236 45 32 chr9 32769891 32770424 -109501020 - L1MC1 LINE L1 0 7144 6619 2350 49 0 0 chr9 32770424 32770734 -109500710 + AluY SINE Alu 1 310 0 6749 236 45 32 chr9 32770734 32773512 -109497932 - L1MC1 LINE L1 -525 6619 3690 1992 148 101 3 chr9 32773516 32773881 -109497563 - L1PA16 LINE L1 -22 6144 5744 325 150 30 158 chr9 32773863 32773917 -109497527 + L1P4 LINE L1 5632 5661 -505 * 1565 187 17 23 chr9 32773917 32774217 -109497227 + AluJb SINE Alu 2 299 -13 325 150 30 158 chr9 32774217 32774295 -109497149 + L1P4 LINE L1 5661 5747 -419 * 1615 272 51 23 chr9 32774288 32775069 -109496375 - L1MC1 LINE L1 -3254 3703 2939 358 286 71 8 chr9 32775549 32775667 -109495777 - MLT1J LTR MaLR -287 198 42 22 0 0 0 chr9 32776157 32776179 -109495265 + AT_rich Low_complexity Low_complexity 1 22 0 1402 246 62 74 chr9 32776486 32777349 -109494095 - L1MC1 LINE L1 -4767 2192 1343 223 146 100 0 chr9 32777372 32777482 -109493962 + (TA)n Simple_repeat Simple_repeat 1 121 0 341 253 100 53 chr9 32777485 32777635 -109493809 - L1MC1 LINE L1 -5499 1360 1204 1452 330 62 17 chr9 32778220 32778801 -109492643 - L1MC1 LINE L1 -5980 879 273 1321 237 30 25 chr9 32778804 32779171 -109492273 - MLT1A2 LTR MaLR 0 374 6 1940 230 38 2 chr9 32779176 32779594 -109491850 - MLT1A2-int LTR MaLR 0 1735 1303 235 224 0 92 chr9 32779595 32779671 -109491773 + MLT-int LTR MaLR 943 1011 -724 27 0 0 0 chr9 32780844 32780871 -109490573 + AT_rich Low_complexity Low_complexity 1 27 0 2345 60 0 0 chr9 32780915 32781234 -109490210 - AluY SINE Alu 0 319 1 229 250 50 0 chr9 32781422 32781482 -109489962 + MLT1J1 LTR MaLR 269 331 -115 557 320 73 43 chr9 32781844 32782404 -109489040 + L1M4 LINE L1 57 633 -5909 1771 351 79 23 chr9 32782908 32784056 -109487388 + L2 LINE L2 1790 2998 -315 257 385 0 56 chr9 32784095 32784290 -109487154 + MER5A DNA MER1_type 6 189 0 23 33 0 0 chr9 32784506 32784536 -109486908 + AT_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chr9 32786356 32786386 -109485058 + AT_rich Low_complexity Low_complexity 1 30 0 2123 139 12 14 chr9 32786510 32786854 -109484590 + MER61A LTR ERV1 1 343 0 2710 189 74 104 chr9 32786854 32787655 -109483789 + MER61A-int LTR ERV1 1 777 -4440 * 3219 111 18 14 chr9 32787648 32788197 -109483247 + MER61A-int LTR ERV1 1320 1917 -3300 * 16559 101 10 13 chr9 32788193 32790894 -109480550 + MER61A-int LTR ERV1 2477 5215 -2 2106 142 30 0 chr9 32790898 32791229 -109480215 + MER61A LTR ERV1 3 343 0 7578 25 3 0 chr9 32792325 32793459 -109477985 - L1PA5 LINE L1 -6 6148 5012 3066 40 3 0 chr9 32793459 32793831 -109477613 + L1P LINE L1 3867 4239 -1907 399 303 32 32 chr9 32793838 32793993 -109477451 - MIR SINE MIR -74 188 34 203 414 19 19 chr9 32795887 32796044 -109475400 + L2 LINE L2 2896 3052 -261 433 124 11 11 chr9 32796230 32796319 -109475125 + (TGGA)n Simple_repeat Simple_repeat 4 92 0 2366 53 40 7 chr9 32797688 32797989 -109473455 + AluY SINE Alu 1 311 0 414 259 144 0 chr9 32798732 32798871 -109472573 + MER46C DNA MER2_type 179 337 -1 338 308 77 65 chr9 32799407 32799514 -109471930 - L1MEd LINE L1 -5096 1023 919 2171 115 16 0 chr9 32799514 32799819 -109471625 - AluSq SINE Alu -3 310 1 338 308 77 65 chr9 32799819 32800049 -109471395 - L1MEd LINE L1 -5200 919 682 1983 140 0 3 chr9 32800711 32801004 -109470440 + AluSx SINE Alu 3 294 -18 25 31 0 0 chr9 32801791 32801823 -109469621 + AT_rich Low_complexity Low_complexity 1 32 0 2285 177 14 23 chr9 32802379 32802814 -109468630 + Tigger2a DNA MER2_type 1 431 -3 1504 153 102 28 chr9 32803007 32803366 -109468078 - Tigger3(Golem) DNA MER2_type 0 3029 1 26 0 0 0 chr9 32803463 32803489 -109467955 + AT_rich Low_complexity Low_complexity 1 26 0 398 329 81 6 chr9 32803657 32803818 -109467626 + LTR33 LTR ERVL 10 182 -339 314 334 89 44 chr9 32804309 32804647 -109466797 + L2 LINE L2 2346 2698 -616 1941 80 98 4 chr9 32807187 32807462 -109463982 + AluSq SINE Alu 1 301 -12 1059 296 101 52 chr9 32807935 32808672 -109462772 - L1M4 LINE L1 -1836 4310 3611 2386 46 0 0 chr9 32808672 32808983 -109462461 + AluY SINE Alu 1 311 0 1059 296 101 52 chr9 32808983 32809813 -109461631 - L1M4 LINE L1 -2535 3611 2665 284 333 0 0 chr9 32809832 32809946 -109461498 - L1M4 LINE L1 -3551 2595 2482 880 315 50 0 chr9 32809950 32810229 -109461215 - LTR16A LTR ERVL 0 450 158 538 300 82 25 chr9 32810343 32810696 -109460748 - L1M4 LINE L1 -3661 2485 2113 36 87 0 0 chr9 32810828 32810920 -109460524 + AT_rich Low_complexity Low_complexity 1 92 0 273 143 0 0 chr9 32811358 32811407 -109460037 - L1PA10 LINE L1 -1100 5046 4998 6382 91 17 0 chr9 32811408 32812514 -109458930 + L1PA10 LINE L1 5048 6168 0 22 0 0 0 chr9 32812585 32812607 -109458837 + AT_rich Low_complexity Low_complexity 1 22 0 1836 179 60 45 chr9 32812615 32813100 -109458344 + LTR22B LTR ERVK 1 492 0 14608 216 31 18 chr9 32813245 32815441 -109456003 - L1PA15 LINE L1 -3 6813 4647 2131 97 10 13 chr9 32815441 32815750 -109455694 - AluSc SINE Alu -1 308 1 14608 216 31 18 chr9 32815750 32816021 -109455423 - L1PA15 LINE L1 -2169 4647 4381 423 0 0 0 chr9 32816021 32816068 -109455376 + (TG)n Simple_repeat Simple_repeat 2 48 0 14608 216 31 18 chr9 32816068 32819147 -109452297 - L1PA15 LINE L1 -2435 4381 1189 28 0 0 0 chr9 32819695 32819723 -109451721 + AT_rich Low_complexity Low_complexity 1 28 0 23 68 0 0 chr9 32819900 32819944 -109451500 + AT_rich Low_complexity Low_complexity 1 44 0 356 321 87 46 chr9 32820062 32820365 -109451079 + L1ME LINE L1 5257 5574 -590 1014 101 0 0 chr9 32820459 32820598 -109450846 - AluSg/x SINE Alu 0 312 174 1757 153 0 0 chr9 32820598 32820860 -109450584 - AluSx SINE Alu -48 264 3 303 304 46 0 chr9 32820863 32820989 -109450455 + L1ME LINE L1 5701 5831 -347 636 206 71 0 chr9 32821056 32821182 -109450262 - Tigger2 DNA MER2_type -11 2707 2573 63 57 0 0 chr9 32821182 32821287 -109450157 + AT_rich Low_complexity Low_complexity 1 105 0 1157 189 97 23 chr9 32821318 32821577 -109449867 - Tigger2 DNA MER2_type -150 2568 2291 273 213 0 93 chr9 32821580 32821655 -109449789 - Tigger2 DNA MER2_type -2650 68 1 180 0 0 0 chr9 32823542 32823562 -109447882 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 351 60 0 0 chr9 32823907 32823957 -109447487 + (CA)n Simple_repeat Simple_repeat 2 51 0 502 330 76 39 chr9 32823957 32824440 -109447004 - HERV16 LTR ERVL -1462 3570 3142 452 305 8 8 chr9 32824693 32824821 -109446623 - HERV16 LTR ERVL -3195 1801 1674 296 179 0 0 chr9 32824824 32824891 -109446553 - L1PA16 LINE L1 -1 6165 6099 637 336 47 45 chr9 32824972 32825528 -109445916 - HERV16 LTR ERVL -3502 1494 938 291 398 31 0 chr9 32825738 32825934 -109445510 - HERV16 LTR ERVL -4332 664 463 681 267 30 72 chr9 32826914 32827277 -109444167 - MLT1C LTR MaLR -114 353 6 440 318 4 64 chr9 32827338 32827571 -109443873 - L1ME LINE L1 -5842 228 10 199 297 27 0 chr9 32827638 32827712 -109443732 + MER5A DNA MER1_type 37 112 -77 230 180 16 0 chr9 32828081 32828142 -109443302 + (TTA)n Simple_repeat Simple_repeat 3 64 0 529 86 21 0 chr9 32828879 32828972 -109442472 + (TCTA)n Simple_repeat Simple_repeat 3 97 0 388 256 17 61 chr9 32829585 32829765 -109441679 + L1MC5 LINE L1 7730 7901 -60 201 342 18 18 chr9 32829841 32829955 -109441489 + L2 LINE L2 2458 2571 -743 225 85 34 34 chr9 32830149 32830208 -109441236 + (TTATA)n Simple_repeat Simple_repeat 1 59 0 357 93 0 0 chr9 32830266 32830320 -109441124 + (TAGA)n Simple_repeat Simple_repeat 1 54 0 269 155 17 0 chr9 32830363 32830421 -109441023 + (TA)n Simple_repeat Simple_repeat 2 60 0 583 350 78 69 chr9 32830540 32831412 -109440032 + L2 LINE L2 2375 3269 -44 1277 203 11 36 chr9 32831416 32831697 -109439747 + AluJo SINE Alu 21 294 -18 59 38 0 0 chr9 32831862 32831942 -109439502 + AT_rich Low_complexity Low_complexity 1 80 0 513 215 0 0 chr9 32831942 32832176 -109439268 + (TA)n Simple_repeat Simple_repeat 1 234 0 361 147 16 54 chr9 32832477 32832661 -109438783 + (TATAA)n Simple_repeat Simple_repeat 1 177 0 268 260 158 0 chr9 32832878 32833005 -109438439 + LTR37A LTR ERV1 81 227 -199 542 273 53 0 chr9 32833042 32833229 -109438215 + LTR37A LTR ERV1 225 421 -5 1801 222 126 54 chr9 32833511 32834196 -109437248 + MER50 LTR ERV1 1 734 0 1686 176 3 0 chr9 32834755 32835059 -109436385 - AluJb SINE Alu 0 307 3 864 237 73 40 chr9 32835503 32835777 -109435667 - MLT1D LTR MaLR -7 498 216 438 198 25 0 chr9 32835791 32835888 -109435556 - MLT1D LTR MaLR -398 107 5 22 70 0 0 chr9 32836055 32836098 -109435346 + AT_rich Low_complexity Low_complexity 1 43 0 871 212 64 134 chr9 32836705 32837112 -109434332 - MLT1C LTR MaLR -4 448 11 23 0 0 0 chr9 32837296 32837319 -109434125 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr9 32837587 32837612 -109433832 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr9 32838795 32838818 -109432626 + AT_rich Low_complexity Low_complexity 1 23 0 1960 171 16 60 chr9 32838925 32838965 -109432479 - MLT2D LTR ERVL 0 414 374 303 28 0 0 chr9 32838965 32839001 -109432443 + (TG)n Simple_repeat Simple_repeat 1 36 0 1960 171 16 60 chr9 32839001 32839393 -109432051 - MLT2D LTR ERVL -40 374 1 1842 253 23 7 chr9 32839549 32839992 -109431452 - MER82 DNA MER2_type -8 645 196 198 103 0 0 chr9 32840017 32840046 -109431398 + (CA)n Simple_repeat Simple_repeat 1 29 0 1122 203 0 0 chr9 32840046 32840243 -109431201 - MER82 DNA MER2_type -450 203 7 641 304 121 48 chr9 32841024 32841521 -109429923 - MLT1H LTR MaLR 0 549 17 220 255 0 0 chr9 32843029 32843080 -109428364 + (TCCA)n Simple_repeat Simple_repeat 3 53 0 24 0 0 0 chr9 32843574 32843598 -109427846 + AT_rich Low_complexity Low_complexity 1 24 0 3645 159 12 37 chr9 32844066 32845381 -109426063 - L1MA4 LINE L1 -311 5989 4704 1026 244 93 4 chr9 32845595 32845841 -109425603 - MLT1A1 LTR MaLR -95 270 3 1094 244 80 14 chr9 32846100 32846387 -109425057 + MLT1A1 LTR MaLR 57 362 -3 2986 95 18 14 chr9 32847553 32847995 -109423449 - MLT2A1 LTR ERVL 0 444 1 700 230 17 91 chr9 32848540 32848770 -109422674 - MER20 DNA MER1_type 0 219 7 230 260 0 0 chr9 32849331 32849381 -109422063 + (TATATG)n Simple_repeat Simple_repeat 2 51 0 200 111 0 28 chr9 32849796 32849832 -109421612 + (GAAAA)n Simple_repeat Simple_repeat 2 36 0 401 239 120 85 chr9 32849993 32850252 -109421192 + L1MC4 LINE L1 7739 8006 -36 1039 203 4 22 chr9 32850257 32850484 -109420960 - AluJo SINE Alu -6 306 84 3442 198 66 42 chr9 32850524 32851402 -109420042 + L1MB3 LINE L1 5285 6183 0 814 195 115 102 chr9 32851685 32852069 -109419375 + MLT1C LTR MaLR 1 389 -1 491 133 0 0 chr9 32852331 32852406 -109419038 + MADE1 DNA Mariner 1 75 -5 213 39 0 0 chr9 32852908 32852934 -109418510 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 346 347 62 14 chr9 32855678 32855822 -109415622 + MIR3 SINE MIR 45 195 -13 397 288 31 56 chr9 32856858 32857018 -109414426 - MIR SINE MIR -28 234 79 21 0 0 0 chr9 32857090 32857111 -109414333 + AT_rich Low_complexity Low_complexity 1 21 0 236 250 28 14 chr9 32857206 32857278 -109414166 + (TATG)n Simple_repeat Simple_repeat 2 74 0 244 363 0 52 chr9 32858071 32858206 -109413238 - MIR SINE MIR -129 133 6 23 0 0 0 chr9 32858922 32858945 -109412499 + AT_rich Low_complexity Low_complexity 1 23 0 2197 132 92 2 chr9 32860528 32860921 -109410523 - MSTA LTR MaLR 0 428 1 2020 204 52 2 chr9 32861062 32861468 -109409976 - MSTB LTR MaLR 0 426 1 348 325 83 40 chr9 32861571 32861873 -109409571 + L1MC4 LINE L1 7722 8036 -6 346 286 118 16 chr9 32861888 32862133 -109409311 + L1MC5 LINE L1 7508 7777 -184 256 333 0 0 chr9 32862443 32862518 -109408926 - MIR SINE MIR -127 135 61 295 368 46 62 chr9 32862521 32862828 -109408616 - MLT1I LTR MaLR -107 302 1 21 0 0 0 chr9 32863110 32863131 -109408313 + AT_rich Low_complexity Low_complexity 1 21 0 236 299 30 15 chr9 32863538 32863605 -109407839 - L2 LINE L2 -19 3253 3186 33 32 0 32 chr9 32864720 32864753 -109406691 + AT_rich Low_complexity Low_complexity 1 33 -27 2048 130 7 0 chr9 32864753 32865046 -109406398 + AluSx SINE Alu 1 295 -17 33 32 0 32 chr9 32865046 32865074 -109406370 + AT_rich Low_complexity Low_complexity 33 60 0 1522 213 52 56 chr9 32865360 32865387 -109406057 + MLT1C LTR MaLR 1 27 -440 261 0 0 0 chr9 32865387 32865416 -109406028 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 1522 213 52 56 chr9 32865416 32865480 -109405964 + MLT1C LTR MaLR 27 90 -377 1596 221 34 0 chr9 32865480 32865833 -109405611 - MLT1A1 LTR MaLR 0 365 1 1522 213 52 56 chr9 32865833 32866205 -109405239 + MLT1C LTR MaLR 90 463 -4 31 26 0 0 chr9 32866644 32866682 -109404762 + AT_rich Low_complexity Low_complexity 1 38 0 31 92 0 0 chr9 32867085 32867172 -109404272 + AT_rich Low_complexity Low_complexity 1 87 0 24 0 0 0 chr9 32867515 32867539 -109403905 + AT_rich Low_complexity Low_complexity 1 24 0 1397 226 34 0 chr9 32867667 32867964 -109403480 + AluJb SINE Alu 1 307 -5 252 59 0 0 chr9 32867967 32868001 -109403443 + (GGAA)n Simple_repeat Simple_repeat 4 37 0 311 265 114 30 chr9 32868289 32868421 -109403023 + MLT1K LTR MaLR 165 307 -281 262 282 0 24 chr9 32869683 32869768 -109401676 + Charlie7 DNA MER1_type 23 105 -2507 3125 158 68 10 chr9 32870335 32870925 -109400519 + L1PA16 LINE L1 5543 6166 0 398 396 7 0 chr9 32871663 32871802 -109399642 + L2 LINE L2 3123 3262 -10 470 339 113 17 chr9 32874862 32875101 -109396343 - L2 LINE L2 -537 2777 2516 305 273 0 50 chr9 32875615 32875704 -109395740 + L1MC4 LINE L1 6614 6699 -1343 189 0 0 0 chr9 32875704 32875725 -109395719 + (CA)n Simple_repeat Simple_repeat 2 22 0 6174 150 65 9 chr9 32875853 32877016 -109394428 - Tigger3b DNA MER2_type -2 1229 1 24 0 0 0 chr9 32877132 32877156 -109394288 + AT_rich Low_complexity Low_complexity 1 24 0 5741 108 35 1 chr9 32877156 32878823 -109392621 + L1PA11 LINE L1 4462 6166 -8 6273 174 119 93 chr9 32878948 32880641 -109390803 + MER52A LTR ERV1 2 1739 -16 186 103 0 0 chr9 32880737 32880766 -109390678 + (TA)n Simple_repeat Simple_repeat 1 29 0 337 270 72 7 chr9 32880779 32880931 -109390513 - L1MEc LINE L1 -2471 3744 3583 406 228 49 0 chr9 32880951 32881113 -109390331 + (TA)n Simple_repeat Simple_repeat 1 170 0 1168 265 58 51 chr9 32881152 32881982 -109389462 - L1MEc LINE L1 -2673 3542 2707 1598 295 61 7 chr9 32882012 32882914 -109388530 - L1MEc LINE L1 -3705 2510 1587 843 276 70 47 chr9 32882923 32883368 -109388076 + MLT1C LTR MaLR 9 463 -4 2700 276 72 55 chr9 32883410 32884930 -109386514 - L1MEc LINE L1 -4815 1581 37 891 192 129 17 chr9 32885326 32885613 -109385831 + MER33 DNA MER1_type 6 324 0 481 251 153 16 chr9 32885645 32885828 -109385616 - MER58A DNA MER1_type -15 209 2 365 333 69 0 chr9 32885875 32886034 -109385410 + MLT1J LTR MaLR 336 505 -6 192 97 0 0 chr9 32886621 32886652 -109384792 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 7534 25 0 0 chr9 32886652 32887780 -109383664 - L1PA3 LINE L1 -6 6149 5016 204 232 84 74 chr9 32888084 32888179 -109383265 - MIR SINE MIR -68 194 99 22 0 0 0 chr9 32889103 32889125 -109382319 + AT_rich Low_complexity Low_complexity 1 22 0 369 245 0 0 chr9 32889281 32889383 -109382061 + (TA)n Simple_repeat Simple_repeat 2 103 0 26 30 0 0 chr9 32889575 32889608 -109381836 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr9 32890739 32890760 -109380684 + AT_rich Low_complexity Low_complexity 1 21 0 1007 245 60 10 chr9 32890774 32891072 -109380372 + L1MCa LINE L1 1288 1600 -4826 1518 211 63 16 chr9 32891187 32891363 -109380081 + MLT1B LTR MaLR 1 167 -223 261 0 0 0 chr9 32891363 32891392 -109380052 + (TC)n Simple_repeat Simple_repeat 2 30 0 1518 211 63 16 chr9 32891392 32891580 -109379864 + MLT1B LTR MaLR 167 382 -8 7581 25 2 0 chr9 32891603 32893045 -109378399 + L1PA3 LINE L1 4709 6152 -3 277 49 0 49 chr9 32893107 32893148 -109378296 + THE1C LTR MaLR 1 39 -336 206 62 31 0 chr9 32893148 32893180 -109378264 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 250 103 11 69 chr9 32893186 32893273 -109378171 + (TATAA)n Simple_repeat Simple_repeat 5 86 0 12897 212 97 14 chr9 32893292 32898401 -109373043 - L1PBa LINE L1 -1113 5749 60 3794 150 79 15 chr9 32898369 32899029 -109372415 - THE1-int LTR MaLR -623 957 256 * 3083 230 88 19 chr9 32899554 32900290 -109371154 + L1MD2 LINE L1 5352 6036 -1749 243 0 0 0 chr9 32900290 32900317 -109371127 + (CA)n Simple_repeat Simple_repeat 2 28 0 3083 230 88 19 chr9 32900317 32900487 -109370957 + L1MD2 LINE L1 6036 7747 -38 28 116 0 0 chr9 32900797 32900944 -109370500 + AT_rich Low_complexity Low_complexity 1 147 0 188 268 0 0 chr9 32901031 32901072 -109370372 + L2 LINE L2 3189 3229 -84 24 77 0 0 chr9 32901784 32901836 -109369608 + AT_rich Low_complexity Low_complexity 1 52 0 1112 246 56 34 chr9 32902385 32902742 -109368702 + MLT1A1 LTR MaLR 1 365 0 2790 269 91 26 chr9 32902744 32903906 -109367538 + L1MEc LINE L1 34 1271 -5125 22 80 0 0 chr9 32904884 32904934 -109366510 + AT_rich Low_complexity Low_complexity 1 50 0 408 40 0 0 chr9 32905088 32905138 -109366306 + (CA)n Simple_repeat Simple_repeat 1 50 0 231 346 31 8 chr9 32905216 32905343 -109366101 - L1ME LINE L1 -297 5824 5695 230 320 97 0 chr9 32905675 32905778 -109365666 + L2 LINE L2 3181 3293 -20 353 325 43 24 chr9 32906873 32907059 -109364385 + MIR SINE MIR 50 236 -26 22 0 0 0 chr9 32907733 32907755 -109363689 + AT_rich Low_complexity Low_complexity 1 22 0 1499 186 54 0 chr9 32907757 32908036 -109363408 + AluJb SINE Alu 1 294 -18 288 177 44 51 chr9 32908214 32908372 -109363072 + (TTTA)n Simple_repeat Simple_repeat 3 159 0 1297 270 41 24 chr9 32908688 32909263 -109362181 - MER76 LTR ERV 0 688 47 21 36 0 0 chr9 32910584 32910612 -109360832 + AT_rich Low_complexity Low_complexity 1 28 0 277 364 17 0 chr9 32910787 32910960 -109360484 - L1MD3 LINE L1 -12 7983 7808 22 0 0 0 chr9 32910972 32910994 -109360450 + AT_rich Low_complexity Low_complexity 1 22 0 499 218 58 89 chr9 32911084 32912047 -109359397 - L1MD2 LINE L1 -165 6077 5189 1910 152 53 31 chr9 32912646 32913002 -109358442 + THE1B LTR MaLR 1 364 0 10699 107 29 1 chr9 32913002 32914539 -109356905 + THE1B-int LTR MaLR 1 1580 0 1719 182 106 0 chr9 32914539 32914868 -109356576 + THE1B LTR MaLR 1 364 0 206 132 38 19 chr9 32915308 32915361 -109356083 + (TTTAA)n Simple_repeat Simple_repeat 5 58 0 21 0 0 0 chr9 32915789 32915810 -109355634 + AT_rich Low_complexity Low_complexity 1 21 0 1210 198 14 0 chr9 32915974 32916191 -109355253 + L1PA14 LINE L1 1 220 -7361 1135 94 65 6 chr9 32916203 32916373 -109355071 + L1PA12 LINE L1 1964 2143 -5438 14235 181 13 14 chr9 32916373 32918098 -109353346 + L1PA14 LINE L1 215 1939 -5645 1568 189 73 14 chr9 32918098 32918452 -109352992 - THE1C LTR MaLR 0 375 1 14235 181 13 14 chr9 32918452 32920213 -109351231 + L1PA14 LINE L1 1939 3979 -3605 5859 116 7 2 chr9 32920213 32921632 -109349812 + L1PA14 LINE L1 6167 7599 0 2085 131 0 19 chr9 32921851 32922165 -109349279 + AluSx SINE Alu 1 308 -4 1960 117 17 8 chr9 32923855 32924306 -109347138 - L1PA12 LINE L1 -604 5564 5109 3578 122 35 0 chr9 32924306 32924859 -109346585 + L1PA12 LINE L1 5579 6164 -4 25 65 0 0 chr9 32926441 32926487 -109344957 + AT_rich Low_complexity Low_complexity 1 46 0 21 0 0 0 chr9 32927824 32927845 -109343599 + AT_rich Low_complexity Low_complexity 1 21 0 439 305 18 66 chr9 32927958 32928101 -109343343 + MIR SINE MIR 4 152 -110 1546 191 0 38 chr9 32928101 32928270 -109343174 - AluJo SINE Alu -4 308 134 230 0 33 0 chr9 32928270 32928300 -109343144 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 2302 85 0 3 chr9 32928300 32928583 -109342861 - AluSq SINE Alu -29 284 3 1546 191 0 38 chr9 32928583 32928731 -109342713 - AluJo SINE Alu -176 136 2 439 305 18 66 chr9 32928731 32928859 -109342585 + MIR SINE MIR 152 262 0 2690 206 55 26 chr9 32929382 32930581 -109340863 + L1M2 LINE L1 4295 5598 -714 38 39 0 0 chr9 32930871 32930923 -109340521 + AT_rich Low_complexity Low_complexity 1 52 0 25 31 0 0 chr9 32931846 32931878 -109339566 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr9 32932744 32932765 -109338679 + AT_rich Low_complexity Low_complexity 1 21 0 271 296 57 0 chr9 32932923 32933011 -109338433 - MIR SINE MIR -76 186 94 1806 216 7 39 chr9 32933012 32933451 -109337993 - L1MA10 LINE L1 -39 6295 5871 * 2539 195 12 51 chr9 32933450 32934358 -109337086 + L1MB1 LINE L1 4960 5836 -332 19991 54 1 12 chr9 32934363 32937756 -109333688 - L1PA4 LINE L1 0 6155 2786 8067 86 31 0 chr9 32937772 32938857 -109332587 - L1PA4 LINE L1 -5015 1131 13 2866 221 51 34 chr9 32938942 32939712 -109331732 - L1MD1 LINE L1 0 6242 5460 28515 134 13 57 chr9 32939874 32945359 -109326085 + L1PA8 LINE L1 1 5146 -1026 219 36 0 0 chr9 32945359 32945387 -109326057 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 28515 134 13 57 chr9 32945387 32946362 -109325082 + L1PA8 LINE L1 5146 6163 -9 2924 242 11 14 chr9 32946713 32947514 -109323930 + L1 LINE L1 4314 5112 -1034 1402 164 128 2 chr9 32947523 32947896 -109323548 - L1PB1 LINE L1 -700 5603 5187 2981 92 23 138 chr9 32947897 32948061 -109323383 + L1PB1 LINE L1 5611 5792 -359 324 0 0 0 chr9 32948061 32948097 -109323347 + (CA)n Simple_repeat Simple_repeat 2 37 0 497 75 21 21 chr9 32948098 32948192 -109323252 + (TA)n Simple_repeat Simple_repeat 1 94 0 2981 92 23 138 chr9 32948192 32948635 -109322809 + L1PB1 LINE L1 5791 6150 -1 2793 200 10 2 chr9 32948671 32949349 -109322095 + L1PA16 LINE L1 5106 5787 -379 9066 190 17 19 chr9 32949350 32952258 -109319186 + L1PB3 LINE L1 3261 6154 0 1922 202 18 0 chr9 32952267 32952648 -109318796 + L1PA16 LINE L1 5779 6166 0 27 49 0 0 chr9 32953152 32953193 -109318251 + AT_rich Low_complexity Low_complexity 1 41 0 1552 186 4 18 chr9 32954264 32954543 -109316901 + AluJb SINE Alu 1 275 -37 294 206 0 0 chr9 32954548 32954611 -109316833 + G-rich Low_complexity Low_complexity 5 67 0 722 354 116 42 chr9 32954612 32955127 -109316317 - L2 LINE L2 -410 2904 2428 1516 142 36 47 chr9 32955127 32955401 -109316043 + AluSx SINE Alu 3 273 -39 722 354 116 42 chr9 32955401 32956009 -109315435 - L2 LINE L2 -886 2428 1698 299 286 103 8 chr9 32956655 32956781 -109314663 - MIR SINE MIR -122 140 3 385 391 103 26 chr9 32956856 32957470 -109313974 - L2 LINE L2 -2341 973 313 189 0 0 0 chr9 32958608 32958629 -109312815 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 1612 172 0 0 chr9 32958640 32958907 -109312537 - AluSx SINE Alu -45 267 1 248 343 0 0 chr9 32961007 32961080 -109310364 + MIR SINE MIR 82 154 -108 180 200 0 0 chr9 32961269 32961309 -109310135 + (CATATA)n Simple_repeat Simple_repeat 6 45 0 1674 163 0 42 chr9 32961337 32961463 -109309981 + AluJb SINE Alu 17 147 -165 2506 64 0 0 chr9 32961463 32961774 -109309670 + AluY SINE Alu 1 311 0 1674 163 0 42 chr9 32961774 32961954 -109309490 + AluJb SINE Alu 147 310 -2 2133 109 0 20 chr9 32963442 32963797 -109307647 - AluSx SINE Alu 0 349 1 2426 51 6 10 chr9 32964219 32964555 -109306889 + AluY SINE Alu 1 335 0 307 333 16 0 chr9 32965511 32965634 -109305810 + MIR3 SINE MIR 74 198 -10 2257 88 0 0 chr9 32967016 32967313 -109304131 - AluY SINE Alu -14 297 1 225 0 0 0 chr9 32967468 32967493 -109303951 + (A)n Simple_repeat Simple_repeat 1 25 0 141 53 0 0 chr9 32968480 32968705 -109302739 + AT_rich Low_complexity Low_complexity 1 225 0 21 36 0 0 chr9 32968945 32968973 -109302471 + AT_rich Low_complexity Low_complexity 1 28 0 1029 103 13 0 chr9 32970525 32970681 -109300763 + L1PA10 LINE L1 5995 6152 -16 25 31 0 0 chr9 32970685 32970717 -109300727 + AT_rich Low_complexity Low_complexity 1 32 0 2261 95 0 7 chr9 32970899 32971204 -109300240 - AluY SINE Alu -8 303 1 216 0 0 0 chr9 32971692 32971716 -109299728 + (CA)n Simple_repeat Simple_repeat 2 25 0 1540 189 0 21 chr9 32971860 32972141 -109299303 + AluJb SINE Alu 6 280 -32 234 0 0 0 chr9 32972141 32972167 -109299277 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 215 194 16 16 chr9 32972322 32972384 -109299060 + (TA)n Simple_repeat Simple_repeat 2 63 0 216 277 15 0 chr9 32973923 32973988 -109297456 - MIR SINE MIR -59 203 138 855 155 0 27 chr9 32974073 32974221 -109297223 + AluJo SINE Alu 9 152 -160 273 119 0 0 chr9 32974240 32974282 -109297162 + (A)n Simple_repeat Simple_repeat 1 42 0 225 178 0 0 chr9 32974906 32974951 -109296493 + LTR66 LTR ERVL 394 438 -172 345 186 10 21 chr9 32974987 32975084 -109296360 + (TA)n Simple_repeat Simple_repeat 1 96 0 209 285 16 98 chr9 32976179 32976302 -109295142 - MIR SINE MIR -12 250 138 200 246 15 46 chr9 32976339 32976404 -109295040 + L2 LINE L2 2556 2618 -696 548 295 57 9 chr9 32976847 32977057 -109294387 - L2 LINE L2 0 3313 3094 21 0 0 0 chr9 32977313 32977334 -109294110 + AT_rich Low_complexity Low_complexity 1 21 0 203 297 31 0 chr9 32977398 32977462 -109293982 + L2 LINE L2 3207 3272 0 529 287 33 15 chr9 32977785 32978053 -109293391 + L1MCa LINE L1 1662 1982 -4444 22 35 0 0 chr9 32978198 32978227 -109293217 + AT_rich Low_complexity Low_complexity 1 29 0 257 105 0 0 chr9 32978394 32978432 -109293012 + tRNA-Leu-TTG tRNA tRNA 1 38 -48 238 171 13 13 chr9 32979497 32979573 -109291871 + (TA)n Simple_repeat Simple_repeat 1 76 0 22 35 0 0 chr9 32979788 32979817 -109291627 + AT_rich Low_complexity Low_complexity 1 29 0 390 239 11 0 chr9 32980120 32980212 -109291232 - MER94 DNA DNA -41 93 1 288 0 0 0 chr9 32980338 32980370 -109291074 + (TG)n Simple_repeat Simple_repeat 2 33 0 29 60 0 0 chr9 32980540 32980590 -109290854 + AT_rich Low_complexity Low_complexity 1 50 0 216 293 0 127 chr9 32981511 32981668 -109289776 - MIR SINE MIR -77 185 49 335 184 32 165 chr9 32982142 32982300 -109289144 + MER20 DNA MER1_type 1 137 -82 1830 151 10 13 chr9 32982708 32983013 -109288431 + AluSx SINE Alu 1 304 -8 201 121 0 0 chr9 32983533 32983566 -109287878 + (A)n Simple_repeat Simple_repeat 1 33 0 21 36 0 0 chr9 32983959 32983987 -109287457 + AT_rich Low_complexity Low_complexity 1 28 0 6825 202 22 13 chr9 32984910 32986481 -109284963 - L1PB1 LINE L1 -1591 4555 2971 3401 164 33 6 chr9 32986482 32987657 -109283787 + L1PB1 LINE L1 4585 5791 -360 237 156 47 0 chr9 32987676 32987740 -109283704 - L1MC4 LINE L1 -1339 6703 6637 273 221 0 0 chr9 32987742 32987810 -109283634 + (TA)n Simple_repeat Simple_repeat 2 69 0 2157 136 14 8 chr9 32987813 32988173 -109283271 + L1PB1 LINE L1 5787 6148 -3 1772 180 0 20 chr9 32988209 32988338 -109283106 + AluSx SINE Alu 1 131 -181 181 0 33 33 chr9 32988338 32988368 -109283076 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1772 180 0 20 chr9 32988368 32988544 -109282900 + AluSx SINE Alu 131 300 -12 207 100 0 0 chr9 32988544 32988574 -109282870 + (GA)n Simple_repeat Simple_repeat 1 30 0 297 244 173 12 chr9 32988595 32988763 -109282681 - L1MC4 LINE L1 -2287 5521 5327 21 0 0 0 chr9 32988995 32989016 -109282428 + AT_rich Low_complexity Low_complexity 1 21 0 320 324 9 18 chr9 32989220 32989331 -109282113 + MIR SINE MIR 36 145 -63 206 279 238 7 chr9 32989501 32989648 -109281796 + MIR SINE MIR 72 252 -10 639 182 25 0 chr9 32989703 32989862 -109281582 + GA-rich Low_complexity Low_complexity 3 165 0 636 185 17 8 chr9 32990145 32990264 -109281180 - AluJb SINE Alu -40 272 153 242 196 0 0 chr9 32990321 32990367 -109281077 + (TG)n Simple_repeat Simple_repeat 2 47 0 328 160 67 40 chr9 32991346 32991421 -109280023 - AluJ/FRAM SINE Alu 0 302 226 1252 205 47 12 chr9 32991424 32991560 -109279884 - AluJb SINE Alu -49 263 133 207 0 0 0 chr9 32991560 32991583 -109279861 + (TG)n Simple_repeat Simple_repeat 2 24 0 1252 205 47 12 chr9 32991583 32991700 -109279744 - AluJb SINE Alu -179 133 1 1300 130 0 19 chr9 32992157 32992365 -109279079 + L1PA15 LINE L1 5962 6165 0 232 341 34 11 chr9 32993654 32993742 -109277702 + L2 LINE L2 3224 3313 0 852 151 63 0 chr9 32994378 32994537 -109276907 - L1MA5 LINE L1 -6 6294 6126 2373 92 0 0 chr9 32995553 32995858 -109275586 - AluSq SINE Alu -8 305 1 6690 66 5 2 chr9 32996331 32997564 -109273880 + L1PA7 LINE L1 4921 6168 0 24 53 0 0 chr9 32998042 32998080 -109273364 + AT_rich Low_complexity Low_complexity 1 38 0 2378 97 0 0 chr9 33000633 33000941 -109270503 - AluSc SINE Alu -1 308 1 953 50 0 0 chr9 33002200 33002320 -109269124 - L1PA4 LINE L1 0 6155 6036 6352 39 7 0 chr9 33002420 33003195 -109268249 - L1PA4 LINE L1 -122 6033 5254 11609 40 0 1 chr9 33003208 33004643 -109266801 + L1P LINE L1 2974 4407 -1739 22 35 0 0 chr9 33005554 33005583 -109265861 + AT_rich Low_complexity Low_complexity 1 29 0 384 40 0 0 chr9 33006302 33006352 -109265092 + (CA)n Simple_repeat Simple_repeat 1 50 0 266 49 0 24 chr9 33006921 33006962 -109264482 + (TTTTA)n Simple_repeat Simple_repeat 1 40 0 42832 57 16 1 chr9 33006962 33012995 -109258449 - L1PA3 LINE L1 -24 6131 1 1635 196 3 69 chr9 33013410 33013802 -109257642 + MER47A DNA MER2_type 1 366 0 2317 151 61 37 chr9 33015095 33015584 -109255860 + L1MA7 LINE L1 5782 6282 -9 1752 156 4 4 chr9 33015659 33015934 -109255510 + AluSx SINE Alu 1 275 -37 228 301 128 23 chr9 33016680 33016813 -109254631 - LTR67 LTR ERVL -248 309 163 369 283 40 11 chr9 33016956 33017133 -109254311 - MER113 DNA MER1_type? -339 182 1 180 0 0 0 chr9 33019020 33019040 -109252404 + (A)n Simple_repeat Simple_repeat 1 20 0 229 91 73 73 chr9 33019485 33019540 -109251904 - L1M2c LINE L1 -4781 2008 1954 197 119 24 0 chr9 33020954 33020996 -109250448 + (CA)n Simple_repeat Simple_repeat 2 44 0 1633 91 4 4 chr9 33021488 33021718 -109249726 + AluY SINE Alu 72 301 -10 359 310 21 7 chr9 33021778 33021920 -109249524 + L1M4 LINE L1 2 145 -6397 2732 155 33 51 chr9 33021969 33022881 -109248563 - MER52C LTR ERV1 -1 1277 303 241 253 159 60 chr9 33023088 33023270 -109248174 + L1M4 LINE L1 340 539 -6003 * 487 228 24 0 chr9 33023269 33023396 -109248048 - L1 LINE L1 -2455 3691 3562 * 1651 176 26 31 chr9 33023393 33024916 -109246528 + L1PB4 LINE L1 4592 6153 -3 2528 101 3 0 chr9 33024976 33025334 -109246110 + L1PB1 LINE L1 5787 6145 -6 255 79 0 0 chr9 33027775 33027813 -109243631 + (CA)n Simple_repeat Simple_repeat 2 39 0 768 353 106 30 chr9 33027982 33028760 -109242684 - L2 LINE L2 0 3313 2456 928 311 153 24 chr9 33028760 33029481 -109241963 - L2 LINE L2 -988 2326 1513 784 304 127 15 chr9 33029513 33029977 -109241467 - L2 LINE L2 -2427 887 372 24 32 0 0 chr9 33030986 33031017 -109240427 + AT_rich Low_complexity Low_complexity 1 31 0 921 299 70 24 chr9 33032600 33032974 -109238470 + LTR16A LTR ERVL 60 450 0 204 400 19 9 chr9 33033397 33033502 -109237942 + MIR SINE MIR 1 106 -156 35 54 0 0 chr9 33034161 33034217 -109237227 + AT_rich Low_complexity Low_complexity 1 56 0 838 236 4 36 chr9 33034307 33034532 -109236912 + MER20 DNA MER1_type 2 219 0 291 28 0 0 chr9 33035368 33035404 -109236040 + (TG)n Simple_repeat Simple_repeat 2 37 0 23 33 0 0 chr9 33035436 33035466 -109235978 + AT_rich Low_complexity Low_complexity 1 30 0 5121 152 19 8 chr9 33036324 33037414 -109234030 - L1P4 LINE L1 -649 5514 4413 21 0 0 0 chr9 33039350 33039371 -109232073 + AT_rich Low_complexity Low_complexity 1 21 0 906 326 38 30 chr9 33039659 33040132 -109231312 - HERV16 LTR ERVL -4214 782 306 236 254 15 0 chr9 33040169 33040236 -109231208 - L1MC/D LINE L1 -758 5575 5508 22 70 0 0 chr9 33040319 33040362 -109231082 + AT_rich Low_complexity Low_complexity 1 43 0 27 0 0 0 chr9 33041611 33041638 -109229806 + AT_rich Low_complexity Low_complexity 1 27 0 2230 111 16 81 chr9 33041680 33042112 -109229332 - L1PA13 LINE L1 -3 6160 5757 3873 101 7 2 chr9 33042112 33042666 -109228778 + L1PA12 LINE L1 5347 5903 -265 6581 240 104 26 chr9 33042719 33044191 -109227253 + L1MD1 LINE L1 14 1369 -5171 237 65 0 0 chr9 33044191 33044222 -109227222 + (CA)n Simple_repeat Simple_repeat 2 32 0 6581 240 104 26 chr9 33044222 33044961 -109226483 + L1MD1 LINE L1 1369 2416 -4124 578 193 114 0 chr9 33044961 33045075 -109226369 + FLAM_C SINE Alu 1 127 -6 6581 240 104 26 chr9 33045075 33045171 -109226273 + L1MD1 LINE L1 2416 2503 -4037 2661 107 12 12 chr9 33045186 33045588 -109225856 + L1P4 LINE L1 5398 5799 -362 3386 222 73 23 chr9 33045827 33046607 -109224837 + L1MD1 LINE L1 5377 6237 -399 2220 130 28 3 chr9 33046607 33046962 -109224482 - THE1B LTR MaLR 0 364 1 3386 222 73 23 chr9 33046962 33047383 -109224061 + L1MD1 LINE L1 6237 6636 0 21 36 0 0 chr9 33047477 33047505 -109223939 + AT_rich Low_complexity Low_complexity 1 28 0 1728 188 0 0 chr9 33047505 33047813 -109223631 - AluJb SINE Alu -3 309 2 21 36 0 0 chr9 33048704 33048732 -109222712 + AT_rich Low_complexity Low_complexity 1 28 0 3342 114 4 0 chr9 33049844 33050354 -109221090 - L1P LINE L1 -758 5388 4877 5008 77 36 0 chr9 33050354 33051070 -109220374 + L1PA7 LINE L1 5438 6154 0 216 255 0 0 chr9 33052019 33052070 -109219374 + (CA)n Simple_repeat Simple_repeat 2 52 0 189 0 0 0 chr9 33052987 33053008 -109218436 + (CA)n Simple_repeat Simple_repeat 2 22 0 2063 99 24 10 chr9 33054156 33054448 -109216996 - AluSx SINE Alu -16 296 1 21 0 0 0 chr9 33055088 33055109 -109216335 + AT_rich Low_complexity Low_complexity 1 21 0 2095 136 0 10 chr9 33055128 33055430 -109216014 + AluSg SINE Alu 1 299 -11 25 0 0 0 chr9 33056282 33056307 -109215137 + AT_rich Low_complexity Low_complexity 1 25 0 3128 148 45 42 chr9 33058107 33058700 -109212744 + MER7C DNA MER2_type 1 595 -7 804 256 128 25 chr9 33059020 33059457 -109211987 + Charlie1b DNA MER1_type 41 522 -1 195 42 0 0 chr9 33060796 33060820 -109210624 + (TTCC)n Simple_repeat Simple_repeat 4 27 0 200 259 0 17 chr9 33060922 33060980 -109210464 + CT-rich Low_complexity Low_complexity 4 60 0 201 336 78 16 chr9 33060980 33061108 -109210336 + MIR SINE MIR 77 212 -50 276 53 0 0 chr9 33062536 33062574 -109208870 + (CA)n Simple_repeat Simple_repeat 1 38 0 899 251 96 12 chr9 33062574 33062909 -109208535 + L1MC1 LINE L1 4260 4622 -1524 257 127 0 36 chr9 33062941 33062961 -109208483 - L1 LINE L1 -1298 4848 4829 4487 172 33 7 chr9 33062961 33063843 -109207601 + L1MC1 LINE L1 5424 6328 -5 257 127 0 36 chr9 33063843 33063877 -109207567 - L1 LINE L1 -1317 4829 4796 6306 90 7 21 chr9 33063877 33064854 -109206590 + L1PA10 LINE L1 5188 6151 -17 539 214 57 52 chr9 33064869 33065098 -109206346 + L1ME1 LINE L1 5651 5880 -286 718 146 24 8 chr9 33065159 33065282 -109206162 - L1PA16 LINE L1 -313 5853 5729 3248 137 41 60 chr9 33065328 33065964 -109205480 - L1PA16 LINE L1 -4 6162 5539 380 322 45 6 chr9 33065965 33066142 -109205302 + L1ME1 LINE L1 5978 6161 -5 215 367 13 0 chr9 33066478 33066557 -109204887 - L2 LINE L2 -17 3296 3217 327 268 34 34 chr9 33067187 33067268 -109204176 + (TA)n Simple_repeat Simple_repeat 1 81 -98 2981 196 18 5 chr9 33067268 33067865 -109203579 + MER6A DNA MER2_type 1 605 0 327 268 34 34 chr9 33067865 33067962 -109203482 + (TA)n Simple_repeat Simple_repeat 80 179 0 982 258 39 29 chr9 33067977 33068287 -109203157 - MER83C LTR ERV1 -12 361 49 1294 246 43 17 chr9 33068340 33068685 -109202759 - MER83C-int LTR ERV1 0 4880 4527 443 309 40 24 chr9 33068809 33069061 -109202383 - MER83C-int LTR ERV1 -2812 4944 4689 858 135 6 58 chr9 33069084 33069240 -109202204 - THE1A LTR MaLR 0 355 208 10802 110 14 2 chr9 33069340 33070855 -109200589 - THE1A-int LTR MaLR -47 1533 1 2196 105 27 68 chr9 33070855 33071225 -109200219 - THE1A LTR MaLR 0 355 1 584 336 32 55 chr9 33071245 33071861 -109199583 - MER83C-int LTR ERV1 -2097 2857 2256 1439 306 58 22 chr9 33072028 33072767 -109198677 - MER83C-int LTR ERV1 -3073 1881 1116 4346 242 52 25 chr9 33072925 33074150 -109197294 - MER83C-int LTR ERV1 -3847 1033 4 929 256 31 47 chr9 33074153 33074473 -109196971 - MER83C LTR ERV1 -10 363 49 2214 116 0 0 chr9 33074533 33074827 -109196617 + AluY SINE Alu 1 294 -17 269 210 16 0 chr9 33075094 33075156 -109196288 - MER41B LTR ERV1 -91 544 482 2319 199 9 0 chr9 33075157 33075620 -109195824 + L1 LINE L1 4538 5004 -1142 274 311 19 10 chr9 33075837 33075940 -109195504 + L2 LINE L2 3210 3313 0 26 50 0 0 chr9 33076691 33076731 -109194713 + AT_rich Low_complexity Low_complexity 1 40 0 286 267 155 0 chr9 33077233 33077349 -109194095 - MER67D LTR ERV1 0 514 381 1393 197 21 21 chr9 33077388 33077678 -109193766 - AluJo SINE Alu -12 300 11 1657 176 27 67 chr9 33077689 33078092 -109193352 - MER67D LTR ERV1 -127 387 1 259 248 117 39 chr9 33078709 33078915 -109192529 + HAL1 LINE L1 2284 2505 -2 1661 277 94 25 chr9 33082242 33083019 -109188425 + L1MEc LINE L1 36 866 -5530 21 0 0 0 chr9 33083023 33083044 -109188400 + AT_rich Low_complexity Low_complexity 1 21 0 1188 282 37 11 chr9 33083064 33083522 -109187922 + L1M4 LINE L1 3325 3794 -2352 1173 197 33 158 chr9 33083525 33084043 -109187401 - MSTB2 LTR MaLR -4 453 1 4020 252 55 18 chr9 33084044 33085514 -109185930 + L1M4 LINE L1 3792 5321 -825 1803 161 13 7 chr9 33085514 33085824 -109185620 + AluJb SINE Alu 1 312 0 4020 252 55 18 chr9 33085824 33085853 -109185591 + L1M4 LINE L1 5321 5347 -799 211 284 57 57 chr9 33085921 33086009 -109185435 - L2 LINE L2 -35 3237 3150 333 82 0 0 chr9 33086548 33086597 -109184847 + (TCTA)n Simple_repeat Simple_repeat 4 52 0 21 0 0 0 chr9 33087437 33087458 -109183986 + AT_rich Low_complexity Low_complexity 1 21 0 42581 50 3 2 chr9 33087509 33093637 -109177807 - L1PA4 LINE L1 -8 6147 13 572 167 0 18 chr9 33093687 33093801 -109177643 + L1PA13 LINE L1 6020 6131 -32 756 186 0 0 chr9 33094090 33094214 -109177230 + FRAM SINE Alu 38 161 -15 24 0 0 0 chr9 33094559 33094583 -109176861 + AT_rich Low_complexity Low_complexity 1 24 0 1076 267 57 35 chr9 33094880 33095512 -109175932 - L1M4 LINE L1 -1492 4654 4009 * 2321 236 58 19 chr9 33095496 33096239 -109175205 - L1M4 LINE L1 -1970 4987 4216 232 233 0 0 chr9 33096251 33096294 -109175150 + polypyrimidine Low_complexity Low_complexity 2 44 0 345 300 17 17 chr9 33096317 33096437 -109175007 + Charlie8 DNA MER1_type 146 265 -2152 601 275 58 0 chr9 33099553 33099811 -109171633 - L1M4 LINE L1 -3171 3786 3514 254 207 69 0 chr9 33099867 33099925 -109171519 - L1M4 LINE L1 -5775 1084 1023 673 270 131 4 chr9 33099941 33100193 -109171251 - L1M4 LINE L1 -5886 973 690 2488 210 30 0 chr9 33100222 33100683 -109170761 - MER70B LTR ERVL -103 475 1 786 333 136 39 chr9 33100683 33101220 -109170224 - L1M4 LINE L1 -6161 698 110 198 0 0 0 chr9 33101220 33101242 -109170202 + (TC)n Simple_repeat Simple_repeat 1 22 0 239 0 32 0 chr9 33101242 33101273 -109170171 + (CA)n Simple_repeat Simple_repeat 1 32 0 204 97 0 0 chr9 33101360 33101391 -109170053 + (TTGG)n Simple_repeat Simple_repeat 2 32 0 241 246 108 0 chr9 33101398 33101463 -109169981 - L1MDa LINE L1 -6465 75 4 22 0 0 0 chr9 33102051 33102073 -109169371 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chr9 33102305 33102341 -109169103 + AT_rich Low_complexity Low_complexity 1 36 0 484 317 85 29 chr9 33102547 33102793 -109168651 - L1M4 LINE L1 -2192 3954 3695 2016 56 12 0 chr9 33103435 33103686 -109167758 - AluY SINE Alu -5 306 53 23 54 0 0 chr9 33104076 33104113 -109167331 + AT_rich Low_complexity Low_complexity 1 37 0 320 252 106 41 chr9 33105184 33105307 -109166137 + MIR SINE MIR 121 251 -11 843 290 152 27 chr9 33105357 33106291 -109165153 + L1M4 LINE L1 1390 2440 -3944 667 255 41 88 chr9 33106321 33106958 -109164486 + L1M4 LINE L1 5023 5630 -815 234 365 14 35 chr9 33109655 33109800 -109161644 - MIR3 SINE MIR -26 182 41 180 0 0 0 chr9 33111748 33111768 -109159676 + (A)n Simple_repeat Simple_repeat 1 20 0 200 268 41 0 chr9 33112361 33112458 -109158986 + (TA)n Simple_repeat Simple_repeat 2 102 0 761 314 40 36 chr9 33112508 33112860 -109158584 + L1M3d LINE L1 55 677 -5214 265 323 79 63 chr9 33112901 33113090 -109158354 + L1M3d LINE L1 202 393 -5498 498 122 12 0 chr9 33113173 33113255 -109158189 + L1MB1 LINE L1 5320 5402 -766 * 2266 67 7 0 chr9 33113250 33113550 -109157894 - L1PA5 LINE L1 -1068 5078 4777 7424 38 1 0 chr9 33113550 33114628 -109156816 + L1PA5 LINE L1 5075 6153 -1 3021 201 52 36 chr9 33114628 33115400 -109156044 + L1MB1 LINE L1 5385 6168 0 403 302 72 0 chr9 33115616 33115755 -109155689 + MIR SINE MIR 59 207 -55 273 217 228 6 chr9 33116210 33116390 -109155054 - MER97a DNA MER1_type? -2 892 673 1442 236 75 16 chr9 33116409 33116782 -109154662 - LTR52 LTR ERVL -20 401 7 * 1697 275 73 14 chr9 33116781 33117422 -109154022 - MER97b DNA MER1_type? -370 683 5 22 0 0 0 chr9 33117787 33117809 -109153635 + AT_rich Low_complexity Low_complexity 1 22 0 491 259 76 6 chr9 33118857 33119508 -109151936 - L1MB8 LINE L1 -56 6122 5401 195 283 152 28 chr9 33119899 33120044 -109151400 - L3 LINE CR1 -79 1498 1336 256 339 107 36 chr9 33120291 33120515 -109150929 - MIR SINE MIR -3 259 20 189 0 0 0 chr9 33122621 33122642 -109148802 + (TG)n Simple_repeat Simple_repeat 2 22 0 1016 218 0 15 chr9 33122659 33122861 -109148583 + Tigger3(Golem) DNA MER2_type 3 201 -2828 25 65 0 0 chr9 33122863 33122909 -109148535 + AT_rich Low_complexity Low_complexity 1 46 0 2846 138 69 11 chr9 33122999 33123251 -109148193 + Tigger3(Golem) DNA MER2_type 2453 2689 -340 2108 143 40 3 chr9 33123251 33123602 -109147842 + THE1B LTR MaLR 1 364 0 2846 138 69 11 chr9 33123602 33123872 -109147572 + Tigger3(Golem) DNA MER2_type 2689 3005 -24 189 0 0 0 chr9 33126375 33126396 -109145048 + (A)n Simple_repeat Simple_repeat 1 21 0 1694 129 39 70 chr9 33126680 33127067 -109144377 - THE1C LTR MaLR 0 375 1 302 179 0 15 chr9 33128541 33128608 -109142836 + (CATATA)n Simple_repeat Simple_repeat 4 69 0 215 232 18 0 chr9 33129004 33129060 -109142384 + GA-rich Low_complexity Low_complexity 3 59 0 22 0 0 0 chr9 33129660 33129682 -109141762 + AT_rich Low_complexity Low_complexity 1 22 0 887 243 61 22 chr9 33130248 33130609 -109140835 - LTR52 LTR ERVL -4 417 1 1370 271 69 73 chr9 33132399 33132430 -109139014 + L1MD1 LINE L1 46 76 -6464 1327 182 4 4 chr9 33132430 33132666 -109138778 + MER46A DNA MER2_type 1 236 0 1370 271 69 73 chr9 33132666 33133301 -109138143 + L1MD1 LINE L1 76 709 -5831 2347 182 29 17 chr9 33133330 33133809 -109137635 + L1MA7 LINE L1 5513 5997 -294 1787 256 22 56 chr9 33133806 33134534 -109136910 + L1MD1 LINE L1 4212 4914 -1626 * 624 232 47 50 chr9 33134547 33134763 -109136681 - MLT1D LTR MaLR -237 230 23 3756 187 26 50 chr9 33134772 33135659 -109135785 + L1MD1 LINE L1 5751 6616 -20 22 35 0 0 chr9 33135664 33135693 -109135751 + AT_rich Low_complexity Low_complexity 1 29 0 326 290 23 69 chr9 33136371 33136502 -109134942 + MIR SINE MIR 99 223 -39 214 330 31 62 chr9 33136688 33136882 -109134562 + L2 LINE L2 2725 2912 -402 217 293 154 41 chr9 33137106 33137229 -109134215 + L2 LINE L2 3136 3272 0 186 274 157 0 chr9 33137434 33137485 -109133959 + L3 LINE CR1 1159 1217 -360 939 168 33 39 chr9 33140463 33140900 -109130544 - MLT1D LTR MaLR -2 503 3 358 267 114 15 chr9 33141283 33141414 -109130030 + MIR SINE MIR 80 223 -39 203 309 174 29 chr9 33141962 33142169 -109129275 - MIR SINE MIR -11 251 15 35 24 0 0 chr9 33142669 33142711 -109128733 + AT_rich Low_complexity Low_complexity 1 42 0 727 242 17 48 chr9 33143534 33143765 -109127679 + MLT1B LTR MaLR 3 226 -164 653 234 59 17 chr9 33143774 33144045 -109127399 - MER52A LTR ERV1 -992 763 1 3082 254 76 12 chr9 33144146 33146313 -109125131 - L1MB7 LINE L1 -10 6672 4363 1522 172 38 78 chr9 33146327 33146722 -109124722 - MLT1B LTR MaLR -11 379 1 1259 285 18 20 chr9 33146727 33147228 -109124216 - L1MB7 LINE L1 -2291 4353 3854 6023 142 27 37 chr9 33147242 33147569 -109123875 - L1MA1 LINE L1 0 6302 5973 330 45 0 0 chr9 33147569 33147613 -109123831 + (TG)n Simple_repeat Simple_repeat 1 44 0 276 197 33 0 chr9 33147613 33147674 -109123770 - AluJ/FRAM SINE Alu -23 279 217 6023 142 27 37 chr9 33147674 33149430 -109122014 - L1MA1 LINE L1 -327 5975 4176 216 67 0 0 chr9 33149432 33149462 -109121982 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 1275 257 88 24 chr9 33149465 33149559 -109121885 - L1MB7 LINE L1 -2827 3817 3730 2216 108 7 0 chr9 33149559 33149865 -109121579 + AluSp SINE Alu 1 308 -5 1275 257 88 24 chr9 33149865 33150490 -109120954 - L1MB7 LINE L1 -2914 3730 3052 562 307 35 29 chr9 33150492 33150832 -109120612 - L1MB7 LINE L1 -5636 906 525 23 0 0 0 chr9 33150850 33150873 -109120571 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr9 33150991 33151021 -109120423 + AT_rich Low_complexity Low_complexity 1 30 0 24 32 0 0 chr9 33151271 33151302 -109120142 + AT_rich Low_complexity Low_complexity 1 31 0 392 188 0 0 chr9 33151404 33151468 -109119976 + AluS SINE Alu 1 64 -239 824 204 0 0 chr9 33151506 33151658 -109119786 + AluSg/x SINE Alu 145 296 -14 25 31 0 0 chr9 33151725 33151757 -109119687 + AT_rich Low_complexity Low_complexity 1 32 0 28 29 0 0 chr9 33151853 33151888 -109119556 + AT_rich Low_complexity Low_complexity 1 35 0 186 171 0 0 chr9 33152584 33152625 -109118819 + (CA)n Simple_repeat Simple_repeat 2 42 0 21 57 0 0 chr9 33152641 33152676 -109118768 + AT_rich Low_complexity Low_complexity 1 35 0 715 264 66 98 chr9 33152745 33153252 -109118192 + L1ME3A LINE L1 4927 5449 -721 1937 198 23 26 chr9 33153252 33153681 -109117763 + MSTB1 LTR MaLR 3 430 -2 715 264 66 98 chr9 33153681 33154039 -109117405 + L1ME3A LINE L1 5449 5758 -412 920 174 10 24 chr9 33154039 33154246 -109117198 + L1MA7 LINE L1 6082 6285 -6 715 264 66 98 chr9 33154246 33154399 -109117045 + L1ME3A LINE L1 5758 5914 -256 244 264 33 22 chr9 33154443 33154534 -109116910 + L1ME3A LINE L1 6053 6144 -26 3501 204 52 20 chr9 33156197 33157291 -109114153 + L1MB7 LINE L1 4890 6167 -17 1638 63 0 0 chr9 33157301 33157508 -109113936 - L1PA5 LINE L1 -1 6153 5947 35111 53 6 2 chr9 33157508 33163188 -109108256 - L1P2 LINE L1 -438 5716 11 259 236 106 56 chr9 33163219 33163307 -109108137 + L1MC5 LINE L1 5812 5894 -1914 3151 163 20 21 chr9 33163307 33163913 -109107531 + MER6A DNA MER2_type 1 605 0 259 236 106 56 chr9 33163913 33163985 -109107459 + L1MC5 LINE L1 5894 5980 -1828 2081 102 65 0 chr9 33164077 33164370 -109107074 + AluSq SINE Alu 2 313 0 25 51 0 0 chr9 33164409 33164448 -109106996 + AT_rich Low_complexity Low_complexity 1 39 0 601 220 140 35 chr9 33165409 33165681 -109105763 + L1MC5 LINE L1 6593 6893 -915 407 340 41 16 chr9 33165974 33166168 -109105276 + MIR3 SINE MIR 6 204 -4 3087 97 9 14 chr9 33166216 33166658 -109104786 - MLT2A1 LTR ERVL -3 441 2 21 57 0 0 chr9 33166976 33167011 -109104433 + AT_rich Low_complexity Low_complexity 1 35 0 23 33 0 0 chr9 33167108 33167138 -109104306 + AT_rich Low_complexity Low_complexity 1 30 0 39 50 0 0 chr9 33167244 33167304 -109104140 + AT_rich Low_complexity Low_complexity 1 60 0 681 194 16 0 chr9 33167860 33167989 -109103455 + FLAM_C SINE Alu 3 133 0 200 224 0 17 chr9 33168334 33168392 -109103052 + A-rich Low_complexity Low_complexity 4 60 0 273 333 31 38 chr9 33168449 33168608 -109102836 - MIR SINE MIR -32 230 73 4227 138 39 35 chr9 33170852 33171623 -109099821 + Tigger1 DNA MER2_type 528 1301 -1117 1124 176 27 0 chr9 33171660 33171881 -109099563 + Tigger1 DNA MER2_type 2190 2416 -2 1513 228 84 97 chr9 33171887 33172817 -109098627 - MER57A-int LTR ERV1 -2156 2780 1863 428 206 19 65 chr9 33172887 33172994 -109098450 - MER34 LTR ERV1 -305 237 136 733 213 134 4 chr9 33173138 33173415 -109098029 - MER57A-int LTR ERV1 -3481 1455 1143 271 175 0 63 chr9 33173560 33173623 -109097821 - MER57A-int LTR ERV1 -3996 940 882 808 251 154 27 chr9 33173960 33174219 -109097225 - MER57A-int LTR ERV1 -7243 294 3 701 221 135 109 chr9 33174222 33174615 -109096829 - MER57A LTR ERV1 0 403 1 251 256 209 0 chr9 33174962 33175048 -109096396 - L2 LINE L2 0 3272 3169 25 31 0 0 chr9 33175679 33175711 -109095733 + AT_rich Low_complexity Low_complexity 1 32 0 723 167 8 23 chr9 33176480 33176612 -109094832 - FLAM_C SINE Alu -13 130 1 201 94 0 0 chr9 33177464 33177496 -109093948 + (TC)n Simple_repeat Simple_repeat 1 32 0 412 345 107 11 chr9 33177692 33177953 -109093491 + L2 LINE L2 2565 2850 -464 270 294 40 16 chr9 33178210 33178336 -109093108 - L1M4 LINE L1 -5361 1181 1053 21 0 0 0 chr9 33178536 33178557 -109092887 + AT_rich Low_complexity Low_complexity 1 21 0 276 187 27 13 chr9 33178562 33178587 -109092857 - L1MDa LINE L1 -3923 2617 2594 2159 113 0 0 chr9 33178587 33178887 -109092557 - AluSx SINE Alu -12 300 1 276 187 27 13 chr9 33178887 33178936 -109092508 - L1MDa LINE L1 -3946 2594 2542 2050 133 19 27 chr9 33178952 33179320 -109092124 - L1MA2 LINE L1 0 6304 5940 305 179 103 0 chr9 33179321 33179399 -109092045 - L1MDa LINE L1 -3984 2556 2471 2678 151 16 0 chr9 33179412 33179863 -109091581 - L1PA13 LINE L1 -11 6152 5695 436 115 0 0 chr9 33181603 33181664 -109089780 - L1PA13 LINE L1 -252 5911 5851 2148 96 17 0 chr9 33181694 33181986 -109089458 + AluSp SINE Alu 1 297 -16 270 0 0 0 chr9 33181986 33182016 -109089428 + (TA)n Simple_repeat Simple_repeat 2 31 0 6885 142 17 21 chr9 33182745 33184606 -109086838 + L1MA2 LINE L1 4450 6304 0 314 202 109 62 chr9 33184615 33184808 -109086636 + L1ME LINE L1 681 882 -5188 1720 174 6 25 chr9 33185002 33185319 -109086125 + AluJo SINE Alu 2 312 0 256 279 36 103 chr9 33185868 33186033 -109085411 + MLT1G1-int LTR MaLR 1034 1187 -184 251 275 99 0 chr9 33186209 33186300 -109085144 + MLT1G1 LTR MaLR 2 101 -494 1358 67 0 6 chr9 33187491 33187670 -109083774 + AluY SINE Alu 132 309 -2 822 318 102 11 chr9 33188008 33188370 -109083074 + MLT1G1 LTR MaLR 151 545 -50 42 36 0 0 chr9 33189530 33189586 -109081858 + AT_rich Low_complexity Low_complexity 1 56 0 296 181 96 0 chr9 33190613 33190696 -109080748 + L1MC4 LINE L1 6615 6705 -1337 250 143 16 63 chr9 33192020 33192083 -109079361 + L1MC4 LINE L1 6648 6707 -1335 21 0 0 0 chr9 33192106 33192127 -109079317 + AT_rich Low_complexity Low_complexity 1 21 0 2088 116 0 10 chr9 33193488 33193780 -109077664 + AluSx SINE Alu 3 291 -21 36 77 0 0 chr9 33193931 33194009 -109077435 + AT_rich Low_complexity Low_complexity 1 78 0 258 239 14 14 chr9 33194075 33194146 -109077298 + MIR SINE MIR 188 258 -4 22 0 0 0 chr9 33194230 33194252 -109077192 + AT_rich Low_complexity Low_complexity 1 22 0 216 171 49 0 chr9 33194388 33194440 -109077004 + (TATG)n Simple_repeat Simple_repeat 1 54 0 1981 122 0 7 chr9 33194564 33194883 -109076561 + AluSq SINE Alu 1 317 0 502 302 55 19 chr9 33194947 33195258 -109076186 + L1M4 LINE L1 4018 4339 -1807 316 220 77 11 chr9 33195258 33195349 -109076095 - MER58B DNA MER1_type -5 336 240 21 0 0 0 chr9 33197015 33197036 -109074408 + AT_rich Low_complexity Low_complexity 1 21 0 588 207 6 22 chr9 33200187 33200366 -109071078 + CT-rich Low_complexity Low_complexity 3 178 0 372 22 0 0 chr9 33200913 33200958 -109070486 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 21 0 0 0 chr9 33201141 33201162 -109070282 + AT_rich Low_complexity Low_complexity 1 21 0 1337 219 39 28 chr9 33201298 33201659 -109069785 + MLT1A1 LTR MaLR 1 365 0 778 309 93 30 chr9 33201780 33202489 -109068955 + L2 LINE L2 2525 3280 -33 21 0 0 0 chr9 33203599 33203620 -109067824 + AT_rich Low_complexity Low_complexity 1 21 0 1763 249 5 13 chr9 33203671 33204069 -109067375 + MSTD LTR MaLR 2 396 0 2511 245 10 7 chr9 33204071 33204666 -109066778 + MSTD-int LTR MaLR 2 598 -1137 1824 42 5 0 chr9 33204667 33204880 -109066564 + AluY SINE Alu 69 282 -29 961 267 82 98 chr9 33204990 33205480 -109065964 + MSTD-int LTR MaLR 604 1085 -650 1710 212 89 31 chr9 33205501 33206019 -109065425 + LTR10A LTR ERV1 1 548 -61 2527 248 40 2 chr9 33206039 33206596 -109064848 + MSTD-int LTR MaLR 1107 1684 -51 1706 204 15 60 chr9 33206652 33207054 -109064390 + MSTD LTR MaLR 13 396 0 24 0 0 0 chr9 33207268 33207292 -109064152 + AT_rich Low_complexity Low_complexity 1 24 0 2620 150 62 39 chr9 33207826 33207926 -109063518 - LTR59 LTR ERV1 -18 579 483 208 0 62 0 chr9 33207926 33207958 -109063486 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2620 150 62 39 chr9 33207958 33208417 -109063027 - LTR59 LTR ERV1 -114 483 7 1486 101 0 0 chr9 33209224 33209423 -109062021 + AluSg/x SINE Alu 106 304 -8 762 219 87 21 chr9 33209458 33209808 -109061636 - L1MB4 LINE L1 -1 6179 5783 466 204 0 0 chr9 33209842 33209935 -109061509 + L1M2 LINE L1 2356 2448 -4401 38 0 0 0 chr9 33209935 33209973 -109061471 + AT_rich Low_complexity Low_complexity 1 38 0 3178 191 38 73 chr9 33209973 33210718 -109060726 + L1M2 LINE L1 2442 3204 -3644 555 152 0 20 chr9 33210718 33210809 -109060635 + FLAM_A SINE Alu 32 122 -189 180 0 0 0 chr9 33210809 33210829 -109060615 + (TTTAA)n Simple_repeat Simple_repeat 3 22 0 3178 191 38 73 chr9 33210836 33211547 -109059897 + L1M2 LINE L1 3204 3938 -2910 958 246 126 9 chr9 33211552 33211817 -109059627 - L1M4c LINE L1 -5326 1216 926 243 0 0 0 chr9 33211817 33211844 -109059600 + (TG)n Simple_repeat Simple_repeat 2 28 0 958 246 126 9 chr9 33211844 33211955 -109059489 - L1M4c LINE L1 -5616 926 829 820 314 82 39 chr9 33211962 33212630 -109058814 - L1M4c LINE L1 -5844 698 2 438 20 0 0 chr9 33212933 33212984 -109058460 + (TTA)n Simple_repeat Simple_repeat 1 51 0 320 277 12 24 chr9 33213814 33213897 -109057547 - MER20B DNA MER1_type -610 173 92 710 314 53 62 chr9 33214456 33214946 -109056498 - MLT1H LTR MaLR -2 547 1 216 200 0 0 chr9 33216058 33216128 -109055316 + T-rich Low_complexity Low_complexity 1 70 0 1366 218 38 51 chr9 33216151 33216546 -109054898 + MLT1B LTR MaLR 1 390 0 550 304 6 0 chr9 33216711 33216869 -109054575 + FRAM SINE Alu 3 161 -15 188 277 12 48 chr9 33218417 33218500 -109052944 - MIR SINE MIR -107 155 76 29 0 0 0 chr9 33218556 33218585 -109052859 + AT_rich Low_complexity Low_complexity 1 29 0 260 259 24 24 chr9 33218593 33218678 -109052766 + L2 LINE L2 2665 2749 -565 2110 99 7 0 chr9 33218678 33218962 -109052482 + AluSg SINE Alu 1 286 -24 207 0 0 0 chr9 33218966 33218989 -109052455 + (TAAAA)n Simple_repeat Simple_repeat 3 25 0 281 310 28 7 chr9 33219750 33219892 -109051552 + L1M3de LINE L1 1755 1899 -4754 3449 76 0 2 chr9 33219967 33220426 -109051018 + L1PA7 LINE L1 5695 6152 -2 237 269 41 7 chr9 33220920 33221065 -109050379 + L1MEc LINE L1 2093 2242 -4154 6040 74 5 16 chr9 33221632 33222459 -109048985 + L1PA6 LINE L1 5332 6149 -5 237 255 55 21 chr9 33222953 33223098 -109048346 + L1MEc LINE L1 2093 2242 -4154 432 326 85 7 chr9 33223553 33224129 -109047315 + L1MCc LINE L1 1263 1890 -4889 27 29 0 0 chr9 33224168 33224202 -109047242 + AT_rich Low_complexity Low_complexity 1 34 0 1002 342 53 23 chr9 33224873 33225443 -109046001 + L1PA16 LINE L1 788 1374 -6200 280 348 33 7 chr9 33225432 33225723 -109045721 + L1PA16 LINE L1 2075 2298 -5276 * 4979 252 36 24 chr9 33225942 33228728 -109042716 + L1PA16 LINE L1 2182 4962 -2622 * 42558 32 21 1 chr9 33228724 33234792 -109036652 + L1PA2 LINE L1 1 6191 0 451 191 95 48 chr9 33234797 33234944 -109036500 - MER112 DNA MER1_type -101 159 6 29 47 0 0 chr9 33235068 33235111 -109036333 + AT_rich Low_complexity Low_complexity 1 43 0 276 30 0 0 chr9 33235245 33235278 -109036166 + (A)n Simple_repeat Simple_repeat 1 33 0 7567 211 21 14 chr9 33235279 33237264 -109034180 + L1PA16 LINE L1 4949 6933 -671 2130 175 44 18 chr9 33237264 33237696 -109033748 + L1PA16 LINE L1 7143 7588 -16 2951 222 48 7 chr9 33237707 33238441 -109033003 - L1MB2 LINE L1 -31 6140 5377 342 0 0 0 chr9 33238549 33238587 -109032857 + (TG)n Simple_repeat Simple_repeat 1 38 0 198 305 221 39 chr9 33239376 33239530 -109031914 + MIR SINE MIR 47 228 -34 25 0 0 0 chr9 33239867 33239892 -109031552 + AT_rich Low_complexity Low_complexity 1 25 0 24 32 0 0 chr9 33240262 33240293 -109031151 + AT_rich Low_complexity Low_complexity 1 31 0 214 208 28 28 chr9 33240868 33240940 -109030504 + (TA)n Simple_repeat Simple_repeat 2 73 0 21 57 0 0 chr9 33241236 33241271 -109030173 + AT_rich Low_complexity Low_complexity 1 35 0 264 290 49 33 chr9 33241784 33241808 -109029636 + L1MEd LINE L1 1042 1064 -5055 249 33 0 0 chr9 33241808 33241838 -109029606 + (TA)n Simple_repeat Simple_repeat 1 30 0 264 290 49 33 chr9 33241838 33241996 -109029448 + L1MEd LINE L1 1064 1227 -4892 286 198 22 99 chr9 33242967 33243058 -109028386 + MLT1J LTR MaLR 388 471 -40 29 28 0 0 chr9 33243703 33243739 -109027705 + AT_rich Low_complexity Low_complexity 1 36 0 1858 151 27 3 chr9 33244560 33244858 -109026586 - AluJo SINE Alu -7 305 1 810 340 98 14 chr9 33244945 33245655 -109025789 - L2 LINE L2 -10 3303 2534 2073 109 6 32 chr9 33246080 33246393 -109025051 - AluSp SINE Alu -6 307 3 31 0 0 0 chr9 33246399 33246430 -109025014 + AT_rich Low_complexity Low_complexity 1 31 0 266 349 24 8 chr9 33246968 33247094 -109024350 + MER96 DNA MER1_type? 45 172 -3 317 87 0 0 chr9 33247293 33247339 -109024105 + MADE1 DNA Mariner 1 46 -34 339 22 22 0 chr9 33247379 33247424 -109024020 + MADE1 DNA Mariner 35 80 0 366 325 49 6 chr9 33247432 33247595 -109023849 + MIR SINE MIR 92 261 -1 22 0 0 0 chr9 33247806 33247828 -109023616 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr9 33247963 33247995 -109023449 + AT_rich Low_complexity Low_complexity 1 32 0 932 268 127 63 chr9 33249831 33250655 -109020789 + HAL1b LINE L1 440 1316 -32 822 146 15 0 chr9 33250746 33250876 -109020568 + AluJo/FLAM SINE Alu 1 132 -180 366 254 16 71 chr9 33250878 33251004 -109020440 + AluSc SINE Alu 181 299 0 21 36 0 0 chr9 33251247 33251275 -109020169 + AT_rich Low_complexity Low_complexity 1 28 0 231 88 0 0 chr9 33251778 33251812 -109019632 + (GGAA)n Simple_repeat Simple_repeat 3 36 0 291 233 108 97 chr9 33252254 33252430 -109019014 + MER104 DNA Tc2 1 178 -2 195 42 0 0 chr9 33253510 33253534 -109017910 + (TTG)n Simple_repeat Simple_repeat 1 24 0 180 0 0 0 chr9 33254005 33254025 -109017419 + (TA)n Simple_repeat Simple_repeat 1 20 0 26 64 0 0 chr9 33254103 33254150 -109017294 + AT_rich Low_complexity Low_complexity 1 47 0 679 214 0 0 chr9 33254736 33254867 -109016577 - MER52A LTR ERV1 -208 1547 1417 3768 165 25 3 chr9 33255134 33255776 -109015668 - MER52A LTR ERV1 0 1755 1100 1749 234 51 2 chr9 33255897 33256351 -109015093 - L1MB1 LINE L1 -362 5827 5352 342 0 0 0 chr9 33256439 33256477 -109014967 + (TG)n Simple_repeat Simple_repeat 1 38 0 198 305 221 39 chr9 33257266 33257420 -109014024 + MIR SINE MIR 47 228 -34 25 0 0 0 chr9 33257757 33257782 -109013662 + AT_rich Low_complexity Low_complexity 1 25 0 24 32 0 0 chr9 33258152 33258183 -109013261 + AT_rich Low_complexity Low_complexity 1 31 0 214 208 28 28 chr9 33258758 33258830 -109012614 + (TA)n Simple_repeat Simple_repeat 2 73 0 21 57 0 0 chr9 33259126 33259161 -109012283 + AT_rich Low_complexity Low_complexity 1 35 0 264 290 49 33 chr9 33259674 33259698 -109011746 + L1MEd LINE L1 1042 1064 -5055 249 33 0 0 chr9 33259698 33259728 -109011716 + (TA)n Simple_repeat Simple_repeat 1 30 0 264 290 49 33 chr9 33259728 33259886 -109011558 + L1MEd LINE L1 1064 1227 -4892 261 186 23 105 chr9 33260858 33260944 -109010500 + MLT1J LTR MaLR 388 466 -45 29 28 0 0 chr9 33261590 33261626 -109009818 + AT_rich Low_complexity Low_complexity 1 36 0 1884 151 27 3 chr9 33262447 33262745 -109008699 - AluJo SINE Alu -7 305 1 801 343 97 13 chr9 33262832 33263542 -109007902 - L2 LINE L2 -10 3303 2534 2086 112 6 32 chr9 33263967 33264280 -109007164 - AluSp SINE Alu -6 307 3 31 0 0 0 chr9 33264286 33264317 -109007127 + AT_rich Low_complexity Low_complexity 1 31 0 267 349 24 8 chr9 33264855 33264981 -109006463 + MER96 DNA MER1_type? 45 172 -3 315 87 0 0 chr9 33265180 33265226 -109006218 + MADE1 DNA Mariner 1 46 -34 338 22 22 0 chr9 33265266 33265311 -109006133 + MADE1 DNA Mariner 35 80 0 357 325 49 6 chr9 33265319 33265482 -109005962 + MIR SINE MIR 92 261 -1 22 0 0 0 chr9 33265693 33265715 -109005729 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr9 33265850 33265882 -109005562 + AT_rich Low_complexity Low_complexity 1 32 0 847 271 119 55 chr9 33267718 33268542 -109002902 + HAL1b LINE L1 440 1316 -32 833 146 15 0 chr9 33268633 33268763 -109002681 + AluJo/FLAM SINE Alu 1 132 -180 366 254 16 71 chr9 33268765 33268891 -109002553 + AluSc SINE Alu 181 299 0 21 36 0 0 chr9 33269134 33269162 -109002282 + AT_rich Low_complexity Low_complexity 1 28 0 231 88 0 0 chr9 33269665 33269699 -109001745 + (GGAA)n Simple_repeat Simple_repeat 3 36 0 281 233 108 97 chr9 33270141 33270317 -109001127 + MER104 DNA Tc2 1 178 -2 195 42 0 0 chr9 33271397 33271421 -109000023 + (TTG)n Simple_repeat Simple_repeat 1 24 0 700 214 0 0 chr9 33271777 33271908 -108999536 - MER52A LTR ERV1 -208 1547 1417 7599 189 133 6 chr9 33272175 33273733 -108997711 - MER52A LTR ERV1 0 1755 1 563 244 8 0 chr9 33276045 33276172 -108995272 + Tigger3(Golem) DNA MER2_type 1 128 -2901 4590 155 25 27 chr9 33276174 33276931 -108994513 + Tigger3(Golem) DNA MER2_type 2117 2873 -156 1988 158 3 51 chr9 33276931 33277285 -108994159 - MER1B DNA MER1_type 0 337 1 4590 155 25 27 chr9 33277285 33277422 -108994022 + Tigger3(Golem) DNA MER2_type 2873 3009 -20 2787 209 27 11 chr9 33277429 33277983 -108993461 - MER52A LTR ERV1 -2 1753 1191 3574 51 2 2 chr9 33277983 33278431 -108993013 + LTR7 LTR ERV1 1 448 -2 5796 102 19 43 chr9 33278433 33279418 -108992026 + HERVH LTR ERV1 1 962 -6751 5768 119 0 12 chr9 33279518 33280412 -108991032 + HERVH LTR ERV1 2113 2995 -4718 964 133 7 0 chr9 33280391 33280541 -108990903 + HERVH LTR ERV1 3140 3290 -4423 * 27332 89 8 16 chr9 33280531 33284854 -108986590 + HERVH LTR ERV1 3492 7713 0 3503 60 2 2 chr9 33284854 33285302 -108986142 + LTR7 LTR ERV1 1 448 -2 3923 233 54 30 chr9 33285304 33286396 -108985048 - MER52A LTR ERV1 -560 1195 1 397 246 64 0 chr9 33286425 33286535 -108984909 + MIR SINE MIR 112 228 -34 1649 207 19 16 chr9 33288367 33288690 -108982754 - MLT1A1 LTR MaLR -41 324 1 215 211 0 0 chr9 33288690 33288728 -108982716 + (ATG)n Simple_repeat Simple_repeat 2 39 0 256 264 14 0 chr9 33288743 33288815 -108982629 + L1MA9 LINE L1 6087 6159 -153 554 278 67 16 chr9 33288855 33289049 -108982395 - MIR SINE MIR -57 205 2 198 71 0 0 chr9 33289301 33289329 -108982115 + (CA)n Simple_repeat Simple_repeat 1 28 0 305 240 146 0 chr9 33289391 33289487 -108981957 - L1ME4a LINE L1 -260 5861 5752 334 358 19 0 chr9 33289501 33289663 -108981781 - L1ME4a LINE L1 -412 5709 5545 351 268 24 41 chr9 33289727 33289850 -108981594 - L1ME4a LINE L1 -673 5448 5328 264 322 15 20 chr9 33290307 33290506 -108980938 - L1MC/D LINE L1 -1909 6293 6096 1789 181 29 18 chr9 33291152 33291495 -108979949 + MER7A DNA MER2_type 1 345 -1 22 35 0 0 chr9 33291612 33291641 -108979803 + AT_rich Low_complexity Low_complexity 1 29 0 28 61 0 0 chr9 33291888 33291937 -108979507 + AT_rich Low_complexity Low_complexity 1 49 0 52 0 0 0 chr9 33292499 33292551 -108978893 + AT_rich Low_complexity Low_complexity 1 52 0 7427 138 31 7 chr9 33293157 33294426 -108977018 - HSMAR2 DNA Mariner -1 1301 2 892 282 79 10 chr9 33294684 33295180 -108976264 - L1MC/D LINE L1 -1523 5017 4488 468 91 0 0 chr9 33295263 33295329 -108976115 - AluSp/q SINE Alu -12 301 236 1149 146 0 11 chr9 33295329 33295514 -108975930 - AluSx SINE Alu -127 185 3 612 334 73 14 chr9 33295524 33296249 -108975195 - L1MC/D LINE L1 -2300 4240 3473 446 226 83 11 chr9 33296259 33296440 -108975004 - L1MC/D LINE L1 -4032 2689 2496 312 303 66 30 chr9 33296693 33296964 -108974480 - L1MC/D LINE L1 -4577 2144 1864 504 265 80 103 chr9 33297012 33297438 -108974006 - L1MEc LINE L1 -4832 1727 1293 1390 142 13 13 chr9 33299674 33299913 -108971531 + L1PA16 LINE L1 5923 6161 -5 2009 135 17 0 chr9 33300765 33301054 -108970390 + AluSx SINE Alu 1 294 -18 653 218 14 51 chr9 33301059 33301275 -108970169 + L1MA10 LINE L1 6116 6323 -11 287 272 10 29 chr9 33302827 33302930 -108968514 + (CTA)n Simple_repeat Simple_repeat 1 101 0 213 39 0 0 chr9 33303317 33303343 -108968101 + (TTCC)n Simple_repeat Simple_repeat 1 26 0 1839 166 10 3 chr9 33303343 33303644 -108967800 - AluSq SINE Alu -10 303 1 2916 6 0 0 chr9 33304038 33304352 -108967092 - AluYb8 SINE Alu -4 314 1 31 0 0 0 chr9 33304363 33304394 -108967050 + AT_rich Low_complexity Low_complexity 1 31 0 2433 93 0 0 chr9 33304545 33304879 -108966565 + L1PA7 LINE L1 5821 6154 0 28 48 0 0 chr9 33305044 33305086 -108966358 + AT_rich Low_complexity Low_complexity 1 42 0 296 313 56 14 chr9 33305241 33305385 -108966059 + MIR SINE MIR 76 225 -37 253 273 131 40 chr9 33306967 33307066 -108964378 - MIR SINE MIR -71 137 30 21 36 0 0 chr9 33308008 33308036 -108963408 + AT_rich Low_complexity Low_complexity 1 28 0 2190 111 51 20 chr9 33308740 33309093 -108962351 - THE1B LTR MaLR 0 364 1 21 0 0 0 chr9 33310826 33310847 -108960597 + AT_rich Low_complexity Low_complexity 1 21 0 243 88 0 0 chr9 33310930 33310964 -108960480 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 21 0 0 0 chr9 33311970 33311991 -108959453 + AT_rich Low_complexity Low_complexity 1 21 0 1523 144 22 11 chr9 33312598 33312869 -108958575 - AluSg SINE Alu -19 291 18 337 307 48 0 chr9 33312996 33313188 -108958256 + L1MC/D LINE L1 5616 5820 -301 191 86 0 29 chr9 33313586 33313621 -108957823 + (CAAAA)n Simple_repeat Simple_repeat 3 36 0 2348 56 0 0 chr9 33314010 33314336 -108957108 + AluY SINE Alu 1 326 0 201 320 110 10 chr9 33315080 33315142 -108956302 - MIR3 SINE MIR -2 206 152 1006 80 0 0 chr9 33315142 33315279 -108956165 - L1PA7 LINE L1 -3 6151 6015 201 320 110 10 chr9 33315279 33315316 -108956128 - MIR3 SINE MIR -56 152 97 225 192 41 27 chr9 33316099 33316172 -108955272 + CT-rich Low_complexity Low_complexity 1 74 0 783 239 20 0 chr9 33317325 33317526 -108953918 + L1MC/D LINE L1 4945 5149 -997 510 228 110 0 chr9 33318075 33318211 -108953233 + MLT1I LTR MaLR 245 395 -14 303 335 58 40 chr9 33318746 33319024 -108952420 + L1MC/D LINE L1 5314 5596 -2212 1121 66 0 0 chr9 33319173 33319325 -108952119 + L1PA4 LINE L1 6004 6155 0 1568 184 7 19 chr9 33319449 33319759 -108951685 + AluJo SINE Alu 1 306 -6 559 333 95 41 chr9 33319773 33320342 -108951102 - L2 LINE L2 -168 3145 2551 4792 191 27 5 chr9 33320853 33322079 -108949365 - L1MA7 LINE L1 0 6291 5036 7301 35 1 15 chr9 33324111 33325271 -108946173 - L1PA5 LINE L1 0 6154 5022 2340 48 41 0 chr9 33325271 33325564 -108945880 - AluY SINE Alu -5 306 2 7301 35 1 15 chr9 33325564 33326092 -108945352 - L1PA5 LINE L1 -1132 5022 4488 11245 41 9 0 chr9 33326092 33327501 -108943943 + L1PA5 LINE L1 3081 4502 -1644 2159 112 3 0 chr9 33327613 33327939 -108943505 + AluSp SINE Alu 1 327 0 2119 119 0 3 chr9 33329311 33329621 -108941823 - AluSg SINE Alu -1 309 1 511 316 119 50 chr9 33330246 33330741 -108940703 + L2 LINE L2 2661 3204 -109 1804 235 18 35 chr9 33330741 33331255 -108940189 + MLT1D LTR MaLR 1 505 0 511 316 119 50 chr9 33331255 33331363 -108940081 + L2 LINE L2 3204 3303 -10 23 54 0 0 chr9 33331429 33331466 -108939978 + AT_rich Low_complexity Low_complexity 1 37 0 719 240 31 15 chr9 33331606 33331802 -108939642 - L1MC5 LINE L1 -61 7900 7702 306 248 20 89 chr9 33331970 33332071 -108939373 + MLT1H LTR MaLR 241 334 -215 262 210 55 47 chr9 33332105 33332211 -108939233 + MLT1H LTR MaLR 437 582 -8 387 279 0 0 chr9 33332289 33332411 -108939033 - MER69 DNA AcHobo -7 2519 2398 3213 74 0 2 chr9 33333309 33333742 -108937702 - L1PA7 LINE L1 -2 6152 5721 310 312 11 0 chr9 33334628 33334721 -108936723 - L1MC4 LINE L1 -1337 6705 6612 267 210 48 0 chr9 33334725 33334787 -108936657 + (CATATA)n Simple_repeat Simple_repeat 3 67 0 264 232 98 0 chr9 33334787 33334869 -108936575 + L1MC4 LINE L1 6614 6703 -1339 331 276 85 56 chr9 33336635 33336954 -108934490 - L1M4 LINE L1 -1938 4208 3881 496 333 46 31 chr9 33337100 33337490 -108933954 - L1M4 LINE L1 -2422 3724 3329 504 250 0 0 chr9 33337555 33337667 -108933777 - FAM SINE Alu -37 148 37 361 265 26 0 chr9 33337942 33338059 -108933385 - L1M4 LINE L1 -3329 2817 2698 27 62 0 0 chr9 33339064 33339112 -108932332 + AT_rich Low_complexity Low_complexity 1 48 0 333 261 87 0 chr9 33340483 33340598 -108930846 - L2 LINE L2 -12 3301 3177 189 273 193 27 chr9 33340614 33340764 -108930680 + L2 LINE L2 3011 3185 -128 514 286 156 38 chr9 33342235 33342710 -108928734 - L2 LINE L2 -5 3308 2780 2263 70 23 0 chr9 33342772 33343071 -108928373 - AluY SINE Alu -5 306 1 449 336 94 62 chr9 33343739 33344430 -108927014 - L3 LINE CR1 -575 1002 290 350 367 38 22 chr9 33345306 33345619 -108925825 - L1ME4a LINE L1 -159 5962 5645 702 162 8 0 chr9 33345969 33346086 -108925358 + AluJb SINE Alu 165 282 -30 2395 60 7 0 chr9 33346221 33346522 -108924922 - AluY SINE Alu -8 303 1 25 0 0 0 chr9 33346742 33346767 -108924677 + AT_rich Low_complexity Low_complexity 1 25 0 249 188 16 31 chr9 33347363 33347427 -108924017 + GA-rich Low_complexity Low_complexity 3 65 0 305 289 133 23 chr9 33347854 33347982 -108923462 + L2 LINE L2 3171 3312 -1 5351 154 47 3 chr9 33348588 33350129 -108921315 - L1MA4 LINE L1 -6 6294 4673 239 0 32 0 chr9 33350129 33350160 -108921284 + (TTG)n Simple_repeat Simple_repeat 2 33 0 5351 154 47 3 chr9 33350160 33350299 -108921145 - L1MA4 LINE L1 -1627 4673 4542 187 336 172 8 chr9 33350777 33350899 -108920545 + MIR SINE MIR 32 173 -89 2397 73 3 0 chr9 33350910 33351213 -108920231 - AluY SINE Alu -6 305 2 240 111 0 0 chr9 33351228 33351264 -108920180 + (A)n Simple_repeat Simple_repeat 1 36 0 1893 82 30 26 chr9 33351568 33351835 -108919609 + AluSg SINE Alu 35 302 -8 2358 192 25 40 chr9 33352084 33352611 -108918833 - MLT2B1 LTR ERVL 0 520 2 4087 125 0 28 chr9 33353243 33353897 -108917547 + L1PA15 LINE L1 5526 6161 -4 346 259 43 79 chr9 33354272 33354411 -108917033 + L1ME LINE L1 37 170 -5900 1054 263 91 53 chr9 33354413 33354978 -108916466 - MLT1E1 LTR MaLR -7 647 1 267 345 12 48 chr9 33355075 33355243 -108916201 + L1ME LINE L1 254 415 -5655 * 1369 256 17 37 chr9 33355239 33355624 -108915820 - L1M4 LINE L1 -2266 3880 3502 2238 98 7 0 chr9 33355624 33355920 -108915524 + AluSg SINE Alu 1 298 -12 1369 256 17 37 chr9 33355920 33355940 -108915504 - L1M4 LINE L1 -2644 3502 3483 533 332 96 21 chr9 33356094 33356471 -108914973 - L1MEc LINE L1 -5963 433 29 2249 328 57 21 chr9 33356836 33357851 -108913593 + L2 LINE L2 38 1089 -2225 1995 196 39 5 chr9 33357868 33358478 -108912966 - Tigger7 DNA MER2_type -1777 710 2 525 319 98 0 chr9 33358479 33358642 -108912802 + L2 LINE L2 1061 1239 -2075 2073 307 94 23 chr9 33358863 33359940 -108911504 + L2 LINE L2 1897 3043 -270 5258 109 32 2 chr9 33360227 33361037 -108910407 - L1PA7 LINE L1 -1464 4682 3849 6593 73 10 1 chr9 33361038 33362491 -108908953 + L1PA7 LINE L1 4685 6154 0 2389 80 6 3 chr9 33362167 33362493 -108908951 + L1PA7 LINE L1 5828 6154 0 23 0 0 0 chr9 33362572 33362595 -108908849 + AT_rich Low_complexity Low_complexity 1 23 0 281 375 52 2 chr9 33362867 33363022 -108908422 - MER5A DNA MER1_type 0 178 15 21 36 0 0 chr9 33363661 33363689 -108907755 + AT_rich Low_complexity Low_complexity 1 28 0 2231 106 10 0 chr9 33364529 33364832 -108906612 + AluSc SINE Alu 1 306 -3 186 43 0 0 chr9 33365854 33365877 -108905567 + (T)n Simple_repeat Simple_repeat 1 23 0 351 44 0 0 chr9 33366216 33366261 -108905183 + (TG)n Simple_repeat Simple_repeat 2 46 0 2247 97 0 7 chr9 33366515 33366813 -108904631 + AluSx SINE Alu 1 296 -16 265 365 83 0 chr9 33367966 33368111 -108903333 + L1ME LINE L1 12 168 -5902 405 173 39 167 chr9 33369590 33369746 -108901698 + LTR28 LTR ERV1 1 171 -289 2131 191 98 50 chr9 33369762 33370417 -108901027 + LTR28 LTR ERV1 121 819 -7 2085 125 0 0 chr9 33371065 33371352 -108900092 + AluSx SINE Alu 2 288 -24 799 302 56 32 chr9 33371811 33372373 -108899071 + MLT2E LTR ERVL 6 628 0 243 266 75 53 chr9 33372660 33372754 -108898690 - MER5A DNA MER1_type 0 189 94 2228 168 36 7 chr9 33373309 33373725 -108897719 - MSTA LTR MaLR 0 428 1 31 0 0 0 chr9 33373737 33373768 -108897676 + AT_rich Low_complexity Low_complexity 1 31 0 25 65 0 0 chr9 33373860 33373906 -108897538 + AT_rich Low_complexity Low_complexity 1 46 0 316 346 66 15 chr9 33373994 33374130 -108897314 - MIR3 SINE MIR -64 144 2 700 207 122 0 chr9 33374599 33374787 -108896657 + MER33 DNA MER1_type 25 235 -89 1171 180 32 54 chr9 33374795 33375073 -108896371 - AluJb SINE Alu -19 293 22 25 0 0 0 chr9 33375384 33375409 -108896035 + AT_rich Low_complexity Low_complexity 1 25 0 316 239 7 7 chr9 33375475 33375613 -108895831 + (TA)n Simple_repeat Simple_repeat 2 139 0 260 224 45 0 chr9 33375824 33375891 -108895553 + Charlie1 DNA MER1_type 2687 2756 -5 22 35 0 0 chr9 33376844 33376873 -108894571 + AT_rich Low_complexity Low_complexity 1 29 0 206 258 52 62 chr9 33377351 33377448 -108893996 - L2 LINE L2 -6 3307 3212 549 111 58 14 chr9 33378080 33378374 -108893070 + (TA)n Simple_repeat Simple_repeat 1 307 0 209 156 0 62 chr9 33378375 33378439 -108893005 + (TTTA)n Simple_repeat Simple_repeat 2 61 0 348 0 0 55 chr9 33378448 33378503 -108892941 + (TTAAA)n Simple_repeat Simple_repeat 1 52 0 871 200 10 34 chr9 33378507 33378712 -108892732 - L1MC3 LINE L1 -568 7217 7018 189 357 65 26 chr9 33379012 33379166 -108892278 + L3 LINE CR1 1374 1533 -44 871 200 10 34 chr9 33380530 33380735 -108890709 + L1MC3 LINE L1 7018 7217 -568 222 37 0 0 chr9 33380739 33380766 -108890678 + (TTTAA)n Simple_repeat Simple_repeat 1 27 0 39 0 0 0 chr9 33380766 33380805 -108890639 + AT_rich Low_complexity Low_complexity 1 39 0 395 106 81 0 chr9 33380806 33380966 -108890478 + (TA)n Simple_repeat Simple_repeat 1 173 0 328 131 65 7 chr9 33380981 33381134 -108890310 + (TA)n Simple_repeat Simple_repeat 1 162 0 586 119 48 6 chr9 33381271 33381608 -108889836 + (TA)n Simple_repeat Simple_repeat 1 351 0 1891 127 14 7 chr9 33381608 33381891 -108889553 - AluSg SINE Alu -25 285 1 314 246 0 10 chr9 33381923 33382021 -108889423 + L1MC4 LINE L1 7901 8015 -27 25 31 0 0 chr9 33382024 33382056 -108889388 + AT_rich Low_complexity Low_complexity 1 32 0 2033 125 3 13 chr9 33382651 33382955 -108888489 + AluSg SINE Alu 1 301 -9 183 42 0 0 chr9 33383241 33383265 -108888179 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 203 195 24 0 chr9 33383757 33383798 -108887646 + (TATG)n Simple_repeat Simple_repeat 2 43 0 189 300 17 17 chr9 33383967 33384027 -108887417 + MIR SINE MIR 16 75 -133 1283 315 32 99 chr9 33384051 33384978 -108886466 + L2 LINE L2 418 1282 -2032 367 258 24 32 chr9 33385072 33385196 -108886248 + L2 LINE L2 2278 2400 -914 857 301 70 55 chr9 33385239 33385694 -108885750 + L2 LINE L2 2852 3313 0 237 326 0 0 chr9 33385704 33385799 -108885645 + L1MCb LINE L1 790 884 -5161 582 220 0 0 chr9 33385799 33385917 -108885527 + L1PB4 LINE L1 6028 6145 -11 2532 140 24 7 chr9 33386040 33386461 -108884983 + MSTA LTR MaLR 1 428 0 341 294 82 27 chr9 33388192 33388338 -108883106 + MIR SINE MIR 91 244 -18 438 139 100 52 chr9 33388512 33388641 -108882803 + L1MA8 LINE L1 6070 6197 -94 405 127 14 0 chr9 33388641 33388710 -108882734 + L1MA9 LINE L1 6241 6312 0 438 139 100 52 chr9 33388710 33388730 -108882714 + L1MA8 LINE L1 6197 6215 -76 564 288 124 8 chr9 33389149 33389399 -108882045 - LTR16A1 LTR ERVL 0 457 179 479 292 116 13 chr9 33390065 33390462 -108880982 + MLT1L LTR MaLR 131 609 -6 740 288 0 41 chr9 33390493 33390712 -108880732 + MER63A DNA MER1_type 1 210 0 376 299 28 14 chr9 33390715 33390859 -108880585 - LTR67 LTR ERVL -10 547 402 2589 85 98 5 chr9 33390934 33391344 -108880100 + LTR7 LTR ERV1 1 448 -2 36 77 0 0 chr9 33391814 33391892 -108879552 + AT_rich Low_complexity Low_complexity 1 78 0 302 321 36 29 chr9 33392130 33392270 -108879174 + L1MB7 LINE L1 4067 4207 -1939 338 194 10 51 chr9 33392436 33392534 -108878910 + L1MB7 LINE L1 4178 4271 -1875 * 3101 213 31 39 chr9 33392528 33393304 -108878140 + L1MA9 LINE L1 5505 6274 -38 23 0 0 0 chr9 33393304 33393327 -108878117 + AT_rich Low_complexity Low_complexity 1 23 0 1876 250 58 31 chr9 33393361 33394104 -108877340 + L1MB7 LINE L1 4272 5034 -1112 245 95 0 81 chr9 33394172 33394246 -108877198 + (TA)n Simple_repeat Simple_repeat 1 68 0 230 288 31 19 chr9 33394192 33394301 -108877143 + (TATAG)n Simple_repeat Simple_repeat 4 117 -48 * 4061 35 17 0 chr9 33394301 33394783 -108876661 + LTR2B LTR ERV1 1 490 0 230 288 31 19 chr9 33394783 33394833 -108876611 + (TATAG)n Simple_repeat Simple_repeat 117 165 0 299 174 10 0 chr9 33394834 33394904 -108876540 - L1ME LINE L1 -485 5679 5605 2120 251 58 51 chr9 33394935 33395122 -108876322 + L1MB7 LINE L1 5088 5272 -912 408 20 0 0 chr9 33395122 33395171 -108876273 + (TTA)n Simple_repeat Simple_repeat 1 49 0 2120 251 58 51 chr9 33395171 33395201 -108876243 + L1MB7 LINE L1 5272 5300 -884 2561 62 0 12 chr9 33395201 33395537 -108875907 - L1PA7 LINE L1 0 6154 5823 2120 251 58 51 chr9 33395537 33395601 -108875843 + L1MB7 LINE L1 5300 5362 -822 1484 219 7 3 chr9 33395601 33395902 -108875542 + AluJo SINE Alu 5 306 -6 2120 251 58 51 chr9 33395902 33396677 -108874767 + L1MB7 LINE L1 5362 6174 -10 271 407 16 41 chr9 33397320 33397563 -108873881 + L2 LINE L2 2986 3222 -50 23 0 0 0 chr9 33398652 33398675 -108872769 + AT_rich Low_complexity Low_complexity 1 23 0 379 329 33 33 chr9 33398686 33398896 -108872548 + L1M4 LINE L1 3608 3817 -2329 32 0 0 0 chr9 33399226 33399258 -108872186 + AT_rich Low_complexity Low_complexity 1 32 0 1603 126 0 69 chr9 33399888 33400165 -108871279 - AluJo SINE Alu -16 296 39 226 175 0 32 chr9 33400313 33400376 -108871068 + CT-rich Low_complexity Low_complexity 1 61 0 266 169 15 0 chr9 33400394 33400459 -108870985 + (CA)n Simple_repeat Simple_repeat 2 67 0 241 271 35 12 chr9 33401273 33401358 -108870086 - L1MC4 LINE L1 -1342 6700 6614 229 330 51 17 chr9 33401363 33401481 -108869963 + L2 LINE L2 3175 3296 -17 25 51 0 0 chr9 33401486 33401525 -108869919 + AT_rich Low_complexity Low_complexity 1 39 0 24 32 0 0 chr9 33401932 33401963 -108869481 + AT_rich Low_complexity Low_complexity 1 31 0 23 33 0 0 chr9 33402180 33402210 -108869234 + AT_rich Low_complexity Low_complexity 1 30 0 3872 169 34 14 chr9 33402282 33403047 -108868397 + L1MA10 LINE L1 5553 6332 -2 25 0 0 0 chr9 33403297 33403322 -108868122 + AT_rich Low_complexity Low_complexity 1 25 0 406 321 92 5 chr9 33403841 33404025 -108867419 + MIR SINE MIR 10 209 -53 485 254 94 50 chr9 33404233 33404434 -108867010 + L1ME1 LINE L1 5909 6082 -84 218 304 185 0 chr9 33404883 33405018 -108866426 + MIR3 SINE MIR 9 168 -40 1821 160 20 23 chr9 33405351 33405695 -108865749 + MER2 DNA MER2_type 2 344 0 1841 164 61 19 chr9 33406621 33406981 -108864463 - THE1C LTR MaLR 0 375 1 204 83 0 56 chr9 33406996 33407032 -108864412 + (TTTTTA)n Simple_repeat Simple_repeat 2 35 0 756 146 49 0 chr9 33407502 33407646 -108863798 - L1MB1 LINE L1 -1 6167 6017 1692 121 51 81 chr9 33407668 33408039 -108863405 + THE1C LTR MaLR 1 360 -15 1965 136 163 8 chr9 33408527 33408896 -108862548 + MSTA LTR MaLR 3 428 0 1905 142 3 0 chr9 33409674 33409963 -108861481 - AluSx SINE Alu -22 290 1 587 261 38 16 chr9 33410182 33410392 -108861052 + L1MCa LINE L1 1 192 -5853 1026 269 93 25 chr9 33410429 33410826 -108860618 + MLT1C LTR MaLR 35 458 -9 454 254 16 8 chr9 33410827 33410949 -108860495 + L1MCa LINE L1 218 340 -5705 709 264 26 10 chr9 33411161 33411354 -108860090 + L1MCa LINE L1 359 554 -5491 2110 104 17 7 chr9 33411360 33411659 -108859785 + AluSc SINE Alu 1 302 -7 1036 256 62 39 chr9 33411770 33412203 -108859241 + L1MCa LINE L1 570 1012 -5033 541 318 29 0 chr9 33412256 33412501 -108858943 - L1MCa LINE L1 -3653 2991 2740 1083 279 16 5 chr9 33412512 33412885 -108858559 + L1MCa LINE L1 2999 3375 -3269 2370 254 93 65 chr9 33412915 33413779 -108857665 + L1MCb LINE L1 4 843 -5705 447 69 0 0 chr9 33413779 33413837 -108857607 + MER41A LTR ERV1 494 551 -3 2370 254 93 65 chr9 33413837 33414552 -108856892 + L1MCb LINE L1 843 1697 -4851 424 289 86 22 chr9 33414603 33414835 -108856609 - L1M4 LINE L1 -6292 250 4 3717 110 32 0 chr9 33414837 33415374 -108856070 - MER41A LTR ERV1 0 554 1 13491 155 78 47 chr9 33415374 33418554 -108852890 - MER41A-int LTR ERV1 -2 5944 2667 291 80 80 0 chr9 33418550 33418600 -108852844 - MER41A-int LTR ERV1 -3726 2220 2167 * 819 85 144 10 chr9 33418576 33418731 -108852713 - MER41A-int LTR ERV1 -3929 2017 1503 * 4415 161 87 30 chr9 33418718 33420314 -108851130 - MER41A-int LTR ERV1 -4171 1775 3 3614 96 36 11 chr9 33420398 33420921 -108850523 - MER41A LTR ERV1 0 554 19 354 143 0 0 chr9 33421234 33421297 -108850147 + (CA)n Simple_repeat Simple_repeat 1 63 0 1895 226 64 2 chr9 33421401 33421825 -108849619 - MER82 DNA MER2_type 0 653 204 240 310 9 9 chr9 33422077 33422193 -108849251 + Tigger2 DNA MER2_type 757 1120 -1598 3534 158 11 6 chr9 33422317 33422965 -108848479 + MER50 LTR ERV1 1 711 -23 608 231 0 0 chr9 33422967 33423084 -108848360 - MER82 DNA MER2_type -527 126 10 2084 130 0 3 chr9 33423230 33423531 -108847913 + AluSg SINE Alu 1 300 -10 22 35 0 0 chr9 33424606 33424635 -108846809 + AT_rich Low_complexity Low_complexity 1 29 0 1006 295 84 75 chr9 33424862 33425519 -108845925 - MLT2F LTR ERVL 0 663 1 1109 233 8 8 chr9 33426143 33426383 -108845061 - LTR47B LTR ERVL 0 443 204 24 0 0 0 chr9 33427409 33427433 -108844011 + AT_rich Low_complexity Low_complexity 1 24 0 420 354 57 60 chr9 33427673 33428337 -108843107 + L2 LINE L2 1632 2293 -1021 1998 151 25 25 chr9 33428409 33428596 -108842848 + L1PA16 LINE L1 5802 5991 -175 1824 151 178 6 chr9 33428596 33428961 -108842483 - MSTA LTR MaLR 0 428 1 1998 151 25 25 chr9 33428961 33429138 -108842306 + L1PA16 LINE L1 5990 6166 0 252 319 28 7 chr9 33431457 33431601 -108839843 + HAL1b LINE L1 432 578 -770 399 253 123 25 chr9 33432535 33432697 -108838747 - MIR SINE MIR -1 261 84 2436 126 6 6 chr9 33432961 33433325 -108838119 - THE1B LTR MaLR 0 364 1 29 0 0 0 chr9 33433467 33433496 -108837948 + AT_rich Low_complexity Low_complexity 1 29 0 942 294 54 11 chr9 33434721 33435000 -108836444 - MER45C DNA AcHobo -655 298 8 1301 298 108 25 chr9 33435808 33436724 -108834720 - HAL1 LINE L1 -29 2478 1487 408 278 94 13 chr9 33436756 33436990 -108834454 - HAL1 LINE L1 -1167 1340 1088 493 303 82 22 chr9 33437215 33437446 -108833998 - HAL1 LINE L1 -2242 265 21 1014 315 30 36 chr9 33437533 33438215 -108833229 + L1M2 LINE L1 9 1160 -6425 361 345 49 31 chr9 33438637 33438924 -108832520 - MLT1J LTR MaLR -204 307 16 511 299 0 8 chr9 33439674 33439808 -108831636 - MER5A DNA MER1_type -2 187 55 2037 109 22 47 chr9 33440075 33440396 -108831048 + AluSq SINE Alu 1 313 0 2137 246 15 30 chr9 33440667 33441346 -108830098 - L1M4 LINE L1 -987 5159 4491 302 346 0 0 chr9 33442176 33442283 -108829161 + L2 LINE L2 2200 2306 -1008 834 282 127 42 chr9 33442688 33443216 -108828228 - MER90 LTR ERV1 -2 573 1 2109 127 0 13 chr9 33444324 33444639 -108826805 + AluSx SINE Alu 1 311 -1 198 0 0 0 chr9 33444970 33444992 -108826452 + (TG)n Simple_repeat Simple_repeat 2 23 0 2097 158 13 16 chr9 33446483 33446857 -108824587 - THE1C LTR MaLR 0 375 3 9655 128 10 65 chr9 33446859 33448532 -108822912 - THE1C-int LTR MaLR 0 1580 1 2162 153 11 24 chr9 33448532 33448912 -108822532 - THE1C LTR MaLR 0 375 1 1811 286 58 62 chr9 33450465 33451307 -108820137 + L1M1 LINE L1 73 911 -6654 2659 166 22 2 chr9 33451317 33451817 -108819627 + L1MA6 LINE L1 5787 6296 -4 2200 105 10 0 chr9 33451913 33452208 -108819236 - AluSq SINE Alu -15 298 1 1567 198 71 40 chr9 33452523 33452902 -108818542 - MSTD LTR MaLR 0 396 6 199 54 54 0 chr9 33453057 33453094 -108818350 + (TG)n Simple_repeat Simple_repeat 1 39 0 1565 207 52 3 chr9 33454101 33454444 -108817000 + MLT1A1 LTR MaLR 4 363 -2 1615 174 68 0 chr9 33455221 33455502 -108815942 - AluJb SINE Alu -12 300 1 1407 65 107 9 chr9 33457496 33457711 -108813733 - L1MA2 LINE L1 0 6304 6069 4484 106 20 42 chr9 33457712 33458479 -108812965 - L1MA2 LINE L1 -78 6226 5477 6592 204 40 6 chr9 33458487 33459770 -108811674 - L1M1 LINE L1 -6230 1335 9 21 0 0 0 chr9 33459808 33459829 -108811615 + AT_rich Low_complexity Low_complexity 1 21 0 546 16 0 0 chr9 33460503 33460566 -108810878 + (TA)n Simple_repeat Simple_repeat 2 64 0 23 0 0 0 chr9 33461204 33461227 -108810217 + AT_rich Low_complexity Low_complexity 1 23 0 2578 107 6 3 chr9 33462720 33463083 -108808361 + THE1B LTR MaLR 1 364 0 262 322 0 0 chr9 33463609 33463696 -108807748 + L1ME LINE L1 5733 5819 -302 746 329 32 7 chr9 33463772 33464055 -108807389 - L2 LINE L2 -1249 2065 1776 31721 126 15 45 chr9 33464056 33464915 -108806529 - L1PA7 LINE L1 0 6154 5271 2349 76 0 10 chr9 33464915 33465217 -108806227 - AluY SINE Alu -12 299 1 31721 126 15 45 chr9 33465217 33468186 -108803258 - L1PA7 LINE L1 -883 5271 2586 184 29 29 29 chr9 33468186 33468220 -108803224 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 31721 126 15 45 chr9 33468220 33470720 -108800724 - L1PA7 LINE L1 -3568 2586 12 389 312 103 62 chr9 33470725 33471228 -108800216 - L2 LINE L2 -1527 1787 1264 1713 268 52 23 chr9 33471554 33472073 -108799371 + MLT1F LTR MaLR 7 540 -2 1808 190 36 30 chr9 33472330 33472693 -108798751 - MLT1A1 LTR MaLR 0 365 1 666 233 63 34 chr9 33473208 33473414 -108798030 - L2 LINE L2 0 3313 3102 181 0 0 65 chr9 33474516 33474547 -108796897 + (TAAAAA)n Simple_repeat Simple_repeat 2 30 0 483 262 48 19 chr9 33475114 33475330 -108796114 - MER106B DNA MER1_type -17 1042 3 404 235 162 0 chr9 33475656 33475792 -108795652 + L1ME LINE L1 5607 5764 -398 463 234 51 56 chr9 33475915 33476131 -108795313 + L1ME3 LINE L1 5717 5931 -233 267 234 47 0 chr9 33476234 33476298 -108795146 + L1ME3 LINE L1 6088 6154 -8 * 4026 189 43 19 chr9 33476296 33477062 -108794382 + L1 LINE L1 3885 4681 -1465 243 61 0 0 chr9 33477062 33477095 -108794349 + (CA)n Simple_repeat Simple_repeat 2 34 0 4026 189 43 19 chr9 33477095 33477293 -108794151 + L1 LINE L1 4681 4873 -1273 993 236 19 75 chr9 33477292 33477363 -108794081 - L1 LINE L1 -899 5247 5174 * 1869 154 116 43 chr9 33477363 33477759 -108793685 - MSTA LTR MaLR -3 425 1 993 236 19 75 chr9 33477759 33478047 -108793397 - L1 LINE L1 -972 5174 4908 320 0 25 0 chr9 33478726 33478766 -108792678 + (TG)n Simple_repeat Simple_repeat 1 41 0 430 275 75 44 chr9 33479048 33479208 -108792236 + MIR SINE MIR 3 167 -95 1621 229 63 38 chr9 33479305 33479781 -108791663 - MLT1D LTR MaLR -17 488 1 3680 118 15 11 chr9 33479822 33480347 -108791097 - MER1A DNA MER1_type 0 527 1 298 208 142 19 chr9 33482003 33482109 -108789335 + MER53 DNA DNA 1 119 -70 338 305 96 27 chr9 33482622 33482793 -108788651 - MIR SINE MIR -67 141 15 357 299 172 0 chr9 33483145 33483279 -108788165 - MIR SINE MIR -25 237 81 226 154 115 19 chr9 33483288 33483340 -108788104 - LTR3b LTR ERVK -152 348 292 259 167 0 0 chr9 33483382 33483424 -108788020 - MER91 DNA MER1_type -98 42 1 22 35 0 0 chr9 33484976 33485005 -108786439 + AT_rich Low_complexity Low_complexity 1 29 0 2793 132 26 20 chr9 33485005 33485460 -108785984 - L1PA14 LINE L1 -3 6158 5701 473 155 0 48 chr9 33486561 33486645 -108784799 + Tigger3(Golem) DNA MER2_type 1 80 -2949 2237 76 0 20 chr9 33487809 33488111 -108783333 + AluY SINE Alu 1 296 -15 387 0 0 0 chr9 33488560 33488603 -108782841 + (TTTTG)n Simple_repeat Simple_repeat 5 47 0 669 212 118 6 chr9 33488687 33488857 -108782587 + MIR SINE MIR 63 251 -11 279 221 13 4 chr9 33489940 33490174 -108781270 + (CA)n Simple_repeat Simple_repeat 1 236 0 204 264 17 0 chr9 33490224 33490398 -108781046 + (CA)n Simple_repeat Simple_repeat 1 177 0 207 182 0 0 chr9 33490807 33490840 -108780604 + (CA)n Simple_repeat Simple_repeat 2 34 0 2584 36 0 0 chr9 33490927 33491233 -108780211 - AluY SINE Alu -5 306 1 870 183 151 0 chr9 33491701 33491891 -108779553 + MIR SINE MIR 45 262 0 626 274 93 65 chr9 33492351 33492599 -108778845 + MLT1K LTR MaLR 225 479 -109 201 260 98 116 chr9 33493375 33493548 -108777896 - MER5A DNA MER1_type 0 189 20 484 237 28 84 chr9 33493558 33493773 -108777671 - MER112 DNA MER1_type -40 220 18 183 156 0 0 chr9 33495020 33495052 -108776392 + GA-rich Low_complexity Low_complexity 3 34 0 3331 146 22 22 chr9 33495941 33495993 -108775451 - L1MB3 LINE L1 0 6183 6132 2081 112 3 3 chr9 33495993 33496288 -108775156 - AluSq SINE Alu -18 295 1 3331 146 22 22 chr9 33496288 33496824 -108774620 - L1MB3 LINE L1 -50 6133 5595 543 306 32 5 chr9 33498417 33498603 -108772841 - L2 LINE L2 -3 3310 3120 852 289 54 31 chr9 33498647 33499000 -108772444 + MLT1I LTR MaLR 35 395 -14 1824 144 3 28 chr9 33499000 33499320 -108772124 - AluJb SINE Alu 0 312 1 1492 141 147 12 chr9 33499383 33499717 -108771727 - Charlie1 DNA MER1_type -40 2721 2343 270 240 13 67 chr9 33499715 33499790 -108771654 - Charlie1 DNA MER1_type -2690 71 1 * 5180 196 65 73 chr9 33500594 33500832 -108770612 - L1MC4 LINE L1 0 8042 7803 2192 75 0 0 chr9 33500832 33501144 -108770300 - AluSc SINE Alu 0 312 1 5180 196 65 73 chr9 33501144 33502711 -108768733 - L1MC4 LINE L1 -239 7803 6172 185 346 51 0 chr9 33505046 33505124 -108766320 + MIR SINE MIR 102 183 -79 230 310 0 0 chr9 33505748 33505819 -108765625 + L2 LINE L2 3200 3270 -2 561 209 87 26 chr9 33506297 33506449 -108764995 + MIR SINE MIR 26 184 -63 1486 156 27 40 chr9 33507265 33507566 -108763878 + AluJb SINE Alu 14 310 -2 467 298 35 0 chr9 33507646 33507787 -108763657 - MIR SINE MIR -82 180 35 236 322 156 30 chr9 33508104 33508303 -108763141 + L2 LINE L2 2739 2962 -352 774 202 79 53 chr9 33508471 33508699 -108762745 + MLT1D LTR MaLR 2 235 -270 568 242 112 60 chr9 33508900 33509169 -108762275 - MER102b DNA MER1_type -1 340 58 575 266 114 13 chr9 33511597 33511943 -108759501 + MLT1J LTR MaLR 38 462 -49 504 128 13 0 chr9 33512126 33512204 -108759240 - MADE1 DNA Mariner 0 80 2 1053 39 78 0 chr9 33512212 33512341 -108759103 - MER85 DNA T2_type 0 139 1 517 278 156 9 chr9 33512341 33512553 -108758891 - MIR SINE MIR -18 244 2 390 279 41 14 chr9 33512924 33513071 -108758373 + L2 LINE L2 2913 3063 -209 430 282 61 0 chr9 33514737 33514868 -108756576 + MIR SINE MIR 8 146 -116 491 238 177 18 chr9 33515147 33515311 -108756133 - MIR SINE MIR -45 217 28 276 208 158 10 chr9 33515869 33515970 -108755474 - MIR SINE MIR -77 131 16 366 269 23 0 chr9 33516841 33516951 -108754493 + MIR SINE MIR 9 122 -86 739 303 94 21 chr9 33517377 33517579 -108753865 - L1MEc LINE L1 -4314 2082 1896 2137 87 0 7 chr9 33517579 33517877 -108753567 + L1PA14 LINE L1 5866 6161 0 739 303 94 21 chr9 33517877 33518142 -108753302 - L1MEc LINE L1 -4500 1896 1581 3815 242 37 15 chr9 33518148 33519231 -108752213 + L1M4 LINE L1 3951 5057 -1089 2217 116 0 0 chr9 33520444 33520755 -108750689 + AluSx SINE Alu 1 311 -1 225 315 31 47 chr9 33521337 33521464 -108749980 - L2 LINE L2 -220 3052 2928 244 330 143 19 chr9 33521682 33521891 -108749553 + L2 LINE L2 3035 3269 -3 308 254 91 27 chr9 33524276 33524386 -108747058 - L2 LINE L2 -2 3311 3195 379 244 0 33 chr9 33524547 33524637 -108746807 - MIR SINE MIR -101 161 75 * 571 263 82 6 chr9 33524635 33524806 -108746638 + MIR SINE MIR 78 261 -1 592 250 10 66 chr9 33525945 33526141 -108745303 + MIR SINE MIR 31 215 -47 594 262 148 61 chr9 33528971 33529482 -108741962 - LTR33A LTR ERVL -2 521 1 250 233 83 0 chr9 33529891 33529951 -108741493 + MIR SINE MIR 124 188 -74 22 0 0 0 chr9 33530231 33530253 -108741191 + AT_rich Low_complexity Low_complexity 1 22 0 561 226 0 0 chr9 33530784 33530930 -108740514 + (CA)n Simple_repeat Simple_repeat 2 147 0 1497 227 46 49 chr9 33531346 33531777 -108739667 + MER63B DNA MER1_type 7 436 0 212 265 154 26 chr9 33531934 33532051 -108739393 - MIR3 SINE MIR -53 155 75 184 171 122 0 chr9 33533732 33533773 -108737671 - L2 LINE L2 -17 3255 3210 697 298 41 5 chr9 33534217 33534435 -108737009 + MIR SINE MIR 20 245 -17 221 297 0 40 chr9 33536050 33536124 -108735320 - MIR SINE MIR -111 151 81 227 250 144 94 chr9 33537633 33537793 -108733651 + MIR SINE MIR 16 183 -79 1204 222 89 9 chr9 33538320 33538635 -108732809 + L1ME3A LINE L1 5826 6165 -5 536 185 0 0 chr9 33538702 33538794 -108732650 + AluJ/FLAM SINE Alu 2 93 -219 488 152 209 29 chr9 33539134 33539239 -108732205 + MER20 DNA MER1_type 2 125 -94 253 296 12 0 chr9 33539246 33539327 -108732117 + L2 LINE L2 3227 3308 -5 420 339 24 6 chr9 33540241 33540406 -108731038 + MER5A DNA MER1_type 3 170 -19 269 183 17 0 chr9 33540406 33540466 -108730978 + (CATA)n Simple_repeat Simple_repeat 4 64 0 3398 168 23 26 chr9 33540469 33540573 -108730871 - L1MB4 LINE L1 -17 6163 6060 252 0 0 0 chr9 33540573 33540601 -108730843 + (TG)n Simple_repeat Simple_repeat 1 28 0 1962 112 4 0 chr9 33540601 33540879 -108730565 - AluSx SINE Alu -33 279 1 3398 168 23 26 chr9 33540879 33541463 -108729981 - L1MB4 LINE L1 -118 6062 5476 1086 170 0 21 chr9 33541470 33541669 -108729775 - MER6A DNA MER2_type -539 66 -10 204 216 0 0 chr9 33541702 33541739 -108729705 + MER5A DNA MER1_type 148 184 -5 215 359 146 0 chr9 33542957 33543060 -108728384 - MIR SINE MIR -2 260 143 261 167 0 37 chr9 33543083 33543137 -108728307 - LTR33A LTR ERVL -25 498 447 234 241 37 0 chr9 33543412 33543466 -108727978 - LTR67 LTR ERVL -387 170 115 281 270 144 9 chr9 33543522 33543633 -108727811 - MIR SINE MIR -117 145 20 514 278 68 17 chr9 33544025 33544201 -108727243 - MIR SINE MIR -60 202 18 273 383 57 0 chr9 33544516 33544657 -108726787 - MIR3 SINE MIR -25 183 35 489 242 23 15 chr9 33544797 33544929 -108726515 + L1ME3A LINE L1 6038 6170 0 1251 241 73 48 chr9 33545177 33545616 -108725828 + MLT1J2 LTR MaLR 1 450 0 2022 112 61 0 chr9 33546616 33546910 -108724534 - AluSq SINE Alu -1 312 1 552 196 19 25 chr9 33547809 33547967 -108723477 + MER96B DNA MER1_type? 7 163 -254 3999 171 186 88 chr9 33547982 33548723 -108722721 + L1MC3 LINE L1 6291 6958 -827 232 303 11 45 chr9 33548723 33548812 -108722632 + MLT1F1 LTR MaLR 37 122 -445 3999 171 186 88 chr9 33548812 33549344 -108722100 + L1MC3 LINE L1 6958 7785 0 24 67 0 0 chr9 33549411 33549456 -108721988 + AT_rich Low_complexity Low_complexity 1 45 0 513 302 88 55 chr9 33549507 33549871 -108721573 + L1MCa LINE L1 1970 2351 -4081 1957 254 91 18 chr9 33549907 33550806 -108720638 + L1MCa LINE L1 2425 3389 -3037 1451 317 70 2 chr9 33551702 33552160 -108719284 + LTR16C LTR ERVL 1 489 -2 648 315 24 58 chr9 33552163 33552645 -108718799 + L1MEc LINE L1 1102 1564 -4832 790 173 8 0 chr9 33552645 33552772 -108718672 + FLAM_A SINE Alu 1 128 -5 648 315 24 58 chr9 33552772 33552842 -108718602 + L1MEc LINE L1 1564 1635 -4761 279 314 16 8 chr9 33552867 33552988 -108718456 + L1ME LINE L1 42 163 -5907 747 260 85 60 chr9 33553054 33553666 -108717778 + L1ME LINE L1 463 1089 -4981 6225 231 47 41 chr9 33553672 33554133 -108717311 + L1ME LINE L1 2945 3402 -2696 1279 129 17 21 chr9 33554133 33554373 -108717071 + L1MB3 LINE L1 5944 6182 -1 6225 231 47 41 chr9 33554373 33556095 -108715349 + L1ME LINE L1 3402 5218 -880 6712 52 31 6 chr9 33556095 33557174 -108714270 + L1PA6 LINE L1 5054 6154 0 6225 231 47 41 chr9 33557174 33557495 -108713949 + L1ME LINE L1 5218 5536 -562 234 74 9 259 chr9 33557514 33557622 -108713822 - L1PB3 LINE L1 -1 6153 6073 3723 53 40 4 chr9 33557724 33558198 -108713246 + L1PA6 LINE L1 5664 6154 0 649 207 29 8 chr9 33558199 33558509 -108712935 + L1ME2 LINE L1 5196 5591 -573 32 0 0 0 chr9 33558510 33558542 -108712902 + AT_rich Low_complexity Low_complexity 1 32 0 1124 112 0 129 chr9 33558542 33558775 -108712669 - L1PB3 LINE L1 -1 6153 5951 * 2087 244 32 14 chr9 33558772 33559338 -108712106 + L1ME2 LINE L1 5579 6154 -10 310 197 88 22 chr9 33559367 33559504 -108711940 + L1MC5 LINE L1 7770 7915 -46 533 260 62 40 chr9 33559520 33560036 -108711408 + L1ME3A LINE L1 1630 2260 -3955 2198 108 3 0 chr9 33560036 33560342 -108711102 + AluSq SINE Alu 1 307 -6 533 260 62 40 chr9 33560342 33560663 -108710781 + L1ME3A LINE L1 2260 2572 -3643 1551 287 86 13 chr9 33560733 33561568 -108709876 + L1ME3A LINE L1 2539 3434 -2781 846 169 22 0 chr9 33561580 33561716 -108709728 + MLT1A2 LTR MaLR 236 374 0 282 243 175 0 chr9 33561716 33561819 -108709625 + L1M4 LINE L1 4812 4932 -1214 284 178 68 27 chr9 33561910 33561983 -108709461 - L1ME3 LINE L1 0 6162 6087 306 253 126 0 chr9 33561983 33562070 -108709374 - L1ME2 LINE L1 -132 6032 5935 271 273 18 36 chr9 33562741 33562851 -108708593 + L1M4 LINE L1 5075 5182 -964 1881 198 53 116 chr9 33562855 33563236 -108708208 + L1ME3A LINE L1 4539 4943 -1272 10415 40 11 51 chr9 33563236 33564669 -108706775 - SVA Other Other -9 1377 2 1881 198 53 116 chr9 33564669 33564917 -108706527 + L1ME3A LINE L1 4943 5117 -1098 1649 164 9 31 chr9 33564917 33565235 -108706209 + AluSx SINE Alu 1 311 -1 1881 198 53 116 chr9 33565235 33565346 -108706098 + L1ME3A LINE L1 5117 5233 -982 1603 214 26 24 chr9 33565349 33565728 -108705716 + L1ME3A LINE L1 5860 6239 0 585 253 65 23 chr9 33565727 33566079 -108705365 + L1M4 LINE L1 3095 3461 -2685 * 3477 258 60 24 chr9 33566069 33567485 -108703959 - L1MC4a LINE L1 -1190 6618 5305 1959 151 3 13 chr9 33567501 33567813 -108703631 - AluJb SINE Alu -3 309 1 1502 176 24 110 chr9 33567829 33568238 -108703206 + MLT1A2 LTR MaLR 1 374 0 2548 53 0 3 chr9 33568332 33568634 -108702810 - AluY SINE Alu -10 301 1 2072 156 36 3 chr9 33568650 33569040 -108702404 - Charlie1a DNA MER1_type -410 1045 643 1288 178 32 36 chr9 33569046 33569103 -108702341 - Charlie1a DNA MER1_type -2470 291 235 351 0 0 0 chr9 33569103 33569142 -108702302 + (TG)n Simple_repeat Simple_repeat 1 39 0 1288 178 32 36 chr9 33569142 33569365 -108702079 - Charlie1a DNA MER1_type -2526 235 12 1251 153 5 0 chr9 33569587 33569776 -108701668 - AluSx SINE Alu -122 190 1 2151 200 44 38 chr9 33569889 33570394 -108701050 + Charlie1a DNA MER1_type 1 508 -947 1037 157 100 32 chr9 33570394 33570643 -108700801 + ORSL DNA AcHobo 1 266 -9 253 231 0 31 chr9 33570620 33570685 -108700759 + Charlie1a DNA MER1_type 475 537 -918 * 551 126 219 8 chr9 33570714 33570833 -108700611 - ORSL DNA AcHobo -130 145 2 4195 174 27 13 chr9 33570840 33571733 -108699711 + Charlie1a DNA MER1_type 539 1443 -12 1131 311 85 15 chr9 33572452 33572912 -108698532 + L2 LINE L2 2822 3313 0 190 167 62 0 chr9 33573068 33573116 -108698328 - MIR SINE MIR -74 188 138 23 78 0 0 chr9 33573869 33573920 -108697524 + GC_rich Low_complexity Low_complexity 1 51 0 22 70 0 0 chr9 33573993 33574036 -108697408 + GC_rich Low_complexity Low_complexity 1 43 0 310 326 171 29 chr9 33576387 33576731 -108694713 - L2 LINE L2 -6 3266 2874 220 292 0 15 chr9 33578368 33578433 -108693011 - L2 LINE L2 -25 3247 3184 1045 234 194 14 chr9 33579798 33580165 -108691279 + MLT1J2 LTR MaLR 1 433 -17 679 323 10 0 chr9 33580282 33580480 -108690964 - MIR SINE MIR -55 207 8 194 301 116 20 chr9 33581072 33581218 -108690226 - L2 LINE L2 -270 3002 2843 214 331 32 24 chr9 33581544 33581668 -108689776 - L2 LINE L2 -976 2338 2214 1446 258 129 83 chr9 33584371 33585410 -108686034 - L1MC4a LINE L1 -1 7807 6721 256 328 76 15 chr9 33585472 33585603 -108685841 - MIR3 SINE MIR -52 156 18 310 330 37 16 chr9 33586080 33586249 -108685195 + MIR SINE MIR 34 205 -57 28 29 0 0 chr9 33586725 33586760 -108684684 + AT_rich Low_complexity Low_complexity 1 35 0 533 245 67 97 chr9 33587237 33587535 -108683909 - L2 LINE L2 -18 3254 2966 557 266 162 9 chr9 33588286 33588508 -108682936 + MIR SINE MIR 5 260 -2 570 298 77 10 chr9 33639158 33639467 -108631977 - MLT1J2 LTR MaLR -83 367 29 232 317 89 16 chr9 33640291 33640414 -108631030 + L2 LINE L2 3141 3272 0 216 171 0 0 chr9 33640446 33640481 -108630963 + (CA)n Simple_repeat Simple_repeat 2 36 0 264 229 0 0 chr9 33640962 33641023 -108630421 - MER4-int LTR ERV1 -5443 1155 1095 705 241 128 108 chr9 33641735 33642142 -108629302 + MLT1E3 LTR MaLR 1 415 -209 258 274 105 24 chr9 33643831 33643955 -108627489 - MER117 DNA MER1_type -46 151 18 253 359 39 8 chr9 33643979 33644107 -108627337 - MIR SINE MIR -110 152 21 721 293 26 4 chr9 33644183 33644412 -108627032 + MIR SINE MIR 21 254 -8 302 248 146 38 chr9 33645450 33645556 -108625888 - MIR SINE MIR -63 145 38 996 184 110 18 chr9 33645602 33645820 -108625624 + MLT1E3 LTR MaLR 1 238 -386 231 206 27 14 chr9 33646126 33646199 -108625245 + (TA)n Simple_repeat Simple_repeat 2 75 0 1191 140 95 9 chr9 33648468 33648689 -108622755 + L1PA16 LINE L1 5926 6165 -1 279 331 40 0 chr9 33649165 33649289 -108622155 - L1MC/D LINE L1 -2226 5582 5454 49 43 0 0 chr9 33651222 33651292 -108620152 + AT_rich Low_complexity Low_complexity 1 70 0 231 204 0 0 chr9 33651438 33651492 -108619952 + (CA)n Simple_repeat Simple_repeat 2 55 0 646 271 23 0 chr9 33652516 33652693 -108618751 + L1M4 LINE L1 1480 1660 -4724 * 1741 252 36 2 chr9 33652692 33653161 -108618283 + L1M4 LINE L1 3970 4454 -1928 453 328 118 41 chr9 33654338 33654426 -108617018 - L3 LINE CR1 -872 705 625 2316 47 30 14 chr9 33654426 33654722 -108616722 + AluY SINE Alu 1 301 -10 453 328 118 41 chr9 33654722 33654971 -108616473 - L3 LINE CR1 -952 625 342 952 266 21 62 chr9 33656276 33656614 -108614830 - L2 LINE L2 -965 2349 2026 399 379 21 7 chr9 33656695 33656977 -108614467 - L1MEc LINE L1 -6077 319 34 187 143 0 0 chr9 33657581 33657609 -108613835 - L2 LINE L2 -17 3296 3269 2786 195 62 114 chr9 33658375 33659328 -108612116 - Charlie1a DNA MER1_type -1328 1433 547 8212 52 1 0 chr9 33659328 33660293 -108611151 - LTR5 LTR ERVK -3 966 1 2786 195 62 114 chr9 33660293 33660481 -108610963 - Charlie1a DNA MER1_type -2214 547 351 723 262 0 6 chr9 33660470 33660634 -108610810 - Charlie1a DNA MER1_type -1292 163 1 * 259 353 22 15 chr9 33661683 33661819 -108609625 + MIR SINE MIR 112 248 -14 181 365 14 0 chr9 33661949 33662023 -108609421 + L3 LINE CR1 1331 1405 -172 25 51 0 0 chr9 33662187 33662226 -108609218 + AT_rich Low_complexity Low_complexity 1 39 0 184 239 34 68 chr9 33663236 33663324 -108608120 + MIR SINE MIR 58 142 -66 414 290 82 29 chr9 33663608 33663853 -108607591 - MIR SINE MIR -1 261 4 225 355 15 65 chr9 33664045 33664245 -108607199 - MIR3 SINE MIR -12 196 7 22 0 0 0 chr9 33665475 33665497 -108605947 + AT_rich Low_complexity Low_complexity 1 22 0 711 308 65 12 chr9 33665911 33666291 -108605153 - MLT1H LTR MaLR -3 546 14 236 277 141 22 chr9 33666332 33666516 -108604928 + L1MC/D LINE L1 5597 5802 -2006 28 0 0 0 chr9 33666811 33666839 -108604605 + AT_rich Low_complexity Low_complexity 1 28 0 276 247 55 75 chr9 33666944 33667090 -108604354 - L2 LINE L2 -211 3061 2919 221 333 14 28 chr9 33667607 33667679 -108603765 + L2 LINE L2 427 497 -2817 623 216 15 0 chr9 33670555 33670689 -108600755 + L1ME LINE L1 5608 5743 -423 1349 73 21 0 chr9 33670711 33670902 -108600542 - L1PA7 LINE L1 0 6154 5960 1588 182 7 25 chr9 33671647 33671933 -108599511 - AluJo SINE Alu -31 281 1 305 308 62 0 chr9 33672162 33672308 -108599136 - LTR33 LTR ERVL 0 521 367 326 318 130 27 chr9 33672857 33673118 -108598326 - LTR33 LTR ERVL -228 293 6 278 206 103 37 chr9 33673594 33673701 -108597743 - L1ME3 LINE L1 -7 6155 6042 1328 245 164 19 chr9 33673918 33674436 -108597008 + L1MC4 LINE L1 7079 7521 -521 1972 123 13 20 chr9 33674436 33674737 -108596707 - AluSp SINE Alu -12 301 3 1328 245 164 19 chr9 33674737 33674989 -108596455 + L1MC4 LINE L1 7521 8042 0 1556 162 13 6 chr9 33675503 33675854 -108595590 - L1MB1 LINE L1 -640 5528 5173 3716 157 7 13 chr9 33675858 33676534 -108594910 + L1MB1 LINE L1 5497 6168 0 878 271 75 102 chr9 33676598 33677156 -108594288 + MLT1H1 LTR MaLR 5 547 -8 2010 226 51 40 chr9 33677378 33677983 -108593461 - LTR9 LTR ERV1 0 612 1 336 276 112 10 chr9 33678189 33678287 -108593157 + L2 LINE L2 3149 3256 -16 190 227 27 13 chr9 33678297 33678372 -108593072 + GA-rich Low_complexity Low_complexity 4 79 0 470 260 160 13 chr9 33678427 33678577 -108592867 + MER5B DNA MER1_type 1 172 -6 329 362 22 14 chr9 33679391 33679529 -108591915 + L2 LINE L2 3134 3272 0 227 331 90 7 chr9 33680110 33680255 -108591189 - MIR SINE MIR -3 259 103 575 227 88 42 chr9 33682712 33682950 -108588494 - L1M3 LINE L1 -1460 4686 4438 12667 150 32 22 chr9 33682951 33684414 -108587030 - L1PA11 LINE L1 -4 6170 4723 1864 172 33 28 chr9 33684414 33684774 -108586670 - THE1B LTR MaLR -2 362 1 12667 150 32 22 chr9 33684774 33686498 -108584946 - L1PA11 LINE L1 -1451 4723 2935 1813 134 7 0 chr9 33686498 33686774 -108584670 - AluSx SINE Alu 0 312 35 12667 150 32 22 chr9 33686774 33686808 -108584636 - L1PA11 LINE L1 -3239 2935 2903 218 394 170 0 chr9 33687365 33687530 -108583914 + L2 LINE L2 2439 2631 -683 335 337 23 23 chr9 33688669 33688841 -108582603 - L1ME LINE L1 -407 5714 5543 438 139 57 16 chr9 33689656 33689778 -108581666 + CT-rich Low_complexity Low_complexity 4 130 0 541 206 38 46 chr9 33689831 33689962 -108581482 - MER58A DNA MER1_type -15 209 80 354 241 60 90 chr9 33690308 33690441 -108581003 + L1MC4 LINE L1 6575 6703 -1339 295 264 42 0 chr9 33692296 33692368 -108579076 + MIR SINE MIR 110 184 -78 244 235 0 0 chr9 33692460 33692511 -108578933 + (CATATA)n Simple_repeat Simple_repeat 2 52 0 259 226 0 43 chr9 33692512 33692605 -108578839 + L1MC4 LINE L1 6614 6702 -1340 * 314 276 0 19 chr9 33692566 33692671 -108578773 - L1MC4 LINE L1 -1339 6703 6601 577 280 84 3 chr9 33692999 33693342 -108578102 + L1ME3A LINE L1 4967 5337 -809 * 1286 222 85 95 chr9 33693336 33693903 -108577541 + L1ME3A LINE L1 5602 6162 -8 365 295 40 27 chr9 33693931 33694080 -108577364 + L1MEd LINE L1 2 152 -5967 2234 110 10 0 chr9 33694293 33694602 -108576842 + AluSx SINE Alu 1 312 0 320 328 81 11 chr9 33695116 33695290 -108576154 + L1MC4a LINE L1 5766 5951 -1857 374 231 165 44 chr9 33696995 33697177 -108574267 + MLT1J2 LTR MaLR 2 205 -245 235 271 115 66 chr9 33697210 33697332 -108574112 + MLT1J2 LTR MaLR 279 406 -44 661 286 17 17 chr9 33697367 33697542 -108573902 - MER5A DNA MER1_type 0 189 15 352 237 30 69 chr9 33698249 33698380 -108573064 + MIR SINE MIR 9 134 -128 600 211 18 0 chr9 33698502 33698611 -108572833 + MER58A DNA MER1_type 5 115 0 350 148 0 0 chr9 33698618 33698672 -108572772 + MER58A DNA MER1_type 171 224 0 1666 178 5 98 chr9 33699226 33699625 -108571819 - MLT1A1 LTR MaLR -3 362 1 660 259 64 70 chr9 33699762 33700105 -108571339 - MLT1I LTR MaLR 0 409 69 391 260 58 0 chr9 33700303 33700407 -108571037 - MER5B DNA MER1_type 0 178 69 713 247 14 115 chr9 33701852 33702200 -108569244 - MER46C DNA MER2_type -24 314 2 253 167 15 30 chr9 33702907 33702973 -108568471 - L1MEc LINE L1 -5214 1182 1118 1105 288 32 14 chr9 33703028 33703399 -108568045 + L1ME1 LINE L1 34 411 -5985 1244 244 83 47 chr9 33703453 33704134 -108567310 - L1MEc LINE L1 -4785 1430 775 679 249 71 58 chr9 33704138 33704756 -108566688 + L1ME1 LINE L1 2991 6230 -5 388 300 120 7 chr9 33705291 33705441 -108566003 + MIR SINE MIR 80 246 -16 1091 221 108 40 chr9 33705850 33706221 -108565223 + MSTD LTR MaLR 1 396 0 193 297 40 14 chr9 33706442 33706516 -108564928 - MIR SINE MIR -62 146 71 238 253 11 11 chr9 33706981 33707076 -108564368 + GA-rich Low_complexity Low_complexity 2 96 0 667 288 56 14 chr9 33707581 33707796 -108563648 - MIR SINE MIR -30 232 9 436 343 34 0 chr9 33708602 33708777 -108562667 - MIR3 SINE MIR -9 199 19 23 33 0 0 chr9 33709181 33709211 -108562233 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr9 33709503 33709525 -108561919 + AT_rich Low_complexity Low_complexity 1 22 0 1613 82 43 0 chr9 33710153 33710385 -108561059 - L1PA11 LINE L1 0 6174 5933 925 189 12 0 chr9 33710390 33710554 -108560890 - MER2 DNA MER2_type -173 172 7 6609 71 3 9 chr9 33710990 33712100 -108559344 + L1PA7 LINE L1 5048 6152 -2 486 290 91 60 chr9 33712441 33712838 -108558606 + MLT1L LTR MaLR 200 608 -7 257 100 100 0 chr9 33713141 33713191 -108558253 - MLT2A1 LTR ERVL 0 453 399 208 183 0 28 chr9 33713289 33713360 -108558084 + (TA)n Simple_repeat Simple_repeat 1 69 0 2695 86 21 10 chr9 33713376 33713759 -108557685 - MLT2A1 LTR ERVL -57 387 1 359 312 108 31 chr9 33714322 33714401 -108557043 - L1MC/D LINE L1 -867 5445 5374 2249 81 0 29 chr9 33714401 33714708 -108556736 - AluY SINE Alu -13 298 1 359 312 108 31 chr9 33714708 33715151 -108556293 - L1MC/D LINE L1 -938 5374 5254 29 28 0 0 chr9 33715160 33715196 -108556248 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr9 33715761 33715783 -108555661 + AT_rich Low_complexity Low_complexity 1 22 0 921 187 73 4 chr9 33716807 33717146 -108554298 + MSTD LTR MaLR 1 396 0 278 322 85 17 chr9 33718885 33719062 -108552382 + MIR SINE MIR 18 206 -56 29 70 0 0 chr9 33720764 33720821 -108550623 + AT_rich Low_complexity Low_complexity 1 57 0 231 321 27 27 chr9 33720944 33721056 -108550388 + L2 LINE L2 688 799 -2515 192 364 59 0 chr9 33721105 33721223 -108550221 + L2 LINE L2 962 1086 -2228 2088 224 25 7 chr9 33721262 33721695 -108549749 - MER74C LTR ERVL 0 460 20 5447 172 28 17 chr9 33721697 33723025 -108548419 + L1MA5 LINE L1 4963 6300 0 229 357 0 0 chr9 33723082 33723152 -108548292 + L2 LINE L2 1127 1196 -2118 1058 305 144 6 chr9 33723199 33723720 -108547724 + L2 LINE L2 1721 2313 -1001 263 235 106 12 chr9 33723725 33723810 -108547634 + MLT1L LTR MaLR 1 93 -522 1466 299 17 10 chr9 33724335 33724743 -108546701 - LTR16C LTR ERVL -7 484 74 254 361 87 11 chr9 33725040 33725223 -108546221 - ERVL LTR ERVL -601 5163 4967 377 353 52 46 chr9 33725230 33725706 -108545738 - ERVL LTR ERVL -832 4822 4344 264 286 8 88 chr9 33726316 33726445 -108544999 - MIR SINE MIR -68 140 38 1224 246 34 82 chr9 33727789 33728313 -108543131 + LTR53 LTR ERVL 21 519 0 334 262 107 30 chr9 33728837 33729005 -108542439 - L1M4 LINE L1 -1929 4217 4037 299 295 105 21 chr9 33729728 33729823 -108541621 + L2 LINE L2 3197 3299 -14 1517 166 232 27 chr9 33730909 33731276 -108540168 + MLT2B1 LTR ERVL 1 442 -78 231 125 0 0 chr9 33731307 33731347 -108540097 + (TC)n Simple_repeat Simple_repeat 2 41 0 204 275 66 66 chr9 33731576 33731667 -108539777 - L3 LINE CR1 -2 1575 1485 26 64 0 0 chr9 33731972 33732019 -108539425 + AT_rich Low_complexity Low_complexity 1 47 0 27 29 0 0 chr9 33732128 33732162 -108539282 + AT_rich Low_complexity Low_complexity 1 34 0 1595 184 86 89 chr9 33732287 33732836 -108538608 + MLT2B3 LTR ERVL 1 547 -7 23 33 0 0 chr9 33733072 33733102 -108538342 + AT_rich Low_complexity Low_complexity 1 30 0 1351 243 0 0 chr9 33733113 33733393 -108538051 - AluJo SINE Alu -31 281 2 227 242 33 33 chr9 33733479 33733570 -108537874 + L1ME1 LINE L1 4596 4686 -1460 6298 97 40 9 chr9 33733571 33734667 -108536777 - L1PA13 LINE L1 -2 6161 5047 3405 5 8 0 chr9 33734805 33735195 -108536249 - L1PA4 LINE L1 -4 6151 5759 4277 27 2 0 chr9 33735195 33735804 -108535640 + L1PA4 LINE L1 5153 5762 -393 286 354 67 14 chr9 33736069 33736292 -108535152 + L1ME3A LINE L1 5649 5883 -287 2768 250 41 14 chr9 33736786 33737587 -108533857 + L1ME1 LINE L1 5338 6160 -6 183 80 0 0 chr9 33738071 33738096 -108533348 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 231 257 83 55 chr9 33738133 33738242 -108533202 - MIR SINE MIR -98 164 53 208 233 83 0 chr9 33738282 33738342 -108533102 + MIR3 SINE MIR 102 166 -42 242 270 32 0 chr9 33740018 33740081 -108531363 + MLT1H LTR MaLR 23 87 -462 768 333 74 17 chr9 33740937 33741515 -108529929 - L2 LINE L2 -42 3271 2660 378 262 124 64 chr9 33741863 33742065 -108529379 - LTR33A LTR ERVL -345 178 1 1736 296 23 54 chr9 33742338 33743077 -108528367 - L2 LINE L2 -688 2626 1911 1402 293 80 43 chr9 33743082 33743846 -108527598 - HERV16 LTR ERVL -4192 804 13 696 349 31 14 chr9 33743897 33744252 -108527192 - LTR16A LTR ERVL -55 395 35 384 348 61 11 chr9 33745091 33745272 -108526172 - MIR3 SINE MIR -6 202 13 256 398 42 8 chr9 33746538 33746656 -108524788 - L2 LINE L2 -8 3264 3143 22 35 0 0 chr9 33746996 33747025 -108524419 + AT_rich Low_complexity Low_complexity 1 29 0 232 238 25 12 chr9 33747071 33747151 -108524293 - L1ME4a LINE L1 -63 6058 5978 181 152 22 87 chr9 33747155 33747201 -108524243 - L2 LINE L2 0 3313 3271 1541 164 66 14 chr9 33747628 33747915 -108523529 + AluSx SINE Alu 1 302 -10 525 325 13 45 chr9 33748156 33748313 -108523131 + L2 LINE L2 3100 3251 -21 1020 139 36 6 chr9 33749676 33749842 -108521602 + MLT2B1 LTR ERVL 3 173 -347 631 263 78 0 chr9 33749860 33750039 -108521405 + MLT2B2 LTR ERVL 323 515 0 2124 133 36 28 chr9 33750791 33751152 -108520292 - THE1B LTR MaLR 0 364 1 2258 64 10 16 chr9 33751356 33751668 -108519776 + AluY SINE Alu 2 311 0 301 239 69 94 chr9 33752090 33752249 -108519195 - HAL1b LINE L1 -1125 223 69 21 0 0 0 chr9 33753556 33753577 -108517867 + AT_rich Low_complexity Low_complexity 1 21 0 632 104 10 0 chr9 33754202 33754298 -108517146 - L1MB5 LINE L1 -10 6164 6068 435 134 0 0 chr9 33754354 33754421 -108517023 - MADE1 DNA Mariner -12 68 2 1115 211 160 56 chr9 33754870 33754949 -108516495 - Charlie2 DNA MER1_type -309 2553 2484 2302 92 3 16 chr9 33754949 33755264 -108516180 + AluSp SINE Alu 3 313 0 1115 211 160 56 chr9 33755264 33755790 -108515654 - Charlie2 DNA MER1_type -378 2484 1885 565 279 17 6 chr9 33755794 33755966 -108515478 - L1M4 LINE L1 -1211 5577 5404 * 3625 193 31 34 chr9 33755956 33756882 -108514562 - L1M4 LINE L1 -2086 4702 3779 1384 312 53 37 chr9 33757265 33757884 -108513560 - L1M4 LINE L1 -6148 641 13 3909 234 56 28 chr9 33757900 33758300 -108513144 - L1M4 LINE L1 -1956 4688 4301 1460 194 67 0 chr9 33758300 33758416 -108513028 + AluJo SINE Alu 1 108 -204 189 0 0 0 chr9 33758416 33758437 -108513007 + (TAA)n Simple_repeat Simple_repeat 2 22 0 1460 194 67 0 chr9 33758437 33758603 -108512841 + AluJo SINE Alu 108 302 -10 3909 234 56 28 chr9 33758603 33759584 -108511860 - L1M4 LINE L1 -2343 4301 3268 1872 249 83 42 chr9 33759581 33760220 -108511224 - L1M4 LINE L1 -5870 672 8 * 273 29 0 0 chr9 33760867 33760901 -108510543 + (GA)n Simple_repeat Simple_repeat 1 34 0 367 366 60 48 chr9 33761426 33761844 -108509600 + L2 LINE L2 2552 2974 -340 223 338 52 0 chr9 33762003 33762080 -108509364 + L2 LINE L2 3184 3264 -49 213 244 67 22 chr9 33762175 33762265 -108509179 - MIR SINE MIR -50 212 119 220 186 0 0 chr9 33762780 33762823 -108508621 + (TG)n Simple_repeat Simple_repeat 2 44 0 481 250 27 20 chr9 33764021 33764169 -108507275 - L1ME2 LINE L1 -1922 4224 4076 289 294 33 28 chr9 33764172 33764352 -108507092 + L1ME2 LINE L1 4218 4398 -1748 1626 200 20 0 chr9 33764354 33764649 -108506795 + AluJo SINE Alu 1 301 -11 453 297 62 39 chr9 33764694 33765031 -108506413 + L1ME2 LINE L1 5786 6130 -34 1164 172 38 0 chr9 33765175 33765384 -108506060 + AluJb SINE Alu 1 217 -95 22 0 0 0 chr9 33766259 33766281 -108505163 + AT_rich Low_complexity Low_complexity 1 22 0 208 308 56 56 chr9 33766320 33766427 -108505017 + L2 LINE L2 3156 3262 -10 2547 55 0 3 chr9 33766729 33767037 -108504407 + AluY SINE Alu 1 307 -4 29 28 0 0 chr9 33768349 33768385 -108503059 + AT_rich Low_complexity Low_complexity 1 36 0 2051 210 115 0 chr9 33770260 33770713 -108500731 - MLT1D LTR MaLR 0 505 1 289 343 0 28 chr9 33770851 33770959 -108500485 + MIR SINE MIR 16 120 -88 641 235 127 117 chr9 33771736 33772256 -108499188 + MLT1H LTR MaLR 9 533 -16 1944 217 103 110 chr9 33772399 33773147 -108498297 + MER21B LTR ERV1 10 752 -111 310 326 8 0 chr9 33773676 33773805 -108497639 + (TA)n Simple_repeat Simple_repeat 2 131 0 461 214 22 0 chr9 33774016 33774105 -108497339 - MER76 LTR ERV 0 688 598 3884 178 42 30 chr9 33774107 33774568 -108496876 + L1MA9 LINE L1 4249 4703 -1443 2036 39 24 0 chr9 33774568 33774821 -108496623 + L1PA4 LINE L1 5896 6155 0 3884 178 42 30 chr9 33774821 33775262 -108496182 + L1MA9 LINE L1 4703 5162 -984 1032 71 0 8 chr9 33775264 33775391 -108496053 + AluSg SINE Alu 3 128 -182 2895 147 47 56 chr9 33775393 33776005 -108495439 + L1MA9 LINE L1 5632 6238 -74 261 0 0 0 chr9 33776022 33776051 -108495393 + (TAA)n Simple_repeat Simple_repeat 3 31 0 390 238 24 95 chr9 33776089 33776257 -108495187 - MER76 LTR ERV -69 619 464 7575 27 7 0 chr9 33776288 33777794 -108493650 - L1PA3 LINE L1 -1 6154 4642 1875 139 9 54 chr9 33778813 33779129 -108492315 - AluSq SINE Alu -11 302 1 357 186 29 0 chr9 33779397 33779467 -108491977 + MLT1L LTR MaLR 140 211 -404 319 384 0 23 chr9 33779596 33779768 -108491676 + ERVL LTR ERVL 2425 2592 -3172 282 301 142 61 chr9 33780089 33780434 -108491010 + MLT1J2 LTR MaLR 73 445 -5 224 293 13 13 chr9 33781141 33781216 -108490228 + L2 LINE L2 2662 2736 -578 399 271 107 31 chr9 33782802 33783027 -108488417 - LTR33A LTR ERVL -56 467 226 255 326 131 49 chr9 33783147 33783392 -108488052 - LTR33A LTR ERVL -258 265 1 11535 190 50 34 chr9 33784304 33788503 -108482941 - L1MA4A LINE L1 -3 7362 3065 2447 167 17 13 chr9 33788503 33788964 -108482480 - MER4C LTR ERV1 -2 463 1 11535 190 50 34 chr9 33788964 33789894 -108481550 - L1MA4A LINE L1 -4300 3065 2152 2420 118 11 6 chr9 33789895 33790243 -108481201 - THE1B LTR MaLR 0 364 15 326 118 0 0 chr9 33790239 33790290 -108481154 - THE1B LTR MaLR -230 134 84 * 2373 283 111 14 chr9 33790293 33791214 -108480230 - L1MA4A LINE L1 -5537 1672 246 * 4062 173 9 13 chr9 33791212 33791906 -108479538 - THE1-int LTR MaLR -263 1317 627 1124 144 140 22 chr9 33791906 33792135 -108479309 - MSTA LTR MaLR -172 256 1 694 264 35 0 chr9 33792136 33792333 -108479111 - L1MA4A LINE L1 -6979 230 27 205 100 40 0 chr9 33792795 33792845 -108478599 + (TA)n Simple_repeat Simple_repeat 2 53 0 1522 106 0 0 chr9 33793369 33793567 -108477877 - AluSg/x SINE Alu -15 295 98 285 326 61 14 chr9 33794239 33794386 -108477058 + L1MC4a LINE L1 5771 5924 -1884 378 0 0 0 chr9 33794520 33794562 -108476882 + (CA)n Simple_repeat Simple_repeat 2 43 0 33 0 0 0 chr9 33794769 33794802 -108476642 + AT_rich Low_complexity Low_complexity 1 33 0 228 250 0 0 chr9 33795422 33795470 -108475974 + L1MDa LINE L1 655 702 -5838 2818 157 25 4 chr9 33795488 33795973 -108475471 - LOR1a LTR ERV1 -2 495 1 218 179 0 0 chr9 33796168 33796207 -108475237 + (TG)n Simple_repeat Simple_repeat 2 40 0 475 174 0 0 chr9 33796321 33796407 -108475037 + L1PA15-16 LINE L1 1498 1583 -5266 2896 182 18 14 chr9 33796409 33796981 -108474463 + L1PA16 LINE L1 5476 6049 -117 4896 59 11 5 chr9 33796981 33798099 -108473345 + MER11A LTR ERVK 1 1266 0 55634 79 5 2 chr9 33798099 33805294 -108466150 + HERVK11 LTR ERVK 1 7214 -739 5340 254 35 14 chr9 33805300 33807082 -108464362 + L1 LINE L1 2299 4117 -2029 * 8532 135 8 34 chr9 33807058 33808400 -108463044 - THE1C-int LTR MaLR -273 1307 1 2294 148 5 13 chr9 33808400 33808777 -108462667 - THE1C LTR MaLR 0 375 2 1916 159 39 8 chr9 33808779 33809143 -108462301 + L1PA16 LINE L1 5789 6163 -3 1605 151 12 0 chr9 33809144 33809403 -108462041 + L1PB4 LINE L1 5891 6152 -4 259 230 35 46 chr9 33809440 33809527 -108461917 + HAL1 LINE L1 1627 1712 -795 2631 126 3 0 chr9 33810401 33810775 -108460669 - THE1C LTR MaLR 0 375 1 541 268 26 20 chr9 33810803 33810956 -108460488 - MLT1I LTR MaLR -208 201 48 294 180 0 0 chr9 33811623 33811684 -108459760 + (TA)n Simple_repeat Simple_repeat 2 62 0 207 294 0 20 chr9 33811791 33811842 -108459602 + L2 LINE L2 3243 3292 -21 929 165 24 12 chr9 33812128 33812298 -108459146 - MER2 DNA MER2_type -172 173 2 566 254 77 4 chr9 33812683 33812953 -108458491 - L1MB4 LINE L1 -34 6146 5825 202 264 14 14 chr9 33813014 33813086 -108458358 + T-rich Low_complexity Low_complexity 3 74 0 10776 130 25 12 chr9 33814225 33815994 -108455450 + Tigger1 DNA MER2_type 626 2417 -1 231 274 16 32 chr9 33816672 33816796 -108454648 + (CAGAGA)n Simple_repeat Simple_repeat 4 125 0 2022 154 19 47 chr9 33817252 33817616 -108453828 + LTR18A LTR ERVL 2 355 -2 21 36 0 0 chr9 33817761 33817789 -108453655 + AT_rich Low_complexity Low_complexity 1 28 0 255 316 23 30 chr9 33817958 33818091 -108453353 - MLT1L LTR MaLR -8 607 476 330 232 134 108 chr9 33818384 33818578 -108452866 - MLT1L LTR MaLR -414 201 3 218 133 0 22 chr9 33818578 33818623 -108452821 + (CAT)n Simple_repeat Simple_repeat 3 46 0 229 347 0 0 chr9 33818920 33818992 -108452452 + L2 LINE L2 3234 3305 -8 183 129 0 0 chr9 33819449 33819480 -108451964 + (TA)n Simple_repeat Simple_repeat 1 31 0 21 36 0 0 chr9 33820299 33820327 -108451117 + AT_rich Low_complexity Low_complexity 1 28 0 25 65 0 0 chr9 33820566 33820612 -108450832 + AT_rich Low_complexity Low_complexity 1 46 0 21 57 0 0 chr9 33821548 33821583 -108449861 + AT_rich Low_complexity Low_complexity 1 35 0 30 45 0 0 chr9 33821896 33821940 -108449504 + AT_rich Low_complexity Low_complexity 1 44 0 1351 172 27 8 chr9 33822460 33822722 -108448722 + L1MB3 LINE L1 5908 6174 -9 660 203 0 8 chr9 33822752 33822885 -108448559 + FLAM_C SINE Alu 2 133 0 21 57 0 0 chr9 33823391 33823426 -108448018 + AT_rich Low_complexity Low_complexity 1 35 0 1089 260 14 67 chr9 33823689 33824047 -108447397 + MER67D LTR ERV1 1 339 -175 6059 206 26 25 chr9 33824968 33826877 -108444567 + L1MA4 LINE L1 17 1917 -4065 8384 122 42 3 chr9 33826881 33828134 -108443310 + THE1B-int LTR MaLR 280 1580 0 2217 133 33 28 chr9 33828134 33828496 -108442948 + THE1B LTR MaLR 1 364 0 7635 214 38 54 chr9 33828496 33829801 -108441643 + L1MA4 LINE L1 2081 3406 -3076 1638 196 7 17 chr9 33829801 33830092 -108441352 + AluJb SINE Alu 1 288 -24 7635 214 38 54 chr9 33830092 33832956 -108438488 + L1MA4 LINE L1 3406 6116 -366 557 96 0 0 chr9 33832959 33833032 -108438412 - LTR1 LTR ERV1 0 785 713 2695 221 15 38 chr9 33833032 33833635 -108437809 - HUERS-P2 LTR ERV1 -2099 989 401 779 172 42 48 chr9 33833715 33833749 -108437695 - HUERS-P2 LTR ERV1 -2715 373 340 2355 47 10 3 chr9 33833749 33834045 -108437399 - AluY SINE Alu -13 298 1 779 172 42 48 chr9 33834045 33834318 -108437126 - HUERS-P2 LTR ERV1 -2748 340 5 4030 122 37 79 chr9 33834321 33835141 -108436303 - LTR1 LTR ERV1 0 785 1 1580 203 3 29 chr9 33835141 33835516 -108435928 + L1MA4 LINE L1 6116 6480 -2 359 296 166 14 chr9 33835807 33836030 -108435414 + L1ME4a LINE L1 5789 6045 -76 221 132 0 75 chr9 33836117 33836170 -108435274 + (TTTTTA)n Simple_repeat Simple_repeat 1 49 0 22 35 0 0 chr9 33836452 33836481 -108434963 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr9 33836887 33836908 -108434536 + AT_rich Low_complexity Low_complexity 1 21 0 5642 141 14 10 chr9 33837245 33838187 -108433257 - Tigger1 DNA MER2_type 0 2418 1473 1362 181 59 7 chr9 33838188 33838458 -108432986 - AluJo SINE Alu -17 295 12 9070 141 25 2 chr9 33838467 33839919 -108431525 - Tigger1 DNA MER2_type -932 1486 2 918 62 0 0 chr9 33841012 33841124 -108430320 + L1PA7 LINE L1 6033 6144 -10 267 306 104 104 chr9 33842522 33843188 -108428256 + L2 LINE L2 1716 2381 -933 296 363 81 22 chr9 33843612 33843885 -108427559 + L2 LINE L2 2563 2851 -463 * 590 279 36 27 chr9 33843882 33844104 -108427340 + MIR SINE MIR 39 262 0 183 278 62 10 chr9 33844304 33844401 -108427043 - L2 LINE L2 -94 3219 3118 2237 111 3 0 chr9 33844600 33844898 -108426546 + AluSg SINE Alu 3 301 -9 225 0 0 0 chr9 33845386 33845411 -108426033 + (A)n Simple_repeat Simple_repeat 1 25 0 7090 193 134 16 chr9 33845802 33847371 -108424073 + MER52A LTR ERV1 1 1755 0 387 327 51 33 chr9 33849227 33849441 -108422003 + L1MC/D LINE L1 5425 5642 -2166 249 286 57 29 chr9 33849605 33849710 -108421734 - L2 LINE L2 -1292 2022 1915 26 50 0 0 chr9 33849710 33849750 -108421694 + AT_rich Low_complexity Low_complexity 1 40 0 2294 97 0 7 chr9 33851342 33851642 -108419802 + AluSc SINE Alu 1 298 -11 2146 128 0 0 chr9 33851942 33852247 -108419197 + AluSx SINE Alu 1 305 -7 7024 118 2 5 chr9 33852250 33853393 -108418051 + L1MA2 LINE L1 5165 6304 0 3083 164 18 9 chr9 33853893 33854449 -108416995 + MER67C LTR ERV1 150 710 0 275 345 20 20 chr9 33854475 33854623 -108416821 + L2 LINE L2 2631 2778 -536 * 434 252 19 0 chr9 33854622 33854725 -108416719 - MIR SINE MIR -11 251 147 4961 152 23 22 chr9 33855338 33856340 -108415104 + L1PB4 LINE L1 5153 6152 -4 1069 226 124 3 chr9 33856850 33857164 -108414280 - MER119 DNA MER1_type 0 583 232 346 317 111 31 chr9 33857213 33857415 -108414029 + MIR SINE MIR 8 228 -34 180 0 0 0 chr9 33858447 33858467 -108412977 + (A)n Simple_repeat Simple_repeat 1 20 0 522 253 143 11 chr9 33859884 33860066 -108411378 - MIR SINE MIR -34 228 23 422 244 46 30 chr9 33860540 33860671 -108410773 - MER94 DNA DNA 0 134 2 21 36 0 0 chr9 33865254 33865282 -108406162 + AT_rich Low_complexity Low_complexity 1 28 0 219 24 49 24 chr9 33865487 33865528 -108405916 + (TA)n Simple_repeat Simple_repeat 1 42 0 24 0 0 0 chr9 33865766 33865790 -108405654 + AT_rich Low_complexity Low_complexity 1 24 0 324 313 116 25 chr9 33866506 33866704 -108404740 + HAL1b LINE L1 263 478 -870 21 0 0 0 chr9 33866898 33866919 -108404525 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr9 33866988 33867014 -108404430 + AT_rich Low_complexity Low_complexity 1 26 0 27 29 0 0 chr9 33867117 33867151 -108404293 + AT_rich Low_complexity Low_complexity 1 34 0 229 223 91 25 chr9 33867212 33867333 -108404111 + L1M4 LINE L1 4132 4260 -1886 27 49 0 0 chr9 33867360 33867401 -108404043 + AT_rich Low_complexity Low_complexity 1 41 0 292 310 62 18 chr9 33869496 33869609 -108401835 - MIR SINE MIR -131 131 14 295 331 88 14 chr9 33869939 33870087 -108401357 + MIR3 SINE MIR 29 187 -21 26 0 0 0 chr9 33870764 33870790 -108400654 + AT_rich Low_complexity Low_complexity 1 26 0 7227 41 6 0 chr9 33872607 33874227 -108397217 + L1PA5 LINE L1 4517 6143 -11 536 155 0 0 chr9 33874663 33874760 -108396684 - L1MA9 LINE L1 -35 6277 6181 733 99 0 18 chr9 33875346 33875471 -108395973 - L1MA3 LINE L1 -58 6245 6124 675 93 56 0 chr9 33875471 33875577 -108395867 + L1MA3 LINE L1 6192 6305 0 227 228 14 41 chr9 33876608 33876753 -108394691 + (TTA)n Simple_repeat Simple_repeat 2 142 0 981 40 0 16 chr9 33876884 33877010 -108394434 + L1PA6 LINE L1 6027 6150 -4 268 322 0 35 chr9 33877028 33877115 -108394329 + HAL1b LINE L1 462 545 -803 22 35 0 0 chr9 33877552 33877581 -108393863 + AT_rich Low_complexity Low_complexity 1 29 0 2452 66 0 3 chr9 33877619 33877921 -108393523 - AluY SINE Alu -10 301 1 264 343 59 15 chr9 33878227 33878431 -108393013 + L1MC/D LINE L1 5669 5881 -1927 644 169 7 63 chr9 33878731 33878873 -108392571 + AluJo SINE Alu 1 134 -178 25 31 0 0 chr9 33878873 33878905 -108392539 + AT_rich Low_complexity Low_complexity 1 32 0 30 27 0 0 chr9 33878989 33879026 -108392418 + AT_rich Low_complexity Low_complexity 1 37 0 186 103 0 0 chr9 33879211 33879240 -108392204 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 8798 125 29 4 chr9 33879594 33881711 -108389733 + L1PA11 LINE L1 3854 6158 -16 49 60 0 0 chr9 33881917 33882001 -108389443 + AT_rich Low_complexity Low_complexity 1 84 0 21 71 0 0 chr9 33882063 33882105 -108389339 + AT_rich Low_complexity Low_complexity 1 42 0 273 412 8 0 chr9 33882119 33882238 -108389206 + L2 LINE L2 3153 3272 0 750 318 5 9 chr9 33882889 33883103 -108388341 - MIR SINE MIR -15 247 35 188 373 78 0 chr9 33883959 33884061 -108387383 - L2 LINE L2 -51 3221 3112 212 281 0 10 chr9 33884256 33884352 -108387092 + GA-rich Low_complexity Low_complexity 2 96 0 210 253 121 12 chr9 33884548 33884631 -108386813 + MER5B DNA MER1_type 87 178 0 573 188 0 0 chr9 33884708 33884820 -108386624 - L1MB1 LINE L1 -13 6155 6044 227 217 0 33 chr9 33884830 33884890 -108386554 - L1MB1 LINE L1 -91 6077 6020 320 309 75 30 chr9 33886027 33886228 -108385216 + L1ME LINE L1 5562 5771 -350 229 227 61 0 chr9 33886640 33886706 -108384738 + HsTC2 DNA Tc2 224 293 -1605 13736 193 66 16 chr9 33887155 33891351 -108380093 + L1M2 LINE L1 1 4411 -2437 497 296 92 7 chr9 33892034 33892186 -108379258 - MIR SINE MIR -64 198 34 624 265 25 0 chr9 33894114 33894276 -108377168 - L2 LINE L2 -659 2655 2490 305 310 23 54 chr9 33895740 33895869 -108375575 + MIR SINE MIR 16 140 -122 5652 72 1 1 chr9 33895963 33896699 -108374745 - L1PA7 LINE L1 -4 6150 5415 230 322 70 25 chr9 33897127 33897441 -108374003 + L1ME LINE L1 5577 5904 -217 1824 167 60 6 chr9 33897441 33897788 -108373656 - MER47A DNA MER2_type 0 366 1 3598 170 16 3 chr9 33897797 33898404 -108373040 + Tigger7 DNA MER2_type 1 615 -1872 1712 148 65 6 chr9 33898405 33898729 -108372715 + MER61A LTR ERV1 1 343 0 2547 186 46 11 chr9 33898730 33899256 -108372188 + MER61A-int LTR ERV1 2 545 -4672 2489 66 0 0 chr9 33899327 33899629 -108371815 + AluSc SINE Alu 3 304 -5 21 57 0 0 chr9 33900912 33900947 -108370497 + AT_rich Low_complexity Low_complexity 1 35 0 31 96 0 0 chr9 33901459 33901553 -108369891 + AT_rich Low_complexity Low_complexity 1 94 0 374 268 60 38 chr9 33902010 33902193 -108369251 + L1ME LINE L1 5359 5545 -576 285 301 96 45 chr9 33902672 33902871 -108368573 - L1ME3A LINE L1 -1 6169 5961 848 304 91 43 chr9 33902928 33903533 -108367911 - L1ME3A LINE L1 -214 5956 5323 * 2371 309 49 30 chr9 33903526 33904406 -108367038 + L1PA15 LINE L1 6 902 -5885 * 13541 214 27 32 chr9 33904389 33910011 -108361433 + L1PA15 LINE L1 1221 6813 -3 398 274 261 14 chr9 33910067 33910553 -108360891 - L1ME3A LINE L1 -810 5336 4731 23 0 0 0 chr9 33911243 33911266 -108360178 + AT_rich Low_complexity Low_complexity 1 23 0 243 347 40 5 chr9 33911485 33911684 -108359760 + L1 LINE L1 3628 3833 -2313 8164 177 32 12 chr9 33912213 33914757 -108356687 - L1MA5A LINE L1 -8 6289 3691 9398 80 1 2 chr9 33914757 33916806 -108354638 - L1PA4 LINE L1 0 6155 4106 8164 177 32 12 chr9 33916806 33916825 -108354619 - L1MA5A LINE L1 -2606 3691 3674 997 205 9 5 chr9 33917448 33917672 -108353772 + L1MA7 LINE L1 6061 6285 -6 30 59 0 0 chr9 33917868 33917919 -108353525 + AT_rich Low_complexity Low_complexity 1 51 0 25594 69 7 0 chr9 33918430 33921789 -108349655 - L1P LINE L1 -2753 3393 11 21 0 0 0 chr9 33921805 33921826 -108349618 + AT_rich Low_complexity Low_complexity 1 21 0 221 273 169 0 chr9 33922942 33923019 -108348425 + L2 LINE L2 3224 3313 0 296 245 10 31 chr9 33923350 33923448 -108347996 + MIR SINE MIR 27 122 -86 2073 114 14 0 chr9 33924349 33924638 -108346806 - AluSx SINE Alu -19 293 1 238 311 148 8 chr9 33925386 33925508 -108345936 - MIR SINE MIR -122 140 2 805 182 89 53 chr9 33925799 33926024 -108345420 - MER46A DNA MER2_type -2 234 2 346 359 43 0 chr9 33926211 33926328 -108345116 + MIR SINE MIR 33 154 -108 30 59 0 0 chr9 33927084 33927135 -108344309 + AT_rich Low_complexity Low_complexity 1 51 0 458 258 93 41 chr9 33928279 33928473 -108342971 + MIR SINE MIR 24 227 -35 1188 258 105 40 chr9 33928488 33929011 -108342433 - MLT1E1 LTR MaLR 0 654 98 270 0 0 0 chr9 33929041 33929071 -108342373 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 2267 142 11 0 chr9 33929071 33929438 -108342006 - L1PB1 LINE L1 -5 6146 5776 3460 136 17 8 chr9 33929448 33930293 -108341151 + L1PB1 LINE L1 4919 5773 -378 2053 127 3 10 chr9 33930841 33931140 -108340304 + AluSg SINE Alu 1 297 -13 1948 180 31 6 chr9 33931365 33931721 -108339723 + MSTB LTR MaLR 1 365 -61 1039 249 19 8 chr9 33931763 33932020 -108339424 - AluJb SINE Alu -52 260 1 342 138 35 0 chr9 33932025 33932083 -108339361 + MSTB LTR MaLR 366 425 -1 230 310 23 32 chr9 33932173 33932271 -108339173 - MIR SINE MIR -57 151 54 901 133 28 7 chr9 33932758 33932901 -108338543 + MER30 DNA MER1_type 85 230 0 3107 177 25 13 chr9 33932902 33933582 -108337862 - L1 LINE L1 -1901 4245 3472 189 0 0 0 chr9 33933586 33933607 -108337837 + (TG)n Simple_repeat Simple_repeat 2 22 0 227 93 23 0 chr9 33933610 33933653 -108337791 + (TA)n Simple_repeat Simple_repeat 1 44 0 663 200 35 58 chr9 33933653 33933883 -108337561 - L1MDb LINE L1 -4961 1119 896 3332 81 7 2 chr9 33933914 33934347 -108337097 + LTR3b LTR ERVK 3 437 0 563 176 9 9 chr9 33934458 33934566 -108336878 + HERVK3 LTR ERVK 55 162 -7081 * 1129 146 1 1 chr9 33934562 33934756 -108336688 + HERVK3 LTR ERVK 5188 5579 -366 3460 76 7 0 chr9 33934794 33935228 -108336216 + LTR3b LTR ERVK 1 437 0 391 300 20 10 chr9 33935255 33935455 -108335989 - L1MDb LINE L1 -5182 888 687 230 79 0 26 chr9 33935769 33935807 -108335637 + (CAAAA)n Simple_repeat Simple_repeat 4 40 0 635 304 135 97 chr9 33935958 33936956 -108334488 - HAL1 LINE L1 -1375 1132 93 1471 156 71 97 chr9 33936956 33937391 -108334053 + MSTC LTR MaLR 3 426 -2 635 304 135 97 chr9 33937391 33937417 -108334027 - HAL1 LINE L1 -2414 93 69 21 36 0 0 chr9 33939193 33939221 -108332223 + AT_rich Low_complexity Low_complexity 1 28 0 445 230 26 18 chr9 33939229 33939342 -108332102 + MIR SINE MIR 147 260 -2 1390 113 66 14 chr9 33940403 33940616 -108330828 - AluSq SINE Alu -89 224 1 2410 74 3 0 chr9 33941055 33941353 -108330091 + AluSq SINE Alu 1 299 -14 422 146 106 133 chr9 33942115 33942266 -108329178 + MER69 DNA AcHobo 2380 2526 0 277 305 24 18 chr9 33942805 33942969 -108328475 + L1P LINE L1 2161 2325 -3821 262 275 25 0 chr9 33943242 33943322 -108328122 + (TA)n Simple_repeat Simple_repeat 1 82 0 343 108 31 31 chr9 33943495 33943624 -108327820 + (TA)n Simple_repeat Simple_repeat 2 130 0 723 285 160 45 chr9 33943624 33943882 -108327562 + L1M4 LINE L1 2984 3211 -2935 2101 77 0 22 chr9 33943882 33944154 -108327290 + AluSc SINE Alu 35 300 -9 723 285 160 45 chr9 33944154 33944607 -108326837 + L1M4 LINE L1 3211 3777 -2369 1973 132 24 3 chr9 33945813 33946102 -108325342 + AluSx SINE Alu 5 299 -13 2657 128 163 20 chr9 33946102 33946557 -108324887 + MER1A DNA MER1_type 6 525 -4 1746 161 37 3 chr9 33946621 33946920 -108324524 - AluJb SINE Alu 0 312 4 1150 275 57 82 chr9 33948007 33948519 -108322925 - MER45C DNA AcHobo -439 514 16 379 273 125 31 chr9 33948561 33948689 -108322755 + MIR3 SINE MIR 12 151 -57 587 252 145 6 chr9 33948776 33948935 -108322509 + MER5A DNA MER1_type 9 189 0 180 0 0 0 chr9 33950071 33950091 -108321353 + (TC)n Simple_repeat Simple_repeat 2 21 0 755 316 68 28 chr9 33950262 33950512 -108320932 + MER115 DNA AcHobo 61 320 -373 459 210 84 42 chr9 33950714 33950890 -108320554 + MIR SINE MIR 8 193 -63 440 35 17 0 chr9 33950933 33950991 -108320453 + (TCTA)n Simple_repeat Simple_repeat 3 61 0 2279 193 19 14 chr9 33951551 33951976 -108319468 + MER6A DNA MER2_type 1 427 -178 497 115 11 11 chr9 33951977 33952064 -108319380 + L1MA4 LINE L1 6209 6295 -5 1173 123 11 0 chr9 33952115 33952294 -108319150 + MER6A DNA MER2_type 425 605 0 402 252 50 8 chr9 33952462 33952581 -108318863 + MLT2E LTR ERVL 1 124 -504 484 316 79 55 chr9 33954326 33954706 -108316738 - L2 LINE L2 -2 3311 2923 224 375 45 11 chr9 33954762 33954938 -108316506 - L2 LINE L2 -489 2825 2644 1192 53 0 7 chr9 33955818 33955970 -108315474 - L1PA7 LINE L1 -2 6152 6002 198 217 0 0 chr9 33956531 33956600 -108314844 + (TA)n Simple_repeat Simple_repeat 1 69 0 247 239 68 94 chr9 33956875 33956992 -108314452 - L2 LINE L2 -18 3295 3182 1957 148 0 3 chr9 33957084 33957374 -108314070 + AluJb SINE Alu 1 289 -23 530 216 58 47 chr9 33957526 33957716 -108313728 - Charlie1 DNA MER1_type 0 2761 2570 43643 42 1 6 chr9 33957774 33963946 -108307498 - L1PA3 LINE L1 -4 6151 9 4234 215 34 20 chr9 33963954 33965011 -108306433 - Charlie1 DNA MER1_type -214 2547 1476 1083 270 44 100 chr9 33965131 33965394 -108306050 - L1MDa LINE L1 -4341 2380 2104 263 28 28 0 chr9 33965394 33965430 -108306014 + (TTTG)n Simple_repeat Simple_repeat 3 39 0 1083 270 44 100 chr9 33965430 33965815 -108305629 - L1MDa LINE L1 -4617 2104 1699 2000 117 71 31 chr9 33965815 33966165 -108305279 + THE1B LTR MaLR 1 364 0 11613 94 8 2 chr9 33966165 33967736 -108303708 + THE1B-int LTR MaLR 1 1580 0 2181 132 48 25 chr9 33967736 33968092 -108303352 + THE1B LTR MaLR 1 364 0 1083 270 44 100 chr9 33968092 33968520 -108302924 - L1MDa LINE L1 -5019 1702 1298 1894 146 7 0 chr9 33968529 33968839 -108302605 - AluSp SINE Alu 0 312 1 35 24 0 0 chr9 33968887 33968929 -108302515 + AT_rich Low_complexity Low_complexity 1 42 0 2328 191 39 15 chr9 33969678 33970145 -108301299 + Tigger6a DNA MER2_type 1 478 -605 1228 163 21 8 chr9 33970146 33970236 -108301208 - L1M3 LINE L1 -583 5585 5498 1667 170 125 47 chr9 33970236 33970637 -108300807 + MSTB1 LTR MaLR 1 432 0 1228 163 21 8 chr9 33970637 33970785 -108300659 - L1M3 LINE L1 -670 5498 5344 2620 155 34 0 chr9 33970785 33971247 -108300197 + L1MA10 LINE L1 5851 6331 -3 1460 186 15 82 chr9 33971304 33971707 -108299737 + Tigger6a DNA MER2_type 707 1082 -1 551 321 128 45 chr9 33971846 33972313 -108299131 + L2 LINE L2 2805 3310 -3 290 361 90 22 chr9 33972508 33972918 -108298526 + L2 LINE L2 2176 2613 -701 6680 37 10 6 chr9 33973231 33974098 -108297346 - L1PA5 LINE L1 0 6154 5284 1103 230 26 59 chr9 33974102 33974719 -108296725 + L1M3c LINE L1 1294 1930 -4280 2069 151 0 0 chr9 33974719 33975023 -108296421 + AluSx SINE Alu 1 304 -8 1103 230 26 59 chr9 33975023 33975165 -108296279 + L1M3c LINE L1 1930 5208 -1002 2430 159 28 14 chr9 33975166 33975588 -108295856 - MSTA LTR MaLR 0 428 1 7026 172 45 4 chr9 33975588 33976893 -108294551 - MSTA-int LTR MaLR 0 1651 293 4812 151 31 5 chr9 33976912 33977875 -108293569 + L1PA16 LINE L1 5236 6221 -9 1509 246 59 67 chr9 33977882 33978277 -108293167 + L1MA9 LINE L1 2702 3098 -4467 2130 125 10 0 chr9 33978277 33978572 -108292872 - AluSp SINE Alu -15 298 1 1509 246 59 67 chr9 33978572 33978990 -108292454 + L1MA9 LINE L1 3098 3509 -4056 2327 84 3 0 chr9 33978990 33979287 -108292157 - AluY SINE Alu -13 298 1 1509 246 59 67 chr9 33979287 33979449 -108291995 + L1MA9 LINE L1 3509 3671 -3894 * 1967 210 72 15 chr9 33979443 33980043 -108291401 + L1MA9 LINE L1 4065 4698 -2867 5717 202 30 21 chr9 33980072 33982619 -108288825 + L1MA9 LINE L1 5124 7695 -36 358 99 44 44 chr9 33982640 33982731 -108288713 + L1P4 LINE L1 5352 5442 -723 * 895 219 46 119 chr9 33982729 33983560 -108287884 + L1MCa LINE L1 985 1790 -4638 3479 174 73 11 chr9 33983655 33984011 -108287433 + L1MA9 LINE L1 5422 5755 -557 225 0 0 0 chr9 33984011 33984036 -108287408 + (TA)n Simple_repeat Simple_repeat 2 26 0 3479 174 73 11 chr9 33984036 33984462 -108286982 + L1MA9 LINE L1 5755 6252 -60 18551 168 28 6 chr9 33984471 33991901 -108279543 + L1PA11 LINE L1 5 7610 -2 198 0 0 0 chr9 33991926 33991948 -108279496 + (GAAA)n Simple_repeat Simple_repeat 2 23 0 5631 106 50 5 chr9 33991948 33992239 -108279205 + L1PA14 LINE L1 4067 4343 -1818 5631 99 56 0 chr9 33992239 33993935 -108277509 + L1PA14 LINE L1 4410 6152 -9 5631 106 50 5 chr9 33993935 33993970 -108277474 + L1PA14 LINE L1 4343 6152 -9 336 167 14 0 chr9 33993961 33994033 -108277411 + L1MA9 LINE L1 6240 6312 0 * 307 346 60 37 chr9 33994052 33994269 -108277175 + L2 LINE L2 3048 3269 -3 320 309 8 16 chr9 33994864 33994987 -108276457 - MIR SINE MIR -24 238 117 24 91 0 0 chr9 33995281 33995347 -108276097 + AT_rich Low_complexity Low_complexity 1 66 0 245 318 119 29 chr9 33995354 33995665 -108275779 + L2 LINE L2 1700 2038 -1276 22 70 0 0 chr9 33996549 33996592 -108274852 + AT_rich Low_complexity Low_complexity 1 43 0 1106 38 0 0 chr9 33996592 33996724 -108274720 - L1PA3 LINE L1 -3 6152 6021 1748 137 28 4 chr9 33996738 33996993 -108274451 + AluSx SINE Alu 1 261 -51 227 100 0 25 chr9 33996996 33997036 -108274408 + (TAA)n Simple_repeat Simple_repeat 2 40 0 1208 222 34 66 chr9 33997685 33998063 -108273381 + MLT1A2 LTR MaLR 1 366 -8 1782 168 0 14 chr9 33999762 34000042 -108271402 + AluJb SINE Alu 14 289 -23 237 316 0 0 chr9 34000521 34000578 -108270866 - L2 LINE L2 -10 3262 3206 219 218 0 0 chr9 34000901 34000956 -108270488 + (TA)n Simple_repeat Simple_repeat 2 56 0 2047 170 76 34 chr9 34001461 34001985 -108269459 + L1MB7 LINE L1 5628 6173 -11 235 326 184 43 chr9 34002495 34002636 -108268808 - MIR SINE MIR -98 164 4 245 352 69 28 chr9 34003299 34003345 -108268099 + MIR SINE MIR 22 65 -197 2056 166 22 96 chr9 34003345 34003845 -108267599 + MLT2C2 LTR ERVL 2 464 0 245 352 69 28 chr9 34003845 34003943 -108267501 + MIR SINE MIR 65 172 -90 683 264 10 30 chr9 34004047 34004244 -108267200 + Tigger5 DNA MER2_type 118 310 -2013 * 917 157 0 6 chr9 34004243 34004402 -108267042 + Tigger5 DNA MER2_type 2166 2323 0 6501 260 41 44 chr9 34004402 34008081 -108263363 - L1M4 LINE L1 -3809 3358 2 204 175 35 35 chr9 34008301 34008358 -108263086 + (CTTTA)n Simple_repeat Simple_repeat 2 58 0 250 310 0 0 chr9 34008361 34008419 -108263025 - MER2 DNA MER2_type -8 337 280 1107 187 5 0 chr9 34008448 34008657 -108262787 - MER2 DNA MER2_type -135 210 1 665 290 56 39 chr9 34010046 34010277 -108261167 - MIR SINE MIR -19 243 9 22 70 0 0 chr9 34010908 34010951 -108260493 + AT_rich Low_complexity Low_complexity 1 43 0 27 29 0 0 chr9 34011432 34011466 -108259978 + AT_rich Low_complexity Low_complexity 1 34 0 236 207 17 0 chr9 34012015 34012073 -108259371 - MER67D LTR ERV1 -5 509 451 1446 166 57 44 chr9 34012101 34012497 -108258947 - MER67C LTR ERV1 -243 271 1 22 35 0 0 chr9 34012815 34012844 -108258600 + AT_rich Low_complexity Low_complexity 1 29 0 1998 125 50 36 chr9 34013112 34013471 -108257973 - THE1B LTR MaLR 0 364 1 11395 103 7 0 chr9 34013471 34015038 -108256406 - THE1B-int LTR MaLR 0 1580 3 787 171 56 88 chr9 34015044 34015260 -108256184 - THE1B LTR MaLR -4 360 152 21353 112 9 11 chr9 34015271 34018685 -108252759 + L1PA6 LINE L1 12 3419 -2727 836 128 0 0 chr9 34018674 34018807 -108252637 + L1P LINE L1 4790 4922 -1224 * 14356 65 14 0 chr9 34018808 34021554 -108249890 + L1PA6 LINE L1 3416 6148 -6 190 304 0 0 chr9 34021560 34021606 -108249838 - MIR SINE MIR -158 104 59 948 162 30 0 chr9 34021617 34021784 -108249660 - THE1B LTR MaLR -191 173 2 219 189 0 0 chr9 34021842 34021895 -108249549 + A-rich Low_complexity Low_complexity 1 53 0 1324 83 11 0 chr9 34022439 34022619 -108248825 - AluSg/x SINE Alu -2 310 129 1921 122 31 10 chr9 34023131 34023419 -108248025 - AluSg1 SINE Alu -15 294 1 276 188 0 0 chr9 34023515 34023579 -108247865 + CT-rich Low_complexity Low_complexity 1 64 0 207 139 0 0 chr9 34023578 34023614 -108247830 + (CA)n Simple_repeat Simple_repeat 1 36 0 * 3789 61 2 10 chr9 34024188 34024677 -108246767 + L1PA6 LINE L1 5662 6146 -8 7385 32 0 0 chr9 34024931 34026009 -108245435 - L1PA4 LINE L1 -2 6153 5077 329 340 132 37 chr9 34026431 34026811 -108244633 - L2 LINE L2 -451 2863 2448 221 356 77 0 chr9 34026809 34027003 -108244441 - L2 LINE L2 -1777 1537 1329 * 2550 158 6 53 chr9 34027128 34027653 -108243791 + L1MB3 LINE L1 5683 6182 -1 3873 32 4 0 chr9 34028025 34028486 -108242958 - L1PA3 LINE L1 0 6155 5693 1826 13 18 0 chr9 34028486 34028710 -108242734 + L1P LINE L1 4276 4503 -1643 468 350 45 12 chr9 34028897 34029140 -108242304 - MIR SINE MIR -10 252 2 234 0 0 0 chr9 34030764 34030790 -108240654 + (TG)n Simple_repeat Simple_repeat 2 27 0 264 320 73 23 chr9 34030915 34031134 -108240310 - L1ME LINE L1 -302 5819 5590 23 33 0 0 chr9 34031361 34031391 -108240053 + AT_rich Low_complexity Low_complexity 1 30 0 254 283 220 25 chr9 34031419 34031578 -108239866 - L2 LINE L2 -86 3227 3038 10833 137 10 33 chr9 34031881 34032012 -108239432 - L1P LINE L1 -1105 5041 4909 192 77 0 0 chr9 34032012 34032038 -108239406 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 10833 137 10 33 chr9 34032038 34032062 -108239382 - L1P LINE L1 -1237 4909 4886 2064 67 8 0 chr9 34032062 34032330 -108239114 - L1PA7 LINE L1 -7 6147 5878 10833 137 10 33 chr9 34032330 34034091 -108237353 - L1P LINE L1 -1260 4886 3168 419 339 93 36 chr9 34035030 34035278 -108236166 + HAL1 LINE L1 2246 2507 0 3278 188 47 75 chr9 34035872 34036941 -108234503 + MER52A LTR ERV1 16 1008 -311 501 223 25 0 chr9 34036941 34037175 -108234269 + L1MA9 LINE L1 5956 6291 -21 1824 178 3 13 chr9 34037237 34037552 -108233892 - AluJo SINE Alu 0 312 1 21 0 0 0 chr9 34037638 34037659 -108233785 + AT_rich Low_complexity Low_complexity 1 21 0 1236 161 0 5 chr9 34037714 34037913 -108233531 - Tigger5 DNA MER2_type 0 2323 2126 499 227 0 0 chr9 34037930 34038027 -108233417 - Tigger5 DNA MER2_type -2217 106 10 302 330 117 9 chr9 34038323 34038666 -108232778 - L1ME LINE L1 -394 5727 5350 21 0 0 0 chr9 34038680 34038701 -108232743 + AT_rich Low_complexity Low_complexity 1 21 0 313 279 26 51 chr9 34038827 34039043 -108232401 - L1ME LINE L1 -640 5507 5296 401 288 76 60 chr9 34039044 34039360 -108232084 - L1ME LINE L1 -1799 4330 4010 257 236 11 22 chr9 34039360 34039449 -108231995 - L1ME LINE L1 -5059 1060 973 5215 136 23 5 chr9 34039475 34039958 -108231486 - L1PA16 LINE L1 0 6166 5693 2518 60 0 0 chr9 34039958 34040259 -108231185 - AluY SINE Alu -10 301 1 5215 136 23 5 chr9 34040259 34040613 -108230831 - L1PA16 LINE L1 -473 5693 5347 369 0 0 0 chr9 34040613 34040654 -108230790 + (TTA)n Simple_repeat Simple_repeat 2 42 0 5215 136 23 5 chr9 34040654 34041349 -108230095 - L1PA16 LINE L1 -819 5347 4600 3920 207 53 41 chr9 34041349 34042307 -108229137 - MER52A LTR ERV1 0 1755 1 551 229 65 0 chr9 34042307 34042496 -108228948 - L1PA16 LINE L1 -1543 4603 4387 617 238 22 6 chr9 34042503 34042684 -108228760 - L1 LINE L1 -1631 4515 4332 373 348 24 52 chr9 34042711 34043039 -108228405 - L1ME LINE L1 -5357 762 444 27 49 0 0 chr9 34043292 34043333 -108228111 + AT_rich Low_complexity Low_complexity 1 41 0 261 0 0 0 chr9 34043953 34043982 -108227462 + (TG)n Simple_repeat Simple_repeat 2 30 0 5320 114 22 97 chr9 34044008 34044584 -108226860 + Tigger3b DNA MER2_type 3 425 -2604 1951 155 0 10 chr9 34044584 34044887 -108226557 + AluJb SINE Alu 1 300 -12 5320 114 22 97 chr9 34044887 34045638 -108225806 + Tigger3b DNA MER2_type 425 1231 -1 186 133 0 0 chr9 34045638 34045668 -108225776 + (TA)n Simple_repeat Simple_repeat 2 31 0 689 238 61 6 chr9 34046217 34046381 -108225063 - MLT1D LTR MaLR 0 505 333 1736 210 103 19 chr9 34046385 34046919 -108224525 + MLT1D LTR MaLR 1 621 -5 577 168 118 0 chr9 34046956 34047075 -108224369 - MLT1D LTR MaLR -351 154 22 37 39 0 0 chr9 34047678 34047729 -108223715 + AT_rich Low_complexity Low_complexity 1 51 0 615 330 38 8 chr9 34047806 34048045 -108223399 + LTR16A LTR ERVL 205 450 0 435 224 28 0 chr9 34048126 34048233 -108223211 - MIR SINE MIR -22 240 131 6396 141 19 11 chr9 34048413 34048603 -108222841 - L1PB1 LINE L1 0 6151 5964 243 0 0 0 chr9 34048603 34048630 -108222814 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1958 109 11 25 chr9 34048630 34048913 -108222531 - AluSg SINE Alu -31 279 1 6396 141 19 11 chr9 34048913 34050755 -108220689 - L1PB1 LINE L1 -186 5965 4110 1322 219 4 0 chr9 34050855 34051133 -108220311 - L1PB1 LINE L1 -2299 3847 3569 28 0 0 0 chr9 34051199 34051227 -108220217 + AT_rich Low_complexity Low_complexity 1 28 0 373 328 61 44 chr9 34051303 34051599 -108219845 + L1 LINE L1 2840 3140 -3006 541 278 42 42 chr9 34051931 34052122 -108219322 + MIR SINE MIR 71 261 -1 1898 271 107 40 chr9 34052624 34053353 -108218091 + MER69B DNA AcHobo 17 794 -432 1847 169 49 3 chr9 34053353 34053678 -108217766 - MER2 DNA MER2_type 0 345 6 999 205 63 24 chr9 34053690 34054021 -108217423 + MER69B DNA AcHobo 801 1144 -82 493 232 65 0 chr9 34054077 34054215 -108217229 + L1M4 LINE L1 840 986 -5556 286 236 32 32 chr9 34054860 34054983 -108216461 - MER113 DNA MER1_type? -386 135 13 3457 76 0 9 chr9 34055450 34055898 -108215546 - MLT2A1 LTR ERVL 0 444 1 196 290 16 16 chr9 34056206 34056268 -108215176 + MIR3 SINE MIR 133 194 -14 1649 208 0 26 chr9 34057346 34057654 -108213790 - AluJo SINE Alu -12 300 1 241 282 181 13 chr9 34057855 34058004 -108213440 - MIR SINE MIR -3 259 86 2806 123 17 0 chr9 34058184 34058598 -108212846 - MSTA LTR MaLR 0 428 8 409 283 29 43 chr9 34060585 34060723 -108210721 + MER97b DNA MER1_type? 3 138 -915 770 284 139 23 chr9 34060798 34061186 -108210258 + L1ME LINE L1 61 493 -5577 405 268 95 48 chr9 34061303 34061471 -108209973 + L1ME LINE L1 272 447 -5623 1309 256 54 55 chr9 34061473 34062124 -108209320 + L1ME LINE L1 476 1118 -4962 1857 173 3 10 chr9 34062124 34062437 -108209007 + AluJb SINE Alu 1 311 -1 1309 256 54 55 chr9 34062437 34062475 -108208969 + L1ME LINE L1 1118 1155 -4925 2383 76 3 0 chr9 34062562 34062864 -108208580 + AluY SINE Alu 1 303 -8 4154 121 13 1 chr9 34062872 34063550 -108207894 - L1P LINE L1 -2804 3342 2657 2243 97 0 6 chr9 34063550 34063869 -108207575 + L1PA8 LINE L1 5849 6166 -6 865 266 37 32 chr9 34063871 34064273 -108207171 + L1ME LINE L1 1244 1647 -4614 2033 136 0 13 chr9 34064281 34064583 -108206861 + AluSg SINE Alu 1 298 -12 234 160 40 0 chr9 34064689 34064739 -108206705 + L1MC1 LINE L1 6269 6320 -13 405 187 13 0 chr9 34064768 34064843 -108206601 + AluJb SINE Alu 50 125 -187 262 198 0 0 chr9 34064872 34064943 -108206501 + L1ME LINE L1 2060 2170 -3951 4605 84 9 8 chr9 34064953 34065599 -108205845 + L1PA11 LINE L1 5328 5974 -200 288 346 53 30 chr9 34065981 34066114 -108205330 + L2 LINE L2 3136 3271 -1 360 360 90 9 chr9 34067284 34067517 -108203927 + MIR SINE MIR 5 256 -6 402 327 87 19 chr9 34071407 34071719 -108199725 + L1M4 LINE L1 4491 4823 -1323 180 147 0 29 chr9 34072330 34072364 -108199080 + MER5A DNA MER1_type 128 160 -29 354 237 54 11 chr9 34072427 34072520 -108198924 - L2 LINE L2 -2 3311 3215 358 295 0 27 chr9 34072586 34072698 -108198746 - L2 LINE L2 -280 3033 2925 307 224 0 0 chr9 34072700 34072758 -108198686 + MER5B DNA MER1_type 119 176 -2 1234 118 0 5 chr9 34073320 34073506 -108197938 + L1PB4 LINE L1 5963 6147 -9 1766 134 47 27 chr9 34074390 34074688 -108196756 - AluSx SINE Alu -8 304 1 643 311 39 11 chr9 34074849 34075132 -108196312 + L2 LINE L2 1751 2041 -1273 23340 40 4 3 chr9 34075309 34078993 -108192451 - L1PA4 LINE L1 0 6155 2468 11011 46 1 1 chr9 34078993 34080376 -108191068 + L1PA4 LINE L1 1110 2492 -3654 2511 243 51 20 chr9 34082679 34084042 -108187402 + L1ME2 LINE L1 4684 6089 -75 24 32 0 0 chr9 34084047 34084078 -108187366 + AT_rich Low_complexity Low_complexity 1 31 0 233 231 154 29 chr9 34084089 34084193 -108187251 + L1MC5 LINE L1 7799 7915 -46 2591 33 3 0 chr9 34085900 34086203 -108185241 - AluY SINE Alu -7 304 1 323 59 20 0 chr9 34086205 34086256 -108185188 - L1PB3 LINE L1 0 6154 6103 5697 104 23 47 chr9 34086924 34087780 -108183664 - L1PB3 LINE L1 0 6154 5317 2002 147 10 0 chr9 34087780 34088073 -108183371 - AluSx SINE Alu -16 296 1 5697 104 23 47 chr9 34088073 34088201 -108183243 - L1PB3 LINE L1 -837 5317 5187 8376 184 45 29 chr9 34088201 34090252 -108181192 + L1PB3 LINE L1 3102 5185 -961 25 0 0 0 chr9 34090428 34090453 -108180991 + AT_rich Low_complexity Low_complexity 1 25 0 363 251 57 80 chr9 34091343 34091518 -108179926 - HAL1 LINE L1 -597 1910 1740 1181 261 51 39 chr9 34091555 34091940 -108179504 + MLT1D LTR MaLR 127 505 0 996 229 46 23 chr9 34091941 34092247 -108179197 + MLT1D-int LTR MaLR 2 314 -1057 1181 203 54 0 chr9 34092455 34092716 -108178728 + MLT1D-int LTR MaLR 332 606 -765 666 258 41 5 chr9 34092851 34093045 -108178399 + MLT1D-int LTR MaLR 664 864 -507 447 186 10 21 chr9 34093188 34093285 -108178159 - L1MC5 LINE L1 -734 7227 7132 1991 144 0 0 chr9 34093318 34093603 -108177841 + AluSx SINE Alu 1 285 -27 605 255 91 12 chr9 34093613 34093856 -108177588 - LTR37B LTR ERV1 -8 460 199 1761 181 0 0 chr9 34093982 34094275 -108177169 - AluJb SINE Alu -19 293 1 520 290 100 24 chr9 34094909 34095251 -108176193 + LTR1 LTR ERV1 28 386 -440 391 195 110 17 chr9 34095408 34095526 -108175918 + LTR28 LTR ERV1 446 574 -446 292 211 58 153 chr9 34095538 34095728 -108175716 + LTR28 LTR ERV1 848 1019 -1 1106 282 272 10 chr9 34096149 34096653 -108174791 + L2 LINE L2 2001 2636 -678 442 228 73 16 chr9 34096665 34096788 -108174656 - LTR33 LTR ERVL -14 507 378 475 288 88 54 chr9 34096827 34097067 -108174377 - LTR33 LTR ERVL -237 284 37 769 296 112 41 chr9 34097069 34097732 -108173712 + L2 LINE L2 2619 3312 -1 249 83 0 0 chr9 34099065 34099101 -108172343 + (CA)n Simple_repeat Simple_repeat 1 36 0 2253 95 46 62 chr9 34100411 34100629 -108170815 - THE1B LTR MaLR -2 362 150 2125 124 0 0 chr9 34100629 34100941 -108170503 + AluSc SINE Alu 1 312 0 2253 95 46 62 chr9 34100941 34101089 -108170355 - THE1B LTR MaLR -214 150 1 2084 166 8 21 chr9 34101131 34101511 -108169933 + THE1C LTR MaLR 1 375 0 321 292 79 54 chr9 34101966 34102471 -108168973 - L1ME3A LINE L1 -218 5952 5428 29 28 0 0 chr9 34102528 34102564 -108168880 + AT_rich Low_complexity Low_complexity 1 36 0 389 356 60 20 chr9 34102632 34102882 -108168562 - HAL1 LINE L1 -833 1674 1415 649 281 33 53 chr9 34103095 34103114 -108168330 - HAL1 LINE L1 0 2507 2489 1524 124 4 26 chr9 34103114 34103347 -108168097 + AluJo SINE Alu 85 312 0 649 281 33 53 chr9 34103347 34103626 -108167818 - HAL1 LINE L1 -18 2489 2215 265 250 158 50 chr9 34103640 34103656 -108167788 + MLT1E1 LTR MaLR 1 14 -579 2029 160 30 28 chr9 34103656 34104018 -108167426 + THE1B LTR MaLR 1 363 -1 265 250 158 50 chr9 34104018 34104121 -108167323 + MLT1E1 LTR MaLR 14 133 -460 * 1153 235 28 7 chr9 34104117 34104524 -108166920 + MLT1E1 LTR MaLR 102 653 -1 1021 266 166 14 chr9 34104693 34105193 -108166251 - HAL1 LINE L1 -544 1963 1388 22 56 0 0 chr9 34105262 34105298 -108166146 + AT_rich Low_complexity Low_complexity 1 36 0 211 242 0 65 chr9 34106402 34106464 -108164980 - MIR3 SINE MIR -49 159 102 1048 228 22 14 chr9 34106465 34106882 -108164562 + MER31A LTR ERV1 1 476 -9 248 299 232 31 chr9 34107882 34108076 -108163368 - L3b LINE CR1 -146 1437 1205 1878 247 116 14 chr9 34108172 34108706 -108162738 + MLT1G LTR MaLR 22 571 -19 204 118 29 0 chr9 34108750 34108784 -108162660 + (CTTG)n Simple_repeat Simple_repeat 1 35 0 22 56 0 0 chr9 34109203 34109239 -108162205 + AT_rich Low_complexity Low_complexity 1 36 0 31 0 0 0 chr9 34109996 34110027 -108161417 + AT_rich Low_complexity Low_complexity 1 31 0 1595 169 35 17 chr9 34110382 34110672 -108160772 - AluJb SINE Alu -17 295 1 23 68 0 0 chr9 34110916 34110960 -108160484 + AT_rich Low_complexity Low_complexity 1 44 0 308 259 87 43 chr9 34111451 34111636 -108159808 + L1M4 LINE L1 5140 5332 -814 23 0 0 0 chr9 34111919 34111942 -108159502 + AT_rich Low_complexity Low_complexity 1 23 0 1506 22 38 0 chr9 34112044 34112227 -108159217 + L1PA2 LINE L1 5965 6154 -1 21 36 0 0 chr9 34112228 34112256 -108159188 + AT_rich Low_complexity Low_complexity 1 28 0 404 300 40 0 chr9 34112427 34112577 -108158867 + HAL1b LINE L1 756 911 -437 4557 67 40 2 chr9 34112805 34113433 -108158011 + L1PA10 LINE L1 5516 6167 -1 509 178 85 23 chr9 34113439 34113568 -108157876 + LTR48B LTR ERV1 426 562 -82 415 316 172 21 chr9 34113897 34114182 -108157262 - L2 LINE L2 -4 3309 2982 2294 157 46 2 chr9 34115543 34115958 -108155486 + Tigger3b DNA MER2_type 1 433 -798 893 264 94 41 chr9 34116701 34117064 -108154380 + MLT1J LTR MaLR 89 470 -41 2282 94 0 49 chr9 34118144 34118473 -108152971 - AluSq SINE Alu 0 313 1 249 303 26 13 chr9 34119700 34119776 -108151668 + L2 LINE L2 3163 3239 -33 4420 167 20 57 chr9 34119826 34121406 -108150038 - L1MA9 LINE L1 -1 6311 4793 518 251 21 5 chr9 34121427 34121618 -108149826 - L1MA9 LINE L1 -2953 3193 3000 1748 209 27 84 chr9 34122603 34123092 -108148352 + MLT2B1 LTR ERVL 1 461 -59 345 93 0 0 chr9 34123092 34123146 -108148298 + (GA)n Simple_repeat Simple_repeat 1 54 0 231 36 0 0 chr9 34123146 34123174 -108148270 + (TG)n Simple_repeat Simple_repeat 2 29 0 230 171 0 0 chr9 34123177 34123218 -108148226 + MLT2D LTR ERVL 374 414 0 740 155 0 0 chr9 34123826 34123942 -108147502 + FLAM_C SINE Alu 3 118 -15 31389 69 8 2 chr9 34123960 34129598 -108141846 + L1P2 LINE L1 1 5691 -463 241 242 174 30 chr9 34129610 34129742 -108141702 + L1ME LINE L1 5589 5739 -425 522 245 86 7 chr9 34130016 34130167 -108141277 + MIR SINE MIR 97 259 -3 511 299 72 6 chr9 34131161 34131328 -108140116 - MER5B DNA MER1_type 0 178 1 509 314 48 23 chr9 34131947 34132366 -108139078 + HAL1b LINE L1 285 589 -759 225 0 0 0 chr9 34132604 34132629 -108138815 + (TC)n Simple_repeat Simple_repeat 2 26 0 216 0 0 0 chr9 34132628 34132652 -108138792 + (TA)n Simple_repeat Simple_repeat 1 24 0 * 429 186 0 0 chr9 34132723 34132852 -108138592 + (TA)n Simple_repeat Simple_repeat 2 130 0 478 298 27 5 chr9 34133710 34133898 -108137546 + L1ME LINE L1 5627 5818 -303 1776 167 56 14 chr9 34134407 34134767 -108136677 - THE1C LTR MaLR 0 375 1 2677 154 29 3 chr9 34136201 34136725 -108134719 + L1MC/D LINE L1 5184 5722 -611 1036 275 175 10 chr9 34136725 34137143 -108134301 - MLT1H LTR MaLR -35 514 28 978 207 88 128 chr9 34137591 34138012 -108133432 + MLT1C LTR MaLR 95 460 -7 29 0 0 0 chr9 34138293 34138322 -108133122 + AT_rich Low_complexity Low_complexity 1 29 0 221 217 0 14 chr9 34138917 34138986 -108132458 + (CATATA)n Simple_repeat Simple_repeat 2 69 0 582 240 31 158 chr9 34139485 34139998 -108131446 + L1ME3 LINE L1 5491 5938 -224 899 120 0 125 chr9 34140224 34140408 -108131036 - MER1B DNA MER1_type 0 339 179 379 197 0 0 chr9 34140422 34140483 -108130961 - MER1B DNA MER1_type -276 61 1 21 0 0 0 chr9 34141686 34141707 -108129737 + AT_rich Low_complexity Low_complexity 1 21 0 230 344 120 37 chr9 34141934 34142335 -108129109 - L2 LINE L2 -26 3246 2813 385 193 50 107 chr9 34142605 34142745 -108128699 + MIR SINE MIR 118 249 -13 428 227 0 11 chr9 34143068 34143156 -108128288 + MER94 DNA DNA 1 87 -47 266 236 182 45 chr9 34143652 34143762 -108127682 - L2 LINE L2 -1 3312 3188 495 348 150 9 chr9 34144889 34145518 -108125926 - L2 LINE L2 0 3272 2550 2048 101 0 11 chr9 34146228 34146505 -108124939 + AluSx SINE Alu 32 305 -7 2324 248 94 27 chr9 34146953 34148279 -108123165 - L1ME3A LINE L1 -74 6165 4744 3188 55 0 0 chr9 34148327 34148729 -108122715 - L1PA5 LINE L1 -1222 4924 4523 7136 39 23 0 chr9 34148735 34149927 -108121517 + L1PA5 LINE L1 4939 6150 -4 504 271 65 19 chr9 34149940 34150095 -108121349 + FRAM SINE Alu 1 155 -21 440 310 80 0 chr9 34150104 34150304 -108121140 + L1M4 LINE L1 4027 4242 -1904 586 160 134 8 chr9 34150326 34150445 -108120999 + AluJo SINE Alu 1 134 -178 1097 270 60 64 chr9 34150466 34151476 -108119968 - L1MEc LINE L1 -3212 3003 2023 1780 137 10 10 chr9 34151543 34151849 -108119595 - AluY SINE Alu -4 307 2 1638 137 65 42 chr9 34151977 34152283 -108119161 - THE1B LTR MaLR -51 313 1 247 383 19 32 chr9 34153026 34153180 -108118264 - MIR3 SINE MIR -24 184 33 6122 170 49 27 chr9 34153691 34155349 -108116095 + L1P3 LINE L1 2 1721 -4734 24083 32 5 0 chr9 34155455 34159186 -108112258 + L1PA3 LINE L1 2435 6152 -3 1075 67 176 6 chr9 34159219 34159283 -108112161 + LTR13 LTR ERVK 622 674 -333 213 39 0 0 chr9 34159283 34159309 -108112135 + (TC)n Simple_repeat Simple_repeat 1 26 0 1075 67 176 6 chr9 34159309 34159409 -108112035 + LTR13 LTR ERVK 674 814 -193 1488 81 9 5 chr9 34159542 34159753 -108111691 + LTR13 LTR ERVK 796 1007 0 4686 193 13 3 chr9 34159753 34160198 -108111246 - L1P4 LINE L1 -350 5816 5377 2057 99 46 30 chr9 34160198 34160502 -108110942 - AluSq SINE Alu -4 309 1 4686 193 13 3 chr9 34160502 34161551 -108109893 - L1P4 LINE L1 -789 5377 4307 1565 205 8 31 chr9 34161550 34161906 -108109538 + L1P4 LINE L1 3955 4302 -1844 * 542 294 147 35 chr9 34162418 34162786 -108108658 + MLT1I LTR MaLR 1 409 0 3992 125 24 0 chr9 34163927 34164545 -108106899 - MER41B LTR ERV1 0 635 3 788 223 0 0 chr9 34165310 34165458 -108105986 - MER58A DNA MER1_type -34 190 43 358 282 17 34 chr9 34165831 34165948 -108105496 + MIR SINE MIR 117 231 -31 466 306 69 26 chr9 34165956 34166188 -108105256 - MIR SINE MIR -2 260 19 2038 122 3 7 chr9 34166538 34166825 -108104619 - AluSx SINE Alu -26 286 1 189 293 71 91 chr9 34168301 34168400 -108103044 + MIR SINE MIR 39 135 -73 2651 86 103 2 chr9 34168430 34168837 -108102607 - LTR7 LTR ERV1 -2 448 1 2348 108 45 13 chr9 34168837 34169217 -108102227 - HERVH LTR ERV1 0 7713 7322 1327 154 0 5 chr9 34169215 34169436 -108102008 - HERVH LTR ERV1 -1894 5819 5600 * 4441 135 1 0 chr9 34169437 34170098 -108101346 - HERVH LTR ERV1 -2564 5149 4488 2602 108 17 5 chr9 34170100 34170507 -108100937 - HERVH LTR ERV1 -3720 3993 3582 15607 152 8 18 chr9 34170616 34173470 -108097974 + L1P LINE L1 1725 4549 -1597 2658 10 0 7 chr9 34173568 34173864 -108097580 - AluYa5 SINE Alu 0 311 18 444 204 66 51 chr9 34174057 34174194 -108097250 + MER104 DNA Tc2 16 154 -26 193 343 14 14 chr9 34176908 34176978 -108094466 - L2 LINE L2 -6 3307 3238 539 231 85 36 chr9 34177188 34177435 -108094009 + MLT1J LTR MaLR 208 466 -45 5098 159 21 15 chr9 34177653 34179459 -108091985 + L1MA7 LINE L1 4478 6287 -4 929 291 65 54 chr9 34179633 34180062 -108091382 - L2 LINE L2 -18 3295 2862 2144 98 63 0 chr9 34181728 34182075 -108089369 - HERVH LTR ERV1 -4205 3508 3140 * 14534 95 29 23 chr9 34182069 34184410 -108087034 - HERVH LTR ERV1 -4726 2987 633 428 254 18 0 chr9 34184898 34185008 -108086436 - MER63 DNA MER1_type -273 788 677 640 331 54 15 chr9 34185122 34185454 -108085990 - HERV16 LTR ERVL -2776 2220 1876 291 218 58 11 chr9 34185582 34185669 -108085775 - LTR16A LTR ERVL -86 364 274 4461 164 28 32 chr9 34186306 34187212 -108084232 - MER49 LTR ERV1 -21 902 1 206 381 44 60 chr9 34189217 34189582 -108081862 + L2 LINE L2 920 1278 -2036 415 361 112 33 chr9 34189701 34190094 -108081350 + L2 LINE L2 2542 2965 -349 480 288 62 87 chr9 34190865 34191065 -108080379 + L2 LINE L2 2552 2743 -571 204 97 0 0 chr9 34191065 34191096 -108080348 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 480 288 62 87 chr9 34191096 34191204 -108080240 + L2 LINE L2 2743 2852 -462 2168 125 33 31 chr9 34191346 34191706 -108079738 - THE1B LTR MaLR -3 361 1 382 344 48 4 chr9 34191762 34192068 -108079376 - L1MEd LINE L1 -934 1556 1148 335 191 22 49 chr9 34192230 34192413 -108079031 + (TA)n Simple_repeat Simple_repeat 2 179 0 238 180 80 10 chr9 34192381 34192481 -108078963 + (CATAT)n Simple_repeat Simple_repeat 4 110 0 * 478 281 61 54 chr9 34193620 34193898 -108077546 - L2 LINE L2 -686 2628 2349 222 118 0 0 chr9 34194888 34194922 -108076522 + (A)n Simple_repeat Simple_repeat 1 34 0 27 0 0 0 chr9 34195475 34195502 -108075942 + AT_rich Low_complexity Low_complexity 1 27 0 269 375 35 28 chr9 34195507 34195651 -108075793 + L2 LINE L2 2652 2796 -518 230 282 39 26 chr9 34195650 34195728 -108075716 - L2 LINE L2 -5 3308 3230 * 234 204 19 0 chr9 34196713 34196767 -108074677 + (CATAT)n Simple_repeat Simple_repeat 4 58 0 350 215 10 149 chr9 34197753 34197948 -108073496 - L2 LINE L2 -141 3172 3005 187 324 54 0 chr9 34198569 34198643 -108072801 + MIR SINE MIR 66 143 -65 59 15 0 0 chr9 34200771 34200837 -108070607 + AT_rich Low_complexity Low_complexity 1 66 0 1859 157 62 37 chr9 34200973 34201514 -108069930 + MLT2A2 LTR ERVL 1 554 0 2747 206 23 37 chr9 34201534 34201638 -108069806 + LTR9B LTR ERV1 7 111 -533 252 0 0 0 chr9 34201638 34201666 -108069778 + (TTA)n Simple_repeat Simple_repeat 3 30 0 4525 58 7 0 chr9 34201666 34202234 -108069210 - L1PA6 LINE L1 -18 6136 5565 2747 206 23 37 chr9 34202234 34202775 -108068669 + LTR9B LTR ERV1 109 644 0 9553 93 15 4 chr9 34202775 34204146 -108067298 + HERVL LTR ERVL 11 1397 -4257 603 96 11 0 chr9 34204146 34204240 -108067204 + MLT2A2 LTR ERVL 359 453 0 2187 134 14 6 chr9 34204979 34205330 -108066114 - L1PA16 LINE L1 -3 6163 5810 4990 51 5 8 chr9 34205330 34205977 -108065467 + LTR13 LTR ERVK 3 647 -360 16700 64 55 4 chr9 34205982 34208360 -108063084 + L1P LINE L1 1 2501 -3645 18536 134 33 49 chr9 34308487 34311930 -107959514 - L1P LINE L1 -2757 3389 1 2328 74 3 17 chr9 34312634 34312931 -107958513 + AluY SINE Alu 1 293 -18 270 311 137 28 chr9 34313641 34314199 -107957245 - L2 LINE L2 -109 3163 2545 766 215 113 20 chr9 34314553 34314748 -107956696 - MER58C DNA MER1_type 0 215 3 2410 90 0 0 chr9 34314859 34315159 -107956285 - AluSg SINE Alu -10 300 1 181 267 111 11 chr9 34315559 34315649 -107955795 + MIR SINE MIR 116 214 -48 924 267 8 19 chr9 34315757 34316015 -107955429 + MIR SINE MIR 5 259 -3 353 233 22 0 chr9 34317336 34317426 -107954018 + L2 LINE L2 3221 3312 -1 248 294 0 0 chr9 34318169 34318237 -107953207 - L1MC4 LINE L1 -61 7981 7914 1573 120 5 5 chr9 34318684 34318901 -107952543 - AluSx SINE Alu -95 217 1 184 323 114 19 chr9 34319239 34319397 -107952047 + L2 LINE L2 3132 3304 -9 341 344 109 5 chr9 34321029 34321250 -107950194 + MIR SINE MIR 8 251 -11 7306 70 157 4 chr9 34321533 34322593 -107948851 + MER11B LTR ERVK 1 1222 -14 2240 123 0 0 chr9 34323994 34324302 -107947142 + AluSx SINE Alu 1 308 -4 830 268 213 17 chr9 34325235 34325657 -107945787 + L2 LINE L2 2809 3313 0 257 283 53 18 chr9 34325653 34325766 -107945678 - MIR3 SINE MIR -8 200 84 * 1636 183 0 0 chr9 34327409 34327683 -107943761 - AluJo SINE Alu -30 282 9 252 264 23 23 chr9 34328089 34328176 -107943268 + L1P LINE L1 5339 5425 -729 1312 158 67 16 chr9 34329169 34329422 -107942022 - L1MD3 LINE L1 -20 7975 7710 185 358 74 0 chr9 34329920 34330015 -107941429 + MIR3 SINE MIR 7 108 -100 310 323 159 20 chr9 34330017 34330218 -107941226 - MIR SINE MIR 0 262 34 554 134 19 14 chr9 34330275 34330482 -107940962 + AluSx SINE Alu 3 303 -6 2110 126 6 9 chr9 34330607 34331043 -107940401 - L1P4 LINE L1 -582 5579 5144 1485 198 42 66 chr9 34331046 34331424 -107940020 - L1M4 LINE L1 -6157 385 17 189 294 0 0 chr9 34332278 34332329 -107939115 + L2 LINE L2 3017 3067 -205 1054 213 19 5 chr9 34332420 34332631 -107938813 + MER20 DNA MER1_type 2 215 -4 2667 110 62 24 chr9 34335256 34335633 -107935811 - Tigger3(Golem) DNA MER2_type -301 2727 2327 1906 143 7 29 chr9 34335633 34335940 -107935504 + AluJo SINE Alu 1 300 -12 2667 110 62 24 chr9 34335940 34336027 -107935417 - Tigger3(Golem) DNA MER2_type -701 2327 2245 21 36 0 0 chr9 34336140 34336168 -107935276 + AT_rich Low_complexity Low_complexity 1 28 0 334 256 250 51 chr9 34336526 34336682 -107934762 + MER5A DNA MER1_type 3 189 0 757 252 65 55 chr9 34336786 34337096 -107934348 - MER102b DNA MER1_type -2 339 27 520 292 23 14 chr9 34338154 34338374 -107933070 - MIR SINE MIR -32 230 5 216 200 0 0 chr9 34339262 34339307 -107932137 + A-rich Low_complexity Low_complexity 4 48 0 888 204 82 15 chr9 34339995 34340191 -107931253 + MER63A DNA MER1_type 2 210 0 244 219 78 16 chr9 34340215 34340279 -107931165 - MIR3 SINE MIR -51 157 90 327 309 32 40 chr9 34340581 34340707 -107930737 + L2 LINE L2 3188 3312 -1 2307 161 105 8 chr9 34341638 34342115 -107929329 + Charlie1b DNA MER1_type 1 523 0 21 0 0 0 chr9 34342864 34342885 -107928559 + GC_rich Low_complexity Low_complexity 1 21 0 933 134 70 6 chr9 34344754 34344925 -107926519 - THE1C LTR MaLR 0 375 194 233 161 161 0 chr9 34345277 34345333 -107926111 - THE1C LTR MaLR -319 109 45 3827 134 28 46 chr9 34347250 34347597 -107923847 + LTR26 LTR ERV1 1 334 -269 2279 64 58 3 chr9 34347597 34347892 -107923552 - AluY SINE Alu 0 311 1 3827 134 28 46 chr9 34347892 34348156 -107923288 + LTR26 LTR ERV1 334 601 -2 5065 58 6 2 chr9 34348260 34348901 -107922543 + L1P3 LINE L1 3460 4103 -2043 4234 41 6 8 chr9 34348898 34349411 -107922033 + L1P3 LINE L1 5309 5820 -334 * 1662 224 67 9 chr9 34350079 34350669 -107920775 - MER82 DNA MER2_type 0 653 2 1168 184 265 84 chr9 34351748 34352233 -107919211 - MLT1E LTR MaLR 0 593 2 1702 182 0 10 chr9 34352253 34352549 -107918895 - AluJo SINE Alu -19 293 1 212 274 143 12 chr9 34354209 34354293 -107917151 - MER5A DNA MER1_type 0 189 95 430 250 92 37 chr9 34355142 34355306 -107916138 + MIR SINE MIR 59 231 -31 849 254 56 20 chr9 34355407 34355659 -107915785 - MIR SINE MIR 0 262 2 2448 223 211 53 chr9 34355809 34357270 -107914174 + HAL1 LINE L1 678 2370 -137 2271 124 0 3 chr9 34358273 34358580 -107912864 + AluSx SINE Alu 1 306 -6 594 187 8 67 chr9 34360386 34360520 -107910924 - MER5B DNA MER1_type -52 126 1 294 298 12 12 chr9 34360575 34360659 -107910785 - MER5A DNA MER1_type -70 119 36 21 0 0 0 chr9 34360726 34360747 -107910697 + AT_rich Low_complexity Low_complexity 1 21 0 220 342 33 0 chr9 34361125 34361245 -107910199 + MIR SINE MIR 138 261 -1 1190 184 27 12 chr9 34362164 34362420 -107909024 - AluSq SINE Alu -24 289 30 1646 191 0 4 chr9 34362423 34362696 -107908748 - AluJb SINE Alu -40 272 1 573 257 116 69 chr9 34362699 34362783 -107908661 - L1MEc LINE L1 -4757 1639 1560 1512 170 20 37 chr9 34362783 34363077 -107908367 + AluJb SINE Alu 1 289 -23 573 257 116 69 chr9 34363077 34363483 -107907961 - L1MEc LINE L1 -4836 1560 1126 1184 214 40 11 chr9 34363487 34363762 -107907682 + LTR40c LTR ERVL 183 465 0 252 295 135 13 chr9 34363829 34363985 -107907459 + HERVL40 LTR ERVL 104 278 -5252 662 267 65 19 chr9 34364046 34364404 -107907040 + HERVL40 LTR ERVL 958 1394 -4136 824 138 27 138 chr9 34364584 34364655 -107906789 + MER20 DNA MER1_type 1 78 -141 2181 98 0 53 chr9 34364655 34364973 -107906471 - AluSq SINE Alu -12 301 1 824 138 27 138 chr9 34364973 34365126 -107906318 + MER20 DNA MER1_type 78 200 -19 4068 266 62 46 chr9 34365489 34366755 -107904689 + HERVL40 LTR ERVL 2663 3948 -1582 1761 238 29 13 chr9 34366977 34367360 -107904084 + HERVL40 LTR ERVL 5140 5528 -2 604 197 24 16 chr9 34367369 34367496 -107903948 + LTR40c LTR ERVL 8 135 -330 301 200 7 89 chr9 34367499 34367634 -107903810 + L1MC5 LINE L1 7744 7867 -94 1297 194 58 20 chr9 34367654 34367948 -107903496 + LTR40c LTR ERVL 161 465 0 31 0 0 0 chr9 34368106 34368137 -107903307 + AT_rich Low_complexity Low_complexity 1 31 0 301 236 128 68 chr9 34368194 34368342 -107903102 - L1MC5 LINE L1 -75 7886 7730 2503 167 19 14 chr9 34369088 34369514 -107901930 - MSTA LTR MaLR 0 428 1 509 241 13 102 chr9 34369540 34369776 -107901668 - MER58C DNA MER1_type 0 215 1 850 285 4 48 chr9 34369779 34370049 -107901395 + MIR SINE MIR 5 262 0 320 0 25 0 chr9 34370208 34370248 -107901196 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 832 194 50 6 chr9 34370378 34370558 -107900886 - AluSx SINE Alu -121 191 4 318 275 60 39 chr9 34370594 34370776 -107900668 - L1MC4a LINE L1 -1544 6264 6079 436 229 84 0 chr9 34370844 34370975 -107900469 - L1MC4a LINE L1 -1837 5971 5830 462 191 161 9 chr9 34370990 34371162 -107900282 - L1MC4a LINE L1 -403 5775 5568 2841 90 5 3 chr9 34371238 34371606 -107899838 - L1PB1 LINE L1 -1 6150 5782 203 167 0 0 chr9 34371606 34371648 -107899796 + (TATATG)n Simple_repeat Simple_repeat 5 46 0 3743 145 11 16 chr9 34371648 34371776 -107899668 - L1PB1 LINE L1 -360 5791 5664 2158 113 0 20 chr9 34371776 34372076 -107899368 - AluSq SINE Alu -15 298 5 3743 145 11 16 chr9 34372076 34372608 -107898836 - L1PB1 LINE L1 -487 5664 5139 2151 121 0 10 chr9 34372608 34372913 -107898531 - AluSx SINE Alu -10 302 1 3743 145 11 16 chr9 34372913 34373244 -107898200 - L1PB1 LINE L1 -1012 5139 4808 845 246 159 30 chr9 34373263 34373666 -107897778 - LTR50 LTR ERVL -332 463 9 4635 136 51 3 chr9 34373707 34374448 -107896996 - L1MA8 LINE L1 -4 6287 5511 344 303 10 0 chr9 34374454 34374553 -107896891 - L1MC4a LINE L1 -2247 5561 5462 328 291 223 0 chr9 34374938 34375086 -107896358 - MER5A DNA MER1_type 0 189 9 891 237 22 72 chr9 34376331 34376609 -107894835 - MLT1B LTR MaLR -4 386 123 608 163 0 116 chr9 34376607 34376754 -107894690 - MLT2B2 LTR ERVL -132 383 254 * 188 388 12 0 chr9 34376818 34376898 -107894546 + MIR SINE MIR 40 120 -142 22 35 0 0 chr9 34376913 34376942 -107894502 + AT_rich Low_complexity Low_complexity 1 29 0 2198 104 3 3 chr9 34376951 34377248 -107894196 + AluSq SINE Alu 1 297 -16 1573 164 98 33 chr9 34377416 34377751 -107893693 + MLT1A1 LTR MaLR 3 359 -6 1333 134 193 8 chr9 34377851 34377955 -107893489 + AluJo SINE Alu 2 86 -216 218 54 0 27 chr9 34377955 34377992 -107893452 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 1333 134 193 8 chr9 34377992 34378126 -107893318 + AluJo SINE Alu 86 284 -18 284 304 65 22 chr9 34378471 34378609 -107892835 - MLT1K LTR MaLR 0 588 445 229 217 183 0 chr9 34379279 34379339 -107892105 + MER103 DNA DNA 1 71 -95 217 207 216 27 chr9 34379660 34379771 -107891673 - MER5B DNA MER1_type -29 149 18 2146 113 7 3 chr9 34380051 34380343 -107891101 + AluSx SINE Alu 1 293 -19 1485 135 28 28 chr9 34380422 34380704 -107890740 - THE1C LTR MaLR 0 375 94 218 204 0 0 chr9 34380752 34380801 -107890643 + T-rich Low_complexity Low_complexity 1 49 0 269 284 177 0 chr9 34380920 34381061 -107890383 - MIR SINE MIR -2 260 95 199 211 14 14 chr9 34381630 34381701 -107889743 + (TA)n Simple_repeat Simple_repeat 2 72 0 531 253 150 16 chr9 34381711 34381964 -107889480 - L2 LINE L2 -1218 2096 1810 22 0 0 0 chr9 34382168 34382190 -107889254 + AT_rich Low_complexity Low_complexity 1 22 0 1140 176 47 4 chr9 34383583 34383838 -107887606 - L1MD3 LINE L1 0 7995 7730 2102 111 7 7 chr9 34383844 34384142 -107887302 - AluSg SINE Alu -12 298 1 2644 84 3 6 chr9 34384897 34385253 -107886191 + THE1A LTR MaLR 1 355 0 2650 177 71 46 chr9 34385402 34386323 -107885121 + L1MDb LINE L1 961 1935 -4471 474 275 180 0 chr9 34386428 34386606 -107884838 + MIR SINE MIR 34 243 -19 690 165 16 0 chr9 34387510 34387631 -107883813 + AluJo SINE Alu 64 186 -126 355 118 191 0 chr9 34387632 34387700 -107883744 + AluS SINE Alu 220 300 -2 2387 45 42 0 chr9 34388959 34389247 -107882197 - AluY SINE Alu -11 300 1 654 313 40 4 chr9 34390040 34390267 -107881177 - MIR SINE MIR 0 262 28 876 98 32 0 chr9 34391164 34391287 -107880157 + AluJo SINE Alu 183 309 -3 211 319 161 46 chr9 34391652 34391975 -107879469 - L2 LINE L2 -353 2961 2602 347 305 107 0 chr9 34392557 34392688 -107878756 - MIR SINE MIR 0 262 118 290 266 51 25 chr9 34392703 34392782 -107878662 + MIR SINE MIR 27 107 -155 1813 198 0 0 chr9 34392952 34393245 -107878199 + AluJb SINE Alu 2 294 -18 191 329 134 0 chr9 34393248 34393330 -107878114 - MIR SINE MIR -71 137 45 267 232 0 29 chr9 34393449 34393518 -107877926 + MLT1J1 LTR MaLR 15 81 -365 289 257 97 70 chr9 34393527 34393761 -107877683 + MLT1J2 LTR MaLR 120 371 -79 * 315 205 107 8 chr9 34393758 34393880 -107877564 + MLT1J2 LTR MaLR 317 450 0 286 148 0 115 chr9 34394797 34394858 -107876586 - MIR SINE MIR 0 262 209 1170 205 89 17 chr9 34394858 34395151 -107876293 - MER58B DNA MER1_type 0 341 28 434 202 0 22 chr9 34395153 34395242 -107876202 - MIR SINE MIR -81 181 95 1970 157 23 0 chr9 34395544 34395843 -107875601 + AluSx SINE Alu 1 306 -6 258 218 18 0 chr9 34396210 34396265 -107875179 + L2 LINE L2 3217 3272 0 442 256 94 77 chr9 34396961 34397034 -107874410 + MLT2C1 LTR ERVL 1 71 -326 687 192 40 7 chr9 34397034 34397185 -107874259 + MLT1E1 LTR MaLR 149 304 -350 442 256 94 77 chr9 34397185 34397312 -107874132 + MLT2C1 LTR ERVL 71 357 -40 22 70 0 0 chr9 34397419 34397462 -107873982 + AT_rich Low_complexity Low_complexity 1 43 0 216 97 0 0 chr9 34397462 34397493 -107873951 + (CA)n Simple_repeat Simple_repeat 2 32 0 2223 114 3 0 chr9 34397854 34398152 -107873292 - AluSg SINE Alu -11 299 1 1498 210 30 49 chr9 34398342 34398701 -107872743 - L1M4 LINE L1 -1200 4946 4597 2084 137 3 0 chr9 34398701 34398994 -107872450 + AluSx SINE Alu 1 294 -18 1498 210 30 49 chr9 34398994 34399101 -107872343 - L1M4 LINE L1 -1549 4597 4489 1349 202 165 40 chr9 34399102 34399604 -107871840 - MLT1F1 LTR MaLR -1 566 6 405 189 63 0 chr9 34399607 34399718 -107871726 - L1M4 LINE L1 -1650 4496 4379 1113 169 0 6 chr9 34399728 34399900 -107871544 - AluJb SINE Alu -8 304 134 2039 143 0 7 chr9 34399900 34400207 -107871237 - AluSx SINE Alu -7 305 1 253 102 20 20 chr9 34400222 34400271 -107871173 - MLT2E LTR ERVL -2 626 578 270 0 0 0 chr9 34400534 34400564 -107870880 + (TG)n Simple_repeat Simple_repeat 2 31 0 2067 116 0 0 chr9 34400566 34400843 -107870601 - AluSx SINE Alu -35 277 1 1758 181 32 83 chr9 34401566 34402058 -107869386 + MLT1C LTR MaLR 1 467 0 2444 202 34 3 chr9 34402058 34402641 -107868803 + L1MB7 LINE L1 5463 6063 -121 579 141 66 8 chr9 34403105 34403226 -107868218 - LOR1b-int LTR ERV1 -3800 4320 4193 2251 87 20 0 chr9 34403227 34403526 -107867918 - AluSx SINE Alu -7 305 1 10571 107 23 22 chr9 34403585 34405379 -107866065 - LOR1b-int LTR ERV1 -3928 4192 2397 1352 133 0 0 chr9 34405379 34405560 -107865884 + AluSx SINE Alu 1 181 -131 6173 106 71 29 chr9 34405565 34407631 -107863813 - LOR1b-int LTR ERV1 -5731 2389 201 1609 168 59 3 chr9 34407641 34407963 -107863481 - LOR1b-int LTR ERV1 -7749 371 32 2129 156 49 0 chr9 34407968 34408359 -107863085 - LOR1b LTR ERV1 0 461 52 247 294 151 84 chr9 34408408 34408779 -107862665 - L2 LINE L2 -1142 2172 1777 695 110 10 0 chr9 34409054 34409154 -107862290 - AluSg SINE Alu -13 296 196 870 105 0 0 chr9 34409155 34409269 -107862175 - AluSg SINE Alu -196 114 1 23 0 0 0 chr9 34409599 34409622 -107861822 + AT_rich Low_complexity Low_complexity 1 23 0 30402 103 13 56 chr9 34409652 34416083 -107855361 - L1PA7 LINE L1 0 6154 12 24 0 0 0 chr9 34416129 34416153 -107855291 + AT_rich Low_complexity Low_complexity 1 24 0 784 263 0 11 chr9 34416558 34416748 -107854696 + AluJo SINE Alu 118 305 -7 365 231 98 10 chr9 34417145 34417269 -107854175 + MIR SINE MIR 50 188 -63 240 111 0 0 chr9 34418124 34418169 -107853275 + (ATTG)n Simple_repeat Simple_repeat 4 48 0 2152 107 0 4 chr9 34418169 34418450 -107852994 - AluSx SINE Alu -32 280 1 331 305 59 27 chr9 34418798 34418985 -107852459 + L1M4 LINE L1 4415 4607 -1539 33 25 0 0 chr9 34419293 34419333 -107852111 + AT_rich Low_complexity Low_complexity 1 40 0 452 102 72 6 chr9 34419333 34419499 -107851945 + (TA)n Simple_repeat Simple_repeat 1 177 0 26 0 0 0 chr9 34419505 34419531 -107851913 + AT_rich Low_complexity Low_complexity 1 26 0 390 159 80 6 chr9 34419535 34419698 -107851746 + (TA)n Simple_repeat Simple_repeat 1 175 0 818 249 10 61 chr9 34419704 34420001 -107851443 - AluSp SINE Alu -19 284 3 2880 128 2 4 chr9 34420121 34420573 -107850871 + Tigger1 DNA MER2_type 1963 2413 -5 398 206 10 41 chr9 34420578 34420675 -107850769 - MER63 DNA MER1_type -342 720 1 2137 111 4 0 chr9 34421200 34421479 -107849965 + AluSx SINE Alu 5 284 -28 2976 207 72 30 chr9 34421486 34421891 -107849553 + L1ME1 LINE L1 4323 4709 -1457 2579 93 25 0 chr9 34421891 34422246 -107849198 + THE1B LTR MaLR 1 364 0 2976 207 72 30 chr9 34422246 34423496 -107847948 + L1ME1 LINE L1 4709 6043 -123 408 222 18 78 chr9 34423467 34423551 -107847893 + L1MA10 LINE L1 6175 6246 -88 * 2121 129 10 0 chr9 34423551 34423845 -107847599 - AluSx SINE Alu -15 297 1 408 222 18 78 chr9 34423845 34423927 -107847517 + L1MA10 LINE L1 6246 6331 -3 15041 57 8 7 chr9 34424031 34425999 -107845445 + HERVL-A1 LTR ERVL 3684 5654 0 2566 102 34 8 chr9 34425999 34426403 -107845041 + MLT2A1 LTR ERVL 1 479 -36 272 36 121 0 chr9 34426403 34426486 -107844958 + (TA)n Simple_repeat Simple_repeat 1 93 0 2575 188 52 5 chr9 34426489 34427049 -107844395 - L1MCa LINE L1 -5817 609 24 633 240 66 0 chr9 34427082 34427278 -107844166 + LTR50 LTR ERVL 14 222 -573 301 292 146 0 chr9 34427474 34427604 -107843840 - MIR SINE MIR -12 250 102 204 277 0 0 chr9 34429162 34429209 -107842235 + MIR SINE MIR 168 214 -48 229 259 0 0 chr9 34431005 34431059 -107840385 + (TG)n Simple_repeat Simple_repeat 1 54 0 565 163 0 0 chr9 34431245 34431343 -107840101 - AluSp/q SINE Alu -10 303 206 348 243 28 28 chr9 34432515 34432622 -107838822 + MIR SINE MIR 94 200 -62 2191 98 0 14 chr9 34432699 34432994 -107838450 + AluY SINE Alu 1 291 -20 528 359 67 22 chr9 34435038 34435353 -107836091 - L2 LINE L2 -15 3257 2929 210 37 0 0 chr9 34436157 34436184 -107835260 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2050 100 0 0 chr9 34436188 34436448 -107834996 - AluSc SINE Alu -21 288 29 315 228 109 20 chr9 34436660 34436761 -107834683 - L2 LINE L2 -1 3271 3162 227 31 31 0 chr9 34436779 34436811 -107834633 + (TGG)n Simple_repeat Simple_repeat 1 33 0 246 156 47 0 chr9 34437447 34437511 -107833933 + (TA)n Simple_repeat Simple_repeat 2 68 0 258 286 61 0 chr9 34438778 34438876 -107832568 - MLT1G1 LTR MaLR 0 595 492 1644 197 56 0 chr9 34438912 34439287 -107832157 - L1ME2 LINE L1 -200 5964 5569 1310 196 25 0 chr9 34439295 34439580 -107831864 - L1ME1 LINE L1 -223 6441 6150 1115 151 120 224 chr9 34439698 34440306 -107831138 - MLT2B3 LTR ERVL -7 547 3 386 164 19 39 chr9 34440346 34440450 -107830994 - L1ME1 LINE L1 -1155 5489 5388 2973 209 50 71 chr9 34440460 34441023 -107830421 - L1ME1 LINE L1 -5601 941 405 6021 121 16 0 chr9 34441023 34442034 -107829410 - L1PA14 LINE L1 -1 6160 5144 2973 209 50 71 chr9 34442034 34442415 -107829029 - L1ME1 LINE L1 -6137 405 17 187 341 59 0 chr9 34443178 34443263 -107828181 + L3 LINE CR1 1308 1397 -180 186 294 0 0 chr9 34443271 34443322 -107828122 + L2 LINE L2 3017 3067 -205 1005 209 19 0 chr9 34443413 34443623 -107827821 + MER20 DNA MER1_type 2 215 -4 346 239 147 112 chr9 34444545 34444742 -107826702 - MIR SINE MIR -13 249 46 625 310 78 0 chr9 34446464 34446706 -107824738 + MIR SINE MIR 2 262 0 239 136 0 61 chr9 34447043 34447109 -107824335 - L1MC4 LINE L1 -1345 6697 6636 393 264 21 7 chr9 34447157 34447297 -107824147 + (TA)n Simple_repeat Simple_repeat 1 142 0 264 111 0 0 chr9 34447300 34447345 -107824099 + (TG)n Simple_repeat Simple_repeat 1 45 0 274 240 112 56 chr9 34447967 34448146 -107823298 - LTR67 LTR ERVL -9 548 360 250 273 0 0 chr9 34448208 34448263 -107823181 - MER63 DNA MER1_type 0 1061 1007 24 0 0 0 chr9 34448270 34448294 -107823150 + AT_rich Low_complexity Low_complexity 1 24 0 5410 159 16 7 chr9 34448302 34450279 -107821165 - L1MA4 LINE L1 -7 6475 4484 3394 183 16 5 chr9 34450275 34450916 -107820528 - L1MA4 LINE L1 -4676 652 5 * 13573 134 58 6 chr9 34450988 34453279 -107818165 + Tigger1 DNA MER2_type 2 2413 -5 398 206 10 41 chr9 34453284 34453381 -107818063 - MER63 DNA MER1_type -342 720 1 2254 93 4 0 chr9 34453906 34454224 -107817220 + AluSp SINE Alu 5 323 0 343 201 280 37 chr9 34454816 34455084 -107816360 - L1ME4a LINE L1 -7 6114 5782 413 63 38 13 chr9 34455099 34455178 -107816266 + (TCTA)n Simple_repeat Simple_repeat 1 81 0 382 277 107 0 chr9 34455202 34455314 -107816130 + FLAM_A SINE Alu 2 125 -8 236 222 0 69 chr9 34455325 34455397 -107816047 - L1ME4a LINE L1 -433 5688 5622 536 314 90 22 chr9 34455464 34455687 -107815757 + MIR SINE MIR 3 240 -22 234 283 132 0 chr9 34456022 34456128 -107815316 + LTR16A1 LTR ERVL 338 457 0 867 196 27 38 chr9 34456979 34457163 -107814281 + MER5A DNA MER1_type 7 188 -1 248 291 81 108 chr9 34457193 34457416 -107814028 + L2 LINE L2 2956 3172 -100 2791 93 17 14 chr9 34457664 34458085 -107813359 - L1MA3 LINE L1 0 6305 5884 187 333 0 0 chr9 34458704 34458764 -107812680 + L2 LINE L2 3244 3303 -10 21 0 0 0 chr9 34461776 34461797 -107809647 + AT_rich Low_complexity Low_complexity 1 21 0 1908 226 75 33 chr9 34462141 34462447 -107808997 + MER90 LTR ERV1 1 341 -234 2209 136 42 20 chr9 34462447 34462801 -107808643 + THE1B LTR MaLR 1 362 -2 1908 226 75 33 chr9 34462801 34463037 -107808407 + MER90 LTR ERV1 341 566 -9 225 314 14 0 chr9 34463562 34463632 -107807812 + CT-rich Low_complexity Low_complexity 2 72 0 7641 133 14 13 chr9 34463699 34463851 -107807593 - L1MA2 LINE L1 -6 7717 7567 2086 4 0 0 chr9 34463851 34464076 -107807368 - AluYa5 SINE Alu -2 309 85 7641 133 14 13 chr9 34464076 34466285 -107805159 - L1MA2 LINE L1 -156 7567 5350 2236 107 7 0 chr9 34466285 34466584 -107804860 - AluY SINE Alu -10 301 1 7641 133 14 13 chr9 34466584 34466706 -107804738 - L1MA2 LINE L1 -2373 5350 5230 483 117 0 0 chr9 34466709 34466786 -107804658 - Alu SINE Alu 0 311 235 10945 119 56 3 chr9 34466786 34468558 -107802886 - L1MA2 LINE L1 -4594 2971 1105 314 205 116 27 chr9 34468554 34468666 -107802778 - L1MA2 LINE L1 -7430 135 14 * 37 52 0 0 chr9 34468809 34468867 -107802577 + AT_rich Low_complexity Low_complexity 1 58 0 1136 133 7 5 chr9 34468985 34469206 -107802238 - L1ME LINE L1 -653 5509 5290 22 0 0 0 chr9 34469261 34469283 -107802161 + AT_rich Low_complexity Low_complexity 1 22 0 1424 123 33 12 chr9 34469402 34469646 -107801798 - L1PB2 LINE L1 -8 6143 5895 225 245 128 11 chr9 34469774 34469868 -107801576 - MIR SINE MIR -67 195 91 3277 178 19 32 chr9 34469980 34470373 -107801071 + L1 LINE L1 3995 4374 -1772 225 0 0 0 chr9 34470373 34470398 -107801046 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 3277 178 19 32 chr9 34470398 34470796 -107800648 + L1 LINE L1 4374 4776 -1370 * 5205 38 81 0 chr9 34470791 34471480 -107799964 - L1P LINE L1 -1942 4204 3460 3542 132 28 46 chr9 34471584 34471848 -107799596 - LTR26 LTR ERV1 -2 601 334 2261 64 58 3 chr9 34471848 34472143 -107799301 + AluY SINE Alu 1 311 0 3542 132 28 46 chr9 34472143 34472490 -107798954 - LTR26 LTR ERV1 -269 334 1 415 193 57 0 chr9 34473771 34473859 -107797585 - LTR40b LTR ERVL 0 462 370 38 39 0 0 chr9 34473909 34473961 -107797483 + AT_rich Low_complexity Low_complexity 1 52 0 24 32 0 0 chr9 34474064 34474095 -107797349 + AT_rich Low_complexity Low_complexity 1 31 0 1350 203 4 4 chr9 34474305 34474541 -107796903 + MER8 DNA MER2_type 1 236 -3 255 378 86 0 chr9 34474546 34474697 -107796747 - L2 LINE L2 -1 3271 3108 603 240 114 94 chr9 34474715 34475124 -107796320 - L1ME4a LINE L1 -63 6452 6018 1009 165 21 5 chr9 34475124 34475318 -107796126 - L1PA16 LINE L1 -7 6159 5963 603 240 114 94 chr9 34475318 34475688 -107795756 - L1ME4a LINE L1 -497 6018 5657 223 321 42 103 chr9 34475779 34475944 -107795500 - MIR SINE MIR -93 169 15 1277 223 68 5 chr9 34476248 34476647 -107794797 - L1ME4a LINE L1 -3440 3100 2677 1024 208 35 76 chr9 34476806 34477147 -107794297 - MLT1A1 LTR MaLR -38 327 1 776 197 96 20 chr9 34477148 34478599 -107792845 - L1ME4a LINE L1 -3917 2623 995 586 288 44 24 chr9 34478608 34478813 -107792631 + L1MDa LINE L1 252 460 -6080 1532 256 116 13 chr9 34478829 34479851 -107791593 - L1MCc LINE L1 -3363 3578 2471 23 33 0 0 chr9 34479851 34479881 -107791563 + AT_rich Low_complexity Low_complexity 1 30 0 25 31 0 0 chr9 34479922 34479954 -107791490 + AT_rich Low_complexity Low_complexity 1 32 0 3368 182 3 5 chr9 34480039 34480676 -107790768 - L1MA7 LINE L1 0 6291 5656 291 146 0 0 chr9 34480692 34480740 -107790704 - L1MA7 LINE L1 -739 5573 5526 1228 222 112 16 chr9 34480745 34481493 -107789951 - L1MCc LINE L1 -4601 2340 1410 369 0 0 0 chr9 34482029 34482070 -107789374 + (CA)n Simple_repeat Simple_repeat 2 42 0 197 118 29 0 chr9 34482236 34482270 -107789174 - L2 LINE L2 0 3272 3238 215 292 131 31 chr9 34484091 34484221 -107787223 - MIR SINE MIR -71 191 49 6763 118 58 81 chr9 34484502 34485832 -107785612 - HSMAR2 DNA Mariner -2 1300 2 381 22 0 0 chr9 34485832 34485878 -107785566 + (TG)n Simple_repeat Simple_repeat 2 47 0 580 264 61 7 chr9 34486797 34487060 -107784384 + L1ME4a LINE L1 5478 5757 -364 13876 195 21 9 chr9 34487161 34493300 -107778144 + L1PB1 LINE L1 6 6516 -351 1032 149 0 0 chr9 34493300 34493518 -107777926 + (TA)n Simple_repeat Simple_repeat 1 218 0 13876 195 21 9 chr9 34493518 34493867 -107777577 + L1PB1 LINE L1 6516 6859 -8 269 226 64 59 chr9 34493875 34494079 -107777365 + L1ME4a LINE L1 5909 6113 -8 21 0 0 0 chr9 34494118 34494139 -107777305 + AT_rich Low_complexity Low_complexity 1 21 0 274 282 70 0 chr9 34494567 34494638 -107776806 - MER91C DNA MER1_type -64 76 1 497 243 37 0 chr9 34494948 34495055 -107776389 - MIR SINE MIR -104 158 48 22 56 0 0 chr9 34497399 34497435 -107774009 + AT_rich Low_complexity Low_complexity 1 36 0 396 359 164 16 chr9 34497489 34497873 -107773571 + L2 LINE L2 2832 3272 0 4854 104 16 30 chr9 34498063 34498883 -107772561 + L1PA16 LINE L1 5356 6163 -3 581 283 30 63 chr9 34498938 34499175 -107772269 - MIR SINE MIR -20 242 14 386 233 61 104 chr9 34500089 34500252 -107771192 + MIR3 SINE MIR 45 200 -8 426 20 0 0 chr9 34501027 34501078 -107770366 + (GA)n Simple_repeat Simple_repeat 1 51 0 1578 219 107 15 chr9 34501324 34501762 -107769682 + MLT2B1 LTR ERVL 1 488 -32 317 82 20 0 chr9 34501762 34501811 -107769633 + (TCTA)n Simple_repeat Simple_repeat 2 51 0 1578 219 107 15 chr9 34501811 34501848 -107769596 + MLT2B1 LTR ERVL 488 520 0 623 183 0 0 chr9 34501848 34501963 -107769481 + MLT1A2-int LTR MaLR 1 115 -1256 * 2034 194 52 9 chr9 34501954 34502418 -107769026 + MLT1A2-int LTR MaLR 260 743 -628 234 275 0 0 chr9 34502533 34502602 -107768842 + MLT1A2-int LTR MaLR 679 747 -988 38 22 0 0 chr9 34502660 34502705 -107768739 + AT_rich Low_complexity Low_complexity 1 45 0 1620 163 23 20 chr9 34502731 34503032 -107768412 + MLT1A2-int LTR MaLR 1353 1654 -81 1052 246 69 17 chr9 34503032 34503320 -107768124 + MLT1A2 LTR MaLR 68 370 -4 254 226 156 54 chr9 34503885 34504018 -107767426 + MIR3 SINE MIR 10 153 -66 214 359 72 24 chr9 34504295 34504462 -107766982 + L2 LINE L2 2916 3090 -182 322 261 189 9 chr9 34504611 34504722 -107766722 + MER5A DNA MER1_type 59 189 0 365 345 122 0 chr9 34504971 34505119 -107766325 - MER91B DNA MER1_type -11 179 14 460 290 79 47 chr9 34505412 34505704 -107765740 - MLT1H1 LTR MaLR -188 367 100 225 365 56 24 chr9 34506042 34506168 -107765276 + MIR3 SINE MIR 2 131 -77 2431 35 0 3 chr9 34506522 34506824 -107764620 - AluY SINE Alu 0 301 1 25 0 0 0 chr9 34507293 34507318 -107764126 + AT_rich Low_complexity Low_complexity 1 25 0 1700 201 112 57 chr9 34507431 34507923 -107763521 + MLT2B1 LTR ERVL 1 519 -1 262 191 221 0 chr9 34508912 34508980 -107762464 + MIR SINE MIR 180 262 0 3450 114 88 25 chr9 34509057 34509524 -107761920 - Tigger3b DNA MER2_type -1797 1231 708 2362 62 27 0 chr9 34509524 34509816 -107761628 - AluSc SINE Alu -9 300 1 3450 114 88 25 chr9 34509816 34510022 -107761422 - Tigger3b DNA MER2_type -2320 708 516 2653 145 15 13 chr9 34510228 34510689 -107760755 - Tigger3b DNA MER2_type -768 463 2 27 0 0 0 chr9 34511632 34511659 -107759785 + AT_rich Low_complexity Low_complexity 1 27 0 265 378 111 0 chr9 34511843 34511978 -107759466 + MLT1K LTR MaLR 2 151 -437 1275 86 19 0 chr9 34511980 34512142 -107759302 - AluSx SINE Alu -147 165 1 473 293 68 15 chr9 34512214 34512419 -107759025 + MLT1K LTR MaLR 369 584 -4 276 274 217 9 chr9 34512699 34512805 -107758639 - MER5A DNA MER1_type -1 188 61 1815 124 0 12 chr9 34512831 34513089 -107758355 - AluSg SINE Alu -55 255 1 320 242 0 0 chr9 34513091 34513157 -107758287 - MER5A DNA MER1_type -115 74 9 2048 171 63 145 chr9 34514042 34514834 -107756610 + LTR8A LTR ERV1 1 727 0 400 310 16 8 chr9 34516059 34516188 -107755256 + MER5A DNA MER1_type 38 167 -22 25 0 0 0 chr9 34516238 34516263 -107755181 + AT_rich Low_complexity Low_complexity 1 25 0 489 254 132 52 chr9 34516573 34516931 -107754513 - MLT1F1 LTR MaLR 0 593 179 396 138 0 0 chr9 34516931 34516996 -107754448 + (GA)n Simple_repeat Simple_repeat 1 65 0 739 204 47 43 chr9 34516996 34517207 -107754237 - MLT1F1 LTR MaLR -355 212 1 223 235 0 0 chr9 34517222 34517273 -107754171 - MER91B DNA MER1_type -136 54 4 674 333 120 28 chr9 34517471 34518238 -107753206 + L2 LINE L2 2482 3313 0 926 206 131 14 chr9 34518331 34518545 -107752899 - MER8 DNA MER2_type 0 239 1 211 288 55 27 chr9 34519140 34519213 -107752231 + L2 LINE L2 3198 3272 0 194 350 80 10 chr9 34520053 34520153 -107751291 - L2 LINE L2 -43 3229 3123 1520 258 60 35 chr9 34520272 34520818 -107750626 - MLT1E LTR MaLR -2 591 32 193 339 50 50 chr9 34521034 34521067 -107750377 - L2 LINE L2 -464 2850 2818 1539 115 23 109 chr9 34521067 34521415 -107750029 + L1MA10 LINE L1 6015 6332 -2 193 339 50 50 chr9 34521415 34521561 -107749883 - L2 LINE L2 -495 2819 2671 239 212 12 82 chr9 34522003 34522088 -107749356 + MIR3 SINE MIR 118 196 -12 2531 74 0 0 chr9 34522124 34522433 -107749011 + AluY SINE Alu 1 309 -2 31 0 0 0 chr9 34523194 34523225 -107748219 + AT_rich Low_complexity Low_complexity 1 31 0 3207 222 22 53 chr9 34523313 34523803 -107747641 - L1ME1 LINE L1 -9 6157 5653 234 0 0 0 chr9 34523803 34523829 -107747615 + (TG)n Simple_repeat Simple_repeat 1 26 0 3207 222 22 53 chr9 34523829 34524503 -107746941 - L1ME1 LINE L1 -513 5653 4999 249 135 0 0 chr9 34524503 34524540 -107746904 + U2 snRNA snRNA 1 37 -151 3207 222 22 53 chr9 34524540 34524650 -107746794 - L1ME1 LINE L1 -1167 4999 4887 432 236 55 6 chr9 34524641 34524806 -107746638 - L1M4 LINE L1 -893 5253 5081 * 198 367 114 30 chr9 34525614 34525807 -107745637 + L2 LINE L2 1613 1788 -1526 2479 56 0 10 chr9 34525807 34526112 -107745332 - AluY SINE Alu -9 302 1 198 367 114 30 chr9 34526112 34526349 -107745095 + L2 LINE L2 1788 2079 -1235 2458 43 3 55 chr9 34528340 34528666 -107742778 + AluY SINE Alu 1 309 -2 217 337 43 11 chr9 34528666 34528758 -107742686 - MIR SINE MIR -69 139 45 319 323 42 48 chr9 34528956 34529287 -107742157 - L1M4 LINE L1 -802 5344 5016 620 176 0 0 chr9 34529332 34529434 -107742010 + AluJ/FLAM SINE Alu 1 102 -210 279 0 0 0 chr9 34530657 34530688 -107740756 + (CA)n Simple_repeat Simple_repeat 1 31 0 445 272 64 35 chr9 34531386 34531559 -107739885 - MIR3 SINE MIR -7 201 24 21 0 0 0 chr9 34532035 34532056 -107739388 + AT_rich Low_complexity Low_complexity 1 21 0 409 342 56 60 chr9 34532564 34532830 -107738614 - L2 LINE L2 -58 3214 2950 38 39 0 0 chr9 34533044 34533096 -107738348 + AT_rich Low_complexity Low_complexity 1 52 0 415 332 97 8 chr9 34535179 34535426 -107736018 + L2 LINE L2 3006 3274 -39 3203 174 49 22 chr9 34535824 34536094 -107735350 - L1MD2 LINE L1 0 6359 6098 2180 103 143 11 chr9 34536094 34536472 -107734972 + MSTA LTR MaLR 1 428 0 3203 174 49 22 chr9 34536472 34536889 -107734555 - L1MD2 LINE L1 -261 6098 5653 2373 129 86 14 chr9 34537054 34537473 -107733971 - L1PA16 LINE L1 0 6166 5718 1654 201 39 0 chr9 34537473 34537857 -107733587 - L1M4 LINE L1 -1384 4762 4364 1901 203 101 53 chr9 34537870 34538248 -107733196 + L1MC4 LINE L1 7407 7826 -216 1608 184 10 19 chr9 34538248 34538558 -107732886 - AluJo SINE Alu -3 309 3 1901 203 101 53 chr9 34538558 34538785 -107732659 + L1MC4 LINE L1 7826 8041 -1 231 151 38 38 chr9 34538804 34538857 -107732587 + L2 LINE L2 3245 3297 -16 654 322 59 22 chr9 34539301 34539745 -107731699 - L1ME4a LINE L1 -193 5928 5469 303 315 22 11 chr9 34539803 34539892 -107731552 + MER5B DNA MER1_type 1 90 -88 1504 143 147 16 chr9 34540264 34540578 -107730866 + L1PA15 LINE L1 5811 6165 0 3438 160 42 30 chr9 34540688 34541400 -107730044 - L1MD1 LINE L1 -6 6630 5910 1402 111 0 5 chr9 34541400 34541589 -107729855 + THE1B LTR MaLR 2 189 -175 428 151 0 14 chr9 34541594 34541667 -107729777 + THE1B LTR MaLR 304 375 0 4822 226 85 71 chr9 34541667 34543175 -107728269 - L1MD1 LINE L1 -743 5797 4312 2053 123 17 0 chr9 34543175 34543468 -107727976 - AluSx SINE Alu -12 300 3 4822 226 85 71 chr9 34543468 34543708 -107727736 - L1MD1 LINE L1 -2228 4312 4077 644 227 0 16 chr9 34543708 34543836 -107727608 + FLAM_A SINE Alu 1 126 -7 4822 226 85 71 chr9 34543836 34544204 -107727240 - L1MD1 LINE L1 -2463 4077 3786 2860 127 47 2 chr9 34544204 34544668 -107726776 - MER31A LTR ERV1 0 485 1 4822 226 85 71 chr9 34544668 34544978 -107726466 - L1MD1 LINE L1 -2754 3786 3482 1721 257 32 28 chr9 34544971 34545441 -107726003 - L1MD1 LINE L1 -5904 636 165 * 5688 177 13 21 chr9 34545420 34545984 -107725460 - L1MA4A LINE L1 -301 6396 5829 1555 158 75 7 chr9 34545984 34546263 -107725181 - AluJb SINE Alu -14 298 1 5688 177 13 21 chr9 34546263 34547578 -107723866 - L1MA4A LINE L1 -868 5829 4529 42222 38 24 1 chr9 34548178 34554190 -107717254 + L1PA3 LINE L1 2 6151 -4 3159 23 0 18 chr9 34554200 34554586 -107716858 + L1PA4 LINE L1 5770 6148 -7 2149 109 3 10 chr9 34554922 34555234 -107716210 + AluSq SINE Alu 1 310 -3 1212 174 81 4 chr9 34555491 34555738 -107715706 - ORSL DNA AcHobo -9 266 1 336 293 41 24 chr9 34555745 34555868 -107715576 + L2 LINE L2 3188 3312 -1 751 261 28 51 chr9 34556257 34556510 -107714934 - MIR SINE MIR -13 249 3 1933 159 0 14 chr9 34556734 34557029 -107714415 + AluSx SINE Alu 1 291 -21 3138 84 18 14 chr9 34557519 34557961 -107713483 + MLT2A1 LTR ERVL 1 444 0 213 154 0 0 chr9 34558031 34558070 -107713374 + (TGAA)n Simple_repeat Simple_repeat 3 41 0 3542 166 6 3 chr9 34558138 34558771 -107712673 - L1PA16 LINE L1 0 6166 5532 253 252 9 139 chr9 34560858 34560973 -107710471 - MIR3 SINE MIR -13 195 96 761 307 29 0 chr9 34560980 34561221 -107710223 - MER90 LTR ERV1 -4 610 363 43093 47 1 1 chr9 34561258 34567409 -107704035 + L1PA4 LINE L1 1 6155 0 1369 211 29 0 chr9 34567615 34567966 -107703478 - L1MA4 LINE L1 -5 6295 5935 732 145 109 7 chr9 34568147 34568285 -107703159 - Tigger1 DNA MER2_type -1464 954 803 857 285 136 35 chr9 34568442 34569280 -107702164 + HAL1 LINE L1 1585 2507 0 274 250 22 43 chr9 34569372 34569464 -107701980 + L1MDa LINE L1 3 92 -6448 280 192 53 0 chr9 34569575 34569692 -107701752 + L1M4 LINE L1 5188 5311 -848 2081 103 164 14 chr9 34569692 34570052 -107701392 - MSTA LTR MaLR 0 428 15 314 141 104 178 chr9 34570102 34570265 -107701179 + L1MD3 LINE L1 7832 7982 -13 259 367 69 11 chr9 34570341 34570529 -107700915 + MIR SINE MIR 57 255 -7 1762 136 63 41 chr9 34571368 34571735 -107699709 - THE1C LTR MaLR 0 375 1 237 228 88 44 chr9 34571852 34571966 -107699478 + L1MDa LINE L1 478 596 -5934 391 322 26 41 chr9 34572039 34572306 -107699138 + L1MDa LINE L1 1059 1321 -5209 2021 126 4 0 chr9 34572306 34572605 -107698839 + AluSg SINE Alu 1 300 0 295 279 105 12 chr9 34572841 34573013 -107698431 + L1ME1 LINE L1 5774 5961 -205 23 0 0 0 chr9 34573162 34573185 -107698259 + AT_rich Low_complexity Low_complexity 1 23 0 483 220 193 7 chr9 34576550 34576700 -107694744 - MER5B DNA MER1_type 0 178 1 22 0 0 0 chr9 34577441 34577463 -107693981 + AT_rich Low_complexity Low_complexity 1 22 0 1967 139 3 0 chr9 34577463 34577751 -107693693 - AluSx SINE Alu -23 289 1 200 277 48 48 chr9 34579746 34579829 -107691615 + MIR SINE MIR 158 240 -22 12558 193 29 14 chr9 34579879 34580539 -107690905 + L1MA4A LINE L1 2489 3137 -3166 2227 86 3 26 chr9 34580539 34580841 -107690603 + AluSc SINE Alu 1 295 -14 12558 193 29 14 chr9 34580841 34583854 -107687590 + L1MA4A LINE L1 3137 6280 -23 1821 236 42 11 chr9 34583870 34584341 -107687103 - Charlie1a DNA MER1_type -968 487 2 467 165 46 9 chr9 34584572 34584681 -107686763 + LTR50 LTR ERVL 556 668 -127 1739 202 19 11 chr9 34584683 34585045 -107686399 - MER89 LTR ERV1 0 559 195 412 135 54 0 chr9 34585027 34585101 -107686343 - MER89 LTR ERV1 -481 78 1 * 355 176 40 0 chr9 34585104 34585178 -107686266 + LTR50 LTR ERVL 711 787 -8 326 278 56 0 chr9 34585350 34585458 -107685986 + MER81 DNA DNA 1 114 0 1220 200 54 70 chr9 34586943 34587479 -107683965 - MER67C LTR ERV1 0 514 2 841 229 64 24 chr9 34587562 34587811 -107683633 - MER67C-int LTR ERV1 -100 4836 4578 333 241 0 35 chr9 34587946 34588033 -107683411 - MER67C-int LTR ERV1 -371 4565 4482 260 191 48 0 chr9 34588154 34588217 -107683227 - MER67C-int LTR ERV1 -735 4201 4136 19222 38 2 2 chr9 34588226 34591367 -107680077 - L1PA5 LINE L1 -4 6150 3006 512 215 9 0 chr9 34591371 34591478 -107679966 + MER31-int LTR ERV1 4006 4113 -823 2002 148 10 3 chr9 34591690 34591993 -107679451 - AluSx SINE Alu -7 305 1 2675 193 72 32 chr9 34592002 34592224 -107679220 - MER63C DNA MER1_type -312 748 536 1689 194 0 0 chr9 34592224 34592508 -107678936 - AluJb SINE Alu -28 284 1 2675 193 72 32 chr9 34592508 34593004 -107678440 - MER63C DNA MER1_type -524 536 1 2169 135 0 0 chr9 34593203 34593500 -107677944 + AluSx SINE Alu 1 297 -15 2291 117 3 0 chr9 34595457 34595764 -107675680 - AluSx SINE Alu -4 308 1 303 49 0 0 chr9 34596055 34596096 -107675348 + (TG)n Simple_repeat Simple_repeat 2 42 0 576 238 100 57 chr9 34596103 34596323 -107675121 - MIR SINE MIR -14 248 19 2228 93 14 0 chr9 34596458 34596747 -107674697 + AluSc SINE Alu 1 293 -16 438 328 111 15 chr9 34597381 34597770 -107673674 + L2 LINE L2 2549 2979 -293 265 318 24 0 chr9 34597821 34597906 -107673538 + L2 LINE L2 3147 3233 -39 2401 97 0 0 chr9 34599408 34599718 -107671726 - AluSg SINE Alu 0 310 1 2249 114 0 7 chr9 34599953 34600260 -107671184 + AluSx SINE Alu 1 305 -7 213 269 19 0 chr9 34601530 34601582 -107669862 + L2 LINE L2 3261 3313 0 262 173 0 93 chr9 34602101 34602176 -107669268 + MIR SINE MIR 195 262 0 283 265 82 41 chr9 34603766 34603864 -107667580 - MIR3 SINE MIR -23 185 84 1794 131 32 18 chr9 34603878 34604183 -107667261 + AluSx SINE Alu 1 309 0 730 246 66 6 chr9 34604518 34604701 -107666743 - MER91A DNA MER1_type 0 196 3 221 241 0 17 chr9 34604854 34604912 -107666532 + GA-rich Low_complexity Low_complexity 3 59 0 799 267 36 24 chr9 34606503 34606750 -107664694 - MIR SINE MIR -1 261 12 2402 76 3 0 chr9 34606905 34607196 -107664248 + AluSg SINE Alu 1 292 -18 4208 174 43 13 chr9 34608084 34608752 -107662692 - L1MB2 LINE L1 -1 6170 5524 2348 100 0 3 chr9 34608752 34609062 -107662382 - AluSg SINE Alu -1 309 1 4208 174 43 13 chr9 34609062 34609221 -107662223 - L1MB2 LINE L1 -647 5524 5371 2120 92 11 0 chr9 34609221 34609494 -107661950 - AluSx SINE Alu -12 300 25 4208 174 43 13 chr9 34609494 34609831 -107661613 - L1MB2 LINE L1 -800 5371 4970 1841 146 45 0 chr9 34609831 34610215 -107661229 + MLT2B2 LTR ERVL 1 448 -67 256 71 95 0 chr9 34610278 34610320 -107661124 + MLT2B2 LTR ERVL 475 520 0 3006 201 67 17 chr9 34610324 34611027 -107660417 - L1MB2 LINE L1 -1181 4965 4214 2388 52 0 14 chr9 34611027 34611349 -107660095 + AluY SINE Alu 1 318 0 3006 201 67 17 chr9 34611349 34611452 -107659992 - L1MB2 LINE L1 -1932 4214 4118 702 122 20 41 chr9 34611584 34611731 -107659713 + MER72 LTR ERV1 181 324 -398 261 0 0 0 chr9 34612780 34612809 -107658635 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2621 32 7 3 chr9 34613304 34613613 -107657831 + AluY SINE Alu 1 310 -1 6467 123 36 6 chr9 34613697 34615748 -107655696 + L1MA2 LINE L1 4188 6304 0 21 0 0 0 chr9 34615748 34615769 -107655675 + AT_rich Low_complexity Low_complexity 1 21 0 360 325 29 48 chr9 34616016 34616225 -107655219 + MIR SINE MIR 2 206 -56 * 409 362 29 14 chr9 34616196 34616403 -107655041 - L2 LINE L2 -975 2339 2130 252 309 94 40 chr9 34617701 34617850 -107653594 - MIR SINE MIR -101 161 5 230 290 30 20 chr9 34618023 34618123 -107653321 - MIR SINE MIR -13 249 149 298 0 0 0 chr9 34619036 34619072 -107652372 + L1MA5A LINE L1 6041 6076 -221 2459 46 10 3 chr9 34619226 34619533 -107651911 + AluY SINE Alu 1 309 -2 439 317 131 6 chr9 34620387 34620570 -107650874 + MIR SINE MIR 2 207 -55 2005 112 6 3 chr9 34620696 34621009 -107650435 - L1MA5A LINE L1 -6 6291 5978 332 394 80 0 chr9 34621107 34621244 -107650200 - MIR3 SINE MIR -57 151 4 547 230 79 43 chr9 34621334 34621372 -107650072 - MLT1J LTR MaLR -19 492 457 1498 134 124 18 chr9 34621372 34621647 -107649797 + AluSg1 SINE Alu 1 304 -5 547 230 79 43 chr9 34621647 34621957 -107649487 - MLT1J LTR MaLR -54 457 108 2475 207 28 32 chr9 34622251 34622902 -107648542 + L1MB7 LINE L1 5476 6123 -61 806 173 0 0 chr9 34622902 34623029 -107648415 - FLAM_C SINE Alu -6 127 1 4147 76 2 13 chr9 34623828 34624382 -107647062 - L1PA8A LINE L1 -2 6129 5582 21 0 0 0 chr9 34624387 34624408 -107647036 + AT_rich Low_complexity Low_complexity 1 21 0 358 283 62 68 chr9 34624580 34624678 -107646766 + L1M4 LINE L1 3651 3749 -2397 1599 185 15 52 chr9 34624678 34625002 -107646442 + AluJo SINE Alu 1 312 0 358 283 62 68 chr9 34625002 34625080 -107646364 + L1M4 LINE L1 3749 3826 -2320 198 0 0 0 chr9 34625080 34625102 -107646342 + (T)n Simple_repeat Simple_repeat 1 22 0 2188 124 0 10 chr9 34625121 34625435 -107646009 + AluSq SINE Alu 1 311 -2 2073 117 3 0 chr9 34625486 34625820 -107645624 + AluSx SINE Alu 1 335 0 545 147 46 18 chr9 34625828 34625937 -107645507 + MLT1H1 LTR MaLR 23 134 -421 629 193 9 0 chr9 34625963 34626077 -107645367 + FLAM_C SINE Alu 1 115 -28 333 68 0 0 chr9 34626084 34626128 -107645316 + (TC)n Simple_repeat Simple_repeat 1 44 0 357 24 0 0 chr9 34626128 34626170 -107645274 + (CA)n Simple_repeat Simple_repeat 1 42 0 915 183 170 54 chr9 34626259 34626576 -107644868 + MLT1H1 LTR MaLR 202 555 0 312 229 42 17 chr9 34626729 34626847 -107644597 + L1ME LINE L1 5617 5737 -384 2006 147 13 0 chr9 34627294 34627600 -107643844 - AluJo SINE Alu -2 310 1 268 238 50 0 chr9 34628551 34628631 -107642813 - MLT1J LTR MaLR 0 511 428 453 280 29 11 chr9 34628729 34628904 -107642540 - MLT1J LTR MaLR -331 180 3 280 272 0 11 chr9 34628965 34629057 -107642387 - L1ME LINE L1 -342 5822 5732 265 243 45 73 chr9 34629335 34629536 -107641908 + L1ME LINE L1 5628 5818 -303 204 67 0 0 chr9 34630102 34630132 -107641312 + (CCA)n Simple_repeat Simple_repeat 3 32 0 1416 186 10 71 chr9 34630497 34630808 -107640636 - AluJo SINE Alu -20 292 1 214 195 0 0 chr9 34631573 34631614 -107639830 + (TA)n Simple_repeat Simple_repeat 1 41 0 1395 139 171 4 chr9 34632394 34632639 -107638805 - AluSc SINE Alu -13 286 1 2212 120 7 0 chr9 34632760 34633068 -107638376 + AluSx SINE Alu 1 310 -2 289 274 140 13 chr9 34633856 34634013 -107637431 - L2 LINE L2 -214 3058 2882 1333 199 95 43 chr9 34634480 34634726 -107636718 + MER20B DNA MER1_type 1 233 -550 216 0 0 0 chr9 34634726 34634750 -107636694 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1333 199 95 43 chr9 34634750 34634774 -107636670 + MER20B DNA MER1_type 233 254 -529 213 39 0 0 chr9 34634774 34634800 -107636644 + (TGG)n Simple_repeat Simple_repeat 3 28 0 1333 199 95 43 chr9 34634800 34634919 -107636525 + MER20B DNA MER1_type 254 411 -372 3357 136 34 8 chr9 34635071 34635599 -107635845 - MER72 LTR ERV1 0 722 181 4943 199 64 18 chr9 34635732 34635835 -107635609 + L1M3 LINE L1 4118 4215 -1956 2410 52 0 14 chr9 34635835 34636157 -107635287 - AluY SINE Alu 0 318 1 4943 199 64 18 chr9 34636157 34636863 -107634581 + L1M3 LINE L1 4215 4887 -1284 2347 127 139 86 chr9 34636863 34637352 -107634092 - MLT2B2 LTR ERVL 0 515 1 4943 199 64 18 chr9 34637352 34637691 -107633753 + L1M3 LINE L1 4887 5341 -830 2111 92 11 0 chr9 34637691 34637962 -107633482 + AluSx SINE Alu 27 300 -12 4943 199 64 18 chr9 34637962 34638118 -107633326 + L1M3 LINE L1 5341 5488 -683 2177 131 0 3 chr9 34638121 34638426 -107633018 + AluSg SINE Alu 1 304 -6 392 280 52 16 chr9 34638438 34638763 -107632681 - L1ME LINE L1 -658 5508 5176 252 0 0 0 chr9 34638862 34638890 -107632554 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 2129 113 7 0 chr9 34638892 34639176 -107632268 - AluSq SINE Alu -27 286 1 1008 145 0 6 chr9 34639181 34639340 -107632104 - FRAM SINE Alu -19 157 1 1466 294 34 25 chr9 34639449 34640099 -107631345 - L1ME LINE L1 -1299 4847 4192 453 154 0 0 chr9 34640668 34640733 -107630711 - AluJ/FLAM SINE Alu -239 73 9 956 180 0 72 chr9 34640733 34640927 -107630517 + AluJo SINE Alu 107 286 -26 310 340 46 39 chr9 34641088 34641241 -107630203 + L2 LINE L2 3118 3271 -1 271 221 147 0 chr9 34641307 34641402 -107630042 - L1MB8 LINE L1 -27 6151 6043 21 0 0 0 chr9 34641582 34641603 -107629841 + AT_rich Low_complexity Low_complexity 1 21 0 4435 76 2 13 chr9 34641608 34642162 -107629282 + L1PA8A LINE L1 5582 6129 -2 858 173 0 0 chr9 34642961 34643088 -107628356 + FLAM_C SINE Alu 1 127 -6 2747 207 28 32 chr9 34643088 34643739 -107627705 - L1MB7 LINE L1 -61 6123 5476 635 227 79 43 chr9 34644033 34644343 -107627101 + MLT1J LTR MaLR 108 457 -54 1551 138 120 14 chr9 34644343 34644619 -107626825 - AluSg SINE Alu -5 305 1 635 227 79 43 chr9 34644619 34644657 -107626787 + MLT1J LTR MaLR 457 492 -19 323 394 80 0 chr9 34644747 34644884 -107626560 + MIR3 SINE MIR 4 151 -57 2176 112 6 3 chr9 34644982 34645295 -107626149 + L1MA5A LINE L1 5978 6291 -6 442 317 131 6 chr9 34645421 34645604 -107625840 - MIR SINE MIR -55 207 2 2487 46 10 3 chr9 34646458 34646765 -107624679 - AluY SINE Alu -2 309 1 319 0 0 0 chr9 34646919 34646955 -107624489 - L1MA5 LINE L1 -226 6074 6039 226 290 30 20 chr9 34647868 34647968 -107623476 + MIR SINE MIR 149 249 -13 244 309 94 40 chr9 34648141 34648290 -107623154 + MIR SINE MIR 5 161 -101 398 362 29 14 chr9 34649588 34649795 -107621649 + L2 LINE L2 2130 2339 -975 330 325 29 48 chr9 34649766 34649975 -107621469 - MIR SINE MIR -56 206 2 * 21 0 0 0 chr9 34650222 34650243 -107621201 + AT_rich Low_complexity Low_complexity 1 21 0 7101 121 36 6 chr9 34650243 34652294 -107619150 - L1MA2 LINE L1 0 6304 4188 2899 7 0 0 chr9 34652378 34652687 -107618757 - AluY SINE Alu -2 309 1 1209 297 41 18 chr9 34652891 34653383 -107618061 + L2 LINE L2 2294 2796 -518 286 337 22 0 chr9 34653424 34653513 -107617931 + L2 LINE L2 2905 2995 -277 312 302 22 95 chr9 34653713 34653935 -107617509 + LTR67 LTR ERVL 352 557 0 276 324 9 9 chr9 34653971 34654076 -107617368 + L2 LINE L2 3168 3272 0 3705 202 24 38 chr9 34654562 34654730 -107616714 - L1ME1 LINE L1 0 6166 5999 1318 258 51 92 chr9 34654730 34655206 -107616238 - L1MB1 LINE L1 -166 6002 5508 2459 90 0 0 chr9 34655206 34655516 -107615928 + AluSx SINE Alu 1 310 -2 1318 258 51 92 chr9 34655516 34655589 -107615855 - L1MB1 LINE L1 -660 5508 5434 2198 111 0 7 chr9 34655589 34655878 -107615566 + AluSx SINE Alu 1 287 -25 1318 258 51 92 chr9 34655878 34656098 -107615346 - L1MB1 LINE L1 -734 5434 5264 5316 229 56 36 chr9 34656099 34656638 -107614806 - L1MB1 LINE L1 -1530 4616 4089 724 191 0 52 chr9 34656638 34656774 -107614670 + FLAM_A SINE Alu 5 133 0 5316 229 56 36 chr9 34656774 34657863 -107613581 - L1MB1 LINE L1 -2057 4089 2955 7086 77 24 5 chr9 34657870 34658846 -107612598 - L1PA10 LINE L1 0 6168 5191 554 234 29 6 chr9 34658854 34659025 -107612419 - L1MEc LINE L1 -5413 983 809 316 284 46 0 chr9 34659011 34659120 -107612324 - L1MEc LINE L1 -5886 510 397 * 1047 255 66 7 chr9 34659154 34659440 -107612004 - L1MEc LINE L1 -6055 341 39 2260 95 16 0 chr9 34659736 34660041 -107611403 + AluSp SINE Alu 1 310 -3 869 286 143 26 chr9 34661484 34661869 -107609575 + MLT1J2 LTR MaLR 21 450 0 2034 107 11 11 chr9 34662678 34662982 -107608462 - AluSx SINE Alu 0 306 3 1972 180 12 0 chr9 34663025 34663369 -107608075 + Tigger1 DNA MER2_type 1 348 -2070 * 8581 85 6 3 chr9 34663368 34664513 -107606931 + Tigger1 DNA MER2_type 826 1973 -445 3866 122 35 61 chr9 34664957 34665528 -107605916 + L1MA7 LINE L1 5587 6138 -153 2007 155 3 3 chr9 34665528 34665838 -107605606 - AluJb SINE Alu -2 310 1 3866 122 35 61 chr9 34665838 34665971 -107605473 + L1MA7 LINE L1 6138 6273 -18 811 142 8 8 chr9 34665973 34666100 -107605344 - FLAM_C SINE Alu -16 127 1 2449 58 7 3 chr9 34667130 34667440 -107604004 - AluY SINE Alu 0 311 1 261 0 0 0 chr9 34667935 34667964 -107603480 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 882 265 89 45 chr9 34668856 34669388 -107602056 + LTR38B LTR ERV1 1 591 -11 585 190 90 0 chr9 34669632 34669732 -107601712 - FLAM_C SINE Alu -33 110 2 799 231 68 36 chr9 34669753 34670060 -107601384 - L1MC5 LINE L1 -36 7925 7609 1268 240 72 36 chr9 34670064 34670564 -107600880 - L1MC5 LINE L1 -446 7515 6998 3823 178 63 41 chr9 34670683 34670787 -107600657 - MER21B LTR ERV1 -99 764 664 4368 93 9 2 chr9 34670787 34671337 -107600107 - MER41A LTR ERV1 0 554 1 3823 178 63 41 chr9 34671337 34671980 -107599464 - MER21B LTR ERV1 -199 664 1 1136 145 10 117 chr9 34671980 34672270 -107599174 - L1MC5 LINE L1 -960 7001 6743 459 244 0 0 chr9 34672270 34672360 -107599084 + Charlie1b DNA MER1_type 1 90 -433 1392 154 112 70 chr9 34672361 34672449 -107598995 + MER2 DNA MER2_type 2 85 -260 1798 209 36 50 chr9 34672449 34672889 -107598555 - MER57B LTR ERV1 0 434 1 1392 154 112 70 chr9 34672889 34672966 -107598478 + MER2 DNA MER2_type 85 157 -188 3688 140 60 15 chr9 34672966 34673551 -107597893 + LTR36 LTR ERV1 1 611 0 1392 154 112 70 chr9 34673551 34673714 -107597730 + MER2 DNA MER2_type 157 345 0 945 174 47 6 chr9 34673743 34674057 -107597387 + Charlie1b DNA MER1_type 118 523 0 510 279 19 43 chr9 34674057 34674265 -107597179 - L1MC4a LINE L1 -1064 6744 6542 2531 57 3 0 chr9 34674420 34674718 -107596726 - AluY SINE Alu -12 299 1 1284 135 47 38 chr9 34674805 34675138 -107596306 + Tigger2a DNA MER2_type 2 437 -7 1335 199 122 53 chr9 34675265 34675642 -107595802 - MER57A LTR ERV1 0 403 1 418 275 130 44 chr9 34675642 34675980 -107595464 - L1MC4a LINE L1 -1652 6156 5790 1293 159 35 5 chr9 34675992 34676395 -107595049 + LTR54 LTR ERV1 9 509 -1 275 223 96 21 chr9 34676398 34676492 -107594952 - L1MC4a LINE L1 -2025 5783 5683 202 204 161 43 chr9 34676568 34676661 -107594783 - MIR SINE MIR -107 155 52 192 344 67 0 chr9 34676616 34676706 -107594738 + MER5B DNA MER1_type 61 156 -22 * 511 290 62 0 chr9 34678063 34678225 -107593219 - MIR SINE MIR -20 242 71 4853 112 13 148 chr9 34680180 34680392 -107591052 - Tigger1 DNA MER2_type 0 2418 2179 1512 220 7 14 chr9 34680392 34680688 -107590756 + AluJo SINE Alu 1 294 -18 2458 78 0 3 chr9 34680690 34680996 -107590448 + AluSc SINE Alu 1 305 -4 4853 112 13 148 chr9 34680996 34681159 -107590285 - Tigger1 DNA MER2_type -240 2178 1995 2367 90 0 0 chr9 34681159 34681459 -107589985 + AluSg SINE Alu 1 300 -10 4853 112 13 148 chr9 34681459 34682142 -107589302 - Tigger1 DNA MER2_type -423 1995 1499 950 122 0 0 chr9 34682142 34682273 -107589171 - AluSg/x SINE Alu -14 298 168 2157 161 10 36 chr9 34682273 34682583 -107588861 - Tigger1 DNA MER2_type -1936 482 182 1998 98 44 0 chr9 34682583 34682858 -107588586 + AluSx SINE Alu 1 287 -25 2157 161 10 36 chr9 34682858 34682937 -107588507 - Tigger1 DNA MER2_type -2236 182 103 2148 123 0 3 chr9 34684216 34684518 -107586926 - AluSq SINE Alu -12 301 1 230 200 44 89 chr9 34684864 34684896 -107586548 + L1MC/D LINE L1 5675 5707 -414 2215 116 3 0 chr9 34684896 34685197 -107586247 - AluSx SINE Alu -10 302 1 230 200 44 89 chr9 34685197 34685254 -107586190 + L1MC/D LINE L1 5707 5760 -361 345 158 66 40 chr9 34685263 34685339 -107586105 - MER116 DNA Mariner 0 80 3 577 197 8 8 chr9 34685764 34685881 -107585563 - Tigger1 DNA MER2_type -2301 117 1 3994 203 74 73 chr9 34685883 34686586 -107584858 + L1MC4 LINE L1 6473 7174 -868 1463 157 75 37 chr9 34686586 34686880 -107584564 + AluJo SINE Alu 3 307 -5 3994 203 74 73 chr9 34686880 34687608 -107583836 + L1MC4 LINE L1 7174 7905 -137 233 116 23 0 chr9 34687612 34687655 -107583789 + L1MC4a LINE L1 7763 7806 -2 227 370 49 29 chr9 34688288 34688534 -107582910 - L2 LINE L2 -647 2667 2417 2032 145 0 10 chr9 34688577 34688880 -107582564 + AluSx SINE Alu 1 300 -12 1329 245 207 27 chr9 34690272 34691179 -107580265 - L2 LINE L2 -3 3310 2233 206 244 0 0 chr9 34691317 34691362 -107580082 + T-rich Low_complexity Low_complexity 1 45 0 201 39 0 0 chr9 34691435 34691461 -107579983 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 2485 65 0 0 chr9 34691794 34692087 -107579357 + AluY SINE Alu 1 293 -18 2219 101 16 0 chr9 34692428 34692734 -107578710 + AluSq SINE Alu 1 311 -2 1952 131 3 17 chr9 34692745 34693042 -107578402 + AluSx SINE Alu 10 302 -10 2242 100 10 19 chr9 34693047 34693358 -107578086 + AluSx SINE Alu 1 308 -4 317 263 0 0 chr9 34693688 34693764 -107577680 - MLT1J2 LTR MaLR -28 422 347 360 224 0 13 chr9 34693850 34693926 -107577518 - MLT1J1 LTR MaLR -262 184 110 769 153 23 8 chr9 34694943 34695074 -107576370 - FLAM_C SINE Alu 0 133 1 299 213 56 137 chr9 34695474 34695671 -107575773 - MLT1J1 LTR MaLR -12 434 254 224 315 37 46 chr9 34695677 34695785 -107575659 - MIR SINE MIR -151 111 5 289 365 155 13 chr9 34695906 34696216 -107575228 - L3 LINE CR1 -201 1376 1023 2242 69 21 3 chr9 34696717 34697006 -107574438 + AluY SINE Alu 1 294 -17 353 301 65 85 chr9 34699279 34699677 -107571767 - L1M2 LINE L1 -5495 1354 965 318 271 85 39 chr9 34699678 34699807 -107571637 + MIR SINE MIR 20 154 -108 354 264 176 6 chr9 34700614 34700773 -107570671 - MIR SINE MIR -10 252 67 2375 73 7 0 chr9 34700877 34701178 -107570266 - AluY SINE Alu -8 303 1 1216 307 35 12 chr9 34701384 34701876 -107569568 + L2 LINE L2 2294 2796 -518 287 337 22 0 chr9 34701917 34702006 -107569438 + L2 LINE L2 2905 2995 -277 268 352 16 8 chr9 34702303 34702428 -107569016 + LTR67 LTR ERVL 432 557 0 301 333 9 9 chr9 34702458 34702569 -107568875 + L2 LINE L2 3162 3272 0 3310 200 24 45 chr9 34703057 34703223 -107568221 - L1ME1 LINE L1 -2 6164 5999 1014 256 50 99 chr9 34703223 34703699 -107567745 - L1MB1 LINE L1 -166 6002 5504 2418 89 0 0 chr9 34703699 34704003 -107567441 + AluSx SINE Alu 1 304 -8 1014 256 50 99 chr9 34704003 34704082 -107567362 - L1MB1 LINE L1 -664 5504 5423 2145 111 3 7 chr9 34704082 34704370 -107567074 + AluSx SINE Alu 1 287 -25 1014 256 50 99 chr9 34704370 34704590 -107566854 - L1MB1 LINE L1 -745 5423 5264 4576 232 55 35 chr9 34704591 34705130 -107566314 - L1MB1 LINE L1 -1530 4616 4089 673 191 0 52 chr9 34705130 34705266 -107566178 + FLAM_A SINE Alu 5 133 0 4576 232 55 35 chr9 34705266 34706355 -107565089 - L1MB1 LINE L1 -2057 4089 2955 6601 76 20 0 chr9 34706365 34707329 -107564115 - L1PA10 LINE L1 -3 6165 5200 473 246 43 5 chr9 34707329 34707516 -107563928 - L1MEc LINE L1 -5394 1002 809 280 284 46 0 chr9 34707502 34707611 -107563833 - L1MEc LINE L1 -5886 510 397 * 951 255 66 7 chr9 34707645 34707931 -107563513 - L1MEc LINE L1 -6055 341 39 2255 95 16 0 chr9 34708227 34708532 -107562912 + AluSp SINE Alu 1 310 -3 740 286 143 26 chr9 34709974 34710359 -107561085 + MLT1J2 LTR MaLR 21 450 0 2031 107 11 11 chr9 34711168 34711472 -107559972 - AluSx SINE Alu 0 306 3 1812 180 12 0 chr9 34711515 34711859 -107559585 + Tigger1 DNA MER2_type 1 348 -2070 * 7966 85 6 3 chr9 34711858 34713003 -107558441 + Tigger1 DNA MER2_type 826 1973 -445 3513 121 36 61 chr9 34713447 34714018 -107557426 + L1MA7 LINE L1 5587 6138 -153 2027 155 3 3 chr9 34714018 34714328 -107557116 - AluJb SINE Alu -2 310 1 3513 121 36 61 chr9 34714328 34714459 -107556985 + L1MA7 LINE L1 6138 6271 -20 858 141 0 8 chr9 34714463 34714591 -107556853 - FLAM_C SINE Alu -16 127 1 1936 176 82 37 chr9 34715658 34715690 -107555754 - L1MB8 LINE L1 0 6178 6149 2247 63 0 60 chr9 34715690 34716007 -107555437 + AluY SINE Alu 1 298 -13 1936 176 82 37 chr9 34716007 34716514 -107554930 - L1MB8 LINE L1 -29 6149 5615 735 134 22 30 chr9 34716619 34716753 -107554691 - FLAM_C SINE Alu 0 133 1 1031 141 7 0 chr9 34716776 34716950 -107554494 - AluJb SINE Alu 0 308 134 21 0 0 0 chr9 34717001 34717022 -107554422 + AT_rich Low_complexity Low_complexity 1 21 0 289 309 18 95 chr9 34717320 34717488 -107553956 - MIR3 SINE MIR -52 156 2 2163 115 26 0 chr9 34718056 34718360 -107553084 - AluSq SINE Alu -1 312 1 301 191 60 36 chr9 34718666 34718750 -107552694 - MIR SINE MIR 0 262 177 598 246 164 14 chr9 34719147 34719354 -107552090 - MIR SINE MIR -18 244 7 200 184 0 0 chr9 34721819 34721857 -107549587 + GA-rich Low_complexity Low_complexity 2 39 0 24 32 0 0 chr9 34722565 34722596 -107548848 + AT_rich Low_complexity Low_complexity 1 31 0 277 216 32 112 chr9 34723314 34723382 -107548062 - L2 LINE L2 0 3313 3258 2187 109 6 13 chr9 34723382 34723693 -107547751 - AluSg SINE Alu 0 310 2 277 216 32 112 chr9 34723693 34723749 -107547695 - L2 LINE L2 -55 3258 3199 341 303 149 79 chr9 34724264 34724524 -107546920 + L2 LINE L2 2413 2654 -660 2137 104 7 17 chr9 34724524 34724823 -107546621 - AluSx SINE Alu -16 296 1 341 303 149 79 chr9 34724823 34725080 -107546364 + L2 LINE L2 2654 2966 -348 186 333 99 0 chr9 34727487 34727568 -107543876 - L2 LINE L2 0 3272 3184 885 161 58 0 chr9 34727707 34727862 -107543582 + FRAM SINE Alu 11 174 -2 213 343 34 68 chr9 34727871 34728136 -107543308 - L2 LINE L2 -698 2616 2361 578 220 45 0 chr9 34728167 34728299 -107543145 + MER3 DNA MER1_type 61 198 -11 21 0 0 0 chr9 34728300 34728321 -107543123 + AT_rich Low_complexity Low_complexity 1 21 0 268 346 51 21 chr9 34728430 34728664 -107542780 - L2 LINE L2 -1005 2309 2069 276 285 132 14 chr9 34728903 34729047 -107542397 + L2 LINE L2 937 1097 -2217 727 164 0 55 chr9 34729111 34729257 -107542187 - FLAM_C SINE Alu -5 138 1 398 250 0 0 chr9 34729258 34729354 -107542090 - MER58 DNA MER1_type -114 101 6 233 346 152 14 chr9 34729357 34729574 -107541870 + L2 LINE L2 1100 1346 -1968 284 273 91 0 chr9 34729765 34729853 -107541591 - MLT1H LTR MaLR -204 345 250 283 237 193 30 chr9 34729855 34729990 -107541454 + L2 LINE L2 3051 3207 -106 536 263 253 18 chr9 34729998 34730283 -107541161 + L2 LINE L2 2397 2748 -566 1415 74 268 17 chr9 34730285 34730541 -107540903 + AluY SINE Alu 1 314 0 2054 123 10 27 chr9 34730709 34731010 -107540434 - AluSx SINE Alu -16 296 1 474 277 204 15 chr9 34731028 34731302 -107540142 + L2 LINE L2 2988 3313 0 937 42 0 8 chr9 34731345 34731464 -107539980 - L1PA10 LINE L1 -3 6165 6048 561 308 66 49 chr9 34731770 34732237 -107539207 + L1ME LINE L1 918 1392 -5539 257 244 61 0 chr9 34732421 34732503 -107538941 + L1ME LINE L1 1401 1487 -5444 374 234 50 44 chr9 34732524 34732788 -107538656 + L1ME LINE L1 1358 1797 -4888 * 553 269 89 34 chr9 34732782 34733109 -107538335 + L1ME LINE L1 2456 2800 -4322 266 164 73 0 chr9 34733317 34733372 -107538072 + L1ME LINE L1 3987 4045 -2896 231 243 27 0 chr9 34733388 34733462 -107537982 + L1ME LINE L1 4127 4202 -2739 1055 207 108 30 chr9 34733464 34733503 -107537941 - MER93a LTR ERV1 0 402 367 2137 121 6 13 chr9 34733503 34733817 -107537627 + AluSx SINE Alu 1 312 0 1055 207 108 30 chr9 34733817 34734100 -107537344 - MER93a LTR ERV1 -35 367 1 3225 216 90 99 chr9 34734100 34734832 -107536612 + L1ME LINE L1 4201 4938 -2021 1573 142 105 8 chr9 34734832 34735099 -107536345 + AluJb SINE Alu 1 293 -19 3225 216 90 99 chr9 34735099 34735280 -107536164 + L1ME LINE L1 4938 5119 -1840 2227 108 0 0 chr9 34735280 34735585 -107535859 - AluSx SINE Alu -7 305 1 3225 216 90 99 chr9 34735585 34735689 -107535755 + L1ME LINE L1 5119 5222 -1737 1017 122 0 112 chr9 34735689 34735886 -107535558 + FAM SINE Alu 1 175 0 3225 216 90 99 chr9 34735886 34736092 -107535352 + L1ME LINE L1 5222 5428 -1531 681 138 0 18 chr9 34736092 34736201 -107535243 + FRAM SINE Alu 68 174 -2 3225 216 90 99 chr9 34736201 34737109 -107534335 + L1ME LINE L1 5428 6422 -537 1376 192 0 28 chr9 34737949 34738240 -107533204 - SVA Other Other -276 1110 828 2191 195 100 112 chr9 34738298 34738364 -107533080 + L1ME2 LINE L1 4357 4422 -1742 1095 122 0 112 chr9 34738364 34738561 -107532883 + FAM SINE Alu 1 175 0 2191 195 100 112 chr9 34738561 34738767 -107532677 + L1ME2 LINE L1 4422 4629 -1535 687 136 0 18 chr9 34738767 34738877 -107532567 + FRAM SINE Alu 68 175 -1 2191 195 100 112 chr9 34738877 34739790 -107531654 + L1ME2 LINE L1 4629 5627 -537 389 194 28 2 chr9 34739804 34739895 -107531549 + L1ME2 LINE L1 6067 6162 -4 335 240 0 0 chr9 34740492 34740567 -107530877 - MIR SINE MIR -73 135 61 523 214 0 0 chr9 34741223 34741326 -107530118 - L1 LINE L1 -3451 2695 2593 * 34743 87 9 54 chr9 34741316 34747759 -107523685 - L1PA4 LINE L1 -1 6154 12 216 0 0 0 chr9 34747806 34747830 -107523614 + (A)n Simple_repeat Simple_repeat 1 24 0 837 268 0 11 chr9 34748239 34748429 -107523015 + AluJo SINE Alu 118 305 -7 358 231 98 10 chr9 34748826 34748950 -107522494 + MIR SINE MIR 50 188 -63 3791 101 38 23 chr9 34749949 34750553 -107520891 - LOR1-int LTR ERV1 -3321 4799 4187 17020 33 1 0 chr9 34750653 34753337 -107518107 + L1PA2 LINE L1 3470 6155 0 502 200 60 43 chr9 34753434 34753619 -107517825 + L1MC/D LINE L1 5260 5447 -2361 41635 35 24 2 chr9 34754099 34759903 -107511541 - L1PA4 LINE L1 -2 6153 218 966 239 54 28 chr9 34760004 34760394 -107511050 - L1MEc LINE L1 -2792 3423 3024 7086 77 24 5 chr9 34760401 34761377 -107510067 - L1PA10 LINE L1 0 6168 5191 554 234 29 6 chr9 34761385 34761556 -107509888 - L1MEc LINE L1 -5413 983 809 316 284 46 0 chr9 34761542 34761651 -107509793 - L1MEc LINE L1 -5886 510 397 * 1047 255 66 7 chr9 34761685 34761971 -107509473 - L1MEc LINE L1 -6055 341 39 2289 111 3 0 chr9 34762267 34762574 -107508870 + AluSp SINE Alu 1 308 -5 258 162 0 0 chr9 34762587 34762624 -107508820 + Alu SINE Alu 1 37 -264 * 297 79 0 0 chr9 34762623 34762661 -107508783 + FLAM SINE Alu 86 123 -10 488 188 69 31 chr9 34762684 34762844 -107508600 + MER20B DNA MER1_type 581 746 -37 1720 171 30 13 chr9 34763431 34763730 -107507714 + AluJo SINE Alu 1 304 -8 22 0 0 0 chr9 34763944 34763966 -107507478 + AT_rich Low_complexity Low_complexity 1 22 0 201 293 13 13 chr9 34764148 34764223 -107507221 + GA-rich Low_complexity Low_complexity 2 76 0 26 0 0 0 chr9 34764658 34764684 -107506760 + AT_rich Low_complexity Low_complexity 1 26 0 186 333 0 0 chr9 34764716 34764773 -107506671 + L2 LINE L2 3257 3313 0 233 309 21 21 chr9 34764954 34765048 -107506396 - L2 LINE L2 -12 3301 3208 2255 121 0 0 chr9 34765424 34765729 -107505715 + AluSx SINE Alu 1 305 -7 2338 169 38 116 chr9 34765757 34766223 -107505221 - L1ME LINE L1 -361 5805 5304 1728 172 3 35 chr9 34766223 34766537 -107504907 - AluJo SINE Alu 0 312 9 2338 169 38 116 chr9 34766537 34767190 -107504254 - L1ME LINE L1 -862 5304 4747 24 0 0 0 chr9 34767696 34767720 -107503724 + AT_rich Low_complexity Low_complexity 1 24 0 186 103 0 0 chr9 34767742 34767771 -107503673 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 246 314 20 69 chr9 34767817 34767919 -107503525 - L2 LINE L2 -82 3190 3094 1198 343 136 25 chr9 34767956 34769684 -107501760 + L2 LINE L2 1280 3240 -32 1469 188 34 35 chr9 34769693 34769743 -107501701 - MLT1D LTR MaLR 0 505 456 2029 104 7 0 chr9 34769743 34770012 -107501432 - AluSx SINE Alu -6 306 36 1469 188 34 35 chr9 34770012 34770408 -107501036 - MLT1D LTR MaLR -49 456 1 239 367 45 28 chr9 34770440 34770617 -107500827 - L2 LINE L2 -214 3058 2879 243 257 137 29 chr9 34771026 34771201 -107500243 - L1ME4a LINE L1 -14 6107 5914 530 275 87 106 chr9 34771865 34772232 -107499212 + L2 LINE L2 2903 3262 -10 218 333 125 0 chr9 34772242 34772338 -107499106 - L2 LINE L2 -8 3264 3157 2231 99 10 3 chr9 34772622 34772916 -107498528 - AluSx SINE Alu -16 296 1 2375 53 23 23 chr9 34778668 34778969 -107492475 - AluY SINE Alu -10 301 1 1957 129 7 7 chr9 34778979 34779266 -107492178 - AluSx SINE Alu -25 287 1 814 171 0 23 chr9 34779394 34779523 -107491921 - FLAM_C SINE Alu -7 126 1 1183 255 96 33 chr9 34779524 34780204 -107491240 - L1ME4a LINE L1 -259 5911 5176 995 101 20 7 chr9 34780236 34780385 -107491059 - AluSg/x SINE Alu -1 309 159 2011 254 75 31 chr9 34780452 34781196 -107490248 - L1MC4a LINE L1 -1776 6312 5536 364 315 9 30 chr9 34781263 34781523 -107489921 - L1MC4a LINE L1 -4752 1855 1449 1135 158 0 0 chr9 34781529 34781706 -107489738 - AluSx SINE Alu 0 310 134 625 141 0 0 chr9 34781706 34781791 -107489653 - AluSx SINE Alu -227 86 2 522 290 60 47 chr9 34781863 34782301 -107489143 - L1MCa LINE L1 -4905 1511 906 25 0 0 0 chr9 34782408 34782433 -107489011 + AT_rich Low_complexity Low_complexity 1 25 0 2530 279 61 41 chr9 34783030 34784149 -107487295 - L2 LINE L2 -105 3208 1980 2229 68 10 20 chr9 34784150 34784442 -107487002 + AluY SINE Alu 1 289 -22 522 124 0 0 chr9 34784442 34784531 -107486913 + (GGGGA)n Simple_repeat Simple_repeat 1 89 0 25 31 0 0 chr9 34785067 34785099 -107486345 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr9 34785305 34785326 -107486118 + AT_rich Low_complexity Low_complexity 1 21 0 6626 84 17 0 chr9 34785473 34786635 -107484809 - L1PA14 LINE L1 -1 6160 4981 189 107 0 0 chr9 34786723 34786751 -107484693 + (CAT)n Simple_repeat Simple_repeat 3 30 0 21 0 0 0 chr9 34786840 34786861 -107484583 + AT_rich Low_complexity Low_complexity 1 21 0 434 298 38 42 chr9 34786983 34787151 -107484293 - MIR SINE MIR -63 145 5 1845 115 0 83 chr9 34787265 34787579 -107483865 - AluSx SINE Alu -24 288 1 2408 91 0 0 chr9 34788372 34788680 -107482764 + AluY SINE Alu 1 308 -3 1288 153 115 10 chr9 34788933 34789221 -107482223 - MER33 DNA MER1_type -6 318 1 275 215 62 132 chr9 34789394 34789462 -107481982 + MIR SINE MIR 6 60 -202 2012 103 0 81 chr9 34789462 34789783 -107481661 + AluSg SINE Alu 1 295 -15 275 215 62 132 chr9 34789783 34789858 -107481586 + MIR SINE MIR 60 139 -123 344 339 81 11 chr9 34790293 34790479 -107480965 + MIR SINE MIR 10 208 -54 872 261 33 8 chr9 34791388 34791629 -107479815 + MIR SINE MIR 6 252 -10 548 327 10 35 chr9 34791818 34792020 -107479424 - MIR3 SINE MIR -7 201 5 1425 215 115 40 chr9 34792382 34792854 -107478590 + MLT1F1 LTR MaLR 3 506 -59 207 0 0 0 chr9 34793143 34793166 -107478278 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 10963 137 49 4 chr9 34793500 34795222 -107476222 + L1PA14 LINE L1 1032 2831 -4750 * 17795 176 16 5 chr9 34795211 34799492 -107471952 + L1PA14 LINE L1 3275 7599 0 2164 131 0 0 chr9 34799692 34799989 -107471455 - AluSx SINE Alu -15 297 1 1024 103 12 6 chr9 34800013 34800178 -107471266 + (GGAA)n Simple_repeat Simple_repeat 3 168 0 335 274 33 72 chr9 34800863 34801016 -107470428 + MIR SINE MIR 37 183 -79 * 647 265 114 9 chr9 34800997 34801208 -107470236 - MIR SINE MIR -21 241 9 30 0 0 0 chr9 34801799 34801829 -107469615 + AT_rich Low_complexity Low_complexity 1 30 0 284 253 117 93 chr9 34802040 34802202 -107469242 - MIR3 SINE MIR -10 198 33 378 276 32 65 chr9 34802426 34802533 -107468911 - MIR SINE MIR -70 192 83 2323 126 54 14 chr9 34802533 34802883 -107468561 - THE1B LTR MaLR 0 364 1 12313 82 32 1 chr9 34802883 34804416 -107467028 - THE1B-int LTR MaLR 0 1580 1 2264 104 72 23 chr9 34804416 34804763 -107466681 - THE1B LTR MaLR 0 364 1 378 276 32 65 chr9 34804763 34804838 -107466606 - MIR SINE MIR -176 86 14 214 267 89 10 chr9 34805808 34805909 -107465535 + L2 LINE L2 1904 2012 -1302 1005 272 16 4 chr9 34805947 34806193 -107465251 - MIR SINE MIR -12 250 2 659 156 9 0 chr9 34806219 34806328 -107465116 - MLT1A2 LTR MaLR 0 374 265 775 282 97 0 chr9 34806811 34807070 -107464374 + MLT1H LTR MaLR 266 549 0 1261 147 41 9 chr9 34807629 34807847 -107463597 + AluJo SINE Alu 87 311 -1 597 295 50 30 chr9 34807962 34808162 -107463282 + MIR3 SINE MIR 1 204 -4 2395 144 53 5 chr9 34808488 34808883 -107462561 - MSTA LTR MaLR -14 414 1 478 217 0 62 chr9 34809033 34809162 -107462282 - L2 LINE L2 0 3313 3193 262 288 143 114 chr9 34809378 34809771 -107461673 - L2 LINE L2 -1 3271 2868 449 250 23 93 chr9 34809783 34809914 -107461530 + MER5B DNA MER1_type 13 131 -47 2299 100 0 3 chr9 34809914 34810213 -107461231 + AluSc SINE Alu 1 298 -11 449 250 23 93 chr9 34810213 34810253 -107461191 + MER5B DNA MER1_type 131 172 -6 628 250 58 23 chr9 34810277 34810322 -107461122 - MER5A DNA MER1_type 0 189 147 3709 114 39 4 chr9 34810322 34810855 -107460589 + L1PB3 LINE L1 5596 6147 -7 628 250 58 23 chr9 34810855 34810981 -107460463 - MER5A DNA MER1_type -42 147 12 775 201 63 6 chr9 34810996 34811155 -107460289 + MER5A DNA MER1_type 1 168 -21 1798 93 22 0 chr9 34811297 34811522 -107459922 + MER30 DNA MER1_type 1 230 0 295 234 11 64 chr9 34812064 34812158 -107459286 + MIR3 SINE MIR 68 156 -52 5492 74 15 21 chr9 34812480 34813199 -107458245 + L1PA8 LINE L1 5445 6159 -13 358 284 58 39 chr9 34813255 34813410 -107458034 + Charlie8 DNA MER1_type 1 158 -2259 487 237 7 29 chr9 34815131 34815270 -107456174 + MIR3 SINE MIR 68 203 -5 390 248 61 71 chr9 34815577 34815775 -107455669 + MIR3 SINE MIR 9 204 -4 301 295 93 14 chr9 34816309 34816448 -107454996 + MER5A DNA MER1_type 7 156 -33 2197 103 0 10 chr9 34816623 34816913 -107454531 + AluSx SINE Alu 1 287 -25 198 0 0 0 chr9 34817234 34817256 -107454188 + (T)n Simple_repeat Simple_repeat 1 22 0 2251 112 0 0 chr9 34817531 34817836 -107453608 - AluSx SINE Alu -7 305 1 27 0 0 0 chr9 34818548 34818575 -107452869 + AT_rich Low_complexity Low_complexity 1 27 0 739 335 129 45 chr9 34819610 34820682 -107450762 + L2 LINE L2 863 2024 -1290 265 276 281 5 chr9 34820702 34820912 -107450532 + L2 LINE L2 2222 2489 -825 203 61 30 0 chr9 34823446 34823479 -107447965 + (TC)n Simple_repeat Simple_repeat 2 35 0 351 0 0 0 chr9 34823479 34823518 -107447926 + (CA)n Simple_repeat Simple_repeat 1 39 0 554 285 7 7 chr9 34823808 34823945 -107447499 + MIR SINE MIR 21 157 -105 799 154 32 19 chr9 34823981 34824137 -107447307 + L1MA1 LINE L1 14 171 -7394 * 11825 171 14 14 chr9 34824135 34825386 -107446058 + L1MA1 LINE L1 3200 4449 -3116 2112 103 43 0 chr9 34825386 34825668 -107445776 + AluY SINE Alu 10 303 -8 11825 171 14 14 chr9 34825668 34827083 -107444361 + L1MA1 LINE L1 4449 5867 -1698 41020 62 10 6 chr9 34827094 34833214 -107438230 + L1PA4 LINE L1 11 6153 -2 2077 124 7 0 chr9 34833606 34833888 -107437556 + AluSx SINE Alu 1 284 -28 21 82 0 0 chr9 34834363 34834412 -107437032 + AT_rich Low_complexity Low_complexity 1 49 0 7256 106 20 36 chr9 34834870 34836786 -107434658 + L1MA1 LINE L1 5851 7721 0 186 290 101 0 chr9 34836809 34836878 -107434566 + MIR SINE MIR 166 241 -21 5502 86 32 62 chr9 34836890 34837781 -107433663 + SVA Other Other 522 1386 0 2184 25 0 0 chr9 34837941 34838181 -107433263 + L1PA4 LINE L1 5916 6155 0 384 278 45 15 chr9 34839350 34839483 -107431961 + MIR3 SINE MIR 3 139 -69 331 269 151 0 chr9 34841407 34841526 -107429918 + MIR SINE MIR 75 211 -51 559 238 127 79 chr9 34843568 34843883 -107427561 - MLT1K LTR MaLR -50 538 209 309 274 137 16 chr9 34844116 34844240 -107427204 + L2 LINE L2 2920 3058 -214 2172 204 102 11 chr9 34844554 34845074 -107426370 + MLT1F1 LTR MaLR 1 567 0 205 225 0 0 chr9 34847619 34847659 -107423785 + MER5B DNA MER1_type 10 49 -129 289 352 99 0 chr9 34848568 34848730 -107422714 - MIR SINE MIR -11 251 74 316 266 58 50 chr9 34849785 34850026 -107421418 + L2 LINE L2 2864 3106 -166 234 200 40 0 chr9 34850108 34850158 -107421286 + L2 LINE L2 3220 3271 -1 497 274 124 69 chr9 34850914 34851293 -107420151 - MLT1K LTR MaLR -90 498 99 1495 198 22 19 chr9 34851328 34851596 -107419848 + AluJo SINE Alu 1 269 -43 552 104 0 0 chr9 34851598 34851675 -107419769 + MADE1 DNA Mariner 1 77 -3 535 247 63 35 chr9 34851959 34852133 -107419311 - MER20B DNA MER1_type -604 179 1 342 365 122 22 chr9 34852528 34852898 -107418546 + L3 LINE CR1 1067 1473 -104 2429 82 0 32 chr9 34852988 34853329 -107418115 + MER41A LTR ERV1 1 330 -224 43119 37 24 1 chr9 34853329 34859338 -107412106 + L1PA2 LINE L1 4 6155 0 1761 77 25 0 chr9 34859352 34859587 -107411857 + MER41A LTR ERV1 314 554 0 181 158 26 0 chr9 34860938 34860976 -107410468 - L2 LINE L2 -4 3268 3230 183 293 38 115 chr9 34861859 34862016 -107409428 + L2 LINE L2 2915 3059 -213 225 94 0 0 chr9 34862056 34862088 -107409356 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 1216 142 90 5 chr9 34862092 34862303 -107409141 - AluJb SINE Alu -29 283 55 257 303 118 25 chr9 34862370 34862489 -107408955 + L2 LINE L2 3143 3272 0 204 125 0 0 chr9 34863324 34863356 -107408088 + (T)n Simple_repeat Simple_repeat 1 32 0 23 54 0 0 chr9 34863360 34863397 -107408047 + AT_rich Low_complexity Low_complexity 1 37 0 1056 90 0 0 chr9 34863404 34863548 -107407896 - L1PA10 LINE L1 -4 6164 6021 334 56 19 19 chr9 34864906 34864960 -107406484 + (TGGA)n Simple_repeat Simple_repeat 1 54 0 216 255 0 61 chr9 34865714 34865812 -107405632 + GA-rich Low_complexity Low_complexity 4 95 0 381 304 57 18 chr9 34866080 34866425 -107405019 - LTR16C LTR ERVL -47 410 71 240 299 154 0 chr9 34867032 34867149 -107404295 - MIR SINE MIR -75 187 53 413 276 0 0 chr9 34867538 34867636 -107403808 - MLT1K LTR MaLR -329 259 162 1048 232 172 76 chr9 34867773 34868262 -107403182 - MLT1G3 LTR MaLR -33 535 1 2047 103 30 30 chr9 34868451 34868752 -107402692 - AluSc SINE Alu -8 301 1 327 25 0 0 chr9 34869111 34869151 -107402293 + (CA)n Simple_repeat Simple_repeat 2 41 0 2198 113 3 0 chr9 34869414 34869714 -107401730 - AluJb SINE Alu -11 301 1 195 289 0 0 chr9 34870133 34870185 -107401259 + L2 LINE L2 3262 3313 0 502 230 33 26 chr9 34870495 34870647 -107400797 + MER103 DNA DNA 4 156 -10 1502 102 0 0 chr9 34871086 34871273 -107400171 - AluSc SINE Alu -17 292 106 872 118 7 22 chr9 34871279 34871414 -107400030 - FLAM_C SINE Alu 0 143 11 347 276 121 40 chr9 34871519 34871817 -107399627 + L1MC/D LINE L1 4533 4854 -1292 3257 146 87 0 chr9 34871909 34872471 -107398973 - MER73 LTR ERVL -32 612 2 43443 37 21 1 chr9 34872649 34878682 -107392762 + L1PA2 LINE L1 1 6155 0 483 200 60 43 chr9 34878779 34878964 -107392480 + L1MC/D LINE L1 5260 5447 -2361 180 0 0 0 chr9 34879123 34879143 -107392301 + (T)n Simple_repeat Simple_repeat 1 20 0 30 0 0 0 chr9 34879189 34879219 -107392225 + AT_rich Low_complexity Low_complexity 1 30 0 260 277 61 34 chr9 34881189 34881337 -107390107 - MER117 DNA MER1_type -39 158 7 871 187 23 6 chr9 34881351 34881522 -107389922 - MER20 DNA MER1_type 0 219 46 544 323 39 22 chr9 34881964 34882193 -107389251 - MIR SINE MIR -10 252 20 955 193 11 11 chr9 34882625 34882812 -107388632 - MER5A DNA MER1_type 0 189 3 1990 142 0 10 chr9 34884541 34884837 -107386607 - AluSx SINE Alu -19 293 1 452 269 159 10 chr9 34884911 34885119 -107386325 - MIR SINE MIR -1 261 23 2538 156 26 22 chr9 34887020 34887514 -107383930 - MER11A LTR ERVK -1 1265 770 1378 61 0 0 chr9 34887510 34887675 -107383769 - MER11B LTR ERVK -1071 165 1 * 3536 142 35 57 chr9 34888180 34888877 -107382567 + L1MA7 LINE L1 5594 6276 -15 1745 126 4 11 chr9 34888877 34889138 -107382306 + AluSx SINE Alu 54 312 0 3536 142 35 57 chr9 34889138 34889154 -107382290 + L1MA7 LINE L1 6276 6291 0 308 364 55 0 chr9 34889778 34889888 -107381556 - MIR SINE MIR -126 136 21 546 290 148 23 chr9 34890754 34890971 -107380473 + MIR SINE MIR 17 260 -2 2545 248 141 48 chr9 34891162 34891315 -107380129 - L1MEc LINE L1 -2196 4019 3882 3048 107 26 22 chr9 34891315 34891772 -107379672 - L1PB1 LINE L1 -3 6148 5690 2545 248 141 48 chr9 34891772 34893319 -107378125 - L1MEc LINE L1 -2333 3882 2106 430 268 71 28 chr9 34893322 34893676 -107377768 - L1MEc LINE L1 -4974 1422 1054 2144 136 0 3 chr9 34894080 34894382 -107377062 + AluSq SINE Alu 1 301 -12 361 171 23 11 chr9 34894401 34894489 -107376955 + A-rich Low_complexity Low_complexity 3 91 0 209 211 26 0 chr9 34894718 34894756 -107376688 + MIR SINE MIR 206 244 -18 * 226 167 93 19 chr9 34894722 34894776 -107376668 + L2 LINE L2 3256 3313 0 2142 118 3 20 chr9 34895462 34895596 -107375848 + AluSx SINE Alu 1 136 -176 2316 92 3 3 chr9 34895596 34895899 -107375545 + AluSp SINE Alu 1 303 -10 2142 118 3 20 chr9 34895899 34896070 -107375374 + AluSx SINE Alu 136 301 -11 456 230 153 37 chr9 34896197 34896396 -107375048 - MLT1K LTR MaLR -248 340 140 235 294 20 59 chr9 34896836 34896938 -107374506 + MIR SINE MIR 31 128 -80 343 357 101 12 chr9 34897431 34897599 -107373845 + MIR3 SINE MIR 16 198 -10 190 363 0 25 chr9 34898071 34898151 -107373293 + L2 LINE L2 2988 3065 -207 1203 272 78 23 chr9 34898179 34898665 -107372779 - LTR33 LTR ERVL -2 519 7 226 284 174 18 chr9 34898762 34898871 -107372573 + L2 LINE L2 3180 3305 -8 4419 100 58 75 chr9 34899062 34899861 -107371583 - LTR1 LTR ERV1 0 785 1 1055 133 66 0 chr9 34899918 34900084 -107371360 + L1PB3 LINE L1 5978 6154 0 559 147 31 54 chr9 34900095 34900224 -107371220 + LTR37A LTR ERV1 46 171 -255 484 242 93 6 chr9 34900496 34900657 -107370787 + L1ME3A LINE L1 4565 4739 -1407 1911 272 64 27 chr9 34900662 34901147 -107370297 + L1ME3A LINE L1 4783 5249 -921 2456 85 0 0 chr9 34901147 34901454 -107369990 - AluY SINE Alu -4 307 1 1911 272 64 27 chr9 34901454 34902095 -107369349 + L1ME3A LINE L1 5249 5951 -219 987 219 105 42 chr9 34902133 34902465 -107368979 - MLT1G LTR MaLR -7 583 156 235 172 31 31 chr9 34902558 34902622 -107368822 - MLT1G LTR MaLR -459 83 20 310 298 2 56 chr9 34902669 34902784 -107368660 + L1ME3A LINE L1 5970 6078 -84 362 236 30 73 chr9 34902956 34903121 -107368323 + L1ME4a LINE L1 5961 6118 -3 786 236 15 26 chr9 34903650 34903845 -107367599 + MIR SINE MIR 56 248 -14 338 276 46 106 chr9 34903908 34904125 -107367319 - MIR SINE MIR -30 232 29 335 154 26 26 chr9 34905555 34905633 -107365811 - MIR3 SINE MIR -6 202 125 569 253 79 62 chr9 34906137 34906442 -107365002 - L1ME4a LINE L1 -238 5883 5574 240 86 35 17 chr9 34906442 34906500 -107364944 + T-rich Low_complexity Low_complexity 2 60 0 248 267 58 12 chr9 34906792 34906878 -107364566 + L1ME4a LINE L1 6000 6089 -32 1016 199 46 32 chr9 34906895 34906994 -107364450 - MER20 DNA MER1_type 0 219 123 2386 122 130 16 chr9 34906994 34907378 -107364066 + MSTA LTR MaLR 1 428 0 1016 199 46 32 chr9 34907378 34907494 -107363950 - MER20 DNA MER1_type -96 123 1 903 265 50 0 chr9 34907563 34907801 -107363643 - MIR SINE MIR 0 262 13 242 188 31 31 chr9 34908089 34908153 -107363291 + CT-rich Low_complexity Low_complexity 3 66 0 227 189 19 0 chr9 34908167 34908220 -107363224 + CT-rich Low_complexity Low_complexity 4 57 0 1247 253 87 9 chr9 34908558 34909004 -107362440 - LTR16C LTR ERVL -8 483 3 328 239 77 51 chr9 34909029 34909146 -107362298 - L2 LINE L2 0 3272 3153 25 51 0 0 chr9 34909247 34909286 -107362158 + AT_rich Low_complexity Low_complexity 1 39 0 270 313 10 20 chr9 34909381 34909480 -107361964 - MIR3 SINE MIR -102 106 9 185 302 0 0 chr9 34909499 34909542 -107361902 + L2 LINE L2 3208 3250 -22 2417 192 27 10 chr9 34909598 34910077 -107361367 - L1MB7 LINE L1 -153 6267 5781 21 57 0 0 chr9 34910077 34910112 -107361332 + AT_rich Low_complexity Low_complexity 1 35 0 1194 163 0 0 chr9 34911600 34911803 -107359641 - L1MA3 LINE L1 0 6305 6103 478 229 69 0 chr9 34911815 34911959 -107359485 - L1ME3A LINE L1 -10 6160 6007 1143 163 79 40 chr9 34912851 34913128 -107358316 + L1MA8 LINE L1 6003 6290 -1 903 196 43 0 chr9 34913432 34913595 -107357849 + AluJb SINE Alu 130 299 -13 354 204 29 0 chr9 34913595 34913698 -107357746 + GA-rich Low_complexity Low_complexity 1 106 0 205 67 33 0 chr9 34913698 34913728 -107357716 + (GAAAA)n Simple_repeat Simple_repeat 5 35 0 2264 92 0 0 chr9 34913737 34914210 -107357234 + AluY SINE Alu 1 311 0 918 143 12 119 chr9 34914210 34914345 -107357099 + L1 LINE L1 3447 3549 -2597 3684 142 29 11 chr9 34914345 34914972 -107356472 + L1MA4 LINE L1 5662 6299 -1 918 143 12 119 chr9 34914972 34915071 -107356373 + L1 LINE L1 3549 3657 -2489 * 10302 208 86 55 chr9 34915065 34916696 -107354748 - L1MB7 LINE L1 -931 5451 3871 755 177 24 8 chr9 34916696 34916820 -107354624 - AluJo SINE Alu -173 139 14 10302 208 86 55 chr9 34916820 34917314 -107354130 - L1MB7 LINE L1 -2511 3871 3394 1397 147 92 55 chr9 34917314 34917616 -107353828 - AluJb SINE Alu 0 312 1 10302 208 86 55 chr9 34917616 34919533 -107351911 - L1MB7 LINE L1 -2988 3394 1128 902 187 0 7 chr9 34919563 34919713 -107351731 + FAM SINE Alu 10 158 -27 1462 163 74 131 chr9 34919853 34920288 -107351156 + MLT2D LTR ERVL 5 414 0 1259 122 15 24 chr9 34920669 34920907 -107350537 - AluSq SINE Alu 0 337 102 713 215 139 0 chr9 34920958 34921102 -107350342 - FAM SINE Alu -11 164 1 195 288 0 45 chr9 34921167 34921233 -107350211 + L2 LINE L2 3250 3312 -1 358 109 0 0 chr9 34921233 34921279 -107350165 - THE1A LTR MaLR 0 355 310 1250 148 0 0 chr9 34921383 34921566 -107349878 + AluSg/x SINE Alu 120 302 -8 498 304 30 30 chr9 34921765 34922101 -107349343 - L1M4 LINE L1 -1315 4831 4496 1961 141 7 0 chr9 34923220 34923503 -107347941 - AluSx SINE Alu -27 285 1 596 289 101 31 chr9 34923607 34923835 -107347609 + MLT1I LTR MaLR 166 409 0 385 284 73 9 chr9 34923849 34923958 -107347486 + L2 LINE L2 3193 3308 -5 289 284 0 12 chr9 34923969 34924050 -107347394 + MIR3 SINE MIR 128 207 -1 305 366 36 0 chr9 34924611 34924723 -107346721 - MIR3 SINE MIR -7 201 86 212 311 16 49 chr9 34924748 34924870 -107346574 - L2 LINE L2 -780 2534 2417 714 116 9 0 chr9 34924870 34924982 -107346462 + Ricksha DNA DNA 2 114 -1932 517 321 58 49 chr9 34924984 34925330 -107346114 - L2 LINE L2 -975 2339 1991 321 307 113 41 chr9 34925747 34926109 -107345335 + L2 LINE L2 2440 2827 -487 579 251 80 27 chr9 34926183 34926370 -107345074 - MIR SINE MIR -13 249 53 208 261 7 7 chr9 34927757 34927899 -107343545 + GA-rich Low_complexity Low_complexity 1 142 0 307 291 24 63 chr9 34930371 34930498 -107340946 + MIR3 SINE MIR 83 204 -4 242 239 26 94 chr9 34932163 34932280 -107339164 - L1ME4a LINE L1 -72 6049 5941 1985 119 7 18 chr9 34933674 34933986 -107337458 - AluSx SINE Alu 0 309 1 242 328 74 67 chr9 34934118 34934417 -107337027 + L2 LINE L2 2922 3222 -50 21 0 0 0 chr9 34935460 34935481 -107335963 + AT_rich Low_complexity Low_complexity 1 21 0 5500 148 57 10 chr9 34935938 34936107 -107335337 + L1MA7 LINE L1 5082 5242 -1049 2552 113 16 19 chr9 34936107 34936470 -107334974 - THE1B LTR MaLR 0 364 3 5500 148 57 10 chr9 34936470 34937456 -107333988 + L1MA7 LINE L1 5242 6291 0 1371 205 59 62 chr9 34937474 34937864 -107333580 + MSTD LTR MaLR 8 396 0 505 209 11 0 chr9 34938422 34938513 -107332931 - MER5A DNA MER1_type 0 189 98 737 215 139 0 chr9 34938579 34938723 -107332721 - FAM SINE Alu -11 164 1 2285 121 75 26 chr9 34938854 34939201 -107332243 - THE1B LTR MaLR 0 364 1 12933 84 4 0 chr9 34939201 34940775 -107330669 - THE1B-int LTR MaLR 0 1580 1 2316 116 78 20 chr9 34940775 34941119 -107330325 - THE1B LTR MaLR 0 364 1 1004 118 0 0 chr9 34942307 34942442 -107329002 + FLAM_C SINE Alu 2 136 -7 3511 150 51 8 chr9 34942451 34943059 -107328385 + L1MA4 LINE L1 5661 6294 -6 39 0 0 0 chr9 34943059 34943098 -107328346 + AT_rich Low_complexity Low_complexity 1 39 0 1988 155 0 3 chr9 34943113 34943416 -107328028 - AluJb SINE Alu -10 302 1 1023 183 44 28 chr9 34943550 34943767 -107327677 - L1MC4 LINE L1 -811 7231 7008 312 28 0 0 chr9 34943767 34943803 -107327641 - L1MA9 LINE L1 0 6312 6277 1023 183 44 28 chr9 34943803 34943836 -107327608 - L1MC4 LINE L1 -1034 7008 6977 476 241 48 7 chr9 34943837 34943982 -107327462 - L1MC4 LINE L1 -997 7045 6895 2749 214 74 14 chr9 34943985 34944586 -107326858 + L1MC4 LINE L1 7281 7932 -110 1677 207 125 3 chr9 34944586 34944939 -107326505 + MSTD LTR MaLR 1 396 0 2749 214 74 14 chr9 34944939 34945042 -107326402 + L1MC4 LINE L1 7932 8027 -15 1576 271 88 11 chr9 34945204 34945658 -107325786 - LTR16C LTR ERVL 0 491 3 1860 157 45 33 chr9 34945745 34946076 -107325368 - MER1B DNA MER1_type 0 337 3 8802 158 62 21 chr9 34946757 34948349 -107323095 + L1MC1 LINE L1 29 1555 -4871 1508 205 34 3 chr9 34948349 34948646 -107322798 + AluJo SINE Alu 1 306 -6 8802 158 62 21 chr9 34948646 34948664 -107322780 + L1MC1 LINE L1 1555 1571 -4855 615 27 0 0 chr9 34948664 34948737 -107322707 + (GGAA)n Simple_repeat Simple_repeat 4 76 0 8802 158 62 21 chr9 34948737 34949567 -107321877 + L1MC1 LINE L1 1571 2366 -4060 1340 218 56 68 chr9 34949567 34949921 -107321523 + MLT1B LTR MaLR 1 351 -39 1445 211 10 22 chr9 34949921 34950233 -107321211 - AluJo SINE Alu -4 308 1 1340 218 56 68 chr9 34950233 34950273 -107321171 + MLT1B LTR MaLR 351 390 0 8802 158 62 21 chr9 34950273 34951154 -107320290 + L1MC1 LINE L1 2366 3576 -2850 7939 181 32 36 chr9 34951521 34953544 -107317900 + L1MC1 LINE L1 3532 5569 -1044 2113 112 0 4 chr9 34953544 34953822 -107317622 + AluSc SINE Alu 1 277 -32 7939 181 32 36 chr9 34953822 34954861 -107316583 + L1MC1 LINE L1 5569 6611 -2 207 69 0 0 chr9 34955023 34955052 -107316392 + (TG)n Simple_repeat Simple_repeat 2 30 0 2228 110 0 10 chr9 34955613 34955913 -107315531 + AluSq SINE Alu 1 297 -16 228 74 0 0 chr9 34956003 34956030 -107315414 - L1PB3 LINE L1 -65 6089 6063 2154 130 7 0 chr9 34956031 34956339 -107315105 + AluSx SINE Alu 3 312 0 2798 173 122 58 chr9 34957743 34957925 -107313519 + LTR48 LTR ERV1 1 170 -617 1942 84 4 0 chr9 34957925 34958175 -107313269 + L1PA14 LINE L1 5894 6144 -17 2798 173 122 58 chr9 34958175 34958190 -107313254 + LTR48 LTR ERV1 170 183 -604 2130 132 3 0 chr9 34958190 34958501 -107312943 + AluSx SINE Alu 1 312 0 2798 173 122 58 chr9 34958501 34959042 -107312402 + LTR48 LTR ERV1 183 787 0 2325 78 3 0 chr9 34959337 34959633 -107311811 + AluSg SINE Alu 1 297 -13 218 333 0 0 chr9 34959634 34959694 -107311750 + MIR SINE MIR 181 240 -22 182 217 181 0 chr9 34962124 34962207 -107309237 - MIR SINE MIR -66 142 45 635 66 0 0 chr9 34962799 34962875 -107308569 - FLAM_A SINE Alu -33 109 34 2308 84 3 17 chr9 34963651 34963948 -107307496 - AluSg SINE Alu -17 293 1 316 178 22 78 chr9 34963952 34964042 -107307402 + MER113 DNA MER1_type? 38 122 -399 * 376 261 68 34 chr9 34964029 34964205 -107307239 + MER113 DNA MER1_type? 296 477 -44 767 100 0 0 chr9 34964208 34964308 -107307136 + HY1 scRNA scRNA 1 100 -12 194 31 0 62 chr9 34964311 34964343 -107307101 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 470 321 24 19 chr9 34965250 34965459 -107305985 - MIR SINE MIR 0 262 53 2047 164 105 48 chr9 34965846 34966323 -107305121 + MER67D LTR ERV1 6 509 -5 2155 203 45 91 chr9 34966699 34967280 -107304164 + MLT2B3 LTR ERVL 1 554 0 3930 162 55 9 chr9 34967598 34968240 -107303204 + LTR51 LTR ERV1 1 671 0 2627 210 48 6 chr9 34968370 34968889 -107302555 + MER87 LTR ERV1 1 541 0 222 333 111 0 chr9 34969032 34969131 -107302313 - MIR SINE MIR -17 245 136 321 305 139 51 chr9 34969347 34969799 -107301645 - L2 LINE L2 -891 2423 1932 790 265 56 5 chr9 34969887 34970102 -107301342 - MIR SINE MIR 0 262 37 245 292 39 31 chr9 34970353 34970483 -107300961 - L2 LINE L2 -4 3268 3138 1055 99 21 0 chr9 34970723 34970865 -107300579 + L1PB3 LINE L1 6008 6152 -2 24 32 0 0 chr9 34970865 34970896 -107300548 + AT_rich Low_complexity Low_complexity 1 31 0 1297 219 182 25 chr9 34970924 34971326 -107300118 + MER4C LTR ERV1 1 465 0 288 301 0 0 chr9 34971429 34971512 -107299932 - L2 LINE L2 -513 2801 2719 183 276 152 0 chr9 34972133 34972238 -107299206 - L2 LINE L2 -2405 909 789 936 193 155 98 chr9 34972315 34972417 -107299027 + MER34 LTR ERV1 1 96 -446 2508 52 7 3 chr9 34972417 34972727 -107298717 + AluY SINE Alu 1 311 0 936 193 155 98 chr9 34972727 34973122 -107298322 + MER34 LTR ERV1 96 526 -16 277 284 23 23 chr9 34973803 34973891 -107297553 + MIR SINE MIR 172 259 -3 372 43 0 0 chr9 34973892 34973938 -107297506 + (TTA)n Simple_repeat Simple_repeat 3 48 0 747 314 107 25 chr9 34974839 34975467 -107295977 - L2 LINE L2 -650 2664 1986 821 112 17 9 chr9 34975471 34975587 -107295857 + AluSq/x SINE Alu 2 118 -194 484 223 80 46 chr9 34976079 34976254 -107295190 + Charlie8 DNA MER1_type 107 287 -2130 239 240 90 30 chr9 34976336 34976436 -107295008 - L2 LINE L2 -23 3290 3185 195 42 0 0 chr9 34977366 34977390 -107294054 + (TCCC)n Simple_repeat Simple_repeat 3 26 0 696 243 115 35 chr9 34977410 34977636 -107293808 + MIR SINE MIR 4 247 -15 1830 216 42 12 chr9 34977922 34978400 -107293044 - L1ME1 LINE L1 -7 6159 5672 723 191 65 94 chr9 34978763 34978792 -107292652 + L1ME3 LINE L1 5893 5921 -241 2591 144 65 0 chr9 34978792 34979194 -107292250 + MSTC LTR MaLR 1 428 0 723 191 65 94 chr9 34979194 34979441 -107292003 + L1ME3 LINE L1 5921 6161 -1 183 234 0 64 chr9 34979501 34979548 -107291896 + L2 LINE L2 3254 3297 -16 2014 147 0 0 chr9 34979555 34979847 -107291597 + AluSx SINE Alu 6 297 -15 201 244 0 0 chr9 34981777 34981818 -107289626 + (CA)n Simple_repeat Simple_repeat 1 41 0 1537 251 54 68 chr9 34982770 34983438 -107288006 + MER77 LTR ERV1 54 671 -6 834 225 122 0 chr9 34983672 34983894 -107287550 - MIR SINE MIR -3 259 11 231 284 12 49 chr9 34983933 34984014 -107287430 - L2 LINE L2 -791 2523 2446 306 312 177 21 chr9 34984072 34984213 -107287231 + MIR3 SINE MIR 14 176 -32 719 272 73 32 chr9 34984233 34984479 -107286965 + MIR SINE MIR 7 262 0 24 32 0 0 chr9 34984563 34984594 -107286850 + AT_rich Low_complexity Low_complexity 1 31 0 311 252 55 79 chr9 34985537 34985664 -107285780 + L2 LINE L2 3149 3272 0 1279 209 7 7 chr9 34986813 34987086 -107284358 - AluJo SINE Alu 0 312 40 207 194 0 0 chr9 34987253 34987289 -107284155 + MIR SINE MIR 111 146 -116 337 247 0 13 chr9 34988967 34989044 -107282400 - L2 LINE L2 -9 3304 3229 2411 128 11 40 chr9 34989717 34990092 -107281352 - THE1B LTR MaLR 0 364 1 323 280 295 10 chr9 34990426 34990626 -107280818 - MIR SINE MIR -4 258 2 2007 147 0 3 chr9 34990646 34990945 -107280499 - AluSg SINE Alu -10 300 3 534 289 158 11 chr9 34991039 34991312 -107280132 - L2 LINE L2 -1251 2063 1751 899 182 6 38 chr9 34991358 34991517 -107279927 + FRAM SINE Alu 1 154 -12 26 0 0 0 chr9 34991517 34991543 -107279901 + AT_rich Low_complexity Low_complexity 1 26 0 411 335 150 10 chr9 34991570 34991770 -107279674 - MIR SINE MIR -10 252 25 3285 275 113 36 chr9 34991899 34993442 -107278002 + L2 LINE L2 1628 3313 0 221 298 50 66 chr9 34993430 34993551 -107277893 - L2 LINE L2 -1718 1596 1478 * 2084 124 0 0 chr9 34993910 34994228 -107277216 - AluSx SINE Alu 0 318 1 939 162 0 14 chr9 34994272 34994420 -107277024 - AluJo SINE Alu -166 146 1 273 316 46 11 chr9 34994449 34994623 -107276821 - L2 LINE L2 -1193 2121 1942 625 250 17 17 chr9 34994740 34994912 -107276532 + MER5B DNA MER1_type 1 172 -6 2133 120 45 48 chr9 34995095 34995471 -107275973 - THE1C LTR MaLR 0 375 1 618 294 60 24 chr9 34995589 34995841 -107275603 - MIR SINE MIR 0 262 2 21 0 0 0 chr9 34997114 34997135 -107274309 + AT_rich Low_complexity Low_complexity 1 21 0 1743 186 0 10 chr9 34997143 34997454 -107273990 + AluJb SINE Alu 1 308 -4 200 329 7 103 chr9 34997454 34997552 -107273892 - MIR3 SINE MIR -74 134 53 1647 174 0 0 chr9 34997552 34997816 -107273628 + AluJo SINE Alu 37 300 -12 200 329 7 103 chr9 34997816 34997863 -107273581 - MIR3 SINE MIR -155 53 3 279 245 61 71 chr9 34998094 34998290 -107273154 + L2 LINE L2 2126 2319 -995 413 283 158 11 chr9 34998708 34998892 -107272552 - L2 LINE L2 0 3313 3103 * 1161 269 55 36 chr9 34998864 34999333 -107272111 - L2 LINE L2 -2235 1079 602 214 273 76 0 chr9 34999359 34999425 -107272019 + MIR3 SINE MIR 111 181 -27 292 42 0 42 chr9 35000265 35000313 -107271131 + (TTTC)n Simple_repeat Simple_repeat 2 47 0 2159 124 3 10 chr9 35000319 35000633 -107270811 - AluSq SINE Alu -1 312 1 1187 195 0 14 chr9 35000704 35000925 -107270519 + AluJb SINE Alu 82 299 -13 215 191 16 0 chr9 35001494 35001557 -107269887 + (TA)n Simple_repeat Simple_repeat 2 65 0 2517 60 0 0 chr9 35002001 35002299 -107269145 + AluY SINE Alu 1 298 -13 212 0 0 35 chr9 35002302 35002331 -107269113 + (TTAAA)n Simple_repeat Simple_repeat 3 30 0 2298 106 0 10 chr9 35002762 35003074 -107268370 - AluSx SINE Alu -3 309 1 869 200 108 44 chr9 35003133 35003383 -107268061 - L1ME3A LINE L1 0 6170 5905 335 132 19 0 chr9 35003457 35003510 -107267934 + MER92B LTR ERV1 1 54 -582 4931 114 7 8 chr9 35003803 35004525 -107266919 - HERVL-B3 LTR ERVL -4933 721 1 1195 192 46 29 chr9 35004525 35004899 -107266545 - MLT2B3 LTR ERVL 0 554 175 497 251 217 0 chr9 35005470 35005645 -107265799 + MIR SINE MIR 47 259 -3 191 283 0 0 chr9 35005820 35005866 -107265578 + MIR SINE MIR 206 251 -11 2190 125 0 0 chr9 35006531 35006826 -107264618 + AluSq SINE Alu 1 295 -18 286 291 13 73 chr9 35006848 35006999 -107264445 - L1MC5 LINE L1 -95 7866 7725 244 215 354 0 chr9 35007039 35007118 -107264326 + MER91C DNA MER1_type 34 140 0 1266 164 4 61 chr9 35007138 35007369 -107264075 - MER58A DNA MER1_type -1 223 6 260 211 13 40 chr9 35007849 35007925 -107263519 + GA-rich Low_complexity Low_complexity 3 76 0 501 163 0 0 chr9 35008349 35008435 -107263009 + L1M2 LINE L1 5413 5498 -799 287 303 62 91 chr9 35008451 35008659 -107262785 + L2 LINE L2 3027 3228 -44 395 324 58 43 chr9 35009380 35009587 -107261857 - MIR SINE MIR -51 211 2 401 250 71 0 chr9 35011606 35011746 -107259698 + MER117 DNA MER1_type 1 150 -47 499 350 153 14 chr9 35011773 35012139 -107259305 + L3 LINE CR1 813 1229 -348 730 155 16 16 chr9 35012608 35012737 -107258707 + L1MB4 LINE L1 6052 6180 0 709 207 7 22 chr9 35012746 35012881 -107258563 + FLAM_C SINE Alu 1 133 0 493 339 14 32 chr9 35012892 35013110 -107258334 + MIR SINE MIR 1 214 -48 303 276 31 0 chr9 35013143 35013241 -107258203 + L3 LINE CR1 1316 1416 -161 215 302 62 120 chr9 35013901 35014062 -107257382 + L2 LINE L2 3041 3185 -87 720 173 47 0 chr9 35014062 35014189 -107257255 - FLAM_C SINE Alu 0 133 1 215 302 62 120 chr9 35014189 35014269 -107257175 + L2 LINE L2 3185 3268 -4 308 346 118 7 chr9 35014395 35014548 -107256896 - MIR SINE MIR -73 189 20 816 127 42 0 chr9 35014872 35014990 -107256454 + FLAM_C SINE Alu 1 123 -10 23 0 0 0 chr9 35014990 35015013 -107256431 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr9 35015409 35015433 -107256011 + AT_rich Low_complexity Low_complexity 1 24 0 934 137 8 0 chr9 35015442 35015573 -107255871 - FLAM_C SINE Alu -1 132 1 240 35 0 0 chr9 35015835 35015864 -107255580 + (CA)n Simple_repeat Simple_repeat 2 30 0 558 259 78 35 chr9 35016714 35016946 -107254498 + MIR SINE MIR 19 260 -2 739 275 17 30 chr9 35017474 35017707 -107253737 - MIR SINE MIR -31 231 2 661 202 228 54 chr9 35017797 35018342 -107253102 + LTR50 LTR ERVL 6 784 -11 338 195 29 12 chr9 35018360 35018444 -107253000 - MIR3 SINE MIR -45 163 73 362 347 42 6 chr9 35018549 35018716 -107252728 - MIR SINE MIR -87 175 3 230 245 23 0 chr9 35019685 35019799 -107251645 - L2 LINE L2 -5 3308 3214 288 283 106 18 chr9 35019921 35020034 -107251410 + MIR SINE MIR 19 141 -67 2443 90 3 0 chr9 35020189 35020501 -107250943 + AluSp SINE Alu 1 313 0 435 312 133 14 chr9 35020661 35020940 -107250504 - L3 LINE CR1 -3 1574 1263 236 153 306 47 chr9 35021615 35021700 -107249744 - MIR SINE MIR 0 262 156 379 241 65 37 chr9 35021929 35022037 -107249407 - MIR SINE MIR -59 149 39 279 270 101 0 chr9 35022381 35022470 -107248974 + MER113 DNA MER1_type? 3 100 -421 2131 116 0 7 chr9 35022478 35022779 -107248665 - AluSq SINE Alu -14 299 1 252 272 65 22 chr9 35022944 35023036 -107248408 - L3 LINE CR1 -58 1519 1424 243 61 0 0 chr9 35023128 35023161 -107248283 + (T)n Simple_repeat Simple_repeat 1 33 0 506 271 117 14 chr9 35023177 35023389 -107248055 + MIR SINE MIR 19 251 -11 2185 103 0 3 chr9 35023809 35024095 -107247349 + AluSx SINE Alu 1 286 -22 423 0 0 0 chr9 35024095 35024142 -107247302 + (CATA)n Simple_repeat Simple_repeat 2 48 0 225 0 0 0 chr9 35024898 35024923 -107246521 + (A)n Simple_repeat Simple_repeat 1 25 0 2017 140 7 0 chr9 35025289 35025581 -107245863 - AluJo SINE Alu -14 298 5 679 191 70 0 chr9 35025617 35025732 -107245712 - FLAM_C SINE Alu -18 125 3 2851 130 23 2 chr9 35025910 35026341 -107245103 + MER44D DNA MER2_type 3 497 -108 479 170 138 0 chr9 35026448 35026542 -107244902 + MER44D DNA MER2_type 499 605 0 411 299 39 16 chr9 35027250 35027377 -107244067 + MIR SINE MIR 84 213 -49 435 199 26 0 chr9 35027383 35027488 -107243956 + MIR3 SINE MIR 69 177 -31 400 309 49 10 chr9 35028613 35028796 -107242648 - MIR SINE MIR -65 143 3 389 273 25 0 chr9 35028877 35028998 -107242446 - L3 LINE CR1 -252 1325 1202 24 32 0 0 chr9 35029182 35029213 -107242231 + AT_rich Low_complexity Low_complexity 1 31 0 248 222 333 19 chr9 35030842 35030950 -107240494 - L2 LINE L2 -8 3264 3123 189 270 16 16 chr9 35031595 35031658 -107239786 - L3b LINE CR1 -214 1369 1307 260 264 0 0 chr9 35032541 35032594 -107238850 + (TG)n Simple_repeat Simple_repeat 1 53 0 329 248 108 25 chr9 35032685 35032842 -107238602 + L1ME4a LINE L1 5935 6104 -17 499 245 123 0 chr9 35034727 35034882 -107236562 - MER117 DNA MER1_type -22 175 2 417 177 0 0 chr9 35036254 35036333 -107235111 + (TA)n Simple_repeat Simple_repeat 2 80 0 293 200 0 0 chr9 35036338 35036398 -107235046 - L1MC4 LINE L1 -1339 6703 6644 1377 198 8 30 chr9 35036410 35036678 -107234766 + AluJo SINE Alu 5 266 -46 420 193 0 72 chr9 35036680 35036763 -107234681 + AluJo/FRAM SINE Alu 208 284 -28 634 248 149 72 chr9 35036785 35037414 -107234030 - Charlie7 DNA MER1_type -3 2609 1932 1445 153 27 8 chr9 35037415 35037857 -107233587 + L1PA16 LINE L1 4598 5030 -1136 1471 209 7 16 chr9 35037857 35038164 -107233280 + AluJo SINE Alu 6 309 -3 1445 153 27 8 chr9 35038164 35039078 -107232366 + L1PA16 LINE L1 5030 6158 -8 228 35 0 0 chr9 35039078 35039107 -107232337 + (CATA)n Simple_repeat Simple_repeat 2 30 0 1966 197 154 33 chr9 35039136 35039458 -107231986 - Charlie7 DNA MER1_type -653 1959 1677 6825 91 17 8 chr9 35039458 35041187 -107230257 - L1PA15 LINE L1 -6 6159 4405 1966 197 154 33 chr9 35041187 35041528 -107229916 - Charlie7 DNA MER1_type -935 1677 1216 2614 61 0 0 chr9 35041582 35041893 -107229551 + AluY SINE Alu 1 311 0 265 111 32 79 chr9 35042439 35042502 -107228942 - MER52-int LTR ERV1 -887 6204 6145 246 304 80 0 chr9 35044427 35044552 -107226892 + L1ME4a LINE L1 5691 5825 -296 200 333 24 0 chr9 35045230 35045398 -107226046 + (CATATA)n Simple_repeat Simple_repeat 3 174 0 2264 113 3 0 chr9 35045464 35045775 -107225669 + AluSx SINE Alu 1 312 0 203 156 0 0 chr9 35046018 35046050 -107225394 + (TAGA)n Simple_repeat Simple_repeat 1 32 0 4987 161 35 15 chr9 35046173 35046983 -107224461 + LTR1B LTR ERV1 1 826 0 328 248 40 10 chr9 35047046 35047147 -107224297 + L1ME4a LINE L1 6018 6121 0 2223 174 18 8 chr9 35047732 35048118 -107223326 - MLT1B LTR MaLR 0 390 1 209 344 0 16 chr9 35049236 35049300 -107222144 - L2 LINE L2 -13 3300 3238 1914 183 14 6 chr9 35050045 35050394 -107221050 + Tigger6b DNA MER2_type 1 352 -731 1547 152 4 4 chr9 35050386 35050649 -107220795 + Tigger6b DNA MER2_type 377 639 -958 * 4255 151 172 22 chr9 35050649 35051554 -107219890 - pTR5 LTR ERV1 -11 2427 175 1247 214 48 7 chr9 35051554 35051843 -107219601 + Tigger6b DNA MER2_type 626 926 -671 903 188 17 0 chr9 35051842 35052018 -107219426 + Tigger6b DNA MER2_type 1076 1254 -343 * 933 175 52 47 chr9 35052019 35052230 -107219214 + L1MB8 LINE L1 5822 6033 -145 766 266 44 50 chr9 35052579 35052940 -107218504 + L1M4 LINE L1 3223 3581 -2565 1707 158 7 4 chr9 35053059 35053331 -107218113 + AluJo SINE Alu 1 273 -39 22 0 0 0 chr9 35053382 35053404 -107218040 + AT_rich Low_complexity Low_complexity 1 22 0 3259 32 3 0 chr9 35053871 35054290 -107217154 + L1PA3 LINE L1 5756 6175 0 892 159 0 0 chr9 35054935 35055067 -107216377 + AluSq/x SINE Alu 1 132 -180 2216 107 0 3 chr9 35055069 35055358 -107216086 + AluSx SINE Alu 1 288 -24 198 0 0 0 chr9 35055362 35055384 -107216060 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 371 127 0 0 chr9 35055405 35055460 -107215984 + Alu SINE Alu 245 299 -3 264 130 0 0 chr9 35055517 35055563 -107215881 + (CA)n Simple_repeat Simple_repeat 2 47 0 346 332 84 16 chr9 35056124 35056314 -107215130 + L2 LINE L2 2544 2746 -568 333 325 53 35 chr9 35056329 35056498 -107214946 + MER5A DNA MER1_type 15 186 -3 839 155 36 27 chr9 35056953 35057094 -107214350 - MLT2B1 LTR ERVL -56 456 318 675 99 0 0 chr9 35057094 35057195 -107214249 + (CA)n Simple_repeat Simple_repeat 2 102 0 839 155 36 27 chr9 35057195 35057223 -107214221 - MLT2B1 LTR ERVL -194 318 172 1579 277 55 57 chr9 35057363 35057488 -107213956 + L2 LINE L2 2207 2331 -983 1803 179 0 13 chr9 35057488 35057795 -107213649 - AluJb SINE Alu -9 303 1 1579 277 55 57 chr9 35057795 35058437 -107213007 + L2 LINE L2 2331 2972 -342 299 246 0 0 chr9 35058449 35058518 -107212926 - L2 LINE L2 -929 2385 2317 929 136 7 26 chr9 35058523 35058677 -107212767 + AluJb SINE Alu 1 151 -161 510 272 211 4 chr9 35058680 35058945 -107212499 + L2 LINE L2 2994 3313 0 547 243 168 9 chr9 35061084 35061298 -107210146 - MIR SINE MIR -14 248 1 353 144 58 23 chr9 35061791 35061964 -107209480 + (CA)n Simple_repeat Simple_repeat 1 179 0 189 0 0 0 chr9 35062162 35062183 -107209261 + (A)n Simple_repeat Simple_repeat 1 21 0 1397 143 63 0 chr9 35062637 35062875 -107208569 + L1MD3 LINE L1 7730 7982 -13 1239 177 116 14 chr9 35062980 35063257 -107208187 + MER61A LTR ERV1 1 305 -38 1810 122 0 19 chr9 35063360 35063533 -107207911 - AluSx SINE Alu -7 305 137 2202 98 3 32 chr9 35063533 35063848 -107207596 - AluSx SINE Alu -6 306 1 1810 122 0 19 chr9 35063848 35063936 -107207508 - AluSx SINE Alu -175 137 49 2758 131 21 59 chr9 35063936 35064199 -107207245 + MER6A DNA MER2_type 113 384 -481 2455 84 3 0 chr9 35064199 35064508 -107206936 - AluSg SINE Alu 0 310 1 2758 131 21 59 chr9 35064508 35064680 -107206764 + MER6A DNA MER2_type 384 529 -336 4509 141 0 6 chr9 35064680 35065359 -107206085 + L1PA16 LINE L1 5488 6162 -4 2758 131 21 59 chr9 35065359 35065434 -107206010 + MER6A DNA MER2_type 529 605 0 1743 139 18 0 chr9 35065505 35065779 -107205665 + L1MB2 LINE L1 5703 5981 -202 3781 162 51 23 chr9 35065780 35066525 -107204919 - LTR1B LTR ERV1 0 785 1 1071 126 55 11 chr9 35066525 35066707 -107204737 + L1MB2 LINE L1 5979 6168 -3 280 227 52 65 chr9 35066829 35066898 -107204546 - L1ME4a LINE L1 -4 6117 6049 2361 115 0 0 chr9 35066898 35067210 -107204234 + AluSx SINE Alu 1 312 0 280 227 52 65 chr9 35067210 35067294 -107204150 - L1ME4a LINE L1 -72 6049 5966 2176 111 7 3 chr9 35067389 35067711 -107203733 + AluSq SINE Alu 1 313 0 218 347 0 32 chr9 35067715 35067810 -107203634 - MIR3 SINE MIR -7 201 110 422 254 25 33 chr9 35067917 35068039 -107203405 + MIR SINE MIR 2 122 -140 1493 226 93 64 chr9 35068249 35068872 -107202572 - MER50 LTR ERV1 -84 650 10 921 142 36 91 chr9 35069993 35070236 -107201208 + L1MD3 LINE L1 6208 6344 0 189 0 0 0 chr9 35070711 35070732 -107200712 + (A)n Simple_repeat Simple_repeat 1 21 0 2202 88 0 39 chr9 35071603 35071738 -107199706 + AluSp SINE Alu 1 140 -173 2749 32 0 0 chr9 35071738 35072049 -107199395 + AluY SINE Alu 1 311 0 2202 88 0 39 chr9 35072049 35072218 -107199226 + AluSp SINE Alu 140 293 -20 893 159 8 0 chr9 35072338 35072470 -107198974 - FLAM_C SINE Alu 0 133 1 336 291 68 35 chr9 35073568 35073936 -107197508 + HAL1b LINE L1 69 448 -900 2093 120 3 3 chr9 35074207 35074499 -107196945 - AluJb SINE Alu -20 292 1 1892 157 20 81 chr9 35074830 35075054 -107196390 - MLT1A2 LTR MaLR -3 371 179 2141 90 4 4 chr9 35075054 35075360 -107196084 - AluSx SINE Alu 0 311 6 1892 157 20 81 chr9 35075360 35075529 -107195915 - MLT1A2 LTR MaLR -195 179 1 1034 181 0 81 chr9 35076501 35076722 -107194722 + AluJo SINE Alu 85 287 -25 390 321 65 48 chr9 35077227 35077644 -107193800 + L1M4 LINE L1 4067 4490 -1656 670 215 112 22 chr9 35078123 35078346 -107193098 - MLT1J1 LTR MaLR -146 300 58 2005 129 0 0 chr9 35078854 35079133 -107192311 + AluJb SINE Alu 23 301 -11 382 142 46 3 chr9 35079300 35079518 -107191926 + AluJb SINE Alu 1 297 -5 586 221 16 25 chr9 35079840 35079962 -107191482 + FLAM_A SINE Alu 1 121 -12 22 0 0 0 chr9 35079964 35079986 -107191458 + AT_rich Low_complexity Low_complexity 1 22 0 227 306 51 20 chr9 35080628 35080726 -107190718 - MLT1H LTR MaLR -14 535 435 477 297 78 14 chr9 35080811 35081030 -107190414 - MLT1H LTR MaLR -290 259 27 198 71 0 0 chr9 35081565 35081593 -107189851 + (TG)n Simple_repeat Simple_repeat 2 29 0 2431 113 26 37 chr9 35081719 35082098 -107189346 - THE1C LTR MaLR 0 375 1 230 244 35 23 chr9 35082202 35082288 -107189156 + LTR67 LTR ERVL 458 544 -13 333 0 0 0 chr9 35082687 35082724 -107188720 + (CA)n Simple_repeat Simple_repeat 2 38 0 301 258 33 77 chr9 35082766 35082917 -107188527 + L1M4 LINE L1 4532 4675 -1471 2092 109 34 0 chr9 35082917 35083211 -107188233 - AluSg SINE Alu -6 304 1 301 258 33 77 chr9 35083211 35083241 -107188203 + L1M4 LINE L1 4675 4705 -1441 714 163 41 24 chr9 35084000 35084123 -107187321 + FLAM_A SINE Alu 3 127 -6 299 268 92 49 chr9 35084124 35084430 -107187014 + L1M4 LINE L1 4737 5055 -1091 1870 143 84 53 chr9 35084522 35084844 -107186600 + MER1B DNA MER1_type 4 335 -2 482 278 91 78 chr9 35085005 35085314 -107186130 + MLT1J LTR MaLR 3 315 -196 1538 106 0 0 chr9 35085448 35085646 -107185798 - AluSq SINE Alu -8 305 108 924 90 0 0 chr9 35085661 35085772 -107185672 + AluSq/x SINE Alu 12 122 -190 540 199 106 0 chr9 35085775 35085926 -107185518 - MER20B DNA MER1_type -30 753 587 195 230 18 124 chr9 35086517 35086630 -107184814 - L2 LINE L2 -592 2722 2622 2101 116 7 3 chr9 35086631 35086915 -107184529 + AluSx SINE Alu 1 285 -27 25 0 0 0 chr9 35086915 35086940 -107184504 + AT_rich Low_complexity Low_complexity 1 25 0 2906 49 0 6 chr9 35087042 35087388 -107184056 + LTR14A LTR ERVK 1 344 0 396 230 0 0 chr9 35087882 35087956 -107183488 - L2 LINE L2 -1 3312 3239 21 0 0 0 chr9 35088031 35088052 -107183392 + AT_rich Low_complexity Low_complexity 1 21 0 1632 186 17 3 chr9 35088114 35088409 -107183035 - AluJo SINE Alu -13 299 1 2977 138 40 0 chr9 35088429 35088900 -107182544 - L1MA8 LINE L1 -5 6286 5797 495 61 0 0 chr9 35088901 35088967 -107182477 - MER2 DNA MER2_type -159 186 121 854 150 0 8 chr9 35088968 35089101 -107182343 + AluJb SINE Alu 1 132 -180 834 181 0 8 chr9 35089101 35089234 -107182210 - MER2 DNA MER2_type -213 132 1 1725 138 3 0 chr9 35089237 35089526 -107181918 - L1MA8 LINE L1 -771 5375 5086 1689 159 29 7 chr9 35089527 35089803 -107181641 + AluJo SINE Alu 1 282 -30 180 0 0 0 chr9 35089806 35089826 -107181618 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 660 276 60 91 chr9 35091530 35092277 -107179167 - L1M4 LINE L1 -1711 4435 3712 4146 158 68 28 chr9 35092286 35093069 -107178375 - MER21B LTR ERV1 -7 856 43 525 193 9 18 chr9 35093080 35093194 -107178250 + L2 LINE L2 3198 3310 -3 248 0 31 0 chr9 35093303 35093335 -107178109 + (TTG)n Simple_repeat Simple_repeat 2 34 0 2208 102 7 3 chr9 35093337 35093632 -107177812 - AluSx SINE Alu -16 296 1 432 200 200 26 chr9 35093679 35093794 -107177650 + MER5A DNA MER1_type 26 160 -29 674 284 70 80 chr9 35093942 35094059 -107177385 - L1M4 LINE L1 -2679 3467 3350 1914 148 24 10 chr9 35094059 35094356 -107177088 - AluJo SINE Alu -11 301 1 674 284 70 80 chr9 35094356 35094405 -107177039 - L1M4 LINE L1 -2796 3350 3302 3881 172 46 62 chr9 35094405 35095389 -107176055 + LTR5 LTR ERVK 2 969 0 674 284 70 80 chr9 35095389 35095514 -107175930 - L1M4 LINE L1 -2844 3302 3177 2368 85 10 0 chr9 35095514 35095809 -107175635 - AluSg SINE Alu -12 298 1 674 284 70 80 chr9 35095809 35096199 -107175245 - L1M4 LINE L1 -2969 3177 2791 2536 128 43 31 chr9 35096209 35096252 -107175192 - MSTA LTR MaLR 0 428 387 2205 80 3 65 chr9 35096252 35096577 -107174867 + AluSq SINE Alu 1 305 -8 2536 128 43 31 chr9 35096577 35096956 -107174488 - MSTA LTR MaLR -41 387 1 1689 178 0 53 chr9 35097005 35097326 -107174118 + AluJo SINE Alu 1 304 -8 3462 161 7 2 chr9 35097534 35098086 -107173358 - MER41D LTR ERV1 -2 555 1 24 0 0 0 chr9 35098482 35098506 -107172938 + AT_rich Low_complexity Low_complexity 1 24 0 353 307 129 0 chr9 35099381 35099544 -107171900 - MIR SINE MIR -1 261 78 10262 124 15 22 chr9 35101888 35103515 -107167929 + L1PA6 LINE L1 11 1625 -4521 16554 51 7 0 chr9 35103616 35106435 -107165009 + L1PA6 LINE L1 3316 6144 -10 347 185 25 0 chr9 35106437 35106518 -107164926 + (TATATG)n Simple_repeat Simple_repeat 6 88 0 235 174 0 0 chr9 35106518 35106564 -107164880 - LTR66 LTR ERVL -171 439 394 1199 144 0 0 chr9 35106564 35106737 -107164707 + AluSq SINE Alu 127 299 -14 731 199 53 66 chr9 35106889 35107172 -107164272 + L1M4 LINE L1 4890 5166 -980 845 158 0 0 chr9 35107355 35107482 -107163962 + FRAM SINE Alu 44 170 -6 28 61 0 0 chr9 35107667 35107716 -107163728 + AT_rich Low_complexity Low_complexity 1 49 0 1862 140 13 36 chr9 35107716 35108023 -107163421 - AluJb SINE Alu -12 300 1 864 135 15 15 chr9 35108250 35108383 -107163061 + FLAM_C SINE Alu 1 133 0 340 268 73 0 chr9 35108873 35108996 -107162448 + L1M4 LINE L1 3794 3925 -2221 21 36 0 0 chr9 35109257 35109285 -107162159 + AT_rich Low_complexity Low_complexity 1 28 0 483 18 0 0 chr9 35109786 35109842 -107161602 + (CA)n Simple_repeat Simple_repeat 2 57 0 2070 117 0 36 chr9 35110489 35110798 -107160646 - AluSx SINE Alu -14 298 1 21 36 0 0 chr9 35111315 35111343 -107160101 + AT_rich Low_complexity Low_complexity 1 28 0 27 0 0 0 chr9 35112331 35112358 -107159086 + AT_rich Low_complexity Low_complexity 1 27 0 1232 114 0 0 chr9 35112358 35112516 -107158928 + AluSq SINE Alu 1 158 -155 249 318 69 23 chr9 35113378 35113551 -107157893 - MER5A DNA MER1_type -2 187 7 708 220 140 9 chr9 35113654 35113868 -107157576 - MIR SINE MIR -12 250 9 2570 64 0 13 chr9 35113874 35114185 -107157259 - AluY SINE Alu -2 309 3 298 279 29 44 chr9 35114684 35114820 -107156624 + MIR SINE MIR 128 261 -1 636 323 64 41 chr9 35117200 35117796 -107153648 - L2 LINE L2 0 3313 2702 2130 125 13 3 chr9 35117900 35118205 -107153239 + AluSx SINE Alu 3 310 -2 2108 72 4 4 chr9 35118592 35118869 -107152575 + L1PA6 LINE L1 5878 6154 0 1374 192 17 23 chr9 35119685 35119987 -107151457 + AluJo SINE Alu 3 302 0 2220 132 0 0 chr9 35120029 35120332 -107151112 + AluSx SINE Alu 3 305 -7 2935 145 63 10 chr9 35120514 35121018 -107150426 - MER39 LTR ERV1 -86 621 91 207 333 75 0 chr9 35121037 35121157 -107150287 + MIR SINE MIR 110 238 -24 3225 106 0 19 chr9 35121516 35121986 -107149458 - L1PA15 LINE L1 -12 6153 5693 589 302 217 22 chr9 35123028 35123346 -107148098 - L2 LINE L2 -597 2717 2338 5307 199 71 45 chr9 35123353 35123894 -107147550 + L1MC4a LINE L1 6104 6630 -1178 183 80 0 0 chr9 35123894 35123919 -107147525 + (TG)n Simple_repeat Simple_repeat 1 25 0 5307 199 71 45 chr9 35123919 35124887 -107146557 + L1MC4a LINE L1 6630 7652 -156 26 0 0 0 chr9 35125334 35125360 -107146084 + AT_rich Low_complexity Low_complexity 1 26 0 1340 151 46 5 chr9 35125412 35125630 -107145814 - AluJo SINE Alu -1 311 85 1253 220 48 36 chr9 35125638 35126012 -107145432 + L1ME2 LINE L1 5795 6164 0 1933 119 27 70 chr9 35126135 35126506 -107144938 + L1MB3 LINE L1 5822 6176 -7 452 303 108 13 chr9 35127361 35127592 -107143852 - MIR SINE MIR -6 256 4 2426 69 0 3 chr9 35127805 35128093 -107143351 - AluSp SINE Alu -5 308 22 276 53 0 0 chr9 35128511 35128549 -107142895 + (A)n Simple_repeat Simple_repeat 1 38 0 1888 107 68 11 chr9 35128695 35128975 -107142469 - AluSx SINE Alu -16 296 1 2266 100 7 0 chr9 35128980 35129279 -107142165 - AluSp SINE Alu -12 301 1 2208 115 0 16 chr9 35129280 35129592 -107141852 - AluSx SINE Alu -5 307 1 1569 112 0 30 chr9 35130959 35131192 -107140252 + AluJb SINE Alu 85 310 -2 429 274 78 17 chr9 35132457 35132636 -107138808 + MIR SINE MIR 68 257 -5 2186 109 0 0 chr9 35132639 35132951 -107138493 - AluSx SINE Alu 0 312 1 309 343 0 19 chr9 35132965 35133070 -107138374 - L2 LINE L2 -33 3239 3137 266 240 41 107 chr9 35133341 35133399 -107138045 - MER91B DNA MER1_type -60 130 83 2322 105 3 0 chr9 35133399 35133704 -107137740 - AluSp SINE Alu -7 306 1 266 240 41 107 chr9 35133704 35133766 -107137678 - MER91B DNA MER1_type -107 83 18 1999 135 17 0 chr9 35133982 35134271 -107137173 + AluSg SINE Alu 3 296 -14 208 269 52 37 chr9 35134438 35134572 -107136872 - L2 LINE L2 -1022 2292 2157 257 405 33 8 chr9 35135892 35136013 -107135431 + L2 LINE L2 3145 3268 -4 2372 94 7 0 chr9 35136198 35136497 -107134947 - AluSx SINE Alu -11 301 1 722 205 146 6 chr9 35136618 35136789 -107134655 + MER3 DNA MER1_type 2 196 -13 1490 138 17 0 chr9 35136976 35137207 -107134237 + Tigger1 DNA MER2_type 3 237 -2181 6673 120 207 10 chr9 35137212 35138084 -107133360 + Tigger1 DNA MER2_type 997 1696 -722 2591 53 0 3 chr9 35138084 35138387 -107133057 + AluY SINE Alu 1 302 -9 6673 120 207 10 chr9 35138387 35138702 -107132742 + Tigger1 DNA MER2_type 1696 2418 0 1652 155 34 10 chr9 35138757 35139048 -107132396 - AluJo SINE Alu -14 298 1 432 279 234 5 chr9 35139373 35139574 -107131870 - MIR SINE MIR -11 251 5 761 183 16 0 chr9 35139700 35139826 -107131618 + FLAM_A SINE Alu 1 128 -5 209 326 188 0 chr9 35140410 35140554 -107130890 - L2 LINE L2 -635 2679 2509 390 335 67 8 chr9 35140554 35140793 -107130651 - L2 LINE L2 -911 2403 2151 294 239 11 68 chr9 35140799 35140887 -107130557 + L1ME3A LINE L1 6027 6109 -61 3839 45 8 6 chr9 35140888 35141358 -107130086 + L1PA7 LINE L1 5682 6152 -2 256 254 0 0 chr9 35141505 35141564 -107129880 + L2 LINE L2 3191 3249 -64 260 336 105 32 chr9 35141613 35141860 -107129584 - L2 LINE L2 -1317 1997 1733 2318 45 69 3 chr9 35142172 35142460 -107128984 + AluY SINE Alu 1 307 -4 760 293 60 0 chr9 35142508 35142740 -107128704 + MIR SINE MIR 1 246 -16 2220 87 7 3 chr9 35142823 35143111 -107128333 + AluSx SINE Alu 1 289 -23 2424 47 10 13 chr9 35143211 35143512 -107127932 - AluSp SINE Alu -13 300 1 2837 129 29 21 chr9 35144662 35145143 -107126301 + MER31A LTR ERV1 1 485 0 4249 158 61 54 chr9 35145727 35145764 -107125680 - L1MB3 LINE L1 -118 6065 6030 1538 111 202 8 chr9 35145764 35146007 -107125437 + AluSg SINE Alu 1 290 -20 4249 158 61 54 chr9 35146007 35146353 -107125091 - L1MB3 LINE L1 -153 6030 5688 2988 123 7 7 chr9 35146353 35146791 -107124653 + L1PB3 LINE L1 5708 6147 -7 4249 158 61 54 chr9 35146791 35146996 -107124448 - L1MB3 LINE L1 -495 5688 5486 2311 87 0 29 chr9 35146996 35147305 -107124139 - AluSg SINE Alu -10 300 1 4249 158 61 54 chr9 35147305 35147790 -107123654 - L1MB3 LINE L1 -697 5486 4987 2024 148 10 6 chr9 35147790 35148101 -107123343 - AluJo SINE Alu 0 312 1 4249 158 61 54 chr9 35148101 35148421 -107123023 - L1MB3 LINE L1 -1196 4987 4671 234 0 0 0 chr9 35148433 35148459 -107122985 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 736 171 7 29 chr9 35148508 35148648 -107122796 + FLAM_C SINE Alu 2 138 -5 446 177 242 81 chr9 35148655 35148841 -107122603 + MER102b DNA MER1_type 126 341 0 267 33 0 0 chr9 35149013 35149043 -107122401 - MLT2C2 LTR ERVL 0 464 435 2605 68 0 0 chr9 35149086 35149395 -107122049 + AluY SINE Alu 1 309 -2 366 325 69 63 chr9 35149405 35149863 -107121581 - L2 LINE L2 -261 3052 2578 947 248 32 8 chr9 35150159 35150405 -107121039 + LTR16C LTR ERVL 236 487 -4 33 25 0 0 chr9 35150577 35150617 -107120827 + AT_rich Low_complexity Low_complexity 1 40 0 814 153 0 23 chr9 35150776 35150907 -107120537 - FLAM_C SINE Alu -4 129 2 2399 82 0 0 chr9 35150919 35151212 -107120232 - AluSx SINE Alu -12 300 8 262 250 125 91 chr9 35151819 35151881 -107119563 + L2 LINE L2 2636 2694 -620 1653 189 0 26 chr9 35151881 35152183 -107119261 + AluJo SINE Alu 18 311 -1 262 250 125 91 chr9 35152183 35152384 -107119060 + L2 LINE L2 2694 2908 -406 636 225 156 36 chr9 35152713 35152806 -107118638 - L2 LINE L2 0 3313 3233 2412 85 3 0 chr9 35152806 35153101 -107118343 + AluSq SINE Alu 2 297 -16 636 225 156 36 chr9 35153101 35153227 -107118217 - L2 LINE L2 -80 3233 3124 2227 123 0 3 chr9 35153227 35153529 -107117915 + AluSx SINE Alu 1 301 -11 636 225 156 36 chr9 35153529 35153615 -107117829 - L2 LINE L2 -189 3124 2970 274 293 24 49 chr9 35153605 35153656 -107117788 - L2 LINE L2 -546 2768 2717 * 2447 68 3 0 chr9 35153656 35153952 -107117492 - AluSg SINE Alu -13 297 1 274 293 24 49 chr9 35153952 35154023 -107117421 - L2 LINE L2 -597 2717 2649 337 282 94 0 chr9 35154045 35154162 -107117282 - L2 LINE L2 0 3272 3145 731 275 187 29 chr9 35154712 35155192 -107116252 + MLT1G1 LTR MaLR 1 595 0 363 323 30 8 chr9 35155320 35155453 -107115991 + L2 LINE L2 3134 3269 -3 733 238 168 5 chr9 35155517 35155731 -107115713 - MIR SINE MIR -2 260 12 2369 71 10 3 chr9 35155892 35156187 -107115257 + AluY SINE Alu 1 297 -14 343 212 15 0 chr9 35157006 35157072 -107114372 - L2 LINE L2 -3 3269 3203 2394 91 3 0 chr9 35157727 35158025 -107113419 - AluSg SINE Alu -11 299 1 187 300 17 0 chr9 35158459 35158519 -107112925 - L3 LINE CR1 -11 1566 1506 273 305 12 0 chr9 35159199 35159281 -107112163 + L2 LINE L2 3150 3232 -40 369 221 42 11 chr9 35159289 35159384 -107112060 - L2 LINE L2 -4 3309 3212 1140 220 90 43 chr9 35159408 35159646 -107111798 - MER21B LTR ERV1 -54 809 583 1660 179 123 0 chr9 35159646 35159971 -107111473 - MLT1A1 LTR MaLR 0 365 1 1140 220 90 43 chr9 35159971 35160300 -107111144 - MER21B LTR ERV1 -280 583 148 361 235 15 0 chr9 35160401 35160469 -107110975 - MER21B LTR ERV1 -773 90 22 2079 111 9 25 chr9 35160470 35160785 -107110659 - AluSx SINE Alu -2 310 1 1426 87 11 0 chr9 35161347 35161532 -107109912 + AluSq SINE Alu 117 303 -10 2064 115 3 3 chr9 35161544 35161831 -107109613 + AluSg SINE Alu 3 289 -21 1834 162 44 3 chr9 35161836 35162176 -107109268 + L1MC3 LINE L1 7432 7785 0 23 0 0 0 chr9 35162280 35162303 -107109141 + AT_rich Low_complexity Low_complexity 1 23 0 24 85 0 0 chr9 35162315 35162374 -107109070 + AT_rich Low_complexity Low_complexity 1 59 0 202 271 49 41 chr9 35163171 35163293 -107108151 + L2 LINE L2 2360 2482 -832 215 258 0 16 chr9 35163497 35163559 -107107885 + MIR SINE MIR 168 228 -34 2371 76 7 3 chr9 35163792 35164093 -107107351 + AluSp SINE Alu 1 302 -11 368 213 12 88 chr9 35164173 35164333 -107107111 + L1MC/D LINE L1 4465 4612 -1534 801 161 23 0 chr9 35164485 35164615 -107106829 + FLAM_C SINE Alu 1 133 -10 714 189 15 15 chr9 35164790 35164922 -107106522 + FLAM_A SINE Alu 2 133 0 510 266 225 15 chr9 35165202 35165597 -107105847 + L1MC/D LINE L1 5313 5790 -2018 1667 163 46 0 chr9 35165784 35166067 -107105377 - AluJb SINE Alu -10 302 7 210 302 7 86 chr9 35166106 35166166 -107105278 + L2 LINE L2 3136 3199 -73 2039 110 7 20 chr9 35166166 35166467 -107104977 - AluSx SINE Alu -15 297 1 210 302 7 86 chr9 35166467 35166545 -107104899 + L2 LINE L2 3199 3263 -9 209 339 43 26 chr9 35166912 35167027 -107104417 + L2 LINE L2 2967 3083 -189 677 192 15 0 chr9 35167126 35167256 -107104188 - AluSq/x SINE Alu -180 133 2 275 100 0 25 chr9 35169661 35169701 -107101743 + U2 snRNA snRNA 1 39 -149 2249 101 3 22 chr9 35170084 35170402 -107101042 - AluSp SINE Alu -1 312 1 2014 99 17 10 chr9 35170517 35170811 -107100633 + AluSq SINE Alu 1 296 -17 1332 99 0 11 chr9 35170813 35170995 -107100449 + AluSg/x SINE Alu 126 305 -5 731 213 109 11 chr9 35172056 35172230 -107099214 - MER3 DNA MER1_type -17 192 2 216 0 0 0 chr9 35172945 35172969 -107098475 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2222 89 3 10 chr9 35174166 35174459 -107096985 - AluSq SINE Alu -22 291 1 2035 141 13 10 chr9 35174489 35174793 -107096651 - AluSx SINE Alu -7 305 1 720 181 101 70 chr9 35175445 35175644 -107095800 + MER6B DNA MER2_type 2 206 -4 454 264 89 35 chr9 35175774 35176032 -107095412 + L1MC5 LINE L1 7642 7913 -48 1501 149 69 29 chr9 35176484 35176759 -107094685 + AluJb SINE Alu 4 289 -23 25 31 0 0 chr9 35176767 35176799 -107094645 + AT_rich Low_complexity Low_complexity 1 32 0 310 315 24 39 chr9 35176994 35177121 -107094323 - MIR SINE MIR -131 131 7 349 130 19 0 chr9 35177933 35177987 -107093457 + FRAM/FAM SINE Alu 14 68 -107 565 168 99 0 chr9 35177987 35178088 -107093356 + AluJo/FRAM SINE Alu 156 266 -46 22 0 0 0 chr9 35178100 35178122 -107093322 + AT_rich Low_complexity Low_complexity 1 22 0 1518 126 146 0 chr9 35178188 35178434 -107093010 + AluSq SINE Alu 11 292 -21 2221 114 3 0 chr9 35178524 35178831 -107092613 - AluSq SINE Alu -5 308 1 1911 123 4 4 chr9 35179045 35179306 -107092138 - AluSx SINE Alu -51 261 1 890 125 0 28 chr9 35180251 35180395 -107091049 + FLAM_C SINE Alu 1 140 -3 1997 156 0 0 chr9 35180474 35180763 -107090681 + AluJb SINE Alu 13 301 -11 1946 122 36 33 chr9 35181061 35181365 -107090079 - AluSx SINE Alu -7 305 1 204 40 0 0 chr9 35182599 35182624 -107088820 + (TA)n Simple_repeat Simple_repeat 2 26 0 1958 120 23 32 chr9 35183462 35183771 -107087673 + AluSx SINE Alu 1 306 -6 1762 178 159 70 chr9 35183833 35184034 -107087410 + L1MB4 LINE L1 5406 5588 -592 1268 182 134 19 chr9 35184034 35184341 -107087103 - MER2 DNA MER2_type -1 343 2 1762 178 159 70 chr9 35184341 35184368 -107087076 + L1MB4 LINE L1 5588 5611 -569 2272 108 7 0 chr9 35184368 35184673 -107086771 + AluSq SINE Alu 1 307 -6 1762 178 159 70 chr9 35184673 35185155 -107086289 + L1MB4 LINE L1 5611 6180 0 530 29 116 0 chr9 35185189 35185258 -107086186 + MADE1 DNA Mariner 4 80 0 559 160 208 7 chr9 35185646 35185790 -107085654 - MER5B DNA MER1_type -3 175 3 2261 100 3 0 chr9 35185896 35186195 -107085249 - AluSg SINE Alu -10 300 1 332 150 33 0 chr9 35186491 35186551 -107084893 - MER5A DNA MER1_type -60 129 68 189 0 0 0 chr9 35187055 35187076 -107084368 + (A)n Simple_repeat Simple_repeat 1 21 0 2271 111 0 0 chr9 35188625 35188923 -107082521 + AluSx SINE Alu 1 298 -14 189 0 0 0 chr9 35189646 35189667 -107081777 + (A)n Simple_repeat Simple_repeat 1 21 0 2326 87 3 10 chr9 35189671 35189970 -107081474 + AluSx SINE Alu 1 297 -15 2103 112 0 14 chr9 35190638 35190948 -107080496 + AluSx SINE Alu 1 306 0 345 173 68 0 chr9 35190950 35191019 -107080425 + MLT1J2 LTR MaLR 366 440 -6 668 172 0 63 chr9 35191759 35191911 -107079533 + L1MD2 LINE L1 5855 5998 -173 4670 178 62 15 chr9 35191916 35192714 -107078730 + L1MC1 LINE L1 4362 5121 -1212 1765 171 55 0 chr9 35192714 35192830 -107078614 + AluJo SINE Alu 1 109 -203 216 0 0 0 chr9 35192830 35192854 -107078590 + (CA)n Simple_repeat Simple_repeat 1 24 0 1765 171 55 0 chr9 35192854 35193030 -107078414 + AluJo SINE Alu 109 309 -3 4670 178 62 15 chr9 35193030 35193590 -107077854 + L1MC1 LINE L1 5121 5653 -680 21 0 0 0 chr9 35193590 35193611 -107077833 + AT_rich Low_complexity Low_complexity 1 21 0 2191 103 0 0 chr9 35193611 35193902 -107077542 + AluSg SINE Alu 1 291 -19 2872 13 0 0 chr9 35193905 35194213 -107077231 + AluY SINE Alu 1 308 -3 4670 178 62 15 chr9 35194213 35194558 -107076886 + L1MC1 LINE L1 5654 6173 -160 2742 163 38 10 chr9 35194214 35194717 -107076727 + L1MC1 LINE L1 5817 6333 0 1129 206 57 114 chr9 35194722 35194838 -107076606 + L1MD2 LINE L1 5945 6066 -293 1877 65 146 0 chr9 35194838 35195099 -107076345 + AluSp SINE Alu 1 299 -4 1129 206 57 114 chr9 35195099 35195420 -107076024 + L1MD2 LINE L1 6066 6357 -2 1212 207 79 30 chr9 35196522 35196851 -107074593 + MER2 DNA MER2_type 1 345 0 829 165 0 0 chr9 35197068 35197195 -107074249 + FLAM_C SINE Alu 1 127 -16 613 191 14 71 chr9 35197240 35197381 -107074063 - FLAM_A SINE Alu 0 133 1 318 282 73 9 chr9 35197399 35197509 -107073935 - MER5B DNA MER1_type -61 117 1 192 125 0 0 chr9 35198219 35198251 -107073193 + (TA)n Simple_repeat Simple_repeat 2 33 0 910 189 0 0 chr9 35198259 35198407 -107073037 - FRAM SINE Alu -29 147 1 258 286 134 0 chr9 35199397 35199516 -107071928 + L1ME4a LINE L1 5857 5991 -130 193 330 57 16 chr9 35200399 35200497 -107070947 + MIR SINE MIR 5 110 -98 21 71 0 0 chr9 35200957 35200999 -107070445 + AT_rich Low_complexity Low_complexity 1 42 0 260 177 71 88 chr9 35201237 35201350 -107070094 - L1ME4a LINE L1 -1 6120 6010 1904 181 0 0 chr9 35201382 35201680 -107069764 - AluSx SINE Alu -12 300 3 340 171 72 155 chr9 35201960 35202153 -107069291 + L1MC4a LINE L1 5257 5433 -2375 267 211 227 13 chr9 35202161 35202313 -107069131 + L1MC4a LINE L1 5725 5813 -308 999 87 0 0 chr9 35202529 35202655 -107068789 + AluSp/q SINE Alu 157 282 -31 1628 95 0 27 chr9 35202755 35202976 -107068468 - AluSq SINE Alu -98 215 1 1229 211 40 46 chr9 35203080 35203383 -107068061 - AluJo SINE Alu -11 301 1 38 0 0 0 chr9 35204631 35204669 -107066775 + AT_rich Low_complexity Low_complexity 1 38 0 191 254 0 70 chr9 35205027 35205098 -107066346 + L2 LINE L2 3207 3272 0 266 242 11 22 chr9 35205504 35205595 -107065849 - L1ME4a LINE L1 -62 6059 5970 762 249 91 56 chr9 35205603 35205977 -107065467 - L1ME4a LINE L1 -178 5943 5557 2274 96 7 3 chr9 35206144 35206436 -107065008 + AluSx SINE Alu 1 293 -19 2111 141 3 32 chr9 35206583 35206930 -107064514 + MER1B DNA MER1_type 1 337 0 272 216 144 46 chr9 35206937 35207090 -107064354 - L1ME4a LINE L1 -2336 5472 5305 765 146 46 15 chr9 35207171 35207301 -107064143 - FRAM SINE Alu -18 158 25 2262 114 0 7 chr9 35207800 35208107 -107063337 - AluSx SINE Alu -7 305 1 360 294 142 14 chr9 35208115 35208333 -107063111 + L2 LINE L2 2151 2396 -918 883 282 76 76 chr9 35208450 35209148 -107062296 + HAL1 LINE L1 26 723 -1784 522 269 117 43 chr9 35209380 35209472 -107061972 + HAL1 LINE L1 1638 1722 -785 390 149 246 79 chr9 35209472 35209586 -107061858 + FLAM_C SINE Alu 1 133 0 2497 71 0 0 chr9 35209590 35209885 -107061559 + AluSc SINE Alu 1 295 -14 522 269 117 43 chr9 35209885 35210044 -107061400 + HAL1 LINE L1 1724 1913 -594 521 278 102 43 chr9 35210086 35210460 -107060984 + HAL1 LINE L1 1989 2384 -123 2374 96 0 0 chr9 35210561 35210863 -107060581 - AluSq SINE Alu -11 302 1 302 241 38 0 chr9 35211171 35211250 -107060194 - MIR SINE MIR -129 133 52 320 323 81 0 chr9 35211250 35211374 -107060070 - MER94 DNA DNA 0 134 1 190 154 51 0 chr9 35211381 35211420 -107060024 - MIR SINE MIR -220 42 2 1709 194 14 0 chr9 35211575 35211869 -107059575 - AluJo SINE Alu -14 298 1 6621 97 43 23 chr9 35212531 35212583 -107058861 + L1MA3 LINE L1 5218 5268 -1037 1945 142 0 3 chr9 35212583 35212897 -107058547 + AluSq SINE Alu 1 313 0 6621 97 43 23 chr9 35212897 35212908 -107058536 + L1MA3 LINE L1 5268 5277 -1028 1842 146 4 0 chr9 35212908 35213176 -107058268 + AluSx SINE Alu 1 269 -43 210 37 0 0 chr9 35213183 35213210 -107058234 + (CAA)n Simple_repeat Simple_repeat 1 27 0 6621 97 43 23 chr9 35213210 35214218 -107057226 + L1MA3 LINE L1 5282 6298 -7 1960 143 3 10 chr9 35215120 35215414 -107056030 + AluSx SINE Alu 5 296 -16 2273 100 10 0 chr9 35215616 35215915 -107055529 + AluSx SINE Alu 3 304 -8 290 303 54 76 chr9 35216009 35216194 -107055250 + MER21B LTR ERV1 17 197 -666 1546 195 3 3 chr9 35216194 35216476 -107054968 + AluJb SINE Alu 16 297 -15 575 186 17 17 chr9 35217249 35217367 -107054077 + FLAM_C SINE Alu 5 122 -21 1528 210 0 35 chr9 35217381 35217695 -107053749 + AluJb SINE Alu 1 303 -9 340 252 244 0 chr9 35217695 35217818 -107053626 - MIR SINE MIR -92 170 18 1800 160 13 13 chr9 35217837 35218137 -107053307 - AluJb SINE Alu -12 300 1 2481 54 0 3 chr9 35218159 35218453 -107052991 + AluY SINE Alu 1 293 -18 2461 52 16 3 chr9 35219931 35220236 -107051208 + AluSp SINE Alu 1 309 -4 1586 97 13 13 chr9 35220348 35220574 -107050870 + AluSq SINE Alu 75 300 -13 318 18 36 36 chr9 35220596 35220652 -107050792 + (GAAAA)n Simple_repeat Simple_repeat 4 59 0 2172 92 0 14 chr9 35220675 35220968 -107050476 - AluSg SINE Alu -21 289 1 822 193 0 0 chr9 35221127 35221277 -107050167 - AluJb SINE Alu -23 289 140 1992 103 4 4 chr9 35221435 35221706 -107049738 + AluSx SINE Alu 1 271 -41 203 0 0 36 chr9 35221715 35221743 -107049701 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 785 203 92 57 chr9 35222264 35222454 -107048990 + MER20B DNA MER1_type 488 693 -90 1986 107 4 0 chr9 35222454 35222717 -107048727 - AluSx SINE Alu -14 298 35 785 203 92 57 chr9 35222717 35222807 -107048637 + MER20B DNA MER1_type 693 778 -5 830 196 5 15 chr9 35222839 35223038 -107048406 + HAL1b LINE L1 927 1123 -225 1840 155 23 10 chr9 35223048 35223352 -107048092 + AluJo SINE Alu 1 308 -4 2144 110 0 10 chr9 35223360 35223651 -107047793 + AluSg SINE Alu 1 288 -22 24 0 0 0 chr9 35223651 35223675 -107047769 + AT_rich Low_complexity Low_complexity 1 24 0 326 214 57 0 chr9 35224804 35224874 -107046570 + MIR SINE MIR 174 247 -15 318 50 0 0 chr9 35224878 35224918 -107046526 + (TTG)n Simple_repeat Simple_repeat 3 42 0 753 164 0 0 chr9 35224918 35225034 -107046410 - FLAM_C SINE Alu -26 117 2 2336 58 0 7 chr9 35226488 35226780 -107044664 + L1PA5 LINE L1 5865 6154 0 2009 111 0 0 chr9 35227077 35227338 -107044106 + AluSq SINE Alu 1 261 -52 681 252 70 42 chr9 35227493 35227779 -107043665 + L2 LINE L2 1654 1947 -1367 2490 73 3 0 chr9 35228033 35228333 -107043111 + AluY SINE Alu 1 301 -10 1289 110 6 0 chr9 35228333 35228506 -107042938 + AluSq SINE Alu 134 307 -6 41978 66 7 2 chr9 35228518 35234632 -107036812 + L1PA5 LINE L1 11 6154 0 408 299 130 23 chr9 35234750 35235104 -107036340 + L1MC5 LINE L1 639 1008 -5197 570 241 13 44 chr9 35235106 35235264 -107036180 + Tigger1 DNA MER2_type 1 153 -2265 296 187 0 27 chr9 35235288 35235363 -107036081 + CT-rich Low_complexity Low_complexity 6 78 0 1038 151 0 0 chr9 35235365 35235517 -107035927 - FRAM SINE Alu -18 158 7 1155 152 30 5 chr9 35235522 35235720 -107035724 + Tigger1 DNA MER2_type 2216 2418 0 885 247 55 61 chr9 35235745 35236507 -107034937 + L1MC5 LINE L1 1072 1837 -6193 2373 70 7 10 chr9 35236507 35236805 -107034639 - AluSq SINE Alu -16 297 1 885 247 55 61 chr9 35236805 35236989 -107034455 + L1MC5 LINE L1 1837 7995 -35 234 191 0 48 chr9 35236975 35237038 -107034406 + L1MEd LINE L1 1608 1667 -4729 * 2592 41 0 0 chr9 35237196 35237490 -107033954 + AluY SINE Alu 1 294 -17 369 299 83 22 chr9 35237559 35237873 -107033571 + L1MEd LINE L1 1860 2192 -4204 491 289 69 26 chr9 35237886 35238118 -107033326 + L2 LINE L2 1662 1903 -1411 307 245 61 63 chr9 35238133 35238158 -107033286 + L1MEd LINE L1 2183 2207 -4008 2360 90 3 3 chr9 35238158 35238458 -107032986 + AluSg SINE Alu 1 300 -10 307 245 61 63 chr9 35238458 35238617 -107032827 + L1MEd LINE L1 2207 2332 -3883 362 145 0 14 chr9 35238729 35238798 -107032646 + (TA)n Simple_repeat Simple_repeat 1 68 0 337 187 0 13 chr9 35238822 35238897 -107032547 - L1MB7 LINE L1 -52 6132 6059 2190 118 0 3 chr9 35238924 35239229 -107032215 - AluSx SINE Alu -8 304 1 401 272 4 52 chr9 35239247 35239415 -107032029 + L1MEd LINE L1 2498 2652 -3563 2539 80 0 0 chr9 35239415 35239726 -107031718 + AluY SINE Alu 1 311 0 401 272 4 52 chr9 35239726 35239807 -107031637 + L1MEd LINE L1 2652 2735 -3480 665 176 0 9 chr9 35239823 35239931 -107031513 + MER44D DNA MER2_type 3 379 -230 936 95 0 0 chr9 35239932 35240048 -107031396 - AluSq/x SINE Alu -187 126 11 804 168 7 21 chr9 35240058 35240201 -107031243 - FRAM SINE Alu -14 162 22 2087 234 106 91 chr9 35240287 35240686 -107030758 + L1M4 LINE L1 3657 4048 -2098 2412 84 0 7 chr9 35240686 35240984 -107030460 - AluSp SINE Alu -17 296 1 2087 234 106 91 chr9 35240984 35241173 -107030271 + L1M4 LINE L1 4048 4233 -1913 2260 116 0 0 chr9 35241173 35241474 -107029970 - AluSx SINE Alu -11 301 1 2087 234 106 91 chr9 35241474 35241674 -107029770 + L1M4 LINE L1 4233 4428 -1718 1857 174 0 3 chr9 35241674 35241979 -107029465 + AluJb SINE Alu 1 304 -8 2087 234 106 91 chr9 35241979 35242459 -107028985 + L1M4 LINE L1 4428 4947 -1199 1144 102 0 0 chr9 35242538 35242685 -107028759 - AluSq/x SINE Alu -166 147 1 180 256 0 23 chr9 35242697 35242740 -107028704 - MIR SINE MIR -204 58 17 4152 122 3 35 chr9 35243550 35244059 -107027385 - MER41B LTR ERV1 0 635 150 2345 92 14 0 chr9 35244059 35244354 -107027090 - AluSq SINE Alu -14 299 1 4152 122 3 35 chr9 35244354 35244500 -107026944 - MER41B LTR ERV1 -485 150 1 350 175 155 19 chr9 35245879 35245982 -107025462 + MIR SINE MIR 23 139 -69 553 306 69 14 chr9 35246989 35247234 -107024210 - L1MC4a LINE L1 -297 5824 5594 2146 117 7 19 chr9 35247953 35248261 -107023183 - AluSx SINE Alu -8 304 1 2311 89 7 7 chr9 35248275 35248577 -107022867 - AluSp SINE Alu -11 302 1 3102 177 41 34 chr9 35248643 35249388 -107022056 - L1MB3 LINE L1 -58 6125 5415 207 171 0 0 chr9 35249807 35249842 -107021602 + GA-rich Low_complexity Low_complexity 1 35 0 201 254 0 14 chr9 35249957 35250028 -107021416 - MIR SINE MIR -132 130 61 574 179 24 41 chr9 35251240 35251363 -107020081 - MIR SINE MIR -10 252 132 982 177 143 55 chr9 35251367 35251604 -107019840 + AluJo SINE Alu 43 300 -12 459 202 91 0 chr9 35251614 35251713 -107019731 - MIR SINE MIR -120 142 35 343 265 10 0 chr9 35251731 35251833 -107019611 + (TG)n Simple_repeat Simple_repeat 2 104 0 431 243 9 19 chr9 35251934 35252041 -107019403 + MER21B LTR ERV1 1 106 -757 3767 189 46 45 chr9 35252099 35252664 -107018780 + MER21B LTR ERV1 19 587 -276 507 261 25 0 chr9 35252664 35252783 -107018661 + FLAM_A SINE Alu 1 122 -11 3767 189 46 45 chr9 35252783 35253058 -107018386 + MER21B LTR ERV1 587 860 -3 348 254 122 6 chr9 35253526 35253675 -107017769 - MIR SINE MIR -5 257 90 264 77 0 0 chr9 35254390 35254429 -107017015 + (A)n Simple_repeat Simple_repeat 1 39 0 266 314 42 0 chr9 35258619 35258737 -107012707 + L1MC5 LINE L1 7805 7927 -34 2191 85 29 0 chr9 35259370 35259651 -107011793 - AluSc SINE Alu -10 299 11 2344 100 7 7 chr9 35259661 35259962 -107011482 - AluSx SINE Alu -11 301 1 1740 152 22 51 chr9 35261520 35261835 -107009609 + AluJo SINE Alu 4 309 -3 2399 103 0 0 chr9 35262000 35262301 -107009143 - AluSx SINE Alu -11 301 1 1949 159 3 0 chr9 35262574 35262870 -107008574 + AluJo SINE Alu 1 297 -15 1880 171 3 0 chr9 35263042 35263346 -107008098 + AluJb SINE Alu 1 305 -7 608 208 47 57 chr9 35263902 35264113 -107007331 + L1MC/D LINE L1 5612 5822 -511 1814 134 14 38 chr9 35264496 35264786 -107006658 - AluSx SINE Alu -6 306 24 381 236 130 24 chr9 35264793 35264916 -107006528 + L2 LINE L2 3167 3302 -11 198 0 0 0 chr9 35264922 35264944 -107006500 + (TGAA)n Simple_repeat Simple_repeat 1 22 0 1599 152 53 8 chr9 35265376 35265640 -107005804 + AluJb SINE Alu 1 276 -36 210 37 0 0 chr9 35265647 35265674 -107005770 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1098 68 8 0 chr9 35266002 35266134 -107005310 + AluSq/x SINE Alu 1 133 -179 2401 89 3 0 chr9 35266137 35266441 -107005003 + AluSx SINE Alu 2 306 -6 298 267 58 0 chr9 35267512 35267598 -107003846 + MIR SINE MIR 56 146 -116 472 146 49 12 chr9 35267694 35267776 -107003668 + AluJb SINE Alu 203 287 -25 217 200 25 0 chr9 35268620 35268660 -107002784 - L2 LINE L2 -665 2649 2609 719 209 0 22 chr9 35269584 35269718 -107001726 - FLAM_A SINE Alu -2 131 1 2403 57 0 7 chr9 35270079 35270402 -107001042 - AluY SINE Alu 0 321 1 779 280 13 59 chr9 35270581 35270970 -107000474 + L1ME4a LINE L1 5561 5931 -190 209 289 0 0 chr9 35271178 35271223 -107000221 + (TGG)n Simple_repeat Simple_repeat 2 46 0 180 0 0 0 chr9 35271236 35271256 -107000188 + (TC)n Simple_repeat Simple_repeat 2 21 0 467 248 38 15 chr9 35274153 35274286 -106997158 - MIR SINE MIR -126 136 1 327 281 97 0 chr9 35274337 35274451 -106996993 + MIR SINE MIR 21 145 -117 258 156 0 0 chr9 35274713 35274758 -106996686 + (TG)n Simple_repeat Simple_repeat 1 45 0 224 291 12 12 chr9 35275221 35275307 -106996137 + A-rich Low_complexity Low_complexity 1 86 0 261 287 128 0 chr9 35275538 35275632 -106995812 - MER103 DNA DNA -48 118 13 207 0 0 0 chr9 35276028 35276051 -106995393 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2380 81 0 0 chr9 35276053 35276337 -106995107 - AluSx SINE Alu -23 289 6 498 331 60 36 chr9 35276342 35276623 -106994821 - L3 LINE CR1 -1041 536 249 226 208 0 38 chr9 35278751 35278804 -106992640 - MER81 DNA DNA -62 52 2 258 301 0 106 chr9 35278902 35279015 -106992429 + MIR SINE MIR 21 121 -87 399 41 0 0 chr9 35279030 35279079 -106992365 + (TG)n Simple_repeat Simple_repeat 1 49 0 506 279 65 0 chr9 35279656 35279810 -106991634 - MER103 DNA DNA -1 165 2 228 360 110 15 chr9 35280716 35280852 -106990592 - MER5A DNA MER1_type -1 188 40 404 236 24 97 chr9 35281353 35281518 -106989926 + MIR3 SINE MIR 23 175 -33 183 263 177 70 chr9 35281767 35282083 -106989361 + L2 LINE L2 2142 2491 -823 222 211 0 0 chr9 35282083 35282135 -106989309 + (CA)n Simple_repeat Simple_repeat 2 53 0 203 260 96 87 chr9 35282277 35282381 -106989063 - L2 LINE L2 -9 3263 3159 29 0 0 0 chr9 35283617 35283646 -106987798 + AT_rich Low_complexity Low_complexity 1 29 0 197 313 50 0 chr9 35284112 35284192 -106987252 + L2 LINE L2 2979 3062 -210 2058 107 16 55 chr9 35284362 35284672 -106986772 + AluSx SINE Alu 1 298 -14 2478 89 0 0 chr9 35285117 35285420 -106986024 - AluSc SINE Alu -6 303 1 800 172 146 0 chr9 35285750 35285901 -106985543 - FRAM SINE Alu -6 170 1 2379 117 0 0 chr9 35286002 35286311 -106985133 + AluSx SINE Alu 1 309 -3 506 281 26 42 chr9 35286634 35286826 -106984618 - MER5A DNA MER1_type 0 189 1 1668 152 23 43 chr9 35287021 35287323 -106984121 - AluJo SINE Alu -16 296 1 2272 97 0 19 chr9 35287367 35287677 -106983767 - AluSg SINE Alu -6 304 1 2332 114 0 22 chr9 35289823 35290140 -106981304 - AluSx SINE Alu -2 310 1 188 321 0 0 chr9 35290282 35290338 -106981106 + L2 LINE L2 3258 3313 0 2006 138 20 0 chr9 35290382 35290686 -106980758 - AluSx SINE Alu -2 310 1 1457 185 8 20 chr9 35290931 35291185 -106980259 + AluJo SINE Alu 42 292 -20 668 282 48 40 chr9 35291189 35291572 -106979872 + L1ME1 LINE L1 5192 5585 -585 229 351 27 21 chr9 35291610 35291798 -106979646 + L1ME1 LINE L1 5678 5866 -304 3739 189 48 115 chr9 35291803 35292410 -106979034 + L1MC4 LINE L1 6760 7406 -636 2016 150 6 19 chr9 35292410 35292724 -106978720 - AluSx SINE Alu -2 310 1 3739 189 48 115 chr9 35292724 35293373 -106978071 + L1MC4 LINE L1 7406 8097 55 297 0 0 0 chr9 35293373 35293406 -106978038 + (CA)n Simple_repeat Simple_repeat 2 34 0 192 40 0 0 chr9 35293405 35293430 -106978014 + (GA)n Simple_repeat Simple_repeat 2 26 0 * 3739 189 48 115 chr9 35293406 35293539 -106977905 + L1MC4 LINE L1 8096 8035 -7 23 0 0 0 chr9 35293540 35293563 -106977881 + AT_rich Low_complexity Low_complexity 1 23 0 941 238 57 5 chr9 35293619 35293886 -106977558 + L1ME1 LINE L1 5889 6147 -19 207 146 0 0 chr9 35294104 35294145 -106977299 + (GGAA)n Simple_repeat Simple_repeat 1 41 0 207 318 127 16 chr9 35294678 35294804 -106976640 + MIR SINE MIR 117 256 -6 584 274 100 53 chr9 35295038 35295175 -106976269 + L1ME LINE L1 5027 5156 -990 2023 106 51 0 chr9 35295175 35295449 -106975995 + AluSx SINE Alu 1 288 -24 549 0 0 0 chr9 35295449 35295510 -106975934 + (CATAA)n Simple_repeat Simple_repeat 2 62 0 584 274 100 53 chr9 35295510 35295731 -106975713 + L1ME LINE L1 5155 5391 -755 451 256 72 84 chr9 35295698 35295734 -106975710 + L1ME4a LINE L1 5313 5348 -825 * 2030 149 10 0 chr9 35295734 35296029 -106975415 + AluSx SINE Alu 1 298 -14 451 256 72 84 chr9 35296029 35296057 -106975387 + L1ME4a LINE L1 5348 5375 -798 793 143 0 50 chr9 35296057 35296197 -106975247 + FLAM_A SINE Alu 1 133 0 451 256 72 84 chr9 35296197 35296406 -106975038 + L1ME4a LINE L1 5375 5595 -578 3204 175 57 136 chr9 35296427 35297644 -106973800 + L1M4 LINE L1 3040 4160 -1986 1233 118 133 0 chr9 35297881 35298084 -106973360 - MER30 DNA MER1_type 0 230 1 447 313 18 37 chr9 35298252 35298415 -106973029 - MIR3 SINE MIR -15 193 34 2088 99 0 0 chr9 35299291 35299573 -106971871 - AluSx SINE Alu -30 282 1 454 83 0 62 chr9 35300203 35300299 -106971145 + (CA)n Simple_repeat Simple_repeat 2 91 0 360 316 30 18 chr9 35300405 35300573 -106970871 + L1ME LINE L1 5558 5727 -394 677 205 87 22 chr9 35300919 35301104 -106970340 - MIR SINE MIR 0 262 66 232 346 57 6 chr9 35301281 35301440 -106970004 - MIR3 SINE MIR -6 202 36 274 312 114 53 chr9 35303318 35303626 -106967818 + L1ME4a LINE L1 5630 5975 -146 1933 128 20 3 chr9 35303626 35303922 -106967522 + AluJb SINE Alu 3 303 -9 274 312 114 53 chr9 35303922 35304062 -106967382 + L1ME4a LINE L1 5975 6105 -16 225 0 0 0 chr9 35304161 35304186 -106967258 + (TC)n Simple_repeat Simple_repeat 2 26 0 209 194 0 0 chr9 35305404 35305440 -106966004 + GA-rich Low_complexity Low_complexity 2 37 0 244 342 83 8 chr9 35305492 35305612 -106965832 + L2 LINE L2 3126 3254 -18 1863 104 47 24 chr9 35308110 35308407 -106963037 - AluSx SINE Alu -8 304 1 252 341 65 8 chr9 35308434 35308557 -106962887 - MIR SINE MIR -70 192 63 247 203 176 68 chr9 35309266 35309414 -106962030 - MIR SINE MIR -13 249 86 21 0 0 0 chr9 35310358 35310379 -106961065 + GC_rich Low_complexity Low_complexity 1 21 0 263 194 29 80 chr9 35310471 35310646 -106960798 + (CGGGG)n Simple_repeat Simple_repeat 4 169 0 243 273 127 18 chr9 35311267 35311377 -106960067 - MIR SINE MIR -92 170 49 232 250 19 0 chr9 35311644 35311696 -106959748 - MIR SINE MIR -93 169 117 1682 269 166 16 chr9 35311734 35312658 -106958786 + L2 LINE L2 2003 3135 -178 2286 80 3 3 chr9 35312658 35312960 -106958484 - AluSq SINE Alu -11 302 1 1682 269 166 16 chr9 35312960 35313107 -106958337 + L2 LINE L2 3135 3259 -54 2372 70 0 3 chr9 35313108 35313409 -106958035 - AluY SINE Alu -11 300 1 946 264 174 62 chr9 35314256 35314693 -106956751 - MLT1G1 LTR MaLR 0 595 100 1612 199 0 0 chr9 35314693 35314994 -106956450 - AluJo SINE Alu -11 301 1 946 264 174 62 chr9 35314994 35315026 -106956418 - MLT1G1 LTR MaLR -495 100 73 406 150 38 184 chr9 35315184 35315383 -106956061 - LTR45B LTR ERV1 0 525 319 230 277 40 10 chr9 35315472 35315573 -106955871 - MER72 LTR ERV1 -247 475 372 708 160 109 0 chr9 35315793 35315912 -106955532 + FLAM_C SINE Alu 2 133 0 1681 218 72 47 chr9 35316239 35316261 -106955183 + L1MC4a LINE L1 6444 6464 -1344 2174 101 0 3 chr9 35316261 35316569 -106954875 + AluSx SINE Alu 1 307 -5 1681 218 72 47 chr9 35316569 35316731 -106954713 + L1MC4a LINE L1 6464 6620 -1188 360 0 0 0 chr9 35316731 35316771 -106954673 + (TG)n Simple_repeat Simple_repeat 2 41 0 1681 218 72 47 chr9 35316771 35317123 -106954321 + L1MC4a LINE L1 6620 6995 -813 404 169 53 43 chr9 35317161 35317294 -106954150 + L1MC4 LINE L1 7382 7473 -312 2113 109 0 0 chr9 35317508 35317792 -106953652 + AluSx SINE Alu 3 286 -26 2257 102 0 9 chr9 35317813 35318128 -106953316 + AluSx SINE Alu 1 312 0 279 0 0 0 chr9 35318130 35318161 -106953283 + (TA)n Simple_repeat Simple_repeat 2 32 0 1658 184 10 7 chr9 35318169 35318478 -106952966 + AluJo SINE Alu 1 310 -2 566 249 127 0 chr9 35318479 35318644 -106952800 + L1MC4 LINE L1 7701 7886 -156 1904 128 21 107 chr9 35318650 35319025 -106952419 + MER7A DNA MER2_type 6 346 0 2002 130 53 0 chr9 35319658 35319981 -106951463 + L1PA16 LINE L1 5807 6146 -20 238 261 0 15 chr9 35320471 35320536 -106950908 - MLT1G1-int LTR MaLR -1303 68 5 1030 249 14 0 chr9 35320556 35320777 -106950667 + MER58A DNA MER1_type 1 224 0 1028 265 124 43 chr9 35320806 35321126 -106950318 - MLT1G1 LTR MaLR -24 531 156 1927 141 0 7 chr9 35321126 35321431 -106950013 - AluJb SINE Alu -9 303 1 1028 265 124 43 chr9 35321431 35321601 -106949843 - MLT1G1 LTR MaLR -399 156 1 284 212 91 40 chr9 35321967 35322066 -106949378 - MLT1I LTR MaLR -25 384 281 505 259 169 15 chr9 35322150 35322351 -106949093 - MLT1H LTR MaLR -289 260 29 1066 331 60 50 chr9 35322496 35322695 -106948749 - L3 LINE CR1 -7 1570 1374 1553 196 73 3 chr9 35322695 35323037 -106948407 + MER47A DNA MER2_type 1 366 0 1066 331 60 50 chr9 35323037 35323215 -106948229 - L3 LINE CR1 -203 1374 1199 850 144 8 0 chr9 35323215 35323340 -106948104 - FLAM_A SINE Alu -7 126 1 1066 331 60 50 chr9 35323340 35323560 -106947884 - L3 LINE CR1 -378 1199 966 212 321 60 36 chr9 35323566 35323650 -106947794 - L3 LINE CR1 -931 646 561 370 277 56 90 chr9 35323762 35324029 -106947415 - LTR67 LTR ERVL -297 260 3 368 306 67 50 chr9 35324055 35324235 -106947209 - L3 LINE CR1 -1052 525 343 1701 165 0 14 chr9 35324277 35324562 -106946882 + AluJo SINE Alu 1 281 -31 333 0 0 0 chr9 35324563 35324600 -106946844 + (CA)n Simple_repeat Simple_repeat 2 38 0 579 269 110 57 chr9 35324673 35324937 -106946507 + MLT1K LTR MaLR 40 317 -271 720 166 35 28 chr9 35324951 35325096 -106946348 - MLT1B LTR MaLR 0 390 245 552 142 28 75 chr9 35325135 35325241 -106946203 - AluJo SINE Alu -127 185 85 1338 186 66 30 chr9 35325245 35325578 -106945866 - MLT1C LTR MaLR -122 345 1 396 224 69 46 chr9 35325969 35326143 -106945301 - L1MC5 LINE L1 -35 7926 7749 1431 192 19 26 chr9 35326144 35326410 -106945034 + Tigger7 DNA MER2_type 1 264 -2223 4458 18 4 0 chr9 35326427 35326935 -106944509 + L1PA3 LINE L1 5646 6155 0 3127 62 2 5 chr9 35326935 35327320 -106944124 + L1PA7 LINE L1 5754 6153 -1 186 43 0 0 chr9 35327359 35327382 -106944062 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 315 0 0 0 chr9 35327393 35327428 -106944016 + (CA)n Simple_repeat Simple_repeat 2 36 0 525 165 10 21 chr9 35327428 35327525 -106943919 + Tigger7 DNA MER2_type 2492 2587 0 226 250 45 0 chr9 35327654 35327698 -106943746 - L2 LINE L2 -86 3186 3141 372 263 286 0 chr9 35327727 35327860 -106943584 - MER5A DNA MER1_type -10 179 9 288 205 14 14 chr9 35328206 35328277 -106943167 + MLT1K LTR MaLR 140 246 -342 1927 135 3 7 chr9 35328607 35328910 -106942534 + AluSx SINE Alu 1 302 -10 491 269 0 0 chr9 35329412 35329520 -106941924 - MER81 DNA DNA -6 108 1 236 235 204 68 chr9 35329688 35329820 -106941624 + MIR SINE MIR 36 185 -77 204 293 53 40 chr9 35332159 35332234 -106939210 - L2 LINE L2 -190 3082 3007 252 262 243 0 chr9 35332672 35332775 -106938669 + L2 LINE L2 3145 3272 0 776 162 7 37 chr9 35333123 35333259 -106938185 - FLAM_A SINE Alu -1 132 1 539 285 135 39 chr9 35333266 35333599 -106937845 - MLT1K LTR MaLR -14 574 210 324 177 102 129 chr9 35333713 35333860 -106937584 - MIR SINE MIR -56 206 64 2263 86 0 0 chr9 35333860 35334152 -106937292 - AluSx SINE Alu -20 292 1 352 313 89 36 chr9 35334517 35334741 -106936703 + L1ME LINE L1 5409 5644 -477 595 261 49 126 chr9 35334749 35334906 -106936538 + L1M4 LINE L1 2197 2365 -3781 2340 67 10 22 chr9 35334906 35335220 -106936224 + AluSp SINE Alu 2 311 -2 595 261 49 126 chr9 35335220 35335515 -106935929 + L1M4 LINE L1 2365 2614 -3532 873 144 7 7 chr9 35335562 35335715 -106935729 + AluJb SINE Alu 1 153 -159 234 300 40 20 chr9 35336336 35336486 -106934958 + L1P LINE L1 4906 5058 -1088 739 192 23 0 chr9 35336961 35337091 -106934353 - FLAM_A SINE Alu 0 133 1 873 152 0 28 chr9 35337208 35337353 -106934091 + AluJb SINE Alu 157 297 -15 1900 94 3 76 chr9 35337382 35337533 -106933911 + AluSc SINE Alu 5 121 -188 2349 75 0 0 chr9 35337533 35337841 -106933603 + AluY SINE Alu 1 308 -3 1900 94 3 76 chr9 35337841 35338018 -106933426 + AluSc SINE Alu 121 309 0 1750 162 20 23 chr9 35338086 35338388 -106933056 + AluJo SINE Alu 1 301 -11 2736 138 115 29 chr9 35338393 35338913 -106932531 + MER34B LTR ERV1 1 565 0 1948 154 0 0 chr9 35339042 35339340 -106932104 + AluJo SINE Alu 1 298 -14 420 273 34 89 chr9 35339378 35339480 -106931964 + L1MEd LINE L1 943 1049 -1441 1733 117 95 0 chr9 35339480 35339753 -106931691 + AluSx SINE Alu 1 299 -13 420 273 34 89 chr9 35339753 35340060 -106931384 + L1MEd LINE L1 1049 1417 -1073 281 301 106 24 chr9 35340565 35340688 -106930756 + MIR3 SINE MIR 13 145 -63 2078 124 61 28 chr9 35340872 35341235 -106930209 + THE1C LTR MaLR 1 375 0 737 218 6 6 chr9 35341642 35341798 -106929646 - MER103 DNA DNA -9 157 2 323 360 124 0 chr9 35341846 35342071 -106929373 - L2 LINE L2 -1025 2289 2037 2313 187 63 33 chr9 35342089 35342139 -106929305 + MLT2B3 LTR ERVL 3 50 -504 2358 72 0 7 chr9 35342139 35342445 -106928999 + AluY SINE Alu 1 304 -7 2313 187 63 33 chr9 35342445 35342885 -106928559 + MLT2B3 LTR ERVL 50 508 -46 1463 154 14 7 chr9 35342895 35343158 -106928286 + MER49 LTR ERV1 1 262 -641 235 222 0 21 chr9 35343142 35343209 -106928235 + MER4D LTR ERV1 107 280 -592 * 1542 228 8 34 chr9 35343237 35343592 -106927852 + MER4D LTR ERV1 558 903 0 313 70 26 0 chr9 35343624 35343676 -106927768 + MLT2B3 LTR ERVL 464 554 0 324 294 183 16 chr9 35343763 35343889 -106927555 + MER5A DNA MER1_type 37 183 -6 752 226 144 82 chr9 35344338 35344475 -106926969 + MLT1J LTR MaLR 20 147 -364 1918 115 0 0 chr9 35344475 35344745 -106926699 + AluY SINE Alu 29 298 -13 752 226 144 82 chr9 35344745 35344926 -106926518 + MLT1J LTR MaLR 147 358 -153 1682 163 10 10 chr9 35344927 35345221 -106926223 + AluJb SINE Alu 1 294 -18 468 307 68 0 chr9 35345242 35345418 -106926026 - L2 LINE L2 -1351 1963 1776 340 356 43 16 chr9 35346886 35346953 -106924491 + MIR SINE MIR 20 84 -178 659 202 0 23 chr9 35346953 35347082 -106924362 - FLAM_A SINE Alu -7 126 1 340 356 43 16 chr9 35347082 35347202 -106924242 + MIR SINE MIR 84 212 -50 425 226 169 8 chr9 35347379 35347503 -106923941 + MER5A DNA MER1_type 39 182 -7 428 263 92 89 chr9 35347851 35348132 -106923312 - MLT1J LTR MaLR 0 511 230 2321 79 31 0 chr9 35348751 35349042 -106922402 - AluY SINE Alu -11 300 1 1983 171 0 7 chr9 35349095 35349399 -106922045 + AluJo SINE Alu 1 302 -10 425 299 45 8 chr9 35349442 35349576 -106921868 + L2 LINE L2 3175 3313 0 213 318 0 56 chr9 35350527 35350593 -106920851 - MIR SINE MIR -65 143 84 2395 155 23 3 chr9 35350593 35350981 -106920463 - MSTD LTR MaLR 0 396 1 213 318 0 56 chr9 35350981 35351021 -106920423 - MIR SINE MIR -124 84 43 487 286 67 28 chr9 35351098 35351222 -106920222 + MLT1J2 LTR MaLR 63 181 -269 2282 107 0 7 chr9 35351222 35351521 -106919923 + AluSx SINE Alu 1 297 -15 487 286 67 28 chr9 35351521 35351749 -106919695 + MLT1J2 LTR MaLR 181 450 0 384 309 140 22 chr9 35351851 35352029 -106919415 + MIR SINE MIR 3 201 -61 661 248 149 14 chr9 35352032 35352314 -106919130 + MER20B DNA MER1_type 1 320 -463 614 237 0 23 chr9 35352319 35352450 -106918994 - FLAM_A SINE Alu -5 128 1 902 217 170 59 chr9 35352654 35353077 -106918367 - MLT1D LTR MaLR -1 389 3 1241 70 0 0 chr9 35353084 35353240 -106918204 - MSTA LTR MaLR 0 428 273 497 175 12 0 chr9 35353240 35353320 -106918124 - AluJb SINE Alu -189 123 43 853 226 81 23 chr9 35353348 35353657 -106917787 - MER20B DNA MER1_type -2 781 455 1730 86 25 0 chr9 35353658 35353902 -106917542 - MSTA LTR MaLR -178 250 1 234 265 0 0 chr9 35354055 35354123 -106917321 - LTR33 LTR ERVL -440 81 14 1136 235 79 37 chr9 35354134 35354400 -106917044 + MER20B DNA MER1_type 334 626 -157 2404 110 3 0 chr9 35354400 35354710 -106916734 - AluSx SINE Alu -1 311 1 1136 235 79 37 chr9 35354710 35354873 -106916571 + MER20B DNA MER1_type 626 781 -2 235 239 0 30 chr9 35355380 35355447 -106915997 + GA-rich Low_complexity Low_complexity 6 70 0 977 133 10 77 chr9 35355906 35356030 -106915414 - MER5A DNA MER1_type -6 183 75 2403 87 0 3 chr9 35356030 35356329 -106915115 + AluSx SINE Alu 1 298 -14 977 133 10 77 chr9 35356329 35356400 -106915044 - MER5A DNA MER1_type -114 75 1 488 263 42 133 chr9 35356447 35356634 -106914810 - L2 LINE L2 0 3313 3111 1665 174 35 3 chr9 35356634 35356916 -106914528 + AluJo SINE Alu 1 291 -21 2135 80 0 8 chr9 35356925 35357187 -106914257 + AluSg SINE Alu 36 295 -15 488 263 42 133 chr9 35357187 35357320 -106914124 - L2 LINE L2 -210 3103 3013 212 352 0 0 chr9 35357484 35357589 -106913855 + (TGAA)n Simple_repeat Simple_repeat 3 107 0 377 345 81 21 chr9 35358586 35358870 -106912574 + L1ME4a LINE L1 5329 5629 -492 309 284 0 0 chr9 35358988 35359069 -106912375 + L1ME4a LINE L1 5689 5769 -352 1873 175 17 0 chr9 35359094 35359385 -106912059 - AluJb SINE Alu -16 296 1 1904 228 78 72 chr9 35360105 35360789 -106910655 + LTR41 LTR ERVL 1 688 -85 1926 118 21 7 chr9 35360825 35361112 -106910332 - AluSx SINE Alu -21 291 1 716 296 59 9 chr9 35361385 35361853 -106909591 + LTR33 LTR ERVL 1 521 0 2317 100 3 3 chr9 35361970 35362279 -106909165 + AluSg SINE Alu 2 310 0 687 211 113 24 chr9 35362544 35362791 -106908653 + L1ME4a LINE L1 5847 6115 -6 1745 186 19 13 chr9 35362791 35363098 -106908346 - AluJo SINE Alu -3 309 1 2284 121 0 6 chr9 35363207 35363521 -106907923 - AluSx SINE Alu 0 312 1 316 252 269 0 chr9 35365126 35365245 -106906199 - MER5A DNA MER1_type 0 189 39 1572 103 0 10 chr9 35365571 35365775 -106905669 - AluSg/x SINE Alu -26 286 85 285 288 112 0 chr9 35365913 35366038 -106905406 + MER103 DNA DNA 25 163 -3 192 48 0 129 chr9 35366250 35366312 -106905132 + (TTTTG)n Simple_repeat Simple_repeat 3 56 0 2095 88 62 0 chr9 35366331 35366605 -106904839 - AluSx SINE Alu -17 295 5 1254 189 14 5 chr9 35366998 35367215 -106904229 + MER20 DNA MER1_type 1 219 0 1051 174 32 21 chr9 35367572 35367945 -106903499 - L1MA4A LINE L1 -4 6299 5862 246 323 24 60 chr9 35368023 35368089 -106903355 + L1ME LINE L1 5629 5696 -466 2319 89 7 26 chr9 35368089 35368393 -106903051 - AluSp SINE Alu -15 298 1 246 323 24 60 chr9 35368393 35368574 -106902870 + L1ME LINE L1 5696 5867 -295 833 160 0 0 chr9 35368588 35368713 -106902731 + FLAM_C SINE Alu 9 133 -10 1965 237 61 23 chr9 35368974 35369585 -106901859 - L1ME2 LINE L1 -1 6163 5530 691 190 171 19 chr9 35369590 35369795 -106901649 + L1ME2 LINE L1 5288 5523 -651 315 0 0 0 chr9 35369808 35369843 -106901601 + (CA)n Simple_repeat Simple_repeat 1 35 0 203 351 0 0 chr9 35370245 35370302 -106901142 + polypyrimidine Low_complexity Low_complexity 2 58 0 247 254 130 47 chr9 35370302 35370347 -106901097 - MIR SINE MIR -4 258 218 2254 110 0 13 chr9 35370347 35370647 -106900797 - AluSx SINE Alu -16 296 1 247 254 130 47 chr9 35370647 35370707 -106900737 - MIR SINE MIR -44 218 164 1606 168 36 4 chr9 35370707 35370981 -106900463 - AluJo SINE Alu -25 287 5 247 254 130 47 chr9 35370981 35371043 -106900401 - MIR SINE MIR -98 164 76 1336 218 160 14 chr9 35371053 35371484 -106899960 - MLT1D LTR MaLR -11 494 1 187 358 12 25 chr9 35371484 35371565 -106899879 - MIR3 SINE MIR -126 82 3 438 293 9 61 chr9 35372325 35372475 -106898969 + MIR SINE MIR 14 154 -66 326 272 18 18 chr9 35373007 35373121 -106898323 + MLT1K LTR MaLR 151 264 -324 241 213 53 40 chr9 35373425 35373500 -106897944 - MER91C DNA MER1_type -64 76 1 306 191 135 11 chr9 35373501 35373590 -106897854 - MIR SINE MIR -69 139 40 1617 98 0 0 chr9 35373796 35373999 -106897445 + AluSg/x SINE Alu 98 300 -12 1782 148 52 14 chr9 35374173 35374464 -106896980 + AluJb SINE Alu 1 302 -10 1290 269 73 19 chr9 35374557 35375022 -106896422 + LTR16C LTR ERVL 2 491 0 229 253 25 25 chr9 35375023 35375102 -106896342 + LTR67 LTR ERVL 469 547 -10 489 297 123 59 chr9 35375927 35376561 -106894883 - L2 LINE L2 -261 3011 2337 372 258 92 50 chr9 35376662 35376782 -106894662 + L2 LINE L2 3141 3265 -7 199 300 0 50 chr9 35377693 35377773 -106893671 - MIR SINE MIR -73 135 60 896 298 172 7 chr9 35377792 35378198 -106893246 + L2 LINE L2 2836 3308 -5 1961 155 0 3 chr9 35378525 35378815 -106892629 - AluJb SINE Alu -23 289 1 289 319 37 30 chr9 35378815 35378939 -106892505 - L2 LINE L2 -14 3299 3172 372 339 46 27 chr9 35379154 35379526 -106891918 - L2 LINE L2 -418 2896 2518 619 344 82 30 chr9 35379629 35380068 -106891376 + L2 LINE L2 2811 3272 0 282 298 217 12 chr9 35380633 35380794 -106890650 + L3 LINE CR1 1344 1537 -40 1920 126 22 0 chr9 35380795 35380995 -106890449 - AluSx SINE Alu 0 333 123 333 0 0 0 chr9 35380995 35381032 -106890412 + (TG)n Simple_repeat Simple_repeat 2 38 0 1920 126 22 0 chr9 35381032 35381158 -106890286 - AluSx SINE Alu -210 123 1 288 0 0 0 chr9 35381162 35381194 -106890250 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 1933 101 7 22 chr9 35381201 35381478 -106889966 - AluSx SINE Alu -39 273 1 21 0 0 0 chr9 35381766 35381787 -106889657 + AT_rich Low_complexity Low_complexity 1 21 0 906 121 8 0 chr9 35381787 35381911 -106889533 - FLAM_C SINE Alu -7 126 2 238 189 19 0 chr9 35381945 35381998 -106889446 + L1MC4 LINE L1 7987 8040 -2 339 287 10 10 chr9 35382020 35382121 -106889323 - MER5B DNA MER1_type -77 101 1 2178 104 7 3 chr9 35382301 35382598 -106888846 + AluSg SINE Alu 1 298 -12 245 328 88 19 chr9 35382799 35382978 -106888466 - MIR3 SINE MIR -52 156 1 279 231 25 32 chr9 35382981 35383072 -106888372 + CT-rich Low_complexity Low_complexity 1 90 0 303 263 136 8 chr9 35383551 35383669 -106887775 + MIR SINE MIR 20 152 -56 1306 214 104 33 chr9 35383955 35384572 -106886872 - L2 LINE L2 -32 3281 2626 227 27 0 54 chr9 35384806 35384843 -106886601 + (TTTTTG)n Simple_repeat Simple_repeat 1 35 0 2103 113 0 31 chr9 35385000 35385291 -106886153 - AluSg SINE Alu -5 305 24 192 308 92 25 chr9 35385480 35385600 -106885844 - L2 LINE L2 -213 3059 2932 1289 0 74 302 chr9 35385813 35386013 -106885431 - L1ME2 LINE L1 -22 6142 6011 1851 125 0 47 chr9 35386013 35386188 -106885256 - AluJo SINE Alu -12 300 141 1993 138 3 17 chr9 35386188 35386510 -106884934 - AluSx SINE Alu 0 312 1 1851 125 0 47 chr9 35386510 35386613 -106884831 - AluJo SINE Alu -171 141 35 1289 0 74 302 chr9 35386613 35386883 -106884561 - L1ME2 LINE L1 -153 6011 5681 781 331 70 31 chr9 35386904 35387348 -106884096 - L3 LINE CR1 -13 1564 1104 355 321 72 27 chr9 35387634 35387859 -106883585 - LTR16A LTR ERVL -221 229 2 418 324 29 7 chr9 35387980 35388119 -106883325 - L3 LINE CR1 -497 1080 939 470 303 42 19 chr9 35388910 35389095 -106882349 - MIR SINE MIR -23 239 43 205 342 0 0 chr9 35389515 35389591 -106881853 + (CA)n Simple_repeat Simple_repeat 2 77 0 368 297 110 0 chr9 35390142 35390260 -106881184 - L2 LINE L2 0 3313 3183 2286 85 10 33 chr9 35390298 35390605 -106880839 - AluSx SINE Alu -12 300 1 325 333 144 11 chr9 35391057 35391426 -106880018 - L2 LINE L2 -774 2540 2123 1553 125 92 60 chr9 35392027 35392308 -106879136 + AluJo SINE Alu 10 299 -13 384 167 42 0 chr9 35393128 35393200 -106878244 - MLT1J LTR MaLR -9 502 428 971 244 116 0 chr9 35393230 35393549 -106877895 - MLT1J LTR MaLR -152 359 4 2462 99 3 0 chr9 35394128 35394484 -106876960 - AluSp SINE Alu 0 357 1 230 296 0 0 chr9 35394524 35394578 -106876866 - L2 LINE L2 -224 3048 2995 2058 146 0 3 chr9 35394604 35394912 -106876532 + AluSx SINE Alu 1 307 -5 213 229 0 0 chr9 35395603 35395651 -106875793 - L2 LINE L2 0 3313 3266 238 143 63 0 chr9 35395672 35395735 -106875709 + (TA)n Simple_repeat Simple_repeat 2 68 0 480 308 89 54 chr9 35395931 35396317 -106875127 - L2 LINE L2 -221 3051 2636 767 263 83 33 chr9 35396380 35396620 -106874824 + MIR SINE MIR 2 253 -9 828 158 0 0 chr9 35396999 35397119 -106874325 - FLAM_A SINE Alu -13 120 1 453 161 0 69 chr9 35397046 35397123 -106874321 - AluJ/F(R)AM SINE Alu -103 209 137 1934 144 3 33 chr9 35397123 35397428 -106874016 - AluSx SINE Alu -16 296 1 269 240 83 52 chr9 35399735 35399831 -106871613 + L2 LINE L2 3152 3250 -22 510 274 67 17 chr9 35400338 35400517 -106870927 + MIR SINE MIR 17 204 -58 412 281 110 16 chr9 35400696 35400942 -106870502 + L1ME4a LINE L1 5575 5843 -278 2242 87 10 26 chr9 35401152 35401461 -106869983 + AluSx SINE Alu 1 304 -8 185 291 26 68 chr9 35401520 35401637 -106869807 + MIR3 SINE MIR 86 197 -11 487 266 158 0 chr9 35401784 35402006 -106869438 - MIR SINE MIR -1 261 5 2198 110 7 10 chr9 35402217 35402525 -106868919 + AluSx SINE Alu 1 307 -5 521 253 121 0 chr9 35402955 35403121 -106868323 - MIR SINE MIR -11 251 66 897 211 12 0 chr9 35403139 35403305 -106868139 - FAM SINE Alu -3 172 5 419 265 15 29 chr9 35404435 35404571 -106866873 + L1ME LINE L1 5615 5748 -418 25 0 0 0 chr9 35404794 35404819 -106866625 + AT_rich Low_complexity Low_complexity 1 25 0 237 182 0 73 chr9 35405341 35405396 -106866048 + L2 LINE L2 3263 3313 0 2540 83 3 0 chr9 35405515 35405827 -106865617 + AluSq SINE Alu 1 313 0 375 278 104 26 chr9 35406158 35406388 -106865056 - MIR SINE MIR -1 261 14 191 290 130 0 chr9 35406702 35406802 -106864642 - MIR SINE MIR -66 142 30 2129 115 0 3 chr9 35409319 35409606 -106861838 + AluSg SINE Alu 1 286 -24 195 284 74 21 chr9 35409910 35410005 -106861439 + MIR3 SINE MIR 7 106 -102 591 276 127 5 chr9 35410041 35410262 -106861182 + MIR SINE MIR 14 261 -1 1133 137 44 0 chr9 35411205 35411388 -106860056 + MER3 DNA MER1_type 12 202 -7 917 251 63 29 chr9 35411832 35412211 -106859233 - L1ME4a LINE L1 -4 6117 5726 2007 128 4 0 chr9 35412351 35412625 -106858819 + AluSx SINE Alu 1 275 -37 225 94 0 0 chr9 35412630 35412662 -106858782 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 402 255 9 0 chr9 35412694 35412800 -106858644 + L1ME LINE L1 5563 5669 -452 2298 86 7 3 chr9 35412821 35413112 -106858332 + AluSp SINE Alu 1 292 -21 2148 116 25 42 chr9 35413181 35413535 -106857909 + MER7A DNA MER2_type 1 346 0 2109 96 40 0 chr9 35413928 35414223 -106857221 + AluSq SINE Alu 1 306 0 337 243 156 52 chr9 35414447 35414546 -106856898 + MIR SINE MIR 56 143 -119 2405 125 17 3 chr9 35414546 35414906 -106856538 + MER47A DNA MER2_type 1 365 -1 337 243 156 52 chr9 35414906 35414979 -106856465 + MIR SINE MIR 143 246 -16 449 246 46 8 chr9 35415367 35415497 -106855947 + L2 LINE L2 3179 3313 0 2389 72 14 0 chr9 35415650 35415941 -106855503 + AluY SINE Alu 1 295 -16 2267 100 10 7 chr9 35416099 35416399 -106855045 - AluSx SINE Alu -11 301 1 1524 189 56 3 chr9 35417214 35417500 -106853944 - AluJb SINE Alu -10 302 2 469 226 126 65 chr9 35417674 35417739 -106853705 - MIR SINE MIR -45 217 157 2180 116 7 3 chr9 35417739 35418042 -106853402 - AluSx SINE Alu -8 304 1 469 226 126 65 chr9 35418042 35418175 -106853269 - MIR SINE MIR -105 157 7 997 168 164 14 chr9 35418222 35418430 -106853014 - MER8 DNA MER2_type 0 239 1 2108 132 4 0 chr9 35418855 35419166 -106852278 + AluSx SINE Alu 1 312 0 1804 143 18 4 chr9 35420065 35420345 -106851099 + AluJb SINE Alu 26 309 -3 397 252 59 8 chr9 35420352 35420471 -106850973 - L2 LINE L2 -14 3299 3175 503 273 56 32 chr9 35420645 35420861 -106850583 - L2 LINE L2 -671 2643 2423 180 152 0 0 chr9 35421745 35421778 -106849666 + T-rich Low_complexity Low_complexity 1 33 0 182 308 43 34 chr9 35421904 35422021 -106849423 + MIR SINE MIR 94 211 -51 2146 107 0 4 chr9 35422060 35422341 -106849103 - AluSx SINE Alu -21 291 12 2318 78 7 13 chr9 35422708 35423014 -106848430 + AluSq SINE Alu 1 304 -9 2129 142 3 0 chr9 35423093 35423403 -106848041 - AluSx SINE Alu -1 311 1 394 42 0 0 chr9 35423416 35423464 -106847980 - MER41A LTR ERV1 -110 444 397 372 283 131 14 chr9 35424769 35424914 -106846530 + MIR SINE MIR 36 197 -65 236 322 141 7 chr9 35425520 35425669 -106845775 + L2 LINE L2 2200 2368 -946 610 306 92 45 chr9 35425708 35426218 -106845226 + L2 LINE L2 1883 2416 -898 229 252 78 78 chr9 35426920 35427035 -106844409 + LTR67 LTR ERVL 428 542 -15 * 286 237 0 0 chr9 35426978 35427037 -106844407 + MLT1K LTR MaLR 515 573 -15 577 214 50 7 chr9 35427552 35427692 -106843752 - MER5B DNA MER1_type -32 146 1 1199 224 105 69 chr9 35427814 35428319 -106843125 - L1M4 LINE L1 -2511 3635 3105 1912 156 13 13 chr9 35428319 35428621 -106842823 - AluJo SINE Alu 0 312 11 1199 224 105 69 chr9 35428621 35428695 -106842749 - L1M4 LINE L1 -3041 3105 3035 2612 129 52 67 chr9 35428697 35428911 -106842533 - L1MC1 LINE L1 0 6333 6117 1950 154 10 0 chr9 35428911 35429204 -106842240 - AluSx SINE Alu -10 302 7 2612 129 52 67 chr9 35429204 35429509 -106841935 - L1MC1 LINE L1 -216 6117 5822 2054 150 0 0 chr9 35429521 35429827 -106841617 - AluJb SINE Alu -6 306 1 641 206 23 15 chr9 35429835 35429966 -106841478 - FLAM_A SINE Alu -5 137 6 246 150 0 0 chr9 35429971 35430011 -106841433 - L1MC1 LINE L1 -508 5825 5786 333 265 0 0 chr9 35430016 35430099 -106841345 - L1M4 LINE L1 -3113 3033 2951 460 167 0 0 chr9 35430102 35430186 -106841258 - L1MC5 LINE L1 -885 7076 6993 815 180 99 0 chr9 35430187 35430359 -106841085 + LTR41 LTR ERVL 2 190 -583 526 169 93 116 chr9 35430570 35430856 -106840588 + LTR41 LTR ERVL 460 523 0 2086 82 11 0 chr9 35431086 35431354 -106840090 + AluSx SINE Alu 1 271 -41 269 82 20 0 chr9 35431470 35431519 -106839925 + (TG)n Simple_repeat Simple_repeat 2 51 0 231 61 0 0 chr9 35431653 35431686 -106839758 + (CAGGG)n Simple_repeat Simple_repeat 3 35 0 198 0 0 0 chr9 35433107 35433129 -106838315 + (A)n Simple_repeat Simple_repeat 1 22 0 1406 161 90 7 chr9 35433135 35433414 -106838030 + AluJb SINE Alu 1 302 -10 304 244 83 113 chr9 35434338 35434604 -106836840 + MER112 DNA MER1_type 1 258 -2 304 188 14 0 chr9 35434651 35434720 -106836724 - MER112 DNA MER1_type -178 82 13 2383 69 7 0 chr9 35434722 35435011 -106836433 + AluY SINE Alu 1 291 -20 675 176 244 19 chr9 35436218 35436423 -106835021 + MIR SINE MIR 12 262 0 314 306 82 34 chr9 35436513 35436660 -106834784 - MIR SINE MIR -40 222 69 255 293 82 58 chr9 35436947 35437155 -106834289 - MIR SINE MIR -49 213 1 24 0 0 0 chr9 35438560 35438584 -106832860 + AT_rich Low_complexity Low_complexity 1 24 0 207 292 26 115 chr9 35438869 35439030 -106832414 + L2 LINE L2 2561 2698 -616 2114 100 41 0 chr9 35439030 35439321 -106832123 - AluSq SINE Alu -10 303 1 207 292 26 115 chr9 35439321 35439385 -106832059 + L2 LINE L2 2698 2766 -548 1672 155 40 25 chr9 35439544 35439821 -106831623 + AluJo SINE Alu 1 281 -31 296 374 0 0 chr9 35439987 35440094 -106831350 + L2 LINE L2 3143 3249 -23 * 436 293 64 71 chr9 35440090 35440356 -106831088 - L3 LINE CR1 -179 1398 1135 1632 180 70 97 chr9 35440530 35440974 -106830470 - MLT1E1 LTR MaLR -2 652 221 586 160 11 11 chr9 35440962 35441056 -106830388 - MLT1E1 LTR MaLR -558 96 3 * 825 264 182 9 chr9 35441109 35441596 -106829848 - L2 LINE L2 -5 3308 2907 1776 172 3 24 chr9 35441596 35441893 -106829551 + AluJo SINE Alu 3 293 -19 825 264 182 9 chr9 35441893 35442128 -106829316 - L2 LINE L2 -406 2907 2378 1958 145 10 0 chr9 35442139 35442450 -106828994 - L1MD3 LINE L1 -9 7986 7673 1505 160 0 13 chr9 35442523 35442761 -106828683 + AluJo SINE Alu 23 257 -55 291 254 118 18 chr9 35442835 35442945 -106828499 - L2 LINE L2 0 3313 3193 338 277 68 40 chr9 35443035 35443164 -106828280 + MIR SINE MIR 31 168 -94 2095 98 40 14 chr9 35443164 35443461 -106827983 - AluSc SINE Alu -4 305 1 338 277 68 40 chr9 35443461 35443508 -106827936 + MIR SINE MIR 168 212 -50 536 128 0 0 chr9 35444785 35444871 -106826573 - L1M2 LINE L1 -610 5681 5596 2178 135 0 0 chr9 35444885 35445182 -106826262 + AluSx SINE Alu 1 297 -15 1376 124 48 28 chr9 35445203 35445453 -106825991 - L1MA4 LINE L1 -3 6297 6043 1804 160 31 0 chr9 35445453 35445747 -106825697 - AluJo SINE Alu -9 303 1 2319 116 0 0 chr9 35445752 35446062 -106825382 - AluSg SINE Alu 0 310 1 22 0 0 0 chr9 35446062 35446084 -106825360 + AT_rich Low_complexity Low_complexity 1 22 0 2272 114 16 0 chr9 35447079 35447386 -106824058 + AluSx SINE Alu 1 312 0 238 250 185 12 chr9 35448163 35448280 -106823164 - L2 LINE L2 -3 3310 3178 525 353 114 12 chr9 35449161 35449645 -106821799 - L2 LINE L2 -647 2667 2135 466 280 164 11 chr9 35450534 35450723 -106820721 - MIR SINE MIR -43 219 2 2018 151 0 22 chr9 35450880 35451199 -106820245 - AluJb SINE Alu 0 312 1 1962 167 0 0 chr9 35451254 35451560 -106819884 + AluJo SINE Alu 1 306 -6 434 305 64 20 chr9 35451664 35451867 -106819577 + MIR SINE MIR 51 262 0 2455 77 0 0 chr9 35452169 35452467 -106818977 + AluY SINE Alu 1 298 -13 1010 138 0 0 chr9 35452738 35452883 -106818561 - FRAM SINE Alu -30 146 2 309 226 0 0 chr9 35452889 35452951 -106818493 + MER5B DNA MER1_type 117 178 0 404 294 191 29 chr9 35453224 35453533 -106817911 + MARNA DNA Mariner 169 527 -59 588 95 0 48 chr9 35454400 35454505 -106816939 - MER50 LTR ERV1 -138 596 497 2333 99 0 0 chr9 35454650 35454943 -106816501 - AluSg SINE Alu -17 293 1 280 254 15 0 chr9 35455023 35455090 -106816354 + L2 LINE L2 3246 3313 0 473 258 67 0 chr9 35455333 35455453 -106815991 + MIR SINE MIR 54 181 -81 2263 119 0 0 chr9 35455681 35455983 -106815461 + AluSx SINE Alu 1 302 -10 267 268 0 28 chr9 35456194 35456265 -106815179 - MIR3 SINE MIR -136 72 4 329 316 6 29 chr9 35456334 35456399 -106815045 + GA-rich Low_complexity Low_complexity 4 69 -104 886 125 0 22 chr9 35456399 35456535 -106814909 + FLAM_C SINE Alu 1 133 0 329 316 6 29 chr9 35456535 35456643 -106814801 + GA-rich Low_complexity Low_complexity 69 173 0 2230 114 3 3 chr9 35457078 35457376 -106814068 - AluSx SINE Alu -14 298 1 660 139 43 0 chr9 35457487 35457602 -106813842 + AluSq/x SINE Alu 2 121 -192 2132 134 0 0 chr9 35457786 35458085 -106813359 + AluSx SINE Alu 1 299 -13 560 265 41 49 chr9 35458091 35458336 -106813108 + L1ME2 LINE L1 5922 6164 0 1297 69 6 0 chr9 35458474 35458633 -106812811 + AluSq SINE Alu 140 299 -14 190 337 134 45 chr9 35458636 35458971 -106812473 - L3 LINE CR1 -44 1533 1169 1613 167 45 21 chr9 35459008 35459295 -106812149 + AluJb SINE Alu 1 294 -18 238 130 130 0 chr9 35459703 35459749 -106811695 - AluSc SINE Alu -6 296 245 419 129 0 0 chr9 35459749 35459811 -106811633 - AluSc SINE Alu -114 195 134 433 328 225 10 chr9 35459825 35460212 -106811232 - L3 LINE CR1 -627 950 481 2037 158 3 6 chr9 35460528 35460839 -106810605 + AluJb SINE Alu 1 310 -2 277 108 0 0 chr9 35460942 35460979 -106810465 + Alu SINE Alu 4 40 -262 550 148 11 0 chr9 35460979 35461067 -106810377 + AluJb SINE Alu 208 296 -16 2259 103 10 0 chr9 35461084 35461375 -106810069 + AluSq SINE Alu 1 294 -19 2098 136 0 0 chr9 35462915 35463201 -106808243 - AluSx SINE Alu -26 286 1 2368 102 3 13 chr9 35463342 35463656 -106807788 - AluSx SINE Alu -1 311 1 6415 197 105 49 chr9 35464887 35464986 -106806458 + L1M4b LINE L1 4 96 -6863 1825 176 3 13 chr9 35464986 35465288 -106806156 + AluJb SINE Alu 1 299 -13 6415 197 105 49 chr9 35465288 35465310 -106806134 + L1M4b LINE L1 96 115 -6844 2222 133 0 3 chr9 35465310 35465610 -106805834 + AluSx SINE Alu 1 299 -13 6415 197 105 49 chr9 35465610 35466865 -106804579 + L1M4b LINE L1 115 1299 -5660 2374 107 0 0 chr9 35466865 35467174 -106804270 + AluSg SINE Alu 1 309 -1 6415 197 105 49 chr9 35467174 35467352 -106804092 + L1M4b LINE L1 1299 1466 -5493 1604 193 10 39 chr9 35467352 35467488 -106803956 + AluJo SINE Alu 1 139 -173 2202 133 0 3 chr9 35467488 35467788 -106803656 + AluSx SINE Alu 1 299 -13 1604 193 10 39 chr9 35467788 35467957 -106803487 + AluJo SINE Alu 139 297 -15 6415 197 105 49 chr9 35467957 35468038 -106803406 + L1M4b LINE L1 1466 1541 -5418 2411 80 10 17 chr9 35468038 35468340 -106803104 + AluY SINE Alu 1 300 -11 6415 197 105 49 chr9 35468340 35468773 -106802671 + L1M4b LINE L1 1541 2185 -4774 2390 69 31 0 chr9 35468774 35469065 -106802379 + AluY SINE Alu 1 300 -11 473 254 136 103 chr9 35469562 35469960 -106801484 + MLT1J LTR MaLR 101 511 0 1085 75 0 8 chr9 35470572 35470706 -106800738 - AluSq/x SINE Alu -179 133 1 186 43 0 0 chr9 35470722 35470745 -106800699 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 246 81 0 0 chr9 35470836 35470873 -106800571 + (CA)n Simple_repeat Simple_repeat 1 37 0 2416 86 0 19 chr9 35471496 35471811 -106799633 + AluY SINE Alu 1 309 -2 2188 114 0 13 chr9 35471825 35471961 -106799483 + AluSx SINE Alu 1 137 -175 2266 107 0 20 chr9 35471961 35472259 -106799185 + AluSp SINE Alu 1 292 -21 2188 114 0 13 chr9 35472259 35472429 -106799015 + AluSx SINE Alu 137 303 -9 428 248 74 0 chr9 35473815 35473936 -106797508 - MIR SINE MIR -83 179 50 1516 88 0 0 chr9 35474724 35474905 -106796539 + AluSg SINE Alu 1 181 -129 2209 103 3 38 chr9 35475276 35475596 -106795848 + AluSc SINE Alu 1 309 0 2305 103 3 22 chr9 35475608 35475927 -106795517 + AluSp SINE Alu 1 313 0 2141 95 13 63 chr9 35476401 35476717 -106794727 - AluSq SINE Alu -13 300 1 338 259 0 76 chr9 35476791 35476922 -106794522 - L2 LINE L2 -570 2744 2624 2461 87 0 0 chr9 35477473 35477772 -106793672 - AluSg SINE Alu -11 299 1 1980 105 59 36 chr9 35478106 35478410 -106793034 + AluSq SINE Alu 1 311 -2 258 229 60 24 chr9 35478601 35478684 -106792760 + MIR SINE MIR 36 121 -87 846 81 8 32 chr9 35479237 35479360 -106792084 + FLAM_C SINE Alu 23 142 -1 2367 100 10 3 chr9 35479972 35480282 -106791162 + AluSq SINE Alu 1 312 -1 270 333 75 0 chr9 35480422 35480515 -106790929 - MIR SINE MIR -107 155 56 273 309 13 81 chr9 35481209 35481358 -106790086 + MIR SINE MIR 113 251 -11 190 253 24 60 chr9 35481497 35481580 -106789864 - L2 LINE L2 -38 3275 3196 625 150 67 25 chr9 35481653 35481773 -106789671 - FLAM_C SINE Alu -7 126 2 521 275 67 31 chr9 35485636 35485829 -106785615 - MIR SINE MIR -57 205 6 709 255 114 134 chr9 35490406 35490595 -106780849 + L2 LINE L2 2285 2476 -837 2328 62 24 0 chr9 35490595 35490883 -106780561 + AluY SINE Alu 1 295 -16 709 255 114 134 chr9 35490883 35491174 -106780270 + L2 LINE L2 2476 2771 -542 2053 114 45 10 chr9 35491174 35491464 -106779980 + AluSq SINE Alu 1 300 -13 709 255 114 134 chr9 35491464 35492033 -106779411 + L2 LINE L2 2771 3295 -18 2169 126 13 0 chr9 35492874 35493175 -106778269 + AluSx SINE Alu 1 305 -7 323 365 32 6 chr9 35494398 35494554 -106776890 + L2 LINE L2 2467 2626 -688 315 0 0 0 chr9 35494610 35494645 -106776799 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1883 142 0 0 chr9 35494652 35494927 -106776517 - AluSx SINE Alu -37 275 1 787 247 83 39 chr9 35494927 35495280 -106776164 - L1MC4 LINE L1 -4 8038 7572 329 0 24 0 chr9 35495300 35495341 -106776103 + (TA)n Simple_repeat Simple_repeat 2 43 0 1981 143 7 13 chr9 35495341 35495649 -106775795 - AluSx SINE Alu -6 306 1 711 231 52 9 chr9 35495652 35495864 -106775580 - L1ME3A LINE L1 -5 6165 5945 2442 58 0 10 chr9 35495874 35496195 -106775249 - AluY SINE Alu 0 311 1 324 339 8 0 chr9 35496233 35496363 -106775081 + L2 LINE L2 2654 2784 -530 186 71 0 0 chr9 35496413 35496441 -106775003 + (TTTTA)n Simple_repeat Simple_repeat 3 30 0 2138 112 0 18 chr9 35496443 35496728 -106774716 - AluSx SINE Alu -32 280 1 1074 189 219 0 chr9 35496757 35496985 -106774459 - AluJb SINE Alu -34 278 1 266 369 67 17 chr9 35496994 35497173 -106774271 + L2 LINE L2 2841 3028 -244 1339 142 49 0 chr9 35497173 35497377 -106774067 - AluJb SINE Alu -98 214 1 2047 148 13 0 chr9 35497428 35497732 -106773712 - AluSx SINE Alu -2 310 3 198 71 0 0 chr9 35497755 35497783 -106773661 + (TCCC)n Simple_repeat Simple_repeat 2 29 0 2103 124 6 13 chr9 35497792 35498106 -106773338 - AluSx SINE Alu 0 312 1 1344 185 0 0 chr9 35498903 35499119 -106772325 + AluJo SINE Alu 22 237 -75 2508 79 0 3 chr9 35499389 35499693 -106771751 - AluSq SINE Alu -10 303 1 1391 172 31 35 chr9 35499895 35500151 -106771293 + AluJo SINE Alu 34 288 -24 2222 107 3 0 chr9 35500235 35500526 -106770918 + AluSx SINE Alu 2 293 -19 843 129 23 23 chr9 35503907 35504039 -106767405 - FLAM_C SINE Alu 0 133 2 2400 89 3 13 chr9 35504427 35504740 -106766704 - AluSx SINE Alu -2 310 1 312 175 0 0 chr9 35507284 35507347 -106764097 + (TG)n Simple_repeat Simple_repeat 1 63 0 29 0 0 0 chr9 35507860 35507889 -106763555 + AT_rich Low_complexity Low_complexity 1 29 0 301 253 121 20 chr9 35508176 35508275 -106763169 + L3 LINE CR1 1344 1452 -125 191 326 91 0 chr9 35508304 35508436 -106763008 + L2 LINE L2 2563 2706 -608 182 281 53 0 chr9 35509083 35509140 -106762304 - MIR SINE MIR -68 140 81 364 260 187 20 chr9 35509504 35509654 -106761790 + MIR SINE MIR 77 251 -11 2578 53 0 3 chr9 35510184 35510483 -106760961 + AluY SINE Alu 1 298 -13 2284 109 0 0 chr9 35510483 35510776 -106760668 + AluSg SINE Alu 1 294 -16 2261 113 0 0 chr9 35511153 35511468 -106759976 - AluSq SINE Alu 0 313 1 208 214 0 0 chr9 35511748 35511790 -106759654 + (GGGTG)n Simple_repeat Simple_repeat 4 45 0 204 242 65 0 chr9 35512264 35512326 -106759118 - MIR SINE MIR -108 100 35 508 241 62 43 chr9 35512443 35512605 -106758839 + LTR33 LTR ERVL 26 190 -331 440 279 93 5 chr9 35512629 35512833 -106758611 + LTR33 LTR ERVL 297 518 -3 519 269 47 27 chr9 35512836 35512985 -106758459 + MIR SINE MIR 107 258 -4 183 250 39 0 chr9 35513437 35513489 -106757955 - L3b LINE CR1 -178 1405 1352 277 288 9 0 chr9 35514595 35514706 -106756738 + (CA)n Simple_repeat Simple_repeat 2 113 0 2195 109 0 14 chr9 35515499 35515793 -106755651 - AluSx SINE Alu -22 290 1 1885 166 16 3 chr9 35515797 35516104 -106755340 - AluJo SINE Alu -1 311 1 1018 127 0 0 chr9 35516139 35516281 -106755163 + AluSq/x SINE Alu 1 142 -171 315 231 13 0 chr9 35516533 35516611 -106754833 + AluS SINE Alu 1 79 -224 1482 170 0 12 chr9 35516611 35516887 -106754557 + AluSx SINE Alu 33 305 0 1485 191 19 44 chr9 35516901 35517221 -106754223 - AluJo SINE Alu 0 312 1 2310 108 0 0 chr9 35517227 35517524 -106753920 - AluSq SINE Alu -16 297 1 538 306 104 20 chr9 35517625 35517972 -106753472 - MLT1K LTR MaLR -2 586 211 189 234 0 94 chr9 35518051 35518115 -106753329 - L2 LINE L2 -93 3220 3163 225 129 0 0 chr9 35518127 35518158 -106753286 - MER45 DNA AcHobo -1499 82 52 392 293 108 6 chr9 35518185 35518352 -106753092 - L2 LINE L2 -245 3027 2844 236 348 0 44 chr9 35518550 35518685 -106752759 + MIR3 SINE MIR 71 199 -9 220 27 54 0 chr9 35518959 35518996 -106752448 + (CAAA)n Simple_repeat Simple_repeat 4 42 0 2135 111 3 7 chr9 35518998 35519317 -106752127 + AluSx SINE Alu 1 318 0 2123 147 0 13 chr9 35519552 35519866 -106751578 + AluJb SINE Alu 1 310 -2 1599 142 76 16 chr9 35519872 35520188 -106751256 + L1MB7 LINE L1 5833 6167 -17 2341 98 0 3 chr9 35520204 35520501 -106750943 - AluSc SINE Alu -13 296 1 2095 128 0 0 chr9 35520580 35520901 -106750543 - AluSx SINE Alu 0 323 3 2397 67 3 0 chr9 35521196 35521515 -106749929 - AluSp SINE Alu 0 320 1 1611 111 5 9 chr9 35521541 35521758 -106749686 + AluJo SINE Alu 84 299 -13 278 191 246 9 chr9 35521819 35521929 -106749515 + L2 LINE L2 3178 3313 0 2363 76 0 7 chr9 35523266 35523554 -106747890 - AluSx SINE Alu -22 290 5 2302 104 3 0 chr9 35523562 35523861 -106747583 - AluSx SINE Alu -12 300 1 362 343 114 0 chr9 35523956 35524096 -106747348 + L2 LINE L2 3117 3272 0 278 246 87 0 chr9 35524088 35524157 -106747287 - MIR SINE MIR -2 260 186 * 2555 64 0 6 chr9 35524428 35524741 -106746703 + AluY SINE Alu 1 311 0 183 100 0 0 chr9 35524837 35524867 -106746577 + (T)n Simple_repeat Simple_repeat 1 30 0 226 209 0 0 chr9 35524867 35524910 -106746534 - MER58A DNA MER1_type -23 84 42 7076 119 26 67 chr9 35525070 35526434 -106745010 - SVA Other Other 0 1386 79 342 331 42 14 chr9 35526493 35526635 -106744809 + L1ME2 LINE L1 5594 5739 -382 27 29 0 0 chr9 35526638 35526672 -106744772 + AT_rich Low_complexity Low_complexity 1 34 0 541 265 41 49 chr9 35527116 35527361 -106744083 + L1ME2 LINE L1 5922 6164 0 1289 69 6 0 chr9 35527499 35527658 -106743786 + AluSq SINE Alu 140 299 -14 251 330 138 42 chr9 35527661 35528015 -106743429 - L3 LINE CR1 -44 1533 1146 1611 170 45 21 chr9 35528033 35528321 -106743123 + AluJb SINE Alu 1 295 -17 236 130 130 0 chr9 35528729 35528775 -106742669 - AluSc SINE Alu -6 296 245 449 129 0 0 chr9 35528775 35528837 -106742607 - AluSc SINE Alu -114 195 134 488 328 225 10 chr9 35528851 35529238 -106742206 - L3 LINE CR1 -627 950 481 2176 154 0 0 chr9 35529554 35529866 -106741578 + AluJb SINE Alu 1 312 0 271 108 0 0 chr9 35529969 35530006 -106741438 + Alu SINE Alu 4 40 -262 595 146 11 0 chr9 35530006 35530095 -106741349 + AluJb SINE Alu 208 297 -15 2406 97 10 0 chr9 35530112 35530420 -106741024 + AluSq SINE Alu 1 311 -2 2083 136 0 0 chr9 35531942 35532228 -106739216 - AluSx SINE Alu -26 286 1 2363 102 3 13 chr9 35532369 35532683 -106738761 - AluSx SINE Alu -1 311 1 6305 204 110 50 chr9 35533913 35534012 -106737432 + L1M4b LINE L1 4 96 -6863 1818 176 3 13 chr9 35534012 35534314 -106737130 + AluJb SINE Alu 1 299 -13 6305 204 110 50 chr9 35534314 35534336 -106737108 + L1M4b LINE L1 96 115 -6844 2216 133 0 3 chr9 35534336 35534636 -106736808 + AluSx SINE Alu 1 299 -13 6305 204 110 50 chr9 35534636 35535891 -106735553 + L1M4b LINE L1 115 1293 -5666 2370 107 0 0 chr9 35535891 35536200 -106735244 + AluSg SINE Alu 1 309 -1 6305 204 110 50 chr9 35536200 35536379 -106735065 + L1M4b LINE L1 1293 1460 -5499 1599 193 10 39 chr9 35536379 35536515 -106734929 + AluJo SINE Alu 1 139 -173 2279 127 0 0 chr9 35536515 35536814 -106734630 + AluSx SINE Alu 1 299 -13 1599 193 10 39 chr9 35536814 35536983 -106734461 + AluJo SINE Alu 139 297 -15 6305 204 110 50 chr9 35536983 35537064 -106734380 + L1M4b LINE L1 1460 1535 -5424 2402 80 10 17 chr9 35537064 35537366 -106734078 + AluY SINE Alu 1 300 -11 6305 204 110 50 chr9 35537366 35537800 -106733644 + L1M4b LINE L1 1535 1942 -5017 2551 56 7 3 chr9 35537800 35538106 -106733338 + AluY SINE Alu 1 307 -4 6305 204 110 50 chr9 35538106 35538380 -106733064 + L1M4b LINE L1 1942 2502 -4457 583 276 83 45 chr9 35538465 35538547 -106732897 + L1M4b LINE L1 2476 2553 -4585 2233 146 0 0 chr9 35538547 35538855 -106732589 + AluSx SINE Alu 1 308 -4 1546 214 3 7 chr9 35538855 35539143 -106732301 + AluJo SINE Alu 1 288 -24 583 276 83 45 chr9 35539143 35539574 -106731870 + L1M4b LINE L1 2552 3010 -4128 845 194 0 0 chr9 35539605 35539739 -106731705 - AluJo SINE Alu -178 134 1 410 247 14 14 chr9 35539739 35539795 -106731649 + L1M4b LINE L1 2988 3043 -3914 2348 74 0 7 chr9 35539795 35540079 -106731365 - AluSg SINE Alu -28 282 1 410 247 14 14 chr9 35540079 35540168 -106731276 + L1M4b LINE L1 3042 3133 -3824 1726 170 6 49 chr9 35540415 35540739 -106730705 - AluJb SINE Alu -2 310 1 1453 217 50 110 chr9 35541397 35541978 -106729466 - MER77 LTR ERV1 -4 601 56 2194 144 0 0 chr9 35542059 35542371 -106729073 - AluSx SINE Alu 0 312 1 1144 89 0 0 chr9 35542371 35542506 -106728938 - AluSq/x SINE Alu -178 135 1 2259 83 48 0 chr9 35543309 35543598 -106727846 + AluY SINE Alu 1 303 -8 316 153 137 48 chr9 35544911 35545035 -106726409 + L1ME2 LINE L1 5991 6125 -39 348 304 65 24 chr9 35545089 35545257 -106726187 + L1MC4 LINE L1 7833 8007 -35 2292 110 3 0 chr9 35545257 35545557 -106725887 - AluSx SINE Alu -11 301 1 435 298 35 0 chr9 35545679 35545820 -106725624 - MLT1L LTR MaLR 0 615 470 437 275 135 10 chr9 35546004 35546197 -106725247 - MLT1L LTR MaLR -398 217 1 2324 114 0 0 chr9 35546277 35546576 -106724868 + AluSx SINE Alu 3 301 -11 1771 194 7 7 chr9 35546585 35546894 -106724550 + AluJo SINE Alu 1 309 -3 301 272 130 27 chr9 35547073 35547257 -106724187 - L1MC4a LINE L1 -1898 5910 5708 423 261 37 43 chr9 35547298 35547486 -106723958 - L1MC5 LINE L1 -50 7911 7725 374 102 286 0 chr9 35547497 35547595 -106723849 - L1MB5 LINE L1 0 6174 6049 2498 92 0 6 chr9 35547630 35547945 -106723499 - AluSq SINE Alu 0 313 1 26 0 0 0 chr9 35547945 35547971 -106723473 + AT_rich Low_complexity Low_complexity 1 26 0 575 165 0 0 chr9 35547971 35548062 -106723382 - FLAM_C SINE Alu -23 120 30 2971 158 44 31 chr9 35548064 35548624 -106722820 - L1MB5 LINE L1 -115 6059 5489 2371 88 0 0 chr9 35548624 35548921 -106722523 - AluSg SINE Alu -8 302 6 2971 158 44 31 chr9 35548921 35548976 -106722468 - L1MB5 LINE L1 -685 5489 5436 824 189 34 0 chr9 35549026 35549174 -106722270 - AluJb SINE Alu -20 292 140 22 70 0 0 chr9 35549179 35549222 -106722222 + AT_rich Low_complexity Low_complexity 1 43 0 1925 61 4 4 chr9 35549232 35549462 -106721982 + AluSq SINE Alu 1 230 -83 568 150 0 0 chr9 35549465 35549545 -106721899 - AluJo/FLAM SINE Alu -188 124 45 1055 169 36 1 chr9 35549573 35549874 -106721570 - MER2 DNA MER2_type 0 345 8 827 230 7 0 chr9 35549993 35550141 -106721303 + FRAM SINE Alu 1 146 -30 261 0 0 0 chr9 35550144 35550173 -106721271 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2471 98 0 0 chr9 35550179 35550485 -106720959 + AluSx SINE Alu 1 306 -6 2155 131 3 0 chr9 35550487 35550792 -106720652 + AluSx SINE Alu 2 307 -5 40 21 0 0 chr9 35551413 35551460 -106719984 + AT_rich Low_complexity Low_complexity 1 47 0 220 165 35 71 chr9 35551524 35551587 -106719857 + (TA)n Simple_repeat Simple_repeat 1 65 -17 2096 128 57 25 chr9 35551587 35551940 -106719504 - THE1B LTR MaLR 0 364 1 12292 88 5 0 chr9 35551940 35553513 -106717931 - THE1B-int LTR MaLR 0 1580 1 2225 123 47 33 chr9 35553513 35553872 -106717572 - THE1B LTR MaLR 0 364 1 220 165 35 71 chr9 35553872 35553891 -106717553 + (TA)n Simple_repeat Simple_repeat 62 82 0 29 0 0 0 chr9 35553951 35553980 -106717464 + AT_rich Low_complexity Low_complexity 1 29 0 822 157 21 14 chr9 35554061 35554201 -106717243 + AluJb SINE Alu 1 141 -171 2083 125 4 0 chr9 35554247 35554528 -106716916 + AluSx SINE Alu 1 282 -30 207 0 0 0 chr9 35554541 35554564 -106716880 + (CA)n Simple_repeat Simple_repeat 1 23 0 29 0 0 0 chr9 35554568 35554597 -106716847 + AT_rich Low_complexity Low_complexity 1 29 0 2313 76 0 4 chr9 35554602 35554878 -106716566 + AluY SINE Alu 13 287 -24 598 202 46 35 chr9 35554892 35555065 -106716379 - L1MC5 LINE L1 -56 7905 7731 2049 198 165 16 chr9 35555577 35556260 -106715184 - Charlie1 DNA MER1_type 0 2761 1977 25 31 0 0 chr9 35556307 35556339 -106715105 + AT_rich Low_complexity Low_complexity 1 32 0 304 282 64 44 chr9 35556933 35556995 -106714449 - L1ME4a LINE L1 -2 6119 6060 2355 86 0 3 chr9 35556995 35557286 -106714158 + AluSc SINE Alu 1 290 -19 2403 119 0 0 chr9 35557290 35557602 -106713842 + AluSx SINE Alu 1 312 0 2369 109 0 0 chr9 35557605 35557907 -106713537 + AluSx SINE Alu 1 302 -10 304 282 64 44 chr9 35557907 35558243 -106713201 - L1ME4a LINE L1 -64 6057 5704 751 237 50 5 chr9 35559657 35559876 -106711568 - L1ME1 LINE L1 -2 6164 5936 5209 58 24 38 chr9 35559900 35560481 -106710963 + L1PB1 LINE L1 5444 6015 -136 2059 105 20 30 chr9 35560481 35560777 -106710667 + AluSg SINE Alu 3 295 -15 5209 58 24 38 chr9 35560777 35560913 -106710531 + L1PB1 LINE L1 6015 6151 0 1174 169 24 0 chr9 35560923 35561136 -106710308 - Tigger1 DNA MER2_type -2187 231 14 427 252 63 49 chr9 35561545 35561688 -106709756 - L2 LINE L2 -5 3308 3164 1358 164 9 14 chr9 35562222 35562433 -106709011 + AluJo SINE Alu 85 296 -16 2411 109 0 0 chr9 35562433 35562745 -106708699 + AluSx SINE Alu 1 312 0 789 198 0 0 chr9 35563121 35563242 -106708202 + FLAM_A SINE Alu 1 121 -12 2073 121 16 20 chr9 35563275 35563580 -106707864 + AluSx SINE Alu 1 304 -8 1571 184 60 11 chr9 35563588 35563871 -106707573 + AluJb SINE Alu 2 298 -14 303 301 54 0 chr9 35564471 35564564 -106706880 - L2 LINE L2 -1 3271 3174 596 48 60 0 chr9 35565201 35565285 -106706159 - HY3 scRNA scRNA -1 100 12 529 132 245 0 chr9 35565350 35565456 -106705988 - FLAM_C SINE Alu 0 133 2 180 354 80 9 chr9 35565923 35566036 -106705408 - L2 LINE L2 -24 3289 3169 2348 111 0 3 chr9 35566093 35566399 -106705045 - AluSq SINE Alu -8 305 1 1899 240 99 59 chr9 35567613 35568047 -106703397 - L1ME3A LINE L1 -3 6167 5752 2339 115 0 0 chr9 35568047 35568352 -106703092 - AluSq SINE Alu -8 305 1 1899 240 99 59 chr9 35568352 35569187 -106702257 - L1ME3A LINE L1 -418 5752 4860 1236 166 9 23 chr9 35569200 35569417 -106702027 + AluJb SINE Alu 87 300 -12 2090 92 29 57 chr9 35569419 35569733 -106701711 + AluY SINE Alu 1 305 -6 815 248 110 70 chr9 35569748 35569932 -106701512 - L1ME3A LINE L1 -1301 4845 4670 1749 178 3 44 chr9 35569932 35570252 -106701192 - AluJo SINE Alu -5 307 1 815 248 110 70 chr9 35570252 35570523 -106700921 - L1ME3A LINE L1 -1476 4670 4372 2340 100 0 0 chr9 35570540 35570831 -106700613 - AluY SINE Alu -20 291 1 35 0 0 0 chr9 35570834 35570869 -106700575 + AT_rich Low_complexity Low_complexity 1 35 0 1436 167 23 109 chr9 35571057 35571405 -106700039 - AluYb8 SINE Alu 0 318 1 647 210 44 151 chr9 35571414 35571723 -106699721 - L1ME3A LINE L1 -1784 4362 4104 2333 101 0 0 chr9 35571723 35572020 -106699424 + AluSx SINE Alu 1 297 -15 647 210 44 151 chr9 35572020 35572115 -106699329 - L1ME3A LINE L1 -2042 4104 4001 280 247 62 0 chr9 35572192 35572289 -106699155 + L1MC4 LINE L1 7940 8042 0 910 230 15 49 chr9 35572605 35572870 -106698574 + MIR SINE MIR 5 260 -2 198 275 0 0 chr9 35573012 35573081 -106698363 + (TA)n Simple_repeat Simple_repeat 1 69 0 237 216 115 101 chr9 35573105 35573253 -106698191 + Charlie8 DNA MER1_type 24 173 -2244 379 326 81 27 chr9 35573483 35573704 -106697740 + L1ME4a LINE L1 5659 5891 -230 718 76 98 8 chr9 35573721 35573853 -106697591 - L1MA8 LINE L1 -2 6289 6146 2265 82 0 0 chr9 35573897 35574167 -106697277 + AluSq SINE Alu 1 270 -43 227 135 0 0 chr9 35574167 35574204 -106697240 + AluSq SINE Alu 253 289 -14 3923 138 30 44 chr9 35574237 35574248 -106697196 + L1MA6 LINE L1 5510 5520 -780 1886 162 10 3 chr9 35574248 35574557 -106696887 + AluJb SINE Alu 1 311 -1 3923 138 30 44 chr9 35574557 35575099 -106696345 + L1MA6 LINE L1 5520 6051 -249 2535 84 0 0 chr9 35575099 35575409 -106696035 - AluSp SINE Alu -3 310 1 3923 138 30 44 chr9 35575409 35575656 -106695788 + L1MA6 LINE L1 6051 6300 0 336 24 0 0 chr9 35575669 35575710 -106695734 + (TTA)n Simple_repeat Simple_repeat 1 41 0 2041 136 4 0 chr9 35575710 35575989 -106695455 - AluSx SINE Alu -32 280 1 182 345 36 0 chr9 35576766 35576821 -106694623 + L3b LINE CR1 1509 1565 -18 2143 126 0 0 chr9 35577397 35577706 -106693738 + AluSq SINE Alu 1 309 0 1957 160 3 13 chr9 35577730 35578042 -106693402 + AluJb SINE Alu 2 310 -2 226 315 79 11 chr9 35578129 35578218 -106693226 + L3 LINE CR1 1226 1320 -257 2268 87 0 10 chr9 35580357 35580655 -106690789 + AluSx SINE Alu 1 295 -17 2584 63 7 0 chr9 35581465 35581768 -106689676 - AluY SINE Alu -6 305 1 322 213 88 110 chr9 35581802 35581938 -106689506 - L1MC5 LINE L1 -31 7930 7798 329 281 29 29 chr9 35581944 35582083 -106689361 + Tigger8 DNA MER2_type 401 539 -127 21 0 0 0 chr9 35582184 35582205 -106689239 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 35583536 35583558 -106687886 + AT_rich Low_complexity Low_complexity 1 22 0 216 267 31 27 chr9 35583868 35583984 -106687460 + MIR SINE MIR 38 207 -55 242 300 64 91 chr9 35584542 35584607 -106686837 - L2 LINE L2 -557 2757 2692 1432 213 52 9 chr9 35584607 35584931 -106686513 - MER58B DNA MER1_type 0 341 4 242 300 64 91 chr9 35584931 35585085 -106686359 - L2 LINE L2 -622 2692 2544 203 152 0 0 chr9 35585583 35585616 -106685828 + GA-rich Low_complexity Low_complexity 2 34 0 185 235 278 17 chr9 35586192 35586307 -106685137 + MIR3 SINE MIR 1 145 -63 201 273 0 0 chr9 35586626 35586670 -106684774 - MIR SINE MIR 0 262 219 784 159 45 70 chr9 35586708 35586865 -106684579 + FRAM SINE Alu 6 158 -18 2009 136 10 7 chr9 35586865 35587159 -106684285 + AluJo SINE Alu 1 295 -17 505 238 19 9 chr9 35587160 35587286 -106684158 - MIR SINE MIR -62 146 45 1787 255 146 39 chr9 35587719 35587956 -106683488 - L2 LINE L2 -340 2974 2764 2025 122 7 0 chr9 35587956 35588244 -106683200 - AluSx SINE Alu -22 290 1 1787 255 146 39 chr9 35588244 35588802 -106682642 - L2 LINE L2 -550 2764 2094 2555 61 0 0 chr9 35589063 35589360 -106682084 - AluY SINE Alu -14 297 1 1368 169 111 69 chr9 35589939 35590371 -106681073 - LTR7 LTR ERV1 0 450 1 320 209 13 3 chr9 35591158 35591236 -106680208 - MIR SINE MIR -43 165 88 2666 20 7 3 chr9 35591256 35591556 -106679888 - AluY SINE Alu -10 301 1 2381 108 0 0 chr9 35591670 35591977 -106679467 + AluSx SINE Alu 1 307 -5 384 238 0 0 chr9 35592238 35592318 -106679126 - MIR SINE MIR -160 102 23 315 322 68 0 chr9 35592737 35592855 -106678589 - MIR3 SINE MIR -23 185 60 228 315 0 0 chr9 35592939 35592993 -106678451 + (TG)n Simple_repeat Simple_repeat 1 54 0 299 130 19 0 chr9 35593056 35593110 -106678334 + CT-rich Low_complexity Low_complexity 4 58 0 832 228 301 8 chr9 35593209 35593591 -106677853 + L2 LINE L2 2819 3312 -1 1384 381 0 26 chr9 35594213 35594523 -106676921 + AluSx SINE Alu 1 302 -10 2110 120 36 0 chr9 35594523 35594857 -106676587 + L1MB3 LINE L1 5665 6010 -173 349 70 53 18 chr9 35594857 35594914 -106676530 + MER57A LTR ERV1 7 65 -338 2280 108 3 0 chr9 35594915 35595210 -106676234 + AluSx SINE Alu 1 296 -16 239 0 32 0 chr9 35595214 35595245 -106676199 + (TA)n Simple_repeat Simple_repeat 2 33 0 986 158 12 12 chr9 35595499 35595664 -106675780 - AluSg/x SINE Alu -12 298 134 2498 80 0 0 chr9 35595665 35595964 -106675480 - AluSc SINE Alu -10 299 1 311 298 7 21 chr9 35595979 35596120 -106675324 - L1ME3 LINE L1 -295 5867 5729 758 263 11 0 chr9 35596252 35596427 -106675017 - MIR SINE MIR -4 258 82 413 289 95 28 chr9 35596450 35596703 -106674741 + L2 LINE L2 2318 2587 -727 341 310 83 39 chr9 35596924 35597153 -106674291 + L2 LINE L2 3025 3263 -9 507 182 94 39 chr9 35597457 35597659 -106673785 + MER106B DNA MER1_type 30 1059 0 414 264 68 27 chr9 35599768 35599916 -106671528 - MIR SINE MIR -70 192 39 768 243 78 10 chr9 35601686 35601892 -106669552 - MIR SINE MIR 0 262 43 1765 161 0 56 chr9 35601963 35602135 -106669309 - AluJb SINE Alu -7 305 158 2302 107 0 3 chr9 35602135 35602433 -106669011 - AluSx SINE Alu -11 301 5 1765 161 0 56 chr9 35602433 35602583 -106668861 - AluJb SINE Alu -154 158 1 687 154 112 0 chr9 35602583 35602752 -106668692 + Charlie5 DNA MER1_type 2398 2585 -27 222 274 161 45 chr9 35602818 35602863 -106668581 - L2 LINE L2 -1451 1863 1825 2308 103 30 0 chr9 35602863 35603164 -106668280 + AluSx SINE Alu 1 310 -2 222 274 161 45 chr9 35603164 35603497 -106667947 - L2 LINE L2 -1489 1825 1441 2277 94 13 3 chr9 35603932 35604231 -106667213 + AluSg SINE Alu 1 302 -8 360 202 115 49 chr9 35604362 35604545 -106666899 + MER102b DNA MER1_type 147 341 0 243 276 126 0 chr9 35604706 35604793 -106666651 - L3 LINE CR1 -550 1027 930 334 305 42 0 chr9 35604907 35605002 -106666442 - MIR SINE MIR -56 206 108 2057 120 50 0 chr9 35605134 35605417 -106666027 + AluSx SINE Alu 1 297 -15 774 251 62 19 chr9 35605417 35605628 -106665816 + MIR SINE MIR 29 248 -14 2038 146 0 0 chr9 35606048 35606342 -106665102 + AluSx SINE Alu 1 294 -18 257 300 113 0 chr9 35606353 35606433 -106665011 - MIR SINE MIR -149 113 25 287 360 18 0 chr9 35606447 35606558 -106664886 - MIR SINE MIR -65 143 31 746 283 261 11 chr9 35606794 35607518 -106663926 + L2 LINE L2 1842 2746 -568 2545 94 0 0 chr9 35607589 35607898 -106663546 - AluSq SINE Alu -2 311 3 186 133 0 0 chr9 35608671 35608701 -106662743 + (TCTG)n Simple_repeat Simple_repeat 1 30 0 447 265 51 0 chr9 35608949 35609047 -106662397 + L2 LINE L2 3210 3312 -1 202 260 0 0 chr9 35609057 35609107 -106662337 + L2 LINE L2 3184 3233 -39 2401 88 3 3 chr9 35609258 35609563 -106661881 + AluSp SINE Alu 1 305 -8 219 326 156 39 chr9 35609675 35609922 -106661522 + L2 LINE L2 2899 3202 -111 1934 147 20 17 chr9 35609922 35610222 -106661222 + AluJb SINE Alu 1 301 -11 219 326 156 39 chr9 35610222 35610333 -106661111 + L2 LINE L2 3202 3299 -14 187 312 210 40 chr9 35611288 35611958 -106659486 - L2 LINE L2 -391 2923 2140 1083 147 0 23 chr9 35612063 35612240 -106659204 - AluJb SINE Alu -2 310 138 270 336 23 0 chr9 35612258 35612389 -106659055 + (CCAA)n Simple_repeat Simple_repeat 3 136 0 235 261 268 80 chr9 35612389 35612415 -106659029 - L2 LINE L2 0 3272 3252 1965 143 0 20 chr9 35612415 35612715 -106658729 + AluSx SINE Alu 1 294 -18 235 261 268 80 chr9 35612715 35612964 -106658480 - L2 LINE L2 -20 3252 2945 339 296 89 83 chr9 35613277 35613617 -106657827 - L1MEd LINE L1 -4971 1148 797 204 97 0 0 chr9 35613722 35613753 -106657691 + (CA)n Simple_repeat Simple_repeat 2 32 0 670 118 0 0 chr9 35613768 35613861 -106657583 - AluS SINE Alu -218 94 2 408 94 62 0 chr9 35613861 35613925 -106657519 + MSTB LTR MaLR 359 426 0 2879 210 63 20 chr9 35613927 35614756 -106656688 + L1MC4a LINE L1 6944 7807 -1 518 148 61 31 chr9 35614775 35614919 -106656525 + L1MA9 LINE L1 6158 6290 -1 23 54 0 0 chr9 35614921 35614958 -106656486 + AT_rich Low_complexity Low_complexity 1 37 0 309 283 85 9 chr9 35615102 35615208 -106656236 + MIR3 SINE MIR 95 208 0 2477 103 0 0 chr9 35615376 35615688 -106655756 - AluSx SINE Alu 0 312 1 2097 116 0 30 chr9 35616810 35617111 -106654333 - AluJo SINE Alu -20 292 1 2466 150 46 9 chr9 35617116 35617569 -106653875 - L1MB3 LINE L1 0 6183 5714 1284 154 50 141 chr9 35618230 35618627 -106652817 + MLT1A1 LTR MaLR 1 361 -4 197 368 141 37 chr9 35618749 35618991 -106652453 - L2 LINE L2 -20 3252 2986 * 290 262 12 60 chr9 35618983 35619067 -106652377 + L2 LINE L2 3193 3272 0 590 200 138 31 chr9 35619182 35619342 -106652102 + MER20 DNA MER1_type 40 216 -3 221 275 14 29 chr9 35619445 35619514 -106651930 - L2 LINE L2 0 3313 3246 1823 163 14 0 chr9 35619514 35619809 -106651635 - AluJo SINE Alu -13 299 1 2124 110 62 0 chr9 35620135 35620426 -106651018 + AluSp SINE Alu 1 309 -4 1173 130 25 0 chr9 35621219 35621381 -106650063 - AluSg/x SINE Alu -18 292 127 319 322 137 13 chr9 35621506 35621733 -106649711 - L2 LINE L2 -814 2500 2246 520 259 146 69 chr9 35621776 35622105 -106649339 - L2 LINE L2 -74 3239 2857 2053 114 0 81 chr9 35622105 35622437 -106649007 + AluSx SINE Alu 1 305 -7 520 259 146 69 chr9 35622437 35622536 -106648908 - L2 LINE L2 -456 2857 2767 255 125 0 0 chr9 35623281 35623321 -106648123 + (CA)n Simple_repeat Simple_repeat 1 40 0 294 306 45 8 chr9 35623748 35623882 -106647562 - MIR3 SINE MIR -69 139 1 2177 102 14 7 chr9 35625332 35625625 -106645819 - AluSx SINE Alu -17 295 1 233 294 28 46 chr9 35626178 35626287 -106645157 - L2 LINE L2 -493 2821 2715 312 287 183 60 chr9 35626928 35627294 -106644150 + HAL1 LINE L1 882 1292 -1215 180 0 0 0 chr9 35627442 35627462 -106643982 + (TA)n Simple_repeat Simple_repeat 1 20 0 1354 167 5 14 chr9 35627533 35627755 -106643689 - AluJo SINE Alu -92 220 1 4570 175 14 3 chr9 35627755 35628645 -106642799 - L1 LINE L1 -815 5331 4433 1292 113 15 49 chr9 35628645 35628678 -106642766 + AluY SINE Alu 101 134 -177 2606 61 0 6 chr9 35628678 35628989 -106642455 + AluY SINE Alu 1 309 -2 1292 113 15 49 chr9 35628989 35629159 -106642285 + AluY SINE Alu 134 297 -14 2103 112 0 33 chr9 35629300 35629603 -106641841 + AluSc SINE Alu 1 293 -16 2224 94 0 17 chr9 35629609 35629931 -106641513 + AluSx SINE Alu 3 319 0 715 196 49 98 chr9 35629980 35630184 -106641260 - AluJo SINE Alu -117 195 2 446 97 43 11 chr9 35630186 35630279 -106641165 - LTR23 LTR ERV1 -132 305 210 1362 112 0 5 chr9 35630284 35630472 -106640972 - AluSg/x SINE Alu -6 304 118 216 0 0 0 chr9 35630666 35630690 -106640754 + (CA)n Simple_repeat Simple_repeat 2 25 0 1806 173 0 26 chr9 35631721 35632027 -106639417 - AluJo SINE Alu -14 298 1 186 43 0 0 chr9 35632031 35632054 -106639390 + (TG)n Simple_repeat Simple_repeat 1 23 0 2203 107 10 0 chr9 35632122 35632413 -106639031 - AluSg SINE Alu -16 294 1 1409 161 44 4 chr9 35632415 35632689 -106638755 - L1MB2 LINE L1 -42 6129 5845 1196 136 0 23 chr9 35632701 35632878 -106638566 - AluSq SINE Alu -10 303 131 956 158 12 0 chr9 35632878 35633043 -106638401 - L1MB2 LINE L1 -348 5823 5657 1459 86 68 5 chr9 35633045 35633265 -106638179 - L1PA14 LINE L1 0 6161 5928 780 156 78 90 chr9 35633289 35633397 -106638047 + ORSL DNA AcHobo 23 131 -144 2020 154 3 0 chr9 35633397 35633695 -106637749 - AluSq SINE Alu -14 299 1 780 156 78 90 chr9 35633695 35633842 -106637602 + ORSL DNA AcHobo 131 275 0 2259 173 71 19 chr9 35634176 35634638 -106636806 + MER66B LTR ERV1 1 486 0 1759 99 0 0 chr9 35634666 35634889 -106636555 - AluSg/x SINE Alu -14 296 74 327 293 57 19 chr9 35634902 35635008 -106636436 - L1MC4 LINE L1 -138 7904 7795 410 225 105 43 chr9 35635096 35635305 -106636139 - L1MC5 LINE L1 -386 7575 7354 1668 171 68 10 chr9 35635314 35635449 -106635995 + AluJb SINE Alu 1 127 -185 2522 62 0 0 chr9 35635449 35635741 -106635703 + AluY SINE Alu 2 293 -18 1668 171 68 10 chr9 35635741 35635898 -106635546 + AluJb SINE Alu 127 310 -2 2195 135 0 0 chr9 35635931 35636227 -106635217 + AluSx SINE Alu 1 296 -16 2279 110 0 13 chr9 35636229 35636539 -106634905 + AluSx SINE Alu 1 306 -6 2304 81 0 3 chr9 35636558 35636880 -106634564 - AluY SINE Alu 0 321 1 1766 130 72 0 chr9 35636884 35637161 -106634283 - AluJo SINE Alu -15 297 1 310 350 24 0 chr9 35637222 35637345 -106634099 - L1MC4 LINE L1 -593 7449 7324 473 281 114 19 chr9 35637690 35637900 -106633544 + MIR SINE MIR 13 242 -20 181 264 42 56 chr9 35638331 35638403 -106633041 + L2 LINE L2 3197 3267 -5 687 180 16 8 chr9 35638699 35638827 -106632617 - AluJo SINE Alu -171 141 13 1978 135 0 10 chr9 35638859 35639148 -106632296 - AluSx SINE Alu -26 286 1 213 60 20 40 chr9 35639328 35639378 -106632066 + (CAAAAA)n Simple_repeat Simple_repeat 6 54 0 499 286 160 63 chr9 35639577 35640245 -106631199 + L2 LINE L2 2538 3271 -1 1837 125 114 0 chr9 35640270 35640550 -106630894 - AluSq SINE Alu 0 313 2 394 137 39 108 chr9 35640749 35640811 -106630633 - MER97a DNA MER1_type? -722 172 118 2136 41 107 7 chr9 35640811 35641082 -106630362 - AluY SINE Alu -13 298 1 394 137 39 108 chr9 35641082 35641121 -106630323 - MER97a DNA MER1_type? -776 118 78 263 149 164 30 chr9 35641126 35641193 -106630251 + U2 snRNA snRNA 1 76 -112 * 299 196 11 54 chr9 35641157 35641249 -106630195 - MER97b DNA MER1_type? -963 90 3 214 331 107 41 chr9 35641499 35641620 -106629824 + MIR3 SINE MIR 48 176 -32 927 118 0 0 chr9 35642051 35642170 -106629274 - AluSq/x SINE Alu -194 119 1 215 188 350 12 chr9 35643729 35643809 -106627635 + MIR SINE MIR 21 127 -81 181 254 175 71 chr9 35644887 35645013 -106626431 - L2 LINE L2 -5 3267 3129 463 281 114 19 chr9 35645390 35645600 -106625844 - MIR SINE MIR -20 242 13 256 130 19 19 chr9 35646129 35646183 -106625261 + Alu SINE Alu 1 54 -247 934 173 6 46 chr9 35646480 35646653 -106624791 + FRAM SINE Alu 1 166 0 266 242 45 15 chr9 35647514 35647580 -106623864 - L2 LINE L2 -6 3307 3240 301 324 97 14 chr9 35647848 35647993 -106623451 - MIR SINE MIR 0 262 106 263 276 19 67 chr9 35648100 35648205 -106623239 + MIR SINE MIR 68 167 -95 537 235 131 7 chr9 35648340 35648493 -106622951 + MIR SINE MIR 90 261 -1 21 0 0 0 chr9 35648642 35648663 -106622781 + AT_rich Low_complexity Low_complexity 1 21 0 1939 111 61 14 chr9 35649154 35649433 -106622011 + AluSg SINE Alu 2 293 -17 398 230 47 37 chr9 35650221 35650361 -106621083 - L1MC4 LINE L1 -1339 6703 6610 346 247 90 17 chr9 35650249 35650393 -106621051 + L1MCa LINE L1 1981 2110 -4316 * 2196 117 3 3 chr9 35650754 35651052 -106620392 + AluSx SINE Alu 1 298 -14 304 183 0 14 chr9 35651053 35651124 -106620320 + MER53 DNA DNA 120 189 0 2610 68 0 0 chr9 35651165 35651472 -106619972 + AluY SINE Alu 1 307 -4 2306 121 0 3 chr9 35652003 35652316 -106619128 + AluSq SINE Alu 1 312 -1 1990 134 7 3 chr9 35652660 35652978 -106618466 + AluSx SINE Alu 1 319 0 190 250 18 54 chr9 35653055 35653111 -106618333 - MIR3 SINE MIR -11 197 144 1779 125 0 0 chr9 35653286 35653534 -106617910 + AluSx SINE Alu 40 287 -25 202 232 18 54 chr9 35653625 35653681 -106617763 - MIR3 SINE MIR -11 197 144 1920 142 0 10 chr9 35653814 35654109 -106617335 - AluSx SINE Alu -20 292 1 216 0 0 0 chr9 35654275 35654299 -106617145 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2080 154 0 0 chr9 35654329 35654634 -106616810 - AluSx SINE Alu -7 305 1 1161 127 0 0 chr9 35654674 35654831 -106616613 + FRAM SINE Alu 5 161 -15 2255 68 3 10 chr9 35655508 35655800 -106615644 - AluSc SINE Alu -19 290 1 459 223 117 0 chr9 35656127 35656221 -106615223 - L2 LINE L2 -10 3303 3199 21 0 0 0 chr9 35656291 35656312 -106615132 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 35656919 35656940 -106614504 + AT_rich Low_complexity Low_complexity 1 21 0 2321 101 0 3 chr9 35657259 35657624 -106613820 + AluSg SINE Alu 1 364 0 1635 192 3 31 chr9 35657644 35657962 -106613482 + AluJo SINE Alu 1 309 -3 1615 205 0 7 chr9 35658024 35658321 -106613123 + AluJb SINE Alu 1 295 -17 965 227 14 18 chr9 35658639 35658859 -106612585 - MER20 DNA MER1_type 0 219 1 2368 74 7 7 chr9 35659266 35659575 -106611869 + AluSc SINE Alu 1 309 0 2216 116 0 13 chr9 35660713 35661024 -106610420 + AluSg SINE Alu 1 307 -3 2094 130 3 0 chr9 35661290 35661582 -106609862 + AluSq SINE Alu 1 293 -20 874 121 0 16 chr9 35661653 35661777 -106609667 - FLAM_C SINE Alu -16 127 6 343 280 126 0 chr9 35662728 35662910 -106608534 - L1M4 LINE L1 -1892 4254 4050 44 46 0 0 chr9 35662949 35663014 -106608430 + AT_rich Low_complexity Low_complexity 1 65 0 1527 184 121 40 chr9 35663077 35663474 -106607970 - LTR32 LTR ERVL -7 464 36 2037 141 3 0 chr9 35663612 35663909 -106607535 + AluSx SINE Alu 1 298 -14 275 233 56 22 chr9 35663925 35664015 -106607429 + L1ME LINE L1 5425 5517 -645 391 279 61 20 chr9 35664410 35664557 -106606887 - MIR SINE MIR -51 211 59 1616 177 45 10 chr9 35665550 35665838 -106605606 + AluJo SINE Alu 1 298 -14 6178 129 19 16 chr9 35666359 35667326 -106604118 - LTR5 LTR ERVK 0 969 1 24 32 0 0 chr9 35667714 35667745 -106603699 + AT_rich Low_complexity Low_complexity 1 31 0 267 294 8 8 chr9 35668113 35668232 -106603212 + L1M4 LINE L1 3805 3923 -2223 1552 160 31 35 chr9 35668297 35668584 -106602860 - AluJo SINE Alu -26 286 1 2005 153 3 6 chr9 35668657 35668970 -106602474 + AluSx SINE Alu 1 312 0 203 61 30 0 chr9 35669246 35669279 -106602165 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1862 125 84 0 chr9 35669401 35669688 -106601756 + AluSq SINE Alu 1 311 -2 1947 156 18 0 chr9 35669726 35670060 -106601384 - L1PB4 LINE L1 -2 6154 5815 273 151 19 0 chr9 35670072 35670125 -106601319 - L1PA16 LINE L1 -17 6149 6096 651 132 26 0 chr9 35670125 35670239 -106601205 - L1PB4 LINE L1 -327 5829 5713 383 184 46 0 chr9 35670247 35670334 -106601110 + L1PB4 LINE L1 5621 5711 -445 289 115 0 19 chr9 35670404 35670456 -106600988 + Alu SINE Alu 249 299 -2 1175 293 29 12 chr9 35670470 35671119 -106600325 + L1M4 LINE L1 3308 3967 -2179 524 239 72 61 chr9 35671116 35671230 -106600214 + L1MEc LINE L1 1905 2016 -4380 * 2412 84 0 0 chr9 35671230 35671528 -106599916 + AluY SINE Alu 1 298 -13 258 32 0 0 chr9 35671528 35671559 -106599885 + (TA)n Simple_repeat Simple_repeat 1 31 0 524 239 72 61 chr9 35671559 35671596 -106599848 + L1MEc LINE L1 2016 2051 -4345 2177 97 10 13 chr9 35671596 35671894 -106599550 - AluSx SINE Alu -15 297 1 524 239 72 61 chr9 35671894 35672100 -106599344 + L1MEc LINE L1 2051 2268 -4128 1396 192 7 46 chr9 35672112 35672393 -106599051 + AluJo SINE Alu 13 282 -30 494 284 85 3 chr9 35672446 35672752 -106598692 + L1MEc LINE L1 2248 2578 -3637 569 200 19 76 chr9 35672770 35672980 -106598464 + L1MEc LINE L1 2757 2954 -3261 22 56 0 0 chr9 35673008 35673044 -106598400 + AT_rich Low_complexity Low_complexity 1 36 0 2870 189 62 16 chr9 35673044 35673736 -106597708 - L1MB4 LINE L1 -52 6128 5405 1980 287 43 10 chr9 35673748 35674724 -106596720 - L1M4 LINE L1 -2647 3499 2492 505 175 125 50 chr9 35674725 35674885 -106596559 - L1MA9 LINE L1 -3 6309 6138 342 300 96 112 chr9 35674958 35675502 -106595942 + L1M2 LINE L1 870 1404 -5445 34 42 0 0 chr9 35677216 35677264 -106594180 + AT_rich Low_complexity Low_complexity 1 48 0 27 29 0 0 chr9 35677295 35677329 -106594115 + AT_rich Low_complexity Low_complexity 1 34 0 396 278 62 6 chr9 35677584 35677760 -106593684 + L1ME LINE L1 5491 5676 -445 21 57 0 0 chr9 35678037 35678072 -106593372 + AT_rich Low_complexity Low_complexity 1 35 0 231 61 0 0 chr9 35678789 35678822 -106592622 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 2245 91 0 0 chr9 35678824 35679109 -106592335 - AluSg SINE Alu -25 285 1 1516 208 3 7 chr9 35679507 35679801 -106591643 + AluJo SINE Alu 1 293 -19 533 295 111 43 chr9 35679803 35680041 -106591403 - MIR SINE MIR -8 254 4 244 336 46 30 chr9 35681670 35681801 -106589643 - MER5B DNA MER1_type 0 178 46 450 132 0 0 chr9 35681814 35681882 -106589562 + FRAM/FAM SINE Alu 1 68 -107 698 79 0 30 chr9 35681882 35681983 -106589461 + AluY SINE Alu 30 127 -184 189 0 0 0 chr9 35682017 35682038 -106589406 + (A)n Simple_repeat Simple_repeat 1 21 0 387 282 40 16 chr9 35683033 35683157 -106588287 + MER102b DNA MER1_type 214 340 -1 2284 110 0 0 chr9 35683442 35683741 -106587703 + AluY SINE Alu 1 299 -12 21 36 0 0 chr9 35683980 35684008 -106587436 + AT_rich Low_complexity Low_complexity 1 28 0 230 313 170 9 chr9 35684523 35684635 -106586809 - L2 LINE L2 0 3272 3143 408 88 0 0 chr9 35685355 35685412 -106586032 + (TTA)n Simple_repeat Simple_repeat 3 59 0 195 100 0 0 chr9 35685413 35685443 -106586001 + (TTG)n Simple_repeat Simple_repeat 2 31 0 352 206 243 0 chr9 35686317 35686424 -106585020 - AluJb SINE Alu -169 133 1 2274 77 0 7 chr9 35686764 35687076 -106584368 - AluY SINE Alu 0 310 1 308 88 47 53 chr9 35687155 35687326 -106584118 + (TTATA)n Simple_repeat Simple_repeat 5 174 0 196 324 64 52 chr9 35687943 35688116 -106583328 - MIR SINE MIR -47 215 41 2258 114 0 0 chr9 35688504 35688801 -106582643 + AluSx SINE Alu 1 297 -15 40 21 0 0 chr9 35688837 35688884 -106582560 + AT_rich Low_complexity Low_complexity 1 47 0 2168 193 9 11 chr9 35689144 35689579 -106581865 - Tigger2a DNA MER2_type 0 434 1 1984 125 17 0 chr9 35689946 35690234 -106581210 + AluSx SINE Alu 1 293 -19 26 0 0 0 chr9 35690299 35690325 -106581119 + AT_rich Low_complexity Low_complexity 1 26 0 244 217 67 0 chr9 35691250 35691310 -106580134 - MLT1L LTR MaLR -6 609 546 450 284 118 48 chr9 35691355 35691542 -106579902 - MLT1L LTR MaLR -167 448 229 2061 142 0 0 chr9 35691542 35691837 -106579607 - AluSc SINE Alu -14 295 1 450 284 118 48 chr9 35691837 35691962 -106579482 - MLT1L LTR MaLR -386 229 114 835 195 0 161 chr9 35692138 35692399 -106579045 - MER58A DNA MER1_type -2 222 4 207 167 0 0 chr9 35692665 35692707 -106578737 + A-rich Low_complexity Low_complexity 1 42 0 1063 239 39 28 chr9 35692911 35693195 -106578249 + AluJo SINE Alu 2 288 -14 186 103 0 0 chr9 35693203 35693232 -106578212 + (TAAAA)n Simple_repeat Simple_repeat 3 31 0 193 287 147 39 chr9 35693458 35693587 -106577857 + L2 LINE L2 2912 3054 -218 205 196 0 22 chr9 35693615 35693661 -106577783 + L2 LINE L2 3264 3308 -5 1555 221 30 0 chr9 35693860 35694163 -106577281 - AluJo SINE Alu 0 312 1 2275 100 3 0 chr9 35696047 35696337 -106575107 + AluSp SINE Alu 3 293 -20 210 375 9 18 chr9 35698247 35698359 -106573085 + MIR3 SINE MIR 88 198 -10 191 164 0 148 chr9 35698810 35698871 -106572573 + MIR SINE MIR 175 226 -36 396 0 0 0 chr9 35699171 35699215 -106572229 + (TG)n Simple_repeat Simple_repeat 2 45 0 798 213 74 27 chr9 35700455 35700713 -106570731 + L1MB8 LINE L1 5903 6172 -6 410 306 54 0 chr9 35701497 35701644 -106569800 - L2 LINE L2 -438 2876 2722 2275 205 13 27 chr9 35702718 35703245 -106568199 - L1MB8 LINE L1 -6 6172 5653 227 341 47 0 chr9 35704013 35704098 -106567346 + MER91C DNA MER1_type 18 106 -34 180 259 37 0 chr9 35704258 35704312 -106567132 - MIR SINE MIR -2 260 205 854 263 30 0 chr9 35704332 35704530 -106566914 - MIR SINE MIR -24 238 35 1427 181 3 24 chr9 35704573 35704866 -106566578 + AluJo SINE Alu 6 292 -20 1969 137 20 0 chr9 35705285 35705591 -106565853 + AluSx SINE Alu 1 312 0 499 83 48 0 chr9 35705617 35705701 -106565743 + GA-rich Low_complexity Low_complexity 2 89 0 936 139 0 7 chr9 35706010 35706161 -106565283 + AluSg SINE Alu 1 150 -160 695 248 32 50 chr9 35706161 35706443 -106565001 - LTR4 LTR ERV1 -2 594 318 22 0 0 0 chr9 35707664 35707686 -106563758 + AT_rich Low_complexity Low_complexity 1 22 0 1881 129 38 0 chr9 35707747 35708034 -106563410 - AluSg SINE Alu -6 304 7 392 129 0 14 chr9 35708315 35708385 -106563059 + MER34C LTR ERV1 423 491 -94 1951 144 6 3 chr9 35708996 35709308 -106562136 + AluSq SINE Alu 1 313 0 3205 121 29 0 chr9 35709696 35710183 -106561261 - L1PA10 LINE L1 -11 6157 5657 2385 225 24 84 chr9 35710246 35711045 -106560399 - MER4E LTR ERV1 -3 776 26 21 36 0 0 chr9 35711141 35711169 -106560275 + AT_rich Low_complexity Low_complexity 1 28 0 1116 221 75 12 chr9 35711279 35711600 -106559844 - L1MB8 LINE L1 -5 6173 5833 2136 156 63 14 chr9 35711600 35712029 -106559415 - MER61C LTR ERV1 0 434 1 2599 192 34 39 chr9 35712029 35712168 -106559276 - L1MB8 LINE L1 -342 5836 5698 2104 96 0 20 chr9 35712168 35712461 -106558983 + AluSg SINE Alu 1 287 -23 2599 192 34 39 chr9 35712461 35713396 -106558048 - L1MB8 LINE L1 -480 5698 4766 785 280 114 36 chr9 35714730 35715103 -106556341 - MLT1G1 LTR MaLR -34 561 45 1224 161 57 36 chr9 35715139 35715419 -106556025 - L1MA5 LINE L1 -6 6294 6009 1119 224 27 8 chr9 35715492 35715751 -106555693 - AluJo SINE Alu -48 264 1 3210 194 50 28 chr9 35715752 35716846 -106554598 - L1MA5 LINE L1 -354 5946 4808 1427 189 7 33 chr9 35716959 35717261 -106554183 - AluJo SINE Alu -17 295 2 429 231 0 0 chr9 35719708 35719812 -106551632 - L1MA9 LINE L1 -46 6266 6163 2051 124 10 0 chr9 35720751 35721049 -106550395 - AluSg SINE Alu -9 301 1 1205 119 0 0 chr9 35721241 35721409 -106550035 + AluSq SINE Alu 1 168 -145 2737 160 24 26 chr9 35721413 35721957 -106549487 + L1PA16 LINE L1 5624 6166 0 2199 107 0 0 chr9 35722125 35722425 -106549019 - AluSc SINE Alu -9 300 1 24 32 0 0 chr9 35722703 35722734 -106548710 + AT_rich Low_complexity Low_complexity 1 31 0 215 332 145 25 chr9 35723099 35723380 -106548064 + L2 LINE L2 2735 3045 -227 901 188 41 9 chr9 35724245 35724463 -106546981 - L1MC4 LINE L1 -681 7361 7137 749 232 33 11 chr9 35724505 35724686 -106546758 - L1MC4 LINE L1 -1039 7003 6819 254 300 0 18 chr9 35725246 35725347 -106546097 - HSAT5 Satellite Satellite -7 99 1 296 211 0 28 chr9 35725373 35725444 -106546000 - HSAT5 Satellite Satellite -1 85 17 264 231 13 26 chr9 35725633 35725711 -106545733 - HSAT5 Satellite Satellite -1 85 9 232 259 12 24 chr9 35725749 35725834 -106545610 - HSAT5 Satellite Satellite -1 85 2 283 243 14 0 chr9 35726209 35726279 -106545165 + (CA)n Simple_repeat Simple_repeat 2 72 0 1823 138 83 39 chr9 35726511 35726947 -106544497 - SN5 Other centromeric 0 455 1 777 221 88 23 chr9 35728868 35729085 -106542359 + MSTA LTR MaLR 155 385 -43 1497 121 26 0 chr9 35729096 35729328 -106542116 + MSTA-int LTR MaLR 13 250 -1401 1169 188 37 12 chr9 35729325 35729570 -106541874 + MSTA-int LTR MaLR 1401 1651 0 * 1557 222 27 29 chr9 35729570 35729944 -106541500 + MSTA LTR MaLR 1 373 -55 461 238 154 0 chr9 35729972 35730115 -106541329 - MST-int LTR MaLR -981 670 506 * 463 226 0 0 chr9 35730112 35730214 -106541230 + MSTA-int LTR MaLR 28 129 -1522 301 257 0 30 chr9 35730237 35730338 -106541106 + (GGGTG)n Simple_repeat Simple_repeat 3 100 0 293 130 22 0 chr9 35730345 35730391 -106541053 + MSTA-int LTR MaLR 921 967 -613 * 466 186 54 47 chr9 35730379 35730508 -106540936 - THE1-int LTR MaLR -389 1191 1062 240 119 0 71 chr9 35730495 35730537 -106540907 - MST-int LTR MaLR -637 1014 976 * 1172 209 72 7 chr9 35730542 35730834 -106540610 + MSTA LTR MaLR 66 376 -52 499 221 148 10 chr9 35730850 35731002 -106540442 - MST-int LTR MaLR -963 661 466 * 5852 229 76 19 chr9 35731000 35732536 -106538908 + MSTA-int LTR MaLR 28 1651 0 281 202 81 50 chr9 35732538 35732637 -106538807 + MSTA LTR MaLR 3 104 -324 323 258 112 0 chr9 35732677 35732766 -106538678 + MSTA LTR MaLR 57 155 -273 1336 229 3 44 chr9 35732773 35733114 -106538330 + MSTA-int LTR MaLR 1318 1644 -7 395 188 20 20 chr9 35733124 35733225 -106538219 + MSTA LTR MaLR 4 104 -324 292 196 18 0 chr9 35733303 35733359 -106538085 + THE1-int LTR MaLR 911 967 -613 * 691 214 189 40 chr9 35733347 35733595 -106537849 - THE1-int LTR MaLR -389 1191 907 1180 197 82 24 chr9 35733599 35733893 -106537551 + MSTA LTR MaLR 66 376 -52 390 244 168 0 chr9 35733928 35734059 -106537385 - MST-int LTR MaLR -992 659 507 * 6815 214 53 17 chr9 35734056 35735621 -106535823 + MSTA-int LTR MaLR 27 1648 -3 403 237 10 0 chr9 35735623 35735720 -106535724 + MSTA LTR MaLR 3 100 -328 403 198 108 18 chr9 35735765 35735876 -106535568 + MSTA LTR MaLR 58 178 -250 1355 214 6 42 chr9 35735876 35736212 -106535232 + MSTA-int LTR MaLR 1328 1651 0 457 184 11 0 chr9 35736212 35736299 -106535145 + MSTA LTR MaLR 1 88 -340 292 196 18 0 chr9 35736405 35736461 -106534983 + THE1-int LTR MaLR 911 967 -613 * 926 201 189 20 chr9 35736449 35736693 -106534751 - THE1-int LTR MaLR -389 1191 907 947 220 82 25 chr9 35736698 35736980 -106534464 + MSTA LTR MaLR 77 374 -54 541 189 156 10 chr9 35736998 35737149 -106534295 - MST-int LTR MaLR -963 661 466 * 6719 212 50 24 chr9 35737147 35738730 -106532714 + MSTA-int LTR MaLR 28 1651 0 421 232 10 0 chr9 35738730 35738829 -106532615 + MSTA LTR MaLR 1 100 -328 343 203 41 106 chr9 35738851 35738974 -106532470 + MSTA LTR MaLR 57 171 -257 989 252 16 38 chr9 35738983 35739297 -106532147 + MSTA-int LTR MaLR 1345 1651 0 436 200 11 0 chr9 35739301 35739391 -106532053 + MSTA LTR MaLR 5 95 -333 232 200 36 0 chr9 35739491 35739546 -106531898 + MST-int LTR MaLR 979 1035 -616 * 826 198 194 22 chr9 35739544 35739776 -106531668 - THE1-int LTR MaLR -402 1178 907 996 243 56 10 chr9 35739780 35740068 -106531376 + MSTA LTR MaLR 76 376 -52 498 219 161 7 chr9 35740102 35740239 -106531205 - MST-int LTR MaLR -990 661 504 * 6437 215 56 30 chr9 35740234 35741817 -106529627 + MSTA-int LTR MaLR 28 1651 0 377 247 10 0 chr9 35741819 35741916 -106529528 + MSTA LTR MaLR 3 100 -328 356 262 107 0 chr9 35741961 35742064 -106529380 + MSTA LTR MaLR 58 171 -257 1158 258 0 32 chr9 35742076 35742390 -106529054 + MSTA-int LTR MaLR 1347 1650 -1 433 198 10 0 chr9 35742391 35742487 -106528957 + MSTA LTR MaLR 1 97 -331 302 177 65 0 chr9 35742578 35742640 -106528804 + THE1-int LTR MaLR 902 967 -613 * 987 176 189 21 chr9 35742638 35742871 -106528573 - THE1-int LTR MaLR -402 1178 907 1070 224 86 10 chr9 35742877 35743167 -106528277 + MSTA LTR MaLR 65 376 -52 472 225 159 14 chr9 35743201 35743339 -106528105 - MST-int LTR MaLR -990 661 504 * 6177 231 49 30 chr9 35743334 35744928 -106526516 + MSTA-int LTR MaLR 28 1651 0 422 229 10 0 chr9 35744928 35745024 -106526420 + MSTA LTR MaLR 1 97 -331 408 252 93 22 chr9 35745075 35745214 -106526230 + MSTA LTR MaLR 60 208 -220 1110 191 58 15 chr9 35745218 35745491 -106525953 + MSTA-int LTR MaLR 1293 1651 0 465 191 32 0 chr9 35745491 35745585 -106525859 + MSTA LTR MaLR 1 97 -331 200 235 12 49 chr9 35745586 35745667 -106525777 + (GGGTG)n Simple_repeat Simple_repeat 5 82 0 277 152 39 18 chr9 35745682 35745738 -106525706 + MSTA-int LTR MaLR 921 967 -613 * 824 225 189 20 chr9 35745726 35745970 -106525474 - THE1-int LTR MaLR -389 1191 907 869 232 98 12 chr9 35745974 35746228 -106525216 + MSTA LTR MaLR 76 351 -77 443 241 165 8 chr9 35746268 35746401 -106525043 - MST-int LTR MaLR -994 657 504 * 6219 231 50 30 chr9 35746396 35747987 -106523457 + MSTA-int LTR MaLR 28 1651 0 353 229 83 21 chr9 35748081 35748177 -106523267 + MSTA LTR MaLR 58 159 -269 1542 200 0 41 chr9 35748187 35748532 -106522912 + MSTA-int LTR MaLR 1321 1651 0 488 189 11 0 chr9 35748532 35748627 -106522817 + MSTA LTR MaLR 1 96 -330 291 179 18 0 chr9 35748720 35748776 -106522668 + THE1-int LTR MaLR 911 967 -613 * 627 264 178 21 chr9 35748764 35749006 -106522438 - MST-int LTR MaLR -395 1256 977 637 258 81 10 chr9 35749012 35749210 -106522234 + MSTA LTR MaLR 76 287 -141 304 195 20 27 chr9 35749200 35749286 -106522158 - HSAT5 Satellite Satellite -1 85 1 * 230 217 58 29 chr9 35749403 35749472 -106521972 - HSAT5 Satellite Satellite -15 71 1 354 232 0 12 chr9 35749548 35749630 -106521814 - HSAT5 Satellite Satellite -3 83 3 479 175 15 19 chr9 35749858 35750032 -106521412 - HSAT5 Satellite Satellite -1 173 1 288 0 0 0 chr9 35751708 35751740 -106519704 + (TCTCCC)n Simple_repeat Simple_repeat 2 33 0 7221 44 2 33 chr9 35751740 35753327 -106518117 + SVA Other Other 1 1382 -4 438 303 117 11 chr9 35756146 35756410 -106515034 + L2 LINE L2 2998 3289 -24 1566 186 226 3 chr9 35756453 35756795 -106514649 + LTR46 LTR ERV1 1 436 -24 609 27 0 0 chr9 35756795 35756870 -106514574 + (TG)n Simple_repeat Simple_repeat 2 76 0 1566 186 226 3 chr9 35756870 35756903 -106514541 + LTR46 LTR ERV1 436 460 0 407 289 18 9 chr9 35756914 35757028 -106514416 - MIR SINE MIR -116 146 32 1875 162 30 0 chr9 35757208 35757511 -106513933 - AluSx SINE Alu 0 312 1 724 139 0 10 chr9 35757536 35757637 -106513807 - AluSg/x SINE Alu -18 294 195 1765 182 21 15 chr9 35757637 35757972 -106513472 + L1MA9 LINE L1 5819 6155 -157 959 103 0 7 chr9 35757976 35758091 -106513353 + AluSg/x SINE Alu 172 287 -25 814 122 61 14 chr9 35758091 35758238 -106513206 + L1MA9 LINE L1 6159 6312 0 959 103 0 7 chr9 35758238 35758258 -106513186 + AluSg/x SINE Alu 287 306 -6 2331 95 0 10 chr9 35758475 35758780 -106512664 - AluY SINE Alu -9 302 1 1301 281 77 47 chr9 35759101 35760157 -106511287 + L2 LINE L2 2224 3311 -2 2110 227 49 29 chr9 35760772 35761455 -106509989 + L1M3a LINE L1 771 1523 -4780 1990 222 113 63 chr9 35761501 35762411 -106509033 + L1ME3A LINE L1 4377 5332 -814 453 36 0 0 chr9 35762453 35762508 -106508936 + (CA)n Simple_repeat Simple_repeat 2 56 0 422 207 37 0 chr9 35762681 35762763 -106508681 + MLT1E2 LTR MaLR 106 190 -436 1418 212 146 7 chr9 35762783 35763188 -106508256 - L1ME LINE L1 -370 5794 5334 301 241 108 0 chr9 35763991 35764074 -106507370 - MIR SINE MIR -109 153 62 233 114 57 0 chr9 35765889 35765924 -106505520 - Alu SINE Alu -261 42 6 323 374 15 10 chr9 35765937 35766132 -106505312 - L1MEc LINE L1 -3875 2521 2326 1830 291 55 15 chr9 35767029 35767616 -106503828 - MLT2E LTR ERVL -18 610 1 395 236 0 0 chr9 35767624 35767696 -106503748 - Tigger5 DNA MER2_type 0 2323 2252 293 161 0 54 chr9 35767691 35767747 -106503697 + Tigger5 DNA MER2_type 2267 2319 -4 * 341 174 145 14 chr9 35767748 35767817 -106503627 - Tigger5 DNA MER2_type -2245 78 1 2296 79 3 3 chr9 35768877 35769168 -106502276 - AluSg SINE Alu -14 296 6 209 422 44 0 chr9 35770270 35770360 -106501084 + MIR3 SINE MIR 9 102 -106 846 262 96 62 chr9 35770956 35771603 -106499841 + L1ME3A LINE L1 5316 5954 -216 1066 224 9 9 chr9 35771653 35771863 -106499581 - MER63A DNA MER1_type 0 210 1 387 0 0 0 chr9 35773110 35773153 -106498291 + (CA)n Simple_repeat Simple_repeat 2 44 0 2454 62 0 0 chr9 35773204 35773493 -106497951 - AluY SINE Alu -22 289 1 180 378 54 43 chr9 35774040 35774225 -106497219 - L2 LINE L2 -343 2971 2785 2562 189 39 20 chr9 35774361 35774870 -106496574 - MER34 LTR ERV1 0 542 24 221 266 70 113 chr9 35774970 35775271 -106496173 - L2 LINE L2 -806 2508 2221 1304 108 0 5 chr9 35776840 35777025 -106494419 + AluSg/x SINE Alu 115 298 -14 2207 69 28 14 chr9 35777031 35777320 -106494124 + AluSx SINE Alu 5 297 -15 620 299 96 37 chr9 35777325 35777598 -106493846 + L1ME3 LINE L1 4497 4752 -1410 2606 48 0 3 chr9 35777598 35777908 -106493536 + AluY SINE Alu 1 309 -2 620 299 96 37 chr9 35777908 35779009 -106492435 + L1ME3 LINE L1 4752 5951 -211 1955 115 14 7 chr9 35779298 35779607 -106491837 + AluSx SINE Alu 1 312 0 5384 32 3 2 chr9 35779748 35780347 -106491097 + L1PA7 LINE L1 5545 6144 -10 282 302 7 43 chr9 35781730 35781869 -106489575 - L1ME1 LINE L1 -25 6141 6008 * 308 212 35 0 chr9 35781860 35781945 -106489499 - L1M4 LINE L1 -1637 4509 4422 466 225 50 33 chr9 35782438 35782558 -106488886 + L1MC1 LINE L1 6212 6333 0 216 184 0 20 chr9 35782999 35783048 -106488396 + (ATG)n Simple_repeat Simple_repeat 1 48 0 1182 201 78 107 chr9 35783308 35783831 -106487613 + Charlie4a DNA MER1_type 1 508 0 306 169 0 0 chr9 35783985 35784050 -106487394 + CT-rich Low_complexity Low_complexity 2 66 0 1978 23 0 0 chr9 35784203 35784421 -106487023 + L1PA4 LINE L1 5930 6147 -8 642 289 95 9 chr9 35784642 35784874 -106486570 - MIR SINE MIR 0 262 11 199 280 0 0 chr9 35785180 35785230 -106486214 + MIR SINE MIR 96 145 -63 276 238 83 48 chr9 35786161 35786245 -106485199 - L2 LINE L2 -299 2973 2887 402 268 143 37 chr9 35787230 35787551 -106483893 + L1ME3A LINE L1 4740 5094 -1052 24 0 0 0 chr9 35787732 35787756 -106483688 + AT_rich Low_complexity Low_complexity 1 24 0 1012 276 88 24 chr9 35787849 35788397 -106483047 + L1ME3A LINE L1 5369 5951 -219 274 333 30 12 chr9 35791185 35791353 -106480091 - L1P LINE L1 -727 5424 5254 475 319 40 101 chr9 35792491 35793471 -106477973 + L1MEc LINE L1 70 989 -5407 1477 238 105 105 chr9 35793478 35793780 -106477664 + L1M4 LINE L1 3217 3518 -2628 10000 154 20 9 chr9 35793780 35796358 -106475086 + L1PA10 LINE L1 3544 6157 -11 1477 238 105 105 chr9 35796358 35797402 -106474042 + L1M4 LINE L1 3517 4563 -1583 692 259 26 22 chr9 35797397 35797629 -106473815 + L1M4 LINE L1 4901 5133 -1013 * 2609 35 0 16 chr9 35798466 35798782 -106472662 + AluY SINE Alu 1 311 0 328 260 24 59 chr9 35798819 35798988 -106472456 + L1MC5 LINE L1 7769 7931 -30 3621 121 40 9 chr9 35799084 35799661 -106471783 + LTR1B LTR ERV1 1 595 -231 632 195 0 16 chr9 35799674 35799802 -106471642 + LTR1B LTR ERV1 701 826 0 288 326 22 56 chr9 35802423 35802601 -106468843 + L2 LINE L2 2257 2428 -886 645 261 36 40 chr9 35802769 35802991 -106468453 - LTR16A LTR ERVL -116 334 114 204 388 20 13 chr9 35803039 35803191 -106468253 + L2 LINE L2 2544 2696 -618 4257 142 7 36 chr9 35803415 35804112 -106467332 - L1PA16 LINE L1 -3 6163 5487 322 148 6 15 chr9 35804278 35804360 -106467084 - L1PA15 LINE L1 -1 6164 6087 5816 166 20 7 chr9 35804356 35805589 -106465855 - L1PA15 LINE L1 -334 5831 4569 8894 106 18 5 chr9 35805589 35806859 -106464585 + HSMAR1 DNA Mariner 1 1287 0 5816 166 20 7 chr9 35806859 35807368 -106464076 - L1PA15 LINE L1 -1596 4569 4068 22 35 0 0 chr9 35811251 35811280 -106460164 + AT_rich Low_complexity Low_complexity 1 29 0 1117 116 111 0 chr9 35811308 35811497 -106459947 - MER2 DNA MER2_type -135 210 1 255 222 0 111 chr9 35813167 35813266 -106458178 - MIR SINE MIR 0 262 175 208 287 69 46 chr9 35813307 35813394 -106458050 + L2 LINE L2 2947 3035 -237 1790 163 48 15 chr9 35815680 35816012 -106455432 - MER2 DNA MER2_type -1 343 1 1263 255 30 34 chr9 35816780 35817003 -106454441 - L1MB8 LINE L1 -3 6175 5953 2111 93 61 4 chr9 35817003 35817283 -106454161 - AluY SINE Alu -15 296 1 1263 255 30 34 chr9 35817283 35817557 -106453887 - L1MB8 LINE L1 -225 5953 5680 37575 75 6 8 chr9 35817568 35818607 -106452837 + L1PA6 LINE L1 11 1051 -5103 10278 51 72 8 chr9 35818607 35819907 -106451537 + SVA Other Other 1 1383 -3 37575 75 6 8 chr9 35819907 35825026 -106446418 + L1PA6 LINE L1 1051 6154 0 1303 232 78 33 chr9 35825035 35825882 -106445562 - L1MB8 LINE L1 -481 5685 4806 21 71 0 0 chr9 35825882 35825924 -106445520 + AT_rich Low_complexity Low_complexity 1 42 0 252 0 0 0 chr9 35828547 35828575 -106442869 + (CCG)n Simple_repeat Simple_repeat 1 28 0 218 280 11 0 chr9 35828663 35828756 -106442688 + (CCG)n Simple_repeat Simple_repeat 1 94 0 22 35 0 0 chr9 35828849 35828878 -106442566 + GC_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr9 35828907 35828927 -106442517 + (CCGGG)n Simple_repeat Simple_repeat 4 23 0 4438 251 65 39 chr9 35829057 35830336 -106441108 - L1MB8 LINE L1 -1351 4795 3430 553 270 69 29 chr9 35830336 35830540 -106440904 + MER58C DNA MER1_type 3 214 -1 4438 251 65 39 chr9 35830540 35831539 -106439905 - L1MB8 LINE L1 -2716 3430 2458 1244 278 50 26 chr9 35831587 35832192 -106439252 + L1M4c LINE L1 1202 1820 -4564 1088 210 45 38 chr9 35832281 35832680 -106438764 + MLT2A2 LTR ERVL 134 546 -8 1285 174 4 0 chr9 35832680 35832921 -106438523 + L1MA8 LINE L1 5547 5788 -503 212 89 0 67 chr9 35832923 35832968 -106438476 + (TATATG)n Simple_repeat Simple_repeat 3 44 0 2278 130 47 71 chr9 35832989 35833495 -106437949 + L1MA8 LINE L1 5793 6286 -5 24 0 0 0 chr9 35835127 35835151 -106436293 + AT_rich Low_complexity Low_complexity 1 24 0 194 350 68 68 chr9 35835177 35835383 -106436061 + L2 LINE L2 2804 3009 -263 290 273 73 18 chr9 35835505 35835615 -106435829 + L2 LINE L2 3193 3308 -5 793 222 6 0 chr9 35835719 35835886 -106435558 + MLT1D LTR MaLR 1 168 -337 197 359 61 85 chr9 35835915 35836127 -106435317 + L2 LINE L2 3028 3234 -38 200 288 96 27 chr9 35836140 35836213 -106435231 + L2 LINE L2 3193 3270 -43 1041 192 43 13 chr9 35836223 35836457 -106434987 + MLT1D LTR MaLR 179 419 -86 632 268 98 69 chr9 35836643 35836995 -106434449 + L1 LINE L1 3342 3713 -2433 2187 105 0 3 chr9 35836995 35837291 -106434153 + AluY SINE Alu 1 295 -16 632 268 98 69 chr9 35837291 35837419 -106434025 + L1 LINE L1 3713 3836 -2310 257 221 39 77 chr9 35837924 35838028 -106433416 + L2 LINE L2 3193 3292 -21 3713 155 56 3 chr9 35838897 35839576 -106431868 + MER72 LTR ERV1 8 722 0 327 287 98 14 chr9 35840100 35840243 -106431201 + MIR SINE MIR 91 245 -17 671 273 59 5 chr9 35840309 35840529 -106430915 - MIR SINE MIR -19 243 12 2700 153 103 0 chr9 35840541 35841017 -106430427 - LTR45 LTR ERV1 0 525 1 1409 128 200 8 chr9 35842557 35842822 -106428622 + AluSg1 SINE Alu 2 311 0 430 346 5 5 chr9 35843444 35843632 -106427812 - HERVE LTR ERV1 -526 7594 7407 604 358 38 16 chr9 35843763 35844213 -106427231 - HERVE LTR ERV1 -1964 5158 4699 304 299 46 31 chr9 35844636 35844966 -106426478 - HERVE LTR ERV1 -2923 4062 3936 257 299 0 0 chr9 35845209 35845286 -106426158 - HERVE LTR ERV1 -5771 2964 2888 2859 108 28 2 chr9 35846561 35846995 -106424449 - LTR45 LTR ERV1 0 525 81 4544 148 82 7 chr9 35847709 35848549 -106422895 - MER4D LTR ERV1 0 903 1 1071 230 88 12 chr9 35848703 35849042 -106422402 - MLT1A1 LTR MaLR 0 365 1 931 247 226 36 chr9 35849544 35850070 -106421374 - MLT1E2 LTR MaLR -28 626 1 2806 22 0 0 chr9 35851684 35851997 -106419447 - AluYb8 SINE Alu -5 313 1 2007 135 29 35 chr9 35852055 35852432 -106419012 - THE1C LTR MaLR 0 375 1 1797 209 12 25 chr9 35852503 35852893 -106418551 + MER74A LTR ERVL 24 408 -150 2586 182 59 16 chr9 35852893 35853471 -106417973 + MER73 LTR ERVL 1 603 -41 2065 139 17 3 chr9 35853480 35853782 -106417662 + AluSx SINE Alu 1 306 -6 770 209 0 0 chr9 35853787 35853926 -106417518 + MER74A LTR ERVL 420 558 0 263 383 0 0 chr9 35854677 35854771 -106416673 + L2 LINE L2 3174 3267 -5 1458 198 134 68 chr9 35854894 35855363 -106416081 + MLT1D LTR MaLR 6 505 0 4136 116 7 0 chr9 35855489 35856039 -106415405 + MER41A LTR ERV1 1 554 0 252 173 347 0 chr9 35856040 35856115 -106415329 + MER41A-int LTR ERV1 2 102 -5844 4155 126 12 31 chr9 35856124 35856774 -106414670 + MER41A-int LTR ERV1 1 638 -5308 * 11836 121 44 26 chr9 35856762 35857722 -106413722 + MER41A-int LTR ERV1 1079 2021 -3925 2440 74 0 19 chr9 35857722 35858034 -106413410 + AluY SINE Alu 1 306 -5 11836 121 44 26 chr9 35858034 35860219 -106411225 + MER41A-int LTR ERV1 2021 5944 -2 4056 92 45 0 chr9 35860219 35860749 -106410695 + MER41A LTR ERV1 1 554 0 430 253 174 16 chr9 35861004 35861194 -106410250 + MIR SINE MIR 10 229 -33 253 267 93 0 chr9 35861247 35861333 -106410111 - MIR SINE MIR -29 233 140 1529 176 18 15 chr9 35861333 35861606 -106409838 + MLT1B LTR MaLR 1 274 -116 300 288 0 0 chr9 35861961 35862041 -106409403 + MIR3 SINE MIR 117 196 -12 1291 188 66 0 chr9 35862455 35862758 -106408686 + MER33 DNA MER1_type 2 324 0 255 61 0 0 chr9 35863165 35863198 -106408246 + (CA)n Simple_repeat Simple_repeat 2 34 0 1403 186 127 55 chr9 35863439 35863842 -106407602 + MSTB1 LTR MaLR 1 432 0 471 335 62 33 chr9 35864249 35864521 -106406923 + L2 LINE L2 2571 2850 -464 310 276 112 0 chr9 35864606 35864704 -106406740 - L2 LINE L2 -8 3305 3197 1386 229 22 29 chr9 35865108 35865377 -106406067 + L1MEc LINE L1 2076 2342 -4054 1114 210 22 5 chr9 35865377 35865601 -106405843 - L1PA16 LINE L1 0 6166 5939 1386 229 22 29 chr9 35865601 35865742 -106405702 + L1MEc LINE L1 2342 2483 -3913 31 0 0 0 chr9 35865742 35865773 -106405671 + AT_rich Low_complexity Low_complexity 1 31 0 555 39 113 0 chr9 35865773 35866009 -106405435 + (TA)n Simple_repeat Simple_repeat 1 262 0 26 74 0 0 chr9 35866009 35866063 -106405381 + AT_rich Low_complexity Low_complexity 1 54 0 437 82 101 0 chr9 35866070 35866228 -106405216 + (TA)n Simple_repeat Simple_repeat 1 174 0 239 96 109 13 chr9 35866256 35866412 -106405032 + (TA)n Simple_repeat Simple_repeat 1 171 0 439 98 86 0 chr9 35866426 35866589 -106404855 + (TA)n Simple_repeat Simple_repeat 2 178 0 956 231 25 50 chr9 35866589 35866910 -106404534 + L1MEc LINE L1 2441 2753 -3462 1230 171 68 4 chr9 35867155 35867216 -106404228 + AluJo SINE Alu 57 113 -199 241 26 53 0 chr9 35867216 35867254 -106404190 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 1230 171 68 4 chr9 35867254 35867426 -106404018 + AluJo SINE Alu 113 305 -7 674 259 87 47 chr9 35867441 35867762 -106403682 - MER46C DNA MER2_type -4 334 1 692 222 123 75 chr9 35867777 35868241 -106403203 - L1ME4a LINE L1 -23 6098 5613 1433 103 0 0 chr9 35868430 35868615 -106402829 - AluSg/x SINE Alu -9 303 119 1130 134 0 12 chr9 35868615 35868779 -106402665 + L1PA15 LINE L1 5991 6152 -13 328 231 217 35 chr9 35868829 35868972 -106402472 - MIR SINE MIR -21 241 73 703 302 116 22 chr9 35869492 35870045 -106401399 + HAL1b LINE L1 67 671 -677 1117 255 81 23 chr9 35870137 35870560 -106400884 + MER113 DNA MER1_type? 34 481 -40 637 214 6 60 chr9 35870560 35870728 -106400716 + MLT1A1 LTR MaLR 1 159 -206 427 329 123 6 chr9 35874411 35874581 -106396863 + MIR SINE MIR 20 209 -53 1416 211 82 38 chr9 35874990 35875361 -106396083 + L1ME2 LINE L1 5690 6085 -79 928 213 34 19 chr9 35875361 35875568 -106395876 - MER63A DNA MER1_type 0 210 1 1416 211 82 38 chr9 35875568 35875642 -106395802 + L1ME2 LINE L1 6085 6154 -10 22 35 0 0 chr9 35875944 35875973 -106395471 + AT_rich Low_complexity Low_complexity 1 29 0 1740 145 64 3 chr9 35875982 35876264 -106395180 + AluJb SINE Alu 1 299 -13 315 0 0 0 chr9 35876264 35876299 -106395145 + (TA)n Simple_repeat Simple_repeat 2 36 0 2166 236 68 40 chr9 35876300 35876926 -106394518 - L1ME1 LINE L1 -23 6143 5536 2039 111 0 0 chr9 35876926 35877196 -106394248 + AluY SINE Alu 37 306 -5 15988 83 6 0 chr9 35877203 35880090 -106391354 + L1PA7 LINE L1 3262 6154 0 2166 236 68 40 chr9 35880090 35881010 -106390434 - L1ME1 LINE L1 -635 5531 4454 2426 64 7 3 chr9 35881103 35881399 -106390045 - AluY SINE Alu -14 297 1 2130 173 19 32 chr9 35881403 35881872 -106389572 + MLT2D LTR ERVL 7 456 -8 446 255 15 59 chr9 35881874 35882025 -106389419 - L1ME1 LINE L1 -1801 4345 4201 839 223 48 0 chr9 35882471 35882637 -106388807 + FAM SINE Alu 1 174 -1 1712 223 65 34 chr9 35884174 35884680 -106386764 - L1ME3A LINE L1 -23 6147 5626 1785 141 3 30 chr9 35885618 35885917 -106385527 + AluJo SINE Alu 21 311 -1 353 375 11 5 chr9 35885935 35886119 -106385325 + MIR SINE MIR 73 257 -5 8993 174 136 19 chr9 35886271 35888246 -106383198 + L1PBa LINE L1 6 2211 -4652 3771 91 9 30 chr9 35888246 35888717 -106382727 + L1PB1 LINE L1 5632 6092 -59 2423 74 3 0 chr9 35888717 35889015 -106382429 + AluY SINE Alu 1 299 -12 3771 91 9 30 chr9 35889015 35889071 -106382373 + L1PB1 LINE L1 6092 6148 -3 2416 91 7 0 chr9 35889096 35889405 -106382039 + AluSx SINE Alu 1 311 -1 1265 195 44 101 chr9 35890259 35890756 -106380688 + L1MEc LINE L1 767 1235 -5161 278 278 57 21 chr9 35891006 35891200 -106380244 + L1M4 LINE L1 3792 3992 -2154 1931 256 54 14 chr9 35891225 35892401 -106379043 + L1MEc LINE L1 35 1347 -5049 356 142 9 3 chr9 35892401 35892476 -106378968 - MLT2B1 LTR ERVL 0 520 368 23 33 0 0 chr9 35892479 35892509 -106378935 + AT_rich Low_complexity Low_complexity 1 30 0 21 82 0 0 chr9 35892539 35892588 -106378856 + AT_rich Low_complexity Low_complexity 1 49 0 719 161 8 54 chr9 35892608 35892738 -106378706 - MLT2B1 LTR ERVL -40 480 357 790 216 57 5 chr9 35892756 35892842 -106378602 - Ricksha DNA DNA -810 444 349 13917 152 46 24 chr9 35892842 35893042 -106378402 - ERVL LTR ERVL -1 5763 5569 1982 145 0 10 chr9 35893042 35893339 -106378105 + AluJb SINE Alu 1 294 -18 13917 152 46 24 chr9 35893339 35895522 -106375922 - ERVL LTR ERVL -195 5569 3328 4571 124 22 13 chr9 35895524 35895863 -106375581 + L1PB1 LINE L1 5452 5787 -364 372 43 0 0 chr9 35895863 35895909 -106375535 + (TG)n Simple_repeat Simple_repeat 1 46 0 4571 124 22 13 chr9 35895909 35896262 -106375182 + L1PB1 LINE L1 5787 6150 -1 3009 184 25 11 chr9 35896267 35896880 -106374564 + L1 LINE L1 3777 4397 -1749 242 69 69 0 chr9 35896881 35896939 -106374505 + (TA)n Simple_repeat Simple_repeat 2 63 0 407 188 12 12 chr9 35896939 35897024 -106374420 + L1PB2 LINE L1 3931 4015 -2131 408 181 0 21 chr9 35897045 35897139 -106374305 + L1PB2 LINE L1 4424 4515 -1631 1137 79 7 0 chr9 35897154 35897294 -106374150 + AluSq SINE Alu 125 265 -48 305 217 64 11 chr9 35897304 35897397 -106374047 - L1MC4 LINE L1 -1339 6983 1995 471 78 0 0 chr9 35897397 35897461 -106373983 + (CA)n Simple_repeat Simple_repeat 1 64 0 5843 146 26 19 chr9 35897472 35898925 -106372519 + L1PB2 LINE L1 4493 5958 -193 2176 110 14 3 chr9 35898925 35899217 -106372227 + AluSc SINE Alu 2 296 -13 5843 146 26 19 chr9 35899217 35899406 -106372038 + L1PB2 LINE L1 5958 6144 -7 946 207 0 0 chr9 35899410 35899574 -106371870 + AluJb SINE Alu 121 284 -28 207 0 0 0 chr9 35899574 35899597 -106371847 + (CA)n Simple_repeat Simple_repeat 2 24 0 2147 112 3 3 chr9 35899681 35899985 -106371459 + AluSp SINE Alu 1 304 -9 4424 88 73 135 chr9 35900779 35901891 -106369553 - pTR5 LTR ERV1 0 2426 34 234 204 74 0 chr9 35901984 35902038 -106369406 + L2 LINE L2 3211 3268 -45 183 42 0 0 chr9 35902081 35902105 -106369339 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 371 269 187 65 chr9 35902497 35902899 -106368545 - L1M2 LINE L1 -5847 1002 552 326 312 48 0 chr9 35904925 35905050 -106366394 - MIR SINE MIR -102 160 30 214 350 10 29 chr9 35905211 35905314 -106366130 - MIR3 SINE MIR -4 204 104 185 135 135 0 chr9 35905625 35905662 -106365782 + L2 LINE L2 3214 3255 -17 523 275 35 40 chr9 35905705 35905905 -106365539 - MLT1J LTR MaLR -8 503 305 329 83 50 0 chr9 35905954 35906014 -106365430 + T-rich Low_complexity Low_complexity 5 67 0 2044 85 77 4 chr9 35906036 35906308 -106365136 - AluSg SINE Alu -18 292 1 25 0 0 0 chr9 35906316 35906341 -106365103 + AT_rich Low_complexity Low_complexity 1 25 0 351 222 35 154 chr9 35906342 35906486 -106364958 - MLT1L LTR MaLR -335 176 94 2226 103 0 7 chr9 35906486 35906777 -106364667 + AluSq SINE Alu 1 289 -24 351 222 35 154 chr9 35906777 35906862 -106364582 - MLT1L LTR MaLR -417 94 1 291 307 20 20 chr9 35906960 35907113 -106364331 - MER5A DNA MER1_type -36 153 1 649 251 94 39 chr9 35907291 35907598 -106363846 - HAL1 LINE L1 -111 2396 2073 231 86 0 0 chr9 35907849 35907884 -106363560 + MER69 DNA AcHobo 2384 2418 -108 458 183 10 48 chr9 35907927 35908031 -106363413 + MER69 DNA AcHobo 2411 2510 -16 1372 219 90 82 chr9 35908040 35908852 -106362592 - HAL1 LINE L1 -845 1662 845 322 305 48 0 chr9 35909583 35909688 -106361756 + L2 LINE L2 3153 3262 -10 194 311 189 0 chr9 35910958 35911080 -106360364 - L2 LINE L2 -195 3077 2933 547 255 48 81 chr9 35911430 35911740 -106359704 - L2 LINE L2 -829 2485 2186 452 327 14 6 chr9 35912340 35912401 -106359043 - MIR3 SINE MIR -21 187 128 2424 86 0 0 chr9 35912401 35912703 -106358741 + AluY SINE Alu 1 302 -9 452 327 14 6 chr9 35912703 35912807 -106358637 - MIR3 SINE MIR -80 128 20 1111 120 40 198 chr9 35913034 35913358 -106358086 - Tigger3(Golem) DNA MER2_type -2 3027 2755 2202 99 3 0 chr9 35913361 35913666 -106357778 + AluSp SINE Alu 1 306 0 1211 143 0 0 chr9 35913666 35913834 -106357610 + AluSg/x SINE Alu 132 299 -11 477 205 0 0 chr9 35913834 35913912 -106357532 - Tigger3(Golem) DNA MER2_type -2951 78 1 455 264 63 19 chr9 35914878 35915037 -106356407 - MIR SINE MIR -76 186 21 2655 37 3 0 chr9 35915354 35915654 -106355790 + AluY SINE Alu 1 301 -10 265 333 70 26 chr9 35915730 35915886 -106355558 + L2 LINE L2 2922 3084 -188 3967 154 82 41 chr9 35916050 35916190 -106355254 + L1MB7 LINE L1 4865 4998 -1186 2043 131 17 0 chr9 35916190 35916481 -106354963 + AluSx SINE Alu 1 296 -16 3967 154 82 41 chr9 35916481 35917079 -106354365 + L1MB7 LINE L1 4998 5570 -614 2562 206 109 30 chr9 35917079 35917758 -106353686 - MER44D DNA MER2_type 0 605 1 3967 154 82 41 chr9 35917758 35917921 -106353523 + L1MB7 LINE L1 5570 5725 -459 2302 99 7 0 chr9 35917921 35918224 -106353220 + AluSg SINE Alu 1 305 -5 2417 57 0 0 chr9 35918226 35918538 -106352906 + AluY SINE Alu 1 312 0 3967 154 82 41 chr9 35918538 35918891 -106352553 + L1MB7 LINE L1 5725 6159 -25 762 169 0 7 chr9 35919108 35919250 -106352194 + FLAM_C SINE Alu 2 142 -1 2204 149 15 35 chr9 35919300 35919476 -106351968 + MLT1B LTR MaLR 3 181 -209 2377 78 0 3 chr9 35919476 35919769 -106351675 + AluSq SINE Alu 1 292 -21 2204 149 15 35 chr9 35919769 35919988 -106351456 + MLT1B LTR MaLR 181 390 0 4474 168 43 34 chr9 35919988 35920132 -106351312 + MLT1B-int LTR MaLR 1 142 -1229 2286 94 19 10 chr9 35920132 35920439 -106351005 + AluSx SINE Alu 1 310 -2 4474 168 43 34 chr9 35920439 35920509 -106350935 + MLT1B-int LTR MaLR 142 210 -1161 2252 119 3 0 chr9 35920509 35920819 -106350625 + AluSx SINE Alu 1 311 -1 4474 168 43 34 chr9 35920819 35921478 -106349966 + MLT1B-int LTR MaLR 210 883 -488 312 333 9 0 chr9 35921539 35921644 -106349800 + MLT1B-int LTR MaLR 678 783 -952 2034 219 47 26 chr9 35921697 35921818 -106349626 + MLT1B-int LTR MaLR 895 1012 -359 1837 107 68 14 chr9 35921818 35922098 -106349346 + AluSg SINE Alu 1 295 -15 2034 219 47 26 chr9 35922098 35922441 -106349003 + MLT1B-int LTR MaLR 1012 1369 -2 1418 152 71 8 chr9 35922443 35922755 -106348689 + MLT1B LTR MaLR 1 381 -9 788 206 57 5 chr9 35922762 35922956 -106348488 + L1MB7 LINE L1 5776 5979 -205 405 222 22 0 chr9 35922956 35923046 -106348398 + MER20 DNA MER1_type 128 219 0 2272 95 0 29 chr9 35923240 35923555 -106347889 - AluSx SINE Alu 0 312 7 728 112 9 0 chr9 35923564 35923671 -106347773 - AluJb SINE Alu 0 312 205 354 135 0 0 chr9 35923671 35923723 -106347721 - AluSp SINE Alu -131 172 121 315 170 0 0 chr9 35923742 35923795 -106347649 - AluJb SINE Alu -169 133 81 2199 132 0 0 chr9 35923795 35924106 -106347338 - AluSx SINE Alu -1 311 1 465 262 28 14 chr9 35924241 35924386 -106347058 - MER20 DNA MER1_type 0 219 73 243 130 0 0 chr9 35924490 35924536 -106346908 - Alu SINE Alu 0 303 258 246 174 0 0 chr9 35925148 35925194 -106346250 + GA-rich Low_complexity Low_complexity 3 48 0 1844 129 16 43 chr9 35925571 35925874 -106345570 - AluJb SINE Alu -17 295 1 28 48 0 0 chr9 35925985 35926027 -106345417 + AT_rich Low_complexity Low_complexity 1 42 0 2249 97 7 7 chr9 35926638 35926927 -106344517 + AluSq SINE Alu 1 289 -24 362 303 53 11 chr9 35927024 35927212 -106344232 + L1ME2 LINE L1 59 254 -6605 1073 274 30 15 chr9 35927594 35927635 -106343809 + L1ME2 LINE L1 1475 1514 -5341 2296 103 3 3 chr9 35927635 35927937 -106343507 - AluSx SINE Alu -10 302 1 1073 274 30 15 chr9 35927937 35928308 -106343136 + L1ME2 LINE L1 1514 1889 -4966 1147 167 27 0 chr9 35928376 35928597 -106342847 + L1 LINE L1 4699 4925 -1221 673 289 119 30 chr9 35928624 35929336 -106342108 + L1ME2 LINE L1 1813 2637 -4501 2234 56 0 77 chr9 35929336 35929659 -106341785 + AluY SINE Alu 1 298 -13 673 289 119 30 chr9 35929659 35929929 -106341515 + L1ME2 LINE L1 2637 2882 -4256 1035 249 98 51 chr9 35929941 35930645 -106340799 + L1ME2 LINE L1 4606 5342 -1615 4830 223 32 33 chr9 35930799 35931521 -106339923 + L1PA12 LINE L1 2196 2917 -4667 2517 71 0 3 chr9 35931521 35931830 -106339614 + AluY SINE Alu 1 308 -3 4830 223 32 33 chr9 35931830 35932997 -106338447 + L1PA12 LINE L1 2917 4104 -3480 3548 136 82 3 chr9 35932997 35933591 -106337853 + L1PA16 LINE L1 5517 6157 -9 308 252 36 29 chr9 35933598 35933737 -106337707 + L1ME2 LINE L1 5344 5483 -1474 1827 179 42 10 chr9 35933737 35934298 -106337146 + MER76 LTR ERV 1 635 -53 502 33 0 0 chr9 35934310 35934371 -106337073 + L1PA16 LINE L1 6097 6157 -9 553 227 23 0 chr9 35934449 35934577 -106336867 + L1ME2 LINE L1 5480 5610 -1347 * 2445 238 57 21 chr9 35934575 35935289 -106336155 + L1ME2 LINE L1 6226 6965 -10 222 128 0 0 chr9 35935381 35935420 -106336024 + (TGGA)n Simple_repeat Simple_repeat 3 41 0 1391 86 0 0 chr9 35935669 35935844 -106335600 + AluY SINE Alu 128 302 -9 284 235 0 126 chr9 35936815 35936934 -106334510 + MIR SINE MIR 51 154 -108 2894 10 0 0 chr9 35937094 35937404 -106334040 - AluYa5 SINE Alu -1 310 1 1327 298 86 29 chr9 35939049 35939680 -106331764 + HERVL LTR ERVL 2563 3229 -2425 2848 176 11 0 chr9 35939716 35940187 -106331257 - MER70B LTR ERVL -102 476 1 397 273 9 27 chr9 35940601 35940711 -106330733 + HERVL LTR ERVL 3726 3833 -1821 755 289 102 62 chr9 35940727 35941481 -106329963 - L1MEd LINE L1 -5012 1107 324 341 285 64 47 chr9 35941721 35941893 -106329551 + MIR SINE MIR 2 176 -86 297 279 78 87 chr9 35942441 35942774 -106328670 + L2 LINE L2 2984 3313 0 595 133 37 1 chr9 35942964 35943073 -106328371 + L1MA5A LINE L1 6006 6119 -184 203 269 30 0 chr9 35943834 35943901 -106327543 + (CAGG)n Simple_repeat Simple_repeat 4 72 0 359 298 16 16 chr9 35944520 35944644 -106326800 + MIR SINE MIR 21 144 -118 253 244 115 0 chr9 35945653 35945731 -106325713 + MIR SINE MIR 64 150 -112 547 217 19 76 chr9 35947879 35948036 -106323408 - MER5B DNA MER1_type -29 149 2 374 320 6 58 chr9 35948982 35949154 -106322290 + MER5B DNA MER1_type 16 178 0 747 186 28 0 chr9 35949168 35949313 -106322131 - MER5A DNA MER1_type -7 182 34 198 0 0 0 chr9 35953119 35953141 -106318303 + (CCA)n Simple_repeat Simple_repeat 1 22 0 231 207 0 0 chr9 35953141 35953199 -106318245 + A-rich Low_complexity Low_complexity 1 58 0 1509 117 108 29 chr9 35953501 35953741 -106317703 - AluSx SINE Alu -53 259 1 4462 129 9 10 chr9 35953766 35954465 -106316979 - L1PA16 LINE L1 -9 6157 5460 197 250 19 0 chr9 35955278 35955330 -106316114 + MIR SINE MIR 93 145 -63 264 231 115 0 chr9 35956346 35956424 -106315020 + MIR SINE MIR 64 150 -112 1738 186 113 52 chr9 35956477 35956938 -106314506 - L1MDa LINE L1 -4836 1808 1306 2369 99 0 0 chr9 35956938 35957240 -106314204 - AluSx SINE Alu -10 302 1 1738 186 113 52 chr9 35957240 35957337 -106314107 - L1MDa LINE L1 -5338 1306 1216 2424 177 17 15 chr9 35957345 35957826 -106313618 - L1MC1 LINE L1 -1 6332 5851 799 172 0 14 chr9 35957833 35957978 -106313466 + FLAM_C SINE Alu 1 143 0 1394 147 8 56 chr9 35957997 35958249 -106313195 - AluJo SINE Alu -30 282 43 1150 110 17 6 chr9 35958249 35958422 -106313022 - L1MC1 LINE L1 -510 5823 5649 299 235 25 101 chr9 35958419 35958538 -106312906 + L1MB2 LINE L1 6005 6114 -57 * 412 285 73 57 chr9 35958639 35958955 -106312489 + L1ME4a LINE L1 5578 5898 -223 252 0 0 0 chr9 35958956 35958984 -106312460 + (TG)n Simple_repeat Simple_repeat 2 29 0 305 289 154 7 chr9 35959107 35959256 -106312188 - MIR SINE MIR -8 254 84 965 264 45 32 chr9 35959431 35959741 -106311703 - L1MDa LINE L1 -6227 315 2 2078 134 0 0 chr9 35959755 35960066 -106311378 - AluSx SINE Alu 0 311 1 447 224 42 63 chr9 35960249 35960392 -106311052 + L1M4 LINE L1 483 622 -5920 539 319 94 51 chr9 35960414 35960966 -106310478 + L1M4 LINE L1 797 1372 -5262 321 359 24 12 chr9 35960981 35961148 -106310296 - L2 LINE L2 -180 3092 2924 360 296 107 28 chr9 35961276 35961529 -106309915 - L2 LINE L2 -553 2761 2489 3807 156 24 17 chr9 35961532 35961903 -106309541 + L1PA15 LINE L1 4675 5042 -1123 2211 113 0 0 chr9 35961903 35962194 -106309250 + AluSg SINE Alu 5 295 -15 3807 156 24 17 chr9 35962194 35963009 -106308435 + L1PA15 LINE L1 5042 5867 -298 1653 48 48 0 chr9 35963047 35963255 -106308189 + LTR12 LTR ERV1 493 710 -4 766 207 0 0 chr9 35963255 35963395 -106308049 + AluJb SINE Alu 153 292 -20 1812 114 0 46 chr9 35963396 35963676 -106307768 + AluSg SINE Alu 33 299 -11 5679 161 17 36 chr9 35963678 35964687 -106306757 + L1 LINE L1 3303 4289 -1857 2118 134 0 0 chr9 35964687 35964986 -106306458 + AluSx SINE Alu 1 299 -13 5679 161 17 36 chr9 35964986 35965128 -106306316 + L1 LINE L1 4289 4432 -1714 858 102 0 0 chr9 35965139 35965247 -106306197 - AluSq/x SINE Alu -205 108 1 2063 145 0 13 chr9 35965335 35965645 -106305799 + AluSx SINE Alu 1 306 -6 38 0 0 0 chr9 35965720 35965758 -106305686 + AT_rich Low_complexity Low_complexity 1 38 0 230 189 0 19 chr9 35965859 35965912 -106305532 - L2 LINE L2 0 3313 3262 259 296 0 0 chr9 35966063 35966134 -106305310 - L2 LINE L2 -16 3256 3186 3496 154 45 7 chr9 35966773 35967375 -106304069 + L1MC3 LINE L1 7136 7760 -25 1763 181 3 0 chr9 35967376 35967664 -106303780 + AluJb SINE Alu 1 289 -23 254 262 136 0 chr9 35967725 35967828 -106303616 - MIR SINE MIR -14 248 132 1147 149 0 0 chr9 35967840 35968015 -106303429 + AluSg/x SINE Alu 134 308 -2 237 330 0 0 chr9 35968892 35968980 -106302464 + G-rich Low_complexity Low_complexity 2 89 0 261 83 0 0 chr9 35969037 35969073 -106302371 + (TCCC)n Simple_repeat Simple_repeat 4 39 0 265 206 48 71 chr9 35969106 35969232 -106302212 + C-rich Low_complexity Low_complexity 6 128 0 219 36 0 0 chr9 35969640 35969668 -106301776 + (CCG)n Simple_repeat Simple_repeat 3 30 0 233 29 29 0 chr9 35970276 35970310 -106301134 + (TGGGGG)n Simple_repeat Simple_repeat 1 35 0 189 0 0 0 chr9 35970440 35970461 -106300983 + (A)n Simple_repeat Simple_repeat 1 21 0 2394 77 0 0 chr9 35971549 35971846 -106299598 - AluSg SINE Alu -13 297 1 228 86 0 0 chr9 35972003 35972038 -106299406 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 1498 180 14 32 chr9 35973084 35973367 -106298077 - AluJo SINE Alu -34 278 1 2086 106 10 27 chr9 35973530 35973831 -106297613 - AluSx SINE Alu -16 296 1 2378 84 3 3 chr9 35974004 35974302 -106297142 - AluSp SINE Alu -15 298 1 1636 141 44 44 chr9 35974337 35974635 -106296809 - AluJo SINE Alu -14 298 1 21 0 0 0 chr9 35974635 35974656 -106296788 + AT_rich Low_complexity Low_complexity 1 21 0 2151 120 3 3 chr9 35974817 35975116 -106296328 - AluSx SINE Alu -13 299 1 839 157 0 0 chr9 35975127 35975248 -106296196 - FLAM_C SINE Alu -22 121 1 2353 95 0 0 chr9 35975291 35975586 -106295858 - AluSx SINE Alu -17 295 1 294 293 0 75 chr9 35976050 35976120 -106295324 + HsTC2 DNA Tc2 4 61 -1837 2174 112 0 38 chr9 35976120 35976265 -106295179 + AluSx SINE Alu 1 150 -162 2314 83 0 10 chr9 35976265 35976565 -106294879 + AluY SINE Alu 1 297 -14 2174 112 0 38 chr9 35976565 35976733 -106294711 + AluSx SINE Alu 150 302 -10 294 293 0 75 chr9 35976733 35976795 -106294649 + HsTC2 DNA Tc2 61 126 -1772 237 26 205 0 chr9 35977074 35977113 -106294331 + AluY SINE Alu 1 47 -252 2219 115 17 0 chr9 35977155 35977451 -106293993 - AluSx SINE Alu -11 301 1 2144 100 0 14 chr9 35977784 35978073 -106293371 + AluSx SINE Alu 15 299 -13 2072 106 3 7 chr9 35978327 35978609 -106292835 + AluY SINE Alu 1 281 -30 1808 124 6 76 chr9 35978710 35979025 -106292419 + AluSx SINE Alu 5 297 -15 21 0 0 0 chr9 35979041 35979062 -106292382 + AT_rich Low_complexity Low_complexity 1 21 0 846 210 6 30 chr9 35979080 35979247 -106292197 + AluJb SINE Alu 129 291 -21 264 71 94 71 chr9 35979247 35979269 -106292175 + (TTAAA)n Simple_repeat Simple_repeat 2 22 -66 2099 133 0 0 chr9 35979269 35979562 -106291882 + AluSq SINE Alu 1 293 -20 264 71 94 71 chr9 35979562 35979599 -106291845 + (TTAAA)n Simple_repeat Simple_repeat 22 66 -22 2278 122 0 0 chr9 35979599 35979910 -106291534 + AluSx SINE Alu 1 311 -1 264 71 94 71 chr9 35979910 35979934 -106291510 + (TTAAA)n Simple_repeat Simple_repeat 66 88 0 2124 113 14 0 chr9 35979934 35980225 -106291219 + AluSx SINE Alu 1 295 -17 645 301 44 22 chr9 35980373 35980778 -106290666 + L1MEc LINE L1 1390 1803 -4593 2215 68 0 55 chr9 35980811 35981119 -106290325 + AluY SINE Alu 12 302 -9 284 235 0 126 chr9 35982090 35982209 -106289235 + MIR SINE MIR 51 154 -108 2849 22 0 0 chr9 35982374 35982685 -106288759 - AluYa5 SINE Alu 0 311 1 1327 298 86 29 chr9 35984330 35984961 -106286483 + HERVL LTR ERVL 2563 3229 -2425 2848 176 11 0 chr9 35984997 35985468 -106285976 - MER70B LTR ERVL -102 476 1 2378 106 0 0 chr9 35986751 35987053 -106284391 - AluSq SINE Alu -11 302 1 2684 161 16 12 chr9 35987499 35987990 -106283454 + L1MB2 LINE L1 5677 6169 -2 299 364 84 4 chr9 35989034 35989407 -106282037 + L2 LINE L2 2560 2966 -306 476 213 8 71 chr9 35989468 35989595 -106281849 + L2 LINE L2 3179 3297 -16 213 39 0 0 chr9 35989837 35989863 -106281581 + (TAAA)n Simple_repeat Simple_repeat 4 29 0 2398 116 0 0 chr9 35990154 35990465 -106280979 - AluSq SINE Alu -2 311 1 226 208 0 0 chr9 35990465 35990513 -106280931 - L1ME3A LINE L1 -224 5946 5899 2327 93 7 7 chr9 35990757 35991067 -106280377 + AluSg SINE Alu 1 310 0 298 203 27 0 chr9 35991918 35991992 -106279452 + L1MEc LINE L1 767 842 -5554 455 264 63 19 chr9 35992109 35992268 -106279176 - MIR SINE MIR -76 186 21 2482 68 0 0 chr9 35992585 35992877 -106278567 + AluSq SINE Alu 1 292 -21 1306 169 5 0 chr9 35992877 35993096 -106278348 + MLT1B LTR MaLR 171 390 0 4086 174 45 36 chr9 35993096 35993240 -106278204 + MLT1B-int LTR MaLR 1 142 -1229 2286 94 19 10 chr9 35993240 35993547 -106277897 + AluSx SINE Alu 1 310 -2 4086 174 45 36 chr9 35993547 35993617 -106277827 + MLT1B-int LTR MaLR 142 210 -1161 2252 119 3 0 chr9 35993617 35993927 -106277517 + AluSx SINE Alu 1 311 -1 4086 174 45 36 chr9 35993927 35994550 -106276894 + MLT1B-int LTR MaLR 210 847 -524 303 238 0 0 chr9 35994756 35994819 -106276625 - MLT1H1 LTR MaLR -492 63 1 215 184 0 0 chr9 35994926 35994964 -106276480 + L2 LINE L2 3149 3186 -86 329 312 14 35 chr9 35995036 35995177 -106276267 + MIR3 SINE MIR 42 179 -29 1781 165 58 36 chr9 35995202 35995565 -106275879 - MLT1A2 LTR MaLR 0 374 4 500 196 5 162 chr9 35995946 35996150 -106275294 - MER5B DNA MER1_type 0 178 7 1684 192 104 72 chr9 35996252 35996517 -106274927 + MLT1D LTR MaLR 1 291 -214 2188 126 3 0 chr9 35996517 35996827 -106274617 + AluSq SINE Alu 3 313 0 1684 192 104 72 chr9 35996827 35997050 -106274394 + MLT1D LTR MaLR 291 505 0 311 143 16 0 chr9 35997445 35997508 -106273936 + AluSp/q SINE Alu 240 303 0 757 181 30 8 chr9 35997508 35997641 -106273803 - MER2 DNA MER2_type -209 136 1 256 225 0 45 chr9 35997653 35997742 -106273702 + (TA)n Simple_repeat Simple_repeat 2 86 0 402 236 28 66 chr9 35997792 35997820 -106273624 + HAL1 LINE L1 1155 1183 -1324 1174 180 43 106 chr9 35997820 35997940 -106273504 + AluJo SINE Alu 1 127 -175 1730 172 20 17 chr9 35997940 35998242 -106273202 + AluJo SINE Alu 1 303 -9 1174 180 43 106 chr9 35998242 35998443 -106273001 + AluJo SINE Alu 127 302 0 402 236 28 66 chr9 35998443 35998596 -106272848 + HAL1 LINE L1 1183 1329 -1178 796 252 104 0 chr9 35998606 35998876 -106272568 + HAL1 LINE L1 1395 1692 -815 2033 136 0 7 chr9 35998890 35999184 -106272260 - AluSx SINE Alu -19 293 2 341 98 115 16 chr9 35999184 35999245 -106272199 + L1MB8 LINE L1 6049 6115 -63 1318 117 0 75 chr9 35999246 35999460 -106271984 - Tigger3(Golem) DNA MER2_type 0 3029 2832 1366 86 6 6 chr9 35999461 35999636 -106271808 - AluSq SINE Alu -138 175 1 24 0 0 0 chr9 35999696 35999720 -106271724 + AT_rich Low_complexity Low_complexity 1 24 0 2329 106 6 0 chr9 35999720 36000031 -106271413 - AluSp SINE Alu 0 313 1 2199 119 0 0 chr9 36000034 36000329 -106271115 - AluSx SINE Alu -17 295 1 202 289 0 0 chr9 36000653 36000705 -106270739 + MIR SINE MIR 211 262 0 23 0 0 0 chr9 36001424 36001447 -106269997 + AT_rich Low_complexity Low_complexity 1 23 0 2160 106 0 7 chr9 36001603 36001896 -106269548 - AluY SINE Alu -18 293 3 327 249 221 55 chr9 36002320 36002400 -106269044 - MIR SINE MIR -19 243 178 993 232 157 20 chr9 36002400 36002796 -106268648 - MLT1J2 LTR MaLR 0 450 1 327 249 221 55 chr9 36002796 36002896 -106268548 - MIR SINE MIR -84 178 33 2421 95 0 3 chr9 36003988 36004292 -106267152 - AluSq SINE Alu -9 304 2 1307 256 23 7 chr9 36004525 36004833 -106266611 + MLT1A1 LTR MaLR 1 313 -52 566 240 54 54 chr9 36004988 36005155 -106266289 + MIR SINE MIR 49 218 -44 2473 58 0 35 chr9 36005155 36005467 -106265977 + AluY SINE Alu 1 301 -10 566 240 54 54 chr9 36005467 36005503 -106265941 + MIR SINE MIR 217 252 -10 990 179 10 46 chr9 36005690 36005885 -106265559 - MER5A DNA MER1_type -1 188 1 415 298 128 14 chr9 36005960 36006178 -106265266 - MIR SINE MIR -14 248 6 1231 193 119 28 chr9 36006350 36006635 -106264809 - AluJb SINE Alu -1 311 1 291 278 139 0 chr9 36006878 36006986 -106264458 - MLT1H LTR MaLR -327 222 100 363 143 0 0 chr9 36006986 36007040 -106264404 - Alu SINE Alu -252 48 1 20099 83 2 1 chr9 36007430 36010156 -106261288 + L1P LINE L1 11 2737 -3409 22 0 0 0 chr9 36010257 36010279 -106261165 + AT_rich Low_complexity Low_complexity 1 22 0 1002 114 42 6 chr9 36010349 36010508 -106260936 - AluSg/x SINE Alu -14 296 129 1929 132 9 41 chr9 36010508 36010692 -106260752 - AluSx SINE Alu -4 308 137 2072 131 0 3 chr9 36010692 36010989 -106260455 - AluSq SINE Alu -17 296 1 1929 132 9 41 chr9 36010989 36011122 -106260322 - AluSx SINE Alu -175 137 1 977 188 0 33 chr9 36011319 36011500 -106259944 + L1PB4 LINE L1 5974 6148 -8 2323 79 10 7 chr9 36011748 36012051 -106259393 - AluSp SINE Alu -9 304 1 1555 117 5 0 chr9 36012113 36012327 -106259117 - AluSg/x SINE Alu -13 297 83 2070 102 10 3 chr9 36012466 36012761 -106258683 + AluSx SINE Alu 5 301 -11 701 124 0 0 chr9 36012953 36013050 -106258394 + HY3 scRNA scRNA 1 97 -4 213 39 0 0 chr9 36013050 36013076 -106258368 + (A)n Simple_repeat Simple_repeat 1 26 0 833 165 8 8 chr9 36013135 36013268 -106258176 + FLAM_C SINE Alu 1 133 0 1673 111 0 0 chr9 36013393 36013618 -106257826 - AluSg/x SINE Alu -13 299 75 185 0 40 0 chr9 36013618 36013643 -106257801 + (TTTTA)n Simple_repeat Simple_repeat 3 28 0 1999 130 0 7 chr9 36013644 36013936 -106257508 - AluY SINE Alu -21 290 1 2327 78 3 0 chr9 36014002 36014309 -106257135 + AluSp SINE Alu 1 308 0 2238 99 0 13 chr9 36014350 36014664 -106256780 + AluY SINE Alu 1 310 -1 299 173 40 0 chr9 36014773 36014848 -106256596 - L1ME1 LINE L1 -5 6161 6084 2102 119 0 3 chr9 36015046 36015340 -106256104 - AluY SINE Alu -18 293 1 970 93 47 0 chr9 36015340 36015469 -106255975 - AluSq/x SINE Alu -178 135 1 2158 180 71 9 chr9 36015605 36016054 -106255390 - L1MB4 LINE L1 -1 6179 5703 448 262 0 78 chr9 36016055 36016165 -106255279 - L1M4c LINE L1 -6225 159 61 2130 106 6 37 chr9 36016165 36016486 -106254958 - AluSx SINE Alu -1 311 1 448 262 0 78 chr9 36016486 36016516 -106254928 - L1M4c LINE L1 -6323 61 30 303 225 53 119 chr9 36016554 36016610 -106254834 - L1ME4a LINE L1 -7 6114 6056 2318 102 3 0 chr9 36016610 36016915 -106254529 + AluSp SINE Alu 7 312 -1 303 225 53 119 chr9 36016915 36017009 -106254435 - L1ME4a LINE L1 -65 6056 5974 1967 156 3 0 chr9 36017121 36017422 -106254022 - AluSx SINE Alu -10 302 1 281 169 104 13 chr9 36017468 36017545 -106253899 - L1ME4a LINE L1 -2050 5758 5675 1877 162 0 3 chr9 36017575 36017865 -106253579 + AluJo SINE Alu 1 289 -23 367 165 118 63 chr9 36017866 36017993 -106253451 + Tigger3(Golem) DNA MER2_type 2395 2528 -501 1307 96 0 17 chr9 36017996 36018174 -106253270 + AluSq SINE Alu 1 175 -138 1369 113 0 70 chr9 36018175 36018388 -106253056 + Tigger3(Golem) DNA MER2_type 2832 3029 0 377 82 115 16 chr9 36018389 36018450 -106252994 - L1MB8 LINE L1 -63 6115 6049 2009 139 0 7 chr9 36018450 36018745 -106252699 + AluSx SINE Alu 2 294 -18 815 252 104 0 chr9 36018759 36019029 -106252415 - HAL1 LINE L1 -815 1692 1395 419 236 28 66 chr9 36019039 36019192 -106252252 - HAL1 LINE L1 -1178 1329 1183 1266 177 47 109 chr9 36019192 36019393 -106252051 - AluJo SINE Alu 0 302 127 1744 169 20 17 chr9 36019393 36019695 -106251749 - AluJo SINE Alu -9 303 1 1266 177 47 109 chr9 36019695 36019815 -106251629 - AluJo SINE Alu -175 127 1 419 236 28 66 chr9 36019815 36019843 -106251601 - HAL1 LINE L1 -1324 1183 1155 256 225 0 45 chr9 36019893 36019982 -106251462 + (TA)n Simple_repeat Simple_repeat 1 85 0 724 186 31 8 chr9 36019994 36020123 -106251321 + MER2 DNA MER2_type 1 132 -213 421 101 0 29 chr9 36020123 36020192 -106251252 - Alu SINE Alu -8 302 236 293 167 0 19 chr9 36020257 36020311 -106251133 + MER2 DNA MER2_type 268 320 -25 212 167 21 0 chr9 36020323 36020371 -106251073 + (TA)n Simple_repeat Simple_repeat 2 50 0 442 156 0 0 chr9 36020536 36020600 -106250844 + AluS SINE Alu 2 65 -253 2169 114 3 0 chr9 36020776 36021074 -106250370 + AluSx SINE Alu 1 299 -13 1731 175 42 82 chr9 36021076 36021214 -106250230 + MLT1A1 LTR MaLR 1 143 -222 2193 114 0 0 chr9 36021214 36021513 -106249931 - AluSq SINE Alu -14 299 1 1731 175 42 82 chr9 36021513 36021689 -106249755 + MLT1A1 LTR MaLR 143 300 -65 1847 162 7 14 chr9 36021689 36021985 -106249459 + AluJo SINE Alu 1 294 -18 1731 175 42 82 chr9 36021985 36022046 -106249398 + MLT1A1 LTR MaLR 300 362 -3 241 237 21 82 chr9 36022175 36022272 -106249172 - L1ME3A LINE L1 -106 6064 5974 1405 244 70 48 chr9 36022361 36022906 -106248538 - L1MC5 LINE L1 -449 7512 6956 1037 139 7 0 chr9 36022911 36023062 -106248382 - AluSq SINE Alu -23 290 139 2294 82 10 0 chr9 36023063 36023355 -106248089 - AluSx SINE Alu -17 295 1 794 244 53 51 chr9 36023360 36023736 -106247708 - L1MC5 LINE L1 -1064 6978 6589 6728 161 124 138 chr9 36024002 36024097 -106247347 - Cheshire DNA MER1_type 0 2420 2325 1546 169 15 8 chr9 36024097 36024358 -106247086 + AluJb SINE Alu 5 267 -45 6728 161 124 138 chr9 36024358 36024868 -106246576 - Cheshire DNA MER1_type -95 2325 1810 702 197 134 14 chr9 36024868 36025010 -106246434 + FRAM SINE Alu 1 159 -7 2330 105 0 3 chr9 36025018 36025322 -106246122 - AluSx SINE Alu -7 305 3 6728 161 124 138 chr9 36025322 36025454 -106245990 - Cheshire DNA MER1_type -617 1803 1671 2099 122 14 0 chr9 36025454 36025750 -106245694 - AluSx SINE Alu -12 300 1 6728 161 124 138 chr9 36025750 36026194 -106245250 - Cheshire DNA MER1_type -749 1671 1223 2183 88 11 0 chr9 36026194 36026479 -106244965 - AluSq SINE Alu -25 288 1 6728 161 124 138 chr9 36026479 36026745 -106244699 - Cheshire DNA MER1_type -1197 1223 955 2210 104 7 7 chr9 36026745 36027044 -106244400 - AluSx SINE Alu -13 299 1 6728 161 124 138 chr9 36027044 36027156 -106244288 - Cheshire DNA MER1_type -1465 955 843 555 71 0 0 chr9 36027156 36027226 -106244218 - AluSp/q SINE Alu -10 303 234 2426 64 0 7 chr9 36027226 36027523 -106243921 - AluY SINE Alu -16 295 1 6728 161 124 138 chr9 36027523 36027701 -106243743 - Cheshire DNA MER1_type -1576 844 665 2093 124 7 10 chr9 36027701 36027836 -106243608 + AluSx SINE Alu 1 135 -177 2173 73 63 0 chr9 36027836 36028122 -106243322 + AluY SINE Alu 1 304 -7 2093 124 7 10 chr9 36028122 36028284 -106243160 + AluSx SINE Alu 135 297 -15 6728 161 124 138 chr9 36028284 36028807 -106242637 - Cheshire DNA MER1_type -1755 665 106 757 271 127 48 chr9 36028809 36029059 -106242385 - L1MCc LINE L1 -4590 2532 2303 1981 132 10 10 chr9 36029059 36029370 -106242074 - AluSx SINE Alu -1 311 1 757 271 127 48 chr9 36029370 36029723 -106241721 - L1MCc LINE L1 -4819 2303 1979 2167 114 3 10 chr9 36029723 36030030 -106241414 - AluSq SINE Alu -8 305 1 757 271 127 48 chr9 36030030 36030479 -106240965 - L1MCc LINE L1 -5143 1979 1173 1985 136 3 10 chr9 36030581 36030876 -106240568 - AluSq SINE Alu -17 296 4 1363 189 97 37 chr9 36031038 36031148 -106240296 - Charlie1 DNA MER1_type -400 2361 2259 1745 180 7 0 chr9 36031148 36031442 -106240002 + AluSx SINE Alu 1 296 -16 1363 189 97 37 chr9 36031442 36031681 -106239763 - Charlie1 DNA MER1_type -502 2259 1991 2481 80 0 0 chr9 36031681 36031983 -106239461 + AluSp SINE Alu 1 302 -11 234 292 0 21 chr9 36032050 36032146 -106239298 + (TATATG)n Simple_repeat Simple_repeat 5 98 0 455 229 25 8 chr9 36032168 36032286 -106239158 + MIR SINE MIR 74 193 -69 1337 179 4 40 chr9 36032294 36032567 -106238877 + AluJb SINE Alu 19 281 -31 259 237 140 32 chr9 36032570 36032663 -106238781 - MIR SINE MIR -76 186 84 26 30 0 0 chr9 36033861 36033894 -106237550 + AT_rich Low_complexity Low_complexity 1 33 0 1442 227 218 15 chr9 36033924 36034471 -106236973 - L1MC4 LINE L1 -144 7898 7241 267 164 49 0 chr9 36034474 36034535 -106236909 - L1MC4 LINE L1 -957 7085 7022 30 59 0 0 chr9 36034585 36034636 -106236808 + AT_rich Low_complexity Low_complexity 1 51 0 1826 145 10 3 chr9 36034736 36035026 -106236418 + AluJo SINE Alu 1 292 -20 1929 143 45 0 chr9 36035445 36035731 -106235713 + AluSx SINE Alu 1 299 -13 2231 104 16 0 chr9 36035984 36036291 -106235153 - AluSp SINE Alu -1 312 1 302 44 0 0 chr9 36036483 36036528 -106234916 - AluJo SINE Alu 0 302 258 863 172 29 46 chr9 36036528 36036702 -106234742 - AluJo SINE Alu -141 171 1 266 262 207 55 chr9 36036704 36037029 -106234415 - L1M4 LINE L1 -3131 3015 2612 2179 114 0 7 chr9 36037029 36037328 -106234116 - AluSq SINE Alu -16 297 1 266 262 207 55 chr9 36037328 36037418 -106234026 - L1M4 LINE L1 -3534 2612 2537 1722 152 26 0 chr9 36037424 36037693 -106233751 - AluJb SINE Alu -11 301 26 351 320 71 48 chr9 36037725 36037994 -106233450 - L1M4 LINE L1 -3594 2552 2278 1626 147 96 0 chr9 36038502 36038774 -106232670 + AluJb SINE Alu 1 298 -14 897 215 114 64 chr9 36038974 36039412 -106232032 - HAL1 LINE L1 -1 2506 2047 360 181 0 0 chr9 36039506 36039589 -106231855 + (TCCG)n Simple_repeat Simple_repeat 2 84 0 2333 98 3 0 chr9 36039595 36039902 -106231542 - AluSx SINE Alu -4 308 1 285 330 18 9 chr9 36039902 36040011 -106231433 - HAL1 LINE L1 -2394 113 4 2078 125 10 0 chr9 36040022 36040318 -106231126 - AluSx SINE Alu -9 303 5 1353 192 49 21 chr9 36041126 36041413 -106230031 - AluJb SINE Alu -17 295 1 2151 107 0 4 chr9 36041517 36041830 -106229614 - AluSg SINE Alu 0 312 1 22 0 0 0 chr9 36041840 36041862 -106229582 + AT_rich Low_complexity Low_complexity 1 22 0 360 0 0 0 chr9 36042467 36042507 -106228937 + (TG)n Simple_repeat Simple_repeat 1 40 0 216 0 0 0 chr9 36042506 36042530 -106228914 + (GA)n Simple_repeat Simple_repeat 1 24 0 * 1569 187 3 21 chr9 36042530 36042813 -106228631 - AluJo SINE Alu -34 278 1 21 0 0 0 chr9 36042813 36042834 -106228610 + AT_rich Low_complexity Low_complexity 1 21 0 1550 166 26 15 chr9 36043323 36043594 -106227850 + AluJo SINE Alu 1 274 -38 2345 43 0 7 chr9 36043644 36043965 -106227479 - AluY SINE Alu 0 319 1 1559 130 29 104 chr9 36043991 36044307 -106227137 + AluSx SINE Alu 1 292 -20 2320 107 0 3 chr9 36044549 36044858 -106226586 - AluSg SINE Alu -2 308 1 2025 102 44 14 chr9 36045629 36045924 -106225520 + AluSg SINE Alu 7 310 0 1964 103 40 30 chr9 36045947 36046247 -106225197 + AluSx SINE Alu 1 303 -9 1218 157 0 15 chr9 36046393 36046590 -106224854 - AluSg/x SINE Alu -15 297 104 1450 165 0 25 chr9 36046590 36046832 -106224612 - AluSx SINE Alu -76 236 1 1478 167 10 48 chr9 36047266 36047427 -106224017 - AluJo SINE Alu -25 287 140 2417 93 3 0 chr9 36047427 36047729 -106223715 - AluSq SINE Alu -10 303 1 1478 167 10 48 chr9 36047729 36047861 -106223583 - AluJo SINE Alu -172 140 5 660 224 63 87 chr9 36047887 36047918 -106223526 - HAL1 LINE L1 -142 2365 2335 2154 67 32 18 chr9 36047918 36048201 -106223243 - AluSg SINE Alu -23 287 1 660 224 63 87 chr9 36048201 36048519 -106222925 - HAL1 LINE L1 -172 2335 2025 2255 110 0 19 chr9 36048519 36048838 -106222606 - AluSq SINE Alu 0 313 1 660 224 63 87 chr9 36048838 36048912 -106222532 - HAL1 LINE L1 -482 2025 1951 2306 105 0 0 chr9 36048948 36049244 -106222200 - AluSx SINE Alu -16 296 1 729 279 22 26 chr9 36049277 36049506 -106221938 - L1ME3A LINE L1 -34 6136 5909 481 262 59 73 chr9 36049486 36049772 -106221672 - L1ME3A LINE L1 -823 5323 5042 * 664 106 96 0 chr9 36049798 36049892 -106221552 - Alu SINE Alu -207 104 2 1237 225 178 18 chr9 36049916 36050410 -106221034 - L1ME3A LINE L1 -270 5900 5328 435 102 0 0 chr9 36050410 36050469 -106220975 - AluYb8 SINE Alu -89 229 171 1034 145 0 0 chr9 36050471 36050616 -106220828 + AluSg/x SINE Alu 128 272 -38 640 239 39 7 chr9 36050688 36050843 -106220601 - LTR28 LTR ERV1 -467 553 394 597 230 169 11 chr9 36050880 36051080 -106220364 - LTR1 LTR ERV1 -559 226 33 1770 165 21 3 chr9 36051691 36051982 -106219462 + AluJb SINE Alu 1 296 -16 2165 91 3 14 chr9 36052129 36052455 -106218989 - AluSq SINE Alu 0 323 1 24 0 0 0 chr9 36052515 36052539 -106218905 + AT_rich Low_complexity Low_complexity 1 24 0 2299 109 6 0 chr9 36052539 36052850 -106218594 - AluSp SINE Alu 0 313 1 2184 119 0 0 chr9 36052853 36053148 -106218296 - AluSx SINE Alu -17 295 1 215 306 69 0 chr9 36053452 36053524 -106217920 + MIR SINE MIR 186 262 0 201 344 10 10 chr9 36053550 36053646 -106217798 + L2 LINE L2 2434 2529 -785 189 296 200 37 chr9 36053691 36053826 -106217618 + L2 LINE L2 2916 3072 -200 23 0 0 0 chr9 36054243 36054266 -106217178 + AT_rich Low_complexity Low_complexity 1 23 0 2158 105 0 7 chr9 36054422 36054717 -106216727 - AluY SINE Alu -18 293 1 21 0 0 0 chr9 36054777 36054798 -106216646 + AT_rich Low_complexity Low_complexity 1 21 0 1489 181 20 33 chr9 36054810 36055109 -106216335 + AluJb SINE Alu 1 295 -17 326 82 0 20 chr9 36055116 36055165 -106216279 - L1MC1 LINE L1 -19 6314 6267 2265 102 3 0 chr9 36055212 36055507 -106215937 + AluSp SINE Alu 3 298 -15 2236 121 0 0 chr9 36055598 36055903 -106215541 + AluSx SINE Alu 1 305 -7 1441 181 20 53 chr9 36056353 36056652 -106214792 - AluJb SINE Alu -13 289 1 2267 108 3 0 chr9 36056656 36056953 -106214491 - AluSx SINE Alu -14 298 1 223 239 30 0 chr9 36057216 36057283 -106214161 + (TA)n Simple_repeat Simple_repeat 2 70 0 1666 166 30 17 chr9 36057372 36057673 -106213771 - AluJo SINE Alu -7 305 1 782 75 0 0 chr9 36057723 36057817 -106213627 - AluSg SINE Alu -215 95 2 273 183 141 0 chr9 36057896 36057967 -106213477 - L1MC5 LINE L1 -272 7689 7609 239 189 0 75 chr9 36057993 36058046 -106213398 + Tigger7 DNA MER2_type 437 485 -2002 680 161 93 17 chr9 36058166 36058284 -106213160 + FLAM_A SINE Alu 1 127 -6 259 339 54 15 chr9 36058330 36058460 -106212984 - MIR SINE MIR -73 189 55 2293 91 21 0 chr9 36058785 36059070 -106212374 + AluSx SINE Alu 1 291 -21 238 161 36 18 chr9 36059318 36059339 -106212105 + AluJb SINE Alu 114 135 -167 2434 60 7 3 chr9 36059339 36059637 -106211807 + AluY SINE Alu 1 299 -12 1169 138 133 5 chr9 36059638 36059834 -106211610 + AluSg/x SINE Alu 73 293 -19 2344 63 0 3 chr9 36059886 36060171 -106211273 - AluY SINE Alu -11 300 17 312 138 0 0 chr9 36060502 36060567 -106210877 + (TC)n Simple_repeat Simple_repeat 1 65 0 1400 105 0 11 chr9 36060569 36060759 -106210685 - AluSq SINE Alu -121 192 5 495 213 63 0 chr9 36060787 36060914 -106210530 - MIR SINE MIR -30 232 98 1488 148 44 33 chr9 36060922 36060945 -106210499 + AluJb SINE Alu 8 29 -283 2375 139 49 45 chr9 36060945 36061040 -106210404 - MER83 LTR ERV1 0 448 355 1883 147 3 20 chr9 36061040 36061340 -106210104 + AluJb SINE Alu 1 295 -17 2375 139 49 45 chr9 36061340 36061690 -106209754 - MER83 LTR ERV1 -93 355 1 1488 148 44 33 chr9 36061690 36061937 -106209507 + AluJb SINE Alu 29 281 -31 180 111 0 0 chr9 36061938 36061965 -106209479 + (CAAT)n Simple_repeat Simple_repeat 2 28 0 323 236 57 38 chr9 36061967 36062073 -106209371 - MIR SINE MIR -152 110 3 1882 143 36 0 chr9 36062170 36062450 -106208994 - AluJb SINE Alu -22 290 1 1558 219 95 76 chr9 36062461 36062577 -106208867 - L1M4 LINE L1 -2962 3682 3570 1841 181 0 9 chr9 36062577 36062892 -106208552 - AluJb SINE Alu 0 312 1 1558 219 95 76 chr9 36062892 36063369 -106208075 - L1M4 LINE L1 -3074 3570 3066 1524 122 106 82 chr9 36063369 36063698 -106207746 + MER1B DNA MER1_type 1 337 0 1558 219 95 76 chr9 36063698 36063955 -106207489 - L1M4 LINE L1 -3578 3066 2815 * 2080 185 86 80 chr9 36063950 36064011 -106207433 - L1MD3 LINE L1 -166 7829 7770 1073 163 6 0 chr9 36064011 36064189 -106207255 - L1MB7 LINE L1 -19 6165 5987 2080 185 86 80 chr9 36064189 36064547 -106206897 - L1MD3 LINE L1 -225 7770 7416 416 211 33 11 chr9 36064547 36064637 -106206807 - MLT1F1 LTR MaLR -429 138 47 2080 185 86 80 chr9 36064637 36064988 -106206456 - L1MD3 LINE L1 -579 7416 6732 2109 113 10 0 chr9 36064996 36065288 -106206156 - AluSg SINE Alu -15 295 1 692 154 6 51 chr9 36065358 36065514 -106205930 - L1MB8 LINE L1 -5 6173 6025 2096 139 0 0 chr9 36065514 36065802 -106205642 + AluSx SINE Alu 2 289 -23 467 209 47 0 chr9 36065811 36065940 -106205504 - L1M4 LINE L1 -988 5158 5024 822 191 89 24 chr9 36065953 36066121 -106205323 - MER21B LTR ERV1 -138 725 547 2353 94 3 7 chr9 36066140 36066449 -106204995 + AluSc SINE Alu 1 308 -1 283 223 58 19 chr9 36066464 36066567 -106204877 - L1M4 LINE L1 -5116 1426 1320 1464 167 38 38 chr9 36066586 36066874 -106204570 + AluJb SINE Alu 1 288 -24 350 42 21 0 chr9 36066905 36066953 -106204491 + (TC)n Simple_repeat Simple_repeat 2 50 0 1722 165 24 0 chr9 36066979 36067276 -106204168 - AluJo SINE Alu 0 312 9 3976 229 57 51 chr9 36067286 36068545 -106202899 - L1M4 LINE L1 -5241 1301 35 510 221 35 73 chr9 36068561 36068811 -106202633 + L1ME4a LINE L1 5666 5913 -208 2563 67 0 0 chr9 36069081 36069380 -106202064 + AluSc SINE Alu 1 299 -10 2181 77 11 21 chr9 36070353 36070681 -106200763 - AluSg SINE Alu 0 325 1 918 294 6 6 chr9 36070684 36071004 -106200440 - L1M4 LINE L1 -3262 2884 2565 2002 145 20 0 chr9 36071218 36071522 -106199922 - AluSx SINE Alu -2 310 1 661 219 95 18 chr9 36071907 36072076 -106199368 - MLT1A2 LTR MaLR -37 337 156 1077 83 0 0 chr9 36072078 36072210 -106199234 - AluY SINE Alu -179 132 1 238 143 48 0 chr9 36072210 36072252 -106199192 - MLT1A2 LTR MaLR -204 161 118 2016 123 21 0 chr9 36072400 36072685 -106198759 - AluSg SINE Alu -18 292 2 1602 98 76 4 chr9 36073010 36073235 -106198209 + AluSg SINE Alu 1 241 -69 2217 100 0 0 chr9 36073236 36073515 -106197929 + AluSg SINE Alu 1 279 -31 2149 100 31 0 chr9 36073754 36074045 -106197399 - AluSg SINE Alu -10 300 1 429 111 0 0 chr9 36074155 36074218 -106197226 - AluS SINE Alu -255 63 1 2056 132 0 7 chr9 36074243 36074550 -106196894 + AluSx SINE Alu 1 305 0 659 166 0 5 chr9 36074707 36074864 -106196580 + AluJb SINE Alu 1 234 -78 212 171 0 0 chr9 36074864 36074899 -106196545 + (TATATG)n Simple_repeat Simple_repeat 2 36 0 373 129 0 14 chr9 36075266 36075336 -106196108 - L1MC1 LINE L1 0 6333 6265 301 60 40 0 chr9 36075807 36075857 -106195587 - L1MB5 LINE L1 -8 6166 6115 565 174 22 0 chr9 36075858 36075950 -106195494 + FRAM SINE Alu 51 144 -32 195 42 0 0 chr9 36075958 36075982 -106195462 + (TAAA)n Simple_repeat Simple_repeat 4 27 0 2605 195 13 11 chr9 36075983 36076103 -106195341 - L1MB5 LINE L1 -55 6119 6000 3319 216 93 87 chr9 36076103 36076506 -106194938 - L1MC1 LINE L1 -745 5401 5002 1870 146 14 0 chr9 36076506 36076810 -106194634 - AluSx SINE Alu 0 308 1 3319 216 93 87 chr9 36076810 36076859 -106194585 - L1MC1 LINE L1 -1144 5002 4955 265 75 0 50 chr9 36076859 36076899 -106194545 - Alu SINE Alu -264 38 1 3319 216 93 87 chr9 36076899 36077029 -106194415 - L1MC1 LINE L1 -1191 4955 4827 819 150 0 30 chr9 36077029 36077162 -106194282 + FLAM_C SINE Alu 1 129 -4 3319 216 93 87 chr9 36077162 36077311 -106194133 - L1MC1 LINE L1 -1319 4827 4680 1360 198 66 7 chr9 36077311 36077495 -106193949 - AluJo SINE Alu -7 305 96 1337 228 11 7 chr9 36077495 36077776 -106193668 + AluJb SINE Alu 1 282 -30 1360 198 66 7 chr9 36077776 36077879 -106193565 - AluJo SINE Alu -216 96 1 3319 216 93 87 chr9 36077879 36078648 -106192796 - L1MC1 LINE L1 -1466 4680 3917 2264 99 3 3 chr9 36078648 36078952 -106192492 - AluSx SINE Alu -8 304 1 3319 216 93 87 chr9 36078952 36079320 -106192124 - L1MC1 LINE L1 -2229 3917 4024 1991 121 7 26 chr9 36079320 36079626 -106191818 - AluY SINE Alu -10 301 2 3319 216 93 87 chr9 36079626 36079756 -106191688 - L1MC1 LINE L1 -2121 4025 3897 2541 39 0 0 chr9 36079904 36080189 -106191255 - AluY SINE Alu 0 311 27 2489 71 0 3 chr9 36080200 36080497 -106190947 - AluSp SINE Alu -17 296 1 2477 93 3 0 chr9 36080643 36080954 -106190490 - AluSp SINE Alu -1 312 1 2255 109 13 0 chr9 36080957 36081259 -106190185 - AluSg SINE Alu -4 306 1 38 22 0 0 chr9 36081328 36081373 -106190071 + AT_rich Low_complexity Low_complexity 1 45 0 21 23 0 47 chr9 36081467 36081490 -106189954 + AT_rich Low_complexity Low_complexity 1 23 -18 705 235 24 12 chr9 36081490 36081660 -106189784 + FAM SINE Alu 1 172 -3 21 23 0 47 chr9 36081660 36081679 -106189765 + AT_rich Low_complexity Low_complexity 23 41 0 2045 84 63 11 chr9 36082088 36082246 -106189198 - AluSx SINE Alu -13 299 151 2394 88 0 0 chr9 36082246 36082552 -106188892 - AluSg SINE Alu -4 306 1 2045 84 63 11 chr9 36082552 36082677 -106188767 - AluSx SINE Alu -161 151 1 21 0 0 0 chr9 36082755 36082776 -106188668 + AT_rich Low_complexity Low_complexity 1 21 0 502 214 38 0 chr9 36083434 36083565 -106187879 - L1MC3 LINE L1 -103 7682 7547 219 188 0 0 chr9 36083570 36083618 -106187826 + (TA)n Simple_repeat Simple_repeat 2 49 0 856 128 8 0 chr9 36083622 36083747 -106187697 - FLAM_C SINE Alu -17 126 1 380 90 0 15 chr9 36083789 36083856 -106187588 + (TCTCTG)n Simple_repeat Simple_repeat 1 66 0 816 207 14 0 chr9 36083856 36084001 -106187443 - AluJb SINE Alu -31 281 135 2101 175 58 14 chr9 36084023 36084457 -106186987 - L1MC3 LINE L1 -314 7471 7019 538 240 276 16 chr9 36084461 36084715 -106186729 - Charlie2a DNA MER1_type -877 1985 1666 1472 211 16 16 chr9 36084788 36085091 -106186353 - AluJb SINE Alu -7 305 3 834 136 0 0 chr9 36085092 36085210 -106186234 - AluJb SINE Alu -175 137 20 252 237 13 13 chr9 36085246 36085322 -106186122 + MIR SINE MIR 146 221 -41 2457 75 3 0 chr9 36085697 36085992 -106185452 + AluSp SINE Alu 1 296 -17 203 298 0 0 chr9 36088881 36088928 -106182516 + (CGTG)n Simple_repeat Simple_repeat 4 50 0 2065 128 7 0 chr9 36088959 36089300 -106182144 - AluSp SINE Alu 0 344 2 1558 186 26 0 chr9 36089634 36089903 -106181541 + AluJo SINE Alu 1 276 -36 2158 83 29 14 chr9 36090695 36091004 -106180440 - AluSp SINE Alu 0 313 1 296 276 81 49 chr9 36091160 36091283 -106180161 - MLT1K LTR MaLR -329 259 133 697 210 57 17 chr9 36091660 36091733 -106179711 - MER3 DNA MER1_type 0 209 140 1008 169 0 6 chr9 36091733 36091914 -106179530 + FAM SINE Alu 5 175 0 697 210 57 17 chr9 36091914 36092016 -106179428 - MER3 DNA MER1_type -69 140 27 2006 126 10 10 chr9 36092084 36092385 -106179059 + AluSx SINE Alu 1 301 -11 421 200 0 0 chr9 36092405 36092480 -106178964 + AluJ/FLAM SINE Alu 1 75 -237 982 69 0 0 chr9 36092480 36092596 -106178848 - AluY SINE Alu -193 118 3 2246 108 0 13 chr9 36093020 36093326 -106178118 - AluSg SINE Alu -8 302 1 438 299 8 22 chr9 36093405 36093539 -106177905 + L2 LINE L2 3136 3267 -5 2191 121 7 3 chr9 36093700 36094005 -106177439 + AluSx SINE Alu 1 306 -6 2266 85 36 13 chr9 36094006 36094312 -106177132 + AluSp SINE Alu 1 313 0 22 0 0 0 chr9 36094627 36094649 -106176795 + AT_rich Low_complexity Low_complexity 1 22 0 2416 84 3 0 chr9 36095222 36095518 -106175926 + AluSx SINE Alu 1 297 -15 2295 115 0 0 chr9 36095842 36096138 -106175306 - AluSg SINE Alu -14 296 1 1600 194 18 11 chr9 36096162 36096441 -106175003 - AluJo SINE Alu -31 281 1 2146 109 27 7 chr9 36097433 36097727 -106173717 + AluSx SINE Alu 2 301 -11 1837 161 24 0 chr9 36097734 36098025 -106173419 + AluJo SINE Alu 1 298 -14 414 227 188 81 chr9 36098530 36098865 -106172579 - L2 LINE L2 -1 3312 2942 2208 97 0 0 chr9 36098940 36099219 -106172225 + AluSg SINE Alu 1 279 -31 266 231 0 0 chr9 36100031 36100096 -106171348 + (ATG)n Simple_repeat Simple_repeat 2 66 0 1271 72 179 0 chr9 36107695 36107890 -106163554 - MER30 DNA MER1_type 0 230 1 353 273 52 58 chr9 36112530 36112599 -106158845 + L1MC4a LINE L1 5260 5328 -2480 2258 124 0 6 chr9 36112599 36112914 -106158530 + AluSq SINE Alu 1 313 0 353 273 52 58 chr9 36112914 36112998 -106158446 + L1MC4a LINE L1 5328 5412 -2396 268 288 157 53 chr9 36113031 36113335 -106158109 + L1MC4a LINE L1 5468 5832 -1976 180 0 0 0 chr9 36113335 36113355 -106158089 + (CAA)n Simple_repeat Simple_repeat 2 21 0 268 288 157 53 chr9 36113355 36113484 -106157960 + L1MC4a LINE L1 5832 5946 -1862 2501 89 0 0 chr9 36113495 36113798 -106157646 + AluSg SINE Alu 1 303 -7 1153 197 57 9 chr9 36113963 36114191 -106157253 - MER8 DNA MER2_type 0 239 1 1379 131 181 23 chr9 36118187 36118446 -106152998 - AluSg SINE Alu 0 300 1 229 368 0 21 chr9 36118466 36118561 -106152883 - L3 LINE CR1 -494 1083 991 1260 180 10 0 chr9 36118953 36119159 -106152285 - AluJb SINE Alu -102 210 3 2159 102 3 31 chr9 36119169 36119463 -106151981 - AluSx SINE Alu -16 296 11 407 151 0 27 chr9 36119465 36119560 -106151884 + AluS SINE Alu 224 311 0 353 281 26 0 chr9 36119567 36119681 -106151763 + L1M4 LINE L1 3305 3421 -2725 668 215 7 0 chr9 36119697 36119832 -106151612 + FLAM_A SINE Alu 6 141 -1 507 295 0 6 chr9 36119836 36119992 -106151452 + L1M4 LINE L1 3454 3608 -2538 314 233 23 58 chr9 36120018 36120104 -106151340 + HAL1 LINE L1 2239 2321 -186 1906 153 24 0 chr9 36120208 36120502 -106150942 + AluSx SINE Alu 5 305 -7 1867 121 17 47 chr9 36120505 36120803 -106150641 + AluSq SINE Alu 1 289 -24 1681 187 16 3 chr9 36120868 36121173 -106150271 - AluJb SINE Alu -3 309 1 817 185 0 15 chr9 36121175 36121310 -106150134 - AluJo/FLAM SINE Alu -179 133 1 2470 74 3 0 chr9 36121394 36121693 -106149751 + AluSx SINE Alu 1 300 -12 2273 101 3 19 chr9 36122069 36122376 -106149068 - AluSx SINE Alu -8 304 3 358 174 51 2 chr9 36122433 36122612 -106148832 + AluJb SINE Alu 79 298 -4 294 83 0 0 chr9 36122648 36122684 -106148760 + (T)n Simple_repeat Simple_repeat 1 36 0 2107 90 65 0 chr9 36122784 36123062 -106148382 - AluSg SINE Alu -14 296 1 2264 93 4 0 chr9 36123062 36123339 -106148105 - AluSp SINE Alu -34 279 1 774 203 0 0 chr9 36123339 36123472 -106147972 - AluJo SINE Alu -177 135 3 23 0 0 0 chr9 36123474 36123497 -106147947 + AT_rich Low_complexity Low_complexity 1 23 0 867 170 7 7 chr9 36123527 36123674 -106147770 - LTR39 LTR ERV1 0 783 637 2336 73 0 14 chr9 36123675 36124005 -106147439 + AluY SINE Alu 1 326 0 1572 199 3 10 chr9 36124036 36124332 -106147112 - AluJb SINE Alu -18 294 1 1162 149 22 0 chr9 36124344 36124525 -106146919 - AluSg/x SINE Alu -2 308 124 2127 104 0 14 chr9 36124542 36124829 -106146615 - AluSg SINE Alu -27 283 1 1925 157 7 3 chr9 36124837 36125142 -106146302 - AluJb SINE Alu -6 306 1 2821 100 5 2 chr9 36125159 36125570 -106145874 - MER75 DNA T2_type 0 514 103 366 155 0 0 chr9 36125568 36125626 -106145818 - AluJ/FLAM SINE Alu -240 62 5 * 1722 87 0 0 chr9 36125693 36125901 -106145543 + AluSx SINE Alu 1 208 -104 316 51 0 0 chr9 36125949 36125988 -106145456 + Alu SINE Alu 6 44 -259 649 73 0 0 chr9 36125991 36126073 -106145371 + AluSp/q SINE Alu 213 294 -19 831 155 0 0 chr9 36126073 36126189 -106145255 - AluJo/FLAM SINE Alu -185 117 2 195 42 0 0 chr9 36126210 36126234 -106145210 + (TTTCC)n Simple_repeat Simple_repeat 2 25 0 2122 113 24 7 chr9 36126242 36126534 -106144910 - AluSx SINE Alu -15 297 1 1869 72 4 4 chr9 36126860 36127095 -106144349 - AluY SINE Alu -14 297 63 1990 129 7 42 chr9 36127184 36127326 -106144118 + AluSx SINE Alu 3 148 -164 2406 72 3 0 chr9 36127326 36127619 -106143825 + AluY SINE Alu 1 294 -17 1990 129 7 42 chr9 36127619 36127786 -106143658 + AluSx SINE Alu 148 301 -11 22 56 0 0 chr9 36127837 36127873 -106143571 + AT_rich Low_complexity Low_complexity 1 36 0 797 157 0 0 chr9 36127873 36127988 -106143456 - FLAM_C SINE Alu -15 118 4 993 194 18 6 chr9 36128101 36128271 -106143173 + FAM SINE Alu 2 173 -2 2353 79 0 10 chr9 36128431 36128736 -106142708 + AluY SINE Alu 1 302 -9 233 300 0 0 chr9 36129047 36129107 -106142337 - MIR SINE MIR -133 129 70 322 141 42 0 chr9 36129754 36129825 -106141619 + GA-rich Low_complexity Low_complexity 2 75 0 1457 106 0 0 chr9 36129957 36130145 -106141299 - AluSx SINE Alu -11 299 112 521 116 0 0 chr9 36130146 36130215 -106141229 - AluSx SINE Alu -243 70 2 933 146 0 0 chr9 36130845 36130982 -106140462 + AluSq/x SINE Alu 1 137 -176 2345 84 13 7 chr9 36130982 36131292 -106140152 + AluSp SINE Alu 1 312 -1 2250 123 0 0 chr9 36131318 36131618 -106139826 + AluSx SINE Alu 1 300 -12 415 294 40 0 chr9 36131618 36131744 -106139700 - L1ME2 LINE L1 -122 6042 5912 368 150 4 12 chr9 36131779 36132007 -106139437 + AluJo SINE Alu 1 302 0 1629 150 20 41 chr9 36132030 36132324 -106139120 - AluJb SINE Alu -23 289 2 2280 117 3 0 chr9 36132335 36132643 -106138801 - AluSx SINE Alu -3 309 1 1882 196 29 5 chr9 36132686 36133069 -106138375 - MER65C LTR ERV1 0 461 70 407 193 41 0 chr9 36133084 36133200 -106138244 - AluSg/x SINE Alu -17 283 216 680 89 0 0 chr9 36133200 36133290 -106138154 - AluS SINE Alu -221 91 2 1133 88 0 0 chr9 36133373 36133510 -106137934 + AluSq/x SINE Alu 1 137 -176 1627 95 0 47 chr9 36133516 36133576 -106137868 + AluSg/x SINE Alu 82 143 -167 1911 50 0 0 chr9 36133576 36133794 -106137650 + AluY SINE Alu 82 299 -12 1627 95 0 47 chr9 36133794 36133965 -106137479 + AluSg/x SINE Alu 143 302 -8 198 0 0 0 chr9 36137442 36137464 -106133980 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 296 269 21 15 chr9 36138732 36138847 -106132597 + MIR SINE MIR 79 193 -15 229 284 68 14 chr9 36139360 36139434 -106132010 - Charlie8 DNA MER1_type -2190 227 150 2159 103 58 0 chr9 36139437 36139729 -106131715 + AluSx SINE Alu 2 310 -2 2360 155 22 50 chr9 36139827 36140285 -106131159 - MER65A LTR ERV1 0 445 1 1687 177 3 45 chr9 36140508 36140819 -106130625 - AluJo SINE Alu -14 298 1 236 303 56 14 chr9 36140889 36141031 -106130413 + L1M LINE L1 5255 5402 -2406 180 0 0 0 chr9 36141033 36141053 -106130391 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 2379 62 0 17 chr9 36141053 36141345 -106130099 - AluY SINE Alu -24 287 1 1229 64 0 0 chr9 36141349 36141506 -106129938 - L1PA5 LINE L1 0 6154 5998 1863 166 10 0 chr9 36141511 36141800 -106129644 - AluJb SINE Alu -4 308 17 273 267 0 0 chr9 36141970 36142086 -106129358 + C-rich Low_complexity Low_complexity 1 116 0 209 232 14 0 chr9 36142194 36142263 -106129181 + C-rich Low_complexity Low_complexity 6 75 0 316 78 39 0 chr9 36142373 36142424 -106129020 + Alu SINE Alu 245 297 -5 1837 170 10 0 chr9 36142449 36142738 -106128706 + AluJb SINE Alu 17 308 -4 1229 64 0 0 chr9 36142743 36142900 -106128544 + L1PA5 LINE L1 5998 6154 0 2348 62 0 17 chr9 36142904 36143193 -106128251 + AluY SINE Alu 1 284 -27 180 0 0 0 chr9 36143197 36143217 -106128227 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 1687 177 3 45 chr9 36143430 36143741 -106127703 + AluJo SINE Alu 1 298 -14 2360 155 22 50 chr9 36143964 36144422 -106127022 + MER65A LTR ERV1 1 445 0 2243 89 58 0 chr9 36144520 36144811 -106126633 - AluSg SINE Alu -2 308 1 2264 93 4 0 chr9 36144811 36145088 -106126356 - AluSp SINE Alu -34 279 1 774 203 0 0 chr9 36145088 36145221 -106126223 - AluJo SINE Alu -177 135 3 243 189 0 0 chr9 36145225 36145276 -106126168 - FLAM_A SINE Alu -2 131 81 867 170 7 7 chr9 36145276 36145423 -106126021 - LTR39 LTR ERV1 0 783 637 2429 63 0 17 chr9 36145424 36145723 -106125721 + AluY SINE Alu 1 294 -17 1147 138 6 0 chr9 36145723 36145890 -106125554 + AluSg/x SINE Alu 132 299 -11 22 56 0 0 chr9 36145941 36145977 -106125467 + AT_rich Low_complexity Low_complexity 1 36 0 797 157 0 0 chr9 36145977 36146092 -106125352 - FLAM_C SINE Alu -15 118 4 993 194 18 6 chr9 36146205 36146375 -106125069 + FAM SINE Alu 2 173 -2 2353 79 0 10 chr9 36146535 36146840 -106124604 + AluY SINE Alu 1 302 -9 236 300 0 0 chr9 36147151 36147211 -106124233 - MIR SINE MIR -133 129 70 2292 120 3 0 chr9 36147241 36147542 -106123902 - AluSp SINE Alu -11 302 1 1972 93 52 38 chr9 36147556 36147847 -106123597 - AluSc SINE Alu -14 295 1 2351 101 0 0 chr9 36148031 36148328 -106123116 - AluSq SINE Alu -16 297 1 2396 96 0 10 chr9 36148506 36148820 -106122624 - AluSx SINE Alu -1 311 1 2135 114 0 16 chr9 36148852 36149022 -106122422 - AluSg SINE Alu -8 302 138 2477 31 38 3 chr9 36149022 36149309 -106122135 - AluY SINE Alu -12 299 3 2135 114 0 16 chr9 36149309 36149444 -106122000 - AluSg SINE Alu -172 138 2 308 273 115 60 chr9 36149634 36149817 -106121627 - MIR SINE MIR 0 262 70 561 138 41 24 chr9 36149936 36150059 -106121385 - 7SK RNA RNA -68 125 1 684 202 8 0 chr9 36152208 36152327 -106119117 - FLAM_A SINE Alu -13 120 1 2472 59 20 3 chr9 36153354 36153658 -106117786 - AluY SINE Alu -1 310 2 1948 115 25 14 chr9 36154355 36154641 -106116803 + AluSg SINE Alu 1 289 -21 2238 88 16 13 chr9 36154653 36154961 -106116483 - AluY SINE Alu -2 309 1 2029 128 0 3 chr9 36155137 36155444 -106116000 - AluSx SINE Alu 0 306 1 993 164 30 0 chr9 36155446 36155611 -106115833 - AluSg/x SINE Alu -9 301 132 2426 70 0 13 chr9 36155611 36155911 -106115533 - AluY SINE Alu -15 296 1 1248 190 138 8 chr9 36155913 36156181 -106115263 - AluYa8 SINE Alu -7 303 1 1536 184 58 7 chr9 36156233 36156510 -106114934 + AluJo SINE Alu 1 291 -21 1930 133 39 11 chr9 36156564 36156850 -106114594 + AluJb SINE Alu 5 298 -14 1617 167 37 0 chr9 36156947 36157217 -106114227 - AluJo SINE Alu -18 294 15 733 142 9 0 chr9 36157404 36157510 -106113934 - FLAM_C SINE Alu -25 118 12 2159 114 7 3 chr9 36157530 36157828 -106113616 - AluSg SINE Alu -11 299 1 348 216 106 76 chr9 36157929 36157990 -106113454 - L1ME1 LINE L1 -262 5904 5846 2129 125 0 3 chr9 36157990 36158285 -106113159 - AluSx SINE Alu -18 294 1 1517 128 4 37 chr9 36158295 36158538 -106112906 - AluSp SINE Alu -4 309 75 2178 107 3 38 chr9 36158538 36158856 -106112588 - AluSq SINE Alu -6 307 1 348 216 106 76 chr9 36158856 36159111 -106112333 - L1ME1 LINE L1 -327 5839 5566 607 232 73 0 chr9 36159120 36159284 -106112160 - MER105 DNA DNA -1 203 28 270 153 68 17 chr9 36159304 36159363 -106112081 - L1ME1 LINE L1 -648 5516 5455 602 174 0 0 chr9 36159455 36159553 -106111891 - FLAM_C SINE Alu -35 108 11 233 261 34 0 chr9 36159563 36159651 -106111793 - L1MDa LINE L1 -3968 2572 2482 1292 120 16 0 chr9 36159679 36159852 -106111592 - AluSg SINE Alu -6 304 126 2282 84 7 7 chr9 36159852 36160150 -106111294 - AluSp SINE Alu -15 298 1 6713 68 15 10 chr9 36160162 36161727 -106109717 - SVA Other Other -723 1386 46 962 125 0 0 chr9 36161730 36161858 -106109586 - AluSg SINE Alu -182 128 1 1336 162 103 33 chr9 36161858 36162129 -106109315 - AluJb SINE Alu -8 304 15 1908 123 6 72 chr9 36162592 36162739 -106108705 + AluSx SINE Alu 1 115 -197 2331 92 7 0 chr9 36162739 36163044 -106108400 + AluY SINE Alu 1 307 -4 1908 123 6 72 chr9 36163044 36163228 -106108216 + AluSx SINE Alu 115 310 -2 195 257 159 18 chr9 36163340 36163453 -106107991 - L2 LINE L2 -5 3308 3180 2333 88 3 10 chr9 36163610 36163915 -106107529 + AluSp SINE Alu 1 303 -10 596 170 45 9 chr9 36164001 36164113 -106107331 - AluJb SINE Alu -7 305 190 1119 160 0 21 chr9 36164317 36164504 -106106940 - AluSg/x SINE Alu -5 305 123 2194 104 0 3 chr9 36164511 36164808 -106106636 - AluSx SINE Alu -16 296 1 2235 109 3 0 chr9 36165136 36165440 -106106004 - AluSc SINE Alu -4 305 1 2288 107 3 0 chr9 36165997 36166295 -106105149 + AluSq SINE Alu 1 299 -14 819 184 0 0 chr9 36166312 36166453 -106104991 + AluSg/x SINE Alu 158 298 -14 3811 95 44 2 chr9 36166454 36167003 -106104441 - L1MA1 LINE L1 -175 6127 5556 2038 132 27 3 chr9 36167097 36167392 -106104052 - AluSx SINE Alu -10 302 1 1621 151 53 28 chr9 36167895 36168179 -106103265 - AluJo SINE Alu -21 291 1 421 152 0 25 chr9 36168227 36168306 -106103138 - AluJ/FRAM SINE Alu 0 302 226 541 131 61 20 chr9 36168306 36168405 -106103039 + AluSg/x SINE Alu 102 204 -108 1852 90 8 0 chr9 36168427 36168661 -106102783 + AluSq SINE Alu 1 236 -77 947 131 6 120 chr9 36168661 36168740 -106102704 - AluSx SINE Alu -150 162 114 1664 105 9 0 chr9 36168740 36168968 -106102476 - AluSq SINE Alu -14 299 70 947 131 6 120 chr9 36168968 36169071 -106102373 - AluSx SINE Alu -198 114 1 2194 105 3 19 chr9 36169075 36169389 -106102055 - AluY SINE Alu -2 309 1 1504 151 6 70 chr9 36169394 36169559 -106101885 - AluJb SINE Alu -20 292 118 183 42 0 0 chr9 36169559 36169583 -106101861 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2384 52 0 14 chr9 36169583 36169870 -106101574 - AluY SINE Alu -28 283 1 1504 151 6 70 chr9 36169870 36170015 -106101429 - AluJb SINE Alu -192 120 1 2288 103 3 0 chr9 36170025 36170326 -106101118 - AluSg SINE Alu -8 302 1 878 140 0 22 chr9 36170344 36170480 -106100964 - FLAM_C SINE Alu 0 133 1 2196 107 10 7 chr9 36170490 36170789 -106100655 - AluSq SINE Alu -13 300 1 471 202 55 9 chr9 36170790 36170899 -106100545 - L1M4 LINE L1 -491 5693 5580 884 218 31 35 chr9 36170902 36171131 -106100313 - AluJo SINE Alu -13 299 72 236 157 235 0 chr9 36171131 36171182 -106100262 - Charlie3 DNA MER1_type -2641 69 7 2058 123 3 3 chr9 36171355 36171685 -106099759 + AluSq SINE Alu 1 330 0 2384 83 0 19 chr9 36172158 36172471 -106098973 - AluY SINE Alu -4 307 1 770 151 0 50 chr9 36172473 36172612 -106098832 - AluJo/FLAM SINE Alu -170 132 1 1423 117 5 10 chr9 36172643 36172848 -106098596 - AluSx SINE Alu -108 204 1 783 211 119 23 chr9 36173191 36173409 -106098035 + MIR SINE MIR 1 239 -23 734 178 0 22 chr9 36174172 36174307 -106097137 + FLAM_C SINE Alu 2 133 0 2218 111 0 10 chr9 36175052 36175349 -106096095 - AluSx SINE Alu -18 294 1 2060 84 62 0 chr9 36175688 36175963 -106095481 - AluSp SINE Alu -17 296 5 2274 100 3 0 chr9 36175979 36176280 -106095164 - AluY SINE Alu -9 302 1 2236 94 17 3 chr9 36176800 36177099 -106094345 - AluSc SINE Alu -6 303 1 2154 125 10 10 chr9 36177306 36177611 -106093833 + AluSx SINE Alu 1 305 -7 566 184 18 9 chr9 36177611 36177720 -106093724 - FLAM_A SINE Alu -32 110 1 2099 135 0 0 chr9 36177779 36178082 -106093362 - AluSq SINE Alu -10 303 1 2207 124 0 0 chr9 36178111 36178409 -106093035 + AluSx SINE Alu 1 298 -14 2186 75 0 11 chr9 36179101 36179381 -106092063 + AluY SINE Alu 22 298 -13 2084 120 3 17 chr9 36179416 36179715 -106091729 + AluSx SINE Alu 1 295 -17 1031 77 28 0 chr9 36179726 36179869 -106091575 + Tigger3(Golem) DNA MER2_type 2191 2337 -692 2214 92 34 7 chr9 36179869 36180161 -106091283 - AluSg SINE Alu -10 300 1 330 26 0 0 chr9 36180311 36180350 -106091094 + (TG)n Simple_repeat Simple_repeat 2 40 0 1449 181 22 4 chr9 36180351 36180622 -106090822 - L1MB3 LINE L1 -14 6169 5894 2028 113 0 15 chr9 36180642 36180916 -106090528 - AluSg SINE Alu -36 274 5 1569 208 7 91 chr9 36180922 36181147 -106090297 - L1MA6 LINE L1 -394 5906 5738 2497 70 0 10 chr9 36181147 36181461 -106089983 - AluY SINE Alu 0 311 1 1569 208 7 91 chr9 36181461 36181697 -106089747 - L1MA6 LINE L1 -562 5738 5484 410 117 17 0 chr9 36181722 36181782 -106089662 + U7 snRNA snRNA 2 62 -1 658 196 7 58 chr9 36181862 36182000 -106089444 - FLAM_A SINE Alu -2 131 1 209 245 0 0 chr9 36182033 36182082 -106089362 + L2 LINE L2 3264 3312 -1 2352 84 0 3 chr9 36182100 36182397 -106089047 - AluY SINE Alu -15 296 1 207 176 0 0 chr9 36183009 36183043 -106088401 + T-rich Low_complexity Low_complexity 4 37 0 2386 93 0 10 chr9 36183185 36183497 -106087947 + AluSx SINE Alu 1 309 -3 2276 106 7 0 chr9 36183708 36184011 -106087433 - AluSc SINE Alu -4 305 1 317 250 50 0 chr9 36184024 36184104 -106087340 - MER58 DNA MER1_type -1 2419 131 857 92 59 0 chr9 36184115 36184234 -106087210 - AluSq/x SINE Alu -186 126 1 1329 87 6 27 chr9 36184359 36184542 -106086902 - AluSp SINE Alu -12 301 123 948 52 9 0 chr9 36184551 36184666 -106086778 - AluSc SINE Alu -18 291 176 769 201 0 70 chr9 36184694 36184756 -106086688 + L1 LINE L1 3822 3887 -2259 2262 86 3 10 chr9 36184756 36185058 -106086386 + AluY SINE Alu 1 300 -11 769 201 0 70 chr9 36185058 36185194 -106086250 + L1 LINE L1 3887 4006 -2140 1640 172 38 14 chr9 36185194 36185484 -106085960 - AluJb SINE Alu -15 297 1 1197 150 35 9 chr9 36185491 36185717 -106085727 + L1 LINE L1 4119 4350 -1796 320 321 73 68 chr9 36185880 36186003 -106085441 - HAL1b LINE L1 -749 599 478 1548 190 20 27 chr9 36186003 36186298 -106085146 - AluJo SINE Alu -19 293 1 320 321 73 68 chr9 36186298 36186433 -106085011 - HAL1b LINE L1 -870 478 345 2342 99 3 10 chr9 36186433 36186747 -106084697 - AluSx SINE Alu 0 312 1 320 321 73 68 chr9 36186747 36187045 -106084399 - HAL1b LINE L1 -1003 345 39 1438 108 66 150 chr9 36187237 36187410 -106084034 - AluSx SINE Alu -6 306 173 2277 115 0 0 chr9 36187410 36187715 -106083729 - AluSx SINE Alu -7 305 1 1438 108 66 150 chr9 36187715 36187875 -106083569 - AluSx SINE Alu -139 173 1 2517 65 0 7 chr9 36187886 36188195 -106083249 - AluY SINE Alu -4 307 1 992 185 15 10 chr9 36188195 36188390 -106083054 - AluJb SINE Alu -12 300 105 2355 105 3 0 chr9 36188676 36188980 -106082464 + AluSq SINE Alu 1 305 -8 1590 128 0 4 chr9 36188989 36189215 -106082229 + AluSq SINE Alu 1 225 -88 742 95 19 0 chr9 36189215 36189320 -106082124 + AluSg/x SINE Alu 190 296 -14 1550 151 106 7 chr9 36189365 36189649 -106081795 + AluSx SINE Alu 1 312 0 1208 216 16 66 chr9 36189708 36190013 -106081431 + AluJb SINE Alu 1 290 -22 2455 71 7 0 chr9 36190021 36190318 -106081126 + AluSg SINE Alu 1 299 -11 1393 196 52 15 chr9 36190442 36190713 -106080731 + AluJb SINE Alu 1 281 -31 23 33 0 0 chr9 36190718 36190748 -106080696 + AT_rich Low_complexity Low_complexity 1 30 0 1774 202 19 60 chr9 36191027 36191508 -106079936 + MER65C LTR ERV1 1 461 0 449 236 111 14 chr9 36192131 36192275 -106079169 - L1MD3 LINE L1 -8 7987 7830 1254 170 9 106 chr9 36192417 36192746 -106078698 + AluSx SINE Alu 2 298 -4 308 77 0 0 chr9 36192747 36192786 -106078658 + Alu SINE Alu 246 284 -16 492 18 0 0 chr9 36192788 36192845 -106078599 + (CATA)n Simple_repeat Simple_repeat 4 60 0 812 163 15 0 chr9 36192845 36192980 -106078464 + AluSg/x SINE Alu 158 294 -16 984 93 16 0 chr9 36193000 36193129 -106078315 + AluJb SINE Alu 2 132 -180 21 0 0 0 chr9 36193157 36193178 -106078266 + AT_rich Low_complexity Low_complexity 1 21 0 607 134 104 75 chr9 36193359 36193493 -106077951 - FLAM_C SINE Alu -4 139 2 1626 178 15 0 chr9 36194285 36194555 -106076889 - AluJo SINE Alu -17 295 22 203 327 0 18 chr9 36194937 36194992 -106076452 + MIR SINE MIR 19 72 -136 325 298 10 10 chr9 36195191 36195295 -106076149 + MIR3 SINE MIR 3 106 -102 637 151 0 59 chr9 36195638 36195757 -106075687 - AluJ SINE Alu -12 300 189 803 148 111 0 chr9 36195758 36195893 -106075551 - AluJ SINE Alu -162 150 1 226 145 14 14 chr9 36197022 36197091 -106074353 + (TA)n Simple_repeat Simple_repeat 2 70 0 68 0 0 0 chr9 36197091 36197159 -106074285 + AT_rich Low_complexity Low_complexity 1 68 0 465 102 66 6 chr9 36197159 36197326 -106074118 + (TA)n Simple_repeat Simple_repeat 2 178 0 2127 136 7 0 chr9 36197326 36197621 -106073823 - AluSx SINE Alu -15 297 1 2235 110 0 3 chr9 36198502 36198803 -106072641 + AluSg SINE Alu 1 300 -10 1139 143 29 43 chr9 36199021 36199231 -106072213 - AluJb SINE Alu -21 291 85 2227 107 0 23 chr9 36200113 36200285 -106071159 - AluSg SINE Alu -8 302 139 2452 69 7 3 chr9 36200285 36200588 -106070856 - AluSp SINE Alu -9 304 1 2227 107 0 23 chr9 36200588 36200724 -106070720 - AluSg SINE Alu -171 139 1 2002 112 0 53 chr9 36201390 36201693 -106069751 - AluSx SINE Alu -25 287 1 352 266 52 39 chr9 36201696 36201759 -106069685 - L1ME LINE L1 -459 5662 5601 2194 124 0 3 chr9 36201759 36202058 -106069386 + AluSx SINE Alu 1 298 -14 352 266 52 39 chr9 36202058 36202148 -106069296 - L1ME LINE L1 -520 5601 5507 2542 58 0 0 chr9 36203196 36203488 -106067956 + AluY SINE Alu 2 293 -18 1436 163 17 57 chr9 36203488 36203788 -106067656 - AluJo SINE Alu -23 289 2 1233 189 42 77 chr9 36203793 36203951 -106067493 - AluJo SINE Alu -10 302 140 2487 57 0 7 chr9 36203951 36204251 -106067193 - AluY SINE Alu -13 298 1 1233 189 42 77 chr9 36204251 36204296 -106067148 - AluJo SINE Alu -172 140 95 2187 114 3 10 chr9 36204296 36204602 -106066842 + AluSx SINE Alu 1 304 -8 1233 189 42 77 chr9 36204602 36204710 -106066734 - AluJo SINE Alu -217 95 1 2069 116 3 3 chr9 36204757 36205042 -106066402 - AluSq SINE Alu -28 285 1 1699 174 0 41 chr9 36205094 36205236 -106066208 + AluJb SINE Alu 1 147 -165 2329 110 7 0 chr9 36205236 36205544 -106065900 + AluSx SINE Alu 1 310 -2 1699 174 0 41 chr9 36205544 36205717 -106065727 + AluJb SINE Alu 147 303 -9 2674 54 0 6 chr9 36205771 36206084 -106065360 + AluY SINE Alu 1 311 0 2603 54 0 22 chr9 36206094 36206411 -106065033 + AluY SINE Alu 1 310 -1 2583 54 0 0 chr9 36206417 36206711 -106064733 + AluY SINE Alu 1 294 -17 819 150 0 0 chr9 36206798 36206918 -106064526 + FLAM_C SINE Alu 1 120 -23 602 272 114 33 chr9 36206922 36207282 -106064162 + L1ME4a LINE L1 5513 5901 -220 2528 57 0 7 chr9 36207359 36207658 -106063786 + AluSp SINE Alu 1 297 -16 2223 98 3 0 chr9 36207754 36208041 -106063403 + AluSg SINE Alu 7 294 -16 551 130 94 94 chr9 36208190 36208328 -106063116 + MLT1B LTR MaLR 4 141 -249 2153 123 3 0 chr9 36208346 36208646 -106062798 - AluSx SINE Alu -11 301 1 21 0 0 0 chr9 36208646 36208667 -106062777 + AT_rich Low_complexity Low_complexity 1 21 0 1874 99 0 8 chr9 36208672 36208914 -106062530 - AluSc SINE Alu -69 240 1 916 120 8 0 chr9 36208920 36209045 -106062399 - FLAM_C SINE Alu -17 126 1 607 155 0 78 chr9 36209081 36209210 -106062234 + MER2 DNA MER2_type 2 120 -225 2082 140 0 6 chr9 36209212 36209526 -106061918 - AluSx SINE Alu 0 312 1 367 313 0 52 chr9 36209612 36209671 -106061773 + L2 LINE L2 3141 3202 -70 800 192 0 0 chr9 36209671 36209801 -106061643 - FLAM_C SINE Alu -3 130 1 367 313 0 52 chr9 36209801 36209875 -106061569 + L2 LINE L2 3202 3267 -5 586 153 31 0 chr9 36210192 36210290 -106061154 + AluJb SINE Alu 54 154 -158 2203 64 39 4 chr9 36210741 36211021 -106060423 - AluY SINE Alu -21 290 1 723 104 59 82 chr9 36211273 36211341 -106060103 + AluJo/FLAM SINE Alu 1 66 -236 2339 100 0 0 chr9 36211341 36211640 -106059804 - AluSc SINE Alu -10 299 1 723 104 59 82 chr9 36211640 36211706 -106059738 + AluJo/FLAM SINE Alu 66 132 -170 180 213 21 0 chr9 36211857 36211904 -106059540 - MIR SINE MIR -111 151 104 2482 82 3 0 chr9 36212237 36212540 -106058904 + AluSg SINE Alu 1 304 -6 2334 82 0 10 chr9 36212543 36212849 -106058595 + AluY SINE Alu 1 303 -8 2116 125 6 10 chr9 36213068 36213381 -106058063 + AluSx SINE Alu 1 312 0 950 164 14 0 chr9 36213480 36213626 -106057818 + AluSq/x SINE Alu 2 149 -164 1373 195 84 3 chr9 36213659 36213764 -106057680 + AluJb SINE Alu 3 98 -214 180 0 0 0 chr9 36213764 36213784 -106057660 + (TA)n Simple_repeat Simple_repeat 1 20 0 1373 195 84 3 chr9 36213784 36213965 -106057479 + AluJb SINE Alu 98 312 0 415 202 95 0 chr9 36213987 36214071 -106057373 + MER63 DNA MER1_type 655 746 -315 1932 148 3 0 chr9 36214078 36214395 -106057049 + AluSx SINE Alu 1 318 0 517 200 27 0 chr9 36214481 36214591 -106056853 + MIR SINE MIR 94 206 -56 436 266 8 24 chr9 36214639 36214763 -106056681 + MIR3 SINE MIR 66 187 -21 1943 92 75 58 chr9 36214928 36215221 -106056223 + AluSx SINE Alu 1 298 -14 2312 102 7 7 chr9 36215243 36215546 -106055898 + AluSx SINE Alu 1 303 -9 371 254 73 0 chr9 36216175 36216328 -106055116 - MIR3 SINE MIR -6 202 40 229 185 259 0 chr9 36216346 36216400 -106055044 - LTR33 LTR ERVL -2 519 452 2243 97 10 0 chr9 36216579 36216868 -106054576 - AluSx SINE Alu -20 292 1 291 263 256 8 chr9 36216877 36217010 -106054434 - LTR33 LTR ERVL -343 178 13 261 0 0 0 chr9 36217030 36217059 -106054385 + (TTA)n Simple_repeat Simple_repeat 2 30 0 500 130 0 50 chr9 36217085 36217185 -106054259 + AluJ/FRAM SINE Alu 217 311 -1 184 363 33 11 chr9 36218198 36218289 -106053155 - MIR SINE MIR -150 112 20 1507 194 21 21 chr9 36218328 36218617 -106052827 - AluJo SINE Alu -19 293 5 1299 157 4 22 chr9 36218842 36219071 -106052373 + AluJb SINE Alu 75 299 -13 180 304 0 0 chr9 36219342 36219388 -106052056 - L2 LINE L2 -223 3049 3004 2490 59 3 34 chr9 36219491 36219811 -106051633 - AluY SINE Alu 0 311 2 1698 178 31 0 chr9 36219945 36220237 -106051207 + AluJb SINE Alu 1 301 -11 598 109 36 0 chr9 36220336 36220473 -106050971 + (TA)n Simple_repeat Simple_repeat 2 143 0 1334 202 23 23 chr9 36220555 36220812 -106050632 - AluJb SINE Alu -55 257 1 243 239 0 0 chr9 36220840 36220886 -106050558 + Alu SINE Alu 57 102 -200 270 138 0 0 chr9 36220894 36220952 -106050492 + (GGAA)n Simple_repeat Simple_repeat 3 60 0 2227 107 0 23 chr9 36221964 36222136 -106049308 - AluSg SINE Alu -8 302 139 2452 69 7 3 chr9 36222136 36222439 -106049005 - AluSp SINE Alu -9 304 1 2227 107 0 23 chr9 36222439 36222575 -106048869 - AluSg SINE Alu -171 139 1 2054 102 0 53 chr9 36223241 36223544 -106047900 - AluSx SINE Alu -25 287 1 2775 157 25 50 chr9 36223544 36223908 -106047536 - L1MA4A LINE L1 -230 6073 5728 1099 126 0 16 chr9 36223908 36224089 -106047355 + L1MA4A LINE L1 6124 6302 -1 2775 157 25 50 chr9 36224089 36224322 -106047122 - L1MA4A LINE L1 -575 5728 5491 588 200 0 0 chr9 36224341 36224436 -106047008 - FRAM SINE Alu -62 114 20 1095 133 45 27 chr9 36224436 36224590 -106046854 - L1MA4A LINE L1 -746 5400 5331 1619 157 10 64 chr9 36224590 36224903 -106046541 - AluJo SINE Alu -16 296 1 1095 133 45 27 chr9 36224903 36225017 -106046427 - L1MA4A LINE L1 -815 5331 5221 1880 151 28 0 chr9 36225080 36225365 -106046079 + AluSx SINE Alu 1 293 -19 2142 114 13 7 chr9 36226106 36226413 -106045031 + AluSg SINE Alu 1 309 -1 311 202 12 0 chr9 36227117 36227201 -106044243 + CT-rich Low_complexity Low_complexity 3 87 0 1370 191 116 4 chr9 36227358 36227625 -106043819 + AluJo SINE Alu 2 298 -14 2154 103 0 27 chr9 36227699 36228000 -106043444 + AluSx SINE Alu 1 293 -19 900 125 125 12 chr9 36228535 36228680 -106042764 - AluSc SINE Alu -13 296 169 1953 141 7 0 chr9 36228680 36228977 -106042467 - AluSx SINE Alu -13 299 1 2076 123 7 13 chr9 36228977 36229285 -106042159 - AluSx SINE Alu -6 306 1 900 125 125 12 chr9 36229285 36229298 -106042146 - AluSc SINE Alu -139 170 119 2288 115 0 0 chr9 36229426 36229731 -106041713 - AluSx SINE Alu -7 305 1 638 93 0 0 chr9 36229821 36229907 -106041537 - AluSq SINE Alu -17 296 211 1089 91 0 7 chr9 36229907 36230050 -106041394 - AluSq SINE Alu -162 150 9 1875 148 7 13 chr9 36230152 36230457 -106040987 - AluSx SINE Alu -9 303 1 731 242 129 23 chr9 36230482 36230784 -106040660 - L1MC4 LINE L1 -11 8031 7698 2239 109 7 0 chr9 36230784 36231077 -106040367 - AluSx SINE Alu -17 295 1 1457 120 0 14 chr9 36232876 36233093 -106038351 - AluSq SINE Alu -6 307 94 1982 144 3 0 chr9 36233675 36233966 -106037478 + AluSp SINE Alu 15 306 -7 708 137 111 0 chr9 36234021 36234138 -106037306 + FLAM_C SINE Alu 2 131 -12 784 158 0 43 chr9 36234209 36234348 -106037096 + AluJo SINE Alu 3 135 -177 2059 140 3 3 chr9 36234372 36234672 -106036772 + AluSx SINE Alu 3 302 -10 297 126 97 97 chr9 36234693 36234782 -106036662 - L1MD3 LINE L1 -16 7979 7888 2258 109 7 0 chr9 36234782 36235085 -106036359 - AluSc SINE Alu -4 305 1 297 126 97 97 chr9 36235085 36235098 -106036346 - L1MD3 LINE L1 -106 7889 7877 317 250 50 0 chr9 36235098 36235178 -106036266 - MER58 DNA MER1_type -1 2419 131 857 92 59 0 chr9 36235189 36235308 -106036136 - AluSq/x SINE Alu -186 126 1 1329 87 6 27 chr9 36235433 36235616 -106035828 - AluSp SINE Alu -12 301 123 948 52 9 0 chr9 36235625 36235740 -106035704 - AluSc SINE Alu -18 291 176 1197 208 210 24 chr9 36235768 36235837 -106035607 + L1 LINE L1 3822 3877 -2269 1656 128 17 37 chr9 36235837 36236134 -106035310 + AluY SINE Alu 10 300 -11 1197 208 210 24 chr9 36236134 36236270 -106035174 + L1 LINE L1 3877 3986 -2160 1640 172 38 14 chr9 36236270 36236560 -106034884 - AluJb SINE Alu -15 297 1 1197 208 210 24 chr9 36236560 36236793 -106034651 + L1 LINE L1 3986 4350 -1796 320 321 73 68 chr9 36236956 36237079 -106034365 - HAL1b LINE L1 -749 599 478 1548 190 20 27 chr9 36237079 36237374 -106034070 - AluJo SINE Alu -19 293 1 320 321 73 68 chr9 36237374 36237509 -106033935 - HAL1b LINE L1 -870 478 345 2342 99 3 10 chr9 36237509 36237823 -106033621 - AluSx SINE Alu 0 312 1 320 321 73 68 chr9 36237823 36238121 -106033323 - HAL1b LINE L1 -1003 345 39 1438 108 66 150 chr9 36238313 36238486 -106032958 - AluSx SINE Alu -6 306 173 2277 115 0 0 chr9 36238486 36238791 -106032653 - AluSx SINE Alu -7 305 1 1438 108 66 150 chr9 36238791 36238951 -106032493 - AluSx SINE Alu -139 173 1 2266 96 0 19 chr9 36238962 36239275 -106032169 - AluY SINE Alu -4 307 1 770 151 0 50 chr9 36239277 36239416 -106032028 - AluJo/FLAM SINE Alu -170 132 1 1423 117 5 10 chr9 36239447 36239652 -106031792 - AluSx SINE Alu -108 204 1 783 211 119 23 chr9 36239991 36240209 -106031235 + MIR SINE MIR 1 239 -23 727 179 0 22 chr9 36240973 36241107 -106030337 + FLAM_C SINE Alu 3 133 0 2201 111 0 10 chr9 36241852 36242149 -106029295 - AluSx SINE Alu -18 294 1 2069 83 62 0 chr9 36242494 36242770 -106028674 - AluSp SINE Alu -16 297 5 2258 103 3 0 chr9 36242786 36243087 -106028357 - AluY SINE Alu -9 302 1 2253 90 17 3 chr9 36243607 36243906 -106027538 - AluSc SINE Alu -6 303 1 2146 125 10 10 chr9 36244113 36244417 -106027027 + AluSx SINE Alu 1 304 -8 566 184 18 9 chr9 36244417 36244526 -106026918 - FLAM_A SINE Alu -32 110 1 2099 135 0 0 chr9 36244585 36244888 -106026556 - AluSq SINE Alu -10 303 1 2250 120 0 0 chr9 36244917 36245218 -106026226 + AluSx SINE Alu 1 301 -11 2195 75 0 11 chr9 36245910 36246191 -106025253 + AluY SINE Alu 22 299 -12 1312 145 5 5 chr9 36246226 36246433 -106025011 + AluSx SINE Alu 1 207 -105 250 180 0 33 chr9 36246653 36246714 -106024730 - FAM SINE Alu 0 179 121 494 293 41 26 chr9 36247107 36247377 -106024067 - AluSx SINE Alu -22 290 17 252 0 0 0 chr9 36247591 36247619 -106023825 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 670 164 57 0 chr9 36247797 36247919 -106023525 + FLAM_A SINE Alu 10 138 -4 1904 149 20 3 chr9 36248141 36248436 -106023008 + AluJb SINE Alu 1 300 -12 204 40 0 0 chr9 36248497 36248522 -106022922 + (CGG)n Simple_repeat Simple_repeat 3 27 0 198 0 0 0 chr9 36252834 36252856 -106018588 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 267 267 13 0 chr9 36254124 36254199 -106017245 + MIR SINE MIR 79 154 -108 254 284 68 14 chr9 36254752 36254826 -106016618 - Charlie8 DNA MER1_type -2190 227 150 2286 90 10 7 chr9 36254829 36255130 -106016314 + AluSx SINE Alu 2 303 -9 2332 102 0 13 chr9 36255632 36255946 -106015498 - AluSg SINE Alu 0 310 1 2108 198 78 36 chr9 36256070 36256428 -106015016 - MER90 LTR ERV1 0 575 233 2211 112 0 0 chr9 36256428 36256737 -106014707 - AluSx SINE Alu 0 309 1 2108 198 78 36 chr9 36256737 36256912 -106014532 - MER90 LTR ERV1 -342 233 15 2260 114 3 0 chr9 36256912 36257220 -106014224 - AluSx SINE Alu -3 309 1 2108 198 78 36 chr9 36257220 36257236 -106014208 - MER90 LTR ERV1 -560 15 1 696 208 8 0 chr9 36257249 36257374 -106014070 - AluJo/FRAM SINE Alu -50 262 137 1670 89 5 5 chr9 36257375 36257599 -106013845 - AluSq SINE Alu 0 313 90 1799 178 3 16 chr9 36257603 36257906 -106013538 + AluJb SINE Alu 1 299 -13 250 182 45 15 chr9 36257935 36258001 -106013443 + L1ME LINE L1 5592 5659 -462 2110 126 0 3 chr9 36258616 36258927 -106012517 - AluSx SINE Alu 0 310 1 2052 130 0 32 chr9 36259175 36259490 -106011954 + AluSx SINE Alu 1 305 -7 2417 86 3 0 chr9 36259671 36259975 -106011469 - AluSp SINE Alu -7 306 2 1310 70 0 0 chr9 36260159 36260317 -106011127 + AluY SINE Alu 1 158 -153 2062 113 11 0 chr9 36260625 36260909 -106010535 - AluSx SINE Alu -25 287 1 26 0 0 0 chr9 36260911 36260937 -106010507 + AT_rich Low_complexity Low_complexity 1 26 0 1887 141 21 14 chr9 36260937 36261220 -106010224 - AluSx SINE Alu -27 285 1 263 27 0 27 chr9 36261222 36261259 -106010185 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 1926 90 60 0 chr9 36261259 36261527 -106009917 - AluSx SINE Alu -28 284 1 335 338 15 0 chr9 36261586 36261722 -106009722 + L1ME LINE L1 5680 5817 -304 567 205 8 31 chr9 36261737 36261864 -106009580 + FLAM_C SINE Alu 6 129 -14 2420 53 0 30 chr9 36261999 36262299 -106009145 - AluSc SINE Alu -18 291 1 962 206 0 0 chr9 36262612 36262796 -106008648 - FRAM SINE Alu 0 176 1 1046 101 0 0 chr9 36263190 36263328 -106008116 - AluSq/x SINE Alu -174 138 1 951 100 87 0 chr9 36263329 36263479 -106007965 - L1MA6 LINE L1 -351 5949 5787 2284 75 0 3 chr9 36263489 36263782 -106007662 - AluY SINE Alu -19 292 1 314 150 12 124 chr9 36263782 36263819 -106007625 + MSTB LTR MaLR 361 380 -46 1248 56 56 0 chr9 36263819 36263980 -106007464 - L1PA11 LINE L1 0 6174 6005 314 150 12 124 chr9 36263980 36264023 -106007421 + MSTB LTR MaLR 380 426 0 1140 139 0 0 chr9 36264109 36264281 -106007163 + AluJb SINE Alu 134 305 -7 3209 308 80 38 chr9 36264380 36264638 -106006806 + HERV16 LTR ERVL 827 1073 -3923 1820 112 16 70 chr9 36264638 36264759 -106006685 + AluSx SINE Alu 11 137 -175 2302 84 0 10 chr9 36264759 36265070 -106006374 + AluY SINE Alu 1 308 -3 1820 112 16 70 chr9 36265070 36265087 -106006357 + AluSx SINE Alu 137 153 -159 1902 142 0 19 chr9 36265087 36265405 -106006039 + AluSp SINE Alu 1 312 -1 1820 112 16 70 chr9 36265405 36265577 -106005867 + AluSx SINE Alu 153 305 -7 2184 103 17 0 chr9 36265579 36265880 -106005564 + AluSq SINE Alu 1 306 -7 3209 308 80 38 chr9 36265880 36266037 -106005407 + HERV16 LTR ERVL 1073 1222 -3774 1646 177 0 17 chr9 36266037 36266336 -106005108 + AluJb SINE Alu 1 294 -18 3209 308 80 38 chr9 36266336 36266979 -106004465 + HERV16 LTR ERVL 1222 1836 -3160 2007 110 0 7 chr9 36266979 36267306 -106004138 + AluSc SINE Alu 1 325 0 3209 308 80 38 chr9 36267306 36267600 -106003844 + HERV16 LTR ERVL 1836 2116 -2880 2016 63 0 22 chr9 36267600 36267871 -106003573 + AluY SINE Alu 44 308 -3 3209 308 80 38 chr9 36267871 36268207 -106003237 + HERV16 LTR ERVL 2116 2678 -2318 948 123 53 47 chr9 36268213 36268384 -106003060 + AluJb SINE Alu 12 183 -129 754 193 113 0 chr9 36268559 36268709 -106002735 + AluSg/x SINE Alu 135 301 -11 2037 117 0 3 chr9 36268713 36269003 -106002441 + AluSq SINE Alu 1 289 -24 2221 89 3 0 chr9 36269156 36269448 -106001996 - AluSp SINE Alu -20 293 1 2140 110 7 0 chr9 36269452 36269751 -106001693 - AluSx SINE Alu -11 301 1 1995 115 0 30 chr9 36269908 36270213 -106001231 - AluSx SINE Alu -16 296 1 377 248 51 64 chr9 36270664 36270782 -106000662 - L2 LINE L2 -181 3091 2974 2217 114 0 0 chr9 36270782 36271090 -106000354 + AluSg SINE Alu 1 308 -2 377 248 51 64 chr9 36271090 36271128 -106000316 - L2 LINE L2 -298 2974 2937 575 131 0 0 chr9 36271254 36271366 -106000078 - AluJ SINE Alu 0 310 199 432 239 11 0 chr9 36271365 36271453 -105999991 - AluJ SINE Alu -193 119 31 * 246 313 222 16 chr9 36271461 36271889 -105999555 - L2 LINE L2 -508 2806 2291 319 264 109 36 chr9 36271973 36272083 -105999361 - L1MCa LINE L1 -4311 2115 1998 300 239 54 33 chr9 36273062 36273110 -105998334 - L1MC4 LINE L1 -1339 6703 6658 348 205 94 77 chr9 36273110 36273227 -105998217 - FLAM_A SINE Alu -11 122 4 300 239 54 33 chr9 36273227 36273253 -105998191 - L1MC4 LINE L1 -1384 6658 6634 1893 109 20 26 chr9 36273253 36273557 -105997887 - AluSx SINE Alu -10 302 1 300 239 54 33 chr9 36273557 36273573 -105997871 - L1MC4 LINE L1 -1408 6634 6610 292 279 43 57 chr9 36273682 36273822 -105997622 + L2 LINE L2 3175 3312 -1 196 234 43 106 chr9 36273912 36274006 -105997438 - L2 LINE L2 -338 2975 2888 1060 238 75 72 chr9 36274951 36275312 -105996132 - L2 LINE L2 0 3313 2952 842 180 0 2 chr9 36275724 36275953 -105995491 + AluJb SINE Alu 1 279 -33 237 248 178 10 chr9 36275963 36276019 -105995425 - L1ME4a LINE L1 -1 6120 6075 2071 110 7 3 chr9 36276019 36276312 -105995132 + AluSg SINE Alu 1 295 -10 191 35 0 35 chr9 36276312 36276341 -105995103 + (TAGA)n Simple_repeat Simple_repeat 3 30 0 237 248 178 10 chr9 36276346 36276390 -105995054 - L1ME4a LINE L1 -46 6075 6003 961 173 0 17 chr9 36276390 36276569 -105994875 - FRAM SINE Alu -2 174 1 928 164 0 12 chr9 36276624 36276789 -105994655 - FRAM SINE Alu -13 163 1 1893 103 4 0 chr9 36276799 36277060 -105994384 - AluSx SINE Alu -15 297 36 2048 122 0 7 chr9 36277129 36277433 -105994011 - AluSx SINE Alu -10 302 1 205 325 138 42 chr9 36277490 36277730 -105993714 + L2 LINE L2 2677 2939 -375 2009 106 44 0 chr9 36277787 36278080 -105993364 - AluSx SINE Alu -6 306 1 1549 149 52 4 chr9 36278199 36278495 -105992949 - AluJo SINE Alu 0 309 1 1973 115 13 0 chr9 36278633 36278937 -105992507 - AluSg SINE Alu -2 308 1 1664 142 0 57 chr9 36278942 36279273 -105992171 - AluJb SINE Alu 0 312 1 1958 106 40 10 chr9 36279385 36279686 -105991758 - AluSg SINE Alu 0 310 1 1057 170 53 6 chr9 36279769 36280016 -105991428 - AluJb SINE Alu -15 297 1 1740 145 3 3 chr9 36280038 36280320 -105991124 - AluJb SINE Alu -16 296 15 2081 116 3 16 chr9 36280375 36280686 -105990758 + AluSp SINE Alu 1 307 -6 1571 179 19 32 chr9 36280694 36281002 -105990442 + AluJo SINE Alu 1 304 -8 1456 182 0 30 chr9 36281130 36281266 -105990178 + AluJo SINE Alu 3 142 -170 1535 195 0 16 chr9 36281266 36281569 -105989875 + AluJb SINE Alu 1 298 -14 2418 63 0 0 chr9 36281569 36281867 -105989577 + AluY SINE Alu 1 299 -12 1456 182 0 30 chr9 36281867 36282026 -105989418 + AluJo SINE Alu 140 290 -22 2202 106 0 10 chr9 36282174 36282486 -105988958 + AluSg SINE Alu 1 309 -1 2090 103 17 0 chr9 36282539 36282831 -105988613 + AluSx SINE Alu 6 302 -10 1209 99 0 0 chr9 36282831 36282993 -105988451 + AluSg/x SINE Alu 134 295 -17 1947 136 3 7 chr9 36282996 36283305 -105988139 + AluSx SINE Alu 1 308 -4 1933 135 3 7 chr9 36284111 36284415 -105987029 - AluSx SINE Alu -9 303 1 1852 128 27 14 chr9 36284512 36284809 -105986635 + AluSg SINE Alu 3 303 -7 1197 149 0 28 chr9 36285453 36285667 -105985777 - AluSg/x SINE Alu -21 291 84 1505 178 14 4 chr9 36285692 36285837 -105985607 - AluJo SINE Alu -33 279 128 194 0 39 0 chr9 36285837 36285863 -105985581 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1505 178 14 4 chr9 36285863 36285993 -105985451 - AluJo SINE Alu -184 128 1 1428 155 40 40 chr9 36286340 36286382 -105985062 + MER46B DNA MER2_type 1 42 -2689 1807 160 0 26 chr9 36286382 36286694 -105984750 + AluJb SINE Alu 5 308 -4 2264 80 0 0 chr9 36286694 36286983 -105984461 + AluSc SINE Alu 1 289 -20 1428 155 40 40 chr9 36286983 36287235 -105984209 + MER46B DNA MER2_type 40 171 -65 2247 86 0 0 chr9 36287237 36287527 -105983917 + AluY SINE Alu 1 290 -21 1868 119 27 14 chr9 36287698 36287991 -105983453 + AluSg SINE Alu 7 303 -7 1203 150 0 24 chr9 36288635 36288848 -105982596 - AluSg/x SINE Alu -21 291 84 1505 178 14 4 chr9 36288873 36289018 -105982426 - AluJo SINE Alu -33 279 128 194 0 39 0 chr9 36289018 36289044 -105982400 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1505 178 14 4 chr9 36289044 36289174 -105982270 - AluJo SINE Alu -184 128 1 1782 164 0 26 chr9 36289563 36289875 -105981569 + AluJb SINE Alu 5 308 -4 1743 98 4 0 chr9 36289875 36290110 -105981334 + AluSq SINE Alu 1 236 -77 880 131 6 120 chr9 36290110 36290189 -105981255 - AluSx SINE Alu -150 162 114 1572 105 9 0 chr9 36290189 36290417 -105981027 - AluSq SINE Alu -14 299 70 880 131 6 120 chr9 36290417 36290520 -105980924 - AluSx SINE Alu -198 114 1 2078 112 3 13 chr9 36290524 36290838 -105980606 - AluY SINE Alu 0 311 1 1390 151 6 70 chr9 36290843 36291008 -105980436 - AluJb SINE Alu -20 292 118 183 42 0 0 chr9 36291008 36291032 -105980412 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2269 49 0 14 chr9 36291032 36291319 -105980125 - AluY SINE Alu -28 283 1 1390 151 6 70 chr9 36291319 36291464 -105979980 - AluJb SINE Alu -192 120 1 2163 103 3 0 chr9 36291474 36291775 -105979669 - AluSg SINE Alu -8 302 1 867 147 0 22 chr9 36291793 36291929 -105979515 - FLAM_C SINE Alu 0 133 1 2054 104 13 7 chr9 36291939 36292237 -105979207 - AluSq SINE Alu -13 300 1 467 202 55 9 chr9 36292238 36292347 -105979097 - L1M4 LINE L1 -491 5693 5580 813 218 31 35 chr9 36292350 36292579 -105978865 - AluJo SINE Alu -13 299 72 241 157 235 0 chr9 36292579 36292630 -105978814 - Charlie3 DNA MER1_type -2641 69 7 2194 106 0 10 chr9 36292803 36293115 -105978329 + AluSg SINE Alu 1 309 -1 2090 103 17 0 chr9 36293168 36293460 -105977984 + AluSx SINE Alu 6 302 -10 1209 99 0 0 chr9 36293460 36293622 -105977822 + AluSg/x SINE Alu 132 293 -17 1947 136 3 7 chr9 36293625 36293934 -105977510 + AluSx SINE Alu 1 308 -4 1933 135 3 7 chr9 36294740 36295044 -105976400 - AluSx SINE Alu -9 303 1 277 276 58 45 chr9 36295314 36295379 -105976065 - L1ME LINE L1 -457 5664 5601 1940 137 0 7 chr9 36295379 36295679 -105975765 + AluSx SINE Alu 1 298 -14 277 276 58 45 chr9 36295679 36295769 -105975675 - L1ME LINE L1 -520 5601 5507 2383 60 3 0 chr9 36296817 36297117 -105974327 + AluY SINE Alu 2 302 -9 489 130 0 0 chr9 36297385 36297454 -105973990 - AluJ/FLAM SINE Alu -243 69 1 635 299 68 40 chr9 36298004 36298329 -105973115 - L2 LINE L2 -2 3311 2978 1407 162 26 55 chr9 36298691 36298875 -105972569 - AluJb SINE Alu -13 299 126 1888 157 0 3 chr9 36298875 36299188 -105972256 - AluSx SINE Alu 0 312 1 1407 162 26 55 chr9 36299188 36299311 -105972133 - AluJb SINE Alu -186 126 1 491 164 8 90 chr9 36299822 36299944 -105971500 - Tigger1 DNA MER2_type -143 2275 2164 529 163 22 0 chr9 36299946 36300038 -105971406 - L1MA4A LINE L1 -153 6150 6057 1298 168 0 9 chr9 36300039 36300271 -105971173 + AluSg/x SINE Alu 76 305 -5 1718 159 4 0 chr9 36300300 36300577 -105970867 - AluSx SINE Alu -34 278 1 2727 159 25 50 chr9 36300577 36300941 -105970503 - L1MA4A LINE L1 -230 6073 5728 1083 126 0 16 chr9 36300941 36301122 -105970322 + L1MA4A LINE L1 6124 6302 -1 2727 159 25 50 chr9 36301122 36301355 -105970089 - L1MA4A LINE L1 -575 5728 5491 589 200 0 0 chr9 36301374 36301469 -105969975 - FRAM SINE Alu -62 114 20 1075 133 45 27 chr9 36301469 36301623 -105969821 - L1MA4A LINE L1 -746 5400 5331 1513 163 6 54 chr9 36301623 36301936 -105969508 - AluJo SINE Alu -14 298 1 1075 133 45 27 chr9 36301936 36302050 -105969394 - L1MA4A LINE L1 -815 5331 5221 1782 147 28 0 chr9 36302113 36302398 -105969046 + AluSx SINE Alu 1 293 -19 2048 111 13 7 chr9 36303139 36303446 -105967998 + AluSg SINE Alu 1 309 -1 713 137 0 14 chr9 36304435 36304581 -105966863 + (TTCC)n Simple_repeat Simple_repeat 3 146 0 243 239 0 0 chr9 36304589 36304635 -105966809 - Alu SINE Alu -200 102 57 1262 220 8 0 chr9 36304663 36304918 -105966526 + AluJb SINE Alu 1 257 -55 214 115 39 0 chr9 36305000 36305052 -105966392 + (TA)n Simple_repeat Simple_repeat 2 55 0 324 212 40 81 chr9 36305056 36305155 -105966289 + L1MC4 LINE L1 6613 6707 -1335 * 388 248 12 85 chr9 36305081 36305272 -105966172 - L1MC4 LINE L1 -1323 6719 6593 1586 178 31 0 chr9 36305351 36305643 -105965801 - AluJb SINE Alu -11 301 1 2431 48 3 19 chr9 36305777 36306092 -105965352 + AluY SINE Alu 2 311 0 1352 91 0 25 chr9 36306224 36306423 -105965021 - AluSg/x SINE Alu -18 292 99 2009 79 50 4 chr9 36306434 36306712 -105964732 - AluSc SINE Alu -18 291 1 1486 97 5 5 chr9 36306717 36306933 -105964511 - AluSp SINE Alu -11 302 87 1327 213 11 11 chr9 36307063 36307349 -105964095 - AluJo SINE Alu -18 294 9 1982 107 0 28 chr9 36307509 36307822 -105963622 - AluY SINE Alu 0 305 1 751 143 0 45 chr9 36307927 36308060 -105963384 - FLAM_C SINE Alu -5 128 2 896 150 0 14 chr9 36308274 36308421 -105963023 - AluSg/x SINE Alu -8 304 160 1412 138 5 13 chr9 36308421 36308645 -105962799 + AluSc SINE Alu 72 293 -16 25 0 0 0 chr9 36308946 36308971 -105962473 + AT_rich Low_complexity Low_complexity 1 25 0 2066 84 0 0 chr9 36308975 36309248 -105962196 + AluSg SINE Alu 1 273 -37 325 86 35 0 chr9 36309356 36309414 -105962030 + GA-rich Low_complexity Low_complexity 1 60 0 335 228 88 35 chr9 36309416 36309530 -105961914 + L1MC4a LINE L1 5974 6093 -1715 236 149 21 0 chr9 36309541 36309588 -105961856 + GA-rich Low_complexity Low_complexity 2 49 0 1441 185 7 30 chr9 36309975 36310277 -105961167 + AluJb SINE Alu 1 295 -17 502 143 114 32 chr9 36310293 36310459 -105960985 + Tigger1 DNA MER2_type 2182 2418 0 2119 109 0 0 chr9 36311512 36311814 -105959630 + AluSc SINE Alu 1 302 -7 1819 158 10 7 chr9 36311927 36312237 -105959207 + AluJb SINE Alu 1 311 -1 2247 185 109 4 chr9 36312292 36312817 -105958627 + L1MB7 LINE L1 5502 6081 -103 878 130 0 23 chr9 36313265 36313396 -105958048 + AluJo SINE Alu 1 128 -174 917 175 0 41 chr9 36314464 36314635 -105956809 + AluJo SINE Alu 137 300 -12 2170 90 20 7 chr9 36314697 36314997 -105956447 + AluY SINE Alu 1 304 -7 189 0 0 0 chr9 36315136 36315157 -105956287 + (CAGA)n Simple_repeat Simple_repeat 2 22 0 576 336 32 7 chr9 36315219 36315496 -105955948 - L1MC4a LINE L1 -1961 5847 5564 241 138 0 138 chr9 36316001 36316066 -105955378 - MER58 DNA MER1_type 0 2420 2365 603 128 59 0 chr9 36316067 36316169 -105955275 - FLAM_C SINE Alu -35 108 1 1327 183 27 84 chr9 36316338 36316672 -105954772 + MER68 LTR ERV1 1 315 -247 1721 171 3 13 chr9 36317020 36317324 -105954120 + AluJb SINE Alu 1 301 -11 535 263 8 8 chr9 36317346 36317479 -105953965 + FLAM_C SINE Alu 1 133 0 2190 86 0 56 chr9 36318348 36318694 -105952750 + AluY SINE Alu 1 311 0 2140 99 3 3 chr9 36318901 36319183 -105952261 + AluSx SINE Alu 1 282 -30 2433 58 13 26 chr9 36319539 36319851 -105951593 - AluY SINE Alu -3 308 1 230 233 0 0 chr9 36320369 36320412 -105951032 + (CA)n Simple_repeat Simple_repeat 2 44 0 882 149 134 89 chr9 36320524 36320793 -105950651 - AluJo SINE Alu -26 286 6 2439 97 6 0 chr9 36320816 36321127 -105950317 - AluSq SINE Alu 0 313 1 1750 156 30 27 chr9 36322348 36322649 -105948795 - AluJo SINE Alu -10 302 1 2147 135 0 0 chr9 36323390 36323687 -105947757 - AluSx SINE Alu -15 297 1 288 0 0 0 chr9 36323750 36323782 -105947662 + (CA)n Simple_repeat Simple_repeat 2 33 0 2478 75 0 3 chr9 36324719 36325026 -105946418 + AluSg SINE Alu 1 306 -4 2322 92 10 3 chr9 36325027 36325332 -105946112 + AluSp SINE Alu 1 307 -6 1872 158 0 32 chr9 36325798 36326109 -105945335 - AluSx SINE Alu -11 301 1 1407 180 107 0 chr9 36326316 36326588 -105944856 + AluJo SINE Alu 1 301 -11 26 0 0 0 chr9 36326706 36326732 -105944712 + AT_rich Low_complexity Low_complexity 1 26 0 662 273 19 42 chr9 36326743 36327053 -105944391 - L1ME1 LINE L1 -22 6140 5838 1588 188 3 29 chr9 36327434 36327742 -105943702 - AluJb SINE Alu -12 300 1 2107 121 14 0 chr9 36327898 36328187 -105943257 - AluSq SINE Alu -20 293 1 21 0 0 0 chr9 36328187 36328208 -105943236 + AT_rich Low_complexity Low_complexity 1 21 0 578 196 8 53 chr9 36328214 36328347 -105943097 + FLAM_A SINE Alu 1 127 -6 2111 110 7 20 chr9 36328347 36328646 -105942798 + AluSx SINE Alu 1 295 -17 1321 196 58 31 chr9 36329419 36329710 -105941734 - AluJo SINE Alu -13 299 1 2150 128 3 16 chr9 36329974 36330280 -105941164 + AluSq SINE Alu 1 302 -11 22 56 0 0 chr9 36331690 36331726 -105939718 + AT_rich Low_complexity Low_complexity 1 36 0 2258 93 7 0 chr9 36331846 36332174 -105939270 + AluSg SINE Alu 1 330 0 2145 122 0 7 chr9 36332175 36332478 -105938966 + AluSq SINE Alu 1 301 -12 21 0 0 0 chr9 36332478 36332499 -105938945 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr9 36333171 36333196 -105938248 + AT_rich Low_complexity Low_complexity 1 25 0 986 185 0 6 chr9 36334034 36334207 -105937237 + FAM SINE Alu 1 172 -3 734 249 131 19 chr9 36334233 36334611 -105936833 - L1ME1 LINE L1 -622 5544 5272 579 160 28 9 chr9 36334629 36334735 -105936709 - L1MB4 LINE L1 -25 6155 6048 856 242 82 40 chr9 36334757 36335247 -105936197 - L1M4 LINE L1 -817 5329 4861 2243 94 0 7 chr9 36335247 36335544 -105935900 + AluY SINE Alu 1 295 -16 856 242 82 40 chr9 36335544 36335646 -105935798 - L1M4 LINE L1 -1285 4861 4765 1957 146 9 35 chr9 36335646 36335962 -105935482 + AluSx SINE Alu 1 308 -4 856 242 82 40 chr9 36335962 36336270 -105935174 - L1M4 LINE L1 -1381 4765 4317 957 259 163 14 chr9 36336483 36336973 -105934471 - L1ME1 LINE L1 -1616 4530 3968 282 136 198 12 chr9 36338060 36338141 -105933303 - L1ME1 LINE L1 -2190 3956 3861 1998 181 43 89 chr9 36338166 36338725 -105932719 - L1MB7 LINE L1 -25 6159 5627 1258 223 39 29 chr9 36338753 36339062 -105932382 + AluJo SINE Alu 1 312 0 1910 130 25 7 chr9 36339069 36339345 -105932099 + AluSx SINE Alu 5 285 -27 1605 151 4 20 chr9 36339399 36339651 -105931793 - AluJb SINE Alu -1 311 64 236 326 39 6 chr9 36339656 36339837 -105931607 - L1ME1 LINE L1 -2798 3348 3162 1542 188 14 14 chr9 36339918 36340211 -105931233 - AluJb SINE Alu -19 293 1 2402 88 3 3 chr9 36340276 36340583 -105930861 - AluSx SINE Alu -5 307 1 544 247 45 39 chr9 36342303 36342481 -105928963 + MER20 DNA MER1_type 41 219 0 1493 183 23 109 chr9 36343238 36343405 -105928039 + L1MB8 LINE L1 5004 5184 -999 1363 189 60 0 chr9 36343405 36343686 -105927758 + AluJo SINE Alu 1 298 -14 1493 183 23 109 chr9 36343686 36343706 -105927738 + L1MB8 LINE L1 5184 5204 -979 1726 198 3 0 chr9 36343706 36344004 -105927440 + AluJb SINE Alu 1 299 -13 1493 183 23 109 chr9 36344004 36344150 -105927294 + L1MB8 LINE L1 5204 5361 -822 1725 133 78 0 chr9 36344150 36344420 -105927024 + AluSx SINE Alu 1 291 -21 1493 183 23 109 chr9 36344420 36344630 -105926814 + L1MB8 LINE L1 5361 5587 -596 2379 92 0 7 chr9 36344630 36344936 -105926508 + AluSg SINE Alu 1 304 -6 1493 183 23 109 chr9 36344936 36344997 -105926447 + L1MB8 LINE L1 5587 5552 -631 2332 74 13 26 chr9 36344997 36345306 -105926138 + AluY SINE Alu 1 305 -6 1493 183 23 109 chr9 36345306 36345396 -105926048 + L1MB8 LINE L1 5551 5647 -536 880 135 0 0 chr9 36345414 36345540 -105925904 + FLAM_C SINE Alu 1 126 -17 560 174 9 0 chr9 36345736 36345851 -105925593 + L1MB8 LINE L1 5760 5875 -309 1349 142 51 34 chr9 36345875 36346171 -105925273 + L1MB8 LINE L1 5853 6153 -25 1980 132 0 48 chr9 36346195 36346506 -105924938 + AluSx SINE Alu 1 296 -16 1585 158 21 0 chr9 36346835 36347076 -105924368 - AluJb SINE Alu -62 250 5 1502 179 60 8 chr9 36347139 36347407 -105924037 - AluJo SINE Alu -30 282 1 970 181 0 0 chr9 36347459 36347614 -105923830 + AluSq SINE Alu 1 155 -158 425 141 70 0 chr9 36347615 36347686 -105923758 + AluSg/x SINE Alu 194 269 -43 2268 99 14 0 chr9 36348148 36348440 -105923004 - AluSx SINE Alu -16 296 1 2165 90 41 10 chr9 36348748 36349038 -105922406 - AluSq SINE Alu -14 299 1 527 118 13 0 chr9 36349060 36349136 -105922308 - AluSp SINE Alu -109 204 128 548 176 0 0 chr9 36349143 36349245 -105922199 + AluJb SINE Alu 210 311 -1 1621 151 53 28 chr9 36349286 36349570 -105921874 + AluJo SINE Alu 1 291 -21 2029 130 25 0 chr9 36350073 36350358 -105921086 + AluSx SINE Alu 1 292 -20 1642 161 31 35 chr9 36350360 36350612 -105920832 + MER46B DNA MER2_type 43 170 -2561 2588 60 0 0 chr9 36350612 36350910 -105920534 + AluY SINE Alu 1 298 -13 1642 161 31 35 chr9 36350910 36350974 -105920470 + MER46B DNA MER2_type 170 233 -3 2237 121 0 3 chr9 36351013 36351319 -105920125 - AluSx SINE Alu -7 305 1 2363 78 3 14 chr9 36352293 36352588 -105918856 + AluSp SINE Alu 1 292 -21 2420 100 0 0 chr9 36352727 36353036 -105918408 - AluSc SINE Alu 0 309 1 525 227 97 0 chr9 36353120 36353293 -105918151 + L1MA10 LINE L1 5987 6334 0 231 237 13 40 chr9 36353507 36353583 -105917861 - MIR SINE MIR -85 123 50 1573 147 34 59 chr9 36353770 36354090 -105917354 - AluJb SINE Alu 0 312 1 2175 127 3 3 chr9 36354091 36354398 -105917046 - AluSx SINE Alu -5 307 1 2078 103 41 10 chr9 36354484 36354774 -105916670 + AluSq SINE Alu 1 299 -14 2268 99 14 0 chr9 36355082 36355374 -105916070 + AluSx SINE Alu 1 296 -16 2061 126 10 13 chr9 36356309 36356610 -105914834 - AluJo SINE Alu -8 304 5 252 244 0 12 chr9 36357500 36357582 -105913862 + (TG)n Simple_repeat Simple_repeat 2 82 0 21 0 0 0 chr9 36358628 36358649 -105912795 + AT_rich Low_complexity Low_complexity 1 21 0 2272 97 3 0 chr9 36359885 36360175 -105911269 + AluSx SINE Alu 1 291 -21 1580 125 17 0 chr9 36360257 36360489 -105910955 - MER72 LTR ERV1 -27 695 460 2263 103 0 3 chr9 36361576 36361867 -105909577 + AluSc SINE Alu 1 290 -19 1799 171 27 0 chr9 36361995 36362294 -105909150 + AluJo SINE Alu 1 307 -5 1543 149 129 0 chr9 36362296 36362551 -105908893 + AluJo SINE Alu 1 288 -14 2243 109 0 3 chr9 36362559 36362852 -105908592 + AluSx SINE Alu 1 292 -20 285 184 149 135 chr9 36362852 36362967 -105908477 + MLT1C LTR MaLR 335 454 -51 2309 106 0 3 chr9 36362967 36363268 -105908176 + AluSx SINE Alu 1 300 -12 285 184 149 135 chr9 36363268 36363293 -105908151 + MLT1C LTR MaLR 454 477 -28 2068 115 38 0 chr9 36363522 36363810 -105907634 - AluSq SINE Alu -14 299 1 2004 156 0 13 chr9 36363811 36364118 -105907326 - AluSx SINE Alu -9 303 1 187 118 0 0 chr9 36364122 36364156 -105907288 + (TTTG)n Simple_repeat Simple_repeat 2 132 0 1726 125 3 83 chr9 36364156 36364319 -105907125 - AluSx SINE Alu -1 321 147 2154 109 3 10 chr9 36364319 36364498 -105906946 - AluSg SINE Alu 0 310 132 2356 83 3 0 chr9 36364498 36364800 -105906644 - AluSp SINE Alu -10 303 1 2154 109 3 10 chr9 36364800 36364932 -105906512 - AluSg SINE Alu -178 132 1 1979 111 7 7 chr9 36364933 36365230 -105906214 - AluSc SINE Alu -12 297 1 1726 125 3 83 chr9 36365230 36365377 -105906067 - AluSx SINE Alu -174 148 1 729 146 23 15 chr9 36365380 36365510 -105905934 - FLAM_C SINE Alu -2 131 1 1879 128 7 7 chr9 36365511 36365808 -105905636 - AluSc SINE Alu -12 297 1 249 175 0 0 chr9 36366204 36366244 -105905200 - AluSq SINE Alu -11 291 252 194 0 39 0 chr9 36366264 36366290 -105905154 + (TTTG)n Simple_repeat Simple_repeat 4 30 0 1852 92 0 37 chr9 36366291 36366562 -105904882 - AluSq SINE Alu -52 261 1 41 30 0 15 chr9 36366570 36366609 -105904835 + AT_rich Low_complexity Low_complexity 1 40 -25 1746 109 36 56 chr9 36366609 36366719 -105904725 - AluSx SINE Alu -14 298 187 2402 57 0 7 chr9 36366719 36367020 -105904424 + AluY SINE Alu 1 299 -12 1746 109 36 56 chr9 36367020 36367213 -105904231 - AluSx SINE Alu -125 187 1 41 30 0 15 chr9 36367213 36367239 -105904205 + AT_rich Low_complexity Low_complexity 40 65 0 568 131 12 0 chr9 36367360 36367444 -105904000 + AluSq SINE Alu 142 226 -87 915 141 5 115 chr9 36367445 36367533 -105903911 - AluSx SINE Alu -141 171 114 1572 105 9 0 chr9 36367533 36367761 -105903683 - AluSq SINE Alu -14 299 70 915 141 5 115 chr9 36367761 36367864 -105903580 - AluSx SINE Alu -198 114 1 2078 112 3 13 chr9 36367868 36368182 -105903262 - AluY SINE Alu 0 311 1 1390 151 6 70 chr9 36368187 36368352 -105903092 - AluJb SINE Alu -20 292 118 183 42 0 0 chr9 36368352 36368376 -105903068 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2269 49 0 14 chr9 36368376 36368663 -105902781 - AluY SINE Alu -28 283 1 1390 151 6 70 chr9 36368663 36368808 -105902636 - AluJb SINE Alu -192 120 1 2281 93 0 3 chr9 36368818 36369120 -105902324 - AluSc SINE Alu -8 301 1 517 227 97 0 chr9 36369204 36369377 -105902067 + L1MA10 LINE L1 5987 6334 0 252 213 27 124 chr9 36369534 36369667 -105901777 - MIR SINE MIR -72 136 49 1456 147 34 59 chr9 36369854 36370174 -105901270 - AluJb SINE Alu 0 312 1 1500 134 3 45 chr9 36370175 36370489 -105900955 - AluSg SINE Alu -5 305 5 642 167 0 0 chr9 36370609 36370705 -105900739 + FRAM SINE Alu 55 150 -26 423 0 0 0 chr9 36370709 36370756 -105900688 + (TAGA)n Simple_repeat Simple_repeat 1 47 0 373 95 48 16 chr9 36370756 36370819 -105900625 - AluSg SINE Alu -193 107 43 791 125 0 17 chr9 36370838 36370958 -105900486 - FLAM_C SINE Alu -15 118 1 1129 328 61 43 chr9 36370970 36371166 -105900278 + HERVL LTR ERVL 2669 2860 -2904 2331 71 10 6 chr9 36371166 36371477 -105899967 - AluSx SINE Alu 0 312 1 1129 328 61 43 chr9 36371477 36371782 -105899662 + HERVL LTR ERVL 2860 3158 -2606 1645 198 50 33 chr9 36371782 36372141 -105899303 + MLT1A1 LTR MaLR 1 365 0 1129 328 61 43 chr9 36372141 36372267 -105899177 + HERVL LTR ERVL 3158 3280 -2484 2037 114 0 17 chr9 36372267 36372565 -105898879 + AluSx SINE Alu 1 293 -19 1129 328 61 43 chr9 36372565 36372657 -105898787 + HERVL LTR ERVL 3280 3369 -2395 2081 118 3 3 chr9 36372657 36372953 -105898491 + AluSx SINE Alu 1 296 -16 1129 328 61 43 chr9 36372953 36373168 -105898276 + HERVL LTR ERVL 3369 3667 -2097 596 331 43 37 chr9 36373218 36373476 -105897968 + HERVL LTR ERVL 3764 4028 -1736 1724 140 86 73 chr9 36373476 36373861 -105897583 - MLT1B LTR MaLR 0 390 1 596 331 43 37 chr9 36373861 36374064 -105897380 + HERVL LTR ERVL 4028 4228 -1536 1602 169 4 4 chr9 36374201 36374473 -105896971 - AluJo SINE Alu -30 282 11 237 273 129 0 chr9 36374533 36374665 -105896779 - L1P LINE L1 -758 5388 5240 714 316 38 14 chr9 36374809 36375179 -105896265 + L1MEc LINE L1 67 445 -5951 688 192 41 0 chr9 36375215 36375361 -105896083 - MER67A LTR ERV1 0 543 392 2239 92 0 3 chr9 36375398 36375703 -105895741 + AluSq SINE Alu 1 304 -9 2144 101 0 3 chr9 36375713 36376011 -105895433 + AluSg SINE Alu 2 298 -12 1864 128 47 0 chr9 36376013 36376310 -105895134 + AluSx SINE Alu 1 311 -1 2046 187 88 29 chr9 36376324 36376768 -105894676 - MER67B LTR ERV1 -140 521 52 775 115 0 33 chr9 36376782 36376904 -105894540 - AluSp/q SINE Alu 0 313 196 26 0 0 0 chr9 36377004 36377030 -105894414 + AT_rich Low_complexity Low_complexity 1 26 0 2068 109 0 3 chr9 36377033 36377327 -105894117 + AluY SINE Alu 1 293 -18 1326 163 17 57 chr9 36377327 36377627 -105893817 - AluJo SINE Alu -23 289 2 769 209 70 0 chr9 36377632 36377790 -105893654 - AluJo/FRAM SINE Alu -10 302 134 2420 53 0 3 chr9 36377790 36378089 -105893355 - AluY SINE Alu -13 298 1 518 274 99 48 chr9 36378120 36378347 -105893097 + LTR33A LTR ERVL 21 268 -255 1832 90 27 111 chr9 36378347 36378680 -105892764 - AluSx SINE Alu -7 305 1 518 274 99 48 chr9 36378680 36378744 -105892700 + LTR33A LTR ERVL 268 327 -196 355 225 13 49 chr9 36378785 36378886 -105892558 - L1MC4 LINE L1 -1339 6983 1995 329 263 63 11 chr9 36378874 36378969 -105892475 - L1MC4a LINE L1 -1846 5962 5863 * 396 260 0 0 chr9 36378973 36379061 -105892383 - L1MC4a LINE L1 -530 5591 5513 1401 171 6 76 chr9 36379062 36379224 -105892220 + AluJo SINE Alu 2 133 -179 1506 95 9 0 chr9 36379224 36379435 -105892009 - AluSg/x SINE Alu -11 301 89 1401 171 6 76 chr9 36379435 36379588 -105891856 + AluJo SINE Alu 133 295 -17 2117 69 69 14 chr9 36379588 36379876 -105891568 + AluSc SINE Alu 1 304 -5 307 309 20 53 chr9 36379877 36380029 -105891415 + L1MC4 LINE L1 7601 7747 -295 30 83 0 0 chr9 36380223 36380295 -105891149 + AT_rich Low_complexity Low_complexity 1 72 0 847 241 0 0 chr9 36380302 36380468 -105890976 + FAM SINE Alu 1 166 -9 515 272 112 24 chr9 36380843 36381012 -105890432 - MIR SINE MIR -59 203 20 2105 202 84 17 chr9 36381035 36381529 -105889915 - MER21B LTR ERV1 -1 862 366 1999 103 4 4 chr9 36381558 36381865 -105889579 - AluSc SINE Alu 0 307 1 1224 98 0 0 chr9 36381869 36382032 -105889412 - AluSq SINE Alu -17 296 134 1996 103 0 63 chr9 36382032 36382351 -105889093 - AluSx SINE Alu -13 299 1 659 272 123 5 chr9 36382354 36382549 -105888895 - MER21B LTR ERV1 -605 258 41 370 319 162 9 chr9 36382871 36383087 -105888357 - MIR SINE MIR 0 262 14 196 310 14 14 chr9 36383167 36383238 -105888206 + MIR3 SINE MIR 118 188 -20 2191 80 3 0 chr9 36383641 36383929 -105887515 + AluY SINE Alu 17 305 -6 189 74 0 0 chr9 36384065 36384092 -105887352 + (TTG)n Simple_repeat Simple_repeat 1 27 0 1883 119 0 11 chr9 36384092 36384370 -105887074 - AluSx SINE Alu -37 275 1 185 125 75 0 chr9 36384931 36384971 -105886473 + GA-rich Low_complexity Low_complexity 3 45 0 295 255 31 35 chr9 36384975 36385063 -105886381 + L1MC/D LINE L1 5473 5554 -653 1834 137 0 23 chr9 36385063 36385363 -105886081 - AluSx SINE Alu -19 293 1 295 255 31 35 chr9 36385363 36385402 -105886042 + L1MC/D LINE L1 5554 5592 -615 1903 122 3 46 chr9 36385435 36385739 -105885705 + AluSx SINE Alu 1 291 -21 1543 151 11 18 chr9 36385842 36386120 -105885324 + AluJo SINE Alu 5 280 -32 2369 77 0 10 chr9 36386160 36386473 -105884971 - AluY SINE Alu -1 310 1 704 278 65 6 chr9 36386648 36387039 -105884405 - MLT1K LTR MaLR 0 588 3 2177 102 0 7 chr9 36387304 36387609 -105883835 - AluSg SINE Alu -7 303 1 2504 48 0 13 chr9 36387621 36387934 -105883510 - AluY SINE Alu -2 309 1 1813 142 7 7 chr9 36388188 36388477 -105882967 + AluJo SINE Alu 16 304 -8 330 149 0 30 chr9 36388520 36388587 -105882857 - AluSc SINE Alu -1 298 234 322 141 42 0 chr9 36389143 36389214 -105882230 + GA-rich Low_complexity Low_complexity 2 75 0 1684 112 154 0 chr9 36389346 36389605 -105881839 - AluSg SINE Alu -1 299 1 628 241 0 7 chr9 36390235 36390372 -105881072 + AluSq/x SINE Alu 2 137 -175 1866 114 17 7 chr9 36390383 36390681 -105880763 + AluSq SINE Alu 12 312 -1 2315 84 0 0 chr9 36390707 36391005 -105880439 + AluSq SINE Alu 1 298 -15 565 216 161 55 chr9 36391007 36391299 -105880145 - MLT1J LTR MaLR -74 437 115 423 245 0 9 chr9 36391334 36391440 -105880004 + AluSq/x SINE Alu 2 106 -206 442 315 63 9 chr9 36391440 36391744 -105879700 - HERVL LTR ERVL -1127 4361 4039 6040 41 11 18 chr9 36391854 36392690 -105878754 + SVA Other Other 635 1386 0 487 222 0 26 chr9 36392701 36392818 -105878626 + AluJb SINE Alu 116 229 -83 194 62 31 0 chr9 36392961 36392993 -105878451 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 2007 109 3 3 chr9 36392995 36393278 -105878166 - AluSx SINE Alu -29 283 1 1793 157 3 7 chr9 36393352 36393651 -105877793 + AluJb SINE Alu 1 298 -14 198 0 0 0 chr9 36394057 36394079 -105877365 + (A)n Simple_repeat Simple_repeat 1 22 0 792 181 0 0 chr9 36394300 36394433 -105877011 + FLAM_C SINE Alu 7 139 -4 441 262 0 0 chr9 36394433 36394536 -105876908 + MLT1F1 LTR MaLR 23 125 -442 2520 161 89 30 chr9 36394536 36395095 -105876349 + L1MD3 LINE L1 7404 7995 0 325 346 19 37 chr9 36395106 36395268 -105876176 + L1MEd LINE L1 892 1050 -5069 1943 141 0 3 chr9 36395270 36395574 -105875870 + AluSx SINE Alu 1 303 -9 1055 157 6 0 chr9 36395574 36395746 -105875698 + AluSg/x SINE Alu 134 306 -6 369 281 79 9 chr9 36395805 36395919 -105875525 + L1M4 LINE L1 13 134 -6408 2197 118 0 0 chr9 36395921 36396226 -105875218 + AluSx SINE Alu 1 305 -7 1092 206 181 8 chr9 36396383 36396776 -105874668 + L1M4 LINE L1 4742 5202 -944 543 196 69 144 chr9 36396885 36397009 -105874435 + MIR SINE MIR 11 113 -149 659 100 0 0 chr9 36397009 36397099 -105874345 + HY4 scRNA scRNA 1 90 -3 543 196 69 144 chr9 36397099 36397229 -105874215 + MIR SINE MIR 113 251 -11 2181 99 3 0 chr9 36397303 36397605 -105873839 + AluY SINE Alu 1 303 -8 246 254 148 8 chr9 36397683 36397805 -105873639 + L1MC4a LINE L1 6195 6333 -1475 1494 148 39 8 chr9 36397814 36398070 -105873374 + MER21A LTR ERV1 1 264 -667 2905 153 113 12 chr9 36398075 36398580 -105872864 + MER21A LTR ERV1 376 931 0 1931 123 3 16 chr9 36398583 36398891 -105872553 - AluSx SINE Alu -8 304 1 807 153 0 28 chr9 36399176 36399320 -105872124 + FLAM_C SINE Alu 1 140 -3 2318 89 0 3 chr9 36399378 36399681 -105871763 - AluSg SINE Alu -8 302 1 765 173 0 0 chr9 36399772 36399899 -105871545 + FLAM_C SINE Alu 1 127 -6 48 0 0 0 chr9 36399899 36399947 -105871497 + AT_rich Low_complexity Low_complexity 1 48 0 621 192 39 39 chr9 36400519 36400649 -105870795 + FLAM_C SINE Alu 2 131 -12 230 245 255 11 chr9 36400650 36400744 -105870700 + MER5A DNA MER1_type 73 189 0 365 175 0 0 chr9 36400752 36400809 -105870635 + MER3 DNA MER1_type 1 57 -152 1942 132 0 43 chr9 36400967 36401293 -105870151 + AluJb SINE Alu 1 312 0 1987 132 0 0 chr9 36401326 36401621 -105869823 + AluSx SINE Alu 2 296 -16 1161 27 41 0 chr9 36401726 36401872 -105869572 - L1PA13 LINE L1 -4 6159 6008 1994 119 3 0 chr9 36401979 36402286 -105869158 + AluSp SINE Alu 1 308 0 2100 127 0 0 chr9 36402426 36402725 -105868719 + AluSx SINE Alu 1 299 -13 2233 99 0 0 chr9 36402935 36403239 -105868205 - AluSq SINE Alu -9 304 1 768 181 0 15 chr9 36403349 36403482 -105867962 + FLAM_C SINE Alu 3 133 0 870 206 78 37 chr9 36404670 36404706 -105866738 + L1ME LINE L1 5083 5116 -1046 2411 80 0 0 chr9 36404706 36405019 -105866425 + AluSq SINE Alu 1 313 0 870 206 78 37 chr9 36405019 36405429 -105866015 + L1ME LINE L1 5116 5541 -621 289 284 105 42 chr9 36405860 36406041 -105865403 + MIR SINE MIR 3 190 -67 2017 130 0 0 chr9 36406043 36406350 -105865094 - AluSx SINE Alu -5 307 1 1647 168 3 7 chr9 36406357 36406648 -105864796 - AluJo SINE Alu -22 290 1 2236 98 3 0 chr9 36406680 36406987 -105864457 + AluSq SINE Alu 1 308 -5 2092 84 0 4 chr9 36406992 36407266 -105864178 + AluSc SINE Alu 1 273 -36 967 84 0 21 chr9 36407408 36407550 -105863894 - AluY SINE Alu -172 139 1 216 188 0 0 chr9 36407678 36407726 -105863718 + T-rich Low_complexity Low_complexity 1 48 0 21 57 0 0 chr9 36408999 36409034 -105862410 + AT_rich Low_complexity Low_complexity 1 35 0 2315 87 0 10 chr9 36409290 36409602 -105861842 + AluY SINE Alu 1 309 -2 715 161 19 52 chr9 36409735 36409890 -105861554 - L1MA10 LINE L1 -5 6329 6180 468 0 0 0 chr9 36409900 36409952 -105861492 + (TG)n Simple_repeat Simple_repeat 1 52 0 1036 166 5 26 chr9 36409955 36410018 -105861426 + AluJo SINE Alu 51 114 -198 2071 112 0 22 chr9 36410018 36410331 -105861113 - AluSx SINE Alu -6 306 1 1036 166 5 26 chr9 36410331 36410460 -105860984 + AluJo SINE Alu 114 239 -73 870 233 40 35 chr9 36410460 36410936 -105860508 - L1MCc LINE L1 -4891 1532 1296 317 141 77 0 chr9 36410934 36411012 -105860432 - L1MCc LINE L1 -6308 115 32 * 207 0 0 0 chr9 36411093 36411116 -105860328 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1576 147 4 12 chr9 36411673 36411932 -105859512 + AluJo SINE Alu 35 291 -21 2060 70 0 0 chr9 36411932 36412189 -105859255 + AluY SINE Alu 1 258 -53 723 84 0 0 chr9 36412191 36412286 -105859158 + AluY SINE Alu 203 297 -14 244 336 19 10 chr9 36412326 36412430 -105859014 - L3 LINE CR1 -11 1566 1462 2192 106 3 0 chr9 36412475 36412787 -105858657 - AluSp SINE Alu 0 313 1 2388 63 0 0 chr9 36413067 36413367 -105858077 + AluY SINE Alu 1 300 -11 1905 133 86 15 chr9 36413367 36413706 -105857738 - MSTA LTR MaLR -64 364 2 871 297 16 39 chr9 36413707 36413802 -105857642 - HERV16 LTR ERVL -4355 641 545 1736 168 27 0 chr9 36413802 36414094 -105857350 - AluJb SINE Alu -12 300 1 871 297 16 39 chr9 36414094 36414304 -105857140 - HERV16 LTR ERVL -4451 545 343 691 271 45 41 chr9 36414338 36414582 -105856862 - HERV16 LTR ERVL -4750 246 2 488 285 146 27 chr9 36414588 36414883 -105856561 - LTR16A1 LTR ERVL -5 452 123 2466 67 3 0 chr9 36414896 36415196 -105856248 - AluY SINE Alu -10 301 1 2439 78 0 7 chr9 36415196 36415505 -105855939 - AluSq SINE Alu -6 307 1 1036 76 0 8 chr9 36415508 36415640 -105855804 - AluSp SINE Alu -181 132 2 1902 164 7 7 chr9 36415779 36416089 -105855355 - AluJb SINE Alu 0 312 3 2295 77 31 0 chr9 36416212 36416498 -105854946 - AluSq SINE Alu -18 295 1 657 226 0 0 chr9 36416565 36416680 -105854764 - FLAM_A SINE Alu -18 115 1 1540 172 10 57 chr9 36416734 36416917 -105854527 - AluJb SINE Alu 0 305 141 2269 85 24 3 chr9 36416917 36417210 -105854234 - AluSq SINE Alu -14 299 1 1540 172 10 57 chr9 36417210 36417345 -105854099 - AluJb SINE Alu -164 141 1 2889 247 77 107 chr9 36417345 36417499 -105853945 - L1M3b LINE L1 -4751 1530 1373 351 0 0 0 chr9 36417499 36417538 -105853906 + (TG)n Simple_repeat Simple_repeat 2 40 0 2220 113 0 0 chr9 36417544 36417826 -105853618 - AluSg SINE Alu -28 282 1 2889 247 77 107 chr9 36417826 36417913 -105853531 - L1M3b LINE L1 -4913 1368 1280 760 147 39 8 chr9 36417913 36418042 -105853402 - FLAM_C SINE Alu 0 133 1 2889 247 77 107 chr9 36418042 36418151 -105853293 - L1M3b LINE L1 -5001 1280 1169 2169 137 0 0 chr9 36418151 36418450 -105852994 - AluSx SINE Alu -13 299 1 2889 247 77 107 chr9 36418450 36419658 -105851786 - L1M3b LINE L1 -5112 1169 11 2366 92 0 3 chr9 36419667 36419973 -105851471 - AluSg SINE Alu -5 305 1 29 0 0 0 chr9 36419973 36420002 -105851442 + AT_rich Low_complexity Low_complexity 1 29 0 1873 202 38 58 chr9 36420011 36420222 -105851222 - L1MD3 LINE L1 -13 7982 7768 1881 148 0 37 chr9 36420222 36420546 -105850898 - AluJb SINE Alu 0 312 1 1873 202 38 58 chr9 36420546 36420814 -105850630 - L1MD3 LINE L1 -227 7768 7513 610 136 64 16 chr9 36420796 36420921 -105850523 - L1MD3 LINE L1 -947 7048 6918 * 2231 77 3 20 chr9 36421513 36421810 -105849634 - AluSp SINE Alu -16 297 6 583 118 59 0 chr9 36422476 36422561 -105848883 - 5S rRNA rRNA -31 90 1 1343 154 39 0 chr9 36422641 36422849 -105848595 + AluJb SINE Alu 87 302 -10 425 281 118 67 chr9 36423066 36423364 -105848080 - L1M4 LINE L1 -1141 5005 4667 2196 113 23 3 chr9 36423364 36423664 -105847780 - AluSq SINE Alu -7 306 1 425 281 118 67 chr9 36423664 36423888 -105847556 - L1M4 LINE L1 -1479 4667 4456 543 160 0 20 chr9 36423966 36424066 -105847378 - FLAM_A SINE Alu 0 142 45 270 269 70 59 chr9 36424390 36424576 -105846868 - L1M4 LINE L1 -2244 3902 3715 1137 117 0 19 chr9 36424679 36424814 -105846630 + AluSq SINE Alu 1 134 -179 2565 53 0 3 chr9 36424814 36425113 -105846331 + AluY SINE Alu 1 298 -13 1137 117 0 19 chr9 36425113 36425139 -105846305 + AluSq SINE Alu 134 159 -154 520 116 0 107 chr9 36425241 36425353 -105846091 + AluSq SINE Alu 138 237 -76 2193 99 0 20 chr9 36425390 36425684 -105845760 - AluSx SINE Alu -24 288 1 2131 134 0 3 chr9 36426880 36427178 -105844266 + AluSx SINE Alu 1 297 -15 205 272 136 12 chr9 36427592 36427673 -105843771 - MIR3 SINE MIR -2 206 116 213 321 22 15 chr9 36428131 36428265 -105843179 + CT-rich Low_complexity Low_complexity 3 137 0 37 23 0 0 chr9 36428669 36428713 -105842731 + AT_rich Low_complexity Low_complexity 1 44 0 766 197 0 0 chr9 36428714 36428836 -105842608 + FLAM_C SINE Alu 2 123 -20 306 0 0 0 chr9 36428836 36428870 -105842574 + (CA)n Simple_repeat Simple_repeat 2 35 0 27 62 0 0 chr9 36428876 36428924 -105842520 + AT_rich Low_complexity Low_complexity 1 48 0 8994 176 36 9 chr9 36429077 36429665 -105841779 + L1P5 LINE L1 3414 3984 -2167 2319 95 0 16 chr9 36429665 36429971 -105841473 + AluSx SINE Alu 1 301 -11 8994 176 36 9 chr9 36429971 36431709 -105839735 + L1P5 LINE L1 3984 5791 -360 245 125 0 21 chr9 36431731 36431779 -105839665 + (TA)n Simple_repeat Simple_repeat 1 47 0 515 311 56 6 chr9 36432358 36432538 -105838906 + MER91A DNA MER1_type 8 196 0 281 267 130 27 chr9 36432563 36432709 -105838735 + L2 LINE L2 3108 3268 -4 2260 105 20 7 chr9 36432893 36433189 -105838255 - AluSx SINE Alu -12 300 1 2368 93 7 0 chr9 36433220 36433522 -105837922 - AluY SINE Alu -7 304 1 503 260 110 58 chr9 36433553 36433780 -105837664 + LTR33A LTR ERVL 21 268 -255 1959 90 27 111 chr9 36433780 36434113 -105837331 - AluSx SINE Alu -7 305 1 503 260 110 58 chr9 36434113 36434177 -105837267 + LTR33A LTR ERVL 268 327 -196 300 287 23 0 chr9 36434232 36434319 -105837125 - L1MC4 LINE L1 -1339 6703 6615 229 185 92 0 chr9 36434335 36434400 -105837044 - L1MC4 LINE L1 -1875 5933 5863 400 260 0 0 chr9 36434404 36434492 -105836952 - L1MC4 LINE L1 -530 5591 5513 824 154 15 0 chr9 36434493 36434623 -105836821 + FLAM_C SINE Alu 2 133 0 1846 110 8 4 chr9 36434655 36434910 -105836534 - AluSx SINE Alu -11 301 46 789 162 67 95 chr9 36435011 36435136 -105836308 - AluJb SINE Alu -100 212 85 1567 172 0 55 chr9 36435136 36435272 -105836172 + AluJo SINE Alu 1 143 -169 1918 162 0 13 chr9 36435272 36435575 -105835869 + AluJb SINE Alu 1 299 -13 1868 168 3 3 chr9 36435580 36435889 -105835555 + AluSx SINE Alu 1 309 -3 207 0 0 0 chr9 36435892 36435915 -105835529 + (TAAAA)n Simple_repeat Simple_repeat 3 25 0 1567 172 0 55 chr9 36435915 36436059 -105835385 + AluJo SINE Alu 149 275 -37 789 162 67 95 chr9 36436059 36436143 -105835301 - AluJb SINE Alu -227 85 9 520 261 102 34 chr9 36436150 36436235 -105835209 - L1MC4 LINE L1 -622 5499 5421 2312 101 0 3 chr9 36436235 36436531 -105834913 + AluSg SINE Alu 1 295 -15 520 261 102 34 chr9 36436531 36436883 -105834561 - L1MC4 LINE L1 -700 5421 5026 2352 97 3 0 chr9 36437466 36437775 -105833669 - AluY SINE Alu -1 310 1 197 224 20 0 chr9 36437870 36437919 -105833525 + L2 LINE L2 3264 3313 0 2366 97 3 10 chr9 36438272 36438583 -105832861 - AluSp SINE Alu -4 309 1 2088 130 3 0 chr9 36438583 36438876 -105832568 - AluSx SINE Alu -16 296 3 2088 103 30 17 chr9 36438878 36439178 -105832266 - AluSx SINE Alu -8 304 1 1082 188 0 0 chr9 36439181 36439357 -105832087 - AluJ SINE Alu -8 304 129 973 189 17 6 chr9 36439399 36439574 -105831870 - AluJb SINE Alu -135 177 1 207 0 0 0 chr9 36439574 36439597 -105831847 + (TTTTA)n Simple_repeat Simple_repeat 4 26 0 1132 188 16 5 chr9 36439599 36439791 -105831653 - AluJb SINE Alu -32 280 87 407 120 40 53 chr9 36439794 36439869 -105831575 - AluJ SINE Alu -175 137 64 1629 129 40 63 chr9 36439933 36440236 -105831208 + AluJb SINE Alu 1 296 -16 221 234 0 0 chr9 36440311 36440358 -105831086 - L3b LINE CR1 0 1583 1537 969 148 12 0 chr9 36440358 36440520 -105830924 - AluJb SINE Alu -12 300 137 190 308 64 0 chr9 36440521 36440599 -105830845 - MIR3 SINE MIR -40 168 86 1422 152 152 8 chr9 36441746 36442010 -105829434 - AluSx SINE Alu 0 302 1 396 262 98 0 chr9 36442500 36442622 -105828822 + L2 LINE L2 3136 3269 -3 977 176 0 18 chr9 36442737 36442907 -105828537 - AluJo SINE Alu -24 288 122 880 201 148 27 chr9 36442953 36443326 -105828118 + L1MC5 LINE L1 7408 7825 -136 1080 170 55 85 chr9 36443340 36443376 -105828068 + MER21A LTR ERV1 1 37 -894 486 0 0 0 chr9 36443376 36443430 -105828014 + (CA)n Simple_repeat Simple_repeat 2 55 0 1080 170 55 85 chr9 36443430 36443623 -105827821 + MER21A LTR ERV1 37 223 -708 1683 120 132 0 chr9 36443623 36443881 -105827563 + AluSx SINE Alu 1 292 -20 1080 170 55 85 chr9 36443881 36443921 -105827523 + MER21A LTR ERV1 223 263 -668 2670 181 52 24 chr9 36443927 36444468 -105826976 + MER21A LTR ERV1 376 931 0 237 65 0 0 chr9 36444484 36444515 -105826929 + (TTG)n Simple_repeat Simple_repeat 3 33 0 1868 108 0 0 chr9 36444518 36444759 -105826685 - AluSx SINE Alu -37 275 35 405 109 0 16 chr9 36444773 36444837 -105826607 - Alu SINE Alu -254 64 2 661 102 22 22 chr9 36444955 36445092 -105826352 + (TCCCC)n Simple_repeat Simple_repeat 4 140 0 1394 152 25 118 chr9 36445094 36445272 -105826172 - AluJo SINE Alu -24 288 150 1822 135 43 3 chr9 36445272 36445554 -105825890 - AluJb SINE Alu -19 293 1 1394 152 25 118 chr9 36445554 36445690 -105825754 - AluJo SINE Alu -162 150 3 2527 47 7 3 chr9 36446177 36446474 -105824970 + AluY SINE Alu 1 298 -13 985 159 46 0 chr9 36446912 36447063 -105824381 + FRAM SINE Alu 1 158 -18 1720 158 13 23 chr9 36447439 36447742 -105823702 + AluJb SINE Alu 1 300 -12 2141 86 79 0 chr9 36448078 36448358 -105823086 + AluSp SINE Alu 1 302 -11 207 0 0 0 chr9 36448377 36448400 -105823044 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 235 271 0 0 chr9 36448589 36448648 -105822796 - L1MC4 LINE L1 -1336 6706 6648 26 30 0 0 chr9 36449045 36449078 -105822366 + AT_rich Low_complexity Low_complexity 1 33 0 1239 188 73 8 chr9 36449081 36449342 -105822102 - L1MB5 LINE L1 -8 6166 5889 824 148 99 25 chr9 36449342 36449504 -105821940 - AluJo/FRAM SINE Alu -5 307 134 1553 145 25 0 chr9 36449504 36449746 -105821698 - AluJb SINE Alu -2 310 63 963 125 10 95 chr9 36449748 36449948 -105821496 - L1MA6 LINE L1 -171 6129 5947 2034 125 18 0 chr9 36450116 36450397 -105821047 - AluSx SINE Alu -26 286 1 340 66 49 0 chr9 36450429 36450490 -105820954 - L1PA16 LINE L1 0 6166 6103 812 177 14 0 chr9 36450504 36450645 -105820799 - L1MA6 LINE L1 -338 5962 5820 856 102 0 16 chr9 36450645 36450773 -105820671 - AluSg/x SINE Alu 0 310 185 1684 92 0 9 chr9 36450832 36451059 -105820385 + AluSc SINE Alu 1 225 -84 1841 146 77 5 chr9 36451167 36451560 -105819884 - L1MB5 LINE L1 -731 5602 5188 2227 123 3 3 chr9 36451563 36451873 -105819571 - AluSx SINE Alu -2 310 1 2356 106 0 0 chr9 36452245 36452548 -105818896 - AluSg SINE Alu -7 303 1 2086 121 0 4 chr9 36452548 36452829 -105818615 - AluSc SINE Alu -29 280 1 1165 52 7 0 chr9 36452830 36452966 -105818478 - AluSq/x SINE Alu -176 137 1 2222 95 0 7 chr9 36453072 36453356 -105818088 - AluSg SINE Alu -28 282 1 595 173 0 2 chr9 36453890 36454100 -105817344 + AluJ SINE Alu 3 263 -49 441 0 0 0 chr9 36454120 36454169 -105817275 + (TG)n Simple_repeat Simple_repeat 2 50 0 1945 98 66 7 chr9 36454215 36454501 -105816943 - AluSq SINE Alu -10 303 1 2272 77 44 0 chr9 36454625 36454923 -105816521 - AluY SINE Alu 0 311 1 1599 143 0 0 chr9 36455056 36455287 -105816157 - AluSx SINE Alu -81 231 1 1719 98 0 0 chr9 36456206 36456430 -105815014 - AluSg/x SINE Alu -4 308 85 870 295 137 8 chr9 36456511 36456996 -105814448 - L2 LINE L2 -2 3311 2761 3562 137 86 16 chr9 36457435 36457491 -105813953 + Tigger3b DNA MER2_type 21 72 -2956 823 157 0 15 chr9 36457491 36457625 -105813819 + FLAM_C SINE Alu 1 132 -1 3562 137 86 16 chr9 36457625 36458254 -105813190 + Tigger3b DNA MER2_type 72 754 -477 255 189 0 0 chr9 36458290 36458343 -105813101 + (TG)n Simple_repeat Simple_repeat 2 54 0 1282 112 6 0 chr9 36458637 36458806 -105812638 - AluSq SINE Alu -143 170 1 2258 72 13 16 chr9 36458808 36459112 -105812332 - AluY SINE Alu -8 303 1 2555 55 0 0 chr9 36459120 36459429 -105812015 - AluY SINE Alu -2 309 1 700 116 80 0 chr9 36459665 36459777 -105811667 - AluJo SINE Alu -177 135 15 2107 114 0 0 chr9 36459858 36460180 -105811264 - AluSx SINE Alu 0 324 3 940 95 0 14 chr9 36460289 36460437 -105811007 + (TTTC)n Simple_repeat Simple_repeat 2 147 0 1644 79 0 0 chr9 36460437 36460640 -105810804 - AluY SINE Alu -41 270 68 1156 67 0 0 chr9 36460640 36460775 -105810669 - AluY SINE Alu -176 135 1 2869 112 26 33 chr9 36460775 36460954 -105810490 + Tigger3b DNA MER2_type 764 943 -2085 2073 102 3 88 chr9 36460954 36461296 -105810148 - AluSp SINE Alu 0 313 1 2869 112 26 33 chr9 36461296 36461572 -105809872 + Tigger3b DNA MER2_type 943 1216 -15 261 298 81 56 chr9 36461816 36461977 -105809467 + L2 LINE L2 2588 2752 -562 211 350 87 0 chr9 36462319 36462422 -105809022 - L2 LINE L2 -11 3261 3150 4093 140 21 55 chr9 36462642 36462705 -105808739 - L1MB7 LINE L1 -5 6179 6115 1955 141 3 7 chr9 36462705 36463004 -105808440 - AluJb SINE Alu -14 298 1 4093 140 21 55 chr9 36463004 36463760 -105807684 - L1MB7 LINE L1 -69 6115 5388 1928 103 4 4 chr9 36464192 36464445 -105806999 - AluSx SINE Alu -23 289 37 399 341 50 0 chr9 36464796 36464975 -105806469 + MIR SINE MIR 75 262 0 663 230 157 39 chr9 36465806 36466036 -105805408 + MIR SINE MIR 6 262 0 1488 165 112 0 chr9 36467323 36467583 -105803861 - AluJb SINE Alu -12 290 2 1883 134 20 3 chr9 36467662 36467961 -105803483 - AluSx SINE Alu -8 304 1 1908 145 0 13 chr9 36468615 36468926 -105802518 - AluSx SINE Alu -5 307 1 2742 79 37 80 chr9 36468926 36468983 -105802461 - L1MA1 LINE L1 -180 6122 6064 2162 90 7 0 chr9 36468983 36469283 -105802161 - AluSg SINE Alu -8 302 1 2742 79 37 80 chr9 36469283 36469601 -105801843 - L1MA1 LINE L1 -238 6064 5765 2062 117 3 0 chr9 36469601 36469899 -105801545 - AluSq SINE Alu -14 299 1 2742 79 37 80 chr9 36469899 36470023 -105801421 - L1MA1 LINE L1 -537 5765 5637 24 0 0 0 chr9 36470060 36470084 -105801360 + AT_rich Low_complexity Low_complexity 1 24 0 1039 130 79 6 chr9 36470158 36470335 -105801109 - AluJo SINE Alu -122 190 1 270 300 154 33 chr9 36470349 36470622 -105800822 - HAL1 LINE L1 -1543 964 659 483 302 187 34 chr9 36470662 36471020 -105800424 - HAL1 LINE L1 -1953 554 142 712 139 0 0 chr9 36471027 36471128 -105800316 + FLAM_C SINE Alu 17 117 -26 1595 149 90 10 chr9 36471214 36471502 -105799942 - AluJb SINE Alu -1 311 1 184 330 55 18 chr9 36471608 36471717 -105799727 - L2 LINE L2 -4 3268 3156 1825 151 7 0 chr9 36472552 36472856 -105798588 - AluSx SINE Alu -3 309 4 377 293 92 43 chr9 36472901 36473153 -105798291 - L1ME LINE L1 -335 5786 5519 2188 93 7 0 chr9 36473179 36473470 -105797974 - AluSg SINE Alu -17 293 1 1768 184 0 3 chr9 36483323 36483627 -105787817 + AluJo SINE Alu 1 303 -9 762 153 183 0 chr9 36483977 36484114 -105787330 - MER20 DNA MER1_type 0 219 58 270 264 157 16 chr9 36484187 36484308 -105787136 + MIR3 SINE MIR 18 155 -53 284 318 0 11 chr9 36484619 36484707 -105786737 + (CA)n Simple_repeat Simple_repeat 2 88 0 690 274 103 27 chr9 36484960 36485210 -105786234 + L1MC4 LINE L1 5345 5574 -547 805 150 0 30 chr9 36485210 36485343 -105786101 + FLAM_A SINE Alu 1 129 -4 690 274 103 27 chr9 36485343 36485537 -105785907 + L1MC4 LINE L1 5574 5823 -298 242 283 53 26 chr9 36485646 36485759 -105785685 + HAL1b LINE L1 1204 1319 -29 1962 119 0 3 chr9 36485825 36486133 -105785311 + AluSx SINE Alu 1 307 0 340 208 19 28 chr9 36486849 36486955 -105784489 - L1MC4a LINE L1 -1897 5911 5807 1608 160 44 27 chr9 36487072 36487365 -105784079 - AluJb SINE Alu -14 298 1 995 138 120 71 chr9 36487495 36487661 -105783783 - MER46A DNA MER2_type -2495 236 55 1702 158 0 54 chr9 36487661 36487812 -105783632 + AluJb SINE Alu 1 128 -184 342 0 0 0 chr9 36487812 36487850 -105783594 + (TA)n Simple_repeat Simple_repeat 2 39 0 1702 158 0 54 chr9 36487850 36488014 -105783430 + AluJb SINE Alu 128 299 -13 995 138 120 71 chr9 36488014 36488072 -105783372 - MER46A DNA MER2_type -2676 55 1 311 197 33 0 chr9 36488798 36488859 -105782585 - MIR3 SINE MIR -9 199 137 718 110 0 47 chr9 36488864 36488991 -105782453 - FLAM_C SINE Alu 0 143 23 2114 110 0 26 chr9 36489276 36489585 -105781859 + AluSx SINE Alu 1 301 -11 296 234 97 106 chr9 36490026 36490295 -105781149 + L1MC4 LINE L1 5801 6071 -1971 1737 177 0 3 chr9 36490295 36490606 -105780838 - AluJo SINE Alu -2 310 1 296 234 97 106 chr9 36490606 36491037 -105780407 + L1MC4 LINE L1 6071 6505 -1537 1944 151 0 0 chr9 36491037 36491329 -105780115 - AluJb SINE Alu -20 292 1 296 234 97 106 chr9 36491329 36491535 -105779909 + L1MC4 LINE L1 6505 6711 -1331 2176 108 0 3 chr9 36491535 36491842 -105779602 + AluSg SINE Alu 3 308 -2 296 234 97 106 chr9 36491842 36492616 -105778828 + L1MC4 LINE L1 6711 7495 -547 1549 138 43 20 chr9 36492663 36492967 -105778477 - MER33 DNA MER1_type -22 302 1 432 236 0 50 chr9 36492971 36493132 -105778312 + L1MC5 LINE L1 7345 7497 -464 679 208 101 68 chr9 36493139 36493306 -105778138 + L1MC5 LINE L1 7547 7707 -254 1912 108 35 14 chr9 36493306 36493592 -105777852 - AluSq SINE Alu -21 292 1 679 208 101 68 chr9 36493592 36493637 -105777807 + L1MC5 LINE L1 7707 7749 -212 2249 101 0 0 chr9 36493637 36493944 -105777500 - AluSx SINE Alu -5 307 1 679 208 101 68 chr9 36493944 36494095 -105777349 + L1MC5 LINE L1 7749 7923 -38 2316 46 0 0 chr9 36494537 36494856 -105776588 - AluY SINE Alu 0 319 1 705 189 8 0 chr9 36494946 36495068 -105776376 + FLAM_A SINE Alu 1 123 -19 2230 82 10 0 chr9 36495079 36495370 -105776074 + AluSc SINE Alu 1 294 -15 2512 68 0 0 chr9 36495372 36495683 -105775761 + AluY SINE Alu 1 311 0 1091 163 22 0 chr9 36496210 36496394 -105775050 + AluJo SINE Alu 108 295 -17 252 86 0 0 chr9 36496612 36496647 -105774797 + (A)n Simple_repeat Simple_repeat 1 35 0 1601 197 0 3 chr9 36497920 36498210 -105773234 - AluJo SINE Alu -23 289 1 745 109 130 115 chr9 36498210 36498402 -105773042 + AluJb SINE Alu 118 312 0 811 92 0 84 chr9 36498465 36498596 -105772848 - FLAM_C SINE Alu -7 136 17 459 304 187 34 chr9 36498603 36498961 -105772483 + HAL1 LINE L1 142 554 -1953 1155 223 24 24 chr9 36499508 36499804 -105771640 + AluJb SINE Alu 3 298 -4 1680 140 15 11 chr9 36499978 36500243 -105771201 - AluSx SINE Alu -46 266 1 2376 78 0 0 chr9 36500614 36500923 -105770521 - AluSc SINE Alu 0 309 1 1920 131 7 0 chr9 36501324 36501621 -105769823 + AluSq SINE Alu 1 299 -14 2420 95 38 7 chr9 36501630 36501995 -105769449 + L1MA1 LINE L1 5731 6119 -183 1869 162 0 0 chr9 36501997 36502293 -105769151 + AluSx SINE Alu 1 296 -16 823 136 15 15 chr9 36502306 36502438 -105769006 + FLAM_C SINE Alu 1 132 -1 2067 110 0 3 chr9 36502444 36502734 -105768710 + AluSc SINE Alu 1 289 -20 295 308 60 34 chr9 36502839 36502956 -105768488 - MIR SINE MIR -137 125 6 2162 106 0 6 chr9 36503006 36503317 -105768127 + AluSg SINE Alu 1 309 -1 333 200 163 22 chr9 36503949 36504084 -105767360 - L1ME4a LINE L1 0 6121 5968 276 247 90 11 chr9 36504179 36504268 -105767176 - MIR SINE MIR -71 137 42 545 288 29 0 chr9 36504739 36504878 -105766566 + MIR SINE MIR 8 150 -112 949 97 8 0 chr9 36504878 36505012 -105766432 + AluSq/x SINE Alu 1 135 -178 2186 102 3 3 chr9 36505012 36505316 -105766128 + AluSq SINE Alu 1 304 -9 1536 167 59 14 chr9 36505720 36506008 -105765436 + AluJb SINE Alu 1 301 -11 213 303 159 41 chr9 36506068 36506213 -105765231 - MIR3 SINE MIR -32 230 69 2764 13 0 0 chr9 36506888 36507199 -105764245 + AluYa5 SINE Alu 1 311 0 2094 129 0 0 chr9 36507909 36508211 -105763233 - AluSx SINE Alu -10 302 1 443 339 110 8 chr9 36508259 36508495 -105762949 + MIR SINE MIR 3 262 0 275 70 0 47 chr9 36508772 36508815 -105762629 - MER5B DNA MER1_type -16 162 122 3331 131 68 11 chr9 36508817 36509391 -105762053 + L1MB7 LINE L1 5524 6130 -54 972 140 60 0 chr9 36509408 36509558 -105761886 - U2 snRNA snRNA -1 187 29 286 149 0 0 chr9 36509585 36509632 -105761812 - U2 snRNA snRNA -141 47 1 310 92 0 154 chr9 36509632 36509655 -105761789 + L1MB7 LINE L1 6113 6138 -46 2117 117 0 0 chr9 36509655 36509964 -105761480 + AluSq SINE Alu 1 309 -4 1889 138 0 19 chr9 36509970 36510281 -105761163 + AluJb SINE Alu 1 305 -7 310 92 0 154 chr9 36510281 36510315 -105761129 + L1MB7 LINE L1 6143 6167 -17 289 194 0 42 chr9 36510321 36510393 -105761051 + L1MB7 LINE L1 6097 6165 -19 288 228 0 18 chr9 36510403 36510460 -105760984 - MER5B DNA MER1_type -49 129 74 1823 252 70 74 chr9 36510476 36510891 -105760553 + L1ME3A LINE L1 5173 5588 -582 1829 137 0 23 chr9 36510891 36511190 -105760254 + AluJb SINE Alu 21 312 0 1823 252 70 74 chr9 36511190 36511780 -105759664 + L1ME3A LINE L1 5588 6168 -2 190 217 65 0 chr9 36511801 36511847 -105759597 - MER5B DNA MER1_type -129 49 1 21 0 0 0 chr9 36511908 36511929 -105759515 + AT_rich Low_complexity Low_complexity 1 21 0 1463 148 82 59 chr9 36512231 36512378 -105759066 + AluJo SINE Alu 1 143 -169 2389 77 0 3 chr9 36512378 36512689 -105758755 + AluY SINE Alu 1 310 -1 1463 148 82 59 chr9 36512689 36512846 -105758598 + AluJo SINE Alu 143 312 0 2176 96 0 0 chr9 36512937 36513248 -105758196 + AluSx SINE Alu 1 312 0 807 302 31 43 chr9 36513811 36514255 -105757189 + MLT1K LTR MaLR 142 580 -8 1092 161 6 17 chr9 36514638 36514812 -105756632 + FAM SINE Alu 4 175 0 1682 171 7 13 chr9 36515089 36515393 -105756051 + AluJo SINE Alu 1 302 -10 414 0 0 0 chr9 36515734 36515780 -105755664 + (CA)n Simple_repeat Simple_repeat 1 46 0 2258 123 7 0 chr9 36517477 36517785 -105753659 - AluSx SINE Alu -2 310 1 183 409 0 0 chr9 36517868 36517934 -105753510 - L2 LINE L2 -3 3269 3204 644 247 6 62 chr9 36518228 36518406 -105753038 + MIR3 SINE MIR 35 202 -6 2224 88 11 67 chr9 36518699 36519072 -105752372 + MER4A LTR ERV1 1 352 -312 430 103 0 29 chr9 36519112 36519180 -105752264 + MER4A LTR ERV1 356 421 -243 559 151 216 29 chr9 36519287 36519426 -105752018 + MER4C LTR ERV1 301 465 0 2330 62 101 146 chr9 36519984 36520083 -105751361 + L1ME2 LINE L1 5278 5380 -954 2125 122 7 0 chr9 36520083 36520378 -105751066 + AluSx SINE Alu 1 297 -15 2298 70 17 7 chr9 36520378 36520678 -105750766 + AluY SINE Alu 1 303 -8 2330 62 101 146 chr9 36520678 36520851 -105750593 + L1ME2 LINE L1 5379 5558 -776 1579 160 80 21 chr9 36520851 36521138 -105750306 - AluJo SINE Alu -8 304 1 2330 62 101 146 chr9 36521138 36521248 -105750196 + L1ME2 LINE L1 5558 5671 -663 1477 80 45 5 chr9 36521248 36521447 -105749997 + AluSp SINE Alu 90 296 -17 2330 62 101 146 chr9 36521447 36521762 -105749682 + L1ME2 LINE L1 5671 5999 -335 247 154 0 0 chr9 36521762 36521801 -105749643 + MER3 DNA MER1_type 11 49 -160 2330 62 101 146 chr9 36521801 36521926 -105749518 + L1ME2 LINE L1 5999 6334 0 371 97 0 16 chr9 36522001 36522063 -105749381 + (TAGG)n Simple_repeat Simple_repeat 1 61 0 321 26 0 0 chr9 36522077 36522115 -105749329 + (CAGA)n Simple_repeat Simple_repeat 3 40 0 1593 143 7 80 chr9 36522117 36522280 -105749164 - AluJo SINE Alu -34 278 143 1869 167 3 7 chr9 36522280 36522589 -105748855 + AluJb SINE Alu 1 308 0 1593 143 7 80 chr9 36522589 36522723 -105748721 - AluJo SINE Alu -169 143 1 2579 50 0 0 chr9 36522823 36523121 -105748323 + AluY SINE Alu 1 298 -13 2473 42 0 36 chr9 36523130 36523436 -105748008 + AluY SINE Alu 1 295 -16 2378 85 0 0 chr9 36524371 36524664 -105746780 + AluY SINE Alu 6 298 -13 2329 71 10 7 chr9 36525148 36525444 -105746000 + AluSq SINE Alu 1 297 -16 257 169 0 15 chr9 36525964 36526029 -105745415 + (TA)n Simple_repeat Simple_repeat 1 64 0 2144 107 0 4 chr9 36526074 36526354 -105745090 - AluSx SINE Alu -20 292 14 351 132 15 29 chr9 36526386 36526454 -105744990 + Alu SINE Alu 236 302 0 22 35 0 0 chr9 36526646 36526675 -105744769 + AT_rich Low_complexity Low_complexity 1 29 0 366 23 0 0 chr9 36526690 36526733 -105744711 + (TG)n Simple_repeat Simple_repeat 2 44 0 2125 85 20 14 chr9 36527259 36527553 -105743891 - AluSq SINE Alu -17 296 1 258 32 0 0 chr9 36527736 36527767 -105743677 + (A)n Simple_repeat Simple_repeat 1 31 0 1816 126 0 8 chr9 36528139 36528402 -105743042 - AluSx SINE Alu -18 294 34 334 167 86 126 chr9 36528421 36528458 -105742986 - L1ME4a LINE L1 0 6121 6084 1835 147 0 11 chr9 36528458 36528737 -105742707 + AluJb SINE Alu 20 295 -17 334 167 86 126 chr9 36528737 36528873 -105742571 - L1ME4a LINE L1 -37 6084 5955 2343 68 10 26 chr9 36528873 36529184 -105742260 - AluY SINE Alu -5 306 1 1774 166 0 71 chr9 36529186 36529355 -105742089 - AluJb SINE Alu -9 303 124 2103 134 0 3 chr9 36529355 36529647 -105741797 - AluSx SINE Alu -16 296 6 1774 166 0 71 chr9 36529647 36529661 -105741783 - AluJb SINE Alu -188 124 111 2381 77 3 0 chr9 36529661 36529959 -105741485 - AluY SINE Alu -12 299 1 1774 166 0 71 chr9 36529959 36530100 -105741344 - AluJb SINE Alu -201 111 1 261 343 105 9 chr9 36530121 36530226 -105741218 - L2 LINE L2 -476 2838 2724 1926 161 3 0 chr9 36530453 36530751 -105740693 + AluJo SINE Alu 1 299 -13 1846 180 0 6 chr9 36532480 36532791 -105738653 - AluJo SINE Alu -3 309 1 21 0 0 0 chr9 36532798 36532819 -105738625 + AT_rich Low_complexity Low_complexity 1 21 0 2531 58 0 0 chr9 36533406 36533700 -105737744 + AluY SINE Alu 1 294 -17 1606 206 14 0 chr9 36534049 36534335 -105737109 - AluJo SINE Alu -22 290 1 667 120 15 2 chr9 36534601 36534861 -105736583 + AluSx SINE Alu 1 312 0 1882 143 18 7 chr9 36534948 36535234 -105736210 - AluJo SINE Alu -19 293 5 2168 128 0 0 chr9 36535258 36535554 -105735890 - AluSx SINE Alu -16 296 1 1829 159 0 3 chr9 36535768 36536082 -105735362 + AluJo SINE Alu 1 313 0 2581 65 0 0 chr9 36536230 36536536 -105734908 + AluY SINE Alu 1 306 -5 273 219 0 0 chr9 36537992 36538056 -105733388 + L1MC4 LINE L1 6640 6703 -1339 257 240 0 62 chr9 36538040 36538136 -105733308 - L1MC4 LINE L1 -1339 6703 6614 * 246 161 18 36 chr9 36538136 36538192 -105733252 + (CATATA)n Simple_repeat Simple_repeat 6 60 0 24 53 0 0 chr9 36538635 36538673 -105732771 + AT_rich Low_complexity Low_complexity 1 38 0 2235 94 3 3 chr9 36539053 36539341 -105732103 - AluSx SINE Alu -18 294 7 802 201 43 42 chr9 36539379 36539784 -105731660 + MLT1H1 LTR MaLR 10 555 0 25 0 0 0 chr9 36539790 36539815 -105731629 + AT_rich Low_complexity Low_complexity 1 25 0 246 32 0 0 chr9 36539829 36539860 -105731584 + (TTA)n Simple_repeat Simple_repeat 1 31 0 518 224 0 0 chr9 36539873 36539958 -105731486 - FLAM_A SINE Alu -56 86 2 700 188 8 0 chr9 36539968 36540085 -105731359 - L1MC1 LINE L1 0 6333 6216 1957 146 0 25 chr9 36540088 36540404 -105731040 - AluJo SINE Alu -4 308 1 2204 104 6 19 chr9 36540498 36540814 -105730630 - AluSx SINE Alu 0 312 1 758 215 126 60 chr9 36540971 36541273 -105730171 + L1MC4a LINE L1 5583 5904 -1904 35 41 0 0 chr9 36541543 36541592 -105729852 + AT_rich Low_complexity Low_complexity 1 49 0 2082 127 0 20 chr9 36542095 36542394 -105729050 + AluSx SINE Alu 1 293 -19 1991 113 35 3 chr9 36542418 36542702 -105728742 + AluSc SINE Alu 1 293 -16 212 278 19 0 chr9 36542995 36543049 -105728395 - L2 LINE L2 -8 3264 3210 2166 82 7 43 chr9 36543140 36543283 -105728161 + AluSg SINE Alu 1 129 -181 2312 101 0 10 chr9 36543283 36543591 -105727853 + AluSq SINE Alu 1 305 -8 2166 82 7 43 chr9 36543591 36543752 -105727692 + AluSg SINE Alu 129 294 -16 2296 184 30 11 chr9 36543803 36544316 -105727128 + Tigger7 DNA MER2_type 1 2490 -1 290 102 0 0 chr9 36544514 36544563 -105726881 + FLAM SINE Alu 86 127 -6 231 167 0 0 chr9 36544672 36544714 -105726730 + (CAGCC)n Simple_repeat Simple_repeat 5 46 0 216 97 0 0 chr9 36546683 36546714 -105724730 + (A)n Simple_repeat Simple_repeat 1 31 0 2357 102 0 0 chr9 36546726 36547039 -105724405 + AluSq SINE Alu 1 313 0 276 279 29 31 chr9 36547620 36547771 -105723673 + MIR3 SINE MIR 4 150 -66 2165 133 3 0 chr9 36547949 36548257 -105723187 - AluJo SINE Alu -3 309 1 538 283 80 22 chr9 36548386 36548612 -105722832 + Charlie8 DNA MER1_type 44 282 -2135 298 181 0 42 chr9 36548647 36548719 -105722725 - L1MB8 LINE L1 -142 6036 5968 880 138 41 0 chr9 36548728 36548851 -105722593 - FLAM_C SINE Alu -5 128 1 1805 161 3 16 chr9 36548923 36549227 -105722217 + AluJb SINE Alu 1 300 -12 265 250 60 50 chr9 36550183 36550283 -105721161 - MIR SINE MIR -76 186 86 559 340 43 39 chr9 36550604 36551087 -105720357 + L2 LINE L2 2337 2821 -493 25 0 0 0 chr9 36551313 36551338 -105720106 + AT_rich Low_complexity Low_complexity 1 25 0 250 319 12 102 chr9 36551339 36551409 -105720035 + L2 LINE L2 3118 3193 -79 1929 152 0 23 chr9 36551409 36551711 -105719733 + AluJo SINE Alu 3 297 -15 250 319 12 102 chr9 36551711 36551762 -105719682 + L2 LINE L2 3193 3223 -49 2012 137 13 3 chr9 36551762 36552069 -105719375 + AluSx SINE Alu 1 310 -2 250 319 12 102 chr9 36552069 36552112 -105719332 + L2 LINE L2 3223 3268 -4 932 280 113 46 chr9 36552333 36552426 -105719018 - L2 LINE L2 0 3313 3228 1671 161 17 27 chr9 36552426 36552718 -105718726 + AluJo SINE Alu 1 289 -23 932 280 113 46 chr9 36552718 36553320 -105718124 - L2 LINE L2 -85 3228 2584 266 263 126 21 chr9 36553639 36553734 -105717710 - MIR3 SINE MIR -10 198 94 242 237 53 40 chr9 36553871 36553947 -105717497 + MIR SINE MIR 186 262 0 221 306 97 0 chr9 36554041 36554103 -105717341 - MIR3 SINE MIR -32 176 109 558 198 0 0 chr9 36554110 36554216 -105717228 + FRAM SINE Alu 71 176 0 243 216 0 20 chr9 36554998 36555049 -105716395 - L2 LINE L2 -4 3268 3219 2300 49 3 11 chr9 36556473 36556782 -105714662 + AluY SINE Alu 1 307 0 354 285 63 51 chr9 36556868 36557026 -105714418 + MIR SINE MIR 91 250 -12 1778 65 0 55 chr9 36557031 36557340 -105714104 + AluY SINE Alu 1 292 -19 256 232 87 29 chr9 36557713 36557782 -105713662 - MIR SINE MIR -71 191 119 28 29 0 0 chr9 36558037 36558072 -105713372 + AT_rich Low_complexity Low_complexity 1 35 0 440 347 61 44 chr9 36558210 36558573 -105712871 + L2 LINE L2 2420 2788 -526 1627 177 6 61 chr9 36559713 36560041 -105711403 + AluJo SINE Alu 1 310 -2 372 306 68 50 chr9 36560155 36560377 -105711067 + MIR SINE MIR 20 245 -17 1703 273 34 62 chr9 36561160 36561834 -105709610 + MLT2F LTR ERVL 1 655 -8 256 158 123 0 chr9 36561878 36561935 -105709509 - L2 LINE L2 -215 3057 2994 676 88 68 101 chr9 36611962 36612110 -105659334 - AluSg SINE Alu -166 144 2 1389 164 44 4 chr9 36612113 36612387 -105659057 - L1MB2 LINE L1 -42 6129 5845 1114 154 0 21 chr9 36612399 36612587 -105658857 - AluSq SINE Alu -10 303 120 920 149 13 0 chr9 36612587 36612741 -105658703 - L1MB2 LINE L1 -359 5812 5657 1492 96 64 0 chr9 36612743 36612963 -105658481 - L1PA14 LINE L1 0 6161 5928 782 156 78 90 chr9 36612987 36613095 -105658349 + ORSL DNA AcHobo 23 131 -144 1910 154 3 0 chr9 36613095 36613393 -105658051 - AluSq SINE Alu -14 299 1 782 156 78 90 chr9 36613393 36613540 -105657904 + ORSL DNA AcHobo 131 275 0 2306 173 71 19 chr9 36613874 36614336 -105657108 + MER66B LTR ERV1 1 486 0 1670 99 0 0 chr9 36614364 36614587 -105656857 - AluSg/x SINE Alu -14 298 76 481 271 129 30 chr9 36614600 36615003 -105656441 - L1MC5 LINE L1 -165 7796 7354 801 186 0 21 chr9 36615013 36615147 -105656297 + AluJb SINE Alu 2 134 -178 2397 62 0 0 chr9 36615147 36615439 -105656005 + AluY SINE Alu 2 293 -18 2248 92 0 3 chr9 36615600 36615903 -105655541 - AluY SINE Alu -9 302 1 1666 130 72 0 chr9 36615907 36616184 -105655260 - AluJo SINE Alu -15 297 1 267 342 26 0 chr9 36616245 36616362 -105655082 - L1MC4 LINE L1 -593 7449 7330 440 281 114 19 chr9 36616713 36616923 -105654521 + MIR SINE MIR 13 242 -20 193 188 350 12 chr9 36618504 36618584 -105652860 - MIR SINE MIR -81 127 21 890 118 0 0 chr9 36620142 36620261 -105651183 + AluSq/x SINE Alu 1 119 -194 239 372 83 16 chr9 36620692 36620813 -105650631 - MIR3 SINE MIR -32 176 48 298 206 11 54 chr9 36621063 36621155 -105650289 + MER97c DNA MER1_type? 3 90 -1000 245 149 164 30 chr9 36621119 36621186 -105650258 - U2 snRNA snRNA -112 76 1 * 366 157 37 102 chr9 36621185 36621230 -105650214 + MER97a DNA MER1_type? 72 118 -776 2040 41 107 7 chr9 36621230 36621501 -105649943 + AluY SINE Alu 1 298 -13 366 157 37 102 chr9 36621501 36621563 -105649881 + MER97a DNA MER1_type? 118 172 -722 1760 125 114 0 chr9 36621762 36622042 -105649402 + AluSq SINE Alu 2 313 0 490 313 66 59 chr9 36622067 36622737 -105648707 - L2 LINE L2 -1 3271 2538 213 60 20 40 chr9 36622937 36622987 -105648457 + (TTTTTG)n Simple_repeat Simple_repeat 6 54 0 1904 135 0 10 chr9 36623167 36623456 -105647988 + AluSx SINE Alu 1 286 -26 697 180 16 8 chr9 36623488 36623616 -105647828 + AluJo SINE Alu 13 141 -171 1997 125 14 0 chr9 36623717 36624005 -105647439 - AluSq SINE Alu -21 292 1 1924 128 0 0 chr9 36624010 36624276 -105647168 - AluSx SINE Alu -46 266 1 392 353 65 61 chr9 36624340 36624802 -105646642 - L1ME4a LINE L1 -64 6057 5594 6925 122 25 67 chr9 36624861 36626226 -105645218 + SVA Other Other 79 1386 0 183 100 0 0 chr9 36626429 36626459 -105644985 + (A)n Simple_repeat Simple_repeat 1 30 0 2442 64 0 6 chr9 36626555 36626868 -105644576 - AluY SINE Alu 0 311 1 258 246 87 0 chr9 36627139 36627208 -105644236 + MIR SINE MIR 186 260 -2 * 377 324 98 17 chr9 36627200 36627373 -105644071 - L2 LINE L2 0 3313 3127 2124 107 7 0 chr9 36627435 36627733 -105643711 + AluSx SINE Alu 1 300 -12 2262 76 0 7 chr9 36627741 36628029 -105643415 + AluSx SINE Alu 5 290 -22 254 191 246 9 chr9 36629368 36629478 -105641966 - L2 LINE L2 0 3313 3178 1539 111 5 9 chr9 36629539 36629756 -105641688 - AluJo SINE Alu -13 299 84 2298 67 3 0 chr9 36629782 36630101 -105641343 + AluSp SINE Alu 1 320 0 2010 128 0 0 chr9 36630396 36630717 -105640727 + AluSx SINE Alu 3 323 0 2234 98 0 3 chr9 36630796 36631093 -105640351 + AluSc SINE Alu 1 296 -13 1639 152 73 13 chr9 36631109 36631425 -105640019 - L1MB7 LINE L1 -17 6167 5833 2018 150 0 13 chr9 36631431 36631745 -105639699 - AluJb SINE Alu -2 310 1 2046 111 3 7 chr9 36631980 36632299 -105639145 - AluSx SINE Alu 0 318 1 220 27 54 0 chr9 36632301 36632338 -105639106 + (TTTG)n Simple_repeat Simple_repeat 4 42 0 249 348 0 44 chr9 36632612 36632747 -105638697 - MIR3 SINE MIR -9 199 71 378 312 89 7 chr9 36632891 36633112 -105638332 + L2 LINE L2 2790 3027 -245 187 234 0 94 chr9 36633182 36633246 -105638198 + L2 LINE L2 3163 3220 -93 534 306 104 20 chr9 36633325 36633672 -105637772 + MLT1K LTR MaLR 211 586 -2 2198 108 0 0 chr9 36633773 36634070 -105637374 + AluSq SINE Alu 1 297 -16 1419 191 19 44 chr9 36634076 36634396 -105637048 + AluJo SINE Alu 1 312 0 2099 113 0 0 chr9 36634410 36634715 -105636729 - AluSx SINE Alu 0 305 1 1805 166 16 3 chr9 36634750 36635057 -105636387 + AluJo SINE Alu 1 311 -1 2109 109 0 14 chr9 36635061 36635355 -105636089 + AluSx SINE Alu 1 290 -22 209 364 73 33 chr9 36635615 36635766 -105635678 + MIR SINE MIR 16 141 -67 277 288 9 0 chr9 36636148 36636259 -105635185 + (TG)n Simple_repeat Simple_repeat 2 113 0 183 250 39 0 chr9 36637365 36637417 -105634027 + L3b LINE CR1 1352 1405 -178 519 269 47 27 chr9 36637869 36638018 -105633426 - MIR SINE MIR -4 258 107 452 279 93 5 chr9 36638021 36638225 -105633219 - LTR33 LTR ERVL -3 518 297 502 253 62 43 chr9 36638249 36638411 -105633033 - LTR33 LTR ERVL -331 190 26 206 254 60 0 chr9 36638528 36638595 -105632849 + MIR SINE MIR 35 105 -103 208 214 0 0 chr9 36639064 36639106 -105632338 + (CACCC)n Simple_repeat Simple_repeat 4 45 0 2166 115 0 0 chr9 36639386 36639703 -105631741 + AluSq SINE Alu 1 313 0 2196 114 0 0 chr9 36640074 36640372 -105631072 - AluSg SINE Alu -12 298 1 2472 53 0 3 chr9 36640372 36640670 -105630774 - AluY SINE Alu -13 298 1 350 271 181 19 chr9 36641200 36641355 -105630089 - MIR SINE MIR -11 251 72 190 289 50 6 chr9 36641708 36641780 -105629664 + MIR SINE MIR 74 140 -68 228 326 91 0 chr9 36642418 36642550 -105628894 - L2 LINE L2 -608 2706 2563 311 253 121 20 chr9 36642579 36642678 -105628766 - L3 LINE CR1 -125 1452 1344 29 0 0 0 chr9 36642965 36642994 -105628450 + AT_rich Low_complexity Low_complexity 1 29 0 282 164 0 0 chr9 36643506 36643561 -105627883 + (CA)n Simple_repeat Simple_repeat 1 55 0 2290 89 3 13 chr9 36646105 36646418 -105625026 + AluSx SINE Alu 1 310 -2 838 129 23 23 chr9 36646806 36646938 -105624506 + FLAM_C SINE Alu 2 133 0 2121 112 3 0 chr9 36650315 36650610 -105620834 - AluSx SINE Alu -15 297 2 1334 182 30 34 chr9 36650686 36650950 -105620494 - AluJo SINE Alu -16 296 34 2385 79 0 3 chr9 36651152 36651456 -105619988 + AluSq SINE Alu 1 303 -10 1296 185 0 0 chr9 36651726 36651942 -105619502 - AluJo SINE Alu -75 237 22 709 124 0 0 chr9 36651987 36652084 -105619360 + AluSg/x SINE Alu 146 242 -68 560 150 0 0 chr9 36652080 36652160 -105619284 - AluSp SINE Alu -100 213 134 * 1094 382 18 64 chr9 36652160 36652487 -105618957 - AluSx SINE Alu 0 312 1 186 43 0 0 chr9 36652503 36652526 -105618918 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 246 81 0 0 chr9 36652617 36652654 -105618790 + (CA)n Simple_repeat Simple_repeat 1 37 0 2316 82 0 19 chr9 36653277 36653592 -105617852 + AluY SINE Alu 1 309 -2 2088 114 0 13 chr9 36653606 36653742 -105617702 + AluSx SINE Alu 1 137 -175 2160 107 0 20 chr9 36653742 36654040 -105617404 + AluSp SINE Alu 1 292 -21 2088 114 0 13 chr9 36654040 36654210 -105617234 + AluSx SINE Alu 137 303 -9 445 248 74 0 chr9 36655596 36655717 -105615727 - MIR SINE MIR -83 179 50 205 350 10 90 chr9 36656303 36656503 -105614941 + MIR SINE MIR 39 222 -40 1445 88 0 0 chr9 36656505 36656686 -105614758 + AluSg SINE Alu 1 181 -129 2105 103 3 38 chr9 36657057 36657377 -105614067 + AluSc SINE Alu 1 309 0 2236 104 3 19 chr9 36657389 36657707 -105613737 + AluSp SINE Alu 1 313 0 2035 97 12 63 chr9 36658179 36658498 -105612946 - AluSq SINE Alu -10 303 1 372 250 14 71 chr9 36658563 36658703 -105612741 - L2 LINE L2 -559 2755 2624 2347 87 0 0 chr9 36659254 36659553 -105611891 - AluSg SINE Alu -11 299 1 1877 105 59 36 chr9 36659887 36660191 -105611253 + AluSq SINE Alu 1 311 -2 272 229 60 24 chr9 36660379 36660462 -105610982 + MIR SINE MIR 36 121 -87 821 81 8 32 chr9 36661015 36661138 -105610306 + FLAM_C SINE Alu 23 142 -1 2238 103 10 3 chr9 36661750 36662060 -105609384 + AluSq SINE Alu 1 312 -1 296 333 75 0 chr9 36662200 36662293 -105609151 - MIR SINE MIR -107 155 56 304 309 13 81 chr9 36662987 36663136 -105608308 + MIR SINE MIR 113 251 -11 195 261 23 57 chr9 36663275 36663363 -105608081 - L2 LINE L2 -38 3275 3191 667 150 67 25 chr9 36663431 36663551 -105607893 - FLAM_C SINE Alu -7 126 2 562 344 42 8 chr9 36667366 36667607 -105603837 - MIR SINE MIR -8 254 6 845 255 114 135 chr9 36672184 36672373 -105599071 + L2 LINE L2 2285 2476 -837 2309 62 24 0 chr9 36672373 36672661 -105598783 + AluY SINE Alu 1 295 -16 845 255 114 135 chr9 36672661 36672952 -105598492 + L2 LINE L2 2476 2772 -541 2047 114 45 10 chr9 36672952 36673242 -105598202 + AluSq SINE Alu 1 300 -13 845 255 114 135 chr9 36673242 36673811 -105597633 + L2 LINE L2 2772 3295 -18 2171 126 13 0 chr9 36674652 36674954 -105596490 + AluSx SINE Alu 1 306 -6 348 365 32 6 chr9 36676177 36676333 -105595111 + L2 LINE L2 2467 2626 -688 315 0 0 0 chr9 36676389 36676424 -105595020 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1860 142 0 0 chr9 36676431 36676706 -105594738 - AluSx SINE Alu -37 275 1 770 247 83 39 chr9 36676706 36677059 -105594385 - L1MC4 LINE L1 -4 8038 7572 185 0 40 0 chr9 36677079 36677104 -105594340 + (TA)n Simple_repeat Simple_repeat 2 27 0 1973 143 7 13 chr9 36677104 36677411 -105594033 - AluSx SINE Alu -7 305 1 695 231 52 9 chr9 36677414 36677626 -105593818 - L1ME3A LINE L1 -5 6165 5945 2425 58 0 10 chr9 36677636 36677957 -105593487 - AluY SINE Alu 0 311 1 349 339 8 0 chr9 36677995 36678125 -105593319 + L2 LINE L2 2654 2784 -530 186 71 0 0 chr9 36678175 36678203 -105593241 + (TTTTA)n Simple_repeat Simple_repeat 3 30 0 2129 112 0 18 chr9 36678205 36678490 -105592954 - AluSx SINE Alu -32 280 1 1063 189 219 0 chr9 36678519 36678747 -105592697 - AluJb SINE Alu -34 278 1 302 369 67 17 chr9 36678756 36678935 -105592509 + L2 LINE L2 2841 3028 -244 1329 142 49 0 chr9 36678935 36679139 -105592305 - AluJb SINE Alu -98 214 1 2042 148 13 0 chr9 36679190 36679494 -105591950 - AluSx SINE Alu -2 310 3 198 71 0 0 chr9 36679517 36679545 -105591899 + (TCCC)n Simple_repeat Simple_repeat 2 29 0 2094 124 6 13 chr9 36679554 36679868 -105591576 - AluSx SINE Alu 0 312 1 1105 185 219 0 chr9 36679991 36680229 -105591215 - AluJo SINE Alu -12 290 1 274 250 0 0 chr9 36680287 36680339 -105591105 + L2 LINE L2 3218 3269 -3 1472 116 41 141 chr9 36680686 36680789 -105590655 + AluJb SINE Alu 24 136 -176 1994 119 25 0 chr9 36680789 36681067 -105590377 + AluSg SINE Alu 1 285 -25 1472 116 41 141 chr9 36681067 36681086 -105590358 + AluJb SINE Alu 136 155 -157 2296 112 0 10 chr9 36681086 36681398 -105590046 + AluSx SINE Alu 1 309 -3 1472 116 41 141 chr9 36681398 36681411 -105590033 + AluJb SINE Alu 155 168 -144 2239 96 7 3 chr9 36681411 36681704 -105589740 + AluSg1 SINE Alu 1 294 -15 1472 116 41 141 chr9 36681704 36681886 -105589558 + AluJb SINE Alu 168 311 -1 580 241 36 24 chr9 36681953 36682119 -105589325 + L2 LINE L2 3131 3298 -15 234 0 0 0 chr9 36682119 36682145 -105589299 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 822 118 31 192 chr9 36682260 36682389 -105589055 + LTR23 LTR ERV1 1 149 -288 1627 174 0 52 chr9 36682389 36682587 -105588857 - AluJb SINE Alu -2 310 134 2190 93 7 35 chr9 36682587 36682897 -105588547 + AluSq SINE Alu 1 301 -12 1627 174 0 52 chr9 36682897 36683025 -105588419 - AluJb SINE Alu -178 134 1 822 118 31 192 chr9 36683025 36683043 -105588401 + LTR23 LTR ERV1 149 168 -269 1917 130 67 45 chr9 36683043 36683373 -105588071 + MER1B DNA MER1_type 1 337 0 2490 47 10 7 chr9 36683375 36683671 -105587773 - AluY SINE Alu -13 298 2 822 118 31 192 chr9 36683671 36683696 -105587748 + LTR23 LTR ERV1 169 127 -310 1353 188 21 76 chr9 36683696 36683828 -105587616 + AluJo SINE Alu 1 139 -173 2049 94 94 0 chr9 36683828 36684114 -105587330 + AluSp SINE Alu 1 313 0 1353 188 21 76 chr9 36684114 36684311 -105587133 + AluJo SINE Alu 139 312 0 822 118 31 192 chr9 36684311 36684388 -105587056 + LTR23 LTR ERV1 126 214 -223 1274 145 8 68 chr9 36684388 36684622 -105586822 + AluJb SINE Alu 1 220 -92 1012 118 0 0 chr9 36684750 36684885 -105586559 + AluY SINE Alu 115 249 -62 1484 115 28 5 chr9 36684885 36684917 -105586527 + AluSg/x SINE Alu 85 115 -197 243 0 0 0 chr9 36684917 36684944 -105586500 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1484 115 28 5 chr9 36684944 36685128 -105586316 + AluSg/x SINE Alu 115 306 -6 446 97 43 11 chr9 36685133 36685226 -105586218 + LTR23 LTR ERV1 210 305 -132 715 196 49 98 chr9 36685228 36685432 -105586012 + AluJo SINE Alu 2 195 -117 2223 94 0 17 chr9 36685481 36685803 -105585641 - AluSx SINE Alu 0 319 3 2086 116 0 33 chr9 36685809 36686112 -105585332 - AluSc SINE Alu -16 293 1 1292 113 15 49 chr9 36686253 36686423 -105585021 - AluY SINE Alu -14 297 134 2606 61 0 6 chr9 36686423 36686734 -105584710 - AluY SINE Alu -2 309 1 1292 113 15 49 chr9 36686734 36686767 -105584677 - AluY SINE Alu -177 134 101 4570 175 14 3 chr9 36686767 36687657 -105583787 + L1 LINE L1 4433 5331 -815 1354 167 5 14 chr9 36687657 36687879 -105583565 + AluJo SINE Alu 1 220 -92 303 28 0 0 chr9 36687948 36687984 -105583460 + (TA)n Simple_repeat Simple_repeat 1 36 0 977 150 70 37 chr9 36687997 36688184 -105583260 + AluJb SINE Alu 14 206 -106 2069 121 0 0 chr9 36688498 36688762 -105582682 + AluSx SINE Alu 1 264 -48 216 0 0 0 chr9 36688941 36688965 -105582479 + (CA)n Simple_repeat Simple_repeat 2 25 0 1806 173 0 26 chr9 36689996 36690302 -105581142 - AluJo SINE Alu -14 298 1 186 43 0 0 chr9 36690306 36690329 -105581115 + (TG)n Simple_repeat Simple_repeat 1 23 0 2150 119 10 0 chr9 36690397 36690690 -105580754 - AluSx SINE Alu -16 296 1 335 353 87 7 chr9 36690695 36690845 -105580599 - L1MC4a LINE L1 -1923 5885 5724 256 237 172 0 chr9 36691354 36691447 -105579997 - MIR SINE MIR -118 144 36 181 83 0 0 chr9 36691815 36691839 -105579605 - L2 LINE L2 -219 3053 3030 368 259 76 116 chr9 36692067 36692499 -105578945 - L1MC4a LINE L1 -872 5274 4860 1210 171 9 23 chr9 36692512 36692729 -105578715 + AluJb SINE Alu 87 300 -12 2090 92 29 57 chr9 36692731 36693045 -105578399 + AluY SINE Alu 1 305 -6 815 248 110 70 chr9 36693060 36693244 -105578200 - L1MC4a LINE L1 -1301 4845 4670 1749 178 3 44 chr9 36693244 36693564 -105577880 - AluJo SINE Alu -5 307 1 815 248 110 70 chr9 36693564 36693835 -105577609 - L1MC4a LINE L1 -1476 4670 4372 2318 103 0 0 chr9 36693852 36694143 -105577301 - AluY SINE Alu -20 291 1 35 0 0 0 chr9 36694146 36694181 -105577263 + AT_rich Low_complexity Low_complexity 1 35 0 638 214 41 147 chr9 36694353 36694373 -105577071 - L1MC4a LINE L1 -1757 4389 4368 1452 167 23 109 chr9 36694373 36694721 -105576723 - AluYb8 SINE Alu 0 318 1 638 214 41 147 chr9 36694721 36695039 -105576405 - L1MC4a LINE L1 -1778 4368 4104 2322 104 0 0 chr9 36695039 36695336 -105576108 + AluSx SINE Alu 1 297 -15 638 214 41 147 chr9 36695336 36695431 -105576013 - L1MC4a LINE L1 -2042 4104 4001 280 247 62 0 chr9 36695508 36695605 -105575839 + L1MC4 LINE L1 7940 8042 0 910 230 15 49 chr9 36695921 36696186 -105575258 + MIR SINE MIR 5 260 -2 198 275 0 0 chr9 36696328 36696397 -105575047 + (TA)n Simple_repeat Simple_repeat 1 69 0 237 216 115 101 chr9 36696421 36696569 -105574875 + Charlie8 DNA MER1_type 24 173 -2244 379 326 81 27 chr9 36696799 36697020 -105574424 + L1ME4a LINE L1 5659 5891 -230 718 76 98 8 chr9 36697037 36697169 -105574275 - L1MA8 LINE L1 -2 6289 6146 2265 82 0 0 chr9 36697213 36697483 -105573961 + AluSq SINE Alu 1 270 -43 227 135 0 0 chr9 36697483 36697520 -105573924 + AluSq SINE Alu 253 289 -14 3963 136 30 44 chr9 36697553 36697564 -105573880 + L1MA6 LINE L1 5510 5520 -780 1862 165 10 3 chr9 36697564 36697873 -105573571 + AluJb SINE Alu 1 311 -1 3963 136 30 44 chr9 36697873 36698415 -105573029 + L1MA6 LINE L1 5520 6051 -249 2543 84 0 0 chr9 36698415 36698726 -105572718 - AluSp SINE Alu -2 311 1 3963 136 30 44 chr9 36698726 36698973 -105572471 + L1MA6 LINE L1 6051 6300 0 228 35 0 0 chr9 36698986 36699015 -105572429 + (TTA)n Simple_repeat Simple_repeat 1 29 0 2041 136 4 0 chr9 36699015 36699294 -105572150 - AluSx SINE Alu -32 280 1 182 345 36 0 chr9 36700071 36700126 -105571318 + L3b LINE CR1 1509 1565 -18 2143 126 0 0 chr9 36700702 36701011 -105570433 + AluSq SINE Alu 1 309 0 1957 160 3 13 chr9 36701035 36701347 -105570097 + AluJb SINE Alu 2 310 -2 226 315 79 11 chr9 36701434 36701523 -105569921 + L3 LINE CR1 1226 1320 -257 2268 87 0 10 chr9 36703662 36703960 -105567484 + AluSx SINE Alu 1 295 -17 2584 63 7 0 chr9 36704770 36705073 -105566371 - AluY SINE Alu -6 305 1 322 213 88 110 chr9 36705107 36705243 -105566201 - L1MC5 LINE L1 -31 7930 7798 329 281 29 29 chr9 36705249 36705388 -105566056 + Tigger8 DNA MER2_type 401 539 -127 21 0 0 0 chr9 36705489 36705510 -105565934 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 36706841 36706863 -105564581 + AT_rich Low_complexity Low_complexity 1 22 0 216 267 31 27 chr9 36707173 36707289 -105564155 + MIR SINE MIR 38 207 -55 242 300 64 91 chr9 36707847 36707912 -105563532 - L2 LINE L2 -557 2757 2692 1432 213 52 9 chr9 36707912 36708236 -105563208 - MER58B DNA MER1_type 0 341 4 242 300 64 91 chr9 36708236 36708390 -105563054 - L2 LINE L2 -622 2692 2544 198 0 0 0 chr9 36708902 36708924 -105562520 + (GGA)n Simple_repeat Simple_repeat 1 22 0 185 235 278 17 chr9 36709498 36709613 -105561831 + MIR3 SINE MIR 1 145 -63 201 273 0 0 chr9 36709932 36709976 -105561468 - MIR SINE MIR 0 262 219 784 159 45 70 chr9 36710014 36710171 -105561273 + FRAM SINE Alu 6 158 -18 2000 137 10 7 chr9 36710171 36710464 -105560980 + AluJo SINE Alu 1 294 -18 505 238 19 9 chr9 36710465 36710591 -105560853 - MIR SINE MIR -62 146 45 1787 255 146 39 chr9 36711024 36711261 -105560183 - L2 LINE L2 -340 2974 2764 2025 122 7 0 chr9 36711261 36711549 -105559895 - AluSx SINE Alu -22 290 1 1787 255 146 39 chr9 36711549 36712107 -105559337 - L2 LINE L2 -550 2764 2094 2555 61 0 0 chr9 36712368 36712665 -105558779 - AluY SINE Alu -14 297 1 1368 169 111 69 chr9 36713244 36713676 -105557768 - LTR7 LTR ERV1 0 450 1 320 209 13 3 chr9 36714463 36714541 -105556903 - MIR SINE MIR -43 165 88 2733 23 7 3 chr9 36714561 36714871 -105556573 - AluY SINE Alu 0 311 1 2381 108 0 0 chr9 36714985 36715292 -105556152 + AluSx SINE Alu 1 307 -5 384 238 0 0 chr9 36715553 36715633 -105555811 - MIR SINE MIR -160 102 23 315 322 68 0 chr9 36716052 36716170 -105555274 - MIR3 SINE MIR -23 185 60 228 315 0 0 chr9 36716254 36716308 -105555136 + (TG)n Simple_repeat Simple_repeat 1 54 0 299 130 19 0 chr9 36716371 36716425 -105555019 + CT-rich Low_complexity Low_complexity 4 58 0 832 228 301 8 chr9 36716524 36716906 -105554538 + L2 LINE L2 2819 3312 -1 2067 121 10 7 chr9 36717528 36717825 -105553619 + AluSx SINE Alu 1 298 -14 239 0 32 0 chr9 36717825 36717856 -105553588 + (TA)n Simple_repeat Simple_repeat 2 33 0 986 158 12 12 chr9 36718110 36718275 -105553169 - AluSg/x SINE Alu -12 298 134 2498 80 0 0 chr9 36718276 36718575 -105552869 - AluSc SINE Alu -10 299 1 311 298 7 21 chr9 36718590 36718731 -105552713 - L1ME3 LINE L1 -295 5867 5729 758 263 11 0 chr9 36718863 36719038 -105552406 - MIR SINE MIR -4 258 82 413 289 95 28 chr9 36719061 36719314 -105552130 + L2 LINE L2 2318 2587 -727 341 310 83 39 chr9 36719535 36719764 -105551680 + L2 LINE L2 3025 3263 -9 561 182 94 39 chr9 36720068 36720270 -105551174 + MER106B DNA MER1_type 30 1059 0 338 264 68 27 chr9 36722379 36722527 -105548917 - MIR SINE MIR -70 192 39 670 243 78 10 chr9 36724297 36724503 -105546941 - MIR SINE MIR 0 262 43 1732 161 0 56 chr9 36724574 36724746 -105546698 - AluJb SINE Alu -7 305 158 2263 108 0 3 chr9 36724746 36725043 -105546401 - AluSx SINE Alu -12 300 5 1732 161 0 56 chr9 36725043 36725193 -105546251 - AluJb SINE Alu -154 158 1 732 154 112 0 chr9 36725193 36725362 -105546082 + Charlie5 DNA MER1_type 2437 2624 0 2311 100 30 0 chr9 36725473 36725774 -105545670 + AluSx SINE Alu 1 310 -2 2254 94 13 3 chr9 36726542 36726841 -105544603 + AluSg SINE Alu 1 302 -8 384 202 115 49 chr9 36726972 36727155 -105544289 + MER102b DNA MER1_type 147 341 0 197 279 114 0 chr9 36727316 36727395 -105544049 - L3 LINE CR1 -550 1027 940 285 305 42 0 chr9 36727517 36727612 -105543832 - MIR SINE MIR -56 206 108 2035 120 50 0 chr9 36727744 36728027 -105543417 + AluSx SINE Alu 1 297 -15 675 251 62 19 chr9 36728027 36728238 -105543206 + MIR SINE MIR 29 248 -14 2015 146 0 0 chr9 36728658 36728952 -105542492 + AluSx SINE Alu 1 294 -18 234 280 120 0 chr9 36728968 36729043 -105542401 - MIR SINE MIR -154 108 25 235 359 19 0 chr9 36729062 36729168 -105542276 - MIR SINE MIR -70 138 31 415 280 261 11 chr9 36729404 36730128 -105541316 + L2 LINE L2 1842 2746 -568 2510 94 0 0 chr9 36730199 36730507 -105540937 - AluSq SINE Alu -3 310 3 186 133 0 0 chr9 36731280 36731310 -105540134 + (TCTG)n Simple_repeat Simple_repeat 1 30 0 404 247 54 0 chr9 36731563 36731656 -105539788 + L2 LINE L2 3215 3312 -1 2385 88 3 3 chr9 36731867 36732172 -105539272 + AluSp SINE Alu 1 305 -8 1909 147 20 17 chr9 36732531 36732831 -105538613 + AluJb SINE Alu 1 301 -11 196 244 195 12 chr9 36732860 36732942 -105538502 + L2 LINE L2 3203 3299 -14 204 97 0 0 chr9 36733388 36733419 -105538025 + (CA)n Simple_repeat Simple_repeat 2 32 0 645 118 0 0 chr9 36733434 36733527 -105537917 - AluS SINE Alu -218 94 2 432 94 62 0 chr9 36733527 36733591 -105537853 + MSTB LTR MaLR 359 426 0 3081 209 63 20 chr9 36733593 36734422 -105537022 + L1MC4a LINE L1 6944 7807 -1 553 138 73 9 chr9 36734441 36734550 -105536894 + L1MA9 LINE L1 6162 6277 -35 31 68 0 0 chr9 36734565 36734624 -105536820 + AT_rich Low_complexity Low_complexity 1 59 0 270 283 85 9 chr9 36734768 36734874 -105536570 + MIR3 SINE MIR 95 208 0 2450 103 0 0 chr9 36735042 36735354 -105536090 - AluSx SINE Alu 0 312 1 2080 116 0 30 chr9 36736476 36736777 -105534667 - AluJo SINE Alu -20 292 1 2491 141 49 11 chr9 36736782 36737235 -105534209 - L1MB3 LINE L1 0 6183 5714 1255 154 50 141 chr9 36737896 36738293 -105533151 + MLT1A1 LTR MaLR 1 361 -4 262 262 12 60 chr9 36738646 36738730 -105532714 + L2 LINE L2 3193 3272 0 644 200 138 31 chr9 36738845 36739005 -105532439 + MER20 DNA MER1_type 40 216 -3 197 275 14 29 chr9 36739108 36739177 -105532267 - L2 LINE L2 0 3272 3205 1794 163 14 0 chr9 36739177 36739472 -105531972 - AluJo SINE Alu -13 299 1 2097 110 62 0 chr9 36739798 36740089 -105531355 + AluSp SINE Alu 1 309 -4 1160 130 25 0 chr9 36740882 36741044 -105530400 - AluSg/x SINE Alu -18 294 129 902 173 6 46 chr9 36741610 36741783 -105529661 + FRAM SINE Alu 1 166 0 238 242 45 15 chr9 36742644 36742710 -105528734 - L2 LINE L2 -6 3307 3240 256 324 97 14 chr9 36742978 36743123 -105528321 - MIR SINE MIR 0 262 106 238 302 0 0 chr9 36743230 36743293 -105528151 + MIR SINE MIR 68 130 -132 489 227 114 0 chr9 36743470 36743602 -105527842 + MIR SINE MIR 90 236 -26 21 0 0 0 chr9 36743772 36743793 -105527651 + AT_rich Low_complexity Low_complexity 1 21 0 1921 111 61 14 chr9 36744284 36744563 -105526881 + AluSg SINE Alu 2 293 -17 189 68 68 0 chr9 36745357 36745401 -105526043 + (TA)n Simple_repeat Simple_repeat 1 47 0 337 233 23 12 chr9 36745402 36745488 -105525956 - L1MC4 LINE L1 -1339 6703 6617 2175 117 3 3 chr9 36745884 36746182 -105525262 + AluSx SINE Alu 1 298 -14 323 183 0 14 chr9 36746183 36746254 -105525190 + MER53 DNA DNA 120 189 0 2593 68 0 0 chr9 36746295 36746602 -105524842 + AluY SINE Alu 1 307 -4 2272 121 0 3 chr9 36747133 36747446 -105523998 + AluSq SINE Alu 1 312 -1 2003 135 7 3 chr9 36747790 36748107 -105523337 + AluSx SINE Alu 1 318 0 1811 126 11 0 chr9 36748402 36748664 -105522780 + AluSx SINE Alu 23 287 -25 187 239 22 0 chr9 36748755 36748801 -105522643 - MIR3 SINE MIR -11 197 151 1929 142 0 10 chr9 36748944 36749239 -105522205 - AluSx SINE Alu -20 292 1 216 0 0 0 chr9 36749405 36749429 -105522015 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2073 154 0 0 chr9 36749459 36749764 -105521680 - AluSx SINE Alu -7 305 1 1165 127 0 0 chr9 36749804 36749961 -105521483 + FRAM SINE Alu 5 161 -15 2306 68 3 10 chr9 36750638 36750930 -105520514 - AluSc SINE Alu -19 290 1 429 197 0 0 chr9 36751257 36751333 -105520111 - L2 LINE L2 -10 3303 3228 21 0 0 0 chr9 36751421 36751442 -105520002 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 36752049 36752070 -105519374 + AT_rich Low_complexity Low_complexity 1 21 0 2339 101 0 3 chr9 36752389 36752754 -105518690 + AluSg SINE Alu 1 364 0 1603 192 3 31 chr9 36752774 36753092 -105518352 + AluJo SINE Alu 1 309 -3 1617 205 0 7 chr9 36753154 36753451 -105517993 + AluJb SINE Alu 1 295 -17 986 227 14 18 chr9 36753769 36753989 -105517455 - MER20 DNA MER1_type 0 219 1 2401 74 7 7 chr9 36754396 36754705 -105516739 + AluSc SINE Alu 1 309 0 2238 116 0 13 chr9 36755843 36756154 -105515290 + AluSg SINE Alu 1 307 -3 2107 130 3 0 chr9 36756420 36756712 -105514732 + AluSq SINE Alu 1 293 -20 876 121 0 16 chr9 36756783 36756907 -105514537 - FLAM_C SINE Alu -16 127 6 407 277 125 0 chr9 36757856 36758040 -105513404 - L1M4 LINE L1 -1890 4256 4050 44 46 0 0 chr9 36758079 36758144 -105513300 + AT_rich Low_complexity Low_complexity 1 65 0 1699 179 145 39 chr9 36758207 36758615 -105512829 - LTR32 LTR ERVL -7 464 14 302 213 64 85 chr9 36758708 36758742 -105512702 + L1ME LINE L1 5380 5413 -749 2043 141 3 0 chr9 36758742 36759039 -105512405 + AluSx SINE Alu 1 298 -14 302 213 64 85 chr9 36759039 36759145 -105512299 + L1ME LINE L1 5413 5517 -645 344 279 61 20 chr9 36759540 36759687 -105511757 - MIR SINE MIR -51 211 59 1606 177 45 10 chr9 36760680 36760968 -105510476 + AluJo SINE Alu 1 298 -14 6181 129 19 16 chr9 36761489 36762456 -105508988 - LTR5 LTR ERVK 0 969 1 24 32 0 0 chr9 36762844 36762875 -105508569 + AT_rich Low_complexity Low_complexity 1 31 0 303 296 15 12 chr9 36763207 36763362 -105508082 + L1M4 LINE L1 3767 3923 -2223 1566 160 31 35 chr9 36763427 36763714 -105507730 - AluJo SINE Alu -26 286 1 1998 153 3 6 chr9 36763787 36764100 -105507344 + AluSx SINE Alu 1 312 0 203 61 30 0 chr9 36764376 36764409 -105507035 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1878 125 84 0 chr9 36764531 36764818 -105506626 + AluSq SINE Alu 1 311 -2 2008 156 18 0 chr9 36764856 36765190 -105506254 - L1PB4 LINE L1 -2 6154 5815 266 189 27 0 chr9 36765194 36765268 -105506176 - L1PA16 LINE L1 -9 6156 6082 * 703 132 26 0 chr9 36765255 36765369 -105506075 - L1PB4 LINE L1 -327 5829 5713 404 158 44 70 chr9 36765377 36765491 -105505953 + L1PB4 LINE L1 5621 5731 -425 312 115 0 19 chr9 36765534 36765586 -105505858 + Alu SINE Alu 248 298 -2 1361 296 29 12 chr9 36765586 36766249 -105505195 + L1MC5 LINE L1 3294 3967 -2179 621 239 72 61 chr9 36766246 36766360 -105505084 + L1MEc LINE L1 1905 2016 -4380 * 2441 84 0 0 chr9 36766360 36766658 -105504786 + AluY SINE Alu 1 298 -13 258 32 0 0 chr9 36766658 36766689 -105504755 + (TA)n Simple_repeat Simple_repeat 2 32 0 621 239 72 61 chr9 36766689 36766726 -105504718 + L1MEc LINE L1 2016 2051 -4345 2199 97 10 13 chr9 36766726 36767024 -105504420 - AluSx SINE Alu -15 297 1 621 239 72 61 chr9 36767024 36767230 -105504214 + L1MEc LINE L1 2051 2268 -4128 1389 192 7 46 chr9 36767242 36767523 -105503921 + AluJo SINE Alu 13 282 -30 621 286 70 36 chr9 36767526 36767882 -105503562 + L1MEc LINE L1 2211 2578 -3637 629 200 19 76 chr9 36767900 36768110 -105503334 + L1MEc LINE L1 2757 2954 -3261 3151 189 66 14 chr9 36768166 36768866 -105502578 - L1MB4 LINE L1 -40 6140 5405 2277 281 43 14 chr9 36768878 36769866 -105501578 - L1M4 LINE L1 -2647 3499 2483 578 190 121 46 chr9 36769852 36770026 -105501418 - L1MA9 LINE L1 0 6312 6126 * 589 332 138 38 chr9 36771890 36772537 -105498907 + L1MC5 LINE L1 4715 7746 -215 396 341 203 27 chr9 36773312 36773972 -105497472 - L2 LINE L2 -399 2915 2140 1054 146 0 22 chr9 36774077 36774255 -105497189 - AluJb SINE Alu -1 311 138 270 336 23 0 chr9 36774273 36774404 -105497040 + (CCAA)n Simple_repeat Simple_repeat 3 136 0 316 303 183 52 chr9 36774404 36774430 -105497014 - L2 LINE L2 0 3272 3251 1905 140 0 20 chr9 36774430 36774730 -105496714 + AluSx SINE Alu 1 294 -18 316 303 183 52 chr9 36774730 36775248 -105496196 - L2 LINE L2 -21 3251 2243 534 263 146 69 chr9 36775288 36775617 -105495827 - L2 LINE L2 -74 3239 2857 1957 114 0 81 chr9 36775617 36775949 -105495495 + AluSx SINE Alu 1 305 -7 534 263 146 69 chr9 36775949 36776048 -105495396 - L2 LINE L2 -456 2857 2767 255 125 0 0 chr9 36776793 36776833 -105494611 + (CA)n Simple_repeat Simple_repeat 1 40 0 304 312 43 7 chr9 36777256 36777394 -105494050 - MIR3 SINE MIR -65 143 1 2093 102 14 7 chr9 36778844 36779137 -105492307 - AluSx SINE Alu -17 295 1 243 294 28 46 chr9 36779690 36779799 -105491645 - L2 LINE L2 -493 2821 2715 321 123 0 0 chr9 36780397 36780454 -105490990 - MER53 DNA DNA 0 189 133 459 0 0 0 chr9 36780535 36780586 -105490858 + (CA)n Simple_repeat Simple_repeat 2 52 0 2125 135 0 0 chr9 36780612 36780924 -105490520 + AluSx SINE Alu 1 312 0 1445 162 13 0 chr9 36780929 36781164 -105490280 - AluSq SINE Alu -7 306 69 859 199 131 5 chr9 36881325 36881531 -105389913 + MIR SINE MIR 12 243 -19 669 174 14 58 chr9 36881828 36881966 -105389478 + FLAM_A SINE Alu 1 132 -1 2370 77 40 0 chr9 36881967 36882265 -105389179 + AluY SINE Alu 1 310 -1 968 353 137 17 chr9 36882425 36883623 -105387821 - L2 LINE L2 -337 2977 1636 212 200 18 18 chr9 36883708 36883763 -105387681 + GA-rich Low_complexity Low_complexity 3 57 0 689 9 7 0 chr9 36884989 36885112 -105386332 + L1PA8 LINE L1 6053 6183 0 1232 191 4 13 chr9 36885499 36885729 -105385715 - AluJo SINE Alu 0 312 85 398 322 47 30 chr9 36887613 36887933 -105383511 + L1MC4a LINE L1 5730 6052 -118 2251 109 0 0 chr9 36887944 36888258 -105383186 + AluSx SINE Alu 1 314 0 2417 92 0 0 chr9 36890321 36890613 -105380831 - AluSg SINE Alu -13 297 6 231 238 16 71 chr9 36890884 36891010 -105380434 - L1MC5 LINE L1 -30 7931 7813 199 191 43 0 chr9 36891012 36891059 -105380385 - MIR SINE MIR -73 135 87 181 264 146 56 chr9 36892173 36892317 -105379127 + L2 LINE L2 2131 2287 -1027 2138 142 0 3 chr9 36894276 36894579 -105376865 + AluSx SINE Alu 1 302 -10 2011 144 3 3 chr9 36895216 36895515 -105375929 + AluSx SINE Alu 1 299 -13 917 276 4 8 chr9 36895585 36895824 -105375620 + MIR SINE MIR 1 238 -24 309 318 81 17 chr9 36895839 36896012 -105375432 + L2 LINE L2 2631 2814 -500 181 326 49 35 chr9 36896122 36896266 -105375178 - L2 LINE L2 -963 2351 2206 208 247 173 12 chr9 36896447 36896528 -105374916 - L2 LINE L2 -5 3267 3174 2445 84 3 13 chr9 36897044 36897355 -105374089 + AluSq SINE Alu 1 308 -5 2369 85 17 0 chr9 36898108 36898401 -105373043 + AluSc SINE Alu 1 298 -11 1719 144 115 0 chr9 36898825 36899095 -105372349 - AluJb SINE Alu -11 301 1 182 191 0 16 chr9 36899367 36899430 -105372014 + (CA)n Simple_repeat Simple_repeat 1 62 0 2562 232 101 23 chr9 36899462 36899936 -105371508 - HAL1 LINE L1 -1618 889 453 2342 87 0 35 chr9 36899936 36900246 -105371198 - AluSq SINE Alu -14 299 1 2562 232 101 23 chr9 36900246 36900594 -105370850 - HAL1 LINE L1 -2054 453 3 1267 126 11 0 chr9 36900723 36900898 -105370546 - AluJ SINE Alu -7 305 129 227 290 65 9 chr9 36901020 36901127 -105370317 + L2 LINE L2 3147 3259 -54 362 298 50 8 chr9 36901705 36901826 -105369618 - MIR3 SINE MIR -23 185 60 447 257 71 14 chr9 36903423 36903563 -105367881 - MIR3 SINE MIR -31 177 30 180 0 0 0 chr9 36904245 36904265 -105367179 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1723 159 39 4 chr9 36904267 36904525 -105366919 - AluJo SINE Alu -24 288 22 306 0 0 0 chr9 36904625 36904659 -105366785 + (TG)n Simple_repeat Simple_repeat 2 35 0 2090 256 89 2 chr9 36904721 36905326 -105366118 - MLT2F LTR ERVL 0 663 6 232 251 86 53 chr9 36905483 36905670 -105365774 - L1MEd LINE L1 -4444 1685 1493 1289 265 49 57 chr9 36905683 36906171 -105365273 - L1MEd LINE L1 -1045 1445 955 770 154 0 44 chr9 36906171 36906307 -105365137 - AluJ SINE Alu -172 130 1 1289 265 49 57 chr9 36906307 36906344 -105365100 - L1MEd LINE L1 -1535 955 919 2412 92 0 0 chr9 36906344 36906637 -105364807 - AluY SINE Alu -18 293 1 1289 265 49 57 chr9 36906637 36906837 -105364607 - L1MEd LINE L1 -1571 919 616 22 0 0 0 chr9 36907041 36907063 -105364381 + AT_rich Low_complexity Low_complexity 1 22 0 1938 166 10 13 chr9 36907136 36907449 -105363995 - AluJb SINE Alu 0 312 1 213 273 124 8 chr9 36907449 36907570 -105363874 + L2 LINE L2 1821 1955 -1359 576 175 19 0 chr9 36909294 36909397 -105362047 + MER81 DNA DNA 2 106 -8 255 213 16 47 chr9 36910239 36910366 -105361078 + (CAGAGA)n Simple_repeat Simple_repeat 3 125 0 362 269 15 23 chr9 36910459 36910589 -105360855 + (CAGAGA)n Simple_repeat Simple_repeat 2 130 0 2335 81 6 40 chr9 36910597 36910920 -105360524 + AluSx SINE Alu 1 312 0 383 277 191 11 chr9 36911063 36911258 -105360186 + MIR SINE MIR 35 262 0 244 323 71 24 chr9 36911244 36911498 -105359946 - L2 LINE L2 -1243 2071 1806 * 436 301 44 89 chr9 36911889 36912082 -105359362 + L2 LINE L2 1626 1826 -1488 1974 152 0 26 chr9 36912082 36912392 -105359052 - AluJo SINE Alu -10 302 1 436 301 44 89 chr9 36912392 36912723 -105358721 + L2 LINE L2 1826 2126 -1188 273 197 0 0 chr9 36913042 36913108 -105358336 + GA-rich Low_complexity Low_complexity 2 67 0 2130 118 7 3 chr9 36913498 36913817 -105357627 + AluSx SINE Alu 1 312 0 703 258 68 95 chr9 36914592 36914992 -105356452 + MLT1I LTR MaLR 21 409 0 544 291 74 0 chr9 36915185 36915374 -105356070 + LTR67 LTR ERVL 353 555 -2 1984 139 30 3 chr9 36915452 36915753 -105355691 + AluSg SINE Alu 1 309 -1 35483 52 3 7 chr9 36915755 36920384 -105351060 + L1P LINE L1 13 4626 -1520 2423 55 41 7 chr9 36923512 36923805 -105347639 + AluY SINE Alu 1 303 -8 308 174 105 23 chr9 36923837 36923923 -105347521 + L1MC5 LINE L1 7611 7703 -258 24 0 0 0 chr9 36924025 36924049 -105347395 + AT_rich Low_complexity Low_complexity 1 24 0 281 238 95 40 chr9 36924050 36924176 -105347268 + L1MC5 LINE L1 7729 7861 -100 562 310 13 77 chr9 36925834 36926134 -105345310 + L2 LINE L2 2992 3272 0 183 362 24 31 chr9 36926813 36926940 -105344504 + MIR SINE MIR 51 176 -86 2321 112 7 0 chr9 36926991 36927287 -105344157 + AluSx SINE Alu 1 298 -14 732 289 125 42 chr9 36927714 36928115 -105343329 - L3 LINE CR1 -243 1334 901 444 328 114 22 chr9 36928386 36928657 -105342787 + L3 LINE CR1 931 1226 -351 1965 164 3 7 chr9 36928967 36929272 -105342172 - AluJo SINE Alu -8 304 1 386 313 20 35 chr9 36929516 36929714 -105341730 - MER117 DNA MER1_type -2 195 1 1547 93 4 4 chr9 36929986 36930211 -105341233 + L1PB2 LINE L1 5927 6151 0 1488 153 0 13 chr9 36930258 36930486 -105340958 + AluJb SINE Alu 1 225 -87 634 194 90 0 chr9 36930939 36931073 -105340371 + MER103 DNA DNA 2 147 -19 2100 126 14 3 chr9 36931236 36931530 -105339914 + AluJb SINE Alu 1 297 -15 2268 97 3 0 chr9 36931632 36931922 -105339522 - AluSg1 SINE Alu -18 291 1 208 359 119 9 chr9 36933599 36933919 -105337525 + L2 LINE L2 2411 2765 -549 2345 103 0 3 chr9 36935362 36935663 -105335781 + AluSc SINE Alu 1 300 -9 23 0 0 0 chr9 36935993 36936016 -105335428 + AT_rich Low_complexity Low_complexity 1 23 0 414 256 26 43 chr9 36936273 36936390 -105335054 + L2 LINE L2 3154 3268 -4 1412 154 5 5 chr9 36936672 36936892 -105334552 - AluJb SINE Alu -11 301 82 2213 133 0 0 chr9 36937117 36937417 -105334027 + AluSx SINE Alu 1 300 -12 717 114 9 0 chr9 36939023 36939128 -105332316 - AluSq/x SINE Alu -205 107 2 184 308 108 0 chr9 36939134 36939199 -105332245 + L2 LINE L2 2213 2284 -1030 573 271 69 45 chr9 36939230 36939309 -105332135 - MIR SINE MIR -2 260 184 1961 139 30 0 chr9 36939309 36939610 -105331834 + AluJb SINE Alu 1 310 -2 573 271 69 45 chr9 36939610 36939689 -105331755 - MIR SINE MIR -78 184 108 2089 126 13 3 chr9 36939689 36939990 -105331454 + AluSx SINE Alu 1 304 -8 573 271 69 45 chr9 36939990 36940077 -105331367 - MIR SINE MIR -154 108 8 381 176 0 0 chr9 36940863 36940931 -105330513 + L1MB3 LINE L1 6077 6144 -39 871 113 0 23 chr9 36940931 36941064 -105330380 + AluJ SINE Alu 1 130 -172 1196 96 0 42 chr9 36941066 36941089 -105330355 + AluJ SINE Alu 136 158 -154 3560 94 28 20 chr9 36941089 36941633 -105329811 - LTR14 LTR ERVK 0 548 1 1196 96 0 42 chr9 36941633 36941776 -105329668 + AluJ SINE Alu 158 295 -17 319 314 12 12 chr9 36942393 36942565 -105328879 + (CA)n Simple_repeat Simple_repeat 1 172 0 195 42 0 0 chr9 36942618 36942642 -105328802 + (CA)n Simple_repeat Simple_repeat 1 24 0 325 102 0 0 chr9 36943176 36943225 -105328219 - MLT1D LTR MaLR -3 502 454 1237 92 69 0 chr9 36943226 36943399 -105328045 + AluSg/x SINE Alu 122 306 -4 1941 146 82 31 chr9 36943401 36943825 -105327619 - MLT1D LTR MaLR -58 447 2 224 286 0 44 chr9 36943872 36943963 -105327481 - MIR SINE MIR -110 152 66 633 251 73 81 chr9 36943978 36944182 -105327262 - HAL1b LINE L1 -44 1304 1100 2615 55 0 3 chr9 36944182 36944489 -105326955 + AluY SINE Alu 1 306 -5 633 251 73 81 chr9 36944489 36944649 -105326795 - HAL1b LINE L1 -248 1100 942 2153 136 7 0 chr9 36944649 36944959 -105326485 + AluJb SINE Alu 1 312 0 633 251 73 81 chr9 36944959 36945075 -105326369 - HAL1b LINE L1 -406 942 827 2160 85 88 20 chr9 36945087 36945441 -105326003 - Tigger2 DNA MER2_type -61 2657 2280 412 123 0 0 chr9 36945455 36945512 -105325932 + MER8 DNA MER2_type 183 239 0 1352 258 110 58 chr9 36945513 36945940 -105325504 - HAL1b LINE L1 -575 1585 1182 796 150 0 8 chr9 36945940 36946073 -105325371 - FLAM_C SINE Alu -1 132 1 1352 258 110 58 chr9 36946073 36946365 -105325079 - HAL1b LINE L1 -978 1182 70 576 175 19 0 chr9 36947878 36947981 -105323463 + MER81 DNA DNA 2 106 -8 255 213 16 47 chr9 36948823 36948950 -105322494 + (CAGAGA)n Simple_repeat Simple_repeat 3 125 0 370 265 27 27 chr9 36949043 36949181 -105322263 + (CAGAGA)n Simple_repeat Simple_repeat 2 142 -6 2416 87 7 0 chr9 36949181 36949490 -105321954 + AluSx SINE Alu 1 311 -1 370 265 27 27 chr9 36949490 36949498 -105321946 + (CAGAGA)n Simple_repeat Simple_repeat 141 148 0 22 35 0 0 chr9 36952412 36952441 -105319003 + GC_rich Low_complexity Low_complexity 1 29 0 183 311 81 0 chr9 36954940 36955014 -105316430 - L2 LINE L2 -304 3009 2930 265 246 66 0 chr9 36955441 36955502 -105315942 - L2 LINE L2 -6 3266 3202 23 54 0 0 chr9 36956012 36956049 -105315395 + GC_rich Low_complexity Low_complexity 1 37 0 768 203 136 25 chr9 36957927 36958163 -105313281 + MIR SINE MIR 1 262 0 2105 134 0 13 chr9 36958395 36958693 -105312751 + AluJb SINE Alu 1 294 -18 2119 115 28 3 chr9 36958695 36958982 -105312462 + AluSx SINE Alu 1 294 -18 2444 87 0 0 chr9 36958984 36959283 -105312161 + AluSg SINE Alu 1 299 -11 1318 117 5 25 chr9 36959283 36959479 -105311965 + AluSg SINE Alu 1 192 -118 21 0 0 0 chr9 36959603 36959624 -105311820 + AT_rich Low_complexity Low_complexity 1 21 0 244 323 71 24 chr9 36960094 36960348 -105311096 + L2 LINE L2 1806 2071 -1243 * 383 277 191 11 chr9 36960334 36960529 -105310915 - MIR SINE MIR 0 262 35 2259 111 0 40 chr9 36960672 36960997 -105310447 - AluSx SINE Alu 0 312 1 746 270 93 0 chr9 36961006 36961306 -105310138 - L1ME4a LINE L1 -273 5848 5521 1496 161 0 21 chr9 36962438 36962674 -105308770 + AluSx SINE Alu 1 231 -81 1209 179 27 5 chr9 36962854 36963077 -105308367 + AluJo SINE Alu 85 312 0 756 152 0 0 chr9 36963078 36963210 -105308234 + GA-rich Low_complexity Low_complexity 2 133 0 1680 127 107 4 chr9 36963357 36963609 -105307835 + AluSx SINE Alu 1 278 -34 1976 147 0 18 chr9 36964834 36965152 -105306292 + AluSx SINE Alu 1 313 0 264 109 0 0 chr9 36965160 36965206 -105306238 + L1MB3 LINE L1 6131 6176 -7 1860 153 0 18 chr9 36966739 36967020 -105304424 + AluJb SINE Alu 1 276 -36 312 27 0 0 chr9 36967020 36967057 -105304387 + (TG)n Simple_repeat Simple_repeat 1 37 0 * 324 0 0 0 chr9 36967056 36967092 -105304352 + (GA)n Simple_repeat Simple_repeat 1 36 0 232 259 19 0 chr9 36967568 36967622 -105303822 - MER5A DNA MER1_type -125 64 10 353 339 88 6 chr9 36967886 36968057 -105303387 - MIR SINE MIR -5 257 73 361 277 85 7 chr9 36968113 36968254 -105303190 + MARNA DNA Mariner 25 176 -410 463 342 66 57 chr9 36968491 36968554 -105302890 - L2 LINE L2 -17 3255 3194 1736 141 56 11 chr9 36968554 36968823 -105302621 + AluJb SINE Alu 1 281 -31 463 342 66 57 chr9 36968823 36969628 -105301816 - L2 LINE L2 -78 3194 2372 1861 155 17 3 chr9 36970483 36970773 -105300671 - AluJb SINE Alu -18 294 1 2050 94 4 0 chr9 36970900 36971193 -105300251 + AluSq SINE Alu 26 319 0 181 264 83 0 chr9 36972693 36972765 -105298679 + L2 LINE L2 2825 2902 -411 1365 122 19 42 chr9 36972856 36973069 -105298375 - AluJb SINE Alu -20 292 85 918 146 0 0 chr9 36975899 36976036 -105295408 + FLAM_C SINE Alu 5 141 -2 2273 73 0 0 chr9 36976043 36976315 -105295129 + AluY SINE Alu 40 311 0 952 191 19 0 chr9 36976328 36976518 -105294926 + AluJb SINE Alu 118 310 0 224 217 0 0 chr9 36977005 36977051 -105294393 + (CA)n Simple_repeat Simple_repeat 1 46 0 669 200 0 22 chr9 36977244 36977379 -105294065 + FLAM_A SINE Alu 1 132 -1 250 264 104 0 chr9 36977394 36977500 -105293944 - L1ME4a LINE L1 -16 6105 5989 429 249 132 7 chr9 36977572 36977734 -105293710 + MIR SINE MIR 2 193 -15 347 283 177 30 chr9 36977976 36978372 -105293072 + L2 LINE L2 1859 2312 -1002 685 206 0 0 chr9 36978522 36978648 -105292796 - FLAM_C SINE Alu -17 126 1 328 183 0 14 chr9 36978648 36978719 -105292725 - L1MD3 LINE L1 -17 7978 7909 980 135 45 19 chr9 36978719 36978957 -105292487 - L1MD3 LINE L1 -688 7104 6845 183 391 35 30 chr9 36979041 36979238 -105292206 + L2 LINE L2 2571 2768 -546 2836 32 0 0 chr9 36979571 36979881 -105291563 + AluY SINE Alu 1 310 -1 217 273 153 30 chr9 36980052 36980219 -105291225 - MIR SINE MIR -46 216 23 2128 130 0 3 chr9 36980463 36980771 -105290673 - AluSx SINE Alu 0 307 1 343 250 15 37 chr9 36981327 36981463 -105289981 - L1MC4a LINE L1 -1941 5867 5735 2138 131 3 0 chr9 36981464 36981755 -105289689 - AluSx SINE Alu -20 292 1 36 77 0 0 chr9 36981812 36981890 -105289554 + AT_rich Low_complexity Low_complexity 1 78 0 2008 127 17 27 chr9 36981896 36982196 -105289248 - AluJo SINE Alu -15 297 1 399 182 81 61 chr9 36982218 36982366 -105289078 - L1MC4a LINE L1 -437 5684 5534 352 318 125 5 chr9 36982371 36982563 -105288881 + MIR SINE MIR 14 228 -34 393 255 245 20 chr9 36983195 36983391 -105288053 + MIR SINE MIR 2 241 -21 5032 119 109 97 chr9 36983393 36984930 -105286514 + pTR5 LTR ERV1 145 2438 0 192 40 0 0 chr9 36985003 36985028 -105286416 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 479 323 40 21 chr9 36985204 36985525 -105285919 - L2 LINE L2 -216 3056 2739 2378 60 3 30 chr9 36986219 36986520 -105284924 + AluY SINE Alu 1 293 -18 683 210 253 0 chr9 36986524 36986753 -105284691 - L1ME LINE L1 -5069 1136 850 589 329 9 9 chr9 36986775 36987006 -105284438 - L1ME LINE L1 -6121 275 45 1862 144 48 3 chr9 36987052 36987225 -105284219 - AluJo SINE Alu -8 304 111 396 40 0 0 chr9 36987225 36987275 -105284169 + (TG)n Simple_repeat Simple_repeat 2 51 0 1862 144 48 3 chr9 36987275 36987392 -105284052 - AluJo SINE Alu -201 111 1 200 219 0 0 chr9 36988556 36988597 -105282847 + (TTCA)n Simple_repeat Simple_repeat 3 43 0 273 325 106 0 chr9 36988597 36988720 -105282724 - L2 LINE L2 0 3272 3137 314 291 31 8 chr9 36989384 36989511 -105281933 + L2 LINE L2 1577 1706 -1608 643 346 47 7 chr9 36989527 36989825 -105281619 + L2 LINE L2 1821 2130 -1184 524 289 38 51 chr9 36989918 36990153 -105281291 - L2 LINE L2 -2 3311 3080 801 316 23 26 chr9 36990310 36990652 -105280792 - L2 LINE L2 -454 2860 2520 1254 225 74 74 chr9 36991400 36991885 -105279559 + L2 LINE L2 2825 3309 -4 371 314 32 0 chr9 36992139 36992263 -105279181 - L2 LINE L2 0 3272 3145 782 216 39 43 chr9 36993179 36993411 -105278033 + L1ME1 LINE L1 5930 6160 -6 2208 107 13 10 chr9 36993436 36993567 -105277877 + AluSq SINE Alu 5 134 -179 2361 71 0 14 chr9 36993567 36993883 -105277561 + AluY SINE Alu 1 311 0 2208 107 13 10 chr9 36993883 36994059 -105277385 + AluSq SINE Alu 134 313 0 1976 167 0 0 chr9 36994963 36995275 -105276169 + AluSx SINE Alu 1 312 0 20392 47 9 0 chr9 36996691 37000144 -105271300 + L1PA5 LINE L1 2689 6149 -5 195 69 0 0 chr9 37001271 37001300 -105270144 + (GGA)n Simple_repeat Simple_repeat 3 31 0 231 329 66 13 chr9 37001449 37001601 -105269843 + MLT1K LTR MaLR 381 540 -48 316 277 10 0 chr9 37001603 37001704 -105269740 + L2 LINE L2 2170 2271 -1043 213 329 160 31 chr9 37001712 37002062 -105269382 + L2 LINE L2 2406 2800 -514 525 175 97 0 chr9 37002428 37002542 -105268902 - MIR SINE MIR -84 178 54 296 274 126 15 chr9 37002557 37002692 -105268752 - L2 LINE L2 -1015 2299 2150 294 173 0 0 chr9 37003521 37003596 -105267848 + (CCGAG)n Simple_repeat Simple_repeat 5 79 0 201 217 0 33 chr9 37004035 37004095 -105267349 + (CAGAGA)n Simple_repeat Simple_repeat 2 59 0 290 271 8 8 chr9 37004168 37004290 -105267154 + (CAGAGA)n Simple_repeat Simple_repeat 4 125 0 539 176 29 0 chr9 37007313 37007415 -105264029 + MIR SINE MIR 33 137 -71 324 254 97 74 chr9 37009019 37009236 -105262208 + L2 LINE L2 2271 2492 -822 2226 118 6 16 chr9 37009710 37010025 -105261419 + AluSx SINE Alu 1 312 0 560 273 108 26 chr9 37010025 37010219 -105261225 - MIR SINE MIR -2 260 51 194 234 0 21 chr9 37011875 37011922 -105259522 + L2 LINE L2 3005 3050 -222 434 260 79 0 chr9 37013548 37013675 -105257769 + MIR SINE MIR 121 257 -5 223 327 28 9 chr9 37015204 37015311 -105256133 + L2 LINE L2 2224 2332 -982 655 24 0 0 chr9 37015336 37015420 -105256024 - AluYb8 SINE Alu 0 318 235 278 299 43 34 chr9 37015573 37015690 -105255754 + L2 LINE L2 2635 2752 -562 185 323 10 10 chr9 37015988 37016084 -105255360 + L2 LINE L2 2963 3058 -214 208 306 41 0 chr9 37016236 37016334 -105255110 + (TGAG)n Simple_repeat Simple_repeat 2 103 0 2339 157 18 32 chr9 37017624 37018064 -105253380 + Tigger2a DNA MER2_type 1 434 0 2616 144 49 26 chr9 37019698 37020192 -105251252 + MLT1D LTR MaLR 1 505 0 217 254 88 79 chr9 37022348 37022462 -105248982 - MIR SINE MIR -80 182 68 265 335 111 6 chr9 37023536 37023875 -105247569 + L2 LINE L2 2557 2998 -274 278 368 132 0 chr9 37023924 37024060 -105247384 + L2 LINE L2 3119 3272 0 654 198 123 21 chr9 37024591 37024778 -105246666 + MIR SINE MIR 57 262 0 420 302 141 38 chr9 37025046 37025414 -105246030 + L2 LINE L2 2351 2756 -558 566 328 93 41 chr9 37025499 37025844 -105245600 + L2 LINE L2 2909 3271 -1 822 268 28 40 chr9 37026812 37027062 -105244382 + MIR SINE MIR 8 254 -8 255 262 217 51 chr9 37027650 37027825 -105243619 + MIR3 SINE MIR 13 203 -59 310 263 40 72 chr9 37028572 37028724 -105242720 - MIR3 SINE MIR -32 176 30 575 299 23 32 chr9 37028997 37029214 -105242230 + MIR SINE MIR 12 226 -36 269 294 117 12 chr9 37029515 37029678 -105241766 - L3 LINE CR1 -214 1363 1184 500 259 184 33 chr9 37029694 37029906 -105241538 - MIR SINE MIR 0 262 19 245 280 97 11 chr9 37029974 37030067 -105241377 - L3 LINE CR1 -508 1069 969 1958 147 0 3 chr9 37032444 37032729 -105238715 + AluJb SINE Alu 1 284 -28 378 0 0 0 chr9 37032729 37032771 -105238673 + (TA)n Simple_repeat Simple_repeat 2 43 0 376 341 60 11 chr9 37033079 37033261 -105238183 - MIR SINE MIR -50 212 22 2265 96 0 14 chr9 37035404 37035697 -105235747 - AluSc SINE Alu -20 289 1 331 319 35 43 chr9 37036355 37036496 -105234948 - MIR3 SINE MIR -23 185 46 387 268 24 24 chr9 37036502 37036625 -105234819 - L2 LINE L2 -1 3312 3190 718 295 60 13 chr9 37036935 37037169 -105234275 + MIR SINE MIR 8 252 -10 2450 66 0 10 chr9 37037779 37038080 -105233364 + AluY SINE Alu 1 298 -13 2791 164 20 2 chr9 37038163 37038657 -105232787 + L1MB8 LINE L1 5676 6178 0 30 59 0 0 chr9 37038771 37038822 -105232622 + AT_rich Low_complexity Low_complexity 1 51 0 327 300 86 38 chr9 37038839 37039049 -105232395 + MIR SINE MIR 31 250 -12 869 223 98 101 chr9 37040711 37041019 -105230425 + L1ME4a LINE L1 5386 5693 -428 2224 138 3 0 chr9 37041019 37041330 -105230114 - AluSx SINE Alu 0 312 1 869 223 98 101 chr9 37041330 37041703 -105229741 + L1ME4a LINE L1 5693 6065 -56 6573 118 84 161 chr9 37041922 37043758 -105227686 + pTR5 LTR ERV1 743 2438 0 2166 94 10 14 chr9 37044017 37044305 -105227139 - AluSq SINE Alu -26 287 1 2085 113 7 10 chr9 37044307 37044600 -105226844 - AluSx SINE Alu -17 295 4 183 308 121 33 chr9 37044606 37044697 -105226747 - L2 LINE L2 -240 3032 2934 2065 122 41 0 chr9 37044699 37044993 -105226451 + AluSx SINE Alu 1 306 -6 364 253 77 100 chr9 37045173 37045343 -105226101 + MIR3 SINE MIR 25 190 -18 285 308 0 19 chr9 37046534 37046641 -105224803 - 7SK RNA RNA -86 107 3 231 242 167 0 chr9 37046676 37046742 -105224702 + L2 LINE L2 3156 3232 -40 1700 132 0 0 chr9 37047079 37047314 -105224130 + AluSx SINE Alu 1 235 -77 216 0 0 0 chr9 37047316 37047340 -105224104 + (A)n Simple_repeat Simple_repeat 1 24 0 189 0 0 0 chr9 37047340 37047361 -105224083 + (GA)n Simple_repeat Simple_repeat 2 22 0 717 253 6 0 chr9 37047765 37047923 -105223521 - MIR SINE MIR -16 246 88 1426 170 0 12 chr9 37048017 37048258 -105223186 + AluJo SINE Alu 71 308 -4 339 338 45 0 chr9 37049062 37049195 -105222249 - MIR SINE MIR -5 257 119 24 0 0 0 chr9 37049415 37049439 -105222005 + AT_rich Low_complexity Low_complexity 1 24 0 765 243 4 98 chr9 37049471 37049726 -105221718 + MIR SINE MIR 23 253 -9 265 206 15 73 chr9 37050148 37050216 -105221228 + L2 LINE L2 3204 3267 -5 393 291 17 101 chr9 37050242 37050400 -105221044 + L1MC4a LINE L1 5506 5676 -2132 2560 84 0 0 chr9 37050400 37050709 -105220735 + AluSg SINE Alu 2 310 0 393 291 17 101 chr9 37050709 37050729 -105220715 + L1MC4a LINE L1 5676 5696 -2112 2107 142 0 6 chr9 37050729 37051040 -105220404 + AluJb SINE Alu 1 309 -3 393 291 17 101 chr9 37051040 37051207 -105220237 + L1MC4a LINE L1 5696 5823 -1985 871 73 78 92 chr9 37051214 37051238 -105220206 + L1MA8 LINE L1 6084 6107 -184 1799 165 3 11 chr9 37051238 37051523 -105219921 + AluJo SINE Alu 1 283 -29 333 93 0 0 chr9 37051523 37051577 -105219867 + (CCAA)n Simple_repeat Simple_repeat 2 55 0 871 73 78 92 chr9 37051577 37051674 -105219770 + L1MA8 LINE L1 6106 6205 -86 2172 109 3 0 chr9 37051674 37051992 -105219452 + AluSx SINE Alu 1 319 0 871 73 78 92 chr9 37051992 37052073 -105219371 + L1MA8 LINE L1 6205 6286 -5 301 256 12 12 chr9 37052098 37052184 -105219260 + L1MC4a LINE L1 5813 5898 -1910 1847 183 3 0 chr9 37052351 37052646 -105218798 - AluJb SINE Alu -16 296 1 642 322 35 4 chr9 37052872 37053102 -105218342 + MIR SINE MIR 8 244 -18 346 151 9 85 chr9 37053380 37053486 -105217958 - L1MEc LINE L1 -2200 4015 3918 2029 121 7 7 chr9 37053487 37053776 -105217668 - AluSg SINE Alu -19 291 3 1938 141 9 52 chr9 37053795 37054121 -105217323 - AluJb SINE Alu 0 312 1 1731 240 90 56 chr9 37054125 37055378 -105216066 - L1MEc LINE L1 -3113 3102 1841 1909 169 3 10 chr9 37055386 37055700 -105215744 + AluSx SINE Alu 1 312 0 889 121 23 30 chr9 37055721 37055853 -105215591 + AluJo SINE Alu 23 153 -159 217 296 9 0 chr9 37056088 37056196 -105215248 + (CA)n Simple_repeat Simple_repeat 1 109 0 21 0 0 0 chr9 37057324 37057345 -105214099 + AT_rich Low_complexity Low_complexity 1 21 0 371 259 35 12 chr9 37057812 37057897 -105213547 - MIR3 SINE MIR -50 158 72 328 198 210 0 chr9 37057948 37058029 -105213415 - L2 LINE L2 -6 3307 3210 1670 200 128 18 chr9 37058030 37058476 -105212968 + L1ME3 LINE L1 5502 5996 -166 1336 177 99 31 chr9 37058488 37058810 -105212634 + MER2 DNA MER2_type 1 344 0 2313 77 0 21 chr9 37058838 37059144 -105212300 + AluY SINE Alu 1 300 0 201 214 0 0 chr9 37059632 37059674 -105211770 + L2 LINE L2 3263 3304 -9 610 231 99 28 chr9 37060030 37060212 -105211232 + MIR SINE MIR 50 244 -18 202 290 52 32 chr9 37060217 37060372 -105211072 + (TCTCTG)n Simple_repeat Simple_repeat 4 161 0 240 184 40 13 chr9 37060844 37060920 -105210524 + (TCTCTG)n Simple_repeat Simple_repeat 1 78 0 321 258 5 43 chr9 37061733 37061919 -105209525 + (CAGAGA)n Simple_repeat Simple_repeat 2 180 0 385 323 6 0 chr9 37061979 37062137 -105209307 + GA-rich Low_complexity Low_complexity 2 160 0 425 281 112 36 chr9 37063012 37063290 -105208154 + L2 LINE L2 2606 2904 -410 2305 91 3 3 chr9 37063487 37063784 -105207660 - AluSx SINE Alu -15 297 1 182 255 0 0 chr9 37064165 37064212 -105207232 - L2 LINE L2 -308 2964 2918 2404 93 6 3 chr9 37064331 37064643 -105206801 + AluSp SINE Alu 1 313 0 1116 238 75 39 chr9 37064794 37065155 -105206289 - L2 LINE L2 0 3313 2940 1652 198 51 70 chr9 37065607 37066077 -105205367 + MLT1C LTR MaLR 2 462 -5 861 307 132 35 chr9 37066104 37066823 -105204621 + L2 LINE L2 905 1714 -1600 195 69 0 0 chr9 37066823 37066852 -105204592 + (CAA)n Simple_repeat Simple_repeat 2 30 0 861 307 132 35 chr9 37066852 37066952 -105204492 + L2 LINE L2 1714 1803 -1511 2407 69 3 0 chr9 37068114 37068403 -105203041 + AluSp SINE Alu 1 290 -23 689 290 70 19 chr9 37072368 37072682 -105198762 + L2 LINE L2 2018 2347 -967 984 264 90 42 chr9 37072730 37073131 -105198313 + LTR16C LTR ERVL 72 491 0 257 228 191 62 chr9 37073202 37073443 -105198001 + L2 LINE L2 2463 2734 -580 290 313 17 28 chr9 37074960 37075136 -105196308 + GA-rich Low_complexity Low_complexity 5 178 0 283 260 0 0 chr9 37076251 37076351 -105195093 + (CAGA)n Simple_repeat Simple_repeat 1 100 0 298 265 31 20 chr9 37076745 37076843 -105194601 - MIR SINE MIR -139 123 25 258 32 0 0 chr9 37077178 37077209 -105194235 + (CA)n Simple_repeat Simple_repeat 1 31 0 218 264 35 40 chr9 37077396 37077570 -105193874 + GA-rich Low_complexity Low_complexity 2 174 0 226 208 13 65 chr9 37079489 37079566 -105191878 + (CAGAGA)n Simple_repeat Simple_repeat 2 74 0 240 111 0 0 chr9 37081279 37081324 -105190120 + (CCCA)n Simple_repeat Simple_repeat 3 47 0 202 71 24 24 chr9 37083543 37083585 -105187859 + (CGGG)n Simple_repeat Simple_repeat 3 44 0 23 54 0 0 chr9 37083774 37083811 -105187633 + GC_rich Low_complexity Low_complexity 1 37 0 198 143 0 0 chr9 37083884 37083919 -105187525 + (CGAG)n Simple_repeat Simple_repeat 4 38 0 229 268 13 36 chr9 37085022 37085239 -105186205 + GA-rich Low_complexity Low_complexity 1 211 0 241 284 30 0 chr9 37085627 37085694 -105185750 - L3b LINE CR1 -191 1392 1324 743 309 45 4 chr9 37087224 37087467 -105183977 - MIR SINE MIR -1 261 9 451 256 24 72 chr9 37087509 37087613 -105183831 - MIR SINE MIR 0 262 155 1904 157 0 10 chr9 37087613 37087919 -105183525 + AluSx SINE Alu 1 303 -9 451 256 24 72 chr9 37087919 37088088 -105183356 - MIR SINE MIR -107 155 7 279 288 14 0 chr9 37090648 37090721 -105180723 - L2 LINE L2 -4 3268 3195 227 250 25 25 chr9 37090794 37090874 -105180570 - L2 LINE L2 -38 3234 3155 243 61 0 0 chr9 37095325 37095358 -105176086 + (CCG)n Simple_repeat Simple_repeat 2 34 0 183 139 0 0 chr9 37095407 37095443 -105176001 + (TCCC)n Simple_repeat Simple_repeat 3 38 0 23 33 0 0 chr9 37095453 37095483 -105175961 + GC_rich Low_complexity Low_complexity 1 30 0 28 79 0 0 chr9 37095511 37095574 -105175870 + GC_rich Low_complexity Low_complexity 1 63 0 192 40 0 0 chr9 37095808 37095833 -105175611 + (CA)n Simple_repeat Simple_repeat 1 25 0 1802 171 3 19 chr9 37149923 37150233 -105121211 - AluJb SINE Alu -7 305 1 2889 195 76 48 chr9 37150239 37150250 -105121194 - L1M4c LINE L1 -4116 2530 2521 918 145 0 0 chr9 37150250 37150381 -105121063 - FLAM_C SINE Alu -2 131 1 2889 195 76 48 chr9 37150381 37150702 -105120742 - L1M4c LINE L1 -4125 2521 2210 1915 142 48 0 chr9 37150702 37150991 -105120453 - AluJo SINE Alu -8 304 2 2889 195 76 48 chr9 37150991 37151002 -105120442 - L1M4c LINE L1 -4436 2210 2201 2314 113 0 0 chr9 37151002 37151302 -105120142 - AluSx SINE Alu -12 300 1 2889 195 76 48 chr9 37151302 37151402 -105120042 - L1M4c LINE L1 -4445 2201 2105 207 0 0 0 chr9 37151402 37151425 -105120019 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2889 195 76 48 chr9 37151425 37152200 -105119244 - L1M4c LINE L1 -4541 2105 1185 1067 217 31 25 chr9 37152323 37152645 -105118799 - L1M4c LINE L1 -5339 1203 880 246 314 113 44 chr9 37152799 37153092 -105118352 - L1M4c LINE L1 -6040 606 294 365 315 62 22 chr9 37153898 37154076 -105117368 - MER5A DNA MER1_type -3 186 2 183 80 0 0 chr9 37155709 37155734 -105115710 + (TTAGGG)n Simple_repeat Simple_repeat 4 28 0 1689 163 0 63 chr9 37155989 37156368 -105115076 - AluJb SINE Alu 0 312 1 216 183 0 67 chr9 37156681 37156741 -105114703 + (TTGGGG)n Simple_repeat Simple_repeat 5 60 0 2107 130 0 23 chr9 37158491 37158798 -105112646 - AluSx SINE Alu -12 300 1 2617 21 0 3 chr9 37159622 37159936 -105111508 + AluYb8 SINE Alu 1 313 0 1807 278 90 30 chr9 37160536 37160859 -105110585 + L2 LINE L2 1479 1781 -1533 306 0 0 0 chr9 37160859 37160893 -105110551 + (TC)n Simple_repeat Simple_repeat 1 34 0 2142 108 14 0 chr9 37160893 37161170 -105110274 - AluSq SINE Alu -32 281 1 1807 278 90 30 chr9 37161170 37161533 -105109911 + L2 LINE L2 1780 2207 -1107 727 263 147 71 chr9 37161579 37161960 -105109484 - L2 LINE L2 -616 2698 2289 334 298 114 9 chr9 37161973 37162087 -105109357 + L2 LINE L2 3138 3263 -9 215 278 69 28 chr9 37162226 37162298 -105109146 - L2 LINE L2 -8 3305 3231 278 295 93 43 chr9 37167708 37167847 -105103597 - MIR SINE MIR -60 202 60 6788 96 13 42 chr9 37170595 37171305 -105100139 - L1MA3 LINE L1 0 6305 5646 1893 138 3 46 chr9 37171305 37171609 -105099835 - AluJb SINE Alu -8 304 14 6788 96 13 42 chr9 37171609 37172190 -105099254 - L1MA3 LINE L1 -659 5646 5050 546 325 72 11 chr9 37172329 37172705 -105098739 - L1MC/D LINE L1 -1987 5821 5423 1655 177 3 17 chr9 37172964 37173263 -105098181 - AluJo SINE Alu -17 295 1 863 306 55 39 chr9 37173525 37174032 -105097412 + L1MCc LINE L1 73 587 -5836 1240 210 207 7 chr9 37174178 37174583 -105096861 + L1MCc LINE L1 827 1312 -5111 2490 90 0 3 chr9 37174584 37174895 -105096549 - AluSg SINE Alu 0 310 1 242 161 0 36 chr9 37175069 37175125 -105096319 + Alu SINE Alu 248 301 0 1629 256 45 67 chr9 37175125 37175622 -105095822 + L1MCc LINE L1 1380 1853 -5088 1911 156 10 3 chr9 37175622 37175911 -105095533 - AluJb SINE Alu -21 291 1 1629 256 45 67 chr9 37175911 37176250 -105095194 + L1MCc LINE L1 1853 2198 -4743 3641 166 18 14 chr9 37176328 37176986 -105094458 - L1MB5 LINE L1 0 6174 5514 646 258 144 63 chr9 37177061 37177603 -105093841 + MLT1G1 LTR MaLR 1 586 -9 2333 99 13 0 chr9 37177646 37177950 -105093494 - AluY SINE Alu -3 308 1 490 302 53 63 chr9 37177964 37178282 -105093162 + MLT1L LTR MaLR 193 507 -108 813 268 61 3 chr9 37178469 37178782 -105092662 + L1MC4a LINE L1 5385 5715 -2093 4315 109 180 116 chr9 37178782 37180019 -105091425 - pTR5 LTR ERV1 -2 2436 829 421 246 72 7 chr9 37180019 37180157 -105091287 + L1MC4a LINE L1 5707 5853 -1955 2162 131 0 0 chr9 37180177 37180490 -105090954 - AluSq SINE Alu 0 313 1 228 176 0 0 chr9 37180553 37180587 -105090857 - MLT1F LTR MaLR -506 36 3 2362 93 3 0 chr9 37180654 37180966 -105090478 - AluSp SINE Alu 0 313 1 21 0 0 0 chr9 37181880 37181901 -105089543 + AT_rich Low_complexity Low_complexity 1 21 0 894 144 0 0 chr9 37181901 37182033 -105089411 - FLAM_C SINE Alu 0 133 2 757 156 64 0 chr9 37182192 37182333 -105089111 + MER58A DNA MER1_type 43 192 -32 1997 201 47 13 chr9 37183070 37183453 -105087991 - MSTD LTR MaLR 0 396 1 444 111 0 0 chr9 37184808 37184871 -105086573 + MER41B LTR ERV1 573 635 0 277 265 235 0 chr9 37185447 37185549 -105085895 + MIR3 SINE MIR 43 168 -40 1820 117 8 0 chr9 37185574 37185840 -105085604 + AluSx SINE Alu 31 298 -14 2072 98 3 35 chr9 37186003 37186318 -105085126 - AluSc SINE Alu -4 305 1 224 170 19 0 chr9 37186384 37186437 -105085007 + GA-rich Low_complexity Low_complexity 1 54 0 394 229 68 42 chr9 37186604 37186722 -105084722 + L2 LINE L2 3191 3311 -2 420 256 39 64 chr9 37188851 37189007 -105082437 - L2 LINE L2 -633 2681 2530 1801 150 13 20 chr9 37190315 37190615 -105080829 + AluJo SINE Alu 1 298 -14 681 161 140 0 chr9 37192015 37192158 -105079286 - MER5B DNA MER1_type -15 163 1 241 217 24 36 chr9 37192464 37192547 -105078897 + G-rich Low_complexity Low_complexity 6 87 0 269 315 7 0 chr9 37193521 37193664 -105077780 + (TG)n Simple_repeat Simple_repeat 1 144 0 213 94 0 0 chr9 37194736 37194768 -105076676 + (TCCCC)n Simple_repeat Simple_repeat 1 32 0 261 57 0 0 chr9 37195299 37195334 -105076110 + (TG)n Simple_repeat Simple_repeat 1 35 0 1250 295 45 19 chr9 37196137 37196351 -105075093 - L2 LINE L2 -8 3305 3098 2089 91 30 14 chr9 37196351 37196647 -105074797 - AluSx SINE Alu -11 301 1 1250 295 45 19 chr9 37196647 37197013 -105074431 - L2 LINE L2 -215 3098 2703 1776 168 3 16 chr9 37198342 37198658 -105072786 - AluJo SINE Alu 0 312 1 187 270 54 0 chr9 37199116 37199190 -105072254 - L2 LINE L2 -35 3237 3160 2216 93 0 0 chr9 37199248 37199539 -105071905 - AluSg SINE Alu -19 291 1 421 284 226 24 chr9 37199690 37199898 -105071546 - MIR SINE MIR -1 261 12 229 268 0 18 chr9 37202523 37202579 -105068865 + (TTGGGG)n Simple_repeat Simple_repeat 1 55 0 222 91 0 0 chr9 37205701 37205734 -105065710 + (CGGGG)n Simple_repeat Simple_repeat 1 33 0 433 204 11 11 chr9 37206892 37206980 -105064464 - L2 LINE L2 0 3313 3226 2235 65 0 0 chr9 37206982 37207282 -105064162 + AluSg1 SINE Alu 1 300 0 4739 83 4 82 chr9 37208882 37209602 -105061842 + MER4A LTR ERV1 1 664 0 1590 266 64 79 chr9 37210033 37210756 -105060688 + MER21B LTR ERV1 3 714 -149 2204 179 112 16 chr9 37211580 37212010 -105059434 - MER70A LTR ERVL 0 472 2 423 0 0 0 chr9 37212124 37212171 -105059273 + (TCCA)n Simple_repeat Simple_repeat 4 50 0 213 295 25 25 chr9 37212192 37212314 -105059130 + (TTCA)n Simple_repeat Simple_repeat 3 124 0 237 216 193 11 chr9 37212330 37212418 -105059026 - MIR SINE MIR -2 260 157 257 359 61 35 chr9 37212545 37212743 -105058701 + MLT1K LTR MaLR 172 374 -214 2179 135 71 6 chr9 37212743 37213107 -105058337 - MSTC LTR MaLR 0 428 41 940 160 0 53 chr9 37213107 37213295 -105058149 - FRAM SINE Alu 0 176 1 413 57 0 0 chr9 37213295 37213348 -105058096 - MSTC LTR MaLR -375 53 1 1867 158 7 0 chr9 37213394 37213692 -105057752 + AluSx SINE Alu 5 304 -8 334 288 12 81 chr9 37213709 37213775 -105057669 + MLT1K LTR MaLR 436 505 -83 1466 189 40 3 chr9 37213775 37213940 -105057504 - AluSx SINE Alu 0 312 130 2363 74 0 0 chr9 37213940 37214237 -105057207 - AluY SINE Alu -14 297 1 1466 189 40 3 chr9 37214237 37214372 -105057072 - AluSx SINE Alu -182 130 1 334 288 12 81 chr9 37214372 37214465 -105056979 + MLT1K LTR MaLR 505 584 -4 340 240 59 33 chr9 37214474 37214618 -105056826 - MIR SINE MIR -62 146 7 1359 179 14 0 chr9 37214728 37214946 -105056498 - MER58A DNA MER1_type 0 224 4 209 250 0 0 chr9 37215059 37215119 -105056325 + (TG)n Simple_repeat Simple_repeat 2 61 0 1821 139 33 3 chr9 37215171 37215473 -105055971 - AluJb SINE Alu 0 312 2 293 241 209 37 chr9 37216166 37216353 -105055091 - L2 LINE L2 -213 3059 2841 1861 130 4 0 chr9 37216558 37216835 -105054609 + AluJb SINE Alu 1 278 -34 1031 291 85 55 chr9 37216855 37216928 -105054516 + L2 LINE L2 2254 2323 -991 2637 166 17 0 chr9 37216928 37217349 -105054095 - MSTA LTR MaLR 0 428 1 1031 291 85 55 chr9 37217349 37217706 -105053738 + L2 LINE L2 2323 2711 -603 2429 62 0 7 chr9 37217706 37218014 -105053430 - AluY SINE Alu -5 306 1 1031 291 85 55 chr9 37218014 37218205 -105053239 + L2 LINE L2 2711 2895 -419 3013 51 20 69 chr9 37218235 37218640 -105052804 + MLT2A1 LTR ERVL 3 426 -18 2019 115 23 7 chr9 37218640 37218945 -105052499 - AluSq SINE Alu -3 310 1 2171 113 3 0 chr9 37218945 37219246 -105052198 - AluSx SINE Alu -9 303 1 3013 51 20 69 chr9 37219246 37219287 -105052157 + MLT2A1 LTR ERVL 424 428 -16 510 267 144 7 chr9 37219336 37219482 -105051962 + LTR67 LTR ERVL 96 261 -296 333 228 13 0 chr9 37219502 37219581 -105051863 + HERVL LTR ERVL 3122 3201 -2453 395 368 19 0 chr9 37219581 37219790 -105051654 + HERVL LTR ERVL 3513 3725 -1929 1872 89 0 0 chr9 37219790 37220036 -105051408 + AluSc SINE Alu 40 285 -24 802 193 81 0 chr9 37220036 37220197 -105051247 + MLT1E1 LTR MaLR 339 512 -142 25 0 0 0 chr9 37220201 37220226 -105051218 + AT_rich Low_complexity Low_complexity 1 25 0 821 217 0 0 chr9 37220252 37220409 -105051035 + MLT1E1 LTR MaLR 498 654 0 2217 107 3 0 chr9 37220410 37220720 -105050724 + AluSx SINE Alu 1 311 -1 2689 26 0 0 chr9 37220723 37221034 -105050410 + AluYa5 SINE Alu 1 311 0 711 276 39 78 chr9 37221293 37221626 -105049818 + MLT1I LTR MaLR 87 406 -3 528 148 104 9 chr9 37221737 37221845 -105049599 + MLT1A2 LTR MaLR 1 122 -268 2265 113 0 0 chr9 37221845 37222156 -105049288 + AluSx SINE Alu 1 311 -1 666 118 13 92 chr9 37222693 37222727 -105048717 + MLT1A2 LTR MaLR 233 268 -106 1492 146 51 61 chr9 37222727 37223021 -105048423 - AluJb SINE Alu -21 291 1 666 118 13 92 chr9 37223021 37223138 -105048306 + MLT1A2 LTR MaLR 268 372 -2 513 309 85 49 chr9 37223427 37223649 -105047795 + LTR67 LTR ERVL 87 316 -241 2425 306 19 24 chr9 37223649 37223791 -105047653 - MER115 DNA AcHobo 0 693 552 2338 106 0 0 chr9 37223791 37224102 -105047342 - AluSx SINE Alu -1 311 1 2425 306 19 24 chr9 37224102 37224656 -105046788 - MER115 DNA AcHobo -141 552 1 432 215 99 35 chr9 37224697 37224869 -105046575 + LTR67 LTR ERVL 367 549 -8 415 306 16 8 chr9 37224877 37225001 -105046443 + L2 LINE L2 3163 3287 -26 231 200 73 0 chr9 37225146 37225201 -105046243 + MER91C DNA MER1_type 51 109 -31 522 328 78 0 chr9 37226336 37226540 -105044904 + MIR SINE MIR 37 256 -6 601 271 26 7 chr9 37226630 37226785 -105044659 + MIR SINE MIR 4 161 -101 359 231 42 100 chr9 37228137 37228307 -105043137 - MIR3 SINE MIR -28 180 16 235 243 16 0 chr9 37228590 37228724 -105042720 + (TGGA)n Simple_repeat Simple_repeat 1 136 0 583 294 125 30 chr9 37229533 37229836 -105041608 - L2 LINE L2 0 3272 2941 576 51 64 0 chr9 37230249 37230327 -105041117 - HY3 scRNA scRNA -1 100 18 405 0 0 0 chr9 37231166 37231211 -105040233 + (TG)n Simple_repeat Simple_repeat 2 46 0 553 265 87 55 chr9 37232998 37233251 -105038193 - MIR SINE MIR 0 262 2 485 311 87 0 chr9 37233306 37233502 -105037942 + MIR SINE MIR 29 241 -21 2110 129 0 43 chr9 37233516 37233842 -105037602 - AluSx SINE Alu 0 312 1 285 309 0 0 chr9 37233843 37233924 -105037520 + (TCCA)n Simple_repeat Simple_repeat 4 84 0 783 244 68 8 chr9 37233928 37234162 -105037282 + LTR33 LTR ERVL 2 249 -272 862 265 5 0 chr9 37234166 37234351 -105037093 + MER5A DNA MER1_type 1 186 -3 491 209 93 7 chr9 37234362 37234501 -105036943 + L1M4c LINE L1 1230 1380 -5004 348 250 0 10 chr9 37234515 37234619 -105036825 - L1M4c LINE L1 -4563 1821 1719 269 239 30 0 chr9 37234642 37234709 -105036735 - L1M4c LINE L1 -4648 1736 1668 378 82 0 0 chr9 37234709 37234758 -105036686 + AluSg/x SINE Alu 70 118 -182 272 61 0 0 chr9 37234766 37234799 -105036645 + AluSp/q SINE Alu 165 197 -106 2008 129 0 14 chr9 37234901 37235078 -105036366 - AluSx SINE Alu -2 310 137 2378 88 0 7 chr9 37235078 37235374 -105036070 - AluSq SINE Alu -19 294 1 2008 129 0 14 chr9 37235374 37235490 -105035954 - AluSx SINE Alu -175 137 21 532 259 25 12 chr9 37235499 37235661 -105035783 + LTR33 LTR ERVL 323 486 -35 4417 167 18 62 chr9 37235662 37236542 -105034902 + MER21B LTR ERV1 1 841 -22 281 159 0 0 chr9 37236561 37236605 -105034839 + LTR33 LTR ERVL 478 521 0 2216 119 3 0 chr9 37236947 37237249 -105034195 + AluSx SINE Alu 1 303 -9 359 310 35 35 chr9 37237391 37237536 -105033908 + ERVL LTR ERVL 542 686 -4968 284 173 156 150 chr9 37237955 37238068 -105033376 - MER5A DNA MER1_type -6 183 67 2326 102 0 0 chr9 37238068 37238361 -105033083 - AluSx SINE Alu -19 293 1 284 173 156 150 chr9 37238361 37238420 -105033024 - MER5A DNA MER1_type -122 67 10 820 336 80 21 chr9 37238424 37239028 -105032416 + ERVL LTR ERVL 1217 1905 -3851 1943 115 62 3 chr9 37239233 37239521 -105031923 - AluSp SINE Alu -8 305 1 813 280 129 19 chr9 37239541 37239912 -105031532 + ERVL LTR ERVL 3097 3508 -2146 779 251 35 0 chr9 37240006 37240209 -105031235 + ERVL LTR ERVL 3684 3893 -1871 486 226 0 10 chr9 37240219 37240321 -105031123 + LTR33 LTR ERVL 421 521 0 2298 224 142 10 chr9 37240460 37241566 -105029878 - L2 LINE L2 -3 3310 2078 961 198 0 0 chr9 37243384 37243561 -105027883 + AluJo SINE Alu 116 292 -20 2217 101 21 0 chr9 37243922 37244210 -105027234 - AluSx SINE Alu -18 294 1 504 75 0 0 chr9 37244396 37244463 -105026981 + MER41B LTR ERV1 481 547 -88 815 197 21 94 chr9 37244524 37244758 -105026686 - AluJb SINE Alu -94 218 2 1460 149 4 24 chr9 37244824 37245072 -105026372 - AluJo SINE Alu -69 243 1 195 42 0 0 chr9 37245220 37245244 -105026200 + (TG)n Simple_repeat Simple_repeat 2 25 0 2112 135 3 6 chr9 37245293 37245605 -105025839 + AluJo SINE Alu 1 311 -1 22 0 0 0 chr9 37246043 37246065 -105025379 + AT_rich Low_complexity Low_complexity 1 22 0 1294 156 156 12 chr9 37246065 37246322 -105025122 - AluJb SINE Alu -8 294 1 272 314 47 0 chr9 37246355 37246441 -105025003 - HAL1 LINE L1 -2417 90 1 773 144 0 0 chr9 37246523 37246641 -105024803 + FLAM_C SINE Alu 1 118 -15 21 36 0 0 chr9 37246641 37246669 -105024775 + AT_rich Low_complexity Low_complexity 1 28 0 491 228 137 25 chr9 37246932 37247173 -105024271 + HAL1 LINE L1 2118 2385 -122 901 158 57 0 chr9 37247581 37247739 -105023705 + FRAM SINE Alu 1 160 -16 2333 76 7 13 chr9 37248469 37248771 -105022673 - AluSq SINE Alu -13 300 1 810 294 35 0 chr9 37249685 37249995 -105021449 + L1ME3A LINE L1 3657 3977 -2169 1068 163 53 10 chr9 37250022 37250231 -105021213 + LTR52 LTR ERVL 202 419 -2 2871 234 64 35 chr9 37250234 37250483 -105020961 + L1ME3A LINE L1 5029 5269 -901 1579 187 3 36 chr9 37250483 37250788 -105020656 + AluJo SINE Alu 2 296 -16 2871 234 64 35 chr9 37250788 37251627 -105019817 + L1ME3A LINE L1 5269 6153 -17 1379 96 0 0 chr9 37251628 37251806 -105019638 + MSTA LTR MaLR 2 179 -249 15919 135 42 58 chr9 37251806 37252807 -105018637 + L1MA3 LINE L1 1677 2692 -5032 756 164 0 0 chr9 37252807 37252923 -105018521 + FLAM_C SINE Alu 1 116 -27 15919 135 42 58 chr9 37252923 37252962 -105018482 + L1MA3 LINE L1 2692 2730 -4994 1558 38 0 0 chr9 37252962 37253145 -105018299 - L1PA8 LINE L1 0 6172 5990 15919 135 42 58 chr9 37253145 37253623 -105017821 + L1MA3 LINE L1 2730 3214 -4510 1549 147 22 0 chr9 37253623 37253899 -105017545 + AluSx SINE Alu 55 335 0 15919 135 42 58 chr9 37253899 37254439 -105017005 + L1MA3 LINE L1 3214 3761 -3963 2262 118 0 0 chr9 37254439 37254743 -105016701 + AluSq SINE Alu 1 304 -9 15919 135 42 58 chr9 37254743 37258717 -105012727 + L1MA3 LINE L1 3761 7724 0 1414 95 68 16 chr9 37258719 37258971 -105012473 - L1M2 LINE L1 -768 5529 5265 26 30 0 0 chr9 37258973 37259006 -105012438 + AT_rich Low_complexity Low_complexity 1 33 0 925 198 0 12 chr9 37259006 37259168 -105012276 - FRAM SINE Alu -16 160 1 5079 158 29 42 chr9 37259169 37259480 -105011964 - L1 LINE L1 -874 5914 5601 2039 116 4 0 chr9 37259480 37259755 -105011689 - AluSp SINE Alu -37 276 1 5079 158 29 42 chr9 37259755 37260255 -105011189 - L1 LINE L1 -1187 5601 5117 2003 125 7 0 chr9 37260255 37260559 -105010885 - AluSg SINE Alu 0 306 1 5079 158 29 42 chr9 37260559 37260837 -105010607 - L1 LINE L1 -1671 5117 4837 * 8304 208 28 18 chr9 37260836 37262484 -105008960 - L1 LINE L1 -5120 1669 5 1436 218 27 7 chr9 37262638 37262932 -105008512 + LTR53 LTR ERVL 209 508 -11 1960 145 0 0 chr9 37264066 37264362 -105007082 + AluJb SINE Alu 1 296 -16 237 208 19 0 chr9 37264373 37264426 -105007018 - MER5A DNA MER1_type 0 189 136 1185 181 48 20 chr9 37264427 37264675 -105006769 - MER45B DNA AcHobo 0 1040 786 482 247 140 6 chr9 37264698 37264876 -105006568 - L2 LINE L2 0 3313 3112 45714 34 0 1 chr9 37265055 37271211 -105000233 - L1PA3 LINE L1 -3 6152 4 400 231 0 11 chr9 37271211 37271302 -105000142 - MER45B DNA AcHobo -242 798 709 1032 182 111 0 chr9 37271331 37271529 -104999915 - MER45B DNA AcHobo -711 329 110 494 272 80 42 chr9 37271756 37271969 -104999475 + MIR SINE MIR 7 227 -35 1080 284 85 44 chr9 37272121 37272254 -104999190 + L1MC3 LINE L1 4151 4277 -2114 249 33 0 0 chr9 37272254 37272284 -104999160 + (GA)n Simple_repeat Simple_repeat 1 30 0 1080 284 85 44 chr9 37272284 37272483 -104998961 + L1MC3 LINE L1 4277 4466 -1925 2185 95 7 20 chr9 37272483 37272777 -104998667 - AluSx SINE Alu -22 290 1 1080 284 85 44 chr9 37272777 37273879 -104997565 + L1MC3 LINE L1 4466 5643 -748 304 192 0 0 chr9 37273884 37273936 -104997508 + LTR16B LTR ERVL 413 464 0 255 239 22 22 chr9 37273936 37274028 -104997416 + L1MC3 LINE L1 5913 6004 -1804 2023 149 3 0 chr9 37274188 37274490 -104996954 + AluSq SINE Alu 1 303 -10 441 248 7 46 chr9 37274492 37274506 -104996938 - L1MC4a LINE L1 -2 7806 7793 1980 167 39 6 chr9 37274506 37274842 -104996602 - MER7A DNA MER2_type 0 346 2 441 248 7 46 chr9 37274842 37274980 -104996464 - L1MC4a LINE L1 -15 7793 7660 * 466 209 11 0 chr9 37274979 37275070 -104996374 - L1MD2 LINE L1 -216 6143 6052 542 269 60 10 chr9 37275568 37275769 -104995675 + L1ME LINE L1 5533 5743 -378 3462 151 20 39 chr9 37276029 37276348 -104995096 + L1MC3 LINE L1 6416 6717 -1068 2486 74 3 0 chr9 37276348 37276646 -104994798 - AluSp SINE Alu -14 299 1 3462 151 20 39 chr9 37276646 37276987 -104994457 + L1MC3 LINE L1 6717 7063 -722 2348 176 5 0 chr9 37277001 37277399 -104994045 + L1MC3 LINE L1 7290 7689 -96 4559 183 31 24 chr9 37277399 37277846 -104993598 + L1MB3 LINE L1 4934 5376 -807 2044 136 3 7 chr9 37277846 37278148 -104993296 + AluSq SINE Alu 1 301 -12 4559 183 31 24 chr9 37278148 37278927 -104992517 + L1MB3 LINE L1 5376 6180 -3 453 154 55 0 chr9 37278936 37279027 -104992417 + L1MC3 LINE L1 7690 7785 0 2761 176 32 11 chr9 37279050 37279583 -104991861 + L1MB8 LINE L1 5586 6129 -49 5962 211 88 29 chr9 37279672 37281548 -104989896 - L1M2 LINE L1 -4709 2140 17 4341 220 38 7 chr9 37281547 37282707 -104988737 + L1MB4 LINE L1 3469 4663 -2902 * 4317 184 50 41 chr9 37282753 37283077 -104988367 + L1MB4 LINE L1 5945 6265 -1334 2254 99 0 0 chr9 37283077 37283382 -104988062 - AluSq SINE Alu 0 305 1 4317 184 50 41 chr9 37283382 37283643 -104987801 + L1MB4 LINE L1 6265 6522 -1077 2074 121 47 0 chr9 37283643 37283941 -104987503 - AluJb SINE Alu 0 312 1 4317 184 50 41 chr9 37283941 37284988 -104986456 + L1MB4 LINE L1 6522 7597 -2 472 125 11 34 chr9 37284996 37285084 -104986360 + L1MB8 LINE L1 6093 6178 0 215 273 73 0 chr9 37286615 37286670 -104984774 - L3 LINE CR1 -1086 491 433 419 110 82 0 chr9 37286696 37286769 -104984675 + MER110A LTR ERV1 1 79 -389 639 194 101 73 chr9 37286772 37287020 -104984424 + MER110A LTR ERV1 214 468 0 1492 179 12 128 chr9 37288377 37288790 -104982654 - MLT1A1 LTR MaLR 0 365 1 429 165 13 0 chr9 37288908 37288987 -104982457 + MLT1D LTR MaLR 426 505 0 289 267 11 44 chr9 37289341 37289431 -104982013 + L2 LINE L2 3184 3270 -43 26 0 0 0 chr9 37289611 37289637 -104981807 + AT_rich Low_complexity Low_complexity 1 26 0 31 0 0 0 chr9 37290664 37290695 -104980749 + AT_rich Low_complexity Low_complexity 1 31 0 289 228 119 30 chr9 37291000 37291101 -104980343 + MER5A DNA MER1_type 79 188 -1 303 165 78 68 chr9 37291285 37291388 -104980056 - HAL1b LINE L1 0 1348 1245 1930 145 0 17 chr9 37291388 37291699 -104979745 - AluJo SINE Alu 0 306 1 3707 120 18 40 chr9 37292043 37292642 -104978802 + LTR60 LTR ERV1 1 586 0 2726 132 13 66 chr9 37293062 37293198 -104978246 - MER65A LTR ERV1 0 445 303 1853 164 3 10 chr9 37293198 37293503 -104977941 - AluJo SINE Alu -9 303 1 2726 132 13 66 chr9 37293503 37293836 -104977608 - MER65A LTR ERV1 -142 303 1 2557 274 126 56 chr9 37293918 37295480 -104975964 - L2 LINE L2 -33 3280 1618 2392 76 3 13 chr9 37295781 37296085 -104975359 + AluSp SINE Alu 1 301 -12 36 87 0 0 chr9 37296420 37296512 -104974932 + AT_rich Low_complexity Low_complexity 1 92 0 339 342 110 43 chr9 37296803 37297104 -104974340 + L1ME1 LINE L1 16 336 -6204 206 130 0 65 chr9 37297139 37297185 -104974259 + (TTTTC)n Simple_repeat Simple_repeat 2 44 0 2283 253 50 21 chr9 37297619 37298543 -104972901 + L1ME1 LINE L1 910 1820 -4720 682 168 44 0 chr9 37298549 37298662 -104972782 + AluJb SINE Alu 191 308 -4 809 208 84 69 chr9 37298662 37299009 -104972435 + L1ME1 LINE L1 1814 2165 -4375 * 1930 226 93 36 chr9 37299007 37299107 -104972337 + L1ME1 LINE L1 5074 5167 -1393 1623 190 19 16 chr9 37299107 37299418 -104972026 + AluJb SINE Alu 1 312 0 1930 226 93 36 chr9 37299418 37300467 -104970977 + L1ME1 LINE L1 5167 6289 -271 3329 156 51 50 chr9 37300471 37301292 -104970152 - LTR1 LTR ERV1 0 785 1 933 255 4 20 chr9 37301345 37301596 -104969848 + L1ME1 LINE L1 6295 6541 -19 5801 122 25 5 chr9 37301607 37302498 -104968946 - L1PA16 LINE L1 -4 6162 5254 530 285 75 0 chr9 37302653 37302853 -104968591 + MIR SINE MIR 47 261 -1 1315 198 21 0 chr9 37303301 37303538 -104967906 + L1PB4 LINE L1 5915 6156 0 7221 48 31 12 chr9 37303780 37304874 -104966570 + L1PA8 LINE L1 4711 5830 -342 2159 74 0 0 chr9 37304874 37305132 -104966312 + AluY SINE Alu 37 294 -17 7221 48 31 12 chr9 37305132 37305473 -104965971 + L1PA8 LINE L1 5830 6163 -9 489 265 54 67 chr9 37305552 37305775 -104965669 + MLT1K LTR MaLR 23 242 -346 449 278 128 75 chr9 37307341 37307607 -104963837 + MLT1K LTR MaLR 279 558 -30 399 286 8 30 chr9 37307954 37308087 -104963357 - MIR SINE MIR -110 152 23 6029 180 28 32 chr9 37308092 37309814 -104961630 - L1MB8 LINE L1 -6 6172 4445 213 39 0 0 chr9 37309814 37309840 -104961604 + (TTG)n Simple_repeat Simple_repeat 2 27 0 6029 180 28 32 chr9 37309840 37309862 -104961582 - L1MB8 LINE L1 -1733 4445 4424 2150 125 0 0 chr9 37309862 37310151 -104961293 - AluSx SINE Alu -23 289 1 6029 180 28 32 chr9 37310151 37310647 -104960797 - L1MB8 LINE L1 -1754 4424 3940 22 0 0 0 chr9 37310877 37310899 -104960545 + AT_rich Low_complexity Low_complexity 1 22 0 603 271 91 20 chr9 37311477 37311676 -104959768 + MIR SINE MIR 2 214 -48 899 174 7 0 chr9 37311708 37311852 -104959592 + FRAM SINE Alu 1 144 -32 1245 210 9 103 chr9 37311883 37312252 -104959192 - MLT1A1 LTR MaLR 0 365 34 1542 29 6 0 chr9 37312253 37312462 -104958982 + L1PA3 LINE L1 5965 6174 0 31 0 0 0 chr9 37312637 37312668 -104958776 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr9 37313317 37313340 -104958104 + GC_rich Low_complexity Low_complexity 1 23 0 191 61 30 0 chr9 37313391 37313424 -104958020 + (CCG)n Simple_repeat Simple_repeat 2 35 0 344 254 225 14 chr9 37314426 37314564 -104956880 - MIR SINE MIR -15 247 81 2008 169 108 11 chr9 37314661 37315022 -104956422 + MSTD LTR MaLR 1 396 0 2101 154 38 47 chr9 37315059 37315482 -104955962 + L1M3 LINE L1 5008 5424 -756 700 197 7 36 chr9 37315482 37315619 -104955825 + FLAM_A SINE Alu 1 133 0 2101 154 38 47 chr9 37315619 37315858 -104955586 + L1M3 LINE L1 5424 5664 -516 2541 209 89 13 chr9 37316733 37317283 -104954161 - MLT1E LTR MaLR 0 593 2 1738 219 44 22 chr9 37317726 37318133 -104953311 + LTR40c LTR ERVL 47 462 -3 2073 105 39 0 chr9 37318138 37318423 -104953021 - AluSq SINE Alu -16 297 2 2349 94 0 0 chr9 37318705 37319014 -104952430 - AluY SINE Alu -2 309 1 238 45 45 23 chr9 37319469 37319513 -104951931 + (TTTTA)n Simple_repeat Simple_repeat 1 45 0 230 271 112 9 chr9 37319677 37319784 -104951660 - L1ME LINE L1 -320 5870 5753 2081 167 70 3 chr9 37319808 37320150 -104951294 - MLT1A1 LTR MaLR 0 365 1 371 123 68 0 chr9 37320479 37320552 -104950892 - L1MA4 LINE L1 -125 6175 6098 1017 203 280 34 chr9 37320553 37320644 -104950800 - L1ME LINE L1 -743 5504 5437 1809 152 0 0 chr9 37320644 37320908 -104950536 - AluJo SINE Alu -19 293 30 1017 203 280 34 chr9 37320908 37321350 -104950094 - L1ME LINE L1 -810 5437 4835 4372 249 52 47 chr9 37321352 37322072 -104949372 - L1ME LINE L1 -1752 4463 3748 709 156 92 0 chr9 37322072 37322181 -104949263 + AluJb SINE Alu 3 121 -191 4372 249 52 47 chr9 37322181 37323523 -104947921 - L1ME LINE L1 -2467 3748 2355 218 95 24 0 chr9 37323523 37323565 -104947879 + (TA)n Simple_repeat Simple_repeat 2 44 0 4372 249 52 47 chr9 37323565 37323619 -104947825 - L1ME LINE L1 -3860 2355 2303 * 6052 92 5 9 chr9 37323613 37324458 -104946986 - L1PA15 LINE L1 -2 6163 5323 1670 239 99 35 chr9 37324458 37324763 -104946681 - L1ME LINE L1 -4039 2357 2073 1998 250 105 51 chr9 37324763 37325392 -104946052 + MLT2F LTR ERVL 1 663 0 1670 239 99 35 chr9 37325392 37325800 -104945644 - L1ME LINE L1 -4323 2073 1598 793 178 115 0 chr9 37325777 37325951 -104945493 - L1MB7 LINE L1 0 6253 6060 * 302 323 43 30 chr9 37326039 37326203 -104945241 - MER5A DNA MER1_type 0 189 24 2905 13 0 0 chr9 37326307 37326623 -104944821 + AluYb8 SINE Alu 1 316 -2 201 220 0 51 chr9 37328363 37328422 -104943022 + (TTGGGG)n Simple_repeat Simple_repeat 5 60 0 335 22 152 0 chr9 37329132 37329178 -104942266 + MADE1 DNA Mariner 1 53 -27 1807 277 80 4 chr9 37331658 37332336 -104939108 + L2 LINE L2 1519 2247 -1067 916 216 117 87 chr9 37332384 37332796 -104938648 - L2 LINE L2 -616 2698 2275 231 342 140 18 chr9 37332794 37332908 -104938536 + L2 LINE L2 3138 3265 -7 * 292 303 28 9 chr9 37333346 37333455 -104937989 - L2 LINE L2 -1000 2314 2204 289 214 34 22 chr9 37333457 37333546 -104937898 - MIR SINE MIR -96 166 77 189 298 89 16 chr9 37340702 37340826 -104930618 - MIR SINE MIR -70 192 60 634 189 0 14 chr9 37343806 37343954 -104927490 + CT-rich Low_complexity Low_complexity 3 148 0 801 258 99 44 chr9 37344458 37344892 -104926552 - L2 LINE L2 -1239 2075 1618 2403 76 3 13 chr9 37345192 37345495 -104925949 + AluSp SINE Alu 1 300 -13 461 265 11 3 chr9 37346093 37346223 -104925221 - MER5A DNA MER1_type -48 141 1 588 207 0 0 chr9 37347690 37347801 -104923643 - L1M3 LINE L1 -429 5751 5641 3147 221 33 40 chr9 37347861 37347918 -104923526 - L1ME1 LINE L1 -5 6161 6105 2189 115 3 0 chr9 37347918 37348214 -104923230 + AluSq SINE Alu 1 297 -16 3147 221 33 40 chr9 37348214 37348728 -104922716 - L1ME1 LINE L1 -61 6105 5595 1686 181 10 67 chr9 37348728 37349114 -104922330 + MLT1A1 LTR MaLR 1 364 -1 3147 221 33 40 chr9 37349114 37349399 -104922045 - L1ME1 LINE L1 -571 5595 5310 805 210 176 0 chr9 37349731 37349969 -104921475 - L1ME1 LINE L1 -1286 4860 4581 436 154 0 13 chr9 37349971 37350049 -104921395 - MLT1E LTR MaLR 0 593 517 25 0 0 0 chr9 37350059 37350084 -104921360 + AT_rich Low_complexity Low_complexity 1 25 0 272 159 0 0 chr9 37350084 37350128 -104921316 - FLAM SINE Alu -3 130 87 6060 185 18 35 chr9 37350228 37351847 -104919597 - L1M4c LINE L1 -2660 4905 3313 45271 36 2 1 chr9 37351865 37358011 -104913433 - L1PA3 LINE L1 0 6155 2 1841 236 33 43 chr9 37358115 37358219 -104913225 - L1M4c LINE L1 -4411 3154 3050 2459 131 64 29 chr9 37358219 37358638 -104912806 + Tigger2a DNA MER2_type 1 434 0 1841 236 33 43 chr9 37358638 37359061 -104912383 - L1M4c LINE L1 -4515 3050 2631 472 215 131 0 chr9 37359061 37359168 -104912276 - FLAM_A SINE Alu -12 121 1 1841 236 33 43 chr9 37359168 37359248 -104912196 - L1M4c LINE L1 -4934 2631 2552 16867 198 18 31 chr9 37359263 37359803 -104911641 - L1P3 LINE L1 -2039 4422 3877 2830 20 0 0 chr9 37359803 37360107 -104911337 + AluYa5 SINE Alu 1 304 -7 16867 198 18 31 chr9 37360107 37364003 -104907441 - L1P3 LINE L1 -2584 3877 8 2037 221 64 80 chr9 37364008 37364325 -104907119 - L1M3c LINE L1 -4717 2320 1999 195 42 0 0 chr9 37364325 37364349 -104907095 + (TTTA)n Simple_repeat Simple_repeat 4 27 0 2037 221 64 80 chr9 37364349 37364955 -104906489 - L1M3c LINE L1 -5038 1999 718 793 244 97 52 chr9 37364975 37365377 -104906067 - L1M4c LINE L1 -5427 2140 1721 230 196 20 39 chr9 37365824 37365875 -104905569 - L1M4c LINE L1 -6078 1418 1369 2214 277 32 17 chr9 37365875 37366583 -104904861 - L1MEc LINE L1 -5642 754 36 372 70 0 53 chr9 37366656 37366713 -104904731 + MADE1 DNA Mariner 27 80 0 189 0 0 0 chr9 37366940 37366961 -104904483 + (TG)n Simple_repeat Simple_repeat 1 21 0 237 304 38 0 chr9 37367035 37367114 -104904330 + L1ME LINE L1 142 223 -5982 239 261 59 25 chr9 37367584 37367703 -104903741 + L1ME LINE L1 628 750 -5646 1337 213 80 1 chr9 37367708 37368097 -104903347 + L1MC4 LINE L1 6761 7216 -592 792 205 119 5 chr9 37368159 37368344 -104903100 - MLT1A1 LTR MaLR 0 365 160 16729 150 60 26 chr9 37368359 37369898 -104901546 + L1M1 LINE L1 400 1886 -5679 333 0 0 0 chr9 37369898 37369935 -104901509 + (GA)n Simple_repeat Simple_repeat 2 38 0 16729 150 60 26 chr9 37369935 37371377 -104900067 + L1M1 LINE L1 1886 3278 -4287 2003 80 0 16 chr9 37371377 37371626 -104899818 + AluSc SINE Alu 1 245 -64 16729 150 60 26 chr9 37371626 37371763 -104899681 + L1M1 LINE L1 3278 3354 -4211 2068 135 3 22 chr9 37371763 37372081 -104899363 + AluSx SINE Alu 1 312 0 16729 150 60 26 chr9 37372081 37372147 -104899297 + L1M1 LINE L1 3354 3416 -4149 1049 231 63 65 chr9 37372148 37372566 -104898878 - MLT1E LTR MaLR -101 492 36 5789 83 29 2 chr9 37375231 37376029 -104895415 - L1PA11 LINE L1 -1 6173 5355 2489 134 15 106 chr9 37376518 37377057 -104894387 - L1MC1 LINE L1 0 6333 5844 877 175 28 0 chr9 37377057 37377200 -104894244 - AluJb SINE Alu -21 291 145 235 79 0 26 chr9 37377200 37377238 -104894206 + L1P4 LINE L1 5713 5749 -419 3466 191 57 15 chr9 37377241 37378673 -104892771 - L1MC1 LINE L1 -491 5853 4360 11580 23 7 1 chr9 37378689 37380795 -104890649 - L1PA2 LINE L1 -3 6152 4032 756 62 0 0 chr9 37380795 37380892 -104890552 + L1PA2 LINE L1 3911 4007 -2139 25 0 0 0 chr9 37381271 37381296 -104890148 + AT_rich Low_complexity Low_complexity 1 25 0 2434 112 36 29 chr9 37381296 37381681 -104889763 - L1MA1 LINE L1 -4 6298 5911 529 262 56 60 chr9 37381850 37382083 -104889361 - MER112 DNA MER1_type -8 252 21 405 0 0 0 chr9 37382384 37382429 -104889015 + (CA)n Simple_repeat Simple_repeat 1 45 0 336 24 0 0 chr9 37382428 37382469 -104888975 + (TC)n Simple_repeat Simple_repeat 1 41 0 * 2501 118 16 3 chr9 37382590 37382962 -104888482 + L1MC2 LINE L1 5605 5981 -352 * 4430 135 74 33 chr9 37382955 37383143 -104888301 + L1MB4 LINE L1 5288 5467 -713 195 42 0 0 chr9 37383143 37383167 -104888277 + (GAAA)n Simple_repeat Simple_repeat 2 25 0 4430 135 74 33 chr9 37383167 37383478 -104887966 + L1MB4 LINE L1 5467 5764 -416 2331 104 3 0 chr9 37383478 37383785 -104887659 + AluSx SINE Alu 1 308 -4 4430 135 74 33 chr9 37383785 37384136 -104887308 + L1MB4 LINE L1 5764 6174 -6 341 145 0 16 chr9 37384148 37384210 -104887234 + L1MC2 LINE L1 5968 6028 -316 1415 99 26 0 chr9 37384210 37384401 -104887043 - L1PA7 LINE L1 -1 6153 5958 2051 130 9 22 chr9 37384401 37384722 -104886722 + L1MC2 LINE L1 6015 6333 -11 42240 63 6 4 chr9 37384732 37390863 -104880581 + L1PA5 LINE L1 11 6154 0 3777 265 94 43 chr9 37392527 37393208 -104878236 + L2 LINE L2 1486 2131 -1182 766 87 0 16 chr9 37393208 37393335 -104878109 + (TCTA)n Simple_repeat Simple_repeat 2 126 0 3777 265 94 43 chr9 37393335 37394392 -104877052 + L2 LINE L2 2131 3312 -1 838 308 70 39 chr9 37394509 37394866 -104876578 + L2 LINE L2 2898 3265 -7 197 204 41 20 chr9 37395119 37395168 -104876276 - L3 LINE CR1 -951 626 577 2359 118 0 0 chr9 37399789 37400102 -104871342 + AluSq SINE Alu 1 313 0 294 286 168 31 chr9 37401109 37401303 -104870141 - MIR SINE MIR -18 244 22 2229 107 3 3 chr9 37403344 37403644 -104867800 + AluSx SINE Alu 1 300 -12 788 147 128 39 chr9 37403857 37404064 -104867380 + L1MB4 LINE L1 5980 6179 -1 5701 93 1 0 chr9 37404149 37404881 -104866563 - L1PB1 LINE L1 0 6151 5419 501 281 15 15 chr9 37406291 37406426 -104865018 + MER5A DNA MER1_type 7 141 -48 1475 222 35 86 chr9 37406695 37406787 -104864657 + L1M4 LINE L1 3258 3353 -2793 2030 141 0 0 chr9 37406787 37407071 -104864373 + AluJb SINE Alu 1 284 -28 1475 222 35 86 chr9 37407071 37407130 -104864314 + L1M4 LINE L1 3353 3413 -2733 1147 149 198 71 chr9 37407130 37407453 -104863991 + MLT1A1 LTR MaLR 1 364 -1 1475 222 35 86 chr9 37407453 37407846 -104863598 + L1M4 LINE L1 3413 3775 -2371 739 197 90 34 chr9 37407844 37408078 -104863366 + L1MC5 LINE L1 7347 7593 -368 * 621 121 0 0 chr9 37408105 37408188 -104863256 + AluS SINE Alu 2 84 -228 650 243 56 25 chr9 37408190 37408474 -104862970 + L1MC5 LINE L1 7585 7877 -84 1934 163 0 16 chr9 37408839 37409145 -104862299 + AluJb SINE Alu 3 303 -9 342 239 129 18 chr9 37409448 37409618 -104861826 - MIR SINE MIR -6 256 67 1564 168 8 0 chr9 37409796 37410046 -104861398 + AluJo SINE Alu 41 292 -20 4731 194 3 42 chr9 37410231 37411372 -104860072 - L1 LINE L1 -1576 4570 3371 186 329 62 41 chr9 37412049 37412195 -104859249 - L2 LINE L2 -189 3083 2935 1828 191 12 9 chr9 37412601 37412946 -104858498 - MER4D LTR ERV1 0 903 558 879 103 0 0 chr9 37413018 37413134 -104858310 + AluSg/x SINE Alu 187 302 -10 879 167 86 62 chr9 37413134 37413369 -104858075 + LTR48 LTR ERV1 61 345 -354 357 191 0 16 chr9 37413367 37413430 -104858014 - AluJo SINE Alu -14 288 227 * 858 173 6 26 chr9 37413430 37413586 -104857858 - AluJo SINE Alu -148 164 12 463 216 81 0 chr9 37413596 37413707 -104857737 + LTR48 LTR ERV1 337 456 -331 909 228 39 27 chr9 37413725 37413984 -104857460 + LTR48B LTR ERV1 381 642 -2 2318 94 0 28 chr9 37414293 37414611 -104856833 - AluSg SINE Alu -1 309 1 744 256 97 43 chr9 37414777 37415148 -104856296 - L2 LINE L2 0 3313 2923 233 197 15 30 chr9 37415266 37415308 -104856136 + (CTTAT)n Simple_repeat Simple_repeat 4 45 -23 2271 101 7 7 chr9 37415308 37415616 -104855828 - AluSg SINE Alu -2 308 1 543 246 149 0 chr9 37415619 37415733 -104855711 - FLAM_A SINE Alu -2 131 1 233 197 15 30 chr9 37415733 37415752 -104855692 + (CTTAT)n Simple_repeat Simple_repeat 47 68 0 2443 50 0 20 chr9 37416095 37416397 -104855047 - AluY SINE Alu -15 296 1 212 261 0 0 chr9 37416739 37416785 -104854659 + CT-rich Low_complexity Low_complexity 5 50 0 203 267 0 0 chr9 37417232 37417277 -104854167 + CT-rich Low_complexity Low_complexity 5 49 0 877 120 72 30 chr9 37417383 37417550 -104853894 + L1MA8 LINE L1 6112 6285 -6 1818 185 0 13 chr9 37417784 37418086 -104853358 - AluJo SINE Alu -14 298 1 2310 97 3 3 chr9 37418205 37418514 -104852930 - AluSg1 SINE Alu 0 309 1 366 308 58 55 chr9 37418718 37419010 -104852434 + L1MDa LINE L1 57 349 -6191 229 323 50 10 chr9 37419380 37419479 -104851965 + L1MDa LINE L1 794 896 -5634 1394 246 102 39 chr9 37419589 37420344 -104851100 + L1MDa LINE L1 920 1679 -4861 507 278 71 71 chr9 37420344 37420596 -104850848 + MER110-int LTR ERV1 2213 2464 -2183 574 246 157 26 chr9 37420658 37421093 -104850351 - HAL1 LINE L1 -1843 664 142 371 353 41 63 chr9 37421278 37421547 -104849897 - HAL1b LINE L1 -1059 289 27 1369 147 4 26 chr9 37421737 37421968 -104849476 - AluJb SINE Alu -1 311 86 1673 85 0 5 chr9 37421984 37422196 -104849248 - AluJb SINE Alu -2 310 100 1791 130 77 80 chr9 37422764 37423140 -104848304 + THE1C LTR MaLR 1 375 0 1713 188 102 5 chr9 37423326 37423699 -104847745 + Tigger6a DNA MER2_type 405 813 -270 192 40 0 0 chr9 37424054 37424079 -104847365 + (TCTCC)n Simple_repeat Simple_repeat 5 29 0 1335 144 55 19 chr9 37425578 37425849 -104845595 + Tigger6a DNA MER2_type 803 1083 0 452 158 0 0 chr9 37426012 37426088 -104845356 - L1MC2 LINE L1 -8 6336 6261 2207 119 44 0 chr9 37426133 37426476 -104844968 - L1MA4 LINE L1 -7 6293 5936 5245 109 23 9 chr9 37426482 37427270 -104844174 - L1MA3 LINE L1 -106 6199 5401 4960 150 25 0 chr9 37427269 37428136 -104843308 - L1MA3 LINE L1 -1293 4853 3965 * 764 156 4 110 chr9 37428156 37428414 -104843030 - MER31-int LTR ERV1 -3250 1686 1270 8466 210 53 16 chr9 37430016 37434836 -104836608 - L1 LINE L1 -2191 4597 5 232 196 0 0 chr9 37434836 37434887 -104836557 - L2 LINE L2 -566 2748 2698 1899 74 47 37 chr9 37434895 37434970 -104836474 + L1MA2 LINE L1 6004 6077 -227 1733 104 0 0 chr9 37434970 37435191 -104836253 + AluSq SINE Alu 83 303 -10 1899 74 47 37 chr9 37435191 37435413 -104836031 + L1MA2 LINE L1 6077 6304 0 464 196 101 51 chr9 37436342 37436480 -104834964 + L2 LINE L2 3168 3312 -1 2304 128 35 99 chr9 37437833 37438039 -104833405 + MSTA LTR MaLR 2 165 -263 2523 66 3 0 chr9 37438049 37438351 -104833093 + AluY SINE Alu 1 303 -8 1281 103 20 5 chr9 37438351 37438535 -104832909 + L1PB2 LINE L1 5962 6151 0 2304 128 35 99 chr9 37438535 37438782 -104832662 + MSTA LTR MaLR 165 426 -2 244 194 56 56 chr9 37439452 37439524 -104831920 + L2 LINE L2 3196 3267 -5 40 83 0 0 chr9 37439645 37439741 -104831703 + AT_rich Low_complexity Low_complexity 1 96 0 22 35 0 0 chr9 37439749 37439778 -104831666 + AT_rich Low_complexity Low_complexity 1 29 0 439 239 14 78 chr9 37439897 37439941 -104831503 + L2 LINE L2 3181 3226 -87 739 149 15 22 chr9 37439941 37440075 -104831369 - FLAM_A SINE Alu 0 133 1 439 239 14 78 chr9 37440075 37440172 -104831272 + L2 LINE L2 3226 3313 0 237 253 0 76 chr9 37440266 37440345 -104831099 - MIR SINE MIR 0 262 190 1699 84 0 5 chr9 37440396 37440610 -104830834 + AluY SINE Alu 1 213 -98 1393 114 144 0 chr9 37440716 37440917 -104830527 - AluSx SINE Alu -39 273 44 410 188 47 47 chr9 37441789 37441874 -104829570 + MER58B DNA MER1_type 256 340 -1 251 163 0 0 chr9 37441856 37441899 -104829545 + MER58B DNA MER1_type 299 341 0 * 889 245 108 89 chr9 37441900 37442221 -104829223 - L2 LINE L2 -1134 2180 1842 2235 112 0 26 chr9 37442221 37442533 -104828911 + AluSx SINE Alu 3 306 -6 889 245 108 89 chr9 37442533 37442775 -104828669 - L2 LINE L2 -1472 1842 1606 5740 24 2 5 chr9 37443046 37443675 -104827769 + SVA Other Other 757 1383 -3 497 241 0 9 chr9 37444529 37444637 -104826807 + MIR SINE MIR 38 144 -118 2409 62 7 26 chr9 37444659 37444965 -104826479 + AluY SINE Alu 2 301 -10 32 0 0 0 chr9 37444977 37445009 -104826435 + AT_rich Low_complexity Low_complexity 1 32 0 2043 123 10 3 chr9 37445009 37445310 -104826134 + AluSp SINE Alu 1 303 -10 1251 281 118 5 chr9 37445333 37445750 -104825694 - LTR16B LTR ERVL 0 464 1 3926 89 67 13 chr9 37445934 37446484 -104824960 + LTR19B LTR ERV1 1 580 0 635 205 16 8 chr9 37446484 37446611 -104824833 + FLAM_C SINE Alu 5 132 -11 2248 314 40 36 chr9 37446635 37447552 -104823892 - ERVL LTR ERVL -483 5281 4369 2093 127 40 54 chr9 37447552 37447922 -104823522 - MLT1A1 LTR MaLR 0 365 1 2248 314 40 36 chr9 37447922 37448689 -104822755 - ERVL LTR ERVL -1395 4369 3606 2567 72 3 3 chr9 37448689 37449023 -104822421 + L1PA6 LINE L1 5821 6154 0 2248 314 40 36 chr9 37449023 37449185 -104822259 - ERVL LTR ERVL -2158 3606 2393 192 40 0 0 chr9 37449196 37449221 -104822223 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1603 269 35 40 chr9 37449245 37449725 -104821719 - ERVL LTR ERVL -2723 2273 1796 2584 279 65 43 chr9 37449811 37450737 -104820707 - ERVL LTR ERVL -3579 1417 472 1131 183 0 0 chr9 37450740 37450915 -104820529 + FAM SINE Alu 1 175 0 392 282 29 62 chr9 37451294 37451503 -104819941 - LTR16B LTR ERVL 0 464 263 1542 229 81 21 chr9 37451503 37451875 -104819569 + MSTD LTR MaLR 1 394 -2 1148 244 34 8 chr9 37451875 37452137 -104819307 - LTR16B LTR ERVL -195 269 1 265 280 21 54 chr9 37452139 37452232 -104819212 + MIR SINE MIR 161 250 -12 479 268 48 74 chr9 37452967 37453198 -104818246 + MLT1K LTR MaLR 3 227 -361 7815 113 21 18 chr9 37453238 37453837 -104817607 + Tigger3b DNA MER2_type 1 597 -2431 2624 49 0 7 chr9 37453837 37454145 -104817299 + AluY SINE Alu 1 306 -5 7815 113 21 18 chr9 37454145 37454772 -104816672 + Tigger3b DNA MER2_type 597 1231 0 316 115 262 0 chr9 37454772 37454833 -104816611 + Tigger4(Zombi) DNA MER2_type 2655 2731 0 2612 210 80 79 chr9 37454834 37455278 -104816166 + L1M4 LINE L1 2260 2702 -3444 6075 60 1 1 chr9 37455278 37456038 -104815406 + L1PA8 LINE L1 5412 6171 -1 2612 210 80 79 chr9 37456038 37456127 -104815317 + L1M4 LINE L1 2702 2789 -3357 1905 94 4 16 chr9 37456127 37456383 -104815061 + AluSx SINE Alu 51 303 -9 2612 210 80 79 chr9 37456383 37456602 -104814842 + L1M4 LINE L1 2789 3006 -3140 743 121 9 0 chr9 37456602 37456718 -104814726 + L1MB7 LINE L1 6049 6165 -19 2612 210 80 79 chr9 37456718 37457071 -104814373 + L1M4 LINE L1 3006 3368 -2778 1608 196 38 25 chr9 37457075 37457259 -104814185 - MLT1E LTR MaLR 0 593 402 2639 158 33 56 chr9 37457259 37457773 -104813671 + MLT1D LTR MaLR 4 505 0 1608 196 38 25 chr9 37457773 37457904 -104813540 - MLT1E LTR MaLR -191 402 274 4031 206 74 54 chr9 37457904 37458739 -104812705 + L1M4 LINE L1 3988 4857 -1289 579 152 0 0 chr9 37458739 37458838 -104812606 - L1MA10 LINE L1 -2 6332 6234 4031 206 74 54 chr9 37458838 37459227 -104812217 + L1M4 LINE L1 4857 5237 -909 1121 154 99 41 chr9 37459227 37459448 -104811996 - AluJo SINE Alu -78 234 1 1424 173 69 49 chr9 37459673 37459979 -104811465 + AluJb SINE Alu 1 312 0 775 150 8 0 chr9 37460043 37460170 -104811274 + FLAM_C SINE Alu 5 132 -1 365 136 0 0 chr9 37460825 37460884 -104810560 + Alu SINE Alu 242 300 -2 704 160 0 0 chr9 37461078 37461184 -104810260 - FLAM_C SINE Alu -36 107 2 2232 97 7 3 chr9 37461407 37461696 -104809748 + AluSx SINE Alu 1 290 -22 224 301 88 35 chr9 37462141 37462254 -104809190 + L2 LINE L2 3114 3232 -40 2071 103 29 0 chr9 37462291 37462563 -104808881 - AluSx SINE Alu -32 280 1 331 340 7 20 chr9 37462928 37463078 -104808366 + MIR SINE MIR 19 166 -96 212 219 0 0 chr9 37464707 37464748 -104806696 - L2 LINE L2 -17 3255 3215 249 327 9 35 chr9 37465566 37465679 -104805765 + L2 LINE L2 2926 3035 -237 184 288 17 0 chr9 37465753 37465812 -104805632 - L2 LINE L2 0 3272 3213 623 88 0 0 chr9 37467541 37467621 -104803823 + FLAM_A SINE Alu 30 109 -33 592 220 95 18 chr9 37469554 37469722 -104801722 + AluJo SINE Alu 1 181 -131 467 130 169 0 chr9 37469757 37469834 -104801610 + FLAM_A SINE Alu 21 110 -32 1194 170 3 156 chr9 37469943 37470290 -104801154 - AluJo SINE Alu -7 295 2 746 261 63 34 chr9 37470503 37470741 -104800703 - MER112 DNA MER1_type -8 252 8 223 278 48 103 chr9 37472086 37472472 -104798972 - L2 LINE L2 -114 3158 2726 2498 81 0 0 chr9 37472610 37472918 -104798526 + AluY SINE Alu 2 309 -2 570 221 18 0 chr9 37474222 37474366 -104797078 + FLAM_A SINE Alu 2 147 0 370 259 65 53 chr9 37475184 37475354 -104796090 + MER20B DNA MER1_type 5 176 -607 2536 67 0 0 chr9 37475883 37476182 -104795262 + AluSc SINE Alu 1 299 -10 587 158 97 2 chr9 37476224 37476348 -104795096 - MER20 DNA MER1_type -2 217 81 1014 173 18 0 chr9 37477249 37477417 -104794027 - FRAM SINE Alu -5 171 1 307 322 90 9 chr9 37477420 37477631 -104793813 + L2 LINE L2 1767 1994 -1320 832 284 202 19 chr9 37477727 37478410 -104793034 + L2 LINE L2 1973 2780 -534 390 296 43 12 chr9 37479172 37479334 -104792110 + MIR3 SINE MIR 36 202 -6 22 0 0 0 chr9 37484986 37485008 -104786436 + AT_rich Low_complexity Low_complexity 1 22 0 670 233 218 5 chr9 37486461 37486667 -104784777 - MIR SINE MIR -10 252 3 191 283 100 0 chr9 37486900 37486960 -104784484 - L2 LINE L2 -2855 459 394 219 331 56 28 chr9 37487253 37487395 -104784049 + MIR SINE MIR 104 249 -13 506 280 212 40 chr9 37487665 37487807 -104783637 + L3 LINE CR1 816 932 -645 2306 118 0 13 chr9 37487807 37488122 -104783322 + AluSx SINE Alu 1 311 -1 506 280 212 40 chr9 37488122 37488451 -104782993 + L3 LINE CR1 932 1368 -209 1442 95 5 38 chr9 37489322 37489532 -104781912 - AluSg/x SINE Alu 0 312 110 343 246 104 45 chr9 37490451 37490585 -104780859 - MIR SINE MIR -5 257 116 515 335 0 0 chr9 37491034 37491210 -104780234 + C-rich Low_complexity Low_complexity 3 178 0 1349 133 4 0 chr9 37491360 37504824 -104766620 + ALR/Alpha Satellite centromeric 1 13516 -1 625 220 95 18 chr9 37505923 37506091 -104765353 + AluJo SINE Alu 1 181 -131 484 130 169 0 chr9 37506126 37506203 -104765241 + FLAM_A SINE Alu 21 110 -32 1251 176 3 150 chr9 37506312 37506659 -104764785 - AluJo SINE Alu -5 297 2 690 261 63 34 chr9 37506872 37507110 -104764334 - MER112 DNA MER1_type -8 252 8 380 264 161 35 chr9 37507705 37507879 -104763565 - L1ME4a LINE L1 -195 5926 5731 303 284 47 100 chr9 37508455 37508841 -104762603 - L2 LINE L2 -114 3158 2726 261 327 115 59 chr9 37508839 37508979 -104762465 + L2 LINE L2 2301 2432 -882 * 2518 81 0 0 chr9 37508979 37509287 -104762157 + AluY SINE Alu 2 309 -2 261 327 115 59 chr9 37509287 37509485 -104761959 + L2 LINE L2 2432 2658 -656 599 221 18 0 chr9 37510591 37510735 -104760709 + FLAM_A SINE Alu 2 147 0 329 259 65 53 chr9 37511553 37511723 -104759721 + MER20B DNA MER1_type 5 176 -607 2548 67 0 0 chr9 37512252 37512551 -104758893 + AluSc SINE Alu 1 299 -10 553 158 97 2 chr9 37512593 37512717 -104758727 - MER20 DNA MER1_type -2 217 81 1037 173 18 0 chr9 37513618 37513786 -104757658 - FRAM SINE Alu -5 171 1 371 327 89 9 chr9 37513789 37514003 -104757441 + L2 LINE L2 1767 1997 -1317 1092 284 202 19 chr9 37514096 37514779 -104756665 + L2 LINE L2 1973 2780 -534 461 296 43 12 chr9 37515541 37515703 -104755741 + MIR3 SINE MIR 36 202 -6 22 0 0 0 chr9 37521355 37521377 -104750067 + AT_rich Low_complexity Low_complexity 1 22 0 670 233 218 5 chr9 37522830 37523036 -104748408 - MIR SINE MIR -10 252 3 191 283 100 0 chr9 37523269 37523329 -104748115 - L2 LINE L2 -2855 459 394 219 331 56 28 chr9 37523622 37523764 -104747680 + MIR SINE MIR 104 249 -13 280 242 197 15 chr9 37524034 37524166 -104747278 + L3 LINE CR1 816 971 -606 2251 101 31 0 chr9 37524176 37524464 -104746980 + AluSq SINE Alu 1 297 -16 413 273 55 0 chr9 37524536 37524646 -104746798 - MIR SINE MIR -136 126 11 2169 55 70 4 chr9 37524827 37525100 -104746344 + AluY SINE Alu 3 293 -18 1633 189 19 92 chr9 37525148 37525317 -104746127 - L1ME LINE L1 -406 5760 5580 2497 82 0 0 chr9 37525317 37525620 -104745824 - AluY SINE Alu -8 303 1 1633 189 19 92 chr9 37525620 37525779 -104745665 - L1ME LINE L1 -586 5580 5411 2213 134 0 0 chr9 37525779 37526086 -104745358 - AluSx SINE Alu -5 307 1 2124 121 0 0 chr9 37526096 37526376 -104745068 - AluSx SINE Alu -16 296 17 1633 189 19 92 chr9 37526376 37526516 -104744928 - L1ME LINE L1 -764 5402 5317 2022 144 0 13 chr9 37526516 37526821 -104744623 - AluJb SINE Alu -11 301 1 1633 189 19 92 chr9 37526821 37526852 -104744592 - L1ME LINE L1 -849 5317 5285 201 348 0 33 chr9 37526959 37527140 -104744304 + C-rich Low_complexity Low_complexity 5 179 0 2510 70 7 0 chr9 37530492 37530794 -104740650 + AluSg SINE Alu 3 306 -4 1639 119 107 0 chr9 37530810 37531101 -104740343 + AluSx SINE Alu 14 330 0 4190 164 62 34 chr9 37531202 37531296 -104740148 + L1MB7 LINE L1 5081 5171 -1013 2620 63 0 0 chr9 37531296 37531598 -104739846 + AluSc SINE Alu 1 302 -7 4190 164 62 34 chr9 37531598 37531751 -104739693 + L1MB7 LINE L1 5171 5318 -866 1936 167 3 3 chr9 37531751 37532056 -104739388 + AluJo SINE Alu 1 305 -7 4190 164 62 34 chr9 37532056 37532884 -104738560 + L1MB7 LINE L1 5318 6165 -19 1658 176 42 11 chr9 37532894 37533247 -104738197 + L1MB8 LINE L1 5815 6178 0 822 174 0 7 chr9 37533254 37533398 -104738046 + FLAM_C SINE Alu 1 143 0 864 162 217 63 chr9 37533458 37533711 -104737733 - AluJb SINE Alu -9 293 2 2406 106 0 0 chr9 37534117 37534420 -104737024 - AluSx SINE Alu -9 303 1 1472 188 79 0 chr9 37534495 37534761 -104736683 + AluJo SINE Alu 1 287 -25 864 121 0 45 chr9 37535637 37535769 -104735675 - FLAM_C SINE Alu -17 126 1 324 274 14 0 chr9 37536512 37536585 -104734859 + MIR SINE MIR 30 103 -105 336 247 54 21 chr9 37536804 37536897 -104734547 + MIR SINE MIR 30 125 -83 190 196 174 0 chr9 37541419 37541465 -104729979 + L2 LINE L2 3000 3053 -219 1967 99 37 0 chr9 37542656 37542929 -104728515 + AluSx SINE Alu 1 283 -29 211 227 114 68 chr9 37542932 37543020 -104728424 - MER5A DNA MER1_type -66 123 32 269 184 350 29 chr9 37543725 37543828 -104727616 + MIR SINE MIR 16 151 -111 2251 114 0 0 chr9 37543952 37544251 -104727193 + AluSx SINE Alu 1 299 -13 1769 176 3 3 chr9 37544252 37544547 -104726897 + AluSx SINE Alu 2 296 -16 618 224 178 57 chr9 37544547 37545026 -104726418 + L2 LINE L2 2740 3277 -36 264 319 30 30 chr9 37545076 37545242 -104726202 + L2 LINE L2 2554 2719 -595 973 114 23 0 chr9 37545247 37545378 -104726066 - AluJb SINE Alu -178 134 1 345 103 35 0 chr9 37545432 37545490 -104725954 + Alu SINE Alu 1 60 -239 208 283 0 0 chr9 37546719 37546765 -104724679 + polypurine Low_complexity Low_complexity 1 46 0 583 224 72 0 chr9 37548415 37548540 -104722904 - MIR3 SINE MIR 0 208 75 322 177 13 127 chr9 37550942 37551021 -104720423 + MER91C DNA MER1_type 36 105 -35 208 274 140 89 chr9 37551388 37551545 -104719899 + MIR3 SINE MIR 21 185 -23 2371 102 3 0 chr9 37554229 37554532 -104716912 - AluSx SINE Alu -7 305 2 2235 90 28 3 chr9 37555758 37556046 -104715398 - AluSq SINE Alu -18 295 1 881 204 64 30 chr9 37558477 37558712 -104712732 + L1M4 LINE L1 793 1035 -5507 2872 78 92 5 chr9 37558712 37559124 -104712320 + LTR7 LTR ERV1 1 448 -2 11948 92 12 42 chr9 37559126 37561630 -104709814 + HERVH LTR ERV1 1 2318 -5395 7743 101 1 15 chr9 37561905 37563083 -104708361 + HERVH LTR ERV1 1835 2995 -4718 5841 93 3 2 chr9 37563062 37563915 -104707529 + HERVH LTR ERV1 3140 3993 -3720 * 4084 144 9 3 chr9 37563917 37564575 -104706869 + HERVH LTR ERV1 4488 5149 -2564 1340 118 38 0 chr9 37564576 37564788 -104706656 + HERVH LTR ERV1 5600 5819 -1894 * 2149 98 79 14 chr9 37564786 37565154 -104706290 + HERVH LTR ERV1 7322 7713 0 2239 83 246 6 chr9 37565154 37565515 -104705929 + LTR7 LTR ERV1 1 448 -2 468 208 58 52 chr9 37565517 37565671 -104705773 + L1M4 LINE L1 1031 1185 -5357 747 192 8 0 chr9 37565684 37565804 -104705640 - FLAM_C SINE Alu -22 121 1 1848 210 72 44 chr9 37565804 37565872 -104705572 + L1M4 LINE L1 1178 1243 -5403 1497 206 17 7 chr9 37565872 37566164 -104705280 + AluJo SINE Alu 9 303 -9 1848 210 72 44 chr9 37566164 37566831 -104704613 + L1M4 LINE L1 1243 1917 -4729 2463 223 33 0 chr9 37567447 37568052 -104703392 + L1 LINE L1 3549 4173 -1973 630 175 0 0 chr9 37568052 37568149 -104703295 + AluJ/FLAM SINE Alu 1 97 -215 1510 200 35 0 chr9 37568157 37568472 -104702972 + MST-int LTR MaLR 124 449 -1202 4881 68 15 48 chr9 37568473 37568799 -104702645 - MER4A LTR ERV1 0 664 371 2002 127 9 64 chr9 37568799 37569129 -104702315 + AluSx SINE Alu 1 312 0 4881 68 15 48 chr9 37569129 37569489 -104701955 - MER4A LTR ERV1 -293 371 1 13650 148 95 45 chr9 37569493 37570156 -104701288 - MER4A-int LTR ERV1 0 6598 5970 2016 150 3 0 chr9 37570156 37570450 -104700994 + AluSx SINE Alu 1 295 -17 13650 148 95 45 chr9 37570450 37570618 -104700826 - MER4A-int LTR ERV1 -628 5970 5812 1954 161 0 23 chr9 37570618 37570922 -104700522 - AluSx SINE Alu -15 297 1 13650 148 95 45 chr9 37570922 37571572 -104699872 - MER4A-int LTR ERV1 -786 5812 5196 2183 161 0 0 chr9 37571572 37571883 -104699561 + AluSx SINE Alu 1 311 -1 13650 148 95 45 chr9 37571883 37572018 -104699426 - MER4A-int LTR ERV1 -1402 5196 5069 2448 88 0 0 chr9 37572018 37572314 -104699130 + AluSg SINE Alu 1 296 -14 13650 148 95 45 chr9 37572314 37572685 -104698759 - MER4A-int LTR ERV1 -1529 5069 4718 2351 106 0 0 chr9 37572685 37572977 -104698467 + AluSx SINE Alu 1 292 -20 13650 148 95 45 chr9 37572977 37574631 -104696813 - MER4A-int LTR ERV1 -1880 4718 1723 1863 162 0 25 chr9 37574631 37574945 -104696499 + AluSx SINE Alu 7 312 0 5107 83 44 31 chr9 37574979 37575705 -104695739 - L1PA11 LINE L1 0 6174 5436 1992 157 3 0 chr9 37575705 37575999 -104695445 - AluSx SINE Alu -17 295 1 5107 83 44 31 chr9 37575999 37576075 -104695369 - L1PA11 LINE L1 -738 5436 5362 865 168 41 15 chr9 37576075 37576272 -104695172 - MER4A-int LTR ERV1 -5043 1715 1514 1445 146 56 19 chr9 37576281 37576360 -104695084 - MER4-int LTR ERV1 -4312 2286 2211 2477 66 0 13 chr9 37576360 37576661 -104694783 + AluY SINE Alu 1 297 -14 1445 146 56 19 chr9 37576661 37576904 -104694540 - MER4-int LTR ERV1 -4387 2211 1952 226 177 0 81 chr9 37576926 37576988 -104694456 - LTR26 LTR ERV1 -68 535 479 4398 99 0 2 chr9 37576990 37577628 -104693816 - MER4-int LTR ERV1 -3094 4619 3995 2442 137 0 3 chr9 37577638 37578019 -104693425 - MER4-int LTR ERV1 -3977 3736 3357 7433 191 85 85 chr9 37578019 37580849 -104690595 - MER4-int LTR ERV1 -4883 2830 1 1206 177 77 107 chr9 37580856 37581313 -104690131 - LTR7 LTR ERV1 -7 443 1 1860 177 37 66 chr9 37581313 37581809 -104689635 - MER4A-int LTR ERV1 -4593 2944 2435 360 0 0 0 chr9 37581809 37581849 -104689595 + (CA)n Simple_repeat Simple_repeat 2 41 0 1860 177 37 66 chr9 37581849 37581909 -104689535 - MER4A-int LTR ERV1 -5102 2435 1161 734 121 0 0 chr9 37581912 37582011 -104689433 + AluS SINE Alu 2 100 -213 2159 112 34 0 chr9 37582011 37582306 -104689138 + AluSx SINE Alu 1 305 -7 2111 125 19 72 chr9 37582306 37582390 -104689054 - MER83 LTR ERV1 -53 395 308 4138 80 18 11 chr9 37582390 37582940 -104688504 + MER41A LTR ERV1 1 554 0 2111 125 19 72 chr9 37582940 37583272 -104688172 - MER83 LTR ERV1 -140 308 1 2449 95 99 33 chr9 37583277 37583835 -104687609 - MER4A-int LTR ERV1 -5952 646 1 4619 93 16 31 chr9 37583838 37584512 -104686932 - MER4A LTR ERV1 0 664 1 5314 190 25 59 chr9 37584516 37585492 -104685952 + MSTB1-int LTR MaLR 451 1376 -275 1521 186 4 4 chr9 37585492 37585761 -104685683 - AluJo SINE Alu -41 271 3 5314 190 25 59 chr9 37585761 37586026 -104685418 + MSTB1-int LTR MaLR 1376 1649 -2 2038 137 109 0 chr9 37586118 37586484 -104684960 + MSTB1 LTR MaLR 27 432 0 1115 175 10 10 chr9 37586568 37586762 -104684682 - AluJo SINE Alu -118 194 1 2283 127 0 0 chr9 37586772 37587072 -104684372 - AluSg SINE Alu -10 300 1 308 338 91 32 chr9 37587614 37587833 -104683611 + L1MEd LINE L1 204 435 -5684 704 284 58 47 chr9 37587919 37588053 -104683391 + L1MEd LINE L1 457 588 -5531 2109 133 0 0 chr9 37588053 37588347 -104683097 + AluSx SINE Alu 1 294 -18 243 0 0 0 chr9 37588351 37588378 -104683066 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 704 284 58 47 chr9 37588378 37588618 -104682826 + L1MEd LINE L1 590 840 -5279 307 330 20 10 chr9 37588655 37588755 -104682689 - L2 LINE L2 -189 3083 2983 2267 93 23 10 chr9 37588756 37589056 -104682388 + AluY SINE Alu 1 304 -7 699 345 96 43 chr9 37589117 37589812 -104681632 - L2 LINE L2 -340 2974 2243 491 244 94 38 chr9 37589926 37590086 -104681358 + L1ME4a LINE L1 5654 5830 -291 2092 128 3 16 chr9 37590086 37590222 -104681222 + AluSx SINE Alu 1 137 -175 2231 128 0 0 chr9 37590222 37590526 -104680918 + AluSq SINE Alu 1 304 -9 2092 128 3 16 chr9 37590526 37590695 -104680749 + AluSx SINE Alu 137 302 -10 491 244 94 38 chr9 37590695 37590747 -104680697 + L1ME4a LINE L1 5830 5878 -243 979 87 0 0 chr9 37590781 37590896 -104680548 + AluSg1 SINE Alu 29 143 -166 2087 83 0 0 chr9 37590897 37591149 -104680295 + AluSg SINE Alu 2 253 -57 1213 110 0 0 chr9 37591160 37591351 -104680093 + AluSg1 SINE Alu 119 309 0 2032 109 42 7 chr9 37591395 37591680 -104679764 + AluSg SINE Alu 3 297 -13 184 287 11 85 chr9 37592910 37593004 -104678440 - L2 LINE L2 -147 3125 3039 448 111 0 0 chr9 37593145 37593208 -104678236 + MLT1A2 LTR MaLR 266 328 -46 189 107 0 0 chr9 37593209 37593237 -104678207 + (A)n Simple_repeat Simple_repeat 1 28 0 21 36 0 0 chr9 37593310 37593338 -104678106 + AT_rich Low_complexity Low_complexity 1 28 0 977 133 0 0 chr9 37593465 37593608 -104677836 + FLAM_C SINE Alu 1 143 0 1783 143 0 4 chr9 37593817 37594075 -104677369 + AluSq SINE Alu 1 257 -56 1846 166 7 7 chr9 37594169 37594465 -104676979 + AluJb SINE Alu 1 296 -16 982 210 20 15 chr9 37594793 37594988 -104676456 - AluJo SINE Alu -10 302 107 490 288 0 0 chr9 37594988 37595099 -104676345 - Charlie8 DNA MER1_type -2144 273 163 2353 75 0 0 chr9 37595183 37595491 -104675953 + AluY SINE Alu 2 309 0 977 330 90 44 chr9 37595565 37596591 -104674853 + L2 LINE L2 2200 3272 0 271 341 179 8 chr9 37596593 37596716 -104674728 - MIR3 SINE MIR -48 160 17 534 198 41 169 chr9 37596980 37597016 -104674428 - MIR SINE MIR -42 220 181 4770 39 15 5 chr9 37597016 37597601 -104673843 - LTR10C LTR ERV1 0 591 1 534 198 41 169 chr9 37597601 37597642 -104673802 - MIR SINE MIR -81 181 136 661 228 8 0 chr9 37597642 37597765 -104673679 + FLAM_A SINE Alu 1 124 -9 1982 142 3 20 chr9 37597768 37598071 -104673373 + AluJb SINE Alu 2 299 -13 534 198 41 169 chr9 37598071 37598231 -104673213 - MIR SINE MIR -128 134 9 234 239 0 0 chr9 37599099 37599145 -104672299 + GA-rich Low_complexity Low_complexity 2 47 0 1376 182 62 120 chr9 37602714 37602791 -104668653 - MLT1D LTR MaLR 0 505 425 1547 165 24 62 chr9 37602791 37603082 -104668362 + AluJb SINE Alu 3 282 -30 1376 182 62 120 chr9 37603082 37603317 -104668127 - MLT1D LTR MaLR -80 425 178 2386 61 0 10 chr9 37603317 37603611 -104667833 - AluY SINE Alu -8 303 13 2375 99 3 7 chr9 37603611 37603915 -104667529 - AluSp SINE Alu -10 303 1 1376 182 62 120 chr9 37603915 37604003 -104667441 - MLT1D LTR MaLR -326 179 139 1780 148 31 21 chr9 37604003 37604294 -104667150 + AluSx SINE Alu 1 294 -18 1376 182 62 120 chr9 37604294 37604422 -104667022 - MLT1D LTR MaLR -366 139 5 216 292 231 36 chr9 37604765 37604957 -104666487 + L2 LINE L2 2264 2417 -897 1994 120 33 0 chr9 37604957 37605258 -104666186 + AluSx SINE Alu 1 310 0 216 292 231 36 chr9 37605258 37605372 -104666072 + L2 LINE L2 2417 2631 -683 1487 186 44 24 chr9 37605454 37605749 -104665695 + 7SLRNA srpRNA srpRNA 1 301 -19 1839 156 0 17 chr9 37605905 37606193 -104665251 - AluJo SINE Alu -19 293 11 2394 76 0 10 chr9 37606250 37606551 -104664893 + AluY SINE Alu 1 298 -13 285 285 15 29 chr9 37606569 37606706 -104664738 + L1ME4a LINE L1 5894 6028 -93 1840 171 0 31 chr9 37606706 37607028 -104664416 - AluJb SINE Alu 0 312 1 2175 52 99 0 chr9 37608100 37608372 -104663072 - AluY SINE Alu -12 299 1 188 253 108 48 chr9 37608625 37608708 -104662736 - MIR3 SINE MIR -39 169 82 5955 109 25 20 chr9 37608712 37608782 -104662662 + L1PB1 LINE L1 4924 4992 -1159 1975 122 20 17 chr9 37608782 37609078 -104662366 + AluSx SINE Alu 1 297 -15 5955 109 25 20 chr9 37609078 37609865 -104661579 + L1PB1 LINE L1 4992 5788 -363 1841 114 0 0 chr9 37609865 37610110 -104661334 + AluSx SINE Alu 63 307 -5 5955 109 25 20 chr9 37610110 37610475 -104660969 + L1PB1 LINE L1 5788 6150 -1 5317 149 86 21 chr9 37610637 37611105 -104660339 + Ricksha_b DNA DNA 69 506 -2760 2243 98 7 0 chr9 37611105 37611401 -104660043 - AluSp SINE Alu -15 298 1 5317 149 86 21 chr9 37611401 37612093 -104659351 + Ricksha_b DNA DNA 506 1654 -12 31 68 0 0 chr9 37612222 37612281 -104659163 + AT_rich Low_complexity Low_complexity 1 59 0 669 243 68 9 chr9 37613892 37614114 -104657330 + L1ME1 LINE L1 5927 6161 -5 2287 98 0 16 chr9 37614676 37614981 -104656463 + AluY SINE Alu 12 311 0 1928 171 7 0 chr9 37616042 37616341 -104655103 + AluJo SINE Alu 8 308 -4 491 270 9 17 chr9 37617945 37618060 -104653384 - MER81 DNA DNA 0 114 1 247 211 0 0 chr9 37619918 37619970 -104651474 - Charlie1 DNA MER1_type 0 2761 2710 703 133 80 18 chr9 37620599 37620712 -104650732 + FLAM_C SINE Alu 3 122 -21 2285 116 0 0 chr9 37621067 37621361 -104650083 - AluSx SINE Alu -18 294 1 1983 85 0 0 chr9 37622092 37622339 -104649105 + AluSx SINE Alu 56 302 -10 797 155 0 0 chr9 37622342 37622458 -104648986 + AluJo/FLAM SINE Alu 1 116 -186 1448 138 165 8 chr9 37622458 37622719 -104648725 - AluYb8 SINE Alu -16 302 1 183 80 0 0 chr9 37622775 37622800 -104648644 + (A)n Simple_repeat Simple_repeat 1 25 0 899 264 50 0 chr9 37624894 37625114 -104646330 + MIR SINE MIR 5 235 -27 2442 92 3 0 chr9 37625638 37625944 -104645500 - AluSq SINE Alu -5 308 2 476 172 32 11 chr9 37626060 37626153 -104645291 - L2 LINE L2 0 3313 3219 2062 111 7 14 chr9 37626632 37626929 -104644515 - AluSx SINE Alu -17 295 1 234 363 35 9 chr9 37627205 37627318 -104644126 + L3b LINE CR1 1115 1230 -353 198 0 0 0 chr9 37627487 37627509 -104643935 + (T)n Simple_repeat Simple_repeat 1 22 0 23 0 0 0 chr9 37628175 37628198 -104643246 + GC_rich Low_complexity Low_complexity 1 23 0 211 256 0 0 chr9 37628740 37628779 -104642665 + (CGG)n Simple_repeat Simple_repeat 2 40 0 292 320 0 0 chr9 37630734 37630812 -104640632 - MIR SINE MIR -64 144 67 180 229 146 0 chr9 37633873 37633921 -104637523 - MIR SINE MIR -69 139 85 994 137 0 82 chr9 37633948 37634131 -104637313 - FRAM SINE Alu -16 160 1 1712 207 25 103 chr9 37636457 37636634 -104634810 + L1MB8 LINE L1 4897 5086 -1080 1677 84 14 0 chr9 37636634 37636849 -104634595 + AluSg/x SINE Alu 86 303 -9 1712 207 25 103 chr9 37636849 37636995 -104634449 + L1MB8 LINE L1 5086 5242 -924 2428 65 7 3 chr9 37636995 37637305 -104634139 + AluY SINE Alu 1 311 0 1712 207 25 103 chr9 37637305 37637327 -104634117 + L1MB8 LINE L1 5242 5264 -902 1566 159 10 54 chr9 37637327 37637622 -104633822 + AluJo SINE Alu 12 293 -19 1712 207 25 103 chr9 37637622 37637739 -104633705 + L1MB8 LINE L1 5264 5388 -778 2030 144 0 13 chr9 37637739 37638044 -104633400 + AluJb SINE Alu 1 301 -11 1712 207 25 103 chr9 37638044 37638184 -104633260 + L1MB8 LINE L1 5388 5537 -629 2127 121 0 0 chr9 37638184 37638464 -104632980 + AluSx SINE Alu 17 296 -16 2220 134 0 0 chr9 37638474 37638781 -104632663 + AluSx SINE Alu 1 307 -5 1712 207 25 103 chr9 37638781 37638940 -104632504 + L1MB8 LINE L1 5546 5580 -586 2505 82 0 0 chr9 37638940 37639243 -104632201 + AluY SINE Alu 1 303 -8 1712 207 25 103 chr9 37639243 37639412 -104632032 + L1MB8 LINE L1 5580 5760 -406 581 37 24 12 chr9 37639460 37639542 -104631902 - AluSg/x SINE Alu -19 291 209 216 0 0 0 chr9 37639565 37639589 -104631855 + (A)n Simple_repeat Simple_repeat 1 24 0 1944 114 23 4 chr9 37639605 37639901 -104631543 + AluSx SINE Alu 14 314 0 4194 165 62 34 chr9 37640002 37640096 -104631348 + L1MB7 LINE L1 5081 5171 -1013 2618 66 0 0 chr9 37640096 37640400 -104631044 + AluSc SINE Alu 1 304 -5 4194 165 62 34 chr9 37640400 37640553 -104630891 + L1MB7 LINE L1 5171 5318 -866 1943 167 3 3 chr9 37640553 37640858 -104630586 + AluJo SINE Alu 1 305 -7 4194 165 62 34 chr9 37640858 37641686 -104629758 + L1MB7 LINE L1 5318 6165 -19 1527 181 42 11 chr9 37641696 37642049 -104629395 + L1MB8 LINE L1 5815 6178 0 827 174 0 7 chr9 37642056 37642200 -104629244 + FLAM_C SINE Alu 1 143 0 927 153 213 59 chr9 37642260 37642514 -104628930 - AluJo SINE Alu -19 293 1 2420 105 0 0 chr9 37642919 37643223 -104628221 - AluSx SINE Alu -8 304 1 1476 188 79 0 chr9 37643298 37643564 -104627880 + AluJo SINE Alu 1 287 -25 868 121 0 45 chr9 37644440 37644572 -104626872 - FLAM_C SINE Alu -17 126 1 305 274 14 0 chr9 37645315 37645388 -104626056 + MIR SINE MIR 30 103 -105 311 247 54 21 chr9 37645607 37645700 -104625744 + MIR SINE MIR 30 125 -83 1989 99 37 0 chr9 37651459 37651732 -104619712 + AluSx SINE Alu 1 283 -29 188 250 91 45 chr9 37651735 37651823 -104619621 - MER5A DNA MER1_type -66 123 32 235 204 330 10 chr9 37652528 37652631 -104618813 + MIR SINE MIR 16 151 -111 2289 110 0 0 chr9 37652755 37653055 -104618389 + AluSx SINE Alu 1 300 -12 2007 149 0 3 chr9 37653056 37653352 -104618092 + AluSx SINE Alu 2 296 -16 542 231 176 52 chr9 37653353 37653818 -104617626 + L2 LINE L2 2740 3263 -50 245 313 30 30 chr9 37653885 37654051 -104617393 + L2 LINE L2 2554 2719 -595 976 114 23 0 chr9 37654056 37654187 -104617257 - AluJb SINE Alu -178 134 1 2308 104 0 0 chr9 37654241 37654539 -104616905 + AluSg SINE Alu 1 298 -12 2097 123 7 3 chr9 37654827 37655120 -104616324 - AluSc SINE Alu -15 294 1 351 354 70 0 chr9 37655125 37655283 -104616161 + L2 LINE L2 3104 3272 0 212 224 60 30 chr9 37659534 37659601 -104611843 - MIR3 SINE MIR -41 167 99 189 0 0 0 chr9 37659817 37659838 -104611606 + (CAA)n Simple_repeat Simple_repeat 1 21 0 247 261 15 0 chr9 37660267 37660332 -104611112 + (CA)n Simple_repeat Simple_repeat 1 66 0 32 0 0 0 chr9 37660591 37660623 -104610821 + AT_rich Low_complexity Low_complexity 1 32 0 836 143 0 0 chr9 37661140 37661266 -104610178 + FLAM_C SINE Alu 1 126 -7 216 97 0 0 chr9 37661269 37661300 -104610144 + (CATA)n Simple_repeat Simple_repeat 2 32 0 1835 169 10 16 chr9 37662768 37663082 -104608362 + AluJb SINE Alu 1 312 0 219 356 23 0 chr9 37664694 37664781 -104606663 + L3 LINE CR1 1459 1547 -30 235 284 72 98 chr9 37665395 37665659 -104605785 + L2 LINE L2 2999 3255 -17 1788 148 7 7 chr9 37667137 37667407 -104604037 + AluSx SINE Alu 21 290 -22 307 191 76 19 chr9 37667417 37667522 -104603922 - L1ME4a LINE L1 -20 6101 5991 688 205 0 8 chr9 37667534 37667661 -104603783 - FLAM_A SINE Alu -7 126 1 356 153 0 32 chr9 37667786 37667960 -104603484 - L1MC4a LINE L1 -93 6028 5843 1123 139 106 14 chr9 37667960 37668088 -104603356 - MER30 DNA MER1_type 0 230 74 2175 98 34 0 chr9 37668088 37668385 -104603059 - AluY SINE Alu -4 307 1 1123 139 106 14 chr9 37668385 37668464 -104602980 - MER30 DNA MER1_type -156 74 4 356 153 0 32 chr9 37668464 37668605 -104602839 - L1MC4a LINE L1 -278 5843 5693 2149 98 0 54 chr9 37668605 37668921 -104602523 - AluSg SINE Alu -11 299 1 356 153 0 32 chr9 37668921 37668940 -104602504 - L1MC4a LINE L1 -428 5693 5673 1912 176 3 0 chr9 37668940 37669236 -104602208 - AluJo SINE Alu -15 297 1 356 153 0 32 chr9 37669236 37669251 -104602193 - L1MC4a LINE L1 -448 5673 5658 809 130 35 59 chr9 37669253 37669422 -104602022 - L1PA15 LINE L1 0 6165 6001 1633 148 111 7 chr9 37669722 37669992 -104601452 - AluJb SINE Alu -14 298 1 1729 159 28 14 chr9 37670087 37670370 -104601074 + AluJo SINE Alu 1 287 -25 2370 112 0 0 chr9 37671181 37671484 -104599960 - AluSx SINE Alu -9 303 1 1724 183 0 11 chr9 37671499 37671784 -104599660 - AluJo SINE Alu -24 288 7 1659 211 0 7 chr9 37671829 37672127 -104599317 - AluJb SINE Alu -16 296 1 2246 113 3 0 chr9 37672129 37672420 -104599024 - AluSq SINE Alu -21 292 1 1731 170 3 14 chr9 37672430 37672718 -104598726 - AluJo SINE Alu -23 289 5 323 269 31 8 chr9 37672727 37672857 -104598587 - L1ME4a LINE L1 -281 5889 5757 219 281 148 39 chr9 37672894 37673022 -104598422 + L3b LINE CR1 1324 1465 -118 839 149 0 47 chr9 37673045 37673193 -104598251 - FLAM_C SINE Alu -2 141 1 1295 188 36 10 chr9 37673200 37673503 -104597941 - L1MA4 LINE L1 0 6300 5990 2160 124 0 0 chr9 37674444 37674742 -104596702 - AluSx SINE Alu -14 298 1 232 370 22 7 chr9 37674813 37674948 -104596496 + MIR SINE MIR 5 141 -121 1596 149 100 0 chr9 37675190 37675343 -104596101 - AluY SINE Alu -24 287 151 1502 144 4 4 chr9 37675343 37675572 -104595872 - AluSg/x SINE Alu -11 299 71 1918 62 0 9 chr9 37675572 37675798 -104595646 - AluY SINE Alu -17 294 70 1596 149 100 0 chr9 37675798 37675904 -104595540 - AluY SINE Alu -159 152 1 1086 209 47 5 chr9 37675906 37676117 -104595327 - AluJo SINE Alu -92 220 1 2193 129 0 29 chr9 37676753 37677064 -104594380 + AluSx SINE Alu 1 302 -10 343 278 120 89 chr9 37677261 37677284 -104594160 - L2 LINE L2 0 3313 3292 2211 120 0 0 chr9 37677284 37677599 -104593845 + AluSx SINE Alu 1 312 0 343 278 120 89 chr9 37677599 37677957 -104593487 - L2 LINE L2 -21 3292 2920 542 57 0 0 chr9 37678031 37678101 -104593343 - AluS SINE Alu -235 77 8 1275 133 9 44 chr9 37678101 37678326 -104593118 + AluSq SINE Alu 86 302 -11 292 358 26 20 chr9 37678680 37678831 -104592613 - L2 LINE L2 -9 3263 3112 500 184 5 139 chr9 37679173 37679246 -104592198 - MER104 DNA MER2_type -1722 176 95 1865 157 48 3 chr9 37679246 37679540 -104591904 + AluJb SINE Alu 2 308 -4 500 184 5 139 chr9 37679540 37679636 -104591808 - MER104 DNA MER2_type -1803 95 35 2196 108 17 0 chr9 37679636 37679933 -104591511 + AluSx SINE Alu 10 311 -1 500 184 5 139 chr9 37679933 37679963 -104591481 - MER104 DNA MER2_type -1863 35 3 245 245 283 0 chr9 37679966 37680072 -104591372 - MIR SINE MIR -6 256 121 1860 167 0 23 chr9 37680527 37680832 -104590612 + AluJb SINE Alu 1 298 -14 195 42 0 0 chr9 37681750 37681774 -104589670 + (TTTTTG)n Simple_repeat Simple_repeat 5 28 0 1582 196 16 19 chr9 37681835 37682147 -104589297 + AluJb SINE Alu 1 311 -1 264 211 78 33 chr9 37682413 37682503 -104588941 + MIR SINE MIR 68 161 -101 2151 127 16 0 chr9 37682575 37682882 -104588562 + AluSx SINE Alu 1 312 0 823 197 27 69 chr9 37682899 37683087 -104588357 + LTR8A LTR ERV1 548 727 0 204 67 0 0 chr9 37683459 37683489 -104587955 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 6510 111 45 18 chr9 37683491 37685778 -104585666 - SVA Other Other -520 1385 2 207 0 0 0 chr9 37685778 37685801 -104585643 + (GGAA)n Simple_repeat Simple_repeat 3 25 0 306 220 30 0 chr9 37685801 37685901 -104585543 + GA-rich Low_complexity Low_complexity 1 103 0 1947 161 10 3 chr9 37686658 37686968 -104584476 + AluSx SINE Alu 1 312 0 1389 148 0 5 chr9 37686974 37687190 -104584254 + MER4D LTR ERV1 10 224 -679 1432 160 12 4 chr9 37687216 37687460 -104583984 + MER4D LTR ERV1 441 686 -217 2566 141 7 32 chr9 37687467 37687870 -104583574 - LTR9 LTR ERV1 0 612 220 35343 118 93 90 chr9 37687952 37690686 -104580758 - HUERS-P3b LTR ERV1 -473 6945 4222 2389 99 0 3 chr9 37690686 37690990 -104580454 - AluSp SINE Alu -10 303 1 35343 118 93 90 chr9 37690990 37691976 -104579468 - HUERS-P3b LTR ERV1 -3196 4222 3241 2165 105 27 0 chr9 37691976 37692271 -104579173 - AluSx SINE Alu -9 303 1 35343 118 93 90 chr9 37692271 37694386 -104577058 - HUERS-P3b LTR ERV1 -4177 3241 1080 2366 89 0 35 chr9 37694386 37694699 -104576745 + AluSg SINE Alu 1 302 -8 35343 118 93 90 chr9 37694699 37695762 -104575682 - HUERS-P3b LTR ERV1 -6338 1080 22 3590 123 69 22 chr9 37695789 37696368 -104575076 - LTR9 LTR ERV1 -6 606 1 1412 87 78 5 chr9 37696376 37696582 -104574862 + MER4D LTR ERV1 652 872 0 242 190 52 35 chr9 37696853 37696911 -104574533 - 7SK RNA RNA -118 75 17 186 189 0 0 chr9 37696985 37697022 -104574422 + (CATATA)n Simple_repeat Simple_repeat 2 38 0 1818 186 0 0 chr9 37697784 37698090 -104573354 - AluJo SINE Alu -6 306 1 2087 148 0 0 chr9 37698224 37698527 -104572917 - AluSx SINE Alu -9 303 1 2077 135 130 18 chr9 37698594 37698979 -104572465 + MSTA LTR MaLR 1 428 0 2200 155 58 22 chr9 37699140 37699553 -104571891 + MSTA LTR MaLR 1 428 0 2018 142 3 0 chr9 37699553 37699876 -104571568 + MSTA-int LTR MaLR 1 324 -1327 29978 44 7 6 chr9 37699880 37703813 -104567631 - L1PA5 LINE L1 0 6154 2214 2515 70 0 0 chr9 37703813 37704111 -104567333 - AluY SINE Alu -13 298 1 29978 44 7 6 chr9 37704111 37704628 -104566816 - L1PA5 LINE L1 -3940 2214 1699 7691 168 27 8 chr9 37704630 37705943 -104565501 + MSTA-int LTR MaLR 315 1651 0 2277 136 97 0 chr9 37705943 37706333 -104565111 + MSTA LTR MaLR 1 428 0 2567 172 8 30 chr9 37706377 37706901 -104564543 - L1MB7 LINE L1 -1 6183 5672 1698 153 6 53 chr9 37706921 37707242 -104564202 + AluJb SINE Alu 1 306 -6 3313 171 117 60 chr9 37707242 37707618 -104563826 - L1MB5 LINE L1 -9 6165 5812 2345 96 0 0 chr9 37707618 37707910 -104563534 + AluSc SINE Alu 6 297 -12 3313 171 117 60 chr9 37707910 37708277 -104563167 - L1MB5 LINE L1 -362 5812 5467 1472 161 0 117 chr9 37708277 37708498 -104562946 - AluJo SINE Alu 0 302 133 324 0 0 0 chr9 37708498 37708534 -104562910 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 1472 161 0 117 chr9 37708534 37708654 -104562790 - AluJo SINE Alu -169 133 1 3313 171 117 60 chr9 37708654 37709026 -104562418 - L1MB5 LINE L1 -707 5467 4964 2765 89 38 33 chr9 37709430 37709856 -104561588 - MSTA LTR MaLR 0 428 1 2027 136 4 0 chr9 37710075 37710383 -104561061 - AluSx SINE Alu 0 309 1 2061 136 3 3 chr9 37710410 37710697 -104560747 - AluSx SINE Alu -25 287 1 777 175 0 0 chr9 37710979 37711105 -104560339 + AluJ SINE Alu 2 127 -175 962 228 0 0 chr9 37711268 37711461 -104559983 - MER3 DNA MER1_type -5 204 12 2301 105 0 0 chr9 37711550 37711844 -104559600 - AluSx SINE Alu -18 294 1 647 177 15 23 chr9 37711923 37712053 -104559391 - FLAM_A SINE Alu -3 130 2 783 292 104 11 chr9 37712420 37712762 -104558682 - L1MC4a LINE L1 -530 5640 5496 534 165 0 0 chr9 37712832 37712923 -104558521 + AluJ SINE Alu 134 224 -88 * 701 149 0 0 chr9 37712914 37713021 -104558423 - AluJb SINE Alu -201 111 5 2038 150 0 0 chr9 37713311 37713605 -104557839 + AluSx SINE Alu 1 294 -18 532 260 40 6 chr9 37713650 37713827 -104557617 + L1MEd LINE L1 19 201 -5918 389 238 143 0 chr9 37713937 37714065 -104557379 + MIR SINE MIR 47 189 -62 231 232 85 12 chr9 37714073 37714155 -104557289 - MIR SINE MIR 0 262 175 1713 197 0 51 chr9 37714157 37714532 -104556912 + MLT1A2 LTR MaLR 6 361 -13 1034 256 152 75 chr9 37714562 37715166 -104556278 + L1MEd LINE L1 238 933 -5186 1970 157 3 0 chr9 37715166 37715460 -104555984 + AluSx SINE Alu 1 295 -17 1034 256 152 75 chr9 37715460 37715737 -104555707 + L1MEd LINE L1 933 1187 -4932 513 224 35 0 chr9 37715906 37716022 -104555422 + L2 LINE L2 3193 3312 -1 1837 157 20 3 chr9 37716152 37716445 -104554999 + AluJb SINE Alu 9 306 -6 650 270 46 77 chr9 37716884 37717273 -104554171 + L1M4 LINE L1 3613 3989 -2157 1462 218 38 48 chr9 37717285 37717657 -104553787 + L1MDa LINE L1 45 412 -6128 798 129 197 10 chr9 37717687 37717880 -104553564 + L1MDa LINE L1 2393 2621 -3919 * 1201 199 86 27 chr9 37717871 37718172 -104553272 + L1MD2 LINE L1 5825 6143 -216 394 192 58 33 chr9 37718180 37718300 -104553144 + L1MD2 LINE L1 6210 6332 -27 414 236 0 115 chr9 37718605 37718702 -104552742 + L1M4 LINE L1 4012 4084 -2062 2525 52 13 3 chr9 37718702 37719008 -104552436 - AluY SINE Alu -1 310 2 414 236 0 115 chr9 37719008 37719075 -104552369 + L1M4 LINE L1 4084 4157 -1989 1574 172 90 0 chr9 37719082 37719350 -104552094 + AluJb SINE Alu 1 292 -20 24 32 0 0 chr9 37719619 37719650 -104551794 + AT_rich Low_complexity Low_complexity 1 31 0 922 262 145 0 chr9 37719767 37720015 -104551429 - AluJb SINE Alu -16 286 3 2474 90 3 0 chr9 37720057 37720369 -104551075 - AluSp SINE Alu 0 313 1 1276 129 0 0 chr9 37720785 37720956 -104550488 + AluJb SINE Alu 131 301 -11 329 246 49 0 chr9 37721247 37721369 -104550075 - L1M4 LINE L1 -1088 5058 4931 5336 103 57 5 chr9 37721471 37722325 -104549119 - L1MA3 LINE L1 0 6305 5407 10178 146 10 15 chr9 37722428 37724685 -104546759 - HERVH LTR ERV1 -4207 3506 830 1156 202 24 29 chr9 37724753 37725178 -104546266 - HERVH LTR ERV1 -7254 459 1 2137 99 42 6 chr9 37725178 37725554 -104545890 - LTR7 LTR ERV1 0 450 1 2812 91 53 90 chr9 37725554 37725629 -104545815 - MER4-int LTR ERV1 -4292 2306 2230 4904 128 28 4 chr9 37725629 37726390 -104545054 + MER4E LTR ERV1 1 779 0 2812 91 53 90 chr9 37726390 37726592 -104544852 - MER4-int LTR ERV1 -4368 2230 2022 2139 128 7 0 chr9 37726592 37726890 -104544554 - AluSq SINE Alu -13 300 1 2812 91 53 90 chr9 37726890 37727191 -104544253 - MER4-int LTR ERV1 -4576 2022 1748 5380 119 81 37 chr9 37727195 37727794 -104543650 - MER4-int LTR ERV1 -5599 1159 507 1663 201 7 3 chr9 37727794 37728082 -104543362 - AluSx SINE Alu -23 289 1 5380 119 81 37 chr9 37728082 37728371 -104543073 - MER4-int LTR ERV1 -6251 507 232 1191 108 12 0 chr9 37728371 37728537 -104542907 - AluSg/x SINE Alu -15 295 128 535 127 0 0 chr9 37728537 37728616 -104542828 - AluJ/FLAM SINE Alu -232 80 2 298 70 0 23 chr9 37728616 37728659 -104542785 - MER4-int LTR ERV1 -6515 243 202 219 69 0 0 chr9 37728661 37728690 -104542754 + (A)n Simple_repeat Simple_repeat 1 29 0 1240 227 44 61 chr9 37728697 37728942 -104542502 - MER4-int LTR ERV1 -4129 2202 1963 2317 87 0 13 chr9 37728942 37729242 -104542202 - AluSg SINE Alu -14 296 1 1240 227 44 61 chr9 37729242 37729357 -104542087 - MER4-int LTR ERV1 -4368 1963 1848 2380 72 3 16 chr9 37729360 37729667 -104541777 - AluSg SINE Alu -7 303 1 306 177 0 62 chr9 37729726 37729822 -104541622 - MER4-int LTR ERV1 -5758 840 751 2729 115 76 29 chr9 37729859 37730150 -104541294 - MER4-int LTR ERV1 -6009 589 313 333 0 0 0 chr9 37730150 37730187 -104541257 + (TAA)n Simple_repeat Simple_repeat 2 38 0 2729 115 76 29 chr9 37730187 37730390 -104541054 - MER4-int LTR ERV1 -6285 313 1 323 330 0 0 chr9 37730390 37730478 -104540966 - L2 LINE L2 -2 3311 3224 180 0 0 0 chr9 37731815 37731835 -104539609 + (TTTTTA)n Simple_repeat Simple_repeat 3 22 0 2181 140 0 0 chr9 37732951 37733259 -104538185 - AluSx SINE Alu -3 309 2 730 262 118 54 chr9 37733876 37734265 -104537179 + L3 LINE CR1 1004 1417 -160 2452 65 13 10 chr9 37734354 37734660 -104536784 - AluSg SINE Alu -3 307 1 2177 93 3 0 chr9 37738164 37738464 -104532980 - AluSx SINE Alu -11 301 1 1809 141 6 33 chr9 37738805 37738986 -104532458 - L1MC3 LINE L1 -17 7768 7599 2221 83 7 3 chr9 37738986 37739286 -104532158 - AluSp SINE Alu -12 301 1 1809 141 6 33 chr9 37739286 37739437 -104532007 - L1MC3 LINE L1 -186 7599 7445 2323 75 0 0 chr9 37739437 37739731 -104531713 - AluY SINE Alu -16 295 2 553 281 0 0 chr9 37739816 37739930 -104531514 + Charlie8 DNA MER1_type 163 276 -2141 897 183 0 18 chr9 37739954 37740123 -104531321 + FRAM SINE Alu 2 167 -9 1702 166 7 7 chr9 37740451 37740747 -104530697 - AluJb SINE Alu -16 296 1 1650 130 0 4 chr9 37740852 37741099 -104530345 - AluSq SINE Alu -67 246 1 908 106 15 0 chr9 37741320 37741452 -104529992 - AluJo SINE Alu -178 134 1 21 36 0 0 chr9 37741579 37741607 -104529837 + AT_rich Low_complexity Low_complexity 1 28 0 189 107 0 0 chr9 37741680 37741708 -104529736 + (T)n Simple_repeat Simple_repeat 1 28 0 470 111 0 0 chr9 37741709 37741772 -104529672 - MLT1A2 LTR MaLR -46 328 266 1970 105 41 7 chr9 37743237 37743532 -104527912 - AluSg SINE Alu -3 307 3 1983 92 0 41 chr9 37743576 37743897 -104527547 - AluSg SINE Alu 0 309 1 271 231 0 0 chr9 37743898 37743950 -104527494 + HERVH LTR ERV1 3503 3554 -4159 1223 252 0 0 chr9 37744015 37744293 -104527151 + HERVH LTR ERV1 4416 4693 -3020 * 4082 111 3 2 chr9 37744287 37744890 -104526554 + HERVH LTR ERV1 5400 6003 -1710 24 91 0 0 chr9 37745023 37745089 -104526355 + GC_rich Low_complexity Low_complexity 1 66 0 2197 78 0 14 chr9 37746780 37747111 -104524333 + AluSg SINE Alu 3 329 0 475 213 160 69 chr9 37747136 37747324 -104524120 + L2 LINE L2 3104 3308 -5 363 298 111 18 chr9 37747334 37747505 -104523939 + MIR3 SINE MIR 13 199 -9 2177 93 3 0 chr9 37750559 37750859 -104520585 - AluSx SINE Alu -11 301 1 1820 138 6 33 chr9 37751201 37751382 -104520062 - L1MC3 LINE L1 -17 7768 7599 2221 83 7 3 chr9 37751382 37751682 -104519762 - AluSp SINE Alu -12 301 1 1820 138 6 33 chr9 37751682 37751833 -104519611 - L1MC3 LINE L1 -186 7599 7445 1990 125 0 3 chr9 37751833 37752128 -104519316 - AluSc SINE Alu -15 294 1 2243 72 3 31 chr9 37752129 37752449 -104518995 - AluSp SINE Alu 0 313 3 1335 181 10 61 chr9 37752454 37752632 -104518812 - AluJo SINE Alu -17 295 138 1976 122 3 31 chr9 37752632 37752953 -104518491 - AluSx SINE Alu 0 312 1 1335 181 10 61 chr9 37752953 37753084 -104518360 - AluJo SINE Alu -174 138 2 1986 147 0 0 chr9 37753237 37753543 -104517901 + AluSx SINE Alu 1 306 -6 2096 97 0 31 chr9 37753750 37754070 -104517374 + AluSq SINE Alu 1 310 -3 525 196 9 27 chr9 37754079 37754191 -104517253 - L1ME LINE L1 -502 5668 5559 1234 188 116 72 chr9 37754194 37754625 -104516819 + LTR7 LTR ERV1 1 450 0 1575 199 3 6 chr9 37754870 37755181 -104516263 - AluJo SINE Alu -2 310 1 196 137 39 0 chr9 37755368 37755419 -104516025 + (TA)n Simple_repeat Simple_repeat 2 54 0 1907 140 0 7 chr9 37755441 37755733 -104515711 - AluSx SINE Alu -22 290 1 2237 102 0 0 chr9 37755747 37756050 -104515394 - AluSg SINE Alu -7 303 1 5118 97 15 0 chr9 37756089 37756770 -104514674 - LTR8 LTR ERV1 0 691 1 1035 170 11 6 chr9 37756900 37757082 -104514362 + AluJo SINE Alu 2 184 -128 2159 56 42 14 chr9 37757378 37757664 -104513780 - AluY SINE Alu -15 296 3 617 173 0 0 chr9 37757673 37757777 -104513667 + Cheshire DNA MER1_type 795 898 -1522 1505 138 59 62 chr9 37757872 37758073 -104513371 - AluJb SINE Alu -6 306 105 2098 129 0 0 chr9 37758073 37758375 -104513069 + AluSx SINE Alu 1 302 -10 1505 138 59 62 chr9 37758375 37758478 -104512966 - AluJb SINE Alu -207 105 3 1515 184 33 21 chr9 37758892 37758923 -104512521 + Cheshire DNA MER1_type 896 925 -1495 2067 97 0 14 chr9 37758923 37759211 -104512233 + AluSx SINE Alu 20 303 -9 1515 184 33 21 chr9 37759211 37759516 -104511928 + Cheshire DNA MER1_type 925 1236 -1184 623 124 21 10 chr9 37759519 37759616 -104511828 + MER4A LTR ERV1 1 98 -566 1598 171 6 35 chr9 37759616 37759972 -104511472 + MER4A LTR ERV1 261 664 0 671 188 88 50 chr9 37759974 37760443 -104511001 + MER4A-int LTR ERV1 1 624 -5974 279 0 0 0 chr9 37760444 37760475 -104510969 + (TG)n Simple_repeat Simple_repeat 2 32 0 414 304 20 69 chr9 37760539 37760743 -104510701 + MER4A-int LTR ERV1 383 576 -6182 311 187 0 44 chr9 37760865 37760956 -104510488 + MER4A-int LTR ERV1 751 837 -5761 228 174 0 65 chr9 37760979 37761025 -104510419 + LTR49 LTR ERV1 271 313 -282 15185 130 85 90 chr9 37761045 37761375 -104510069 + MER4A-int LTR ERV1 499 829 -5769 2235 92 0 13 chr9 37761375 37761689 -104509755 - AluSg SINE Alu 0 310 1 15185 130 85 90 chr9 37761689 37762270 -104509174 + MER4A-int LTR ERV1 829 1411 -5187 2245 89 3 0 chr9 37762270 37762573 -104508871 + AluSp SINE Alu 1 304 -9 15185 130 85 90 chr9 37762573 37763198 -104508246 + MER4A-int LTR ERV1 1411 2038 -4560 2139 92 3 3 chr9 37763198 37763490 -104507954 + AluSq SINE Alu 1 292 -21 15185 130 85 90 chr9 37763490 37764529 -104506915 + MER4A-int LTR ERV1 2038 3081 -3517 2707 7 0 0 chr9 37764529 37764829 -104506615 - AluY SINE Alu -11 300 1 15185 130 85 90 chr9 37764829 37765870 -104505574 + MER4A-int LTR ERV1 3081 4126 -2472 2158 85 7 7 chr9 37765870 37766165 -104505279 + AluY SINE Alu 1 295 -16 15185 130 85 90 chr9 37766165 37767196 -104504248 + MER4A-int LTR ERV1 4126 6598 0 542 134 31 21 chr9 37767197 37767294 -104504150 + MER4A LTR ERV1 1 98 -566 1474 151 3 26 chr9 37767294 37767585 -104503859 + MER4A LTR ERV1 261 603 -61 300 71 0 0 chr9 37767580 37767622 -104503822 - MER58 DNA MER1_type -80 2340 2299 * 1633 143 61 14 chr9 37767696 37767976 -104503468 + AluSx SINE Alu 1 293 -19 355 302 128 27 chr9 37767976 37768234 -104503210 - L2 LINE L2 -112 3201 2918 1994 106 0 0 chr9 37768235 37768509 -104502935 + AluSg SINE Alu 1 274 -36 1176 181 0 68 chr9 37768774 37769039 -104502405 - AluJo SINE Alu -45 267 21 569 119 12 0 chr9 37769041 37769125 -104502319 + MER67A LTR ERV1 100 184 -359 383 114 0 100 chr9 37769117 37769187 -104502257 + AluJo/FLAM SINE Alu 64 118 -184 * 1475 143 0 17 chr9 37769190 37769427 -104502017 + AluSx SINE Alu 1 233 -79 345 87 0 0 chr9 37769427 37769473 -104501971 - MER41A-int LTR ERV1 -4268 1995 1950 310 176 118 47 chr9 37769476 37769561 -104501883 - MER41A-int LTR ERV1 -4211 1735 1645 254 263 0 18 chr9 37769563 37769620 -104501824 - tRNA-Glu-GAG tRNA tRNA -13 62 7 3459 140 68 40 chr9 37769627 37770056 -104501388 - MER41A-int LTR ERV1 -4367 1579 1125 1991 128 0 3 chr9 37770056 37770354 -104501090 - AluSg SINE Alu -9 301 5 3459 140 68 40 chr9 37770354 37770552 -104500892 - MER41A-int LTR ERV1 -4821 1125 934 2961 134 95 8 chr9 37770552 37771309 -104500135 - MER41A-int LTR ERV1 -5498 448 2 1078 80 0 49 chr9 37771395 37771557 -104499887 - MER41A LTR ERV1 0 554 401 839 130 8 0 chr9 37771558 37771689 -104499755 - AluJb SINE Alu -12 300 169 7353 130 65 22 chr9 37771692 37771786 -104499658 + MER52C LTR ERV1 1 89 -1189 2289 91 0 0 chr9 37771786 37772095 -104499349 - AluY SINE Alu -2 309 1 7353 130 65 22 chr9 37772095 37773223 -104498221 + MER52C LTR ERV1 89 1276 -2 3351 118 92 4 chr9 37773225 37773749 -104497695 + MER52C-int LTR ERV1 2 571 -6520 6562 166 37 15 chr9 37773888 37775228 -104496216 + MER52C-int LTR ERV1 1761 3204 -3887 4064 161 22 18 chr9 37775247 37775930 -104495514 + MER52C-int LTR ERV1 807 1492 -5599 2191 164 42 79 chr9 37775941 37776626 -104494818 + MER52C-int LTR ERV1 991 1700 -3886 2184 81 0 3 chr9 37776626 37776937 -104494507 + AluY SINE Alu 1 310 0 2191 164 42 79 chr9 37776937 37777058 -104494386 + MER52C-int LTR ERV1 1700 1824 -3762 2311 78 0 7 chr9 37777058 37777365 -104494079 + AluSc SINE Alu 5 309 0 2191 164 42 79 chr9 37777365 37777383 -104494061 + MER52C-int LTR ERV1 1824 1841 -3745 2063 140 0 3 chr9 37777383 37777691 -104493753 + AluSx SINE Alu 1 307 -5 2191 164 42 79 chr9 37777691 37777750 -104493694 + MER52C-int LTR ERV1 1841 1938 -3648 * 3754 133 105 29 chr9 37777742 37778444 -104493000 + MER52C-int LTR ERV1 592 1347 -6469 325 100 17 17 chr9 37778430 37778490 -104492954 + MER52C-int LTR ERV1 1051 1110 -7010 * 447 220 37 0 chr9 37778489 37778634 -104492810 + MER52C-int LTR ERV1 1879 2000 -3217 1712 176 31 6 chr9 37779039 37779371 -104492073 + MER52C-int LTR ERV1 3269 3591 -3405 198 0 0 0 chr9 37779371 37779393 -104492051 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1712 176 31 6 chr9 37779393 37779429 -104492015 + MER52C-int LTR ERV1 3591 4954 -2042 29 0 0 0 chr9 37779444 37779473 -104491971 + AT_rich Low_complexity Low_complexity 1 29 0 628 201 50 60 chr9 37779474 37779673 -104491771 + L1MA2 LINE L1 6102 6298 -6 24 67 0 0 chr9 37779996 37780041 -104491403 + AT_rich Low_complexity Low_complexity 1 45 0 1996 135 0 0 chr9 37780283 37780580 -104490864 + AluSx SINE Alu 1 297 -15 2140 107 3 0 chr9 37783316 37783614 -104487830 + AluSc SINE Alu 1 299 -10 1981 168 143 32 chr9 37783614 37784415 -104487029 + MER52C-int LTR ERV1 2270 4690 -1256 378 58 39 0 chr9 37784419 37784471 -104486973 + MER52C-int LTR ERV1 5976 6029 -1176 * 1297 128 20 0 chr9 37784468 37784663 -104486781 + MER52C-int LTR ERV1 6892 7090 -1 1165 121 12 0 chr9 37784664 37784837 -104486607 + MER52C LTR ERV1 1 175 -1103 1505 164 0 0 chr9 37784848 37785086 -104486358 - AluSq SINE Alu -75 238 1 883 73 16 0 chr9 37785086 37785210 -104486234 - MER4-int LTR ERV1 -4171 2427 2302 1979 119 38 13 chr9 37785210 37785584 -104485860 - LTR7 LTR ERV1 0 450 1 3411 127 11 26 chr9 37785585 37786150 -104485294 - HERVH LTR ERV1 -1 7712 7157 18598 45 1 2 chr9 37786268 37790366 -104481078 - L1PA5 LINE L1 -141 6013 1922 943 175 57 9 chr9 37790466 37790694 -104480750 + L1 LINE L1 1782 2020 -5189 1877 143 21 0 chr9 37790701 37790981 -104480463 + AluSx SINE Alu 1 286 -26 2305 163 5 16 chr9 37791014 37791451 -104479993 - L1 LINE L1 -2051 5157 4726 470 115 39 13 chr9 37791454 37791532 -104479912 + L1 LINE L1 5143 5222 -1986 266 303 0 0 chr9 37791532 37791598 -104479846 - MER61B LTR ERV1 -184 241 176 6143 142 53 6 chr9 37791598 37793583 -104477861 + L1MA4A LINE L1 4227 6296 -7 383 197 30 61 chr9 37793588 37793720 -104477724 + LTR48 LTR ERV1 586 713 -74 3065 190 25 92 chr9 37793721 37794780 -104476664 + L1M4 LINE L1 4373 5360 -786 1508 184 0 4 chr9 37794786 37795042 -104476402 + AluJb SINE Alu 1 255 -57 9365 145 11 15 chr9 37845093 37847350 -104424094 - HERVH LTR ERV1 -4207 3506 830 1046 202 24 29 chr9 37847418 37847843 -104423601 - HERVH LTR ERV1 -7254 459 1 1982 99 42 6 chr9 37847843 37848219 -104423225 - LTR7 LTR ERV1 0 450 1 2571 88 53 92 chr9 37848219 37848294 -104423150 - HERVH LTR ERV1 -4292 2306 2230 4796 128 28 4 chr9 37848294 37849055 -104422389 + MER4E LTR ERV1 1 779 0 2571 88 53 92 chr9 37849055 37849257 -104422187 - HERVH LTR ERV1 -4368 2230 2022 2135 128 7 0 chr9 37849257 37849555 -104421889 - AluSq SINE Alu -13 300 1 2571 88 53 92 chr9 37849555 37849841 -104421603 - HERVH LTR ERV1 -4576 2022 1764 4958 119 81 37 chr9 37849860 37850459 -104420985 - HERVH LTR ERV1 -5599 1159 507 1680 201 7 3 chr9 37850459 37850747 -104420697 - AluSx SINE Alu -23 289 1 4958 119 81 37 chr9 37850747 37851036 -104420408 - HERVH LTR ERV1 -6251 507 232 1181 108 12 0 chr9 37851036 37851202 -104420242 - AluSg/x SINE Alu -15 297 130 534 125 0 0 chr9 37851202 37851282 -104420162 - AluJ/FLAM SINE Alu -232 80 1 264 71 0 24 chr9 37851282 37851324 -104420120 - HERVH LTR ERV1 -6516 242 202 219 69 0 0 chr9 37851326 37851355 -104420089 + (A)n Simple_repeat Simple_repeat 1 29 0 1115 230 43 23 chr9 37851423 37851607 -104419837 - HERVH LTR ERV1 -4178 2153 1959 2284 87 0 13 chr9 37851607 37851907 -104419537 - AluSg SINE Alu -14 296 1 1115 230 43 23 chr9 37851907 37852022 -104419422 - HERVH LTR ERV1 -4372 1959 1848 2348 72 3 16 chr9 37852025 37852332 -104419112 - AluSg SINE Alu -7 303 1 268 198 0 62 chr9 37852392 37852488 -104418956 - HERVH LTR ERV1 -5758 840 751 2509 107 66 9 chr9 37852525 37852816 -104418628 - HERVH LTR ERV1 -6009 589 316 333 0 0 0 chr9 37852816 37852853 -104418591 + (TAA)n Simple_repeat Simple_repeat 2 38 0 2509 107 66 9 chr9 37852853 37853056 -104418388 - HERVH LTR ERV1 -6282 316 1 354 330 0 0 chr9 37853056 37853144 -104418300 - L2 LINE L2 -2 3270 3183 180 0 0 0 chr9 37854481 37854501 -104416943 + (TTTTTA)n Simple_repeat Simple_repeat 3 22 0 2190 140 0 0 chr9 37855617 37855925 -104415519 - AluSx SINE Alu -3 309 2 240 250 0 0 chr9 37857316 37857364 -104414080 + MIR SINE MIR 93 140 -68 1933 178 0 3 chr9 37857582 37857886 -104413558 - AluJo SINE Alu -9 303 1 450 318 143 15 chr9 37858068 37858411 -104413033 - L2 LINE L2 -958 2356 1970 1803 169 13 26 chr9 37859516 37859824 -104411620 - AluJb SINE Alu -8 304 1 1843 131 62 0 chr9 37860862 37861137 -104410307 - AluSx SINE Alu -20 292 1 1193 152 52 45 chr9 37861405 37861674 -104409770 - L1MA10 LINE L1 -19 6315 6045 23 33 0 0 chr9 37863236 37863266 -104408178 + AT_rich Low_complexity Low_complexity 1 30 0 21 57 0 0 chr9 37863598 37863633 -104407811 + AT_rich Low_complexity Low_complexity 1 35 0 553 267 76 28 chr9 37863881 37863952 -104407492 - L1MC4a LINE L1 -338 5783 5717 2082 139 10 7 chr9 37863952 37864262 -104407182 - AluSx SINE Alu -1 311 1 553 267 76 28 chr9 37864262 37864537 -104406907 - L1MC4a LINE L1 -404 5717 5497 226 229 0 59 chr9 37864564 37864591 -104406853 + T-rich Low_complexity Low_complexity 4 31 -83 6712 115 27 17 chr9 37864591 37865651 -104405793 - MER11C LTR ERVK 0 1071 1 226 229 0 59 chr9 37865651 37865741 -104405703 + T-rich Low_complexity Low_complexity 31 114 0 764 176 0 0 chr9 37865926 37866068 -104405376 - L1M4b LINE L1 -6631 228 87 2240 110 0 10 chr9 37866178 37866477 -104404967 + AluSg SINE Alu 1 296 -14 536 221 33 61 chr9 37866479 37866660 -104404784 - MIR SINE MIR 0 262 87 287 241 58 0 chr9 37866698 37866785 -104404659 - L1ME LINE L1 -342 5779 5688 351 0 0 0 chr9 37866962 37867001 -104404443 + (CA)n Simple_repeat Simple_repeat 1 39 0 286 211 37 46 chr9 37867007 37867116 -104404328 - L1MC4a LINE L1 -1874 5934 5827 268 140 0 0 chr9 37867156 37867206 -104404238 - L1MC4a LINE L1 -1984 5824 5775 3285 142 19 2 chr9 37867855 37868427 -104403017 - L1MB2 LINE L1 -2 6169 5588 459 323 28 23 chr9 37868520 37868707 -104402737 + MIR SINE MIR 3 188 -64 336 336 163 27 chr9 37869508 37869949 -104401495 - L2 LINE L2 -978 2336 1836 1309 201 101 90 chr9 37869955 37870412 -104401032 - MLT1C LTR MaLR 0 467 6 2181 31 0 4 chr9 37870922 37871183 -104400261 - L1PA5 LINE L1 -3 6151 5892 28803 42 1 1 chr9 37871283 37875327 -104396117 - L1PA5 LINE L1 -476 5678 1633 432 162 34 77 chr9 37875397 37875514 -104395930 - L1MB8 LINE L1 -1 6177 6066 3288 167 48 31 chr9 37875607 37876343 -104395101 - L1MB8 LINE L1 -1 6177 5430 2300 63 0 3 chr9 37876412 37876697 -104394747 - AluY SINE Alu -7 304 21 1961 136 3 3 chr9 37876801 37877095 -104394349 + AluSx SINE Alu 1 294 -18 480 259 59 16 chr9 37877096 37877351 -104394093 - L1MC5 LINE L1 -196 7765 7500 880 143 8 0 chr9 37877354 37877487 -104393957 - AluJb SINE Alu -178 134 1 459 251 78 94 chr9 37877526 37877819 -104393625 - L1MC5 LINE L1 -516 7445 7149 1538 148 109 7 chr9 37877819 37878102 -104393342 - AluSx SINE Alu 0 312 1 459 251 78 94 chr9 37878102 37878170 -104393274 - L1MC5 LINE L1 -812 7149 7081 2306 56 0 0 chr9 37878170 37878440 -104393004 + AluY SINE Alu 27 296 -15 459 251 78 94 chr9 37878440 37878579 -104392865 - L1MC5 LINE L1 -880 7081 6952 1267 197 0 0 chr9 37878645 37878853 -104392591 - AluJo SINE Alu -20 292 85 236 279 0 0 chr9 37878860 37878928 -104392516 - L1MC4a LINE L1 -891 6917 6850 311 313 9 26 chr9 37878936 37879051 -104392393 - L1MC4 LINE L1 0 8042 7930 488 287 144 15 chr9 37879183 37879517 -104391927 - L1ME LINE L1 -382 5788 5412 422 209 139 47 chr9 37879533 37879705 -104391739 - L2 LINE L2 0 3313 3126 1847 165 58 9 chr9 37879713 37880059 -104391385 - MLT1A1 LTR MaLR -2 363 1 562 55 102 0 chr9 37880361 37880599 -104390845 + (TA)n Simple_repeat Simple_repeat 1 262 0 486 198 66 25 chr9 37880599 37880720 -104390724 - FLAM_C SINE Alu -7 126 1 1204 133 29 151 chr9 37880734 37880852 -104390592 - L1MC3 LINE L1 0 7785 7654 3019 157 36 79 chr9 37880852 37881572 -104389872 - LTR8 LTR ERV1 0 691 3 1204 133 29 151 chr9 37881572 37881836 -104389608 - L1MC3 LINE L1 -131 7654 7450 787 268 74 9 chr9 37881850 37882175 -104389269 - L1ME LINE L1 -2005 4141 3796 217 284 0 37 chr9 37882182 37882263 -104389181 + (CATATA)n Simple_repeat Simple_repeat 5 82 0 279 257 4 26 chr9 37882263 37882379 -104389065 - L1ME LINE L1 -2369 3777 3659 904 81 0 0 chr9 37882672 37882783 -104388661 + AluSx SINE Alu 1 111 -201 446 194 16 0 chr9 37882790 37882914 -104388530 + (TA)n Simple_repeat Simple_repeat 1 126 0 1322 125 0 0 chr9 37882914 37883106 -104388338 + AluSx SINE Alu 121 312 0 524 277 141 0 chr9 37883343 37883527 -104387917 + L2 LINE L2 2591 2800 -514 366 247 0 0 chr9 37883530 37883603 -104387841 + L2 LINE L2 3241 3313 0 201 322 0 58 chr9 37883624 37883711 -104387733 - MIR SINE MIR -95 113 32 242 378 98 47 chr9 37884799 37885095 -104386349 + L2 LINE L2 2960 3270 -2 189 0 0 0 chr9 37885262 37885283 -104386161 + (TG)n Simple_repeat Simple_repeat 2 22 0 1550 167 0 30 chr9 37885444 37885735 -104385709 + AluJo SINE Alu 29 311 0 703 287 27 31 chr9 37885736 37885997 -104385447 - MIR SINE MIR -1 261 2 513 187 56 173 chr9 37886567 37886976 -104384468 - L1MC4 LINE L1 0 8042 7697 4276 96 14 8 chr9 37886976 37887611 -104383833 - L1MA3 LINE L1 0 6305 5667 513 187 56 173 chr9 37887611 37887687 -104383757 - L1MC4 LINE L1 -345 7697 7614 401 131 37 37 chr9 37887687 37887794 -104383650 + CT-rich Low_complexity Low_complexity 5 111 0 2023 157 3 6 chr9 37887802 37888114 -104383330 - AluSx SINE Alu -1 311 1 21 0 0 0 chr9 37888122 37888143 -104383301 + AT_rich Low_complexity Low_complexity 1 21 0 1917 154 0 7 chr9 37888145 37888437 -104383007 + AluJb SINE Alu 1 290 -22 1739 161 13 7 chr9 37888609 37888907 -104382537 - AluSx SINE Alu -12 300 1 348 253 0 0 chr9 37888908 37888983 -104382461 - L1ME LINE L1 -613 5553 5479 213 213 0 0 chr9 37888985 37889032 -104382412 + CT-rich Low_complexity Low_complexity 2 48 0 450 223 33 33 chr9 37889145 37889266 -104382178 - L2 LINE L2 0 3313 3193 * 886 306 78 45 chr9 37889258 37889810 -104381634 + L2 LINE L2 2218 2787 -527 603 299 113 14 chr9 37890948 37891169 -104380275 - MIR SINE MIR 0 262 20 2180 116 3 0 chr9 37891169 37891463 -104379981 + AluSx SINE Alu 1 295 -17 4244 149 30 26 chr9 37893370 37894359 -104377085 - HUERS-P3 LTR ERV1 -6530 888 17 3315 126 69 22 chr9 37894381 37894960 -104376484 - LTR9 LTR ERV1 -6 606 1 1311 87 78 5 chr9 37894968 37895174 -104376270 + MER4D LTR ERV1 652 872 0 186 189 0 0 chr9 37895577 37895614 -104375830 + (CATATA)n Simple_repeat Simple_repeat 2 38 0 1830 186 0 0 chr9 37896376 37896682 -104374762 - AluJo SINE Alu -6 306 1 2070 148 0 0 chr9 37896816 37897119 -104374325 - AluSx SINE Alu -9 303 1 2030 135 130 18 chr9 37897186 37897571 -104373873 + MSTA LTR MaLR 1 428 0 2151 155 58 22 chr9 37897732 37898145 -104373299 + MSTA LTR MaLR 1 428 0 1867 142 3 0 chr9 37898145 37898468 -104372976 + MSTA-int LTR MaLR 1 324 -1327 28025 44 7 6 chr9 37898472 37902405 -104369039 - L1PA5 LINE L1 0 6154 2214 2479 70 0 0 chr9 37902405 37902703 -104368741 - AluY SINE Alu -13 298 1 28025 44 7 6 chr9 37902703 37903220 -104368224 - L1PA5 LINE L1 -3940 2214 1699 7086 168 27 8 chr9 37903222 37904535 -104366909 + MSTA-int LTR MaLR 315 1651 0 2245 136 97 0 chr9 37904535 37904925 -104366519 + MSTA LTR MaLR 1 428 0 2466 172 8 30 chr9 37904969 37905493 -104365951 - L1MB7 LINE L1 -1 6183 5672 1707 153 6 53 chr9 37905513 37905834 -104365610 + AluJb SINE Alu 1 306 -6 2987 171 117 60 chr9 37905834 37906210 -104365234 - L1MB5 LINE L1 -9 6165 5812 2330 96 0 0 chr9 37906210 37906502 -104364942 + AluSc SINE Alu 6 297 -12 2987 171 117 60 chr9 37906502 37906869 -104364575 - L1MB5 LINE L1 -362 5812 5467 1467 161 0 117 chr9 37906869 37907090 -104364354 - AluJo SINE Alu 0 302 133 324 0 0 0 chr9 37907090 37907126 -104364318 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 1467 161 0 117 chr9 37907126 37907246 -104364198 - AluJo SINE Alu -169 133 1 2987 171 117 60 chr9 37907246 37907618 -104363826 - L1MB5 LINE L1 -707 5467 4964 2720 89 38 33 chr9 37908022 37908448 -104362996 - MSTA LTR MaLR 0 428 1 2013 136 4 0 chr9 37908667 37908975 -104362469 - AluSx SINE Alu 0 309 1 2021 139 3 7 chr9 37909002 37909290 -104362154 - AluSx SINE Alu -25 287 1 785 175 0 0 chr9 37909572 37909698 -104361746 + AluJ SINE Alu 2 127 -175 891 228 0 0 chr9 37909861 37910054 -104361390 - MER3 DNA MER1_type -5 204 12 2280 105 0 0 chr9 37910143 37910437 -104361007 - AluSx SINE Alu -18 294 1 652 177 15 23 chr9 37910516 37910646 -104360798 - FLAM_A SINE Alu -3 130 2 675 298 107 9 chr9 37911013 37911339 -104360105 - L1MC4a LINE L1 -1941 5867 5510 538 165 0 0 chr9 37911425 37911516 -104359928 + AluJ SINE Alu 134 224 -88 * 699 149 0 0 chr9 37911507 37911614 -104359830 - AluJb SINE Alu -201 111 5 2030 150 0 0 chr9 37911904 37912198 -104359246 + AluSx SINE Alu 1 294 -18 474 260 40 6 chr9 37912243 37912420 -104359024 + L1MEd LINE L1 19 201 -5918 416 238 143 0 chr9 37912530 37912658 -104358786 + MIR SINE MIR 47 189 -62 260 219 61 24 chr9 37912666 37912748 -104358696 - MIR SINE MIR -3 259 175 1554 197 0 51 chr9 37912750 37913125 -104358319 + MLT1A2 LTR MaLR 6 361 -13 759 256 154 76 chr9 37913155 37913758 -104357686 + L1MEd LINE L1 238 933 -5186 1981 157 3 0 chr9 37913758 37914052 -104357392 + AluSx SINE Alu 1 295 -17 759 256 154 76 chr9 37914052 37914329 -104357115 + L1MEd LINE L1 933 1187 -4932 562 224 35 0 chr9 37914498 37914614 -104356830 + L2 LINE L2 3193 3312 -1 1843 157 20 3 chr9 37914744 37915037 -104356407 + AluJb SINE Alu 9 306 -6 545 270 46 77 chr9 37915476 37915865 -104355579 + L1M4 LINE L1 3613 3989 -2157 1320 218 38 48 chr9 37915877 37916249 -104355195 + L1MDa LINE L1 45 412 -6128 750 128 192 2 chr9 37916281 37916472 -104354972 + L1MDa LINE L1 2420 2621 -3919 1041 204 93 11 chr9 37916474 37916754 -104354690 + L1MD2 LINE L1 5831 6133 -226 1336 178 8 23 chr9 37916908 37917167 -104354277 - AluJb SINE Alu -57 255 1 2806 190 25 92 chr9 37917173 37918232 -104353212 - L1M4 LINE L1 -786 5360 4373 341 197 30 61 chr9 37918233 37918365 -104353079 - LTR48 LTR ERV1 -74 713 586 5817 143 53 6 chr9 37918370 37920355 -104351089 - L1MA4A LINE L1 -7 6296 4227 242 303 0 0 chr9 37920355 37920421 -104351023 + MER61B LTR ERV1 176 241 -184 443 136 4 1 chr9 37920421 37920499 -104350945 - L1 LINE L1 -1986 4160 4081 2179 163 5 16 chr9 37920502 37920939 -104350505 + L1 LINE L1 3664 4095 -2051 1901 156 20 0 chr9 37920950 37921252 -104350192 - AluSx SINE Alu -4 308 1 1799 254 114 2 chr9 37921259 37921845 -104349599 - L1M2b LINE L1 -5189 2020 1369 419 222 0 0 chr9 37921845 37921926 -104349518 - MER20 DNA MER1_type -48 171 91 669 168 35 28 chr9 37921926 37922069 -104349375 + MER5A DNA MER1_type 46 189 0 1637 187 42 55 chr9 37922111 37922151 -104349293 - MLT2A2 LTR ERVL 0 554 515 261 57 0 0 chr9 37922151 37922186 -104349258 + (TG)n Simple_repeat Simple_repeat 1 35 0 1637 187 42 55 chr9 37922186 37922699 -104348745 - MLT2A2 LTR ERVL -39 515 13 269 285 73 32 chr9 37922924 37923047 -104348397 + L3 LINE CR1 1346 1473 -104 1193 193 67 0 chr9 37923315 37923538 -104347906 + MER8 DNA MER2_type 1 238 -1 1309 191 76 39 chr9 37923599 37923955 -104347489 + MLT1A2 LTR MaLR 1 369 -5 2442 199 9 11 chr9 37923960 37924502 -104346942 + MLT1A2-int LTR MaLR 1 541 -830 278 244 33 11 chr9 37924555 37924645 -104346799 + MLT1A2-int LTR MaLR 676 767 -968 1896 183 25 8 chr9 37924707 37925105 -104346339 + MLT1A2-int LTR MaLR 1331 1735 0 1476 204 30 28 chr9 37925108 37925470 -104345974 + MLT1A2 LTR MaLR 4 366 -8 695 182 15 23 chr9 37925608 37925740 -104345704 + FLAM_C SINE Alu 1 131 -12 1716 129 82 18 chr9 37925775 37926054 -104345390 - AluSx SINE Alu -13 299 3 382 294 59 13 chr9 37926056 37926209 -104345235 + MIR3 SINE MIR 44 203 -5 882 115 0 23 chr9 37926371 37926501 -104344943 + FLAM_C SINE Alu 1 127 -6 266 54 0 0 chr9 37927403 37927440 -104344004 - L1PA7 LINE L1 -10 6144 6108 2112 104 0 0 chr9 37928290 37928560 -104342884 + AluY SINE Alu 1 270 -41 278 113 0 38 chr9 37928660 37928713 -104342731 - L1MC4 LINE L1 -517 7525 7475 739 247 34 11 chr9 37928717 37928980 -104342464 - L1MC4 LINE L1 -633 7409 7141 2593 232 23 60 chr9 37929042 37929815 -104341629 - MER21B LTR ERV1 -107 756 12 1482 226 31 19 chr9 37929845 37930269 -104341175 - L1MC4 LINE L1 -911 7131 6703 298 259 17 9 chr9 37930356 37930472 -104340972 + (TATATG)n Simple_repeat Simple_repeat 2 118 0 233 227 0 82 chr9 37930716 37930813 -104340631 - L1MC4a LINE L1 -172 7636 7548 * 458 187 22 82 chr9 37930799 37930887 -104340557 - L1M4 LINE L1 -1164 4982 4903 2387 93 0 3 chr9 37930887 37931187 -104340257 + AluSc SINE Alu 1 299 -10 458 187 22 82 chr9 37931187 37931232 -104340212 - L1M4 LINE L1 -1243 4903 4857 369 239 210 21 chr9 37931930 37932276 -104339168 + L1ME4a LINE L1 5613 6053 -68 2440 100 0 0 chr9 37932276 37932586 -104338858 - AluSx SINE Alu -2 310 1 369 239 210 21 chr9 37932586 37932658 -104338786 + L1ME4a LINE L1 6053 6110 -11 826 137 8 8 chr9 37934271 37934402 -104337042 - FLAM_C SINE Alu -2 131 1 197 319 1 62 chr9 37935210 37935292 -104336152 - MIR SINE MIR -133 75 5 2001 136 14 0 chr9 37935632 37935919 -104335525 - AluSq SINE Alu -22 291 1 2015 158 0 7 chr9 37936052 37936355 -104335089 + AluJb SINE Alu 1 301 -11 25 0 0 0 chr9 37936800 37936825 -104334619 + AT_rich Low_complexity Low_complexity 1 25 0 2839 154 28 9 chr9 37939061 37939601 -104331843 - L1MB5 LINE L1 0 6174 5625 638 239 45 57 chr9 37939601 37939848 -104331596 - L1MC4 LINE L1 -2054 5754 5511 2136 69 0 8 chr9 37941036 37941297 -104330147 + AluSc SINE Alu 39 297 -12 950 147 38 0 chr9 37941297 37941454 -104329990 + AluSg/x SINE Alu 132 294 -16 254 295 42 84 chr9 37941472 37941638 -104329806 - L2 LINE L2 -92 3180 3022 949 184 30 0 chr9 37941642 37941810 -104329634 - L1MC1 LINE L1 -185 6148 5976 307 342 83 50 chr9 37941810 37942107 -104329337 - L2 LINE L2 -250 3022 2712 296 216 98 46 chr9 37942231 37942384 -104329060 - L1ME3 LINE L1 -107 6055 5895 215 31 31 0 chr9 37942443 37942475 -104328969 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 2078 101 0 14 chr9 37942481 37942757 -104328687 - AluSx SINE Alu -37 275 4 548 221 4 111 chr9 37942760 37942995 -104328449 - L1MC5 LINE L1 -435 7526 7317 373 254 37 37 chr9 37943005 37943139 -104328305 - L1ME3 LINE L1 -319 5802 5669 296 323 30 0 chr9 37943358 37943457 -104327987 - L1ME3 LINE L1 -2166 5642 5541 651 258 159 30 chr9 37943559 37943892 -104327552 - L2 LINE L2 -5 3308 2933 493 228 48 54 chr9 37943893 37944003 -104327441 + L1ME3A LINE L1 5995 6105 -65 2188 116 0 19 chr9 37944003 37944313 -104327131 + AluSx SINE Alu 1 304 -8 493 228 48 54 chr9 37944313 37944369 -104327075 + L1ME3A LINE L1 6105 6160 -10 430 332 31 0 chr9 37944387 37944643 -104326801 - L1ME3 LINE L1 -2199 3947 3684 21 0 0 0 chr9 37945742 37945763 -104325681 + AT_rich Low_complexity Low_complexity 1 21 0 2142 142 3 0 chr9 37946180 37946483 -104324961 + AluSx SINE Alu 1 304 -8 25 51 0 0 chr9 37946866 37946905 -104324539 + AT_rich Low_complexity Low_complexity 1 39 0 1577 160 28 28 chr9 37947388 37947670 -104323774 + AluJo SINE Alu 7 288 -24 2322 112 0 0 chr9 37947685 37947988 -104323456 + AluSx SINE Alu 1 303 -9 1684 159 28 14 chr9 37948799 37949082 -104322362 - AluJo SINE Alu -25 287 1 1587 148 111 7 chr9 37949177 37949447 -104321997 + AluJb SINE Alu 1 298 -14 917 130 35 59 chr9 37949747 37949916 -104321528 + L1PA15 LINE L1 6001 6165 0 439 242 65 17 chr9 37949918 37949933 -104321511 + L1MC/D LINE L1 5658 5671 -450 1858 176 3 0 chr9 37949933 37950229 -104321215 + AluJo SINE Alu 1 297 -15 439 242 65 17 chr9 37950229 37950248 -104321196 + L1MC/D LINE L1 5671 5688 -433 2093 98 0 54 chr9 37950248 37950564 -104320880 + AluSg SINE Alu 1 299 -11 439 242 65 17 chr9 37950564 37950695 -104320749 + L1MC/D LINE L1 5688 5824 -297 1259 139 106 14 chr9 37950705 37950784 -104320660 + MER30 DNA MER1_type 4 74 -156 2134 98 34 0 chr9 37950784 37951081 -104320363 + AluY SINE Alu 1 307 -4 1259 139 106 14 chr9 37951081 37951209 -104320235 + MER30 DNA MER1_type 74 230 0 774 211 0 8 chr9 37951508 37951636 -104319808 + FLAM_A SINE Alu 1 127 -6 822 196 26 74 chr9 37951803 37951992 -104319452 + LTR8A LTR ERV1 548 727 0 204 67 0 0 chr9 37952364 37952394 -104319050 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 6283 109 43 22 chr9 37952396 37954690 -104316754 - SVA Other Other -520 1383 3 306 220 30 0 chr9 37954706 37954806 -104316638 + GA-rich Low_complexity Low_complexity 1 103 0 1809 167 13 3 chr9 37955562 37955867 -104315577 + AluSx SINE Alu 1 308 -4 1392 148 0 5 chr9 37955876 37956092 -104315352 + MER4D LTR ERV1 10 224 -679 1432 160 12 4 chr9 37956118 37956362 -104315082 + MER4D LTR ERV1 441 686 -217 2564 146 7 36 chr9 37956369 37956787 -104314657 - LTR9 LTR ERV1 0 612 207 6863 127 10 5 chr9 37956854 37957840 -104313604 - HUERS-P3b LTR ERV1 -473 6945 5955 * 19973 157 44 53 chr9 37957837 37959588 -104311856 - HUERS-P3b LTR ERV1 -1597 5821 4056 2368 99 0 3 chr9 37959588 37959892 -104311552 - AluSp SINE Alu -10 303 1 19973 157 44 53 chr9 37959892 37960878 -104310566 - HUERS-P3b LTR ERV1 -3362 4056 3063 2147 105 27 0 chr9 37960878 37961173 -104310271 - AluSx SINE Alu -9 303 1 19973 157 44 53 chr9 37961173 37963288 -104308156 - HUERS-P3b LTR ERV1 -4355 3063 1008 2349 89 0 35 chr9 37963288 37963601 -104307843 + AluSg SINE Alu 1 302 -8 19973 157 44 53 chr9 37963601 37963627 -104307817 - HUERS-P3b LTR ERV1 -6410 1008 983 3925 102 58 7 chr9 37963727 37964317 -104307127 + L1MA3 LINE L1 5686 6305 0 341 246 49 0 chr9 37964419 37964541 -104306903 + L1M4 LINE L1 4931 5058 -1088 1268 129 0 0 chr9 37964832 37965003 -104306441 - AluJb SINE Alu -11 301 131 2450 90 3 0 chr9 37965419 37965731 -104305713 + AluSp SINE Alu 1 313 0 1015 262 145 0 chr9 37965773 37966021 -104305423 + AluJb SINE Alu 3 286 -16 24 32 0 0 chr9 37966138 37966169 -104305275 + AT_rich Low_complexity Low_complexity 1 31 0 1563 172 90 0 chr9 37966438 37966706 -104304738 - AluJb SINE Alu -20 292 1 241 193 0 202 chr9 37966713 37966780 -104304664 - L1M4 LINE L1 -1989 4157 4121 2494 56 13 3 chr9 37966780 37967084 -104304360 + AluY SINE Alu 2 308 -3 241 193 0 202 chr9 37967084 37967130 -104304314 - L1M4 LINE L1 -2025 4121 4067 255 231 224 0 chr9 37967369 37967487 -104303957 + MIR SINE MIR 108 256 -6 592 146 5 160 chr9 37967490 37967525 -104303919 + MER104 DNA MER2_type 3 42 -1856 2152 103 17 0 chr9 37967525 37967817 -104303627 - AluSx SINE Alu -6 306 10 592 146 5 160 chr9 37967817 37967913 -104303531 + MER104 DNA MER2_type 42 93 -1805 1809 153 48 3 chr9 37967913 37968207 -104303237 - AluJb SINE Alu -4 308 2 592 146 5 160 chr9 37968207 37968280 -104303164 + MER104 DNA MER2_type 93 176 -4 317 348 28 21 chr9 37968632 37968773 -104302671 + L2 LINE L2 3122 3263 -9 1235 133 9 44 chr9 37969127 37969352 -104302092 - AluSq SINE Alu -11 302 86 591 57 0 0 chr9 37969352 37969422 -104302022 + AluS SINE Alu 8 77 -236 381 313 70 0 chr9 37969496 37969624 -104301820 + L2 LINE L2 2920 3056 -257 2170 120 0 0 chr9 37969854 37970169 -104301275 - AluSx SINE Alu 0 312 1 2156 129 0 29 chr9 37970389 37970700 -104300744 - AluSx SINE Alu -10 302 1 1029 209 47 5 chr9 37971336 37971547 -104299897 + AluJo SINE Alu 1 220 -92 1551 149 100 0 chr9 37971549 37971655 -104299789 + AluY SINE Alu 1 95 -216 1882 62 0 9 chr9 37971655 37971882 -104299562 + AluY SINE Alu 70 294 -17 1455 131 4 18 chr9 37971882 37972110 -104299334 + AluSg/x SINE Alu 71 296 -14 1551 149 100 0 chr9 37972110 37972263 -104299181 + AluY SINE Alu 94 287 -24 247 370 22 7 chr9 37972505 37972640 -104298804 - MIR SINE MIR -121 141 5 2115 124 0 0 chr9 37972711 37973009 -104298435 + AluSx SINE Alu 1 298 -14 1471 188 36 10 chr9 37973950 37974253 -104297191 + L1MA4 LINE L1 5990 6300 0 841 129 0 61 chr9 37974261 37974408 -104297036 + FLAM_C SINE Alu 2 139 -4 243 281 148 39 chr9 37974431 37974559 -104296885 - L3b LINE CR1 -118 1465 1324 360 269 31 8 chr9 37974596 37974726 -104296718 + L1ME3A LINE L1 5757 5889 -281 1687 170 3 14 chr9 37974735 37975023 -104296421 + AluJo SINE Alu 5 289 -23 2192 113 3 0 chr9 37975033 37975324 -104296120 + AluSq SINE Alu 1 292 -21 1608 211 0 7 chr9 37975326 37975624 -104295820 + AluJb SINE Alu 1 296 -16 2200 116 3 0 chr9 37977951 37978245 -104293199 - AluSx SINE Alu -17 295 1 26 30 0 0 chr9 37980016 37980049 -104291395 + AT_rich Low_complexity Low_complexity 1 33 0 2705 216 43 52 chr9 37980248 37980730 -104290714 - L1MC4 LINE L1 -11 8031 7546 2109 116 14 0 chr9 37980730 37981024 -104290420 - AluSx SINE Alu -14 298 1 2705 216 43 52 chr9 37981024 37981181 -104290263 - L1MC4 LINE L1 -496 7546 7389 2601 49 0 0 chr9 37981181 37981488 -104289956 - AluY SINE Alu -4 307 1 2705 216 43 52 chr9 37981488 37981710 -104289734 - L1MC4 LINE L1 -653 7389 7177 1815 172 0 7 chr9 37981776 37982061 -104289383 + AluJb SINE Alu 1 283 -29 798 167 0 0 chr9 37982139 37982259 -104289185 - FLAM_C SINE Alu -13 120 1 2197 109 0 3 chr9 37982588 37982881 -104288563 + AluSq SINE Alu 1 292 -21 378 0 0 0 chr9 37992862 37992904 -104278540 + (TG)n Simple_repeat Simple_repeat 2 43 0 196 207 80 0 chr9 37993534 37993595 -104277849 - MIR SINE MIR -101 161 95 1706 156 49 3 chr9 37994623 37994911 -104276533 - AluJb SINE Alu -11 301 1 928 157 108 16 chr9 37995586 37995771 -104275673 - MER20 DNA MER1_type 0 219 18 1941 144 0 0 chr9 37996987 37997316 -104274128 + AluJb SINE Alu 6 334 0 1548 152 37 0 chr9 37998187 37998430 -104273014 - L1PB4 LINE L1 -1 6155 5904 809 119 0 70 chr9 37998449 37998514 -104272930 - L1PB4 LINE L1 -365 5791 5740 1639 164 25 47 chr9 37998514 37998831 -104272613 - AluJo SINE Alu -2 310 1 809 119 0 70 chr9 37998831 37998908 -104272536 - L1PB4 LINE L1 -416 5740 5659 286 139 0 0 chr9 37998921 37998964 -104272480 + Charlie7 DNA MER1_type 1666 1708 -904 3247 247 74 18 chr9 37999000 38000019 -104271425 - L1MC3 LINE L1 -2 8040 6977 1082 232 128 36 chr9 38000022 38000784 -104270660 + Charlie7 DNA MER1_type 1718 2584 -28 1871 158 0 32 chr9 38000840 38001150 -104270294 - AluJo SINE Alu -12 300 1 2170 116 0 44 chr9 38001158 38001476 -104269968 - AluSx SINE Alu -8 304 1 194 239 56 42 chr9 38001956 38002027 -104269417 - L2 LINE L2 -802 2512 2441 1068 219 176 28 chr9 38002076 38002468 -104268976 - L1MC3 LINE L1 -1793 6015 5566 844 271 47 94 chr9 38002476 38002753 -104268691 - MLT1I LTR MaLR -58 351 88 231 176 0 0 chr9 38002796 38002830 -104268614 + Alu SINE Alu 1 34 -269 1774 116 0 4 chr9 38002830 38003072 -104268372 + AluSg/x SINE Alu 72 312 0 1164 144 62 0 chr9 38003076 38003284 -104268160 - L1PA16 LINE L1 -23 6143 5923 2665 108 27 87 chr9 38003387 38003510 -104267934 - L1PA16 LINE L1 -121 6045 5916 1718 159 7 14 chr9 38003510 38003800 -104267644 - AluJo SINE Alu -8 304 17 2665 108 27 87 chr9 38003800 38003828 -104267616 - L1PA16 LINE L1 -250 5916 5605 612 231 42 145 chr9 38003828 38004353 -104267091 - L1MC4a LINE L1 -1886 5922 5452 291 308 29 29 chr9 38004419 38004523 -104266921 + L2 LINE L2 2927 3030 -283 445 258 181 40 chr9 38004874 38005074 -104266370 - L1ME4a LINE L1 -151 5970 5800 1831 161 40 0 chr9 38005074 38005372 -104266072 - AluJo SINE Alu -2 310 1 445 258 181 40 chr9 38005372 38005497 -104265947 - L1ME4a LINE L1 -321 5800 5599 669 218 0 41 chr9 38005509 38005656 -104265788 - FLAM_C SINE Alu -2 141 1 436 268 145 25 chr9 38005658 38005893 -104265551 - L1ME4a LINE L1 -503 5618 5356 31 76 0 0 chr9 38006821 38006887 -104264557 + AT_rich Low_complexity Low_complexity 1 66 0 289 213 4 209 chr9 38007023 38007253 -104264191 - L1MC/D LINE L1 -307 5814 5727 369 315 203 20 chr9 38007509 38007804 -104263640 + L2 LINE L2 328 676 -2638 724 274 54 17 chr9 38007816 38008057 -104263387 - MIR SINE MIR -1 261 12 516 225 17 69 chr9 38008137 38008310 -104263134 + MER103 DNA DNA 2 165 -1 658 327 153 8 chr9 38008390 38008861 -104262583 + L2 LINE L2 1866 2404 -910 185 174 0 87 chr9 38009011 38009057 -104262387 + L2 LINE L2 3271 3312 -1 1756 144 27 20 chr9 38009435 38010134 -104261310 - L1MB7 LINE L1 -19 6165 5341 1583 131 141 58 chr9 38010134 38010266 -104261178 - MER44D DNA MER2_type -1883 608 488 1502 173 58 25 chr9 38010266 38010544 -104260900 - AluJo SINE Alu -25 287 1 1583 131 141 58 chr9 38010544 38010723 -104260721 - MER44D DNA MER2_type -2003 488 1 1756 144 27 20 chr9 38010723 38010895 -104260549 - L1MB7 LINE L1 -843 5341 5172 2180 198 52 68 chr9 38011052 38011614 -104259830 - MLT2B3 LTR ERVL 0 554 2 2282 104 0 16 chr9 38011862 38012179 -104259265 - AluSx SINE Alu 0 312 1 927 65 24 36 chr9 38012454 38012622 -104258822 + (TTCC)n Simple_repeat Simple_repeat 1 166 0 2302 74 7 14 chr9 38012629 38012926 -104258518 - AluY SINE Alu -16 295 1 1898 149 16 117 chr9 38013004 38013347 -104258097 + MLT1B LTR MaLR 5 298 -92 1861 142 0 4 chr9 38013347 38013621 -104257823 - AluJo SINE Alu -16 296 24 1898 149 16 117 chr9 38013621 38013706 -104257738 + MLT1B LTR MaLR 298 390 0 1893 142 7 0 chr9 38015083 38015401 -104256043 - AluSx SINE Alu 0 321 2 1544 120 139 15 chr9 38015846 38016105 -104255339 - AluSg1 SINE Alu -18 291 1 278 243 27 27 chr9 38016577 38016651 -104254793 + L2 LINE L2 3010 3083 -189 825 200 104 42 chr9 38016746 38017006 -104254438 + L1ME3A LINE L1 5894 6169 -1 204 200 0 0 chr9 38017267 38017302 -104254142 + (TGAG)n Simple_repeat Simple_repeat 1 35 0 366 287 181 32 chr9 38017361 38017549 -104253895 + MIR SINE MIR 40 255 -7 199 376 13 13 chr9 38017564 38017713 -104253731 + L2 LINE L2 2907 3055 -217 2355 112 0 0 chr9 38017975 38018288 -104253156 - AluSq SINE Alu 0 313 1 189 278 14 56 chr9 38018687 38018759 -104252685 + L2 LINE L2 3199 3267 -5 2379 72 3 10 chr9 38018777 38019084 -104252360 + AluSq SINE Alu 1 305 -8 279 320 130 28 chr9 38019701 38019717 -104251727 + L2 LINE L2 2049 2062 -1252 1578 159 23 55 chr9 38019717 38020025 -104251419 - AluJo SINE Alu -14 298 1 279 320 130 28 chr9 38020025 38020330 -104251114 + L2 LINE L2 2062 2403 -911 226 326 0 0 chr9 38020411 38020457 -104250987 + L2 LINE L2 3141 3186 -86 814 172 0 64 chr9 38020507 38020664 -104250780 - AluJb SINE Alu 0 312 166 1053 131 4 72 chr9 38020665 38020852 -104250592 - MLT1A1 LTR MaLR -188 177 1 246 317 34 91 chr9 38021130 38021338 -104250106 - L2 LINE L2 -562 2752 2557 271 186 51 0 chr9 38024761 38024820 -104246624 + MER117 DNA MER1_type 44 105 -92 206 338 13 0 chr9 38025630 38025707 -104245737 + GA-rich Low_complexity Low_complexity 4 81 0 22 0 0 0 chr9 38026314 38026336 -104245108 + AT_rich Low_complexity Low_complexity 1 22 0 285 75 0 0 chr9 38026917 38026957 -104244487 + (GA)n Simple_repeat Simple_repeat 1 40 0 561 187 91 91 chr9 38027107 38027294 -104244150 + MIR SINE MIR 20 206 -56 1558 169 63 3 chr9 38027779 38028081 -104243363 + MER33 DNA MER1_type 5 324 0 242 292 21 0 chr9 38028453 38028501 -104242943 + MIR SINE MIR 35 83 -125 255 276 41 102 chr9 38028518 38028616 -104242828 - L2 LINE L2 -25 3288 3197 207 0 0 0 chr9 38028916 38028939 -104242505 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 381 239 43 33 chr9 38028945 38029037 -104242407 - L2 LINE L2 -43 3229 3137 1805 175 67 94 chr9 38029210 38029689 -104241755 - MER31B LTR ERV1 0 466 1 1602 152 93 0 chr9 38030939 38031209 -104240235 - AluJo SINE Alu -4 308 14 988 67 8 0 chr9 38031978 38032097 -104239347 + AluSp SINE Alu 1 120 -193 226 0 0 56 chr9 38032097 38032133 -104239311 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 397 231 141 16 chr9 38032764 38032885 -104238559 - MIR3 SINE MIR -59 149 14 2281 93 7 0 chr9 38032949 38033238 -104238206 - AluSg SINE Alu -19 291 1 1585 238 92 43 chr9 38038742 38039397 -104232047 + L1MC4a LINE L1 5463 6149 -1659 184 349 86 33 chr9 38039596 38039748 -104231696 + L2 LINE L2 2889 3048 -224 207 179 26 0 chr9 38040408 38040447 -104230997 - MIR SINE MIR -25 237 198 478 273 77 7 chr9 38040460 38040603 -104230841 + L2 LINE L2 1843 1995 -1319 5021 140 48 14 chr9 38040603 38041595 -104229849 - L1MB7 LINE L1 0 6184 5158 22 0 0 0 chr9 38041601 38041623 -104229821 + AT_rich Low_complexity Low_complexity 1 22 0 897 152 8 0 chr9 38041628 38041760 -104229684 + FLAM_C SINE Alu 1 133 -10 3732 139 31 85 chr9 38041764 38042542 -104228902 - L1MB3 LINE L1 -3 6180 5445 1757 204 20 10 chr9 38042540 38042713 -104228731 - L1MB7 LINE L1 -974 5172 5002 * 2215 100 3 19 chr9 38042713 38043022 -104228422 - AluSq SINE Alu -9 304 1 1757 204 20 10 chr9 38043022 38043245 -104228199 - L1MB7 LINE L1 -1144 5002 4772 2594 259 84 33 chr9 38043245 38044310 -104227134 + L2 LINE L2 1990 3168 -145 540 295 152 5 chr9 38044314 38044524 -104226920 + MIR SINE MIR 21 261 -1 344 213 64 92 chr9 38044538 38044679 -104226765 + L2 LINE L2 3172 3308 -5 1401 147 6 97 chr9 38044682 38045001 -104226443 - AluJo SINE Alu -22 290 1 413 264 264 7 chr9 38046100 38046410 -104225034 - L2 LINE L2 -635 2679 2290 2321 62 31 0 chr9 38046550 38046842 -104224602 + AluY SINE Alu 1 301 -10 252 291 103 17 chr9 38049884 38050001 -104221443 + L2 LINE L2 3107 3233 -39 276 250 194 65 chr9 38050911 38051094 -104220350 + MIR SINE MIR 16 216 -46 392 214 22 11 chr9 38051194 38051283 -104220161 - L2 LINE L2 -8 3305 3216 480 312 64 6 chr9 38051346 38051503 -104219941 + MIR3 SINE MIR 23 188 -20 849 223 19 15 chr9 38051643 38051908 -104219536 - LTR37B LTR ERV1 -4 464 199 288 0 0 0 chr9 38052444 38052476 -104218968 + (TG)n Simple_repeat Simple_repeat 2 33 0 1698 166 24 0 chr9 38052873 38052999 -104218445 + AluSx SINE Alu 1 122 -190 396 0 0 0 chr9 38052999 38053043 -104218401 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 1698 166 24 0 chr9 38053043 38053205 -104218239 + AluSx SINE Alu 122 296 -16 1994 90 10 14 chr9 38053397 38053686 -104217758 - AluY SINE Alu -4 307 20 464 292 15 15 chr9 38053982 38054112 -104217332 - L2 LINE L2 -4 3268 3139 1172 214 38 13 chr9 38054191 38054429 -104217015 + MIR SINE MIR 8 251 -11 2140 117 10 0 chr9 38054843 38055152 -104216292 - AluSx SINE Alu 0 312 1 1618 125 0 104 chr9 38055690 38056017 -104215427 - AluJb SINE Alu -19 293 1 2494 167 87 10 chr9 38056021 38056525 -104214919 - L1MB7 LINE L1 0 6184 5642 520 266 39 110 chr9 38056794 38057129 -104214315 + L1ME4a LINE L1 5798 6108 -13 531 167 10 0 chr9 38057360 38057462 -104213982 + L1MB8 LINE L1 6076 6178 0 1906 93 0 0 chr9 38057484 38057732 -104213712 + AluSx SINE Alu 1 248 -64 316 98 478 0 chr9 38057734 38057826 -104213618 - MER53 DNA DNA -53 136 1 185 280 80 60 chr9 38058686 38058786 -104212658 - L2 LINE L2 0 3313 3212 598 114 24 41 chr9 38058786 38058909 -104212535 - L1MA8 LINE L1 -2 6289 6169 985 261 63 44 chr9 38058912 38059322 -104212122 + L1PBa LINE L1 -15 402 -5802 6289 173 32 24 chr9 38059425 38061076 -104210368 + L1PBa LINE L1 4 1110 -5094 2149 95 0 20 chr9 38061076 38061380 -104210064 - AluSx SINE Alu -14 298 1 6289 173 32 24 chr9 38061380 38061936 -104209508 + L1PBa LINE L1 1110 1660 -4544 255 61 0 0 chr9 38062139 38062172 -104209272 + (TG)n Simple_repeat Simple_repeat 2 34 0 1704 89 20 0 chr9 38064869 38065117 -104206327 - L1MA3 LINE L1 0 6305 6053 4566 114 19 0 chr9 38065571 38066246 -104205198 - L1PA14 LINE L1 -1 6160 5473 240 307 50 30 chr9 38066870 38066971 -104204473 - MIR SINE MIR -59 149 47 945 102 31 0 chr9 38068777 38068986 -104202458 - FLAM_C SINE Alu 0 214 2 204 336 8 16 chr9 38068986 38069029 -104202415 + CT-rich Low_complexity Low_complexity 3 180 0 216 271 0 0 chr9 38069100 38069148 -104202296 + CT-rich Low_complexity Low_complexity 3 50 0 2066 99 0 7 chr9 38069497 38069803 -104201641 + AluSg SINE Alu 1 304 0 1780 153 13 0 chr9 38073206 38073507 -104197937 + AluSq SINE Alu 1 305 -8 1243 126 16 0 chr9 38073647 38073838 -104197606 + AluSg/x SINE Alu 110 303 -9 210 227 0 0 chr9 38075802 38075846 -104195598 + G-rich Low_complexity Low_complexity 1 44 0 1963 124 3 3 chr9 38077009 38077307 -104194137 + AluSx SINE Alu 7 304 -8 216 343 61 10 chr9 38077459 38077558 -104193886 - L2 LINE L2 -9 3304 3201 2212 93 0 3 chr9 38080400 38080701 -104190743 - AluSx SINE Alu -12 300 1 222 172 35 17 chr9 38085681 38085739 -104185705 + (TTG)n Simple_repeat Simple_repeat 2 60 0 304 377 24 18 chr9 38085788 38085955 -104185489 - L2 LINE L2 -208 3064 2897 2162 122 0 0 chr9 38085964 38086268 -104185176 + AluSx SINE Alu 1 304 -8 913 285 12 23 chr9 38086279 38086535 -104184909 + MIR SINE MIR 3 255 -7 255 335 226 14 chr9 38086465 38086823 -104184621 - L2 LINE L2 -357 2957 2524 * 530 310 85 10 chr9 38089856 38090056 -104181388 + MIR SINE MIR 46 260 -2 383 342 77 26 chr9 38090033 38090343 -104181101 - L2 LINE L2 -522 2792 2467 * 2219 23 0 4 chr9 38090385 38090642 -104180802 + L1PA3 LINE L1 5897 6152 -3 186 43 0 0 chr9 38090668 38090691 -104180753 + (GAAAA)n Simple_repeat Simple_repeat 3 25 0 469 248 107 7 chr9 38090725 38090874 -104180570 - L1ME1 LINE L1 -6 6160 5997 971 279 48 85 chr9 38090876 38091413 -104180031 - L2 LINE L2 -5 3267 2778 2053 105 24 0 chr9 38091413 38091709 -104179735 - AluSx SINE Alu -9 303 1 971 279 48 85 chr9 38091709 38092019 -104179425 - L2 LINE L2 -494 2778 2458 2029 122 0 0 chr9 38092152 38092448 -104178996 + AluSx SINE Alu 1 296 -16 200 206 0 0 chr9 38095437 38095471 -104175973 + polypyrimidine Low_complexity Low_complexity 2 35 0 24 0 0 0 chr9 38095775 38095799 -104175645 + AT_rich Low_complexity Low_complexity 1 24 0 2426 80 0 3 chr9 38100108 38100420 -104171024 - AluY SINE Alu 0 311 1 12127 180 17 17 chr9 38103149 38104291 -104167153 + L1PB3 LINE L1 2753 3893 -2261 2262 102 7 0 chr9 38104291 38104586 -104166858 + AluSg SINE Alu 1 297 -13 12127 180 17 17 chr9 38104586 38106839 -104164605 + L1PB3 LINE L1 3893 6148 -6 1710 123 33 60 chr9 38106848 38107181 -104164263 - L1MA8 LINE L1 -3 6288 5965 961 107 13 13 chr9 38107181 38107331 -104164113 + L1MA8 LINE L1 5805 5954 -346 877 151 8 0 chr9 38107568 38107694 -104163750 - FLAM_C SINE Alu -6 127 1 2116 118 64 22 chr9 38107930 38108287 -104163157 - THE1C LTR MaLR 0 375 4 1657 162 20 26 chr9 38109165 38109467 -104161977 - AluJo SINE Alu -12 300 1 502 266 56 0 chr9 38109563 38109706 -104161738 - MIR SINE MIR -49 213 63 529 273 42 6 chr9 38109714 38109879 -104161565 - MIR SINE MIR -3 259 89 342 215 15 0 chr9 38110053 38110118 -104161326 - MIR SINE MIR -187 75 10 24 67 0 0 chr9 38111173 38111218 -104160226 + AT_rich Low_complexity Low_complexity 1 45 0 5636 184 92 86 chr9 38112033 38113569 -104157875 + L1MB7 LINE L1 2184 3752 -2630 2074 118 24 0 chr9 38113569 38113865 -104157579 + AluSx SINE Alu 1 303 -9 5636 184 92 86 chr9 38113865 38114278 -104157166 + L1MB7 LINE L1 3752 4161 -2221 2093 170 36 44 chr9 38114273 38114472 -104156972 + L1MB7 LINE L1 5078 5277 -1105 * 1744 159 33 13 chr9 38114472 38114774 -104156670 - AluJo SINE Alu -2 310 3 2093 170 36 44 chr9 38114774 38115079 -104156365 + L1MB7 LINE L1 5277 5578 -804 274 140 0 0 chr9 38115068 38115118 -104156326 + L1PA16 LINE L1 5954 6003 -163 * 312 167 17 0 chr9 38115126 38115186 -104156258 + L1PA16 LINE L1 6097 6157 -9 4368 192 26 7 chr9 38115193 38116027 -104155417 + L1MB7 LINE L1 5555 6404 -16 425 322 63 42 chr9 38116453 38116692 -104154752 + L2 LINE L2 3028 3271 -1 246 348 70 35 chr9 38116861 38116976 -104154468 + L2 LINE L2 3144 3262 -10 21 0 0 0 chr9 38117219 38117240 -104154204 + AT_rich Low_complexity Low_complexity 1 21 0 857 290 92 27 chr9 38117733 38118181 -104153263 - L1MC4a LINE L1 -1923 5885 5409 315 298 10 0 chr9 38118151 38118255 -104153189 - L1P LINE L1 -782 5384 5280 * 536 198 175 63 chr9 38118376 38118628 -104152816 - L1MC4a LINE L1 -1823 5985 5706 21 0 0 0 chr9 38118709 38118730 -104152714 + AT_rich Low_complexity Low_complexity 1 21 0 1799 160 173 14 chr9 38118779 38119148 -104152296 - MSTA LTR MaLR 0 428 1 494 285 33 7 chr9 38119259 38119410 -104152034 + MIR SINE MIR 35 189 -73 216 359 7 69 chr9 38119430 38119575 -104151869 + L2 LINE L2 3137 3272 0 202 331 38 60 chr9 38120181 38120314 -104151130 - L3 LINE CR1 -2 1575 1446 1100 52 7 0 chr9 38120513 38120648 -104150796 - L1PA12 LINE L1 -7 6161 6026 650 181 113 0 chr9 38121101 38121234 -104150210 + MIR SINE MIR 115 262 0 282 309 7 43 chr9 38172805 38172982 -104098462 + CT-rich Low_complexity Low_complexity 6 293 0 237 286 38 19 chr9 38174289 38174394 -104097050 + MIR SINE MIR 107 213 -49 204 369 65 36 chr9 38174713 38174881 -104096563 - L2 LINE L2 -202 3070 2898 377 270 9 0 chr9 38174928 38175039 -104096405 - L1MEd LINE L1 -5301 818 707 2783 26 0 0 chr9 38175103 38175414 -104096030 + AluYa5 SINE Alu 1 311 0 352 301 49 0 chr9 38175774 38175897 -104095547 - L1MEd LINE L1 -5413 706 578 756 266 89 59 chr9 38175919 38176257 -104095187 - L1MEd LINE L1 -5599 520 173 2318 102 0 0 chr9 38177054 38177347 -104094097 + AluSg SINE Alu 1 293 -17 406 198 104 28 chr9 38177392 38177498 -104093946 + L1MC4a LINE L1 5806 5919 -1889 806 157 8 30 chr9 38177678 38177812 -104093632 - FLAM_C SINE Alu -1 132 2 234 0 0 0 chr9 38177814 38177840 -104093604 + (A)n Simple_repeat Simple_repeat 1 26 0 33 0 0 0 chr9 38179278 38179311 -104092133 + AT_rich Low_complexity Low_complexity 1 33 0 861 144 0 0 chr9 38179311 38179429 -104092015 - FLAM_C SINE Alu -15 118 1 2490 61 0 0 chr9 38179442 38179735 -104091709 - AluY SINE Alu 0 311 19 468 282 87 25 chr9 38180200 38180558 -104090886 + L1ME4a LINE L1 5739 6118 -3 198 0 0 0 chr9 38181215 38181237 -104090207 + (TGGA)n Simple_repeat Simple_repeat 2 23 0 745 176 17 0 chr9 38185882 38186001 -104085443 + FLAM_C SINE Alu 5 125 -18 17490 136 31 20 chr9 38186023 38188484 -104082960 + L1 LINE L1 18 2513 -5052 2488 84 0 0 chr9 38188484 38188792 -104082652 + AluY SINE Alu 1 308 -3 17490 136 31 20 chr9 38188792 38189105 -104082339 + L1 LINE L1 2513 2821 -4744 1675 157 187 49 chr9 38189118 38189589 -104081855 - LTR10A LTR ERV1 -61 548 13 12008 111 29 71 chr9 38189599 38192612 -104078832 - Harlequin LTR ERV1 -2 6647 2066 2665 46 0 0 chr9 38192612 38192919 -104078525 - AluY SINE Alu -4 307 1 12008 111 29 71 chr9 38192919 38194228 -104077216 - Harlequin LTR ERV1 -4583 2066 704 488 178 19 6 chr9 38194231 38194388 -104077056 + CT-rich Low_complexity Low_complexity 2 160 0 996 204 79 138 chr9 38194678 38195300 -104076144 - Harlequin LTR ERV1 -6064 585 1 1785 177 207 36 chr9 38195309 38195777 -104075667 - LTR10A LTR ERV1 -61 548 1 1344 136 18 5 chr9 38195777 38195997 -104075447 + L1 LINE L1 2818 3040 -4525 1243 87 0 0 chr9 38196013 38196185 -104075259 - L1M1 LINE L1 -865 5440 5269 902 168 6 6 chr9 38196181 38196348 -104075096 + L1M1 LINE L1 6516 6682 -883 * 816 180 14 0 chr9 38196745 38196884 -104074560 + FAM SINE Alu 28 168 -17 258 246 77 93 chr9 38196921 38197169 -104074275 + HAL1 LINE L1 941 1184 -1323 564 251 30 25 chr9 38197218 38197417 -104074027 + HAL1 LINE L1 1428 1627 -880 587 273 257 6 chr9 38197420 38197735 -104073709 + L2 LINE L2 2919 3312 -1 216 220 20 0 chr9 38197816 38197866 -104073578 + L2 LINE L2 3222 3272 0 567 239 87 48 chr9 38199085 38199374 -104072070 + L1MC5 LINE L1 7629 7928 -33 2402 187 36 49 chr9 38199631 38200195 -104071249 + L1ME1 LINE L1 5526 6257 -77 180 111 0 0 chr9 38200195 38200222 -104071222 + (TG)n Simple_repeat Simple_repeat 2 28 0 2402 187 36 49 chr9 38200222 38200260 -104071184 + L1ME1 LINE L1 6257 6294 -40 486 258 28 28 chr9 38200263 38200441 -104071003 + L1ME3A LINE L1 5993 6170 0 1354 245 35 43 chr9 38200529 38200717 -104070727 - MLT1J2 LTR MaLR -78 372 187 2323 92 0 19 chr9 38200717 38201031 -104070413 - AluSc SINE Alu -1 308 1 1354 245 35 43 chr9 38201031 38201217 -104070227 - MLT1J2 LTR MaLR -263 187 1 712 214 0 8 chr9 38202032 38202158 -104069286 - FLAM_C SINE Alu -17 126 2 372 297 230 0 chr9 38202396 38202605 -104068839 + MIR SINE MIR 6 262 0 192 253 77 66 chr9 38203184 38203275 -104068169 - L2 LINE L2 -25 3247 3156 180 225 25 0 chr9 38203763 38203803 -104067641 - L2 LINE L2 -6 3307 3267 320 346 39 0 chr9 38205088 38205192 -104066252 - L2 LINE L2 -11 3261 3154 1904 98 29 0 chr9 38205230 38205505 -104065939 + L1MA7 LINE L1 6009 6291 0 678 157 22 30 chr9 38205781 38205915 -104065529 + L1MB5 LINE L1 6034 6166 -8 2155 119 0 10 chr9 38205948 38206251 -104065193 + AluSq SINE Alu 1 300 -13 2942 150 50 29 chr9 38206796 38207350 -104064094 + L1MB4 LINE L1 5609 6174 -6 1379 253 73 62 chr9 38207672 38208488 -104062956 - L1ME4a LINE L1 -3 6118 5294 407 316 106 5 chr9 38208508 38208726 -104062718 - L1ME4a LINE L1 -893 5253 5014 867 178 6 0 chr9 38210383 38210540 -104060904 - AluSg/x SINE Alu -17 295 138 2285 116 0 0 chr9 38211272 38211574 -104059870 + AluSx SINE Alu 1 302 -10 223 253 32 11 chr9 38212301 38212396 -104059048 + A-rich Low_complexity Low_complexity 5 101 0 2165 127 0 0 chr9 38213067 38213351 -104058093 + AluSx SINE Alu 1 284 -28 272 294 193 0 chr9 38214329 38214438 -104057006 - L2 LINE L2 -4 3268 3139 1743 150 0 26 chr9 38214726 38215039 -104056405 - AluSx SINE Alu -7 305 1 288 148 0 0 chr9 38215087 38215148 -104056296 + (T)n Simple_repeat Simple_repeat 1 61 0 218 135 54 0 chr9 38215216 38215253 -104056191 + (CCCTG)n Simple_repeat Simple_repeat 2 40 0 228 196 0 0 chr9 38216343 38216394 -104055050 - L1MB5 LINE L1 -21 6153 6103 600 202 17 17 chr9 38216571 38216714 -104054730 + L1ME2 LINE L1 6030 6181 -3 2295 104 10 0 chr9 38216884 38217183 -104054261 - AluSx SINE Alu -5 307 6 4295 109 43 0 chr9 38217514 38218145 -104053299 - Tigger1 DNA MER2_type -1514 904 247 310 322 81 56 chr9 38218262 38218585 -104052859 + L2 LINE L2 2450 2780 -534 1566 120 132 8 chr9 38218588 38218854 -104052590 + AluSg SINE Alu 1 299 -11 248 160 20 0 chr9 38218854 38218904 -104052540 + LTR37A LTR ERV1 376 426 0 2337 77 21 0 chr9 38219758 38220045 -104051399 - AluSx SINE Alu -19 293 1 1175 175 86 77 chr9 38220075 38220413 -104051031 - MER50 LTR ERV1 0 734 394 3475 133 82 38 chr9 38220625 38221232 -104050212 - MER51A LTR ERV1 0 634 1 284 182 61 30 chr9 38221238 38221304 -104050140 - MER50 LTR ERV1 -657 77 10 1674 147 84 23 chr9 38221310 38221657 -104049787 + THE1C LTR MaLR 8 375 0 237 65 0 0 chr9 38221834 38221865 -104049579 + (CACCC)n Simple_repeat Simple_repeat 2 32 0 25 0 0 0 chr9 38222062 38222087 -104049357 + GC_rich Low_complexity Low_complexity 1 25 0 210 37 0 0 chr9 38222358 38222385 -104049059 + (CCG)n Simple_repeat Simple_repeat 3 29 0 258 298 48 12 chr9 38223102 38223186 -104048258 + L2 LINE L2 3154 3240 -32 299 161 259 0 chr9 38223196 38223277 -104048167 - MER51C LTR ERV1 -11 629 528 1899 106 6 77 chr9 38223910 38224222 -104047222 + AluSx SINE Alu 1 290 -22 401 115 0 26 chr9 38224409 38224499 -104046945 - MER53 DNA DNA -2 187 4 1713 152 55 7 chr9 38224923 38225213 -104046231 - L1MB3 LINE L1 -19 6164 5861 3456 89 20 0 chr9 38225228 38225678 -104045766 - L1PA14 LINE L1 0 6161 5703 2982 154 54 65 chr9 38225683 38225738 -104045706 - L1MB3 LINE L1 -308 5875 5821 2183 128 3 0 chr9 38225738 38226044 -104045400 - AluSx SINE Alu -5 307 1 2982 154 54 65 chr9 38226044 38226272 -104045172 - L1MB3 LINE L1 -362 5821 5592 207 0 0 0 chr9 38226272 38226295 -104045149 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2982 154 54 65 chr9 38226295 38226425 -104045019 - L1MB3 LINE L1 -591 5592 5462 2096 113 7 0 chr9 38226425 38226709 -104044735 + AluSx SINE Alu 1 286 -26 2982 154 54 65 chr9 38226709 38227134 -104044310 - L1MB3 LINE L1 -721 5462 5042 34 24 0 0 chr9 38227135 38227176 -104044268 + AT_rich Low_complexity Low_complexity 1 41 0 471 35 69 52 chr9 38227176 38227350 -104044094 + (TA)n Simple_repeat Simple_repeat 1 177 0 250 198 62 0 chr9 38227352 38227448 -104043996 + (CTATA)n Simple_repeat Simple_repeat 2 103 0 470 11 65 69 chr9 38227567 38227848 -104043596 + (TA)n Simple_repeat Simple_repeat 1 279 0 353 47 128 0 chr9 38227865 38228013 -104043431 + (TA)n Simple_repeat Simple_repeat 2 168 0 * 471 153 23 17 chr9 38227996 38228172 -104043272 + (TATAA)n Simple_repeat Simple_repeat 1 177 0 537 119 36 28 chr9 38228199 38228734 -104042710 + (TTATA)n Simple_repeat Simple_repeat 1 539 0 3519 188 14 4 chr9 38228736 38229442 -104042002 - L1MB3 LINE L1 -1115 5031 4319 824 163 33 141 chr9 38231430 38231700 -104039744 - L1MB3 LINE L1 -1810 4336 4096 2018 120 0 60 chr9 38231703 38232020 -104039424 + AluSx SINE Alu 2 299 -13 2115 88 54 14 chr9 38232022 38232317 -104039127 + AluSc SINE Alu 1 307 -2 2054 143 13 0 chr9 38232450 38232751 -104038693 + AluSx SINE Alu 1 305 -7 1933 104 184 32 chr9 38233593 38233909 -104037535 - THE1B LTR MaLR 0 364 1 488 165 35 0 chr9 38233914 38233999 -104037445 - MLT1H LTR MaLR -8 541 454 248 306 69 0 chr9 38234020 38234092 -104037352 - MARNA DNA Mariner -417 169 93 1833 166 0 0 chr9 38234740 38235030 -104036414 + AluSx SINE Alu 1 290 -22 227 280 61 38 chr9 38235517 38235649 -104035795 + MER5A DNA MER1_type 53 187 -2 * 513 214 7 14 chr9 38235546 38235662 -104035782 - MER5A DNA MER1_type -71 118 4 730 276 103 15 chr9 38236044 38236240 -104035204 - L1ME4a LINE L1 0 6121 5944 4810 78 12 35 chr9 38236240 38236293 -104035151 - L1PB2 LINE L1 -8 6143 6090 2201 127 0 3 chr9 38236293 38236607 -104034837 - AluSq SINE Alu 0 313 1 4810 78 12 35 chr9 38236607 38237221 -104034223 - L1PB2 LINE L1 -61 6090 5490 2151 134 0 0 chr9 38237221 38237520 -104033924 - AluSx SINE Alu -13 299 1 4810 78 12 35 chr9 38237520 38237541 -104033903 - L1PB2 LINE L1 -661 5490 5470 730 276 103 15 chr9 38237541 38237799 -104033645 - L1ME4a LINE L1 -177 5944 5430 2272 118 3 10 chr9 38237897 38238210 -104033234 - AluSq SINE Alu -2 311 1 1537 132 34 48 chr9 38238223 38238518 -104032926 + L1MB1 LINE L1 5873 6163 -5 281 350 101 46 chr9 38238782 38239019 -104032425 + L2 LINE L2 2937 3186 -86 26 30 0 0 chr9 38239118 38239151 -104032293 + AT_rich Low_complexity Low_complexity 1 33 0 1947 201 59 0 chr9 38239191 38239598 -104031846 + L1M4 LINE L1 3878 4308 -1838 938 164 12 0 chr9 38239598 38239763 -104031681 + L1MB7 LINE L1 6018 6184 0 341 286 0 24 chr9 38239873 38239957 -104031487 + L2 LINE L2 3187 3268 -4 25 31 0 0 chr9 38240242 38240274 -104031170 + AT_rich Low_complexity Low_complexity 1 32 0 1893 162 3 19 chr9 38240275 38240584 -104030860 + AluJb SINE Alu 1 304 -8 417 331 7 15 chr9 38240850 38240986 -104030458 + L2 LINE L2 1097 1231 -2083 407 291 102 64 chr9 38241412 38241773 -104029671 + L2 LINE L2 1249 1623 -1691 455 182 5 44 chr9 38241900 38242013 -104029431 + MLT1L LTR MaLR 390 434 -33 651 254 44 19 chr9 38242300 38242505 -104028939 + HAL1 LINE L1 1285 1494 -1013 1038 163 132 11 chr9 38242513 38242703 -104028741 + AluJb SINE Alu 1 213 -99 477 263 86 23 chr9 38243215 38243390 -104028054 - MIR SINE MIR -12 250 65 21 36 0 0 chr9 38243533 38243561 -104027883 + AT_rich Low_complexity Low_complexity 1 28 0 886 118 0 16 chr9 38243673 38243800 -104027644 + FLAM_C SINE Alu 1 125 -18 342 297 148 0 chr9 38243970 38244098 -104027346 + L2 LINE L2 3161 3307 -6 214 391 128 8 chr9 38245073 38245206 -104026238 - L2 LINE L2 -8 3264 3116 2485 62 0 7 chr9 38245344 38245653 -104025791 + AluY SINE Alu 1 307 -4 271 324 0 29 chr9 38246210 38246315 -104025129 + MIR SINE MIR 20 121 -141 288 213 67 0 chr9 38246330 38246405 -104025039 - MER116 DNA Mariner 0 80 1 187 250 102 93 chr9 38246406 38246514 -104024930 + MIR SINE MIR 154 262 0 383 0 21 0 chr9 38246631 38246678 -104024766 + (TTG)n Simple_repeat Simple_repeat 1 48 0 1998 124 0 0 chr9 38246729 38246988 -104024456 - AluSx SINE Alu -53 259 1 2094 136 14 0 chr9 38247291 38247585 -104023859 - AluJb SINE Alu -14 298 1 988 192 27 63 chr9 38248105 38248443 -104023001 - L1M LINE L1 -833 5313 5006 67 42 0 0 chr9 38248748 38248843 -104022601 + AT_rich Low_complexity Low_complexity 1 95 0 326 331 73 0 chr9 38248843 38248967 -104022477 - MIR3 SINE MIR -66 142 10 2293 94 0 3 chr9 38248990 38249276 -104022168 + AluSc SINE Alu 7 291 -18 380 271 200 0 chr9 38249703 38249873 -104021571 - MIR SINE MIR -12 250 47 1873 138 11 14 chr9 38250341 38250624 -104020820 - AluJo SINE Alu -13 299 18 258 229 0 0 chr9 38251108 38251178 -104020266 + (TATG)n Simple_repeat Simple_repeat 4 73 0 186 43 0 0 chr9 38252117 38252140 -104019304 + (TTCC)n Simple_repeat Simple_repeat 3 25 0 2220 112 20 3 chr9 38253895 38254198 -104017246 - AluSq SINE Alu -5 308 1 4390 157 27 11 chr9 38254198 38255038 -104016406 + L1MB8 LINE L1 5324 6177 -1 2435 89 0 3 chr9 38255224 38255527 -104015917 - AluSx SINE Alu -10 302 1 1974 134 10 23 chr9 38255729 38256028 -104015416 - AluSx SINE Alu -17 295 1 2405 86 0 3 chr9 38256446 38256747 -104014697 - AluY SINE Alu -11 300 1 820 290 22 4 chr9 38256763 38256994 -104014450 - MIR SINE MIR -26 236 2 334 330 85 28 chr9 38256999 38257211 -104014233 + L2 LINE L2 2550 2773 -541 2168 104 0 13 chr9 38257217 38257515 -104013929 - AluY SINE Alu -17 294 1 929 148 21 151 chr9 38257515 38257845 -104013599 - L1M4 LINE L1 -812 5334 5047 2262 112 0 0 chr9 38257853 38258148 -104013296 - AluSq SINE Alu -18 295 1 2503 65 0 13 chr9 38258262 38258572 -104012872 - AluY SINE Alu -5 306 1 190 239 0 65 chr9 38258630 38258676 -104012768 - L2 LINE L2 -29 3243 3201 2308 96 20 3 chr9 38259263 38259566 -104011878 + AluSq SINE Alu 1 308 -5 186 43 0 0 chr9 38261321 38261344 -104010100 + (GGAA)n Simple_repeat Simple_repeat 3 25 0 258 229 0 0 chr9 38262283 38262353 -104009091 + (CATA)n Simple_repeat Simple_repeat 4 73 0 1873 138 11 14 chr9 38262837 38263120 -104008324 + AluJo SINE Alu 18 299 -13 380 271 200 0 chr9 38263588 38263758 -104007686 + MIR SINE MIR 47 250 -12 2293 94 0 3 chr9 38264185 38264471 -104006973 - AluSc SINE Alu -18 291 7 326 331 73 0 chr9 38264494 38264618 -104006826 + MIR3 SINE MIR 10 142 -66 67 42 0 0 chr9 38264618 38264713 -104006731 + AT_rich Low_complexity Low_complexity 1 95 0 988 192 27 63 chr9 38265018 38265356 -104006088 + L1M4 LINE L1 5006 5330 -833 2094 136 14 0 chr9 38265876 38266170 -104005274 + AluJb SINE Alu 1 298 -14 226 288 62 0 chr9 38266195 38266341 -104005103 - L1ME4a LINE L1 -28 6093 5939 1239 83 0 0 chr9 38266356 38266501 -104004943 - AluSq/x SINE Alu -167 145 1 2393 158 11 34 chr9 38266511 38267040 -104004404 - L1MB8 LINE L1 -213 5965 5313 2277 121 0 0 chr9 38267040 38267338 -104004106 - AluSc SINE Alu -11 298 1 2393 158 11 34 chr9 38267338 38267606 -104003838 - L1MB8 LINE L1 -865 5313 5040 2069 134 3 13 chr9 38271480 38271785 -103999659 + AluSx SINE Alu 1 302 -10 238 287 205 31 chr9 38271793 38271988 -103999456 - L2 LINE L2 -785 2529 2301 465 48 0 0 chr9 38272026 38272088 -103999356 - AluY SINE Alu -11 300 239 385 360 80 34 chr9 38272123 38272509 -103998935 - L2 LINE L2 -17 3255 2852 2348 95 7 0 chr9 38272662 38272958 -103998486 + AluSq SINE Alu 1 298 -15 2246 124 0 0 chr9 38273077 38273375 -103998069 + AluSx SINE Alu 2 299 -13 2212 103 24 0 chr9 38273526 38273816 -103997628 + AluSx SINE Alu 1 297 -15 1990 123 17 24 chr9 38274510 38274803 -103996641 + AluJo SINE Alu 1 291 -21 2260 120 0 13 chr9 38274811 38275127 -103996317 + AluSx SINE Alu 1 312 0 546 323 236 6 chr9 38275130 38275591 -103995853 + L3 LINE CR1 709 1328 -249 890 247 189 42 chr9 38276062 38276463 -103994981 - L2 LINE L2 0 3313 2854 558 266 28 51 chr9 38276636 38276813 -103994631 + MIR SINE MIR 5 177 -85 331 194 69 14 chr9 38276944 38277016 -103994428 + L3 LINE CR1 1065 1140 -437 253 321 310 8 chr9 38277276 38277640 -103993804 - L2 LINE L2 -854 2460 1987 2206 105 7 16 chr9 38279275 38279581 -103991863 + AluSq SINE Alu 1 303 -10 247 247 140 47 chr9 38279827 38279977 -103991467 - L2 LINE L2 -1345 1969 1806 2357 103 0 0 chr9 38282185 38282485 -103988959 + AluSx SINE Alu 1 300 -12 220 333 167 0 chr9 38282562 38282682 -103988762 + MER91C DNA MER1_type 1 140 0 221 268 0 0 chr9 38283077 38283133 -103988311 + GA-rich Low_complexity Low_complexity 3 58 0 201 39 0 0 chr9 38284567 38284593 -103986851 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 28 0 0 0 chr9 38287276 38287304 -103984140 + AT_rich Low_complexity Low_complexity 1 28 0 519 224 56 8 chr9 38287386 38287511 -103983933 + FLAM_A SINE Alu 1 131 -2 350 201 144 58 chr9 38287955 38288094 -103983350 + MLT1L LTR MaLR 140 290 -325 384 244 200 22 chr9 38288176 38288401 -103983043 + MLT1L LTR MaLR 345 609 -6 2257 113 3 0 chr9 38288415 38288717 -103982727 + AluSg SINE Alu 1 303 -7 457 317 71 6 chr9 38288727 38288910 -103982534 + MIR SINE MIR 54 248 -14 2216 122 3 0 chr9 38289919 38290213 -103981231 + AluSx SINE Alu 1 295 -17 399 306 34 20 chr9 38290566 38290713 -103980731 - L1ME4a LINE L1 -248 5873 5725 981 119 0 0 chr9 38290713 38290839 -103980605 + FLAM_C SINE Alu 1 126 -17 324 0 0 0 chr9 38290887 38290923 -103980521 + (TA)n Simple_repeat Simple_repeat 2 37 0 420 276 122 17 chr9 38291041 38291222 -103980222 - L2 LINE L2 0 3313 3114 1353 248 78 27 chr9 38291621 38292072 -103979372 - MLT1J LTR MaLR -29 482 9 538 286 53 72 chr9 38292507 38292700 -103978744 + MIR SINE MIR 4 192 -70 2128 153 0 3 chr9 38292700 38293013 -103978431 + AluSx SINE Alu 1 312 0 538 286 53 72 chr9 38293013 38293081 -103978363 + MIR SINE MIR 192 260 -2 289 250 140 15 chr9 38293809 38293868 -103977576 + MER58C DNA MER1_type 63 113 -2307 741 193 18 0 chr9 38293868 38294039 -103977405 + L1MA7 LINE L1 6118 6291 0 289 250 140 15 chr9 38294039 38294115 -103977329 + MER58C DNA MER1_type 113 215 0 237 328 91 11 chr9 38294849 38295035 -103976409 - MIR SINE MIR -55 207 7 467 338 104 13 chr9 38296723 38296954 -103974490 - MIR SINE MIR 0 262 11 219 297 20 69 chr9 38298176 38298277 -103973167 - MIR3 SINE MIR -21 187 92 22 35 0 0 chr9 38300207 38300236 -103971208 + AT_rich Low_complexity Low_complexity 1 29 0 946 179 22 18 chr9 38300243 38300467 -103970977 + L1MD3 LINE L1 7771 7995 0 2001 137 3 0 chr9 38300517 38300824 -103970620 + AluJb SINE Alu 1 308 -4 1759 175 52 48 chr9 38300839 38301025 -103970419 + L1MC4 LINE L1 6973 7157 -885 1661 129 86 4 chr9 38301025 38301305 -103970139 + AluSx SINE Alu 1 303 -9 1759 175 52 48 chr9 38301305 38301557 -103969887 + L1MC4 LINE L1 7157 7413 -629 863 253 94 81 chr9 38301566 38301674 -103969770 - HAL1 LINE L1 -1553 954 849 2481 44 0 0 chr9 38301674 38301969 -103969475 + AluY SINE Alu 2 296 -15 863 253 94 81 chr9 38301969 38302477 -103968967 - HAL1 LINE L1 -1658 849 330 1821 98 4 0 chr9 38302501 38302755 -103968689 + AluSx SINE Alu 1 255 -57 970 151 16 54 chr9 38302786 38302971 -103968473 + AluJo SINE Alu 1 178 -134 479 266 188 0 chr9 38303398 38303552 -103967892 - MIR SINE MIR 0 262 80 815 212 30 0 chr9 38303619 38303784 -103967660 + FRAM SINE Alu 4 173 -3 1130 280 72 40 chr9 38303840 38304119 -103967325 - L1MEd LINE L1 -4880 1239 970 1440 192 10 26 chr9 38304119 38304282 -103967162 - AluJo SINE Alu -10 302 145 207 0 0 0 chr9 38304282 38304305 -103967139 + (CTTG)n Simple_repeat Simple_repeat 4 26 0 1440 192 10 26 chr9 38304305 38304448 -103966996 - AluJo SINE Alu -167 145 1 1130 280 72 40 chr9 38304448 38304851 -103966593 - L1MEd LINE L1 -5149 970 535 1724 160 10 10 chr9 38305089 38305382 -103966062 + AluJo SINE Alu 3 295 -17 1453 197 4 0 chr9 38305494 38305763 -103965681 - AluJo SINE Alu -16 296 27 689 180 0 43 chr9 38305787 38305926 -103965518 + FLAM_C SINE Alu 1 133 0 355 325 71 0 chr9 38305964 38306133 -103965311 - L1ME4a LINE L1 -251 5870 5690 850 249 63 89 chr9 38306198 38306548 -103964896 - MER102b DNA MER1_type 0 341 1 1705 173 3 0 chr9 38306934 38307234 -103964210 - AluJb SINE Alu -11 301 1 2118 112 3 6 chr9 38307609 38307922 -103963522 - AluSx SINE Alu 0 312 1 801 161 17 52 chr9 38308596 38308770 -103962674 - AluJb SINE Alu -144 168 1 300 213 88 150 chr9 38308985 38309134 -103962310 + L1M4 LINE L1 2722 2852 -3294 1103 160 0 17 chr9 38309134 38309309 -103962135 + FAM SINE Alu 1 172 -3 300 213 88 150 chr9 38309309 38309399 -103962045 + L1M4 LINE L1 2852 2946 -3200 507 269 19 58 chr9 38309446 38309479 -103961965 + MIR SINE MIR 7 40 -222 2309 85 10 0 chr9 38309479 38309784 -103961660 + AluY SINE Alu 2 309 -2 507 269 19 58 chr9 38309784 38309906 -103961538 + MIR SINE MIR 40 156 -106 607 298 126 59 chr9 38310754 38311005 -103960439 + L1M4 LINE L1 3051 3341 -2805 2394 79 0 0 chr9 38311005 38311308 -103960136 - AluSc SINE Alu -6 303 1 607 298 126 59 chr9 38311308 38311462 -103959982 + L1M4 LINE L1 3341 3483 -2663 1589 167 43 17 chr9 38311463 38311763 -103959681 + AluJo SINE Alu 1 308 -4 451 229 0 55 chr9 38312093 38312202 -103959242 + L2 LINE L2 3137 3239 -33 1903 149 17 0 chr9 38312258 38312554 -103958890 + AluJb SINE Alu 1 301 -11 265 294 91 52 chr9 38312560 38312791 -103958653 + L1M4 LINE L1 3798 4037 -2109 237 357 26 26 chr9 38312815 38312969 -103958475 + MER117 DNA MER1_type 2 155 -42 389 304 119 9 chr9 38313009 38313246 -103958198 + L1M4 LINE L1 4068 4335 -1811 2056 132 0 0 chr9 38313444 38313747 -103957697 + AluSx SINE Alu 1 303 -9 790 193 33 39 chr9 38313748 38313929 -103957515 + L1MA7 LINE L1 5942 6121 -170 689 210 45 13 chr9 38314022 38314179 -103957265 + L1MA10 LINE L1 6125 6286 -48 331 197 61 0 chr9 38314182 38314248 -103957196 - MER6 DNA MER2_type -2 863 794 377 180 16 0 chr9 38314268 38314329 -103957115 - MER6 DNA MER2_type -744 121 60 758 172 0 28 chr9 38314336 38314481 -103956963 + FLAM_C SINE Alu 2 142 -1 23 0 0 0 chr9 38314481 38314504 -103956940 + AT_rich Low_complexity Low_complexity 1 23 0 914 145 21 48 chr9 38314511 38314697 -103956747 + FRAM SINE Alu 1 176 0 295 197 61 0 chr9 38314698 38314764 -103956680 - MER6 DNA MER2_type -77 67 -2 259 340 14 75 chr9 38314914 38315015 -103956429 + L1MEd LINE L1 268 374 -5745 1995 121 3 10 chr9 38315015 38315313 -103956131 - AluSx SINE Alu -12 300 5 259 340 14 75 chr9 38315313 38315493 -103955951 + L1MEd LINE L1 374 532 -5587 2584 141 2 126 chr9 38315512 38316067 -103955377 + MER66B LTR ERV1 1 486 0 9038 220 98 90 chr9 38316067 38319687 -103951757 + MER66B-int LTR ERV1 1 3647 -3029 2003 69 69 7 chr9 38319687 38319975 -103951469 - L1MA1 LINE L1 0 6302 5997 1828 139 57 46 chr9 38319975 38320341 -103951103 + THE1C LTR MaLR 1 370 -5 9450 121 21 60 chr9 38320345 38321733 -103949711 + THE1C-int LTR MaLR 3 1319 -261 1769 172 3 0 chr9 38321733 38322030 -103949414 - AluSx SINE Alu -14 298 1 9450 121 21 60 chr9 38322030 38322283 -103949161 + THE1C-int LTR MaLR 1319 1580 0 1352 154 125 45 chr9 38322286 38322598 -103948846 + THE1C LTR MaLR 4 340 -35 216 0 0 0 chr9 38322601 38322625 -103948819 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 808 150 8 0 chr9 38322626 38322746 -103948698 - AluSg/x SINE Alu -34 276 156 3385 125 8 8 chr9 38322751 38323262 -103948182 + MER9 LTR ERVK 1 511 0 4134 87 15 46 chr9 38323265 38323737 -103947707 + HERVK9 LTR ERVK 18 468 -5448 2233 82 3 7 chr9 38323737 38324043 -103947401 + AluY SINE Alu 1 305 -6 4134 87 15 46 chr9 38324043 38324183 -103947261 + HERVK9 LTR ERVK 468 611 -5305 14915 85 9 7 chr9 38324183 38326122 -103945322 + HERVK9 LTR ERVK 1347 3290 -2626 4637 114 6 41 chr9 38326149 38326851 -103944593 + MER66-int LTR ERV1 5259 5935 -741 1135 135 78 26 chr9 38326851 38327044 -103944400 - MER51A LTR ERV1 0 634 432 2130 117 3 0 chr9 38327044 38327353 -103944091 + AluSq SINE Alu 1 310 -3 5029 119 92 7 chr9 38327353 38328298 -103943146 + L1P5 LINE L1 2181 3205 -3657 * 6230 163 16 56 chr9 38328292 38329198 -103942246 + L1P5 LINE L1 4600 5540 -1327 2066 109 0 7 chr9 38329198 38329492 -103941952 + AluSq SINE Alu 1 292 -21 6230 163 16 56 chr9 38329492 38330037 -103941407 + L1P5 LINE L1 5540 6105 -762 2106 107 10 7 chr9 38330037 38330346 -103941098 + AluSg SINE Alu 1 310 0 6230 163 16 56 chr9 38330346 38330548 -103940896 + L1P5 LINE L1 6105 6313 -554 2097 105 0 3 chr9 38330548 38330876 -103940568 + AluSq SINE Alu 1 327 0 6230 163 16 56 chr9 38330876 38331166 -103940278 + L1P5 LINE L1 6313 6493 -374 189 0 0 0 chr9 38331166 38331187 -103940257 + (TG)n Simple_repeat Simple_repeat 2 22 0 300 256 0 0 chr9 38331187 38331277 -103940167 + L1MC4 LINE L1 6614 6703 -1339 282 229 0 0 chr9 38331278 38331348 -103940096 + (TA)n Simple_repeat Simple_repeat 1 70 0 2513 107 3 16 chr9 38331348 38331723 -103939721 + L1PB1 LINE L1 5782 6151 0 307 211 11 33 chr9 38331806 38331896 -103939548 - L1MEc LINE L1 -4868 1528 1441 840 173 0 0 chr9 38331896 38332053 -103939391 + FLAM_C SINE Alu 1 157 0 1570 195 0 10 chr9 38332089 38332402 -103939042 - AluJo SINE Alu 0 312 3 22 35 0 0 chr9 38332441 38332470 -103938974 + AT_rich Low_complexity Low_complexity 1 29 0 4999 193 39 12 chr9 38332527 38333525 -103937919 + L1M4 LINE L1 1251 2275 -4290 1297 226 17 13 chr9 38333811 38333860 -103937584 + L1M4 LINE L1 2282 2329 -5237 2012 127 7 0 chr9 38333860 38334152 -103937292 + AluSq SINE Alu 1 294 -19 1297 226 17 13 chr9 38334152 38334477 -103936967 + L1M4 LINE L1 2329 2956 -4610 1444 195 54 86 chr9 38334478 38334779 -103936665 + L1M4 LINE L1 2798 3082 -4483 2166 102 3 0 chr9 38334779 38335074 -103936370 + AluSx SINE Alu 1 296 -16 1444 195 54 86 chr9 38335074 38335214 -103936230 + L1M4 LINE L1 3082 3225 -4340 288 247 67 95 chr9 38335335 38335607 -103935837 + MLT1H LTR MaLR 126 543 -47 1737 136 0 88 chr9 38335607 38335937 -103935507 - AluSx SINE Alu -11 301 1 288 247 67 95 chr9 38335937 38335969 -103935475 + MLT1H LTR MaLR 543 574 -16 241 263 160 13 chr9 38336011 38336055 -103935389 + L1M4 LINE L1 5440 5476 -2089 1601 170 3 31 chr9 38336055 38336349 -103935095 + AluJb SINE Alu 1 286 -26 241 263 160 13 chr9 38336349 38336460 -103934984 + L1M4 LINE L1 5476 5618 -1947 1336 248 33 0 chr9 38336495 38336798 -103934646 - L2 LINE L2 -570 2744 2432 964 117 7 0 chr9 38336809 38336954 -103934490 - AluSp/q SINE Alu -3 310 165 883 211 16 16 chr9 38337054 38337239 -103934205 + AluJb SINE Alu 116 300 -12 1310 237 58 20 chr9 38337244 38337298 -103934146 - L2 LINE L2 -962 2352 2301 2007 131 0 16 chr9 38337298 38337612 -103933832 + AluSx SINE Alu 1 309 -3 1310 237 58 20 chr9 38337612 38337903 -103933541 - L2 LINE L2 -1013 2301 1994 1715 173 0 0 chr9 38337983 38338278 -103933166 - AluJb SINE Alu -13 299 5 2710 187 78 116 chr9 38338366 38338600 -103932844 + L1MC5 LINE L1 6692 6933 -1028 8112 169 18 105 chr9 38338600 38340522 -103930922 + MER52A LTR ERV1 1 1755 0 2710 187 78 116 chr9 38340522 38340547 -103930897 + L1MC5 LINE L1 6933 6957 -1004 2137 93 0 0 chr9 38340547 38340825 -103930619 + AluSx SINE Alu 3 280 -32 189 0 0 0 chr9 38340825 38340846 -103930598 + (CAAT)n Simple_repeat Simple_repeat 4 24 0 1869 131 24 7 chr9 38340851 38341142 -103930302 + AluJb SINE Alu 1 296 -16 2710 187 78 116 chr9 38341142 38341434 -103930010 + L1MC5 LINE L1 6960 7262 -699 793 171 0 0 chr9 38341434 38341563 -103929881 - FLAM_A SINE Alu -4 129 1 2710 187 78 116 chr9 38341563 38341591 -103929853 + L1MC5 LINE L1 7262 7290 -671 1303 156 19 5 chr9 38341591 38341803 -103929641 + MER20 DNA MER1_type 1 215 -4 2710 187 78 116 chr9 38341803 38342084 -103929360 + L1MC5 LINE L1 7290 7504 -457 1596 139 21 14 chr9 38342084 38342371 -103929073 + AluJb SINE Alu 1 289 -23 2710 187 78 116 chr9 38342371 38342725 -103928719 + L1MC5 LINE L1 7504 7870 -91 1444 101 14 10 chr9 38342907 38343116 -103928328 - AluSq SINE Alu -23 290 81 188 0 0 69 chr9 38345147 38345176 -103926268 + (CCCG)n Simple_repeat Simple_repeat 4 30 0 21 82 0 0 chr9 38345269 38345318 -103926126 + GC_rich Low_complexity Low_complexity 1 49 0 40 49 0 0 chr9 38345522 38345583 -103925861 + GC_rich Low_complexity Low_complexity 1 61 0 604 182 94 69 chr9 38346333 38346536 -103924908 + MER3 DNA MER1_type 1 208 -1 2454 78 0 0 chr9 38350819 38351114 -103920330 + AluY SINE Alu 1 295 -16 2242 122 0 0 chr9 38352152 38352447 -103918997 + AluSx SINE Alu 1 295 -17 443 268 9 0 chr9 38352459 38352571 -103918873 + MER117 DNA MER1_type 14 126 -71 202 218 0 55 chr9 38353276 38353331 -103918113 + CT-rich Low_complexity Low_complexity 3 54 0 2052 117 0 51 chr9 38353571 38353887 -103917557 + AluSx SINE Alu 2 301 -11 219 217 11 98 chr9 38354026 38354118 -103917326 + L2 LINE L2 3229 3312 -1 472 276 30 0 chr9 38354135 38354269 -103917175 - L2 LINE L2 -587 2727 2590 231 358 57 26 chr9 38354495 38354569 -103916875 - L2 LINE L2 -2178 1136 1066 830 115 0 23 chr9 38354569 38354699 -103916745 + FLAM_C SINE Alu 2 128 -5 231 358 57 26 chr9 38354699 38354853 -103916591 - L2 LINE L2 -2248 1066 901 1036 164 0 0 chr9 38357638 38357797 -103913647 + AluJb SINE Alu 141 299 -13 1593 93 0 14 chr9 38360124 38360338 -103911106 + AluSq SINE Alu 91 301 -12 2016 116 62 0 chr9 38360399 38360691 -103910753 + AluSx SINE Alu 1 310 -2 1959 194 36 58 chr9 38361358 38361862 -103909582 + MLT1D LTR MaLR 1 493 -12 185 162 385 3 chr9 38361899 38362000 -103909444 + MIR SINE MIR 37 166 -66 403 315 144 88 chr9 38362011 38362362 -103909082 + L3 LINE CR1 410 740 -837 2089 118 21 0 chr9 38362362 38362668 -103908776 + AluSg SINE Alu 1 312 0 1723 194 6 13 chr9 38362674 38362988 -103908456 + AluJo SINE Alu 1 312 0 403 315 144 88 chr9 38362988 38363107 -103908337 + L3 LINE CR1 744 915 -662 269 234 104 13 chr9 38363128 38363205 -103908239 - MIR3 SINE MIR -27 181 98 2271 90 10 0 chr9 38363484 38363772 -103907672 + AluSx SINE Alu 1 291 -21 2093 90 60 0 chr9 38363797 38364114 -103907330 + AluSg SINE Alu 1 333 0 25 0 0 0 chr9 38364114 38364139 -103907305 + AT_rich Low_complexity Low_complexity 1 25 0 15139 101 43 9 chr9 38364467 38366707 -103904737 + Tigger1 DNA MER2_type 1 2165 -253 2092 79 57 11 chr9 38366707 38366987 -103904457 - AluY SINE Alu -18 293 1 2015 106 31 20 chr9 38366987 38367279 -103904165 - AluSx SINE Alu -17 295 1 15139 101 43 9 chr9 38367279 38367377 -103904067 + Tigger1 DNA MER2_type 2164 2418 0 1786 187 3 16 chr9 38367669 38367984 -103903460 - AluJo SINE Alu -1 311 1 662 167 0 45 chr9 38367984 38368116 -103903328 - FLAM_A SINE Alu -7 126 1 1285 97 0 12 chr9 38368160 38368325 -103903119 + AluY SINE Alu 1 163 -148 910 262 75 36 chr9 38368390 38368695 -103902749 + LTR16C LTR ERVL 5 321 -170 1998 138 7 13 chr9 38368720 38369025 -103902419 - AluJo SINE Alu -8 304 2 283 229 24 0 chr9 38369026 38369109 -103902335 - L1P5 LINE L1 -705 5446 5362 272 227 53 0 chr9 38369164 38369239 -103902205 - L1MC4a LINE L1 -1 7807 7729 209 238 0 0 chr9 38369284 38369326 -103902118 + (TA)n Simple_repeat Simple_repeat 2 43 0 1085 202 91 8 chr9 38369364 38369607 -103901837 - MLT2F LTR ERVL -59 604 342 2335 81 7 13 chr9 38369877 38370187 -103901257 - AluSx SINE Alu -4 308 1 578 219 19 45 chr9 38370476 38370631 -103900813 + MIR SINE MIR 6 156 -106 948 128 0 8 chr9 38370631 38370764 -103900680 + FLAM_C SINE Alu 1 132 -11 285 218 46 23 chr9 38370766 38370853 -103900591 + MIR SINE MIR 146 234 -28 460 319 46 15 chr9 38370912 38371367 -103900077 - L1MEc LINE L1 -1727 4488 4020 937 309 67 70 chr9 38371374 38371461 -103899983 - L1MEc LINE L1 -2483 3732 3646 2291 40 14 14 chr9 38371461 38371737 -103899707 + AluY SINE Alu 1 276 -35 251 0 59 0 chr9 38371742 38371776 -103899668 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 937 309 67 70 chr9 38371776 38372022 -103899422 - L1MEc LINE L1 -2573 3642 3397 2466 57 24 0 chr9 38372022 38372319 -103899125 - AluY SINE Alu -7 304 1 937 309 67 70 chr9 38372319 38372415 -103899029 - L1MEc LINE L1 -2818 3397 3302 2164 135 0 3 chr9 38372415 38372727 -103898717 - AluSx SINE Alu -1 311 1 937 309 67 70 chr9 38372727 38372770 -103898674 - L1MEc LINE L1 -2913 3302 3260 2135 125 0 35 chr9 38372770 38373089 -103898355 - AluJb SINE Alu -2 310 3 937 309 67 70 chr9 38373089 38373262 -103898182 - L1MEc LINE L1 -2955 3260 3093 408 280 6 19 chr9 38373357 38373373 -103898071 - L1MA10 LINE L1 0 6334 6319 748 239 22 0 chr9 38373373 38373553 -103897891 - L1ME1 LINE L1 -4 6162 5979 542 146 10 39 chr9 38373585 38373688 -103897756 - Tigger5 DNA MER2_type 0 2323 2224 345 143 0 18 chr9 38373682 38373738 -103897706 - Tigger5 DNA MER2_type -2268 55 1 * 492 320 68 37 chr9 38373755 38374049 -103897395 - L1MEc LINE L1 -3981 2415 2113 2461 78 0 0 chr9 38374207 38374502 -103896942 - AluSq SINE Alu -18 295 1 542 304 168 49 chr9 38374881 38375493 -103895951 - HAL1 LINE L1 -905 1602 918 981 142 75 47 chr9 38375928 38376140 -103895304 - MER20 DNA MER1_type -1 218 1 541 93 0 0 chr9 38376699 38376774 -103894670 + Alu SINE Alu 2 76 -233 792 152 8 18 chr9 38376848 38377016 -103894428 + LTR7 LTR ERV1 1 218 -232 839 171 70 21 chr9 38377185 38377372 -103894072 + LTR7 LTR ERV1 255 450 0 2043 199 40 24 chr9 38377372 38377824 -103893620 + HERVH LTR ERV1 1 459 -7254 3839 221 14 35 chr9 38377882 38379055 -103892389 + HERVH LTR ERV1 800 1807 -4847 21 71 0 0 chr9 38379055 38379097 -103892347 + AT_rich Low_complexity Low_complexity 1 42 0 387 258 57 75 chr9 38380169 38380328 -103891116 - MER21B LTR ERV1 -154 709 554 5623 55 42 24 chr9 38380334 38381100 -103890344 - LTR17 LTR ERV1 0 780 1 2353 55 0 0 chr9 38381100 38381392 -103890052 - HERV17 LTR ERV1 0 8626 8335 289 53 0 0 chr9 38381382 38381420 -103890024 - HERV17 LTR ERV1 -1078 7548 7511 * 11809 41 3 0 chr9 38381414 38382857 -103888587 - HERV17 LTR ERV1 -2607 6019 4572 2411 203 6 52 chr9 38382857 38383398 -103888046 + HERVH LTR ERV1 1600 2115 -5598 1941 127 3 31 chr9 38383725 38384036 -103887408 + AluSx SINE Alu 1 303 0 2284 99 6 19 chr9 38384094 38384406 -103887038 + AluSq SINE Alu 1 308 -5 318 316 121 22 chr9 38384468 38384699 -103886745 + L3 LINE CR1 1323 1576 -1 401 272 12 75 chr9 38384878 38384950 -103886494 - MLT1K LTR MaLR -3 585 510 2400 74 10 0 chr9 38384950 38385247 -103886197 + AluSp SINE Alu 1 300 -13 401 272 12 75 chr9 38385247 38385347 -103886097 - MLT1K LTR MaLR -78 510 424 2162 100 62 0 chr9 38385348 38385638 -103885806 + AluSx SINE Alu 1 308 -4 549 95 0 0 chr9 38385647 38385731 -103885713 + L1MA3 LINE L1 6222 6305 0 2320 91 10 10 chr9 38385908 38386215 -103885229 + AluSq SINE Alu 1 307 -6 342 0 0 0 chr9 38387698 38387736 -103883708 + (GA)n Simple_repeat Simple_repeat 1 38 0 356 277 141 48 chr9 38387879 38388357 -103883087 + L2 LINE L2 2524 3041 -231 725 230 136 25 chr9 38388391 38388626 -103882818 - MIR SINE MIR 0 262 2 409 121 0 0 chr9 38388778 38388836 -103882608 + AluJ/FLAM SINE Alu 1 58 -244 767 168 105 37 chr9 38391736 38391926 -103879518 + MER97b DNA MER1_type? 1 203 -850 1769 158 13 17 chr9 38391926 38392224 -103879220 - AluJo SINE Alu -15 297 1 383 267 17 9 chr9 38392546 38392662 -103878782 - AluSq/x SINE Alu -185 117 1 330 340 27 0 chr9 38392672 38392822 -103878622 + L1M4 LINE L1 2336 2489 -3657 330 207 60 35 chr9 38392846 38392962 -103878482 + Charlie8 DNA MER1_type 96 214 -2203 1451 103 54 188 chr9 38393088 38393218 -103878226 - MER1B DNA MER1_type -2373 337 191 2006 135 10 22 chr9 38393218 38393529 -103877915 - AluSx SINE Alu -5 307 1 1451 103 54 188 chr9 38393529 38393787 -103877657 - MER1B DNA MER1_type -2519 191 1 1020 148 0 0 chr9 38393878 38394071 -103877373 - AluSg/x SINE Alu 0 326 134 2161 121 3 0 chr9 38394071 38394368 -103877076 - AluSq SINE Alu -6 307 10 242 301 155 39 chr9 38394379 38394585 -103876859 - L2 LINE L2 0 3272 3043 446 237 0 68 chr9 38394763 38394881 -103876563 - L2 LINE L2 -5 3267 3158 2080 133 6 15 chr9 38394895 38395234 -103876210 + MER1B DNA MER1_type 1 336 -1 578 149 79 0 chr9 38395459 38395573 -103875871 + FLAM_A SINE Alu 7 129 -13 391 263 131 0 chr9 38395585 38395745 -103875699 - MIR SINE MIR -38 224 44 1574 106 21 8 chr9 38395929 38396166 -103875278 + AluJb SINE Alu 1 240 -72 244 289 0 72 chr9 38397264 38397361 -103874083 + MIR SINE MIR 121 210 -52 285 230 92 23 chr9 38397410 38397497 -103873947 - MIR SINE MIR -147 115 23 641 311 241 30 chr9 38397642 38398274 -103873170 + L3 LINE CR1 612 1437 -140 2397 98 0 0 chr9 38398274 38398570 -103872874 - AluSx SINE Alu -16 296 1 641 311 241 30 chr9 38398570 38398708 -103872736 + L3 LINE CR1 1437 1545 -32 820 146 0 49 chr9 38400094 38400238 -103871206 - FLAM_C SINE Alu -5 138 2 337 279 109 24 chr9 38402960 38403125 -103868319 - MIR SINE MIR -60 202 24 183 80 0 0 chr9 38403795 38403820 -103867624 + (CAGGG)n Simple_repeat Simple_repeat 1 25 0 346 233 97 34 chr9 38404014 38404190 -103867254 + L1ME4a LINE L1 5760 5946 -175 523 155 0 0 chr9 38404227 38404311 -103867133 + AluJ/FLAM SINE Alu 2 85 -227 23 0 0 0 chr9 38404322 38404345 -103867099 + AT_rich Low_complexity Low_complexity 1 23 0 205 83 0 28 chr9 38404450 38404486 -103866958 + (TAAAAA)n Simple_repeat Simple_repeat 2 36 0 216 274 48 71 chr9 38404533 38404617 -103866827 - L2 LINE L2 -9 3304 3223 268 176 118 35 chr9 38404617 38404702 -103866742 + L1ME4a LINE L1 6030 6121 0 631 64 0 0 chr9 38405545 38405623 -103865821 + AluSp SINE Alu 2 79 -234 1711 74 5 0 chr9 38405661 38405878 -103865566 + AluSp SINE Alu 81 298 -15 624 328 13 69 chr9 38405879 38406358 -103865086 - L2 LINE L2 -25 3247 2796 638 256 72 22 chr9 38406373 38406596 -103864848 - MLT1L LTR MaLR -24 591 358 1026 252 189 36 chr9 38406706 38407257 -103864187 - L2 LINE L2 -492 2822 2188 1627 213 158 20 chr9 38407365 38407807 -103863637 + MLT1D LTR MaLR 3 505 0 1734 140 9 62 chr9 38408607 38408928 -103862516 + AluJo SINE Alu 1 304 -8 197 337 43 22 chr9 38408978 38409070 -103862374 + L2 LINE L2 3199 3292 -21 2411 149 26 96 chr9 38409172 38409198 -103862246 + Charlie1 DNA MER1_type 1583 1609 -1152 2286 80 0 20 chr9 38409198 38409500 -103861944 - AluSg SINE Alu -14 296 1 2411 149 26 96 chr9 38409500 38409970 -103861474 + Charlie1 DNA MER1_type 1609 2026 -735 2123 98 0 17 chr9 38409970 38410293 -103861151 - AluSx SINE Alu 0 312 1 2411 149 26 96 chr9 38410293 38410439 -103861005 + Charlie1 DNA MER1_type 2026 2181 -580 2186 93 0 20 chr9 38410454 38410756 -103860688 - AluSx SINE Alu -14 298 3 1852 150 0 29 chr9 38410763 38411077 -103860367 - AluJb SINE Alu -5 307 3 464 202 0 0 chr9 38411156 38411245 -103860199 + AluS SINE Alu 224 312 0 1461 136 22 0 chr9 38411376 38411604 -103859840 - Tigger3(Golem) DNA MER2_type 0 3029 2797 1536 132 4 43 chr9 38411609 38411889 -103859555 - AluJo SINE Alu -30 282 14 206 299 45 0 chr9 38412197 38412264 -103859180 - L2 LINE L2 -218 3054 2985 1518 74 9 32 chr9 38412277 38412494 -103858950 - AluY SINE Alu -15 296 85 2312 92 0 0 chr9 38412494 38412798 -103858646 - AluSx SINE Alu -7 305 1 317 310 63 25 chr9 38413090 38413248 -103858196 + L2 LINE L2 3141 3304 -9 1502 170 108 0 chr9 38413259 38413536 -103857908 + 7SLRNA srpRNA srpRNA 1 307 -13 204 179 0 0 chr9 38413554 38413568 -103857876 + A-rich Low_complexity Low_complexity 5 18 -25 2122 103 0 3 chr9 38413568 38413860 -103857584 + AluSx SINE Alu 21 311 -1 204 179 0 0 chr9 38413860 38413884 -103857560 + A-rich Low_complexity Low_complexity 17 43 0 207 315 68 62 chr9 38413921 38414067 -103857377 + L2 LINE L2 2625 2771 -543 390 283 14 55 chr9 38414186 38414243 -103857201 + L2 LINE L2 3127 3185 -87 1684 168 0 7 chr9 38414243 38414523 -103856921 - AluJb SINE Alu 0 312 35 390 283 14 55 chr9 38414523 38414610 -103856834 + L2 LINE L2 3185 3265 -7 203 344 6 28 chr9 38416027 38416207 -103855237 + GA-rich Low_complexity Low_complexity 3 178 0 2353 75 0 10 chr9 38416472 38416777 -103854667 - AluSp SINE Alu -11 302 1 245 206 32 16 chr9 38416890 38416953 -103854491 + Charlie8 DNA MER1_type 1360 1423 -994 243 233 117 29 chr9 38418069 38418172 -103853272 - L2 LINE L2 -93 3179 3068 1926 107 33 13 chr9 38418336 38418636 -103852808 - AluSx SINE Alu -6 306 1 2453 52 0 16 chr9 38419549 38419857 -103851587 + AluY SINE Alu 2 304 -7 802 95 0 0 chr9 38420197 38420302 -103851142 - AluSg SINE Alu -179 131 27 288 165 0 35 chr9 38420392 38420477 -103850967 + CT-rich Low_complexity Low_complexity 4 85 0 1388 140 8 47 chr9 38420913 38421170 -103850274 + AluJo SINE Alu 1 247 -65 945 208 0 0 chr9 38421857 38422011 -103849433 - FRAM SINE Alu -12 154 1 34 0 0 0 chr9 38422613 38422647 -103848797 + AT_rich Low_complexity Low_complexity 1 34 0 809 185 129 31 chr9 38422732 38423024 -103848420 - MLT1D LTR MaLR -63 404 1 254 71 0 24 chr9 38423071 38423113 -103848331 + (TG)n Simple_repeat Simple_repeat 2 42 0 262 327 0 10 chr9 38424755 38424859 -103846585 + GA-rich Low_complexity Low_complexity 1 103 0 626 223 102 12 chr9 38425378 38425544 -103845900 + MER5A DNA MER1_type 9 189 0 2205 98 3 0 chr9 38427454 38427751 -103843693 + AluSq SINE Alu 1 298 -15 693 183 48 0 chr9 38428014 38428140 -103843304 + FLAM_A SINE Alu 2 133 0 636 261 31 17 chr9 38428431 38428609 -103842835 + MIR SINE MIR 4 181 -62 294 308 8 42 chr9 38428673 38428793 -103842651 + MER5A DNA MER1_type 68 183 -6 22 35 0 0 chr9 38431517 38431546 -103839898 + GC_rich Low_complexity Low_complexity 1 29 0 231 222 19 56 chr9 38432220 38432328 -103839116 + (CCCCG)n Simple_repeat Simple_repeat 1 104 0 * 232 224 40 0 chr9 38432254 38432330 -103839114 + C-rich Low_complexity Low_complexity 1 79 0 219 247 24 47 chr9 38432599 38432684 -103838760 + G-rich Low_complexity Low_complexity 1 83 0 739 158 0 8 chr9 38433195 38433315 -103838129 - FLAM_A SINE Alu -12 121 3 581 286 66 96 chr9 38433326 38433839 -103837605 + L2 LINE L2 2766 3268 -4 1429 171 35 43 chr9 38433893 38434291 -103837153 - Charlie1 DNA MER1_type -16 2745 2351 2139 96 7 0 chr9 38434292 38434601 -103836843 - AluSx SINE Alu 0 311 1 1211 139 0 0 chr9 38434604 38434791 -103836653 - AluSg/x SINE Alu 0 310 124 2237 100 0 7 chr9 38434791 38435101 -103836343 - AluY SINE Alu -3 308 1 1571 178 0 30 chr9 38435108 38435412 -103836032 - AluJb SINE Alu -17 295 1 2778 150 26 89 chr9 38435412 38435506 -103835938 - Charlie1 DNA MER1_type -480 2281 2183 2202 92 0 20 chr9 38435506 38435810 -103835634 + AluSx SINE Alu 1 298 -14 2778 150 26 89 chr9 38435810 38435971 -103835473 - Charlie1 DNA MER1_type -578 2183 2013 2123 98 0 17 chr9 38435971 38436294 -103835150 + AluSx SINE Alu 1 312 0 2778 150 26 89 chr9 38436294 38436763 -103834681 - Charlie1 DNA MER1_type -748 2013 1602 2277 80 0 20 chr9 38436764 38437065 -103834379 + AluSg SINE Alu 1 295 -15 991 117 34 50 chr9 38437065 38437244 -103834200 - AluSg/x SINE Alu -3 309 134 579 187 19 0 chr9 38437244 38437351 -103834093 - Charlie1 DNA MER1_type -2652 109 1 239 175 159 0 chr9 38437474 38437537 -103833907 + L3 LINE CR1 1432 1504 -73 212 109 130 0 chr9 38437657 38437703 -103833741 + L2 LINE L2 3221 3272 0 836 179 0 0 chr9 38437772 38437917 -103833527 - FRAM SINE Alu -23 153 9 210 322 17 35 chr9 38441158 38441332 -103830112 + GA-rich Low_complexity Low_complexity 5 175 0 582 303 212 0 chr9 38442329 38442669 -103828775 - L2 LINE L2 -5 3308 2897 822 278 63 59 chr9 38442739 38442789 -103828655 - L2 LINE L2 -565 2749 2701 1484 169 26 11 chr9 38442789 38443056 -103828388 - AluJo SINE Alu -39 273 3 822 278 63 59 chr9 38443056 38443494 -103827950 - L2 LINE L2 -613 2701 2259 190 216 0 0 chr9 38443735 38443772 -103827672 - L2 LINE L2 -996 2318 2282 2257 77 0 0 chr9 38443966 38444253 -103827191 - AluSg SINE Alu 0 310 24 247 294 75 27 chr9 38444298 38444444 -103827000 - L2 LINE L2 -1303 2011 1859 1693 118 16 0 chr9 38444509 38444754 -103826690 + AluSx SINE Alu 6 254 -58 270 257 156 0 chr9 38450218 38450327 -103821117 - MER112 DNA MER1_type -131 129 4 1490 70 0 0 chr9 38450597 38450821 -103820623 + AluSc SINE Alu 98 321 0 2600 32 3 0 chr9 38451092 38451402 -103820042 + AluY SINE Alu 1 311 0 2297 73 3 38 chr9 38451416 38451733 -103819711 + AluY SINE Alu 1 306 -5 2140 94 0 19 chr9 38453849 38454156 -103817288 + AluSc SINE Alu 1 301 -8 309 298 122 16 chr9 38454868 38454887 -103816557 + HAL1 LINE L1 1069 1085 -1422 2101 125 7 0 chr9 38454887 38455191 -103816253 + AluSx SINE Alu 1 306 -6 309 298 122 16 chr9 38455191 38455359 -103816085 + HAL1 LINE L1 1085 1276 -1231 1692 95 70 11 chr9 38457281 38457554 -103813890 + L1MA5A LINE L1 6008 6296 -1 953 143 0 0 chr9 38457559 38457692 -103813752 + FLAM_C SINE Alu 1 133 0 199 289 44 22 chr9 38458425 38458515 -103812929 - MIR SINE MIR -98 164 73 731 134 18 0 chr9 38462105 38462217 -103809227 - AluSg/x SINE Alu -4 306 193 186 316 125 33 chr9 38464049 38464201 -103807243 - MIR SINE MIR -62 200 35 2293 80 3 7 chr9 38464587 38464888 -103806556 - AluSp SINE Alu -13 300 1 457 248 56 8 chr9 38465878 38466003 -103805441 + L2 LINE L2 3159 3289 -24 2246 76 14 0 chr9 38467405 38467693 -103803751 - AluY SINE Alu -19 292 1 185 311 95 14 chr9 38467983 38468057 -103803387 + MIR3 SINE MIR 97 176 -32 215 364 62 49 chr9 38470240 38470465 -103800979 - L2 LINE L2 -1 3271 3044 479 252 193 18 chr9 38470535 38470753 -103800691 - MIR SINE MIR 0 262 7 256 329 75 30 chr9 38470783 38471078 -103800366 - L2 LINE L2 -347 2967 2660 211 154 111 51 chr9 38473490 38473607 -103797837 + (CCCGG)n Simple_repeat Simple_repeat 4 127 0 583 316 178 46 chr9 38475031 38475135 -103796309 + L3 LINE CR1 634 723 -854 566 220 113 6 chr9 38475135 38475294 -103796150 - MER69A DNA AcHobo 0 177 2 583 316 178 46 chr9 38475294 38475473 -103795971 + L3 LINE CR1 723 877 -700 1540 137 16 23 chr9 38475473 38475729 -103795715 - AluJb SINE Alu -24 288 35 583 316 178 46 chr9 38475729 38476079 -103795365 + L3 LINE CR1 877 1179 -398 1756 179 3 0 chr9 38476079 38476375 -103795069 - AluJb SINE Alu -12 300 4 583 316 178 46 chr9 38476375 38476573 -103794871 + L3 LINE CR1 1179 1577 0 210 44 44 22 chr9 38477312 38477357 -103794087 + (TTTTTG)n Simple_repeat Simple_repeat 3 48 0 231 269 30 15 chr9 38479005 38479072 -103792372 - L2 LINE L2 -82 3190 3123 1876 68 4 20 chr9 38482827 38483077 -103788367 - AluY SINE Alu -60 251 6 349 334 133 34 chr9 38483520 38484120 -103787324 + L2 LINE L2 2542 3207 -65 1442 176 149 7 chr9 38484352 38484653 -103786791 - MER2 DNA MER2_type 0 344 1 879 245 30 9 chr9 38484686 38484919 -103786525 + MIR SINE MIR 10 247 -15 223 289 84 12 chr9 38485598 38485681 -103785763 + L2 LINE L2 3180 3268 -4 2193 101 0 9 chr9 38486593 38486909 -103784535 - AluSq SINE Alu 0 313 1 23 0 0 0 chr9 38487030 38487053 -103784391 + AT_rich Low_complexity Low_complexity 1 23 0 311 258 83 30 chr9 38487351 38487483 -103783961 + MIR SINE MIR 70 208 -54 2198 103 7 7 chr9 38487791 38488101 -103783343 + AluSq SINE Alu 1 310 -3 238 250 0 0 chr9 38488305 38488353 -103783091 + L2 LINE L2 3265 3312 -1 216 0 0 0 chr9 38490796 38490820 -103780624 + (CCG)n Simple_repeat Simple_repeat 3 26 0 815 243 80 0 chr9 38496576 38496802 -103774642 + MIR SINE MIR 18 261 -1 2296 111 3 46 chr9 38496947 38497298 -103774146 - MER1B DNA MER1_type 0 337 2 27 0 0 0 chr9 38499390 38499417 -103772027 + AT_rich Low_complexity Low_complexity 1 27 0 195 42 0 0 chr9 38500061 38500085 -103771359 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 2051 127 10 16 chr9 38500767 38501081 -103770363 + AluSx SINE Alu 1 312 0 201 268 0 0 chr9 38501383 38501439 -103770005 + T-rich Low_complexity Low_complexity 1 56 0 870 174 139 0 chr9 38501784 38501956 -103769488 - MER20 DNA MER1_type -1 218 23 459 279 78 0 chr9 38502062 38502191 -103769253 + MER5A DNA MER1_type 7 145 -44 1723 163 3 23 chr9 38502874 38503204 -103768240 + AluJb SINE Alu 1 312 0 1468 106 62 13 chr9 38503356 38503582 -103767862 + AluSx SINE Alu 1 237 -75 559 303 86 31 chr9 38503679 38503969 -103767475 + L3 LINE CR1 1214 1519 -58 440 341 29 0 chr9 38504388 38504526 -103766918 - MIR3 SINE MIR -64 144 3 2306 112 0 0 chr9 38505084 38505396 -103766048 + AluSx SINE Alu 1 312 0 800 177 7 0 chr9 38505491 38505632 -103765812 + AluJb SINE Alu 171 312 0 3107 186 24 89 chr9 38505981 38506328 -103765116 - L1ME2 LINE L1 0 6164 5796 1943 134 10 0 chr9 38506328 38506626 -103764818 + AluSx SINE Alu 1 301 -11 3107 186 24 89 chr9 38506626 38506864 -103764580 - L1ME2 LINE L1 -368 5796 5544 1889 157 0 0 chr9 38506864 38507157 -103764287 + AluJb SINE Alu 6 298 -14 3107 186 24 89 chr9 38507157 38507310 -103764134 - L1ME2 LINE L1 -620 5544 5383 2216 92 16 0 chr9 38507310 38507614 -103763830 - AluY SINE Alu -2 309 1 3107 186 24 89 chr9 38507614 38508144 -103763300 - L1ME2 LINE L1 -781 5383 4990 406 257 114 0 chr9 38508320 38508425 -103763019 - L2 LINE L2 -15 3298 3182 189 0 0 0 chr9 38508769 38508790 -103762654 + (T)n Simple_repeat Simple_repeat 1 21 0 300 297 40 30 chr9 38509144 38509245 -103762199 - MER117 DNA MER1_type -8 189 88 1846 116 11 4 chr9 38509318 38509586 -103761858 - AluSx SINE Alu -42 270 1 1443 136 163 0 chr9 38509589 38509847 -103761597 - AluJb SINE Alu -12 300 1 537 287 187 43 chr9 38510869 38511358 -103760086 - L2 LINE L2 -2 3270 2721 22 35 0 0 chr9 38511372 38511401 -103760043 + AT_rich Low_complexity Low_complexity 1 29 0 1072 317 103 11 chr9 38511503 38511978 -103759466 - L2 LINE L2 -621 2693 2146 423 0 0 0 chr9 38511978 38512025 -103759419 + (GA)n Simple_repeat Simple_repeat 1 47 0 1072 317 103 11 chr9 38512025 38512168 -103759276 - L2 LINE L2 -1168 2146 2018 398 309 65 57 chr9 38513646 38513982 -103757462 - L2 LINE L2 -1082 2232 1894 2424 47 7 0 chr9 38513997 38514295 -103757149 + AluY SINE Alu 1 300 -11 185 54 0 81 chr9 38514310 38514347 -103757097 - L2 LINE L2 -8 3305 3272 1842 147 10 16 chr9 38514592 38514906 -103756538 + AluJb SINE Alu 1 312 0 2176 109 3 0 chr9 38514984 38515287 -103756157 - AluSx SINE Alu -8 304 1 43 0 0 0 chr9 38515296 38515339 -103756105 + AT_rich Low_complexity Low_complexity 1 43 0 790 132 18 0 chr9 38515339 38515453 -103755991 - FLAM_C SINE Alu -26 117 2 2384 50 10 0 chr9 38515931 38516229 -103755215 + AluY SINE Alu 1 301 -10 848 229 197 31 chr9 38516670 38517055 -103754389 - LTR33A LTR ERVL -8 515 67 1895 149 3 3 chr9 38517770 38518072 -103753372 - AluSx SINE Alu -10 302 1 2272 84 0 0 chr9 38518199 38518496 -103752948 + AluY SINE Alu 1 297 -14 2377 81 0 0 chr9 38518607 38518914 -103752530 - AluY SINE Alu -4 307 1 23 0 0 0 chr9 38518960 38518983 -103752461 + AT_rich Low_complexity Low_complexity 1 23 0 779 155 9 0 chr9 38518988 38519104 -103752340 - FLAM_C SINE Alu -16 117 1 2235 82 0 7 chr9 38519503 38519795 -103751649 + AluSp SINE Alu 1 290 -23 1390 162 43 32 chr9 38521235 38521513 -103749931 - AluJo SINE Alu -21 291 11 1693 146 25 4 chr9 38522074 38522203 -103749241 + AluJb SINE Alu 1 126 -186 221 0 35 0 chr9 38522203 38522232 -103749212 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1693 146 25 4 chr9 38522232 38522382 -103749062 + AluJb SINE Alu 126 286 -26 237 226 18 9 chr9 38522860 38522929 -103748515 + G-rich Low_complexity Low_complexity 1 69 0 473 240 24 32 chr9 38522931 38523056 -103748388 + MER20B DNA MER1_type 57 180 -603 25 0 0 0 chr9 38523213 38523238 -103748206 + AT_rich Low_complexity Low_complexity 1 25 0 275 279 29 0 chr9 38523362 38523466 -103747978 + MER20B DNA MER1_type 519 625 -158 1207 101 0 0 chr9 38523469 38523638 -103747806 - AluSg/x SINE Alu -9 301 133 607 232 18 0 chr9 38523638 38523802 -103747642 + MER20B DNA MER1_type 617 783 0 2231 98 3 0 chr9 38523925 38524231 -103747213 - AluSx SINE Alu -5 307 1 2251 91 0 0 chr9 38524296 38524594 -103746850 - AluSp SINE Alu -15 298 1 5956 117 83 16 chr9 38524684 38525935 -103745509 - L1MA6 LINE L1 0 6300 4958 1979 92 6 63 chr9 38525936 38526253 -103745191 - AluSq SINE Alu -14 299 1 617 219 0 0 chr9 38526279 38526393 -103745051 - FLAM_A SINE Alu -19 114 1 1390 224 82 24 chr9 38526395 38526775 -103744669 - Charlie2 DNA MER1_type -2417 445 44 318 289 52 59 chr9 38527001 38527136 -103744308 - L2 LINE L2 -558 2756 2623 292 272 44 0 chr9 38527174 38527288 -103744156 + MER102a DNA MER1_type 212 330 0 252 347 72 0 chr9 38527311 38527478 -103743966 + L2 LINE L2 2491 2669 -645 2189 78 0 17 chr9 38528299 38528595 -103742849 + AluY SINE Alu 1 291 -20 1498 93 9 22 chr9 38528595 38528821 -103742623 - AluY SINE Alu -20 291 69 2073 117 0 0 chr9 38528958 38529249 -103742195 - AluSx SINE Alu -21 291 1 329 280 168 8 chr9 38529444 38529569 -103741875 - L1M4c LINE L1 -4043 2341 2197 2272 97 10 0 chr9 38530006 38530315 -103741129 + AluSx SINE Alu 1 312 0 1881 133 37 0 chr9 38530738 38531038 -103740406 - AluSx SINE Alu -1 311 1 724 156 23 0 chr9 38531046 38531174 -103740270 - FLAM_A SINE Alu -2 140 10 391 269 16 113 chr9 38531532 38531718 -103739726 + MIR3 SINE MIR 34 201 -7 182 372 85 0 chr9 38532043 38532137 -103739307 + L2 LINE L2 3195 3296 -17 206 282 0 51 chr9 38533871 38533988 -103737456 + C-rich Low_complexity Low_complexity 2 112 0 192 192 135 0 chr9 38535754 38535806 -103735638 - L2 LINE L2 -259 3054 2996 198 0 0 0 chr9 38536502 38536524 -103734920 + (TG)n Simple_repeat Simple_repeat 1 22 0 434 328 79 4 chr9 38536701 38536954 -103734490 + L2 LINE L2 2706 2977 -337 192 197 49 49 chr9 38537083 38537144 -103734300 + L3 LINE CR1 1513 1573 -4 622 272 37 52 chr9 38537545 38537817 -103733627 - L2 LINE L2 -4 3309 3042 1803 134 28 11 chr9 38537864 38538147 -103733297 - AluJb SINE Alu -19 293 6 264 333 167 16 chr9 38538714 38538840 -103732604 + L2 LINE L2 3124 3268 -4 200 108 0 27 chr9 38539396 38539433 -103732011 + (TTTTTG)n Simple_repeat Simple_repeat 2 37 0 814 207 34 0 chr9 38539486 38539665 -103731779 + Charlie1 DNA MER1_type 52 236 -2525 790 145 7 0 chr9 38539653 38539791 -103731653 + Charlie1 DNA MER1_type 2622 2760 -1 * 350 42 21 0 chr9 38541080 38541128 -103730316 + (CA)n Simple_repeat Simple_repeat 2 50 0 2631 3 0 3 chr9 38544776 38545071 -103726373 - AluYa5 SINE Alu -17 294 1 1824 157 3 0 chr9 38545901 38546200 -103725244 - AluJb SINE Alu -12 300 1 486 256 43 8 chr9 38549480 38549597 -103721847 + MIR SINE MIR 31 151 -111 371 152 0 51 chr9 38549692 38549771 -103721673 - L1MC4 LINE L1 -193 7849 7775 221 283 0 0 chr9 38549933 38549979 -103721465 - L2 LINE L2 -1 3312 3267 340 341 0 0 chr9 38553140 38553310 -103718134 + (CAGAGA)n Simple_repeat Simple_repeat 2 171 0 235 214 0 0 chr9 38553525 38553581 -103717863 + (CTG)n Simple_repeat Simple_repeat 3 58 0 187 369 138 0 chr9 38555706 38555836 -103715608 + MIR3 SINE MIR 20 167 -41 2549 36 0 0 chr9 38557613 38557914 -103713530 - AluY SINE Alu 0 311 11 210 71 0 0 chr9 38558049 38558077 -103713367 + (T)n Simple_repeat Simple_repeat 1 28 0 185 204 102 0 chr9 38558078 38558127 -103713317 + L2 LINE L2 3217 3270 -2 207 323 45 30 chr9 38558341 38558474 -103712970 - L3 LINE CR1 -122 1455 1321 280 310 43 11 chr9 38558692 38558835 -103712609 - MIR SINE MIR -50 212 63 632 347 138 27 chr9 38559285 38559953 -103711491 + L2 LINE L2 1298 2039 -1275 1992 94 3 46 chr9 38561165 38561472 -103709972 - AluY SINE Alu -17 294 1 415 324 73 48 chr9 38562673 38562945 -103708499 + L2 LINE L2 2993 3271 -1 704 315 24 98 chr9 38563734 38564068 -103707376 + L2 LINE L2 2242 2504 -810 2130 105 13 3 chr9 38564068 38564374 -103707070 - AluSx SINE Alu -3 309 1 704 315 24 98 chr9 38564374 38564702 -103706742 + L2 LINE L2 2504 2855 -459 356 301 67 112 chr9 38564770 38565082 -103706362 + L2 LINE L2 2974 3271 -1 1415 179 43 14 chr9 38565347 38565627 -103705817 - AluJb SINE Alu -19 293 6 2569 51 0 0 chr9 38566337 38566648 -103704796 - AluY SINE Alu 0 311 1 449 251 53 59 chr9 38568336 38568472 -103702972 + L2 LINE L2 2174 2310 -1004 2247 103 0 0 chr9 38568472 38568774 -103702670 - AluSx SINE Alu -10 302 1 449 251 53 59 chr9 38568774 38568824 -103702620 + L2 LINE L2 2310 2359 -955 2124 113 3 0 chr9 38569678 38569989 -103701455 + AluSx SINE Alu 1 312 0 450 0 0 0 chr9 38570000 38570050 -103701394 + (CTA)n Simple_repeat Simple_repeat 3 52 0 25 0 0 0 chr9 38570992 38571017 -103700427 + GC_rich Low_complexity Low_complexity 1 25 0 506 328 0 0 chr9 38571098 38571343 -103700101 + C-rich Low_complexity Low_complexity 1 245 0 498 237 17 17 chr9 38572202 38572320 -103699124 - MIR SINE MIR -66 142 25 714 238 19 48 chr9 38573172 38573378 -103698066 - ERVL LTR ERVL -1472 4292 4093 390 121 0 0 chr9 38573822 38573888 -103697556 + (TG)n Simple_repeat Simple_repeat 1 66 0 360 0 0 0 chr9 38575702 38575742 -103695702 + (CA)n Simple_repeat Simple_repeat 2 41 0 239 114 0 0 chr9 38575876 38575911 -103695533 + MIR SINE MIR 113 147 -61 210 37 0 0 chr9 38575913 38575940 -103695504 + (TTTTTG)n Simple_repeat Simple_repeat 4 30 0 246 276 0 0 chr9 38578921 38578979 -103692465 - L2 LINE L2 -27 3245 3188 200 281 297 10 chr9 38579086 38579295 -103692149 - L2 LINE L2 -285 2987 2721 260 232 18 0 chr9 38579348 38579404 -103692040 + L2 LINE L2 3179 3235 -37 1141 290 62 70 chr9 38579986 38580685 -103690759 + L2 LINE L2 1981 2673 -641 309 237 144 0 chr9 38581518 38581615 -103689829 - L2 LINE L2 -3 3310 3200 232 314 100 22 chr9 38581786 38582015 -103689429 + L3 LINE CR1 1101 1347 -230 244 273 99 58 chr9 38582068 38582189 -103689255 - L2 LINE L2 0 3313 3188 457 333 20 0 chr9 38584664 38584817 -103686627 - L3 LINE CR1 -99 1478 1323 534 142 194 15 chr9 38584881 38585015 -103686429 - L1MC2 LINE L1 0 6344 6187 460 264 0 0 chr9 38585205 38585315 -103686129 - L3 LINE CR1 -568 1009 900 1979 127 0 3 chr9 38585442 38585734 -103685710 - AluSx SINE Alu -21 291 1 257 344 47 3 chr9 38585835 38586060 -103685384 - L3 LINE CR1 -708 869 578 214 280 0 27 chr9 38587738 38587813 -103683631 + G-rich Low_complexity Low_complexity 5 77 0 2351 93 0 0 chr9 38590333 38590643 -103680801 - AluSg SINE Alu 0 310 1 191 277 169 81 chr9 38591134 38591282 -103680162 - MIR SINE MIR -70 192 32 1600 125 21 113 chr9 38592780 38593116 -103678328 - AluJb SINE Alu -7 305 1 213 94 0 0 chr9 38596324 38596356 -103675088 + (TG)n Simple_repeat Simple_repeat 2 33 0 2343 78 0 0 chr9 38597068 38597364 -103674080 - AluSp SINE Alu -17 296 1 305 335 142 14 chr9 38597976 38598547 -103672897 - L2 LINE L2 -352 2962 2319 1014 253 237 27 chr9 38599329 38599763 -103671681 - MLT2F LTR ERVL 0 663 115 1972 114 50 3 chr9 38599763 38600061 -103671383 - AluSx SINE Alu 0 312 1 1014 253 237 27 chr9 38600061 38600112 -103671332 - MLT2F LTR ERVL -548 115 76 1469 242 36 62 chr9 38600276 38600694 -103670750 + MLT1I LTR MaLR 1 407 -2 372 268 16 24 chr9 38601719 38601846 -103669598 + MIR3 SINE MIR 71 196 -12 376 239 54 43 chr9 38602049 38602141 -103669303 - L2 LINE L2 0 3313 3221 303 251 53 99 chr9 38603216 38603387 -103668057 + MIR SINE MIR 8 170 -92 657 184 53 0 chr9 38603766 38603880 -103667564 - L2 LINE L2 0 3313 3194 251 291 133 88 chr9 38604203 38604601 -103666843 + L2 LINE L2 2805 3220 -52 1019 180 0 0 chr9 38604682 38604843 -103666601 + FRAM SINE Alu 5 165 -11 476 304 128 16 chr9 38605214 38605471 -103665973 - MLT1I LTR MaLR -7 402 117 181 306 63 27 chr9 38605715 38605826 -103665618 + MIR3 SINE MIR 4 118 -90 530 280 142 35 chr9 38606106 38606338 -103665106 + MIR SINE MIR 4 260 -2 706 142 16 8 chr9 38607500 38607627 -103663817 + Tigger2 DNA MER2_type 1 128 -2590 * 1592 129 172 19 chr9 38607623 38607948 -103663496 + Tigger2 DNA MER2_type 2344 2718 0 1287 275 35 49 chr9 38608165 38608470 -103662974 - L1ME4a LINE L1 -1 6120 5812 2079 145 14 0 chr9 38608470 38608767 -103662677 + AluJo SINE Alu 1 301 -11 1287 275 35 49 chr9 38608767 38609111 -103662333 - L1ME4a LINE L1 -309 5812 5480 204 40 0 0 chr9 38609693 38609718 -103661726 + (CTG)n Simple_repeat Simple_repeat 1 25 0 2791 84 82 10 chr9 38609817 38610231 -103661213 + MLT2A1 LTR ERVL 1 444 0 308 320 78 47 chr9 38610614 38610973 -103660471 - L2 LINE L2 -360 2954 2585 398 208 48 28 chr9 38612162 38612282 -103659162 + MIR3 SINE MIR 36 160 -48 430 243 62 14 chr9 38612331 38612475 -103658969 + MER103 DNA DNA 13 163 -3 599 184 293 7 chr9 38612553 38612700 -103658744 - MER5A DNA MER1_type 0 189 1 240 217 0 0 chr9 38612747 38612793 -103658651 + L2 LINE L2 2924 2969 -303 235 287 217 57 chr9 38613069 38613226 -103658218 - MIR3 SINE MIR -3 205 24 322 245 11 69 chr9 38613710 38613898 -103657546 + C-rich Low_complexity Low_complexity 4 180 0 1057 234 66 18 chr9 38614046 38614380 -103657064 - L1ME1 LINE L1 -5 6161 5812 298 105 0 151 chr9 38614376 38614462 -103656982 - L1MB7 LINE L1 0 6184 6112 * 252 96 135 0 chr9 38614451 38614503 -103656941 + L1MB8 LINE L1 6079 6137 -41 * 3807 153 35 50 chr9 38614522 38615177 -103656267 - L1MB8 LINE L1 -50 6128 5486 2197 119 0 3 chr9 38615177 38615470 -103655974 + AluJb SINE Alu 1 292 -20 3807 153 35 50 chr9 38615470 38615609 -103655835 - L1MB8 LINE L1 -692 5486 5346 2004 172 0 7 chr9 38615629 38615937 -103655507 - AluSx SINE Alu -6 306 1 22 0 0 0 chr9 38616431 38616453 -103654991 + AT_rich Low_complexity Low_complexity 1 22 0 332 204 23 28 chr9 38616887 38616987 -103654457 - L1MB8 LINE L1 -1651 4495 4397 422 316 23 12 chr9 38616998 38617169 -103654275 - L1MEc LINE L1 -4548 1848 1676 1366 107 5 10 chr9 38667177 38667382 -103604062 - AluSq SINE Alu -109 204 1 2114 110 3 0 chr9 38667560 38667860 -103603584 + AluSx SINE Alu 1 301 -11 1107 125 0 0 chr9 38667860 38668046 -103603398 + AluSg/x SINE Alu 132 310 0 1649 156 17 34 chr9 38668049 38668344 -103603100 + AluJo SINE Alu 1 290 -22 2320 68 0 0 chr9 38668474 38668766 -103602678 + AluSq SINE Alu 1 292 -21 1623 115 15 15 chr9 38669015 38669275 -103602169 - AluSx SINE Alu -15 297 38 365 90 0 75 chr9 38669394 38669461 -103601983 + Alu SINE Alu 241 302 0 231 174 72 0 chr9 38669601 38669670 -103601774 + (TAGA)n Simple_repeat Simple_repeat 2 75 0 2113 102 7 7 chr9 38669726 38670029 -103601415 - AluSx SINE Alu -9 303 1 2272 94 13 0 chr9 38670041 38670348 -103601096 - AluSx SINE Alu 0 312 2 531 209 152 25 chr9 38670552 38670710 -103600734 - MIR SINE MIR 0 262 85 1511 93 15 0 chr9 38670729 38670933 -103600511 + AluSq SINE Alu 1 207 -106 2757 16 0 0 chr9 38671326 38671637 -103599807 + AluY SINE Alu 1 311 0 598 178 0 25 chr9 38672897 38673015 -103598429 - FLAM_A SINE Alu -19 123 9 433 169 0 0 chr9 38673063 38673134 -103598310 + AluJ/FLAM SINE Alu 29 99 -213 516 301 34 70 chr9 38673410 38673455 -103597989 - L2 LINE L2 -554 2760 2715 2213 116 0 3 chr9 38673455 38673766 -103597678 - AluSx SINE Alu -2 310 1 516 301 34 70 chr9 38673766 38673939 -103597505 - L2 LINE L2 -599 2715 2537 900 186 6 12 chr9 38673939 38674106 -103597338 + FRAM SINE Alu 1 166 0 516 301 34 70 chr9 38674106 38674302 -103597142 - L2 LINE L2 -777 2537 2271 2013 166 100 66 chr9 38674326 38674392 -103597052 - MLT1D LTR MaLR 0 505 443 2637 39 0 0 chr9 38674392 38674703 -103596741 + AluY SINE Alu 1 311 0 2013 166 100 66 chr9 38674703 38675081 -103596363 - MLT1D LTR MaLR -62 443 40 2125 85 14 0 chr9 38675081 38675374 -103596070 + AluSg SINE Alu 1 297 -13 2013 166 100 66 chr9 38675374 38675416 -103596028 - MLT1D LTR MaLR -465 40 1 2300 62 0 10 chr9 38675443 38675747 -103595697 + AluY SINE Alu 1 301 -10 347 245 64 0 chr9 38675873 38675967 -103595477 + L1ME3A LINE L1 6058 6157 -13 340 324 9 19 chr9 38676502 38676610 -103594834 - L3 LINE CR1 -31 1546 1440 425 274 156 3 chr9 38676719 38676883 -103594561 - MIR SINE MIR -42 220 34 655 330 28 32 chr9 38676927 38676981 -103594463 - L3 LINE CR1 -957 620 567 2036 104 28 0 chr9 38676981 38677269 -103594175 - AluSx SINE Alu -16 296 1 655 330 28 32 chr9 38677269 38677496 -103593948 - L3 LINE CR1 -1010 567 340 1835 154 3 10 chr9 38677928 38678239 -103593205 - AluSx SINE Alu -3 309 1 433 223 66 66 chr9 38678338 38678428 -103593016 + MER117 DNA MER1_type 32 124 -73 5927 62 31 17 chr9 38678428 38679197 -103592247 + LTR17 LTR ERV1 1 780 0 433 223 66 66 chr9 38679197 38679272 -103592172 + MER117 DNA MER1_type 123 197 0 2010 161 0 56 chr9 38679442 38679727 -103591717 - MER1B DNA MER1_type -2373 337 74 2136 91 23 26 chr9 38679727 38680035 -103591409 - AluSx SINE Alu -5 307 1 2010 161 0 56 chr9 38680035 38680104 -103591340 - MER1B DNA MER1_type -2636 74 3 2020 100 7 14 chr9 38680296 38680432 -103591012 + AluSx SINE Alu 1 136 -176 2314 48 34 0 chr9 38680432 38680723 -103590721 + AluY SINE Alu 1 301 -10 2020 100 7 14 chr9 38680723 38680877 -103590567 + AluSx SINE Alu 136 289 -23 2006 106 4 0 chr9 38681219 38681493 -103589951 + AluSx SINE Alu 1 275 -37 216 0 0 0 chr9 38681497 38681521 -103589923 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 581 45 0 0 chr9 38681587 38681654 -103589790 + U4 snRNA snRNA 1 67 -78 1666 146 53 14 chr9 38681672 38681953 -103589491 + AluJb SINE Alu 1 292 -20 1693 168 0 10 chr9 38682188 38682486 -103588958 + AluJb SINE Alu 1 295 -17 2241 104 0 0 chr9 38682652 38682950 -103588494 + AluSx SINE Alu 1 298 -14 350 352 151 21 chr9 38683053 38683437 -103588007 + L2 LINE L2 2089 2522 -792 2460 77 0 0 chr9 38683454 38683766 -103587678 - AluSx SINE Alu 0 312 1 1527 196 0 3 chr9 38683776 38684067 -103587377 - AluJo SINE Alu -22 290 1 669 158 0 110 chr9 38684251 38684313 -103587131 + FLAM_A SINE Alu 2 41 -261 2484 55 0 0 chr9 38684313 38684621 -103586823 - AluY SINE Alu -3 308 1 669 158 0 110 chr9 38684621 38684704 -103586740 + FLAM_A SINE Alu 41 131 -171 2255 93 0 0 chr9 38685176 38685478 -103585966 - AluSx SINE Alu -10 302 1 219 345 122 31 chr9 38685974 38686144 -103585300 - L2 LINE L2 -452 2862 2709 2488 62 0 0 chr9 38686144 38686453 -103584991 + AluY SINE Alu 1 309 -2 219 345 122 31 chr9 38686453 38686593 -103584851 - L2 LINE L2 -605 2709 2514 1558 110 8 61 chr9 38686593 38686857 -103584587 + AluSx SINE Alu 1 250 -62 219 345 122 31 chr9 38686857 38686899 -103584545 - L2 LINE L2 -800 2514 2477 180 266 11 117 chr9 38686907 38687001 -103584443 - L2 LINE L2 -957 2357 2274 2205 98 3 0 chr9 38687026 38687321 -103584123 - AluSx SINE Alu -16 296 1 1800 113 77 0 chr9 38687465 38687739 -103583705 - AluSg SINE Alu -15 295 1 432 0 0 0 chr9 38687873 38687921 -103583523 + (TG)n Simple_repeat Simple_repeat 1 48 0 1650 179 0 0 chr9 38687921 38688200 -103583244 - AluJo SINE Alu -33 279 1 627 285 162 58 chr9 38688316 38688522 -103582922 + L2 LINE L2 1968 2151 -1163 2395 56 0 7 chr9 38688522 38688828 -103582616 - AluY SINE Alu -7 304 1 627 285 162 58 chr9 38688828 38689134 -103582310 + L2 LINE L2 2151 2533 -781 25 0 0 0 chr9 38689561 38689586 -103581858 + AT_rich Low_complexity Low_complexity 1 25 0 1699 174 0 3 chr9 38689694 38689976 -103581468 + AluJo SINE Alu 1 281 -31 372 77 0 0 chr9 38691139 38691191 -103580253 + (T)n Simple_repeat Simple_repeat 1 52 0 809 134 0 24 chr9 38691470 38691597 -103579847 - FLAM_C SINE Alu -13 130 7 2146 110 0 7 chr9 38691622 38691931 -103579513 - AluSx SINE Alu -5 307 1 633 164 77 0 chr9 38692202 38692306 -103579138 - FLAM_A SINE Alu -20 122 11 1500 176 13 36 chr9 38692393 38692700 -103578744 + AluJo SINE Alu 3 302 -10 2180 113 3 0 chr9 38692883 38693194 -103578250 - AluSx SINE Alu 0 312 1 1675 156 46 0 chr9 38693196 38693479 -103577965 - AluSx SINE Alu -16 296 1 2059 115 0 10 chr9 38693588 38693883 -103577561 - AluSx SINE Alu -18 294 3 26 50 0 0 chr9 38693887 38693927 -103577517 + AT_rich Low_complexity Low_complexity 1 40 0 802 162 0 0 chr9 38693928 38694045 -103577399 - FLAM_C SINE Alu -16 117 1 863 236 77 5 chr9 38694554 38694762 -103576682 - MER58A DNA MER1_type -1 223 1 489 268 32 79 chr9 38694763 38694953 -103576491 - MIR SINE MIR -81 181 1 244 314 109 0 chr9 38694998 38695154 -103576290 + L1ME4a LINE L1 5738 5910 -211 245 234 62 76 chr9 38695176 38695286 -103576158 + L1ME4a LINE L1 5962 6071 -50 2222 93 0 7 chr9 38695286 38695588 -103575856 - AluSc SINE Alu -9 300 1 245 234 62 76 chr9 38695588 38695622 -103575822 + L1ME4a LINE L1 6071 6104 -17 1850 191 103 2 chr9 38696256 38696655 -103574789 - REP3 LTR ERV 0 562 124 954 202 34 0 chr9 38696654 38696832 -103574612 - MER82 DNA MER2_type -462 191 8 * 230 170 9 189 chr9 38696839 38696945 -103574499 - Charlie1 DNA MER1_type -2669 92 6 212 309 27 82 chr9 38696954 38697064 -103574380 + L2 LINE L2 3151 3254 -18 2254 50 11 0 chr9 38697150 38697457 -103573987 - AluY SINE Alu 0 310 1 1826 150 7 7 chr9 38697458 38697764 -103573680 - AluJb SINE Alu -5 307 2 2030 104 4 0 chr9 38697778 38698096 -103573348 - AluSq SINE Alu 0 322 4 318 51 0 0 chr9 38698121 38698160 -103573284 + tRNA-Thr-ACA tRNA tRNA 1 39 -37 * 14774 119 13 18 chr9 38698157 38698905 -103572539 - Tigger1 DNA MER2_type -188 2230 1480 2305 91 0 3 chr9 38698905 38699214 -103572230 - AluSc SINE Alu -1 308 1 14774 119 13 18 chr9 38699214 38699526 -103571918 - Tigger1 DNA MER2_type -938 1480 1168 2140 107 0 35 chr9 38699526 38699844 -103571600 - AluSx SINE Alu -5 307 1 14774 119 13 18 chr9 38699844 38700809 -103570635 - Tigger1 DNA MER2_type -1250 1168 214 1490 149 67 8 chr9 38700809 38701064 -103570380 + AluJb SINE Alu 17 286 -26 14774 119 13 18 chr9 38701064 38701277 -103570167 - Tigger1 DNA MER2_type -2204 214 1 2233 116 0 0 chr9 38701581 38701891 -103569553 - AluSx SINE Alu 0 312 3 224 273 216 0 chr9 38702124 38702212 -103569232 + L2 LINE L2 3153 3259 -13 1052 166 73 214 chr9 38702568 38702964 -103568480 - MLT1C LTR MaLR -1 466 202 2300 83 0 7 chr9 38702964 38703266 -103568178 - AluSq SINE Alu -13 300 1 1052 166 73 214 chr9 38703266 38703406 -103568038 - MLT1C LTR MaLR -265 202 44 1503 189 92 87 chr9 38703408 38703820 -103567624 + MLT2D LTR ERVL 1 414 0 305 136 0 0 chr9 38703825 38703869 -103567575 - MLT2D LTR ERVL -217 197 154 409 141 109 70 chr9 38703947 38704018 -103567426 - MER5A DNA MER1_type -77 112 33 560 200 86 0 chr9 38704018 38704123 -103567321 - MER81 DNA DNA 0 114 1 409 141 109 70 chr9 38704123 38704155 -103567289 - MER5A DNA MER1_type -156 33 4 311 261 80 0 chr9 38704538 38704626 -103566818 + MIR SINE MIR 20 114 -148 622 194 28 0 chr9 38704868 38705119 -103566325 + CT-rich Low_complexity Low_complexity 1 258 0 607 207 0 0 chr9 38705126 38705237 -103566207 - AluJb SINE Alu 0 312 202 2182 118 0 0 chr9 38705402 38705689 -103565755 + AluSx SINE Alu 1 287 -25 246 62 0 0 chr9 38706096 38706128 -103565316 + (TG)n Simple_repeat Simple_repeat 2 33 0 229 374 60 12 chr9 38707115 38707281 -103564163 + L3 LINE CR1 334 507 -1070 1597 149 138 0 chr9 38707540 38707809 -103563635 + AluJb SINE Alu 1 306 -6 2349 111 0 0 chr9 38708435 38708733 -103562711 + AluSq SINE Alu 1 298 -15 2138 125 0 25 chr9 38708744 38709064 -103562380 + AluSx SINE Alu 1 312 0 1817 156 41 3 chr9 38709083 38709378 -103562066 + AluJb SINE Alu 1 306 -6 28 0 0 0 chr9 38709443 38709471 -103561973 + AT_rich Low_complexity Low_complexity 1 28 0 1847 174 7 3 chr9 38709586 38709880 -103561564 + AluJb SINE Alu 1 295 -17 2157 136 0 0 chr9 38709912 38710214 -103561230 - AluSx SINE Alu -10 302 1 614 170 0 0 chr9 38711126 38711238 -103560206 - AluY SINE Alu -5 306 195 4914 87 11 8 chr9 38712059 38712717 -103558727 + PABL_A LTR ERV1 1 660 0 6354 88 26 0 chr9 38713206 38714616 -103556828 + L1PA13 LINE L1 4716 6163 0 677 229 20 7 chr9 38714978 38715131 -103556313 + MLT1F LTR MaLR 1 155 -387 731 164 39 0 chr9 38715160 38715288 -103556156 + FLAM_A SINE Alu 1 133 0 2421 81 0 3 chr9 38715299 38715597 -103555847 + AluSx SINE Alu 3 299 -13 2374 111 0 0 chr9 38715606 38715913 -103555531 + AluSq SINE Alu 1 307 -6 255 275 12 0 chr9 38716294 38716374 -103555070 - MIR SINE MIR -114 148 68 1311 163 0 14 chr9 38716442 38716657 -103554787 + AluJo SINE Alu 1 212 -100 205 245 0 19 chr9 38716792 38716845 -103554599 + CT-rich Low_complexity Low_complexity 5 56 0 2623 51 0 16 chr9 38716915 38717231 -103554213 - AluY SINE Alu 0 311 1 365 91 30 15 chr9 38717231 38717297 -103554147 + MLT1D LTR MaLR 439 505 0 410 302 34 70 chr9 38717321 38717517 -103553927 + L2 LINE L2 2271 2473 -841 891 186 6 12 chr9 38717517 38717684 -103553760 - FRAM SINE Alu 0 166 1 410 302 34 70 chr9 38717684 38717857 -103553587 + L2 LINE L2 2473 2715 -599 2339 116 0 3 chr9 38717857 38718168 -103553276 + AluSx SINE Alu 1 310 -2 410 302 34 70 chr9 38718168 38718209 -103553235 + L2 LINE L2 2715 2756 -558 428 169 0 0 chr9 38718489 38718560 -103552884 - AluJ/FLAM SINE Alu -213 99 29 591 178 0 25 chr9 38718608 38718726 -103552718 + FLAM_A SINE Alu 9 123 -19 2897 16 0 0 chr9 38719986 38720297 -103551147 - AluY SINE Alu 0 311 1 1602 93 15 0 chr9 38720690 38720894 -103550550 - AluSq SINE Alu -106 207 1 455 209 152 25 chr9 38720913 38721071 -103550373 + MIR SINE MIR 85 262 0 2287 109 0 3 chr9 38721275 38721578 -103549866 + AluSx SINE Alu 2 303 -9 231 174 72 0 chr9 38721634 38721703 -103549741 + (TCTA)n Simple_repeat Simple_repeat 2 75 0 368 90 0 75 chr9 38721843 38721910 -103549534 - Alu SINE Alu 0 302 241 1729 115 15 15 chr9 38722029 38722289 -103549155 + AluSx SINE Alu 38 297 -15 2449 68 0 0 chr9 38722538 38722830 -103548614 - AluSq SINE Alu -21 292 1 1771 156 17 34 chr9 38722960 38723255 -103548189 - AluJo SINE Alu -22 290 1 1174 125 0 0 chr9 38723258 38723444 -103548000 - AluSg/x SINE Alu 0 312 134 2239 110 3 0 chr9 38723444 38723744 -103547700 - AluSx SINE Alu -11 301 1 2050 134 0 7 chr9 38723922 38724220 -103547224 + AluSx SINE Alu 1 296 -16 240 122 73 0 chr9 38724266 38724307 -103547137 + L1MC4 LINE L1 6660 6703 -1339 194 128 0 21 chr9 38724308 38724339 -103547105 + (TA)n Simple_repeat Simple_repeat 2 33 -14 1862 136 0 11 chr9 38724339 38724611 -103546833 - AluSx SINE Alu -31 281 13 194 128 0 21 chr9 38724611 38724626 -103546818 + (TA)n Simple_repeat Simple_repeat 33 47 0 26 30 0 0 chr9 38724780 38724813 -103546631 + AT_rich Low_complexity Low_complexity 1 33 0 2337 94 0 3 chr9 38725215 38725513 -103545931 + AluSg SINE Alu 1 297 -13 1063 156 0 18 chr9 38725916 38726083 -103545361 + FAM SINE Alu 5 168 -7 207 342 79 9 chr9 38726281 38726395 -103545049 - L2 LINE L2 -224 3048 2927 2247 110 0 0 chr9 38726519 38726809 -103544635 + AluSx SINE Alu 1 290 -22 422 330 134 3 chr9 38726827 38727148 -103544296 - L2 LINE L2 -666 2648 2286 263 275 0 0 chr9 38727319 38727388 -103544056 + MIR3 SINE MIR 92 160 -48 2432 77 0 19 chr9 38727593 38727903 -103543541 - AluY SINE Alu -7 304 1 488 322 57 4 chr9 38728355 38728582 -103542862 + MIR SINE MIR 20 258 -4 2249 98 0 30 chr9 38728876 38729181 -103542263 + AluSq SINE Alu 1 296 -17 2550 69 3 0 chr9 38729450 38729755 -103541689 - AluSp SINE Alu -7 306 1 2522 59 0 16 chr9 38730145 38730451 -103540993 + AluSc SINE Alu 1 301 -8 2413 103 0 0 chr9 38730531 38730842 -103540602 + AluSx SINE Alu 1 311 -1 251 155 17 35 chr9 38730847 38730905 -103540539 + L1ME3 LINE L1 6100 6156 -6 1942 121 40 0 chr9 38731795 38732097 -103539347 - AluSx SINE Alu 0 313 1 2206 91 49 0 chr9 38732219 38732504 -103538940 - AluSx SINE Alu -13 299 1 2352 90 0 13 chr9 38732544 38732844 -103538600 - AluSg SINE Alu -14 296 1 1894 167 6 6 chr9 38733236 38733548 -103537896 + AluJo SINE Alu 1 312 0 1602 146 63 8 chr9 38733686 38733939 -103537505 - AluJo SINE Alu -45 267 1 1970 167 0 0 chr9 38734156 38734449 -103536995 + AluJb SINE Alu 2 294 -18 2139 107 16 26 chr9 38734459 38734767 -103536677 + AluSx SINE Alu 1 305 -7 2315 89 0 3 chr9 38734782 38735073 -103536371 + AluSc SINE Alu 1 290 -19 2093 120 0 62 chr9 38735321 38735646 -103535798 - AluSx SINE Alu -7 305 1 2265 113 0 7 chr9 38736086 38736396 -103535048 + AluSc SINE Alu 2 309 0 9549 189 30 45 chr9 38736396 38737727 -103533717 + L1M2 LINE L1 3200 4460 -1840 2223 125 6 0 chr9 38737727 38738038 -103533406 + AluSq SINE Alu 1 313 0 9549 189 30 45 chr9 38738038 38739353 -103532091 + L1M2 LINE L1 4460 5793 -507 207 0 0 0 chr9 38739353 38739376 -103532068 + (TG)n Simple_repeat Simple_repeat 2 24 0 207 215 0 0 chr9 38739375 38739440 -103532004 + (TA)n Simple_repeat Simple_repeat 2 66 0 2330 132 3 8 chr9 38739466 38739836 -103531608 + L1PB1 LINE L1 5784 6151 0 2151 123 3 0 chr9 38740999 38741292 -103530152 + AluSx SINE Alu 1 294 -18 1404 158 4 25 chr9 38742278 38742519 -103528925 + MER46A DNA MER2_type 1 236 0 2551 56 0 3 chr9 38743812 38744114 -103527330 - AluY SINE Alu -10 301 1 277 319 22 0 chr9 38744502 38744593 -103526851 + L2 LINE L2 1352 1444 -1870 856 231 110 127 chr9 38744596 38745713 -103525731 - L2 LINE L2 0 3313 2212 649 248 79 3 chr9 38745729 38746029 -103525415 - MLT1J LTR MaLR -18 493 97 1174 219 97 21 chr9 38746038 38746317 -103525127 - AluJo SINE Alu -2 300 1 468 139 0 30 chr9 38746331 38746432 -103525012 + (TTTC)n Simple_repeat Simple_repeat 3 100 0 300 88 263 0 chr9 38746432 38746489 -103524955 - HY3 scRNA scRNA -12 89 18 636 214 0 16 chr9 38746604 38746730 -103524714 + FLAM_C SINE Alu 2 125 -18 894 48 0 0 chr9 38746734 38746838 -103524606 + AluY SINE Alu 195 298 -13 1175 145 17 6 chr9 38746853 38747032 -103524412 + AluJo SINE Alu 113 293 -19 572 248 66 50 chr9 38747036 38747256 -103524188 - L2 LINE L2 -1145 2169 1943 2222 110 14 0 chr9 38747256 38747546 -103523898 + AluSx SINE Alu 1 294 -18 572 248 66 50 chr9 38747546 38747567 -103523877 - L2 LINE L2 -1371 1943 1924 2449 93 0 3 chr9 38748676 38748988 -103522456 - AluSx SINE Alu -1 311 1 26 0 0 0 chr9 38749279 38749305 -103522139 + AT_rich Low_complexity Low_complexity 1 26 0 416 110 12 37 chr9 38749329 38749411 -103522033 - L1MA8 LINE L1 -1 6290 6211 2402 91 10 0 chr9 38749447 38749745 -103521699 - AluSx SINE Alu -11 301 1 839 123 15 46 chr9 38749776 38749906 -103521538 - FLAM_C SINE Alu -16 127 2 2204 113 0 35 chr9 38751015 38751325 -103520119 + AluSx SINE Alu 1 299 -13 252 308 48 10 chr9 38751376 38751480 -103519964 + L1M4 LINE L1 4024 4131 -2015 192 209 52 96 chr9 38751542 38751657 -103519787 - MER5A DNA MER1_type -45 144 35 * 512 252 0 8 chr9 38751560 38751679 -103519765 + MER5B DNA MER1_type 60 177 -1 675 186 8 39 chr9 38751713 38751842 -103519602 - FLAM_A SINE Alu -8 125 1 2077 129 0 0 chr9 38751852 38752146 -103519298 - AluJb SINE Alu -18 294 1 364 267 99 89 chr9 38752210 38752617 -103518827 + L1M4 LINE L1 4339 4753 -1393 2072 136 0 3 chr9 38752617 38752912 -103518532 - AluJb SINE Alu -18 294 1 364 267 99 89 chr9 38752912 38752987 -103518457 + L1M4 LINE L1 4753 4826 -1320 1866 164 27 0 chr9 38753046 38753339 -103518105 - AluJb SINE Alu -11 301 1 2298 95 0 0 chr9 38753447 38753743 -103517701 + AluSx SINE Alu 1 296 -16 2217 235 68 69 chr9 38754760 38755063 -103516381 - L1M4 LINE L1 -5756 786 484 2808 3 0 3 chr9 38755063 38755362 -103516082 - AluYa5 SINE Alu -13 298 1 2217 235 68 69 chr9 38755362 38755670 -103515774 - L1M4 LINE L1 -6058 484 174 849 138 15 0 chr9 38755670 38755800 -103515644 - FLAM_C SINE Alu -1 132 1 2217 235 68 69 chr9 38755800 38755970 -103515474 - L1M4 LINE L1 -6368 174 5 192 365 12 35 chr9 38756059 38756144 -103515300 - MIR SINE MIR -176 86 4 1857 142 31 0 chr9 38756171 38756460 -103514984 - AluSx SINE Alu -14 298 1 528 253 57 39 chr9 38756819 38757048 -103514396 - LTR16C LTR ERVL -3 488 256 458 276 111 9 chr9 38758577 38758794 -103512650 - MIR SINE MIR -15 247 9 349 268 297 14 chr9 38759534 38759743 -103511701 - L1ME4a LINE L1 -11 6110 5843 2050 60 32 35 chr9 38760527 38760858 -103510586 + AluY SINE Alu 1 330 0 2272 61 4 0 chr9 38760864 38761144 -103510300 + AluSx SINE Alu 1 281 -31 243 0 0 0 chr9 38761144 38761171 -103510273 + (CA)n Simple_repeat Simple_repeat 2 28 0 463 191 22 0 chr9 38761286 38761375 -103510069 - L1MA10 LINE L1 -53 6281 6191 430 234 81 24 chr9 38761773 38761897 -103509547 - MIR SINE MIR 0 262 132 1911 83 54 14 chr9 38762178 38762456 -103508988 - AluSx SINE Alu -23 289 1 1705 141 37 27 chr9 38763223 38763521 -103507923 + AluJb SINE Alu 1 301 -11 664 244 102 39 chr9 38763687 38764067 -103507377 - MLT1G LTR MaLR -12 543 115 679 184 179 11 chr9 38764737 38764916 -103506528 + MER3 DNA MER1_type 1 209 0 224 333 92 64 chr9 38764926 38765208 -103506236 + L3 LINE CR1 888 1177 -400 205 161 0 0 chr9 38765513 38765544 -103505900 + polypyrimidine Low_complexity Low_complexity 2 32 0 276 130 0 0 chr9 38767377 38767423 -103504021 + (A)n Simple_repeat Simple_repeat 1 46 0 603 213 116 46 chr9 38768497 38768713 -103502731 - MIR SINE MIR -12 250 20 2130 114 0 3 chr9 38770580 38770887 -103500557 - AluSx SINE Alu -6 306 1 2368 72 0 3 chr9 38771439 38771743 -103499701 + AluY SINE Alu 1 303 -8 2197 90 0 35 chr9 38774374 38774684 -103496760 + AluSx SINE Alu 9 307 -5 558 231 103 51 chr9 38774762 38774957 -103496487 - MIR SINE MIR -50 212 8 1793 161 3 0 chr9 38775371 38775669 -103495775 - AluJb SINE Alu -13 299 1 1086 172 14 47 chr9 38776627 38776842 -103494602 - MER3 DNA MER1_type 0 209 2 337 263 0 0 chr9 38776912 38776992 -103494452 + MIR SINE MIR 67 146 -62 329 289 53 0 chr9 38777046 38777160 -103494284 + L1MC4 LINE L1 7793 7912 -130 281 350 102 27 chr9 38777491 38777677 -103493767 + MIR SINE MIR 2 201 -61 2237 89 0 16 chr9 38777745 38778061 -103493383 + AluY SINE Alu 1 311 0 1197 65 0 7 chr9 38778606 38778759 -103492685 - AluSq SINE Alu -12 301 150 1860 120 3 18 chr9 38778820 38779104 -103492340 - AluSx SINE Alu -32 280 1 2076 103 13 3 chr9 38779201 38779501 -103491943 + AluSx SINE Alu 1 303 -9 1602 163 11 3 chr9 38780323 38780606 -103490838 - AluJb SINE Alu -27 285 1 2175 96 3 10 chr9 38780850 38781163 -103490281 + AluSx SINE Alu 1 311 -1 2022 112 0 23 chr9 38781202 38781505 -103489939 - AluSx SINE Alu -16 296 1 2236 90 0 3 chr9 38781515 38781814 -103489630 - AluSx SINE Alu -14 298 1 229 311 78 59 chr9 38781815 38782034 -103489410 - L1ME LINE L1 -504 5617 5395 247 207 37 73 chr9 38782322 38782404 -103489040 - L1P LINE L1 -1140 5006 4928 2134 86 14 3 chr9 38783174 38783464 -103487980 + AluSx SINE Alu 3 295 -17 245 305 177 66 chr9 38783928 38784154 -103487290 - MIR SINE MIR 0 262 12 186 133 0 0 chr9 38784166 38784196 -103487248 + (A)n Simple_repeat Simple_repeat 1 30 0 268 318 102 0 chr9 38784496 38784584 -103486860 - L2 LINE L2 -3 3269 3173 262 267 215 22 chr9 38784726 38784861 -103486583 + MIR3 SINE MIR 33 193 -15 262 226 32 0 chr9 38785206 38785268 -103486176 + Charlie8 DNA MER1_type 2344 2407 -10 24 67 0 0 chr9 38786230 38786275 -103485169 + GC_rich Low_complexity Low_complexity 1 45 0 323 274 10 69 chr9 38786911 38787013 -103484431 + MIR SINE MIR 94 189 -73 24 0 0 0 chr9 38787069 38787093 -103484351 + AT_rich Low_complexity Low_complexity 1 24 0 211 265 60 60 chr9 38788319 38788402 -103483042 - L2 LINE L2 -332 2940 2858 2255 157 25 45 chr9 38788863 38789304 -103482140 - LTR3 LTR ERVK 0 432 1 2189 238 83 18 chr9 38789619 38790170 -103481274 + MLT1K LTR MaLR 2 588 0 2261 111 0 0 chr9 38790170 38790477 -103480967 + AluSx SINE Alu 1 307 -5 2375 68 3 7 chr9 38790542 38790852 -103480592 + AluSp SINE Alu 1 309 -4 1999 141 3 0 chr9 38790865 38791163 -103480281 + AluSx SINE Alu 1 299 -13 331 143 18 0 chr9 38791480 38791536 -103479908 - MLT2B1 LTR ERVL 0 520 464 1451 182 111 22 chr9 38791548 38791895 -103479549 - MLT1B LTR MaLR -9 558 4 238 218 0 18 chr9 38791898 38791953 -103479491 + (TATATG)n Simple_repeat Simple_repeat 6 59 0 243 261 45 23 chr9 38791953 38792041 -103479403 + L1MC4 LINE L1 6614 6703 -1339 * 247 333 0 0 chr9 38791997 38792087 -103479357 - L1MC4 LINE L1 -1339 6703 6614 257 231 62 0 chr9 38792090 38792155 -103479289 + (CATG)n Simple_repeat Simple_repeat 4 72 0 225 193 35 18 chr9 38792155 38792212 -103479232 - L1MCa LINE L1 -4363 2063 2006 236 215 31 0 chr9 38792212 38792277 -103479167 + (CATATA)n Simple_repeat Simple_repeat 5 71 0 233 247 99 0 chr9 38792279 38792360 -103479084 - L1MC4 LINE L1 -1339 6703 6615 1046 205 73 24 chr9 38792373 38792607 -103478837 - MLT2D LTR ERVL -20 534 313 1778 128 53 0 chr9 38792607 38792888 -103478556 + AluSx SINE Alu 1 296 -16 1046 205 73 24 chr9 38792888 38792990 -103478454 - MLT2D LTR ERVL -241 313 83 2189 106 0 0 chr9 38792990 38793282 -103478162 + AluSq SINE Alu 1 292 -21 1090 92 0 7 chr9 38793282 38793465 -103477979 + AluSg/x SINE Alu 132 313 0 24 41 0 20 chr9 38793495 38793515 -103477929 + AT_rich Low_complexity Low_complexity 1 20 -28 2087 134 0 0 chr9 38793515 38793821 -103477623 + AluSx SINE Alu 1 306 -6 24 41 0 20 chr9 38793821 38793849 -103477595 + AT_rich Low_complexity Low_complexity 20 48 0 2255 77 3 13 chr9 38793864 38794176 -103477268 - AluY SINE Alu -2 309 1 6264 119 29 36 chr9 38794184 38794348 -103477096 - L1MA3 LINE L1 0 6305 6141 2334 25 43 4 chr9 38794348 38794629 -103476815 - AluY SINE Alu -18 293 2 6264 119 29 36 chr9 38794629 38794713 -103476731 - L1MA3 LINE L1 -164 6141 6058 859 113 0 64 chr9 38794713 38794854 -103476590 - FLAM_C SINE Alu -1 132 1 6264 119 29 36 chr9 38794854 38795006 -103476438 - L1MA3 LINE L1 -247 6058 5907 2184 123 0 0 chr9 38795006 38795316 -103476128 - AluSx SINE Alu -2 310 1 6264 119 29 36 chr9 38795316 38795867 -103475577 - L1MA3 LINE L1 -398 5907 5354 2075 116 3 3 chr9 38795867 38796170 -103475274 - AluSg SINE Alu -7 303 1 6264 119 29 36 chr9 38796170 38796767 -103474677 - L1MA3 LINE L1 -951 5354 4756 3640 117 2 4 chr9 38796783 38797295 -103474149 - MER9 LTR ERVK 0 511 1 1650 191 19 22 chr9 38797295 38797662 -103473782 - L1M1 LINE L1 -3524 4041 3676 1951 119 14 10 chr9 38797662 38797956 -103473488 - AluSx SINE Alu -17 295 1 2168 74 40 74 chr9 38797956 38797977 -103473467 - L1 LINE L1 -3956 3609 3589 1944 148 128 18 chr9 38797977 38798361 -103473083 + MSTA LTR MaLR 1 426 -2 2168 74 40 74 chr9 38798361 38798399 -103473045 - L1 LINE L1 -3976 3589 3551 2111 102 3 0 chr9 38798399 38798692 -103472752 + AluY SINE Alu 3 296 -15 2168 74 40 74 chr9 38798692 38799011 -103472433 - L1 LINE L1 -4014 3551 3243 2209 99 0 7 chr9 38799011 38799313 -103472131 - AluSx SINE Alu -12 300 1 380 76 0 61 chr9 38799324 38799390 -103472054 - AluSx SINE Alu -1 301 240 1259 111 0 0 chr9 38799390 38799561 -103471883 - AluSx SINE Alu -141 171 1 1181 112 5 0 chr9 38799561 38799748 -103471696 - L1M1 LINE L1 -4469 3096 2909 1020 175 0 6 chr9 38799748 38799925 -103471519 - AluSg/x SINE Alu 0 312 137 14121 119 56 49 chr9 38799926 38800390 -103471054 - L1M1 LINE L1 -4631 2934 2475 1939 154 0 0 chr9 38800390 38800696 -103470748 - AluSx SINE Alu -6 306 1 14121 119 56 49 chr9 38800696 38800739 -103470705 - L1M1 LINE L1 -5090 2475 2434 1967 111 20 7 chr9 38800739 38801036 -103470408 - AluSx SINE Alu -11 301 1 14121 119 56 49 chr9 38801036 38801232 -103470212 - L1M1 LINE L1 -5131 2434 2241 2092 102 6 29 chr9 38801232 38801546 -103469898 + AluSq SINE Alu 1 307 -6 14121 119 56 49 chr9 38801546 38801565 -103469879 - L1M1 LINE L1 -5324 2241 2224 1766 113 6 69 chr9 38801565 38801884 -103469560 + AluSp SINE Alu 1 299 -14 14121 119 56 49 chr9 38801884 38802802 -103468642 - L1M1 LINE L1 -5341 2224 1266 1769 148 34 0 chr9 38802802 38803100 -103468344 - AluSx SINE Alu -2 310 3 14121 119 56 49 chr9 38803100 38803884 -103467560 - L1M1 LINE L1 -6299 1266 489 1405 93 16 0 chr9 38803885 38804079 -103467365 + AluSg/x SINE Alu 106 302 -8 1711 147 0 61 chr9 38804466 38804792 -103466652 + AluJo SINE Alu 2 307 -5 2138 86 3 17 chr9 38805114 38805415 -103466029 - AluSx SINE Alu -15 297 1 829 183 0 0 chr9 38805421 38805552 -103465892 - FLAM_C SINE Alu -2 131 1 434 203 70 39 chr9 38808405 38808533 -103462911 - MIR3 SINE MIR -29 179 48 373 243 10 68 chr9 38808888 38808991 -103462453 + MIR SINE MIR 85 181 -81 530 107 0 0 chr9 38808991 38809075 -103462369 - Alu SINE Alu -1 311 228 4678 49 12 40 chr9 38809075 38809398 -103462046 + LTR8 LTR ERV1 1 331 -360 2352 87 10 0 chr9 38809398 38809698 -103461746 - AluSp SINE Alu -10 303 1 4678 49 12 40 chr9 38809698 38809961 -103461483 + LTR8 LTR ERV1 331 570 -121 2280 90 0 40 chr9 38809961 38810284 -103461160 + AluSx SINE Alu 1 310 -2 4678 49 12 40 chr9 38810284 38810351 -103461093 + LTR8 LTR ERV1 570 637 -54 1441 90 0 0 chr9 38810387 38810565 -103460879 - AluSq SINE Alu -135 178 1 2366 81 7 0 chr9 38811667 38811965 -103459479 - AluSg SINE Alu -10 300 1 183 245 0 96 chr9 38812504 38812598 -103458846 - MIR3 SINE MIR -33 175 91 231 36 0 0 chr9 38812862 38812890 -103458554 + (TG)n Simple_repeat Simple_repeat 1 28 0 2040 118 49 7 chr9 38815307 38815594 -103455850 - AluSx SINE Alu -13 299 1 1466 284 130 31 chr9 38815774 38816431 -103455013 + L2 LINE L2 1920 2778 -535 2121 122 3 3 chr9 38816431 38816726 -103454718 - AluSx SINE Alu -4 308 14 1466 284 130 31 chr9 38816726 38816929 -103454515 + L2 LINE L2 2778 2960 -353 239 208 42 0 chr9 38816929 38816977 -103454467 + polypyrimidine Low_complexity Low_complexity 2 51 0 736 224 22 22 chr9 38816977 38817160 -103454284 - FRAM SINE Alu -1 175 1 1521 91 5 5 chr9 38817176 38817375 -103454069 + AluSp SINE Alu 1 199 -114 337 176 0 0 chr9 38817375 38817426 -103454018 - Alu SINE Alu -257 51 1 462 318 63 63 chr9 38817464 38817513 -103453931 + L2 LINE L2 3012 3060 -253 2113 139 10 0 chr9 38817513 38817814 -103453630 - AluSx SINE Alu -8 304 1 462 318 63 63 chr9 38817814 38818066 -103453378 + L2 LINE L2 3059 3313 0 2307 112 0 0 chr9 38818421 38818716 -103452728 - AluSx SINE Alu -17 295 1 476 296 0 0 chr9 38818887 38819002 -103452442 + L2 LINE L2 3198 3312 -1 1694 159 32 174 chr9 38819082 38819386 -103452058 + L1MB3 LINE L1 5444 5789 -385 2385 114 0 0 chr9 38819386 38819693 -103451751 + AluSx SINE Alu 1 307 -5 1694 159 32 174 chr9 38819693 38819852 -103451592 + L1MB3 LINE L1 5789 5969 -205 2374 119 0 0 chr9 38819852 38820162 -103451282 + AluSx SINE Alu 1 310 -2 2089 109 0 44 chr9 38820171 38820502 -103450942 + AluSg SINE Alu 1 318 0 1694 159 32 174 chr9 38820502 38820648 -103450796 + L1MB3 LINE L1 5812 5977 -197 1843 124 7 7 chr9 38820648 38820922 -103450522 - MER1B DNA MER1_type -65 274 1 849 163 6 6 chr9 38820922 38821082 -103450362 + L1MB3 LINE L1 6015 6174 -9 1811 175 10 16 chr9 38821082 38821259 -103450185 - AluJo SINE Alu 0 312 136 2387 115 0 0 chr9 38821259 38821571 -103449873 - AluSx SINE Alu 0 312 1 1811 175 10 16 chr9 38821571 38821707 -103449737 - AluJo SINE Alu -176 136 1 2308 93 10 0 chr9 38821896 38822186 -103449258 - AluSx SINE Alu -19 293 1 225 326 11 0 chr9 38822958 38823047 -103448397 + L1MC/D LINE L1 5768 5857 -1951 692 135 9 0 chr9 38823277 38823388 -103448056 + AluSg/x SINE Alu 174 285 -27 209 0 98 0 chr9 38823402 38823443 -103448001 + (TA)n Simple_repeat Simple_repeat 2 46 0 2244 117 7 10 chr9 38823571 38823880 -103447564 - AluSx SINE Alu -4 308 1 228 244 0 16 chr9 38824282 38824344 -103447100 + MIR SINE MIR 93 152 -63 1872 125 25 66 chr9 38824352 38824672 -103446772 - AluSq SINE Alu -6 307 1 2591 84 0 0 chr9 38824723 38825031 -103446413 - AluSq SINE Alu -5 308 1 230 287 23 23 chr9 38825902 38825989 -103445455 - MIR SINE MIR -95 113 27 380 275 84 51 chr9 38826842 38827020 -103444424 + MIR3 SINE MIR 20 203 -5 314 214 131 0 chr9 38827259 38827343 -103444101 - MER5A DNA MER1_type -80 109 15 * 638 241 12 31 chr9 38827337 38827438 -103444006 + MER5B DNA MER1_type 20 118 -60 2391 98 0 6 chr9 38827438 38827753 -103443691 - AluSp SINE Alu 0 313 1 638 241 12 31 chr9 38827753 38827813 -103443631 + MER5B DNA MER1_type 118 178 0 307 261 56 21 chr9 38827813 38827937 -103443507 - MIR3 SINE MIR -40 168 40 300 231 14 91 chr9 38828549 38828692 -103442752 + L2 LINE L2 3136 3267 -5 2297 115 0 0 chr9 38829238 38829533 -103441911 - AluSx SINE Alu -17 295 1 404 241 92 7 chr9 38829933 38830074 -103441370 - L2 LINE L2 -500 2814 2662 827 206 58 26 chr9 38830318 38830507 -103440937 + MLT2B3 LTR ERVL 1 195 -359 2747 207 76 2 chr9 38830533 38831113 -103440331 + MSTD-int LTR MaLR 1113 1735 0 986 192 108 45 chr9 38831113 38831441 -103440003 + MSTD LTR MaLR 1 394 -2 485 115 58 13 chr9 38831680 38831836 -103439608 + (TCCA)n Simple_repeat Simple_repeat 1 163 0 194 91 30 76 chr9 38831891 38831957 -103439487 + (TCCA)n Simple_repeat Simple_repeat 4 66 0 263 339 68 0 chr9 38831976 38832094 -103439350 - L2 LINE L2 -24 3248 3123 984 155 6 0 chr9 38833039 38833220 -103438224 + L1MB2 LINE L1 5990 6171 0 660 292 214 3 chr9 38833471 38833813 -103437631 + L3 LINE CR1 1157 1570 -7 281 238 16 0 chr9 38835073 38835136 -103436308 - MIR SINE MIR -68 140 77 1318 125 0 0 chr9 38835661 38835845 -103435599 + AluJb SINE Alu 118 301 -11 714 245 28 47 chr9 38836211 38836423 -103435021 + MIR SINE MIR 55 262 0 187 275 44 77 chr9 38836637 38836728 -103434716 - MIR SINE MIR -60 148 61 312 281 148 27 chr9 38837351 38837574 -103433870 + MIR SINE MIR 5 253 -9 2258 96 0 0 chr9 38838994 38839276 -103432168 + AluSg SINE Alu 20 301 -9 286 289 101 0 chr9 38839443 38839580 -103431864 - MIR3 SINE MIR -27 181 29 22 35 0 0 chr9 38840555 38840584 -103430860 + GC_rich Low_complexity Low_complexity 1 29 0 23 54 0 0 chr9 38840810 38840847 -103430597 + GC_rich Low_complexity Low_complexity 1 37 0 210 339 23 0 chr9 38841359 38841489 -103429955 + L2 LINE L2 2834 2966 -306 753 189 20 0 chr9 38841914 38842062 -103429382 + MER7A DNA MER2_type 16 164 -182 872 94 14 58 chr9 38842106 38842244 -103429200 + FLAM_C SINE Alu 1 132 -11 297 0 0 0 chr9 38842750 38842783 -103428661 + (TG)n Simple_repeat Simple_repeat 2 34 0 2029 105 36 4 chr9 38842783 38843059 -103428385 - AluSx SINE Alu -27 285 1 367 237 50 22 chr9 38843067 38843206 -103428238 - L1MEc LINE L1 -4000 2396 2254 2115 115 0 35 chr9 38843210 38843523 -103427921 - AluSx SINE Alu -10 302 1 267 301 31 25 chr9 38843528 38843724 -103427720 + L1M4 LINE L1 2683 2879 -3267 1839 163 3 43 chr9 38843787 38844112 -103427332 + AluJo SINE Alu 1 312 0 318 357 32 45 chr9 38844119 38844276 -103427168 + MIR SINE MIR 12 166 -96 727 176 84 0 chr9 38844281 38844423 -103427021 - FRAM SINE Alu -12 154 1 2278 113 0 3 chr9 38844635 38844945 -103426499 + AluSx SINE Alu 2 310 -2 2356 107 0 0 chr9 38845500 38845798 -103425646 - AluSg SINE Alu -12 298 1 1829 176 7 10 chr9 38845976 38846277 -103425167 + AluJo SINE Alu 1 300 -12 2081 156 0 0 chr9 38846290 38846591 -103424853 - AluSx SINE Alu -11 301 1 2346 96 0 40 chr9 38846755 38847079 -103424365 - AluSx SINE Alu -1 311 1 23 33 0 0 chr9 38847091 38847121 -103424323 + AT_rich Low_complexity Low_complexity 1 30 0 368 241 80 70 chr9 38847393 38847580 -103423864 + L1M4 LINE L1 3120 3308 -2838 1501 106 4 31 chr9 38847693 38847950 -103423494 + AluSq SINE Alu 84 313 0 1149 178 6 132 chr9 38847953 38848295 -103423149 + AluJb SINE Alu 2 300 -2 445 301 89 42 chr9 38848298 38848823 -103422621 + L1M4 LINE L1 3856 4405 -1741 419 235 62 31 chr9 38849439 38849601 -103421843 + LTR33 LTR ERVL 1 167 -354 748 192 34 23 chr9 38849627 38849804 -103421640 + LTR33 LTR ERVL 343 521 0 2018 137 29 10 chr9 38849818 38850124 -103421320 - AluJb SINE Alu 0 312 1 199 299 80 43 chr9 38851764 38851951 -103419493 + L2 LINE L2 2889 3082 -190 545 257 68 33 chr9 38852141 38852471 -103418973 + MLT1I LTR MaLR 1 365 -44 1129 135 0 56 chr9 38852771 38852949 -103418495 - AluSc SINE Alu -13 296 129 26 0 0 0 chr9 38853047 38853073 -103418371 + AT_rich Low_complexity Low_complexity 1 26 0 826 159 0 0 chr9 38854894 38855026 -103416418 + FLAM_C SINE Alu 1 132 -1 374 308 77 7 chr9 38855404 38855547 -103415897 + MIR3 SINE MIR 40 192 -16 456 309 63 45 chr9 38856551 38856774 -103414670 + MIR SINE MIR 9 235 -27 433 239 89 18 chr9 38857077 38857211 -103414233 + MIR SINE MIR 2 153 -55 2570 47 0 3 chr9 38857249 38857545 -103413899 - AluY SINE Alu -16 295 1 27 0 0 0 chr9 38857550 38857577 -103413867 + AT_rich Low_complexity Low_complexity 1 27 0 571 300 52 26 chr9 38857664 38857897 -103413547 + L2 LINE L2 3075 3313 0 2383 85 3 0 chr9 38859503 38859797 -103411647 - AluSg SINE Alu -15 295 1 2416 73 7 0 chr9 38861071 38861372 -103410072 + AluSp SINE Alu 1 303 -10 21 36 0 0 chr9 38861674 38861702 -103409742 + AT_rich Low_complexity Low_complexity 1 28 0 327 306 12 12 chr9 38862053 38862138 -103409306 + L2 LINE L2 3210 3294 -19 2199 109 0 0 chr9 38862155 38862465 -103408979 - AluSx SINE Alu 0 310 1 1812 132 30 0 chr9 38862629 38862919 -103408525 - AluSx SINE Alu 0 306 9 649 233 117 49 chr9 38862971 38863194 -103408250 - L1MC/D LINE L1 -2183 5625 5388 1157 280 78 24 chr9 38863194 38863619 -103407825 + MLT1J2 LTR MaLR 1 448 -2 354 198 81 0 chr9 38863624 38863710 -103407734 - L1MC/D LINE L1 -2419 5389 5297 325 309 105 69 chr9 38864696 38865000 -103406444 + L2 LINE L2 2953 3267 -5 1511 79 0 10 chr9 38865353 38865556 -103405888 - AluY SINE Alu -8 303 103 2251 100 3 3 chr9 38865804 38866105 -103405339 + AluSp SINE Alu 1 301 -12 443 283 18 0 chr9 38867181 38867294 -103404150 - MIR3 SINE MIR 0 208 94 1889 163 3 0 chr9 38867642 38867936 -103403508 - AluJb SINE Alu -17 295 1 523 254 106 64 chr9 38868901 38869137 -103402307 + MIR SINE MIR 17 262 0 2287 89 0 54 chr9 38869874 38870190 -103401254 - AluSg SINE Alu -11 299 1 2500 69 0 7 chr9 38870371 38870675 -103400769 - AluY SINE Alu -9 302 1 21 0 0 0 chr9 38870684 38870705 -103400739 + AT_rich Low_complexity Low_complexity 1 21 0 24 35 0 53 chr9 38870934 38870960 -103400484 + AT_rich Low_complexity Low_complexity 1 27 -27 2229 114 0 10 chr9 38870960 38871257 -103400187 + AluSq SINE Alu 1 294 -19 24 35 0 53 chr9 38871257 38871287 -103400157 + AT_rich Low_complexity Low_complexity 27 54 0 2201 68 11 0 chr9 38871388 38871668 -103399776 - AluY SINE Alu -28 283 1 261 241 60 17 chr9 38872101 38872217 -103399227 - L1ME4a LINE L1 -1 6120 6000 553 209 58 22 chr9 38872644 38872783 -103398661 - L2 LINE L2 0 3313 3170 2204 110 3 0 chr9 38872791 38873082 -103398362 + AluSx SINE Alu 1 292 -20 1211 115 52 0 chr9 38873092 38873266 -103398178 + AluSg/x SINE Alu 130 312 0 225 100 0 0 chr9 38873266 38873316 -103398128 - LTR66 LTR ERVL -167 443 394 358 318 47 0 chr9 38873719 38873826 -103397618 - MIR3 SINE MIR -15 193 82 267 244 42 67 chr9 38873975 38874094 -103397350 + MLT1J LTR MaLR 37 152 -359 273 196 54 0 chr9 38874207 38874263 -103397181 + MLT1J LTR MaLR 312 370 -141 2240 101 0 3 chr9 38874628 38874926 -103396518 - AluY SINE Alu -14 297 1 2214 88 48 0 chr9 38876349 38876644 -103394800 + AluSc SINE Alu 1 309 0 688 249 21 51 chr9 38877578 38877815 -103393629 - L1ME2 LINE L1 -1 6163 5934 1265 152 18 36 chr9 38877815 38878039 -103393405 + AluJo SINE Alu 1 220 -92 1372 166 49 0 chr9 38878063 38878328 -103393116 - Charlie1b DNA MER1_type -105 418 141 1955 151 0 0 chr9 38878328 38878654 -103392790 - AluJb SINE Alu 0 328 3 1332 238 203 28 chr9 38878656 38879237 -103392207 - L1ME3 LINE L1 -113 6049 5367 5535 125 22 58 chr9 38879246 38879630 -103391814 - L1MA8 LINE L1 -3 6288 5905 2439 232 26 80 chr9 38879630 38880247 -103391197 - L1PB3 LINE L1 -217 5937 5288 2360 103 0 13 chr9 38880247 38880558 -103390886 - AluSx SINE Alu -5 307 1 2439 232 26 80 chr9 38880558 38880655 -103390789 - L1PB3 LINE L1 -866 5288 5187 195 42 0 0 chr9 38880655 38880679 -103390765 + (TG)n Simple_repeat Simple_repeat 1 24 0 2439 232 26 80 chr9 38880679 38881029 -103390415 - L1PB3 LINE L1 -967 5187 4820 2252 85 3 3 chr9 38881029 38881345 -103390099 - AluSq SINE Alu 0 316 1 1750 153 14 20 chr9 38881353 38881512 -103389932 - AluJb SINE Alu -20 292 134 2353 74 27 17 chr9 38881512 38881811 -103389633 - AluSq SINE Alu -11 302 1 1750 153 14 20 chr9 38881811 38881945 -103389499 - AluJb SINE Alu -178 134 1 2439 232 26 80 chr9 38881945 38882008 -103389436 - L1PB3 LINE L1 -1246 4908 4843 1138 273 94 0 chr9 38881999 38882394 -103389050 - L1MEc LINE L1 -2369 3711 3280 * 675 143 20 0 chr9 38882396 38882494 -103388950 - AluSg/x SINE Alu -20 289 190 2842 256 160 36 chr9 38882494 38884449 -103386995 - L1MEc LINE L1 -3233 2847 525 745 324 39 32 chr9 38884603 38884908 -103386536 - L1MEc LINE L1 -5617 453 143 2162 100 0 62 chr9 38884908 38885229 -103386215 + AluSx SINE Alu 1 301 -11 745 324 39 32 chr9 38885229 38885364 -103386080 - L1MEc LINE L1 -5927 143 10 247 358 37 0 chr9 38885703 38885837 -103385607 + L2 LINE L2 2069 2207 -1107 27 92 0 0 chr9 38887080 38887156 -103384288 + AT_rich Low_complexity Low_complexity 1 76 0 556 248 0 8 chr9 38887222 38887339 -103384105 - L2 LINE L2 -1 3312 3197 1761 160 51 0 chr9 38887418 38887595 -103383849 - AluSx SINE Alu -4 308 109 333 0 0 0 chr9 38887595 38887632 -103383812 + (TG)n Simple_repeat Simple_repeat 2 38 0 1761 160 51 0 chr9 38887632 38887747 -103383697 - AluSx SINE Alu -203 109 1 2659 89 29 0 chr9 38887764 38888114 -103383330 - MER46B DNA MER2_type -1 235 1 2159 102 3 14 chr9 38888570 38888863 -103382581 - AluSx SINE Alu -22 290 1 201 259 0 56 chr9 38889454 38889508 -103381936 + L2 LINE L2 3258 3308 -5 4068 59 0 0 chr9 38889946 38890424 -103381020 - L1PA7 LINE L1 0 6154 5677 1971 56 342 146 chr9 38890826 38891312 -103380132 + LTR12 LTR ERV1 1 581 -133 1568 168 33 36 chr9 38891852 38892155 -103379289 - AluJo SINE Alu -5 307 6 1718 191 3 0 chr9 38892538 38892826 -103378618 - AluJo SINE Alu -23 289 1 398 114 14 0 chr9 38892838 38892908 -103378536 + (TTCC)n Simple_repeat Simple_repeat 4 74 0 2064 115 4 0 chr9 38892908 38893187 -103378257 - AluSx SINE Alu -32 280 1 1763 171 20 3 chr9 38893187 38893486 -103377958 - AluSx SINE Alu -8 304 1 581 293 18 66 chr9 38893513 38893848 -103377596 - L1ME LINE L1 -302 5819 5501 470 248 58 0 chr9 38894502 38894623 -103376821 + MER20 DNA MER1_type 89 216 -3 209 116 0 23 chr9 38894669 38894712 -103376732 + (CAAAA)n Simple_repeat Simple_repeat 5 46 0 1488 189 89 0 chr9 38895140 38895410 -103376034 + AluJb SINE Alu 1 294 -18 330 26 0 0 chr9 38895411 38895450 -103375994 + (GA)n Simple_repeat Simple_repeat 1 39 0 2314 94 3 0 chr9 38895750 38896048 -103375396 - AluSx SINE Alu -13 299 1 210 293 76 86 chr9 38896354 38896552 -103374892 + L2 LINE L2 2895 3090 -182 278 338 144 19 chr9 38897414 38897574 -103373870 - MER5A DNA MER1_type -5 184 5 269 299 9 28 chr9 38897576 38897683 -103373761 - MIR SINE MIR -64 144 40 446 208 10 0 chr9 38898014 38898110 -103373334 - L1ME3A LINE L1 -312 5858 5762 2252 85 3 0 chr9 38898405 38898739 -103372705 + AluSp SINE Alu 1 335 0 1383 173 0 9 chr9 38898965 38899185 -103372259 + MER20 DNA MER1_type 2 219 0 302 243 14 14 chr9 38899323 38899393 -103372051 - MIR3 SINE MIR -41 167 98 614 183 0 10 chr9 38899417 38899521 -103371923 + MER58A DNA MER1_type 1 103 -4 23 0 0 0 chr9 38899521 38899544 -103371900 + AT_rich Low_complexity Low_complexity 1 23 0 290 152 0 0 chr9 38899572 38899618 -103371826 - FLAM SINE Alu -7 126 81 510 221 48 62 chr9 38899655 38899800 -103371644 + MER58A DNA MER1_type 82 224 0 277 297 0 0 chr9 38900954 38901018 -103370426 + MER63 DNA MER1_type 997 1060 -1 233 291 0 0 chr9 38902338 38902393 -103369051 + MLT1H LTR MaLR 1 55 -494 905 252 123 36 chr9 38902489 38902791 -103368653 + MLT1H LTR MaLR 209 536 -13 315 316 146 59 chr9 38903026 38903279 -103368165 + L2 LINE L2 2995 3269 -3 317 284 0 14 chr9 38903577 38903651 -103367793 + MER63 DNA MER1_type 675 747 -315 313 183 0 73 chr9 38903632 38903714 -103367730 + MER63 DNA MER1_type 970 1045 -16 * 376 355 56 28 chr9 38903937 38904261 -103367183 - L2 LINE L2 -558 2756 2424 486 46 0 0 chr9 38904321 38904386 -103367058 + (TG)n Simple_repeat Simple_repeat 2 66 0 184 344 73 10 chr9 38904532 38904628 -103366816 - L2 LINE L2 -1037 2277 2176 404 320 147 0 chr9 38906854 38907004 -103364440 - L3 LINE CR1 -3 1574 1403 21 0 0 0 chr9 38907372 38907393 -103364051 + AT_rich Low_complexity Low_complexity 1 21 0 524 272 100 60 chr9 38907549 38908117 -103363327 - L1MEc LINE L1 -4729 1581 1037 1747 94 5 5 chr9 38908117 38908341 -103363103 - AluSx SINE Alu -88 224 1 524 272 100 60 chr9 38908341 38909105 -103362339 - L1MEc LINE L1 -5273 1037 102 24 53 0 0 chr9 38912031 38912069 -103359375 + AT_rich Low_complexity Low_complexity 1 38 0 243 0 0 0 chr9 38912494 38912521 -103358923 + (T)n Simple_repeat Simple_repeat 1 27 0 343 282 81 24 chr9 38912664 38912788 -103358656 - MIR SINE MIR -38 224 94 2291 100 0 0 chr9 38914605 38914895 -103356549 - AluSx SINE Alu -20 292 3 2028 136 7 0 chr9 38914972 38915266 -103356178 + AluSx SINE Alu 1 296 -16 2240 127 3 0 chr9 38915289 38915589 -103355855 + AluSq SINE Alu 1 301 -12 244 239 0 0 chr9 38916190 38916236 -103355208 - L2 LINE L2 -17 3255 3210 405 0 0 0 chr9 38916311 38916356 -103355088 + (TG)n Simple_repeat Simple_repeat 2 46 0 313 288 234 46 chr9 38916850 38917281 -103354163 - L2 LINE L2 -950 2364 1853 806 164 8 0 chr9 38917333 38917461 -103353983 + FLAM_C SINE Alu 1 129 -4 2305 101 3 0 chr9 38918278 38918575 -103352869 - AluSx SINE Alu -14 298 1 6929 11 1 0 chr9 38919035 38919905 -103351539 - L1PA3 LINE L1 0 6155 5333 1751 178 0 10 chr9 38919905 38920214 -103351230 - AluJb SINE Alu -6 306 1 481 131 12 0 chr9 38920859 38920943 -103350501 + L1MC5 LINE L1 7155 7239 -722 894 182 53 5 chr9 38920993 38921180 -103350264 - MER3 DNA MER1_type -13 196 1 1258 225 113 33 chr9 38921180 38921731 -103349713 + L1MC5 LINE L1 7330 7924 -37 297 177 21 52 chr9 38921735 38921831 -103349613 + GA-rich Low_complexity Low_complexity 2 94 0 777 296 12 24 chr9 38922061 38922308 -103349136 + MIR SINE MIR 5 248 -14 189 286 111 0 chr9 38922347 38922410 -103349034 + MIR3 SINE MIR 136 205 -3 28 0 0 0 chr9 38923030 38923058 -103348386 + AT_rich Low_complexity Low_complexity 1 28 0 288 222 37 102 chr9 38923096 38923204 -103348240 - L2 LINE L2 -10 3303 3203 22 0 0 0 chr9 38923231 38923253 -103348191 + AT_rich Low_complexity Low_complexity 1 22 0 2037 232 64 31 chr9 38924547 38925216 -103346228 - L1MC4 LINE L1 -18 8024 7334 842 150 0 8 chr9 38925265 38925398 -103346046 - FLAM_C SINE Alu 0 133 2 414 274 195 0 chr9 38925603 38925716 -103345728 - L2 LINE L2 -5 3267 3133 309 307 18 0 chr9 38925720 38925834 -103345610 - MIR SINE MIR 0 262 147 447 309 198 26 chr9 38925862 38926483 -103344961 - L2 LINE L2 -946 2368 1641 3218 253 162 21 chr9 38926634 38926707 -103344737 - L2 LINE L2 -51 3262 3201 231 114 0 0 chr9 38926707 38926742 -103344702 + (TA)n Simple_repeat Simple_repeat 2 36 0 3218 253 162 21 chr9 38926742 38927989 -103343455 - L2 LINE L2 -112 3201 1769 1652 243 62 74 chr9 38928029 38928136 -103343308 + MER21B LTR ERV1 24 131 -732 1137 121 167 5 chr9 38928136 38928334 -103343110 - MER30 DNA MER1_type 0 230 1 1652 243 62 74 chr9 38928334 38928946 -103342498 + MER21B LTR ERV1 131 735 -128 243 371 34 0 chr9 38929006 38929095 -103342349 - L2 LINE L2 -44 3228 3137 244 301 83 38 chr9 38929158 38929291 -103342153 - L2 LINE L2 -1903 1411 1273 312 27 0 0 chr9 38929586 38929623 -103341821 + (TA)n Simple_repeat Simple_repeat 1 37 0 1857 128 49 21 chr9 38930135 38930423 -103341021 - AluSx SINE Alu -16 296 1 283 257 97 9 chr9 38930940 38931053 -103340391 - L1ME4a LINE L1 -30 6091 5969 24 0 0 0 chr9 38931768 38931792 -103339652 + AT_rich Low_complexity Low_complexity 1 24 0 192 125 0 0 chr9 38932206 38932238 -103339206 + (CATATA)n Simple_repeat Simple_repeat 3 34 0 35 71 0 0 chr9 38932332 38932402 -103339042 + AT_rich Low_complexity Low_complexity 1 70 0 335 239 58 97 chr9 38932560 38932715 -103338729 - L1MC4 LINE L1 -43 7999 7851 180 315 54 45 chr9 38932769 38932880 -103338564 + L2 LINE L2 2675 2786 -528 4951 152 31 22 chr9 38933239 38934408 -103337036 + L1P5 LINE L1 4119 5327 -824 2377 58 3 49 chr9 38934408 38934734 -103336710 + AluY SINE Alu 1 311 0 4951 152 31 22 chr9 38934734 38935196 -103336248 + L1P5 LINE L1 5327 5783 -368 2939 81 50 20 chr9 38935197 38935282 -103336162 + L1PB1 LINE L1 5695 5776 -375 378 0 0 0 chr9 38935282 38935324 -103336120 + (CA)n Simple_repeat Simple_repeat 2 43 0 2939 81 50 20 chr9 38935324 38935680 -103335764 + L1PB1 LINE L1 5776 6149 -2 262 266 38 13 chr9 38936650 38936729 -103334715 + L2 LINE L2 3229 3309 -4 916 254 195 49 chr9 38936834 38937671 -103333773 + L2 LINE L2 2359 3312 -1 21 0 0 0 chr9 38937706 38937727 -103333717 + AT_rich Low_complexity Low_complexity 1 21 0 204 260 0 20 chr9 38938608 38938658 -103332786 - MIR3 SINE MIR -11 197 149 1119 128 6 0 chr9 38938727 38938906 -103332538 - L1MB7 LINE L1 -9 6175 5996 191 61 30 0 chr9 38938920 38938953 -103332491 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 264 268 21 31 chr9 38938953 38939050 -103332394 + MER103 DNA DNA 61 156 -10 242 262 148 57 chr9 38939070 38939192 -103332252 - MIR SINE MIR -42 220 88 277 286 13 26 chr9 38939284 38939361 -103332083 - MIR3 SINE MIR -52 156 81 1606 136 73 7 chr9 38939445 38939718 -103331726 - AluJb SINE Alu -21 291 1 21 0 0 0 chr9 38939726 38939747 -103331697 + AT_rich Low_complexity Low_complexity 1 21 0 412 287 99 89 chr9 38940268 38940924 -103330520 + L1M2 LINE L1 775 1415 -5434 300 244 87 9 chr9 38941024 38941139 -103330305 - MIR3 SINE MIR -9 199 76 27 0 0 0 chr9 38941360 38941387 -103330057 + AT_rich Low_complexity Low_complexity 1 27 0 1731 139 0 7 chr9 38941395 38941668 -103329776 - AluJb SINE Alu -41 271 1 403 220 114 23 chr9 38941996 38942128 -103329316 - L1MC5 LINE L1 -309 7652 7509 919 248 71 24 chr9 38942220 38942514 -103328930 - MER93a LTR ERV1 -3 399 92 804 146 0 29 chr9 38942700 38942837 -103328607 + FLAM_C SINE Alu 1 133 0 1551 94 0 0 chr9 38942966 38943157 -103328287 + AluSg SINE Alu 1 191 -119 1585 152 27 0 chr9 38943166 38943429 -103328015 - L1MC1 LINE L1 -5 6328 6059 225 211 0 0 chr9 38943429 38943481 -103327963 + Charlie5 DNA MER1_type 2542 2593 -19 1619 186 0 17 chr9 38943511 38943806 -103327638 - AluJo SINE Alu -22 290 1 420 330 81 25 chr9 38943927 38944285 -103327159 + L2 LINE L2 2774 3153 -160 24 0 0 0 chr9 38944293 38944317 -103327127 + AT_rich Low_complexity Low_complexity 1 24 0 204 40 0 0 chr9 38944419 38944444 -103327000 + (CA)n Simple_repeat Simple_repeat 2 26 0 2114 130 0 13 chr9 38944447 38944748 -103326696 - AluJb SINE Alu -15 297 1 21 82 0 0 chr9 38946364 38946413 -103325031 + AT_rich Low_complexity Low_complexity 1 49 0 3640 119 37 54 chr9 38946851 38947531 -103323913 + L1MC1 LINE L1 5660 6327 -6 264 338 0 65 chr9 38948789 38948899 -103322545 + MER5A DNA MER1_type 45 144 -45 2104 134 0 49 chr9 38948899 38949227 -103322217 - AluSx SINE Alu 0 312 1 264 338 0 65 chr9 38949227 38949270 -103322174 + MER5A DNA MER1_type 144 188 -1 1357 174 29 54 chr9 38949365 38949482 -103321962 + AluJo SINE Alu 5 123 -189 270 0 0 0 chr9 38949482 38949512 -103321932 + (TA)n Simple_repeat Simple_repeat 2 31 0 1357 174 29 54 chr9 38949512 38949527 -103321917 + AluJo SINE Alu 123 137 -175 770 0 11 0 chr9 38949527 38949617 -103321827 + (TCTA)n Simple_repeat Simple_repeat 3 93 0 1357 174 29 54 chr9 38949617 38949799 -103321645 + AluJo SINE Alu 137 312 0 328 264 54 139 chr9 38949825 38950212 -103321232 - L1 LINE L1 -1699 4447 4094 2003 197 32 43 chr9 38950321 38950365 -103321079 - L1ME1 LINE L1 -5 6161 6118 2184 72 21 3 chr9 38950365 38950655 -103320789 + AluY SINE Alu 1 295 -16 2003 197 32 43 chr9 38950655 38951139 -103320305 - L1ME1 LINE L1 -48 6118 5639 1032 221 62 21 chr9 38951201 38951540 -103319904 - MER74B LTR ERVL -59 563 211 297 170 0 0 chr9 38951575 38951628 -103319816 - MER74B LTR ERVL -569 53 1 1664 207 32 29 chr9 38951651 38952358 -103319086 - L1ME1 LINE L1 -547 5619 4911 1815 159 10 14 chr9 38953100 38953390 -103318054 - AluJb SINE Alu -23 289 1 411 247 51 25 chr9 38953635 38953793 -103317651 + L1MEd LINE L1 71 232 -5887 466 257 0 20 chr9 38953921 38954022 -103317422 + MER5A DNA MER1_type 4 102 -87 351 305 13 47 chr9 38954357 38954510 -103316934 - MIR SINE MIR -58 150 2 2088 120 74 86 chr9 38954636 38955069 -103316375 + MSTA LTR MaLR 1 428 0 242 297 45 27 chr9 38955524 38955635 -103315809 + MIR3 SINE MIR 88 200 -8 305 341 78 8 chr9 38956580 38956709 -103314735 - L2 LINE L2 -10 3262 3125 950 191 0 34 chr9 38956794 38956972 -103314472 + AluJ SINE Alu 1 172 -140 252 184 0 198 chr9 38956987 38957204 -103314240 + LTR38B LTR ERV1 10 183 -427 2298 85 13 3 chr9 38957531 38957836 -103313608 + AluY SINE Alu 1 308 -3 225 0 0 0 chr9 38957836 38957861 -103313583 + (CCA)n Simple_repeat Simple_repeat 1 25 0 803 166 0 14 chr9 38958026 38958165 -103313279 + AluJ SINE Alu 167 303 -9 224 295 57 19 chr9 38958854 38958959 -103312485 - L3 LINE CR1 -16 1561 1453 2303 128 12 0 chr9 38958959 38959294 -103312150 - MER47A DNA MER2_type 0 366 28 1576 151 34 34 chr9 38959439 38959730 -103311714 - AluJo SINE Alu -20 292 2 2157 123 0 3 chr9 38959740 38960042 -103311402 - AluSx SINE Alu -11 301 1 1243 346 67 43 chr9 38960581 38961541 -103309903 + ERVL LTR ERVL 1231 2213 -3551 1449 180 119 58 chr9 38961915 38962259 -103309185 + MLT1A1 LTR MaLR 1 365 0 2523 118 120 5 chr9 38962927 38963310 -103308134 - MSTA LTR MaLR 0 428 2 256 300 22 0 chr9 38964742 38964832 -103306612 + L1ME LINE L1 4 95 -5975 3054 157 6 2 chr9 38965700 38966183 -103305261 + MER31A LTR ERV1 1 485 0 346 222 0 0 chr9 38966456 38966519 -103304925 - L2 LINE L2 -10 3303 3241 189 0 0 0 chr9 38966562 38966583 -103304861 + (CAT)n Simple_repeat Simple_repeat 3 23 0 597 274 152 22 chr9 38966612 38966882 -103304562 - L3 LINE CR1 -27 1550 1246 1316 204 19 0 chr9 38967495 38967760 -103303684 + L1MA4 LINE L1 6022 6291 -9 23 0 0 0 chr9 38967799 38967822 -103303622 + AT_rich Low_complexity Low_complexity 1 23 0 183 271 0 0 chr9 38968244 38968303 -103303141 + CT-rich Low_complexity Low_complexity 4 62 0 301 341 94 13 chr9 38968360 38968659 -103302785 - L3 LINE CR1 -652 925 603 247 314 212 7 chr9 38968654 38968791 -103302653 - L2 LINE L2 0 3272 3108 * 2808 99 90 11 chr9 38968848 38969060 -103302384 - Tigger2 DNA MER2_type 0 2718 2524 1671 169 7 10 chr9 38969060 38969335 -103302109 + AluSx SINE Alu 2 276 -36 360 0 0 0 chr9 38969335 38969375 -103302069 + (TC)n Simple_repeat Simple_repeat 1 40 0 216 0 0 0 chr9 38969374 38969398 -103302046 + (CA)n Simple_repeat Simple_repeat 1 24 0 * 1671 169 7 10 chr9 38969375 38969417 -103302027 + AluSx SINE Alu 276 295 -17 2808 99 90 11 chr9 38969417 38969648 -103301796 - Tigger2 DNA MER2_type -194 2524 2240 310 353 42 32 chr9 38970948 38971138 -103300306 + L3 LINE CR1 1259 1450 -127 1541 226 95 15 chr9 38971210 38971673 -103299771 - MLT1E LTR MaLR -2 591 1 363 354 43 6 chr9 38972916 38973077 -103298367 + L3 LINE CR1 1367 1533 -44 360 0 0 0 chr9 38975898 38975938 -103295506 + (TG)n Simple_repeat Simple_repeat 2 41 0 2875 101 36 10 chr9 38975949 38976363 -103295081 - L1MA3 LINE L1 0 6305 5881 757 170 91 140 chr9 38976363 38976669 -103294775 - L1MC5 LINE L1 -135 7826 7555 3014 80 0 29 chr9 38976669 38977055 -103294389 + THE1C LTR MaLR 1 375 0 757 170 91 140 chr9 38977055 38977278 -103294166 - L1MC5 LINE L1 -406 7555 7323 885 225 52 19 chr9 38977308 38977604 -103293840 - L1MC5 LINE L1 -1090 6871 6625 287 123 82 0 chr9 38978367 38978489 -103292955 + (TA)n Simple_repeat Simple_repeat 2 133 0 340 80 80 0 chr9 38978597 38978697 -103292747 + (TA)n Simple_repeat Simple_repeat 1 108 0 21 0 0 0 chr9 38978773 38978794 -103292650 + AT_rich Low_complexity Low_complexity 1 21 0 412 310 29 23 chr9 38978848 38979019 -103292425 - L2 LINE L2 0 3313 3142 1127 259 112 40 chr9 38979051 38979261 -103292183 + HAL1 LINE L1 23 217 -2290 1917 190 87 11 chr9 38979261 38979629 -103291815 - MSTD LTR MaLR 0 396 1 1127 259 112 40 chr9 38979629 38979892 -103291552 + HAL1 LINE L1 217 530 -1977 1032 220 111 85 chr9 38979892 38980021 -103291423 + HAL1 LINE L1 1446 1570 -937 1376 211 128 21 chr9 38980021 38980356 -103291088 + MLT2D LTR ERVL 1 381 -33 354 45 0 0 chr9 38980356 38980400 -103291044 + (CA)n Simple_repeat Simple_repeat 2 45 0 1376 211 128 21 chr9 38980400 38980438 -103291006 + MLT2D LTR ERVL 381 414 0 1032 220 111 85 chr9 38980438 38980550 -103290894 + HAL1 LINE L1 1570 1678 -829 2077 119 7 7 chr9 38980550 38980835 -103290609 + AluSx SINE Alu 13 297 -15 1032 220 111 85 chr9 38980835 38981015 -103290429 + HAL1 LINE L1 1678 1879 -628 3168 158 48 79 chr9 38981469 38981657 -103289787 + L1PB4 LINE L1 5455 5647 -509 1514 119 0 0 chr9 38981657 38981859 -103289585 - AluSq SINE Alu -13 300 99 3168 158 48 79 chr9 38981859 38982381 -103289063 + L1PB4 LINE L1 5647 6143 -13 1226 217 49 48 chr9 38982491 38982971 -103288473 - MLT1E3 LTR MaLR 0 626 77 326 284 24 71 chr9 38983040 38983251 -103288193 + L1ME3 LINE L1 5961 6161 -1 1753 177 7 0 chr9 38984889 38985172 -103286272 + AluJo SINE Alu 1 285 -27 24 0 0 0 chr9 38985172 38985196 -103286248 + AT_rich Low_complexity Low_complexity 1 24 0 401 267 57 126 chr9 38987663 38987736 -103283708 + HAL1 LINE L1 844 920 -1587 2029 91 0 15 chr9 38987736 38988010 -103283434 + AluSx SINE Alu 28 297 -15 401 267 57 126 chr9 38988010 38988266 -103283178 + HAL1 LINE L1 920 1128 -1379 535 45 0 0 chr9 38988266 38988332 -103283112 - L1PA11 LINE L1 -5 6169 6104 401 267 57 126 chr9 38988332 38988511 -103282933 + HAL1 LINE L1 1128 1318 -1189 3348 110 8 6 chr9 38988520 38988994 -103282450 + L1PB1 LINE L1 5677 6151 0 319 312 48 30 chr9 38989124 38989411 -103282033 + HAL1b LINE L1 366 656 -692 349 374 0 24 chr9 38989640 38989763 -103281681 + L2 LINE L2 3153 3272 0 937 212 82 108 chr9 38989933 38990128 -103281316 - L1MC5 LINE L1 -33 7928 7729 1914 100 93 0 chr9 38990128 38990397 -103281047 - AluSg SINE Alu -15 295 2 937 212 82 108 chr9 38990397 38990451 -103280993 - L1MC5 LINE L1 -232 7729 7675 1880 162 0 3 chr9 38990451 38990747 -103280697 - AluJo SINE Alu -1 311 17 937 212 82 108 chr9 38990747 38990846 -103280598 - L1MC5 LINE L1 -286 7675 7575 2225 92 3 3 chr9 38990846 38991139 -103280305 - AluSx SINE Alu -19 293 1 2427 83 6 6 chr9 38991148 38991460 -103279984 - AluSp SINE Alu -1 312 1 937 212 82 108 chr9 38991460 38991727 -103279717 - L1MC5 LINE L1 -394 7567 7316 2342 111 0 0 chr9 38991727 38992034 -103279410 - AluSx SINE Alu 0 312 6 937 212 82 108 chr9 38992034 38992055 -103279389 - L1MC5 LINE L1 -645 7316 7296 1151 259 106 101 chr9 38992075 38992817 -103278627 - L1MC4a LINE L1 -945 6863 6113 1553 209 0 38 chr9 38992817 38993133 -103278311 + AluJb SINE Alu 1 304 -8 1151 259 106 101 chr9 38993133 38993420 -103278024 - L1MC4a LINE L1 -1695 6113 5829 209 352 172 0 chr9 38993594 38993739 -103277705 + MIR3 SINE MIR 32 201 -7 543 293 44 105 chr9 38994216 38994578 -103276866 + L2 LINE L2 2932 3271 -1 1118 248 20 106 chr9 38994584 38995092 -103276352 + L1ME3A LINE L1 5622 6085 -85 2149 111 23 13 chr9 38995127 38995433 -103276011 - AluSc SINE Alu 0 309 1 252 265 26 68 chr9 38997041 38997158 -103274286 + L3 LINE CR1 1353 1464 -113 1897 160 3 0 chr9 38997837 38998161 -103273283 + AluJo SINE Alu 1 312 0 4158 233 67 55 chr9 38998161 38999528 -103271916 + L1MDa LINE L1 1098 2481 -4059 1614 206 82 3 chr9 38999529 38999859 -103271585 - MLT1A1 LTR MaLR 0 365 10 821 176 27 0 chr9 38999867 39000074 -103271370 + L1MDa LINE L1 2479 2650 -3890 560 198 86 37 chr9 39000062 39000249 -103271195 + L1MDa LINE L1 4270 4465 -2075 * 2026 243 20 40 chr9 39000244 39000852 -103270592 + L1MDa LINE L1 4794 5389 -1151 1854 293 63 60 chr9 39000889 39001852 -103269592 + L1M2b LINE L1 14 979 -6230 9407 193 21 9 chr9 39001889 39005303 -103266141 + L1M2b LINE L1 1701 5155 -2053 804 199 31 5 chr9 39005305 39005496 -103265948 + L1M2b LINE L1 5326 5521 -1687 6060 157 26 30 chr9 39007050 39007764 -103263680 + L1MA5 LINE L1 4096 4812 -1488 2093 122 0 7 chr9 39007764 39008059 -103263385 + AluSx SINE Alu 1 293 -19 2355 106 0 0 chr9 39008067 39008370 -103263074 + AluSc SINE Alu 1 303 -6 6060 157 26 30 chr9 39008370 39008871 -103262573 + L1MA5 LINE L1 4819 5321 -979 2672 155 25 23 chr9 39008871 39009303 -103262141 + Tigger2a DNA MER2_type 1 433 -1 6060 157 26 30 chr9 39009303 39010253 -103261191 + L1MA5 LINE L1 5321 6261 -39 433 274 29 11 chr9 39010261 39010436 -103261008 + L1M2b LINE L1 6040 6217 -991 * 3807 198 30 32 chr9 39010433 39011311 -103260133 + L1MD2 LINE L1 5272 6147 -212 424 241 18 59 chr9 39011310 39011480 -103259964 + L1MD3 LINE L1 7832 7994 -1 * 951 268 43 132 chr9 39011447 39012236 -103259208 + L1ME3A LINE L1 3891 4558 -1588 2221 103 0 0 chr9 39012236 39012554 -103258890 - AluSx SINE Alu 0 318 1 951 268 43 132 chr9 39012554 39012868 -103258576 + L1ME3A LINE L1 4558 4898 -1248 846 221 98 14 chr9 39012897 39013173 -103258271 + L1ME3A LINE L1 5664 5962 -208 237 279 52 78 chr9 39013193 39013347 -103258097 + L1ME3A LINE L1 5925 6074 -96 476 264 181 0 chr9 39013467 39013622 -103257822 + L1MC4a LINE L1 5428 5610 -2198 316 184 68 48 chr9 39013624 39013727 -103257717 + L1MC4a LINE L1 5650 5754 -2054 2228 105 3 7 chr9 39013727 39014032 -103257412 + AluSx SINE Alu 1 304 -8 784 182 58 0 chr9 39014032 39014186 -103257258 + AluSg/x SINE Alu 132 294 -16 347 250 36 89 chr9 39014186 39014354 -103257090 + L1MC4a LINE L1 5747 5905 -1903 234 205 73 69 chr9 39014594 39014685 -103256759 + MIR SINE MIR 35 122 -95 186 43 0 0 chr9 39014827 39014850 -103256594 + (CTG)n Simple_repeat Simple_repeat 1 23 0 203 182 45 0 chr9 39015525 39015569 -103255875 + G-rich Low_complexity Low_complexity 4 49 0 2233 111 13 10 chr9 39016074 39016381 -103255063 - AluSx SINE Alu -4 308 1 372 364 60 6 chr9 39016415 39016764 -103254680 - L1ME4a LINE L1 -199 5922 5555 300 27 0 0 chr9 39017108 39017145 -103254299 + (CA)n Simple_repeat Simple_repeat 1 37 0 275 287 32 0 chr9 39017233 39017327 -103254117 - MIR3 SINE MIR -21 187 91 993 209 11 0 chr9 39017969 39018156 -103253288 + MER20 DNA MER1_type 31 219 0 212 331 144 0 chr9 39018452 39018591 -103252853 + MIR SINE MIR 28 186 -76 298 307 10 0 chr9 39019508 39019609 -103251835 + MIR SINE MIR 49 150 -58 2169 133 0 0 chr9 39021574 39021874 -103249570 - AluSx SINE Alu -8 304 5 425 187 33 0 chr9 39021896 39021987 -103249457 + MER103 DNA DNA 50 143 -23 2081 94 6 82 chr9 39022025 39022355 -103249089 - AluSx SINE Alu -7 305 1 437 181 0 0 chr9 39022621 39022693 -103248751 + FLAM SINE Alu 58 129 -14 388 292 95 60 chr9 39022926 39023241 -103248203 - L3 LINE CR1 -71 1506 1181 22 0 0 0 chr9 39024547 39024569 -103246875 + AT_rich Low_complexity Low_complexity 1 22 0 357 276 20 10 chr9 39024859 39024957 -103246487 + GA-rich Low_complexity Low_complexity 2 100 0 445 236 7 7 chr9 39024977 39025121 -103246323 + GA-rich Low_complexity Low_complexity 1 144 0 3185 122 32 2 chr9 39025642 39026109 -103245335 + LTR39 LTR ERV1 1 481 -302 2144 107 0 14 chr9 39026109 39026400 -103245044 + AluSx SINE Alu 1 287 -25 7816 28 0 1 chr9 39026408 39027342 -103244102 + L1PA3 LINE L1 5222 6154 -1 37 81 0 0 chr9 39027342 39027428 -103244016 + AT_rich Low_complexity Low_complexity 1 86 0 401 140 73 207 chr9 39027435 39027585 -103243859 + LTR39 LTR ERV1 460 589 -194 2343 110 0 0 chr9 39027590 39027891 -103243553 - AluSq SINE Alu -12 301 1 1535 232 114 24 chr9 39029077 39029502 -103241942 + L1MC4 LINE L1 7449 7935 -107 351 0 0 0 chr9 39029502 39029541 -103241903 + (CA)n Simple_repeat Simple_repeat 2 40 0 1535 232 114 24 chr9 39029541 39029658 -103241786 + L1MC4 LINE L1 7935 8040 -2 681 197 0 38 chr9 39029937 39030069 -103241375 + AluJo/FLAM SINE Alu 1 127 -175 1849 173 3 3 chr9 39030079 39030379 -103241065 + AluJb SINE Alu 1 300 -12 1011 175 0 27 chr9 39030379 39030551 -103240893 - AluJb SINE Alu -11 301 133 265 318 46 31 chr9 39030551 39030641 -103240803 + L1ME LINE L1 5602 5689 -432 2530 70 0 6 chr9 39030641 39030954 -103240490 + AluY SINE Alu 1 311 0 265 318 46 31 chr9 39030954 39031058 -103240386 + L1ME LINE L1 5689 5799 -322 23 33 0 0 chr9 39031224 39031254 -103240190 + AT_rich Low_complexity Low_complexity 1 30 0 1908 152 44 0 chr9 39031270 39031567 -103239877 + AluSx SINE Alu 1 310 -2 414 233 43 0 chr9 39031777 39031893 -103239551 + L1M4 LINE L1 4747 4867 -1279 295 246 65 145 chr9 39031897 39032145 -103239299 + LTR50 LTR ERVL 1 228 -567 27 0 0 0 chr9 39032277 39032304 -103239140 + AT_rich Low_complexity Low_complexity 1 27 0 207 0 0 0 chr9 39032985 39033008 -103238436 + (A)n Simple_repeat Simple_repeat 1 23 0 1131 97 0 13 chr9 39035630 39035784 -103235660 + AluSp SINE Alu 150 301 -12 1097 269 13 82 chr9 39036712 39037173 -103234271 - MLT1J LTR MaLR 0 511 83 732 133 148 7 chr9 39037174 39037309 -103234135 - MLT1A2 LTR MaLR -2 372 219 2138 113 3 0 chr9 39038127 39038440 -103233004 - AluSp SINE Alu 0 314 1 2181 69 0 4 chr9 39039866 39040127 -103231317 - AluY SINE Alu -17 294 35 858 254 83 53 chr9 39040198 39040595 -103230849 - MLT1J LTR MaLR -102 409 1 2534 148 29 12 chr9 39040748 39041167 -103230277 - MSTB LTR MaLR 0 426 1 26 50 0 0 chr9 39042247 39042287 -103229157 + AT_rich Low_complexity Low_complexity 1 40 0 1784 143 75 13 chr9 39042435 39042743 -103228701 - MER7A DNA MER2_type -1 345 21 37 0 0 0 chr9 39042959 39042996 -103228448 + AT_rich Low_complexity Low_complexity 1 37 0 2161 126 3 3 chr9 39042999 39043309 -103228135 - AluSx SINE Alu -2 310 1 804 146 26 57 chr9 39043329 39043395 -103228049 + MER53 DNA DNA 4 71 -118 2298 100 0 0 chr9 39043395 39043685 -103227759 - AluSg SINE Alu -20 290 1 804 146 26 57 chr9 39043685 39043810 -103227634 + MER53 DNA DNA 71 189 0 696 238 96 43 chr9 39044468 39044771 -103226673 + L1MC5 LINE L1 7610 7928 -33 2598 128 5 14 chr9 39044788 39045202 -103226242 + L1MB3 LINE L1 5773 6182 -1 310 43 0 0 chr9 39045406 39045452 -103225992 - L1PA4 LINE L1 0 6155 6110 1649 171 3 57 chr9 39045470 39045786 -103225658 - AluJo SINE Alu -9 303 5 190 350 40 20 chr9 39046879 39046979 -103224465 + MIR SINE MIR 8 109 -153 757 233 24 111 chr9 39046979 39047429 -103224015 - L1MC5 LINE L1 -39 7922 7512 742 255 137 26 chr9 39048813 39049107 -103222337 - L1ME4a LINE L1 -1 6120 5755 2085 125 3 3 chr9 39049107 39049410 -103222034 - AluSx SINE Alu -9 303 1 742 255 137 26 chr9 39049410 39049574 -103221870 - L1ME4a LINE L1 -366 5755 5611 775 259 203 47 chr9 39049922 39050217 -103221227 + L2 LINE L2 2248 2496 -817 2403 73 0 3 chr9 39050217 39050504 -103220940 + AluSp SINE Alu 1 286 -27 775 259 203 47 chr9 39050504 39051108 -103220336 + L2 LINE L2 2496 3313 0 2371 90 3 3 chr9 39051334 39051635 -103219809 + AluSc SINE Alu 1 301 -8 2057 129 17 7 chr9 39052319 39052621 -103218823 - AluJo SINE Alu -7 305 1 317 303 157 46 chr9 39052706 39052967 -103218477 - L3 LINE CR1 -108 1469 1180 1899 161 0 3 chr9 39053050 39053348 -103218096 + AluJb SINE Alu 1 297 -15 1460 146 28 7 chr9 39053641 39054052 -103217392 - LTR54 LTR ERV1 -5 505 1 1141 234 70 35 chr9 39054079 39054395 -103217049 - MLT1J LTR MaLR -13 498 172 2339 91 0 3 chr9 39054727 39055025 -103216419 - AluSc SINE Alu -12 297 1 2656 179 68 37 chr9 39055031 39055348 -103216096 - MER99 DNA DNA -2 826 520 633 195 132 37 chr9 39055348 39055538 -103215906 - MER63A DNA MER1_type -2 208 1 2656 179 68 37 chr9 39055538 39055836 -103215608 - MER99 DNA DNA -308 520 192 21 36 0 0 chr9 39056195 39056223 -103215221 + AT_rich Low_complexity Low_complexity 1 28 0 1600 128 9 128 chr9 39056516 39056851 -103214593 + AluJo SINE Alu 2 296 -6 366 316 0 0 chr9 39056853 39056951 -103214493 - MER99 DNA DNA -729 99 2 211 268 0 38 chr9 39057086 39057181 -103214263 + MIR SINE MIR 64 151 -62 318 221 91 0 chr9 39058006 39058083 -103213361 + LTR54 LTR ERV1 16 99 -411 525 169 78 173 chr9 39058220 39058451 -103212993 + MER57A LTR ERV1 195 403 0 180 0 0 0 chr9 39058678 39058698 -103212746 + (TTTTTG)n Simple_repeat Simple_repeat 3 22 0 455 279 52 15 chr9 39058703 39058937 -103212507 - L1ME4a LINE L1 -296 5825 5643 1641 184 91 78 chr9 39059228 39059354 -103212090 - MLT1D LTR MaLR -15 490 367 1944 67 115 7 chr9 39059354 39059623 -103211821 + AluSc SINE Alu 1 298 -11 1641 184 91 78 chr9 39059623 39059980 -103211464 - MLT1D LTR MaLR -138 367 1 216 67 0 0 chr9 39060684 39060714 -103210730 + (TG)n Simple_repeat Simple_repeat 2 31 0 2303 112 3 0 chr9 39060936 39061248 -103210196 + AluSq SINE Alu 1 313 0 264 352 16 0 chr9 39061419 39061547 -103209897 - L1MC/D LINE L1 -1976 5832 5703 2197 122 0 0 chr9 39062317 39062621 -103208823 + AluSx SINE Alu 1 304 -8 198 159 0 0 chr9 39062818 39062854 -103208590 + MIR SINE MIR 116 154 -54 2037 83 61 4 chr9 39062931 39063209 -103208235 + AluY SINE Alu 1 294 -17 271 122 17 52 chr9 39063531 39063646 -103207798 + (CA)n Simple_repeat Simple_repeat 2 112 0 428 121 27 44 chr9 39063661 39063963 -103207481 + (CA)n Simple_repeat Simple_repeat 1 296 0 454 113 16 59 chr9 39063977 39064163 -103207281 + (CA)n Simple_repeat Simple_repeat 2 179 0 364 128 16 59 chr9 39064177 39064364 -103207080 + (CA)n Simple_repeat Simple_repeat 2 180 0 398 129 24 49 chr9 39064379 39064685 -103206759 + (CA)n Simple_repeat Simple_repeat 1 298 0 233 234 0 0 chr9 39064781 39064828 -103206616 + (TGAA)n Simple_repeat Simple_repeat 1 47 0 192 152 0 0 chr9 39064850 39064883 -103206561 + (TGGA)n Simple_repeat Simple_repeat 3 35 0 1487 205 3 24 chr9 39065330 39065665 -103205779 + AluJo SINE Alu 1 329 0 374 306 104 0 chr9 39065776 39065910 -103205534 + LTR16A LTR ERVL 301 448 -2 190 304 87 0 chr9 39068831 39068923 -103202521 - MIR SINE MIR -70 192 93 375 152 0 0 chr9 39071326 39071405 -103200039 + (TGG)n Simple_repeat Simple_repeat 3 81 0 189 0 0 0 chr9 39071581 39071602 -103199842 + (CAG)n Simple_repeat Simple_repeat 1 21 0 544 209 181 6 chr9 39072011 39072188 -103199256 + MIR SINE MIR 1 208 -54 252 261 45 27 chr9 39073450 39073561 -103197883 - MIR3 SINE MIR -15 193 81 993 47 78 0 chr9 39073885 39074013 -103197431 + MER85 DNA T2_type 1 138 -1 1919 163 20 3 chr9 39074027 39074328 -103197116 + AluJb SINE Alu 1 306 -6 287 265 128 10 chr9 39075814 39076010 -103195434 + HAL1 LINE L1 1143 1361 -1146 360 64 0 0 chr9 39076012 39076059 -103195385 + (TCTA)n Simple_repeat Simple_repeat 1 47 0 1794 143 7 24 chr9 39076059 39076346 -103195098 - AluJb SINE Alu -30 282 1 4360 118 48 41 chr9 39076424 39077201 -103194243 + L1MC1 LINE L1 5552 6333 0 437 302 108 3 chr9 39077300 39077377 -103194067 + L1M4 LINE L1 3628 3696 -2450 2441 70 0 7 chr9 39077377 39077677 -103193767 - AluSc SINE Alu -11 298 1 437 302 108 3 chr9 39077677 39077894 -103193550 + L1M4 LINE L1 3696 3953 -2193 10203 101 34 31 chr9 39077896 39077969 -103193475 + Tigger1 DNA MER2_type 1 72 -2346 2135 128 0 16 chr9 39077969 39078275 -103193169 + AluSx SINE Alu 1 301 -11 10203 101 34 31 chr9 39078275 39079751 -103191693 + Tigger1 DNA MER2_type 72 1555 -863 2243 153 59 25 chr9 39079728 39079941 -103191503 + Tigger1 DNA MER2_type 2014 2247 -171 * 2176 106 0 33 chr9 39079941 39080242 -103191202 - AluSg SINE Alu -19 291 1 2243 153 59 25 chr9 39080242 39080420 -103191024 + Tigger1 DNA MER2_type 2247 2418 0 33 43 0 0 chr9 39080729 39080776 -103190668 + AT_rich Low_complexity Low_complexity 1 47 0 759 164 0 0 chr9 39080778 39080894 -103190550 + AluSq/x SINE Alu 3 118 -195 315 0 0 0 chr9 39080894 39080929 -103190515 + (TAA)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr9 39080939 39080960 -103190484 + AT_rich Low_complexity Low_complexity 1 21 0 1397 138 15 0 chr9 39081320 39081523 -103189921 - AluJo SINE Alu -23 289 84 2128 120 0 3 chr9 39082451 39082750 -103188694 + AluSx SINE Alu 1 298 -14 197 301 186 0 chr9 39083052 39083165 -103188279 - L2 LINE L2 0 3313 3180 1913 123 51 3 chr9 39083392 39083684 -103187760 + AluSx SINE Alu 2 307 -5 218 264 56 14 chr9 39083696 39083768 -103187676 - MIR SINE MIR -172 90 16 1359 176 66 7 chr9 39084338 39084639 -103186805 + MER33 DNA MER1_type 3 321 -3 366 312 80 11 chr9 39084808 39084996 -103186448 + MER20B DNA MER1_type 16 217 -2 2057 109 3 14 chr9 39085087 39085380 -103186064 - AluSx SINE Alu -12 300 11 264 332 45 45 chr9 39085906 39086105 -103185339 - L2 LINE L2 -685 2629 2431 290 292 62 7 chr9 39086126 39086270 -103185174 - L2 LINE L2 -1524 1790 1639 1801 139 77 0 chr9 39086458 39086615 -103184829 - AluJb SINE Alu -18 294 150 441 0 0 0 chr9 39086615 39086664 -103184780 + (TG)n Simple_repeat Simple_repeat 2 50 0 1801 139 77 0 chr9 39086664 39086779 -103184665 - AluJb SINE Alu -162 150 1 1631 172 12 75 chr9 39086884 39087216 -103184228 + AluJb SINE Alu 1 311 -1 495 259 135 82 chr9 39087216 39088161 -103183283 + L1M4 LINE L1 2271 3266 -2880 1684 187 0 44 chr9 39088163 39088484 -103182960 + AluJo SINE Alu 3 309 -3 1402 208 47 53 chr9 39088588 39088693 -103182751 + L1MB8 LINE L1 3108 3212 -2934 1958 140 62 0 chr9 39088693 39088985 -103182459 - AluSx SINE Alu -2 310 1 1402 208 47 53 chr9 39088985 39089385 -103182059 + L1MB8 LINE L1 3212 3610 -2536 5023 164 27 32 chr9 39089386 39089674 -103181770 + L1MB8 LINE L1 4866 5154 -1024 2517 68 0 0 chr9 39089674 39089985 -103181459 + AluY SINE Alu 1 311 0 5023 164 27 32 chr9 39089985 39090032 -103181412 + L1MB8 LINE L1 5154 5200 -978 2072 102 51 24 chr9 39090032 39090325 -103181119 + AluSg SINE Alu 1 301 -9 5023 164 27 32 chr9 39090325 39091248 -103180196 + L1MB8 LINE L1 5200 6116 -62 1879 127 33 4 chr9 39091248 39091555 -103179889 - AluSx SINE Alu 0 315 1 5023 164 27 32 chr9 39091555 39091618 -103179826 + L1MB8 LINE L1 6116 6178 0 263 304 81 25 chr9 39091634 39091795 -103179649 + L1M4 LINE L1 3369 3538 -2608 880 284 25 9 chr9 39091824 39092148 -103179296 + L1M4 LINE L1 3633 3961 -2185 324 0 0 0 chr9 39092216 39092252 -103179192 + (TG)n Simple_repeat Simple_repeat 1 36 0 21 57 0 0 chr9 39092376 39092411 -103179033 + AT_rich Low_complexity Low_complexity 1 35 0 1543 253 63 54 chr9 39092419 39092512 -103178932 + L1M4 LINE L1 3951 4042 -2104 1641 175 10 41 chr9 39092512 39092854 -103178590 + AluJb SINE Alu 1 333 0 1543 253 63 54 chr9 39092854 39092892 -103178552 + L1M4 LINE L1 4042 4078 -2068 2015 104 19 0 chr9 39092892 39093162 -103178282 + AluSx SINE Alu 22 296 -16 1543 253 63 54 chr9 39093162 39093866 -103177578 + L1M4 LINE L1 4078 4796 -1350 357 82 0 0 chr9 39094075 39094124 -103177320 + (TA)n Simple_repeat Simple_repeat 2 50 0 270 266 47 64 chr9 39094221 39094454 -103176990 - HAL1 LINE L1 -1457 1050 822 966 155 25 10 chr9 39094894 39095094 -103176350 + L1 LINE L1 4406 4608 -1538 346 257 7 79 chr9 39095565 39095717 -103175727 + L1ME LINE L1 3759 3899 -2247 832 273 76 65 chr9 39095726 39096651 -103174793 + L1ME LINE L1 4490 5440 -681 1476 212 3 7 chr9 39096651 39096934 -103174510 + AluJo SINE Alu 1 282 -30 832 273 76 65 chr9 39096934 39097304 -103174140 + L1ME LINE L1 5440 5804 -317 2133 101 14 0 chr9 39097344 39097620 -103173824 + AluSq SINE Alu 1 280 -33 267 54 0 0 chr9 39097620 39097657 -103173787 + (TC)n Simple_repeat Simple_repeat 2 38 0 240 35 0 0 chr9 39097672 39097701 -103173743 + (TG)n Simple_repeat Simple_repeat 2 30 0 300 287 35 0 chr9 39097701 39097788 -103173656 + L1MC4 LINE L1 6614 6703 -1339 216 189 0 0 chr9 39097788 39097825 -103173619 + (CATATA)n Simple_repeat Simple_repeat 2 38 0 1157 168 15 113 chr9 39097855 39098237 -103173207 + L1MD3 LINE L1 983 8046 -18 1498 260 123 52 chr9 39098251 39099416 -103172028 + L1MEc LINE L1 1064 2310 -4086 2340 90 0 7 chr9 39099428 39099729 -103171715 + AluSc SINE Alu 1 299 -10 1503 227 20 0 chr9 39099743 39100086 -103171358 + L1MEc LINE L1 2402 2751 -3464 * 3030 185 42 21 chr9 39100072 39100731 -103170713 + L1M4b LINE L1 885 1557 -5302 * 3110 201 52 16 chr9 39100730 39101760 -103169684 + L1M3 LINE L1 4573 5641 -542 2547 242 68 9 chr9 39101774 39102551 -103168893 + L1M4b LINE L1 1540 2362 -4597 216 0 0 0 chr9 39102823 39102847 -103168597 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 200 308 55 0 chr9 39102898 39102989 -103168455 + MIR SINE MIR 96 191 -71 1782 134 13 56 chr9 39103122 39103427 -103168017 - AluJb SINE Alu -16 296 5 1556 101 57 91 chr9 39104123 39104260 -103167184 + AluJo SINE Alu 1 141 -171 2263 94 13 0 chr9 39104260 39104559 -103166885 + AluSp SINE Alu 1 303 -10 1556 101 57 91 chr9 39104559 39104719 -103166725 + AluJo SINE Alu 141 288 -24 1391 274 54 4 chr9 39105022 39105486 -103165958 - Charlie4a DNA MER1_type -5 503 17 337 122 41 41 chr9 39105627 39105725 -103165719 + CT-rich Low_complexity Low_complexity 5 102 0 1937 163 3 0 chr9 39106833 39107134 -103164310 + AluJo SINE Alu 6 307 -5 669 179 32 0 chr9 39107550 39107673 -103163771 - FLAM_A SINE Alu -6 127 1 2500 78 3 0 chr9 39107907 39108214 -103163230 - AluSq SINE Alu -5 308 1 3758 159 29 15 chr9 39108335 39109063 -103162381 - L1MB7 LINE L1 -19 6165 5428 1355 141 0 0 chr9 39109066 39109264 -103162180 - AluSg/x SINE Alu 0 310 113 2730 143 14 53 chr9 39109368 39109396 -103162048 - MER34C LTR ERV1 -66 519 491 1822 143 10 27 chr9 39109396 39109697 -103161747 + AluJo SINE Alu 1 296 -16 2730 143 14 53 chr9 39109697 39110008 -103161436 - MER34C LTR ERV1 -94 491 204 2179 119 7 0 chr9 39110008 39110311 -103161133 + AluSx SINE Alu 7 311 -1 2730 143 14 53 chr9 39110311 39110475 -103160969 - MER34C LTR ERV1 -381 204 35 224 320 0 26 chr9 39110581 39110659 -103160785 - L2 LINE L2 -244 3069 2994 744 199 7 7 chr9 39110866 39111002 -103160442 + AluJo SINE Alu 2 137 -175 2371 77 7 0 chr9 39111002 39111300 -103160144 + AluSg SINE Alu 1 300 -10 2605 63 0 0 chr9 39111454 39111757 -103159687 + AluSg SINE Alu 1 303 -7 2533 143 18 10 chr9 39111903 39112296 -103159148 + MSTD LTR MaLR 1 396 0 195 42 0 0 chr9 39112781 39112805 -103158639 + (T)n Simple_repeat Simple_repeat 1 24 0 2106 96 0 18 chr9 39113648 39113929 -103157515 + AluY SINE Alu 3 278 -33 408 40 0 0 chr9 39113929 39113979 -103157465 + (CA)n Simple_repeat Simple_repeat 1 50 0 369 295 171 57 chr9 39113979 39114821 -103156623 - L2 LINE L2 -20 3252 2324 1091 102 231 5 chr9 39114826 39115012 -103156432 + MER30 DNA MER1_type 3 230 0 2424 88 0 22 chr9 39115638 39115956 -103155488 + AluSx SINE Alu 1 311 -1 2069 86 38 28 chr9 39116505 39116795 -103154649 + AluSp SINE Alu 1 293 -20 1842 247 58 50 chr9 39116822 39117495 -103153949 - L1ME3A LINE L1 -65 6105 5428 1141 190 17 91 chr9 39117491 39117776 -103153668 - L1MB8 LINE L1 -1 6177 5921 * 2500 62 3 0 chr9 39117776 39118080 -103153364 + AluY SINE Alu 1 305 -6 1141 190 17 91 chr9 39118080 39118146 -103153298 - L1MB8 LINE L1 -257 5921 5852 2146 112 7 0 chr9 39118535 39118822 -103152622 - AluSp SINE Alu -24 289 1 1187 228 49 0 chr9 39118911 39119174 -103152270 + MLT1C LTR MaLR 192 467 0 1863 147 0 27 chr9 39119703 39120003 -103151441 - AluJo SINE Alu -16 296 5 2049 109 3 40 chr9 39120456 39120616 -103150828 - AluSx SINE Alu -19 293 148 2312 102 0 0 chr9 39120616 39120909 -103150535 - AluSc SINE Alu -16 293 1 2049 109 3 40 chr9 39120909 39121052 -103150392 - AluSx SINE Alu -164 148 1 971 163 249 4 chr9 39121349 39121606 -103149838 + MER33 DNA MER1_type 1 320 -4 2054 128 30 0 chr9 39121693 39121991 -103149453 + AluSx SINE Alu 1 307 -5 2065 119 10 20 chr9 39122567 39122869 -103148575 - AluSg SINE Alu -11 299 1 1157 161 5 37 chr9 39122874 39123092 -103148352 - AluJo SINE Alu -15 297 87 2090 98 49 0 chr9 39123184 39123470 -103147974 + AluSg SINE Alu 1 300 -10 233 75 25 0 chr9 39123470 39123510 -103147934 + (TA)n Simple_repeat Simple_repeat 1 41 0 2332 89 3 0 chr9 39127279 39127571 -103143873 - AluSq SINE Alu -20 293 1 1353 204 55 4 chr9 39127690 39127964 -103143480 - AluJo SINE Alu -24 288 1 24 67 0 0 chr9 39128712 39128757 -103142687 + AT_rich Low_complexity Low_complexity 1 45 0 579 168 46 4 chr9 39128891 39129086 -103142358 + AluJ SINE Alu 1 285 -27 657 0 0 0 chr9 39129086 39129159 -103142285 + (TA)n Simple_repeat Simple_repeat 1 73 0 994 201 36 5 chr9 39129968 39130187 -103141257 + L1MB7 LINE L1 4906 5131 -1015 1114 194 123 32 chr9 39130195 39130479 -103140965 + MER2 DNA MER2_type 1 310 -35 1028 188 33 19 chr9 39130627 39130897 -103140547 + L1MB7 LINE L1 5214 5491 -693 1602 166 107 74 chr9 39130915 39131319 -103140125 + L1MB7 LINE L1 5693 6116 -68 2189 108 0 3 chr9 39131319 39131607 -103139837 - AluSx SINE Alu -25 287 1 1602 166 107 74 chr9 39131607 39131678 -103139766 + L1MB7 LINE L1 6116 6183 -1 308 290 0 0 chr9 39131817 39131886 -103139558 + MER3 DNA MER1_type 10 78 -131 21 0 0 0 chr9 39131899 39131920 -103139524 + AT_rich Low_complexity Low_complexity 1 21 0 959 220 0 6 chr9 39132303 39132471 -103138973 - FAM SINE Alu -5 170 4 21 0 0 0 chr9 39132471 39132492 -103138952 + AT_rich Low_complexity Low_complexity 1 21 0 278 232 166 50 chr9 39132503 39132684 -103138760 - L1MC5 LINE L1 -49 7912 7711 921 178 42 21 chr9 39132698 39132889 -103138555 - MER20 DNA MER1_type -24 195 1 447 226 64 25 chr9 39132889 39133093 -103138351 - L1MC5 LINE L1 -243 7718 7507 474 185 56 9 chr9 39133265 39133373 -103138071 - L1MC5 LINE L1 -727 7234 7122 226 132 0 57 chr9 39133451 39133504 -103137940 - L1MC5 LINE L1 -1005 6956 6907 1536 153 87 33 chr9 39133508 39133783 -103137661 - AluSx SINE Alu -22 290 1 4375 141 93 20 chr9 39134250 39134285 -103137159 + Tigger1 DNA MER2_type 567 598 -1820 1205 182 174 45 chr9 39134285 39134549 -103136895 + AluJb SINE Alu 5 302 0 4375 141 93 20 chr9 39134549 39135323 -103136121 + Tigger1 DNA MER2_type 598 1435 -983 2498 163 41 24 chr9 39135323 39135911 -103135533 - L1M2 LINE L1 -745 5401 4917 1752 107 137 0 chr9 39135911 39136173 -103135271 - AluSx SINE Alu -4 298 1 2498 163 41 24 chr9 39136173 39136257 -103135187 - L1M2 LINE L1 -1229 4917 4836 1155 158 96 14 chr9 39136883 39137092 -103134352 - MER30 DNA MER1_type 0 230 5 728 269 65 7 chr9 39137370 39137664 -103133780 + L1M4 LINE L1 4420 4730 -1416 606 309 59 38 chr9 39137746 39137982 -103133462 + MLT1J LTR MaLR 78 318 -193 231 231 0 39 chr9 39138014 39138066 -103133378 + MLT1J LTR MaLR 388 437 -74 1915 128 3 32 chr9 39138074 39138387 -103133057 + AluSx SINE Alu 1 304 -8 328 298 59 29 chr9 39139843 39139996 -103131448 + MIR SINE MIR 12 178 -67 180 0 0 0 chr9 39140029 39140049 -103131395 + (CAAAAA)n Simple_repeat Simple_repeat 4 23 0 1842 206 73 50 chr9 39140062 39140250 -103131194 - L1MB7 LINE L1 -6 6178 5996 1671 98 4 43 chr9 39140250 39140505 -103130939 - AluY SINE Alu -12 299 55 1842 206 73 50 chr9 39140505 39140839 -103130605 - L1MB7 LINE L1 -188 5996 5644 23 0 0 0 chr9 39141647 39141670 -103129774 + AT_rich Low_complexity Low_complexity 1 23 0 2171 129 0 0 chr9 39141902 39142205 -103129239 - AluSx SINE Alu -9 303 1 856 245 26 114 chr9 39142847 39143121 -103128323 - L2 LINE L2 -1330 1984 1766 2372 101 0 10 chr9 39143121 39143429 -103128015 + AluSx SINE Alu 1 305 -7 856 245 26 114 chr9 39143429 39143619 -103127825 - L2 LINE L2 -1548 1766 1561 2426 46 0 0 chr9 39144298 39144582 -103126862 - AluY SINE Alu -27 284 1 1316 253 75 15 chr9 39144628 39145027 -103126417 - L1M4 LINE L1 -2266 3880 3458 681 224 23 11 chr9 39145055 39145229 -103126215 + LTR41 LTR ERVL 4 179 -594 320 190 12 17 chr9 39145681 39145761 -103125683 + LTR41 LTR ERVL 705 794 -1 426 245 104 104 chr9 39145763 39146012 -103125432 + MLT1F LTR MaLR 25 273 -269 543 206 0 0 chr9 39146146 39146243 -103125201 + FLAM_A SINE Alu 20 116 -26 514 136 10 48 chr9 39146251 39146354 -103125090 - L1MB8 LINE L1 -51 6127 6029 2153 104 0 4 chr9 39146363 39146643 -103124801 + AluSx SINE Alu 9 287 -25 612 120 0 38 chr9 39146675 39146681 -103124763 + (GAAA)n Simple_repeat Simple_repeat 1 6 -122 2407 82 3 0 chr9 39146681 39146987 -103124457 + AluY SINE Alu 1 307 -4 612 120 0 38 chr9 39146987 39147113 -103124331 + (GAAA)n Simple_repeat Simple_repeat 6 128 0 1186 190 12 87 chr9 39147122 39147191 -103124253 + L1MB7 LINE L1 2557 2630 -3516 2101 126 7 7 chr9 39147191 39147501 -103123943 + AluSx SINE Alu 1 310 -2 1186 190 12 87 chr9 39147501 39147763 -103123681 + L1MB7 LINE L1 2630 2863 -3283 257 214 14 0 chr9 39147771 39147841 -103123603 - L1M4 LINE L1 -3600 2546 2476 3942 160 60 78 chr9 39147853 39148053 -103123391 + L1MB7 LINE L1 4960 5162 -1022 2102 110 3 31 chr9 39148053 39148370 -103123074 - AluSx SINE Alu 0 312 5 3942 160 60 78 chr9 39148370 39148566 -103122878 + L1MB7 LINE L1 5162 5360 -824 1953 128 20 10 chr9 39148566 39148864 -103122580 + AluJo SINE Alu 3 303 -9 270 0 0 0 chr9 39148865 39148895 -103122549 + (CA)n Simple_repeat Simple_repeat 2 31 0 3942 160 60 78 chr9 39148895 39148929 -103122515 + L1MB7 LINE L1 5360 5393 -791 2913 3 0 0 chr9 39148929 39149238 -103122206 + AluYb8 SINE Alu 1 309 -9 3942 160 60 78 chr9 39149238 39149554 -103121890 + L1MB7 LINE L1 5393 5713 -471 2059 141 3 0 chr9 39149554 39149858 -103121586 + AluSx SINE Alu 2 306 -6 3942 160 60 78 chr9 39149858 39150349 -103121095 + L1MB7 LINE L1 5713 6184 0 2463 80 0 0 chr9 39150416 39150718 -103120726 - AluY SINE Alu -9 302 1 2112 106 14 0 chr9 39150718 39151011 -103120433 - AluSx SINE Alu -15 297 1 290 115 0 0 chr9 39151011 39151063 -103120381 - AluSq SINE Alu 0 302 251 1454 109 5 15 chr9 39151063 39151265 -103120179 - AluSq SINE Alu -113 200 1 324 0 0 0 chr9 39151278 39151314 -103120130 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 291 298 0 12 chr9 39151682 39151766 -103119678 - MIR SINE MIR -57 151 69 2213 89 7 0 chr9 39152091 39152373 -103119071 - AluSp SINE Alu -29 284 1 2338 99 0 10 chr9 39152376 39152680 -103118764 - AluSg SINE Alu -9 301 1 200 183 50 17 chr9 39152784 39152844 -103118600 - L2 LINE L2 -100 3213 3152 1129 223 0 27 chr9 39152916 39153140 -103118304 + AluJo SINE Alu 1 218 -94 434 128 0 103 chr9 39153140 39153197 -103118247 + AluSq SINE Alu 84 133 -180 2500 70 3 0 chr9 39153197 39153497 -103117947 + AluSg SINE Alu 1 301 -9 434 128 0 103 chr9 39153497 39153517 -103117927 + AluSq SINE Alu 133 153 -160 3311 107 15 2 chr9 39153682 39154142 -103117302 - LTR15 LTR ERV1 -6 487 22 1412 87 0 5 chr9 39154142 39154326 -103117118 - AluSp SINE Alu -11 302 120 266 241 161 69 chr9 39154963 39155137 -103116307 + MIR SINE MIR 52 241 -21 2055 95 11 4 chr9 39156479 39156753 -103114691 + AluSq SINE Alu 1 276 -37 371 132 0 0 chr9 39156821 39156874 -103114570 - Alu SINE Alu -246 53 1 1878 121 19 55 chr9 39157489 39157796 -103113648 - AluSx SINE Alu -16 296 1 1256 167 72 5 chr9 39158156 39158377 -103113067 - MER46A DNA MER2_type 0 236 1 1740 176 0 20 chr9 39158572 39158868 -103112576 - AluJb SINE Alu -22 290 1 1957 72 0 45 chr9 39158949 39159214 -103112230 - AluY SINE Alu -58 253 1 1337 221 165 21 chr9 39159240 39159823 -103111621 - HsTC2 DNA Tc2 -60 1838 7 2283 84 0 3 chr9 39159826 39160110 -103111334 + AluSq SINE Alu 1 283 -30 255 212 0 178 chr9 39160249 39160395 -103111049 - L1ME3A LINE L1 -88 6082 5963 1711 117 64 0 chr9 39160405 39160654 -103110790 - AluSc SINE Alu -15 294 30 205 50 25 25 chr9 39161107 39161147 -103110297 + (CGCGG)n Simple_repeat Simple_repeat 3 42 0 309 301 93 66 chr9 39161724 39161907 -103109537 + MIR3 SINE MIR 6 193 -15 680 132 26 0 chr9 39162752 39162866 -103108578 - AluJo SINE Alu -1 311 195 871 170 7 0 chr9 39162866 39163007 -103108437 - AluJo SINE Alu -170 142 1 570 190 8 33 chr9 39163206 39163327 -103108117 + MER3 DNA MER1_type 10 127 -82 21 0 0 0 chr9 39163518 39163539 -103107905 + AT_rich Low_complexity Low_complexity 1 21 0 361 267 74 30 chr9 39163728 39163863 -103107581 + L2 LINE L2 1560 1700 -1614 534 263 124 57 chr9 39163909 39164896 -103106548 - L1M4 LINE L1 -1043 5103 3879 2019 110 21 14 chr9 39164896 39165187 -103106257 + AluSx SINE Alu 1 293 -19 534 263 124 57 chr9 39165187 39165577 -103105867 - L1M4 LINE L1 -2267 3879 3516 221 277 190 76 chr9 39166374 39166558 -103104886 + L2 LINE L2 3062 3266 -6 1016 113 0 0 chr9 39166787 39166920 -103104524 + AluJb SINE Alu 1 133 -179 529 247 26 47 chr9 39167821 39168011 -103103433 - L1ME3A LINE L1 -2062 5746 5561 1007 155 63 43 chr9 39168020 39168227 -103103217 - AluJb SINE Alu -17 295 85 1991 158 7 0 chr9 39168812 39169115 -103102329 + AluSx SINE Alu 1 305 -7 742 141 14 7 chr9 39169125 39169267 -103102177 + GA-rich Low_complexity Low_complexity 1 143 0 1336 102 0 0 chr9 39170233 39170409 -103101035 - AluSg/x SINE Alu -11 301 126 1169 109 36 41 chr9 39170756 39170976 -103100468 + L1MB3 LINE L1 5963 6181 -2 3044 134 39 26 chr9 39170979 39171474 -103099970 + L1MB3 LINE L1 5204 5796 -387 1825 166 3 27 chr9 39171474 39171775 -103099669 - AluSx SINE Alu -18 294 1 3044 134 39 26 chr9 39171775 39171959 -103099485 + L1MB3 LINE L1 5796 5976 -207 614 295 85 25 chr9 39171959 39172280 -103099164 + L2 LINE L2 2697 3029 -243 607 202 72 63 chr9 39172304 39172362 -103099082 + L1MB7 LINE L1 5808 5864 -320 2151 129 83 44 chr9 39172362 39172564 -103098880 + MSTB LTR MaLR 1 194 -232 2099 106 13 20 chr9 39172564 39172697 -103098747 + AluSx SINE Alu 1 133 -179 2266 106 3 0 chr9 39172697 39172989 -103098455 + AluSp SINE Alu 1 293 -20 2099 106 13 20 chr9 39172989 39173156 -103098288 + AluSx SINE Alu 133 299 -13 2151 129 83 44 chr9 39173156 39173363 -103098081 + MSTB LTR MaLR 194 426 0 607 202 72 63 chr9 39173363 39173499 -103097945 + L1MB7 LINE L1 5864 6009 -175 443 228 31 12 chr9 39173499 39173661 -103097783 - L1 LINE L1 -1626 5236 5072 5333 125 75 28 chr9 39173664 39174321 -103097123 - L1PBa LINE L1 -3508 3354 2730 2325 68 0 7 chr9 39174321 39174613 -103096831 + AluSp SINE Alu 14 303 -10 5333 125 75 28 chr9 39174613 39176649 -103094795 - L1PBa LINE L1 -4132 2730 329 2137 116 3 31 chr9 39176649 39176968 -103094476 - AluSx SINE Alu -2 310 1 5333 125 75 28 chr9 39176968 39177295 -103094149 - L1PBa LINE L1 -6533 329 19 2073 139 3 0 chr9 39177422 39177717 -103093727 - AluSx SINE Alu -16 296 1 1619 157 70 28 chr9 39177955 39178242 -103093202 - AluJb SINE Alu -13 299 1 225 0 0 0 chr9 39178535 39178560 -103092884 + (TCCA)n Simple_repeat Simple_repeat 2 26 0 548 183 183 8 chr9 39178583 39178703 -103092741 - FRAM SINE Alu -29 147 7 674 239 23 11 chr9 39178746 39178922 -103092522 - L1ME LINE L1 -453 5711 5534 1320 115 4 40 chr9 39179064 39179290 -103092154 - MER7A DNA MER2_type -3 333 116 1114 139 184 129 chr9 39179290 39179367 -103092077 + Tigger2a DNA MER2_type 1 72 -2636 1526 124 34 0 chr9 39179367 39179601 -103091843 - AluSq SINE Alu -71 242 1 1114 139 184 129 chr9 39179601 39179919 -103091525 + Tigger2a DNA MER2_type 72 418 -16 553 167 123 0 chr9 39179914 39180028 -103091416 - MER7A DNA MER2_type -218 128 3 * 856 198 13 0 chr9 39180184 39180341 -103091103 - MER5A DNA MER1_type 0 189 31 457 153 270 15 chr9 39180402 39180539 -103090905 - MER58A DNA MER1_type -5 219 48 2007 127 0 20 chr9 39180756 39181055 -103090389 + AluSq SINE Alu 1 293 -20 2419 83 0 3 chr9 39181134 39181436 -103090008 - AluSg SINE Alu -9 301 1 307 227 117 69 chr9 39181490 39181882 -103089562 - L1MC5 LINE L1 -30 7931 7521 331 264 127 31 chr9 39181928 39182220 -103089224 - L1 LINE L1 -1795 4351 4032 258 316 104 19 chr9 39183099 39183311 -103088133 - L1 LINE L1 -2362 3784 3555 2176 104 0 7 chr9 39183328 39183625 -103087819 - AluSx SINE Alu -17 295 1 1661 156 84 7 chr9 39184713 39184988 -103086456 - AluSx SINE Alu -16 296 1 381 176 0 0 chr9 39185656 39185730 -103085714 - MER116 DNA Mariner -5 75 2 21 0 0 0 chr9 39185742 39185763 -103085681 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr9 39186006 39186038 -103085406 + AT_rich Low_complexity Low_complexity 1 32 0 1994 132 0 10 chr9 39186095 39186390 -103085054 + AluJb SINE Alu 1 292 -20 2234 114 0 23 chr9 39186915 39187223 -103084221 - AluSq SINE Alu -12 301 1 392 258 132 19 chr9 39187225 39187384 -103084060 - L1MEd LINE L1 -4936 1183 1007 2385 88 0 0 chr9 39187395 39187700 -103083744 - AluSg SINE Alu -5 305 1 390 262 112 57 chr9 39188278 39188395 -103083049 + L1MB8 LINE L1 5609 5718 -460 2254 105 0 3 chr9 39188395 39188689 -103082755 + AluSq SINE Alu 1 293 -20 390 262 112 57 chr9 39188689 39188851 -103082593 + L1MB8 LINE L1 5718 5905 -273 829 154 8 117 chr9 39189061 39189308 -103082136 - AluJo SINE Alu -8 304 85 1180 76 7 0 chr9 39189317 39189462 -103081982 - AluSq/x SINE Alu -166 146 1 1020 235 28 84 chr9 39189754 39189960 -103081484 - MLT1A2 LTR MaLR -4 370 195 1847 83 38 56 chr9 39189960 39190248 -103081196 - AluSc SINE Alu -25 284 2 1020 235 28 84 chr9 39190248 39190433 -103081011 - MLT1A2 LTR MaLR -179 195 1 1588 179 21 24 chr9 39190661 39190952 -103080492 - AluJo SINE Alu -11 301 12 2362 92 0 3 chr9 39192115 39192419 -103079025 + AluSx SINE Alu 1 303 -9 24 53 0 0 chr9 39192983 39193021 -103078423 + AT_rich Low_complexity Low_complexity 1 38 0 1094 179 88 39 chr9 39193095 39193403 -103078041 + MER2 DNA MER2_type 1 323 -22 2145 128 0 0 chr9 39193641 39193947 -103077497 - AluY SINE Alu -5 306 1 2340 98 3 0 chr9 39194364 39194671 -103076773 - AluSp SINE Alu -5 308 1 298 280 100 38 chr9 39194781 39195020 -103076424 + HAL1 LINE L1 1407 1660 -847 237 211 23 98 chr9 39195634 39195672 -103075772 + L1MEd LINE L1 55 94 -6025 2320 77 7 3 chr9 39195672 39195971 -103075473 - AluSp SINE Alu -13 300 1 1597 167 34 34 chr9 39195973 39196266 -103075178 - AluJb SINE Alu -19 293 1 237 211 23 98 chr9 39196266 39196357 -103075087 + L1MEd LINE L1 95 177 -5942 266 317 56 52 chr9 39196404 39196653 -103074791 + L1MEd LINE L1 315 564 -5555 1480 163 24 27 chr9 39196737 39197032 -103074412 + MER49 LTR ERV1 1 294 -629 1262 196 61 28 chr9 39197076 39197402 -103074042 + MER4D LTR ERV1 567 903 0 346 231 179 15 chr9 39197409 39197543 -103073901 - MER5A DNA MER1_type 0 189 34 1988 121 35 0 chr9 39198679 39198961 -103072483 - AluSc SINE Alu -17 292 1 203 305 115 46 chr9 39199810 39199984 -103071460 - L2 LINE L2 -1038 2276 2091 8800 101 14 18 chr9 39200063 39200852 -103070592 + HSMAR1 DNA Mariner 1 785 -502 2390 84 7 0 chr9 39200852 39201150 -103070294 - AluSq SINE Alu -13 300 1 8800 101 14 18 chr9 39201150 39201652 -103069792 + HSMAR1 DNA Mariner 785 1287 0 338 272 83 50 chr9 39201773 39201953 -103069491 - L1 LINE L1 -1488 4658 4473 3167 99 77 41 chr9 39201973 39202280 -103069164 + MER41A LTR ERV1 1 337 -217 2205 108 0 0 chr9 39202280 39202567 -103068877 - AluSx SINE Alu -18 294 8 3167 99 77 41 chr9 39202567 39202794 -103068650 + MER41A LTR ERV1 337 554 0 458 221 123 0 chr9 39202980 39203134 -103068310 + L1ME1 LINE L1 5993 6165 -1 259 282 169 16 chr9 39203280 39203342 -103068102 + L1ME3A LINE L1 5666 5717 -453 190 0 32 32 chr9 39203342 39203373 -103068071 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 259 282 169 16 chr9 39203373 39203558 -103067886 + L1ME3A LINE L1 5717 5951 -219 24 32 0 0 chr9 39204620 39204651 -103066793 + AT_rich Low_complexity Low_complexity 1 31 0 339 238 212 42 chr9 39204886 39205075 -103066369 + MIR SINE MIR 10 230 -32 27 0 0 0 chr9 39205460 39205487 -103065957 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr9 39206211 39206232 -103065212 + AT_rich Low_complexity Low_complexity 1 21 0 354 109 18 0 chr9 39206705 39206760 -103064684 + AluJ/FLAM SINE Alu 9 64 -238 2410 53 7 3 chr9 39207084 39207384 -103064060 - AluY SINE Alu -10 301 1 1321 198 0 89 chr9 39207926 39208240 -103063204 + AluJo SINE Alu 1 286 -26 414 0 0 0 chr9 39208949 39208995 -103062449 + (TG)n Simple_repeat Simple_repeat 1 46 0 1057 207 161 102 chr9 39209021 39209466 -103061978 + MLT1E1 LTR MaLR 28 516 -138 2451 73 7 0 chr9 39209466 39209767 -103061677 + AluSc SINE Alu 1 303 -6 1057 207 161 102 chr9 39209767 39209892 -103061552 + MLT1E1 LTR MaLR 516 632 -22 227 368 21 21 chr9 39210116 39210211 -103061233 - MIR SINE MIR -152 110 16 240 204 99 84 chr9 39211202 39211344 -103060100 + L1P4 LINE L1 5677 5820 -343 354 256 37 0 chr9 39211563 39211645 -103059799 + L2 LINE L2 3186 3270 -2 304 286 48 0 chr9 39212482 39212566 -103058878 - L1MC4 LINE L1 -1339 6703 6616 1964 117 7 50 chr9 39212567 39212867 -103058577 - AluSq SINE Alu -14 299 13 23 0 0 0 chr9 39212867 39212890 -103058554 + AT_rich Low_complexity Low_complexity 1 23 0 224 280 170 10 chr9 39213554 39213654 -103057790 - L2 LINE L2 -14 3258 3143 538 224 8 30 chr9 39213755 39213889 -103057555 + FLAM_A SINE Alu 3 133 0 301 167 44 67 chr9 39214701 39214791 -103056653 - MIR3 SINE MIR -6 202 115 256 89 76 25 chr9 39214934 39215013 -103056431 + (TA)n Simple_repeat Simple_repeat 2 84 0 312 152 0 0 chr9 39216344 39216410 -103055034 + (CCCCG)n Simple_repeat Simple_repeat 5 70 0 378 227 23 8 chr9 39216671 39216803 -103054641 + T-rich Low_complexity Low_complexity 5 138 0 1382 120 8 51 chr9 39217236 39217282 -103054162 + AluSg/x SINE Alu 88 134 -178 2264 98 0 0 chr9 39217282 39217588 -103053856 + AluSx SINE Alu 1 306 0 1382 120 8 51 chr9 39217588 39217774 -103053670 + AluSg/x SINE Alu 134 311 -1 1151 156 47 5 chr9 39217831 39218042 -103053402 + MER46A DNA MER2_type 17 236 0 796 179 6 13 chr9 39218462 39218618 -103052826 + AluSg/x SINE Alu 144 298 -12 521 190 127 0 chr9 39218862 39219004 -103052440 + MIR SINE MIR 21 180 -82 2474 71 0 0 chr9 39219029 39219326 -103052118 + AluY SINE Alu 1 297 -14 465 282 89 28 chr9 39219330 39219543 -103051901 + L2 LINE L2 3074 3299 -14 2421 93 3 0 chr9 39220160 39220472 -103050972 + AluSp SINE Alu 1 313 0 1883 156 3 20 chr9 39220728 39221053 -103050391 + AluSx SINE Alu 1 312 0 1038 125 42 36 chr9 39221053 39221221 -103050223 + AluSg/x SINE Alu 134 302 -10 2909 13 0 0 chr9 39222446 39222757 -103048687 + AluY SINE Alu 1 311 0 227 259 92 54 chr9 39223530 39223724 -103047720 - MIR SINE MIR -50 212 16 1988 129 16 19 chr9 39224190 39224500 -103046944 + AluSx SINE Alu 1 309 -3 1409 96 6 0 chr9 39224595 39224773 -103046671 - AluSg SINE Alu -131 179 1 186 43 0 0 chr9 39224932 39224955 -103046489 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 2134 183 176 13 chr9 39224965 39225516 -103045928 - L1MB7 LINE L1 -23 6161 5521 440 225 96 78 chr9 39225538 39225756 -103045688 + MIR SINE MIR 29 250 -12 202 225 0 100 chr9 39225987 39226067 -103045377 + A-rich Low_complexity Low_complexity 2 73 0 1787 160 20 57 chr9 39226192 39226436 -103045008 + MLT1A1 LTR MaLR 29 281 -84 507 33 0 0 chr9 39226436 39226497 -103044947 + (TCTA)n Simple_repeat Simple_repeat 4 64 0 2099 122 7 0 chr9 39226500 39226786 -103044658 - AluSp SINE Alu -23 290 3 1787 160 20 57 chr9 39226786 39226887 -103044557 + MLT1A1 LTR MaLR 283 365 0 2175 111 10 0 chr9 39226913 39227211 -103044233 + AluY SINE Alu 1 301 -10 204 125 0 0 chr9 39227230 39227262 -103044182 + (TA)n Simple_repeat Simple_repeat 1 32 0 255 284 108 39 chr9 39227578 39227680 -103043764 - L2 LINE L2 -19 3294 3186 334 307 44 9 chr9 39227748 39227862 -103043582 - L2 LINE L2 -1 3312 3195 384 276 89 44 chr9 39227935 39228096 -103043348 - HAL1 LINE L1 -4 2503 2328 1235 206 47 38 chr9 39228096 39228282 -103043162 + MER2 DNA MER2_type 1 193 -151 2064 112 0 50 chr9 39228282 39228585 -103042859 + AluSg SINE Alu 6 293 -17 1235 206 47 38 chr9 39228585 39228738 -103042706 + MER2 DNA MER2_type 193 343 -1 384 276 89 44 chr9 39228738 39228801 -103042643 - HAL1 LINE L1 -179 2328 2269 28 0 0 26 chr9 39228977 39228998 -103042446 + AT_rich Low_complexity Low_complexity 1 22 -16 2177 91 11 3 chr9 39228998 39229283 -103042161 - AluSp SINE Alu -26 287 1 28 0 0 26 chr9 39229283 39229300 -103042144 + AT_rich Low_complexity Low_complexity 22 38 0 963 242 71 30 chr9 39229661 39229958 -103041486 - MER21B LTR ERV1 -54 809 501 1685 170 84 9 chr9 39229963 39230286 -103041158 - MER7A DNA MER2_type -1 345 1 1574 212 72 40 chr9 39230286 39230684 -103040760 - MER21B LTR ERV1 -366 497 87 505 185 0 22 chr9 39230729 39230821 -103040623 - MER21B LTR ERV1 -773 90 1 2133 130 0 3 chr9 39230912 39231212 -103040232 - AluSg SINE Alu -11 299 1 2033 77 67 27 chr9 39231287 39231584 -103039860 + AluSc SINE Alu 1 309 0 2031 78 53 47 chr9 39231849 39232208 -103039236 + L1MA3 LINE L1 5944 6304 -1 1044 163 4 2 chr9 39232238 39232491 -103038953 + AluSx SINE Alu 2 306 -4 447 261 96 25 chr9 39232502 39232701 -103038743 + L1MC/D LINE L1 5372 5584 -2224 2103 117 3 0 chr9 39232735 39233018 -103038426 + AluSc SINE Alu 1 284 -25 203 138 0 0 chr9 39233018 39233047 -103038397 + (GGGGA)n Simple_repeat Simple_repeat 1 29 0 469 243 45 69 chr9 39233629 39233876 -103037568 - L1MEd LINE L1 -4868 1251 1011 394 191 45 18 chr9 39233872 39233982 -103037462 - L1MCa LINE L1 -4898 1528 1416 * 1688 167 11 4 chr9 39234014 39234330 -103037114 - AluJo SINE Alu 0 318 1 2159 108 0 7 chr9 39234357 39234679 -103036765 - AluSp SINE Alu 0 320 1 1444 211 0 30 chr9 39234814 39235113 -103036331 + AluJo SINE Alu 1 290 -22 3335 149 49 35 chr9 39235114 39235414 -103036030 - L1MB7 LINE L1 -55 6129 5834 2182 128 3 0 chr9 39235414 39235712 -103035732 - AluSx SINE Alu -13 299 1 3335 149 49 35 chr9 39235712 39236087 -103035357 - L1MB7 LINE L1 -350 5834 5445 1344 185 27 64 chr9 39236107 39236261 -103035183 - AluJo SINE Alu -16 286 147 2341 97 3 3 chr9 39236261 39236559 -103034885 - AluSx SINE Alu -11 301 4 1344 185 27 64 chr9 39236559 39236701 -103034743 - AluJo SINE Alu -155 147 1 610 187 110 70 chr9 39236701 39236968 -103034476 + L1MC5 LINE L1 7647 7924 -37 2176 110 0 17 chr9 39237008 39237308 -103034136 - AluSx SINE Alu -17 295 1 2243 116 0 3 chr9 39237460 39237763 -103033681 - AluSx SINE Alu -10 302 1 1904 154 0 7 chr9 39237943 39238241 -103033203 - AluSx SINE Alu -16 296 1 243 91 23 0 chr9 39238433 39238477 -103032967 + Alu SINE Alu 119 163 -3 1882 108 48 0 chr9 39238627 39238895 -103032549 - AluSx SINE Alu -20 292 12 308 279 47 0 chr9 39239437 39239523 -103031921 - MIR3 SINE MIR -52 156 67 1188 137 0 0 chr9 39240175 39240336 -103031108 + AluSq SINE Alu 1 161 -152 526 86 0 0 chr9 39240336 39240406 -103031038 + Alu SINE Alu 225 294 -16 5028 67 63 0 chr9 39240692 39241339 -103030105 + LTR12 LTR ERV1 1 688 0 2361 96 7 0 chr9 39241479 39241781 -103029663 + AluSc SINE Alu 1 304 -5 2351 94 10 0 chr9 39243155 39243464 -103027980 + AluSp SINE Alu 1 312 -1 1999 124 0 24 chr9 39243480 39243794 -103027650 + AluSq SINE Alu 1 307 0 244 301 169 7 chr9 39243896 39244032 -103027412 - L2 LINE L2 -199 3073 2916 639 302 261 13 chr9 39244043 39244797 -103026647 - L2 LINE L2 -550 2764 1824 626 209 91 48 chr9 39244832 39245042 -103026402 + L2 LINE L2 2562 2780 -534 286 282 314 0 chr9 39245094 39245218 -103026226 + L2 LINE L2 2895 3057 -256 2107 122 10 0 chr9 39245227 39245521 -103025923 - AluSx SINE Alu -15 297 1 464 76 15 0 chr9 39245543 39245609 -103025835 - MER41B LTR ERV1 -88 547 481 515 260 114 18 chr9 39245623 39245842 -103025602 + L2 LINE L2 3067 3306 -7 2350 60 11 0 chr9 39246435 39246751 -103024693 + AluY SINE Alu 1 319 0 2442 77 0 13 chr9 39246836 39247135 -103024309 + AluSg SINE Alu 1 295 -15 3881 156 26 65 chr9 39247532 39247889 -103023555 + L1MB7 LINE L1 5368 5737 -447 2269 115 7 0 chr9 39247889 39248194 -103023250 - AluSp SINE Alu -6 307 1 3881 156 26 65 chr9 39248194 39248318 -103023126 + L1MB7 LINE L1 5737 5864 -320 2457 63 0 7 chr9 39248318 39248619 -103022825 + AluY SINE Alu 1 299 -12 3881 156 26 65 chr9 39248619 39248977 -103022467 + L1MB7 LINE L1 5864 6175 -9 405 296 0 15 chr9 39249022 39249154 -103022290 + L1ME3A LINE L1 6041 6170 0 250 250 10 50 chr9 39249156 39249256 -103022188 + L1MC4a LINE L1 5827 5922 -1886 2292 95 0 3 chr9 39249445 39249739 -103021705 + AluSx SINE Alu 1 293 -19 302 182 15 0 chr9 39249764 39249830 -103021614 + (CATATA)n Simple_repeat Simple_repeat 5 71 0 255 137 95 63 chr9 39249846 39249941 -103021503 + Charlie2 DNA MER1_type 2728 2825 -37 182 157 98 20 chr9 39250042 39250093 -103021351 + MIR3 SINE MIR 109 163 -45 1648 197 10 10 chr9 39250509 39250808 -103020636 + AluJo SINE Alu 1 299 -13 358 211 0 0 chr9 39250973 39251044 -103020400 - LTR33 LTR ERVL -450 71 1 2415 94 0 0 chr9 39251079 39251378 -103020066 + AluSq SINE Alu 1 299 -14 2194 123 0 0 chr9 39251381 39251673 -103019771 + AluSg SINE Alu 1 292 -18 2441 83 0 3 chr9 39251927 39252227 -103019217 + AluSp SINE Alu 1 299 -14 2031 132 0 10 chr9 39252243 39252553 -103018891 + AluJb SINE Alu 1 307 -5 322 258 57 32 chr9 39252618 39252742 -103018702 + MER5A DNA MER1_type 1 127 -62 496 175 78 0 chr9 39254096 39254199 -103017245 + FLAM_A SINE Alu 24 134 -8 715 186 16 0 chr9 39254314 39254438 -103017006 - FLAM_A SINE Alu -4 129 4 24 53 0 0 chr9 39254558 39254596 -103016848 + AT_rich Low_complexity Low_complexity 1 38 0 507 105 56 5 chr9 39254939 39255062 -103016382 - MER30 DNA MER1_type -37 193 1 1919 121 0 83 chr9 39255373 39255718 -103015726 + AluSq SINE Alu 1 319 0 797 168 0 0 chr9 39255729 39255854 -103015590 + FLAM_A SINE Alu 1 125 -8 2220 107 3 3 chr9 39255855 39256144 -103015300 + AluSq SINE Alu 1 289 -24 23 0 0 0 chr9 39256145 39256168 -103015276 + AT_rich Low_complexity Low_complexity 1 23 0 2353 90 0 7 chr9 39256256 39256555 -103014889 + AluSg1 SINE Alu 3 299 -10 2554 48 0 0 chr9 39256581 39256874 -103014570 + AluY SINE Alu 1 293 -18 825 273 52 8 chr9 39257053 39257302 -103014142 + MIR SINE MIR 2 261 -1 2205 112 0 13 chr9 39257409 39257714 -103013730 + AluSx SINE Alu 1 301 -11 206 173 0 96 chr9 39257833 39257885 -103013559 + MIR SINE MIR 216 262 0 2082 103 7 3 chr9 39257925 39258207 -103013237 - AluSx SINE Alu -29 283 1 189 0 0 0 chr9 39258326 39258347 -103013097 + (A)n Simple_repeat Simple_repeat 1 21 0 2267 100 0 7 chr9 39258356 39258657 -103012787 - AluSq SINE Alu -14 299 1 436 251 49 58 chr9 39258667 39258890 -103012554 - L1MC5 LINE L1 -491 7470 7250 2012 98 4 0 chr9 39258951 39259206 -103012238 - AluSx SINE Alu -56 256 1 22 0 0 0 chr9 39259553 39259575 -103011869 + AT_rich Low_complexity Low_complexity 1 22 0 766 130 42 99 chr9 39259585 39259777 -103011667 + L1MB4 LINE L1 6000 6180 0 2320 86 0 0 chr9 39260104 39260394 -103011050 + AluY SINE Alu 1 290 -21 1249 210 9 0 chr9 39260495 39260724 -103010720 - AluJo SINE Alu -44 268 38 213 39 0 0 chr9 39260883 39260909 -103010535 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 2123 79 47 7 chr9 39260911 39261189 -103010255 - AluSx SINE Alu -23 289 1 442 241 53 30 chr9 39261267 39261400 -103010044 - MIR3 SINE MIR -16 192 57 205 288 162 9 chr9 39261780 39261891 -103009553 + MIR3 SINE MIR 59 186 -22 182 237 0 0 chr9 39262514 39262552 -103008892 - L2 LINE L2 -22 3291 3254 2075 118 13 26 chr9 39262769 39263073 -103008371 - AluSx SINE Alu -12 300 1 2372 97 0 3 chr9 39263074 39263385 -103008059 - AluSx SINE Alu 0 312 3 1931 161 0 7 chr9 39265103 39265394 -103006050 - AluSx SINE Alu -23 289 1 1166 102 28 11 chr9 39265436 39265612 -103005832 - L1PA11 LINE L1 -4 6170 5992 340 264 139 71 chr9 39265774 39266054 -103005390 + MER102a DNA MER1_type 31 329 -1 2246 95 3 0 chr9 39267127 39267411 -103004033 - AluSc SINE Alu -23 286 2 21 36 0 0 chr9 39267418 39267446 -103003998 + AT_rich Low_complexity Low_complexity 1 28 0 2200 89 17 0 chr9 39268290 39268581 -103002863 + AluSg SINE Alu 1 296 -14 306 125 0 21 chr9 39269012 39269060 -103002384 - AluS SINE Alu -228 72 26 254 191 0 63 chr9 39269280 39269343 -103002101 - L1MC/D LINE L1 -1911 5897 5839 1966 100 63 23 chr9 39269352 39269651 -103001793 - AluSq SINE Alu -2 311 1 2150 136 0 0 chr9 39269653 39269948 -103001496 - AluSx SINE Alu -17 295 1 1949 142 48 0 chr9 39270100 39270389 -103001055 - AluSx SINE Alu -9 303 1 278 301 148 43 chr9 39270407 39270616 -103000828 - MIR SINE MIR -3 259 29 1729 67 31 5 chr9 39271380 39271603 -102999841 + MER30 DNA MER1_type 1 229 -1 1704 149 32 7 chr9 39271674 39271955 -102999489 + AluJb SINE Alu 1 288 -24 193 297 59 40 chr9 39272215 39272316 -102999128 + L2 LINE L2 3179 3281 -32 2392 70 13 0 chr9 39273069 39273371 -102998073 - AluY SINE Alu -5 306 1 2417 50 0 30 chr9 39273986 39274289 -102997155 + AluY SINE Alu 3 296 -15 262 269 43 11 chr9 39274639 39274732 -102996712 - L1MC4a LINE L1 -1639 6169 6074 296 286 32 65 chr9 39274801 39274955 -102996489 - L1MC4a LINE L1 -1871 5937 5789 390 219 73 51 chr9 39274990 39275127 -102996317 - L2 LINE L2 0 3313 3174 2335 93 3 16 chr9 39275224 39275535 -102995909 + AluSp SINE Alu 1 307 -6 347 220 47 87 chr9 39275541 39275691 -102995753 - MER65-int LTR ERV1 -3070 1801 1658 342 268 62 0 chr9 39275677 39275774 -102995670 - MER65-int LTR ERV1 -3943 993 891 * 4132 212 79 23 chr9 39275785 39276528 -102994916 + L1MD2 LINE L1 5077 5915 -444 2161 112 3 7 chr9 39276528 39276837 -102994607 + AluSq SINE Alu 1 308 0 4132 212 79 23 chr9 39276837 39277287 -102994157 + L1MD2 LINE L1 5915 6338 -21 279 0 0 0 chr9 39277549 39277580 -102993864 + (TG)n Simple_repeat Simple_repeat 2 32 0 211 111 22 22 chr9 39277584 39277629 -102993815 + (TA)n Simple_repeat Simple_repeat 2 46 0 294 185 15 15 chr9 39278024 39278089 -102993355 + THE1B-int LTR MaLR 592 656 -924 6281 76 2 24 chr9 39278089 39278914 -102992530 + THE1B-int LTR MaLR 774 1580 0 708 109 146 0 chr9 39278914 39279024 -102992420 + THE1B LTR MaLR 1 126 -238 2228 105 3 7 chr9 39279025 39279321 -102992123 - AluSx SINE Alu -7 305 11 2238 119 13 0 chr9 39279355 39279657 -102991787 - AluSx SINE Alu -6 306 1 3305 158 27 77 chr9 39279664 39279894 -102991550 - MER6 DNA MER2_type -168 697 457 2071 111 27 3 chr9 39279894 39280191 -102991253 - AluSg SINE Alu -6 304 1 3305 158 27 77 chr9 39280191 39280295 -102991149 - MER6 DNA MER2_type -408 457 349 2324 75 41 0 chr9 39280295 39280590 -102990854 - AluY SINE Alu -4 307 1 3305 158 27 77 chr9 39280590 39280947 -102990497 - MER6 DNA MER2_type -516 349 52 2010 137 0 10 chr9 39280947 39281246 -102990198 + AluJo SINE Alu 1 296 -16 3305 158 27 77 chr9 39281246 39281293 -102990151 - MER6 DNA MER2_type -813 52 4 2316 73 3 16 chr9 39281336 39281639 -102989805 - AluSx SINE Alu -13 299 1 257 154 46 0 chr9 39281642 39281714 -102989730 - L1M LINE L1 -799 5367 5306 549 219 179 7 chr9 39281962 39282113 -102989331 - MER5B DNA MER1_type -1 177 1 2326 90 3 7 chr9 39282284 39282585 -102988859 + AluSg SINE Alu 1 300 -10 2618 47 0 3 chr9 39282739 39283038 -102988406 + AluSg SINE Alu 1 298 -12 681 141 120 89 chr9 39283051 39283123 -102988321 + L1M3c LINE L1 1054 1122 -5019 1407 171 15 90 chr9 39283123 39283456 -102987988 + AluJb SINE Alu 3 310 -2 681 141 120 89 chr9 39283456 39283574 -102987870 + L1M3c LINE L1 1122 1250 -4891 312 49 0 0 chr9 39283675 39283716 -102987728 - MLT2B2 LTR ERVL -474 41 1 396 256 26 8 chr9 39283774 39283891 -102987553 + LTR16C LTR ERVL 366 484 -7 233 275 14 0 chr9 39283897 39283966 -102987478 - L1 LINE L1 -1311 4835 4766 3477 176 28 32 chr9 39283967 39284684 -102986760 - L1MD1 LINE L1 -2 6240 5527 308 284 96 23 chr9 39284685 39284966 -102986478 + LTR38B LTR ERV1 267 555 -1 21 0 0 0 chr9 39285585 39285606 -102985838 + AT_rich Low_complexity Low_complexity 1 21 0 186 43 0 0 chr9 39285903 39285926 -102985518 + (GAAAA)n Simple_repeat Simple_repeat 3 25 0 436 323 36 5 chr9 39285949 39286144 -102985300 - L2 LINE L2 -1326 1988 1788 1539 170 50 4 chr9 39286452 39286711 -102984733 + AluJo SINE Alu 25 295 -17 2321 98 3 0 chr9 39286712 39287009 -102984435 + AluSq SINE Alu 1 298 -15 415 143 14 0 chr9 39287012 39287097 -102984347 + L1M3de LINE L1 1950 2045 -4982 924 127 0 132 chr9 39287098 39287287 -102984157 + AluJo SINE Alu 3 166 -146 1483 201 112 85 chr9 39287395 39287766 -102983678 + HAL1 LINE L1 937 1297 -1210 2365 78 0 3 chr9 39287766 39288060 -102983384 + AluY SINE Alu 1 293 -18 1483 201 112 85 chr9 39288060 39288449 -102982995 + HAL1 LINE L1 1297 1717 -790 714 194 21 21 chr9 39288467 39288611 -102982833 + L1MC3 LINE L1 6718 6861 -924 732 282 28 97 chr9 39288618 39288660 -102982784 + L1M3d LINE L1 241 284 -5847 2376 95 3 0 chr9 39288660 39288956 -102982488 + AluSg SINE Alu 2 298 -12 732 282 28 97 chr9 39288956 39289345 -102982099 + L1M3d LINE L1 284 642 -5489 463 299 0 2 chr9 39289478 39289601 -102981843 + L1M3d LINE L1 899 1014 -5117 2130 161 60 23 chr9 39289702 39290099 -102981345 + MSTB LTR MaLR 15 426 0 529 216 44 33 chr9 39290099 39290280 -102981164 - L1MDa LINE L1 -4104 2436 2254 465 194 212 35 chr9 39290308 39290483 -102980961 - MER6 DNA MER2_type 0 865 -65 2047 202 87 6 chr9 39290494 39290998 -102980446 - L1MDa LINE L1 -4358 2182 1638 3029 194 47 11 chr9 39291067 39291679 -102979765 - L1MDa LINE L1 -5889 651 18 2413 103 0 0 chr9 39294322 39294633 -102976811 - AluSx SINE Alu -1 311 1 2408 81 3 13 chr9 39294713 39295020 -102976424 - AluSx SINE Alu -8 304 1 1503 222 16 63 chr9 39295020 39295529 -102975915 - L1M2c LINE L1 -4918 2250 1766 292 348 208 0 chr9 39295869 39296047 -102975397 - L1M2c LINE L1 -6592 576 362 922 102 0 0 chr9 39296049 39296167 -102975277 - AluSq/x SINE Alu -194 118 1 1577 127 30 45 chr9 39296250 39296517 -102974927 - Tigger3(Golem) DNA MER2_type -1 3028 2766 442 186 0 0 chr9 39296519 39296589 -102974855 + AluJ/FLAM SINE Alu 2 71 -241 309 257 58 43 chr9 39296718 39296932 -102974512 + L1MDa LINE L1 1533 1754 -4786 2013 136 0 10 chr9 39297404 39297705 -102973739 + AluSx SINE Alu 5 302 -10 368 247 172 11 chr9 39297967 39298141 -102973303 + MLT1J LTR MaLR 304 505 -6 575 279 176 66 chr9 39298794 39299520 -102971924 + L1MDa LINE L1 2528 3351 -3189 2052 102 3 32 chr9 39299520 39299805 -102971639 + AluSc SINE Alu 1 277 -32 575 279 176 66 chr9 39299805 39299877 -102971567 + L1MDa LINE L1 3351 3414 -3126 274 274 64 34 chr9 39299911 39300132 -102971312 + MER46C DNA MER2_type 68 331 -7 530 263 110 54 chr9 39300255 39300681 -102970763 + L1MDa LINE L1 4261 4710 -1830 240 275 17 25 chr9 39300698 39300818 -102970626 + L1MDa LINE L1 4884 5002 -1538 23432 49 2 3 chr9 39301363 39304211 -102967233 + L1P LINE L1 56 2900 -3246 822 190 35 0 chr9 39304311 39304485 -102966959 + L1MD1 LINE L1 6063 6242 0 21 36 0 0 chr9 39305064 39305092 -102966352 + AT_rich Low_complexity Low_complexity 1 28 0 193 348 11 11 chr9 39305353 39305445 -102965999 - L2 LINE L2 0 3313 3222 323 348 139 4 chr9 39305672 39306032 -102965412 - L2 LINE L2 -191 3081 2671 1721 125 4 29 chr9 39306040 39306319 -102965125 + AluSq SINE Alu 42 313 0 2355 102 0 3 chr9 39306322 39306625 -102964819 + AluSx SINE Alu 1 302 -10 396 270 212 17 chr9 39308915 39309208 -102962236 - L1MC4 LINE L1 -1003 7039 6690 774 247 199 11 chr9 39309391 39309662 -102961782 - MER77 LTR ERV1 -7 598 277 228 200 125 25 chr9 39309807 39309887 -102961557 - MER77 LTR ERV1 -465 140 53 790 224 51 23 chr9 39310679 39310893 -102960551 - LTR16B LTR ERVL -1 463 244 441 226 36 0 chr9 39311013 39311197 -102960247 - L1ME3A LINE L1 0 6170 5950 555 286 141 18 chr9 39311336 39311619 -102959825 - L1ME3A LINE L1 -406 5764 5447 265 219 109 47 chr9 39311633 39311761 -102959683 - L1ME3A LINE L1 -773 5389 5254 271 263 161 0 chr9 39311813 39311931 -102959513 - MIR3 SINE MIR -65 143 7 1303 227 56 43 chr9 39312166 39312562 -102958882 + MLT1C LTR MaLR 59 459 -8 213 280 90 20 chr9 39313252 39313352 -102958092 + MIR3 SINE MIR 4 110 -98 * 249 277 232 0 chr9 39313337 39313449 -102957995 + MIR SINE MIR 119 256 -6 6189 241 20 20 chr9 39313687 39316019 -102955425 + HERVH LTR ERV1 1918 4857 -2899 407 322 8 0 chr9 39318230 39318351 -102953093 + MIR SINE MIR 117 238 -24 2080 110 23 0 chr9 39318550 39318849 -102952595 + AluSg SINE Alu 1 306 -4 1735 126 46 0 chr9 39318941 39319226 -102952218 - AluSx SINE Alu -14 298 1 2097 87 0 14 chr9 39319334 39319620 -102951824 - AluSq SINE Alu -9 304 23 2150 91 3 7 chr9 39319856 39320152 -102951292 + AluSg1 SINE Alu 1 295 -14 1503 161 9 52 chr9 39320208 39320354 -102951090 + AluJb SINE Alu 1 152 -160 2273 71 3 7 chr9 39320354 39320662 -102950782 + AluY SINE Alu 1 307 -4 1503 161 9 52 chr9 39320662 39320839 -102950605 + AluJb SINE Alu 152 310 -2 1850 78 112 4 chr9 39320969 39321238 -102950206 + AluYa8 SINE Alu 3 300 -10 22 0 0 0 chr9 39321324 39321346 -102950098 + AT_rich Low_complexity Low_complexity 1 22 0 2263 86 3 0 chr9 39321350 39321652 -102949792 + AluSp SINE Alu 1 303 -10 740 158 0 25 chr9 39322629 39322749 -102948695 + FLAM_C SINE Alu 1 117 -26 2098 129 0 0 chr9 39322790 39323093 -102948351 - AluSx SINE Alu -9 303 1 2115 123 7 0 chr9 39323354 39323664 -102947780 - AluSx SINE Alu 0 312 1 2333 98 0 0 chr9 39323817 39324124 -102947320 - AluSx SINE Alu 0 312 6 21 0 0 0 chr9 39324453 39324474 -102946970 + AT_rich Low_complexity Low_complexity 1 21 0 2270 85 3 0 chr9 39324872 39325165 -102946279 - AluSp SINE Alu -17 296 3 2406 70 0 0 chr9 39325168 39325467 -102945977 - AluSx SINE Alu -13 299 1 635 346 21 0 chr9 39325713 39325901 -102945543 - MER91A DNA MER1_type 0 196 5 2244 84 3 0 chr9 39325919 39326215 -102945229 + AluSq SINE Alu 1 297 -16 317 231 124 25 chr9 39326906 39327027 -102944417 - MER5A DNA MER1_type -1 188 56 579 293 61 56 chr9 39327523 39327699 -102943745 - L1ME3A LINE L1 -218 5952 5778 2336 52 7 10 chr9 39327699 39328005 -102943439 + AluY SINE Alu 1 305 -6 579 293 61 56 chr9 39328005 39328368 -102943076 - L1ME3A LINE L1 -392 5778 5410 382 200 23 2 chr9 39329770 39329867 -102941577 + MIR SINE MIR 39 136 -72 43 35 0 0 chr9 39330207 39330264 -102941180 + GC_rich Low_complexity Low_complexity 1 57 0 252 137 0 0 chr9 39330313 39330364 -102941080 + (CGG)n Simple_repeat Simple_repeat 3 53 0 351 232 23 28 chr9 39330388 39330565 -102940879 + (CGG)n Simple_repeat Simple_repeat 3 178 0 283 267 53 13 chr9 39331654 39331729 -102939715 - L2 LINE L2 -52 3220 3143 440 331 159 33 chr9 39332357 39332576 -102938868 - L2 LINE L2 -438 2876 2686 2064 148 79 57 chr9 39332576 39332631 -102938813 + MSTC LTR MaLR 1 53 -375 2215 78 0 0 chr9 39332631 39332945 -102938499 + AluSx SINE Alu 1 314 0 2064 148 79 57 chr9 39332945 39333307 -102938137 + MSTC LTR MaLR 53 428 0 440 331 159 33 chr9 39333307 39333507 -102937937 - L2 LINE L2 -628 2686 2404 2221 67 3 3 chr9 39333734 39334049 -102937395 + AluSp SINE Alu 1 315 0 375 110 22 88 chr9 39334049 39334140 -102937304 - L1MB4 LINE L1 -8 6172 6088 1085 117 0 53 chr9 39334140 39334328 -102937116 + AluSg/x SINE Alu 130 307 -2 1549 139 43 25 chr9 39334337 39334617 -102936827 - L1MB4 LINE L1 -83 6097 5813 1881 144 0 22 chr9 39334633 39334953 -102936491 - AluSp SINE Alu 0 313 1 1419 139 19 56 chr9 39334956 39335223 -102936221 - L1MB4 LINE L1 -512 5668 5412 2264 42 0 14 chr9 39335352 39335661 -102935783 + AluY SINE Alu 2 306 0 257 182 0 0 chr9 39336068 39336112 -102935332 - L1ME LINE L1 -460 5661 5618 25 51 0 0 chr9 39336149 39336188 -102935256 + AT_rich Low_complexity Low_complexity 1 39 0 1935 143 7 0 chr9 39336361 39336662 -102934782 + AluSx SINE Alu 1 303 -9 320 0 25 0 chr9 39337072 39337112 -102934332 + (TG)n Simple_repeat Simple_repeat 2 42 0 758 261 38 11 chr9 39337276 39337537 -102933907 + L1MC5 LINE L1 6961 7228 -733 403 317 43 26 chr9 39337556 39337786 -102933658 + L2 LINE L2 1782 2015 -1299 858 210 88 93 chr9 39337794 39338113 -102933331 - MLT1H1 LTR MaLR -4 551 233 4598 101 39 49 chr9 39338113 39338887 -102932557 + MER4E LTR ERV1 1 766 0 858 210 88 93 chr9 39338887 39338963 -102932481 - MLT1H1 LTR MaLR -322 233 158 1943 89 33 36 chr9 39339099 39339260 -102932184 - AluY SINE Alu -8 303 142 2329 78 3 0 chr9 39339260 39339556 -102931888 - AluSp SINE Alu -16 297 1 1943 89 33 36 chr9 39339556 39339698 -102931746 - AluY SINE Alu -169 142 1 802 159 0 29 chr9 39339746 39339884 -102931560 - AluJo SINE Alu -177 135 2 1973 90 61 0 chr9 39339913 39340191 -102931253 + AluSp SINE Alu 1 295 -18 1991 143 0 0 chr9 39340554 39340861 -102930583 + AluSx SINE Alu 1 307 -5 500 315 153 18 chr9 39340868 39341201 -102930243 - MLT1K LTR MaLR -74 514 137 2133 84 7 13 chr9 39341267 39341566 -102929878 - AluSx SINE Alu -15 297 1 2128 103 3 7 chr9 39341573 39341873 -102929571 - AluSx SINE Alu -12 300 2 256 254 18 91 chr9 39341910 39342020 -102929424 + L2 LINE L2 3152 3253 -19 2320 174 28 13 chr9 39342782 39343242 -102928202 - MLT1C LTR MaLR 0 467 1 400 238 20 20 chr9 39343618 39343719 -102927725 + MIR SINE MIR 102 202 -60 206 78 59 20 chr9 39343723 39343774 -102927670 + (TA)n Simple_repeat Simple_repeat 1 53 0 2223 108 0 0 chr9 39343922 39344228 -102927216 + AluSx SINE Alu 1 306 -6 1661 148 3 18 chr9 39344778 39344924 -102926520 - AluSx SINE Alu -32 280 138 2313 67 3 0 chr9 39344924 39345221 -102926223 - AluY SINE Alu -12 299 2 1661 148 3 18 chr9 39345221 39345358 -102926086 - AluSx SINE Alu -174 138 1 1186 225 20 49 chr9 39345521 39345607 -102925837 - L1ME3 LINE L1 -38 6124 6037 2236 82 0 38 chr9 39345607 39345925 -102925519 + AluSp SINE Alu 1 306 -7 1186 225 20 49 chr9 39345925 39346287 -102925157 - L1ME3 LINE L1 -125 6037 5514 923 184 0 0 chr9 39346289 39346447 -102924997 + FRAM SINE Alu 1 158 -18 371 197 0 0 chr9 39346448 39346519 -102924925 - L1ME3 LINE L1 -637 5525 5455 2321 82 3 0 chr9 39347473 39347776 -102923668 - AluSp SINE Alu -9 304 1 2134 92 3 32 chr9 39347840 39348154 -102923290 - AluSx SINE Alu -7 305 1 235 305 122 23 chr9 39348336 39348467 -102922977 + MIR3 SINE MIR 3 146 -62 244 293 181 0 chr9 39348492 39348608 -102922836 - MIR SINE MIR -56 206 70 211 292 28 14 chr9 39348670 39348742 -102922702 - L2 LINE L2 0 3313 3241 2196 84 7 7 chr9 39348815 39349113 -102922331 + AluSx SINE Alu 2 299 -13 1898 146 7 0 chr9 39349146 39349441 -102922003 - AluY SINE Alu -14 297 1 2369 52 16 0 chr9 39349736 39350041 -102921403 - AluY SINE Alu -1 310 1 2189 103 0 6 chr9 39350060 39350372 -102921072 - AluSx SINE Alu -1 311 2 216 152 0 0 chr9 39350708 39350741 -102920703 - MER5B DNA MER1_type -3 175 143 1076 201 92 22 chr9 39350774 39351047 -102920397 + L1ME3 LINE L1 5804 6095 -67 284 332 36 67 chr9 39351626 39351819 -102919625 + L3 LINE CR1 1156 1342 -235 578 135 22 0 chr9 39351840 39351956 -102919488 + AluSg/x SINE Alu 189 306 0 180 260 55 14 chr9 39352378 39352451 -102918993 - MIR SINE MIR -48 214 139 2015 116 13 3 chr9 39352584 39352886 -102918558 - AluSg SINE Alu -5 305 1 335 270 11 34 chr9 39352906 39352995 -102918449 + L2 LINE L2 3186 3272 0 1865 133 7 0 chr9 39353099 39353392 -102918052 - AluSx SINE Alu -17 295 1 255 310 14 0 chr9 39353580 39353651 -102917793 + CT-rich Low_complexity Low_complexity 1 72 0 188 317 0 0 chr9 39353703 39353744 -102917700 - L2 LINE L2 -91 3181 3141 520 218 68 38 chr9 39354046 39354179 -102917265 - MIR3 SINE MIR -7 201 65 2259 99 0 0 chr9 39354242 39354544 -102916900 - AluSc SINE Alu -7 302 1 610 119 8 10 chr9 39354710 39354971 -102916473 + AluSx SINE Alu 1 309 -3 2294 79 3 13 chr9 39354981 39355285 -102916159 + AluSp SINE Alu 1 301 -12 353 274 32 11 chr9 39355285 39355373 -102916071 + L1MC4 LINE L1 6612 6704 -1338 352 220 44 55 chr9 39355294 39355385 -102916059 - L1MC4 LINE L1 -1339 6703 6614 * 338 86 76 19 chr9 39355386 39355491 -102915953 + (TA)n Simple_repeat Simple_repeat 1 111 0 355 228 71 86 chr9 39355495 39355724 -102915720 + L1MC4 LINE L1 1948 6989 -1333 1815 156 0 7 chr9 39355724 39356019 -102915425 + AluJb SINE Alu 1 293 -19 241 178 0 0 chr9 39356052 39356097 -102915347 - MER113 DNA MER1_type? -473 48 4 1180 147 6 0 chr9 39356151 39356321 -102915123 + FAM SINE Alu 1 171 -4 2384 62 3 16 chr9 39356554 39356861 -102914583 - AluSp SINE Alu -9 304 2 319 194 15 0 chr9 39356962 39357038 -102914406 + MIR SINE MIR 45 121 -87 279 288 0 0 chr9 39357088 39357161 -102914283 + GA-rich Low_complexity Low_complexity 1 73 0 479 331 36 57 chr9 39357439 39357687 -102913757 + L2 LINE L2 3028 3270 -2 255 347 54 20 chr9 39357719 39357866 -102913578 + L3 LINE CR1 1178 1329 -248 1158 148 72 10 chr9 39357869 39358078 -102913366 + AluSg/x SINE Alu 82 303 -9 325 317 42 33 chr9 39358092 39358212 -102913232 + MER91A DNA MER1_type 69 189 -7 * 426 270 68 7 chr9 39358207 39358355 -102913089 + MIR SINE MIR 35 191 -71 1268 151 0 148 chr9 39358362 39358484 -102912960 + AluJo SINE Alu 1 139 -173 2447 47 0 0 chr9 39358484 39358784 -102912660 + AluY SINE Alu 1 300 -11 1268 151 0 148 chr9 39358784 39358816 -102912628 + AluJo SINE Alu 139 174 -138 1542 173 39 3 chr9 39358816 39359099 -102912345 - AluJb SINE Alu -19 293 1 2148 108 0 0 chr9 39359103 39359398 -102912046 - AluSx SINE Alu -17 295 1 1268 151 0 148 chr9 39359398 39359569 -102911875 + AluJo SINE Alu 177 283 -29 2158 78 0 3 chr9 39359653 39359967 -102911477 - AluSp SINE Alu 0 313 1 206 204 0 20 chr9 39360273 39360322 -102911122 + MIR3 SINE MIR 150 197 -11 2400 67 0 6 chr9 39360576 39360891 -102910553 - AluSp SINE Alu 0 313 1 836 179 0 73 chr9 39360894 39361073 -102910371 - AluJo/FRAM SINE Alu 0 302 137 1320 123 27 69 chr9 39361076 39361336 -102910108 - AluSx SINE Alu -2 310 62 2161 98 16 0 chr9 39361350 39361655 -102909789 - AluSg SINE Alu 0 310 1 834 114 99 0 chr9 39361655 39361786 -102909658 - AluSq/x SINE Alu -169 144 1 2131 82 0 41 chr9 39361939 39362255 -102909189 + AluSc SINE Alu 1 303 -6 1887 117 14 7 chr9 39362282 39362565 -102908879 + AluSx SINE Alu 1 285 -27 351 0 0 0 chr9 39362565 39362604 -102908840 + (CA)n Simple_repeat Simple_repeat 2 40 0 327 130 0 0 chr9 39362710 39362764 -102908680 + (CCCCCT)n Simple_repeat Simple_repeat 6 59 0 1625 157 29 4 chr9 39362764 39363045 -102908399 - AluSx SINE Alu -10 302 15 979 103 34 0 chr9 39363078 39363255 -102908189 - AluSg/x SINE Alu 0 313 132 2129 114 0 0 chr9 39363255 39363552 -102907892 - AluSx SINE Alu -9 303 7 264 268 202 16 chr9 39363582 39363765 -102907679 + MER102a DNA MER1_type 87 303 -27 563 261 34 79 chr9 39364461 39364624 -102906820 + L1MA10 LINE L1 5959 6128 -201 1843 149 0 42 chr9 39364624 39364771 -102906673 + AluJb SINE Alu 1 130 -172 1765 126 49 14 chr9 39364771 39364906 -102906538 + AluSx SINE Alu 1 130 -182 2240 103 0 0 chr9 39364906 39365208 -102906236 + AluSc SINE Alu 1 302 -7 1765 126 49 14 chr9 39365208 39365357 -102906087 + AluSx SINE Alu 130 295 -17 1843 149 0 42 chr9 39365357 39365518 -102905926 + AluJb SINE Alu 130 296 -6 563 261 34 79 chr9 39365518 39365570 -102905874 + L1MA10 LINE L1 6128 6324 -5 233 86 0 0 chr9 39365541 39365576 -102905868 + L1MA9 LINE L1 6278 6312 0 * 787 230 117 60 chr9 39365590 39365779 -102905665 + Charlie7 DNA MER1_type 1807 1984 -628 2397 84 0 23 chr9 39365779 39366089 -102905355 - AluY SINE Alu -8 303 1 2260 118 0 16 chr9 39366091 39366266 -102905178 - AluSx SINE Alu -4 308 139 2426 81 3 10 chr9 39366266 39366573 -102904871 - AluSq SINE Alu -8 305 1 2260 118 0 16 chr9 39366573 39366710 -102904734 - AluSx SINE Alu -173 139 1 787 230 117 60 chr9 39366710 39366952 -102904492 + Charlie7 DNA MER1_type 1984 2266 -346 1294 147 0 0 chr9 39366970 39367154 -102904290 + AluSg/x SINE Alu 116 299 -13 38 75 0 0 chr9 39367277 39367357 -102904087 + AT_rich Low_complexity Low_complexity 1 80 0 2254 92 0 27 chr9 39367370 39367708 -102903736 - AluSp SINE Alu 0 330 1 2054 84 29 4 chr9 39367712 39368045 -102903399 - AluSc SINE Alu 0 340 1 568 236 150 7 chr9 39368047 39368187 -102903257 - AluJo SINE Alu -6 296 137 1168 177 0 56 chr9 39368241 39368473 -102902971 - AluJo SINE Alu -92 220 2 271 302 0 0 chr9 39368907 39368970 -102902474 + L2 LINE L2 3169 3231 -41 258 248 128 9 chr9 39369045 39369154 -102902290 + LTR67 LTR ERVL 436 557 0 2404 74 0 14 chr9 39369209 39369505 -102901939 - AluSq SINE Alu -21 292 1 378 280 34 80 chr9 39369682 39369983 -102901461 + L1M4 LINE L1 2248 3102 -3044 789 135 0 57 chr9 39370122 39370263 -102901181 - AluJo SINE Alu -169 133 1 2503 71 10 0 chr9 39370277 39370585 -102900859 - AluSp SINE Alu -2 311 1 1878 143 11 0 chr9 39370587 39370867 -102900577 - AluJo SINE Alu -19 293 11 1667 130 8 50 chr9 39371170 39371431 -102900013 - AluSx SINE Alu -14 298 49 1977 117 19 49 chr9 39371637 39371773 -102899671 + AluSx SINE Alu 1 139 -173 2477 100 0 0 chr9 39371773 39372083 -102899361 + AluSx SINE Alu 1 310 -2 1977 117 19 49 chr9 39372083 39372253 -102899191 + AluSx SINE Alu 139 298 -14 1137 143 6 0 chr9 39372253 39372428 -102899016 + AluSg/x SINE Alu 134 309 -3 2193 82 14 4 chr9 39372433 39372739 -102898705 + AluSc SINE Alu 1 309 0 2010 148 0 14 chr9 39372878 39373169 -102898275 - AluSx SINE Alu -25 287 1 291 241 111 9 chr9 39373209 39373317 -102898127 - MLT1J2 LTR MaLR -38 412 294 271 138 50 125 chr9 39373405 39373485 -102897959 - MLT2C1 LTR ERVL -212 185 112 1397 118 5 0 chr9 39373587 39373773 -102897671 + AluSp SINE Alu 112 298 -15 4179 92 4 0 chr9 39373875 39374427 -102897017 - MER41A LTR ERV1 0 554 1 2037 131 0 0 chr9 39374480 39374770 -102896674 - AluSx SINE Alu -22 290 1 1397 148 32 0 chr9 39374856 39375073 -102896371 + AluSg/x SINE Alu 73 296 -16 2186 119 6 6 chr9 39375075 39375386 -102896058 + AluSq SINE Alu 1 311 -2 2109 146 8 26 chr9 39375391 39375768 -102895676 - MER41B LTR ERV1 -136 499 130 2342 104 0 3 chr9 39375834 39376141 -102895303 - AluSg SINE Alu -4 306 1 343 90 124 22 chr9 39376142 39376231 -102895213 - L1M LINE L1 -2414 5394 5297 2359 56 0 14 chr9 39376235 39376544 -102894900 - AluY SINE Alu 0 305 1 2447 74 0 0 chr9 39376544 39376840 -102894604 - AluY SINE Alu -12 299 4 2035 208 73 40 chr9 39377009 39377528 -102893916 + MLT2B3 LTR ERVL 1 536 -18 985 124 0 96 chr9 39377530 39377708 -102893736 - AluSg/x SINE Alu -15 295 135 566 150 63 0 chr9 39377709 39377772 -102893672 + L1MD1 LINE L1 6107 6165 -77 1961 164 0 7 chr9 39377772 39378101 -102893343 - AluJb SINE Alu 0 312 1 566 150 63 0 chr9 39378101 39378164 -102893280 + L1MD1 LINE L1 6165 6241 -1 384 323 140 0 chr9 39378230 39378394 -102893050 - L1ME4a LINE L1 -94 6027 5841 389 184 149 0 chr9 39378396 39378483 -102892961 + MER53 DNA DNA 1 100 -89 2185 117 10 0 chr9 39378651 39378941 -102892503 - AluSg SINE Alu -11 299 7 1995 115 3 21 chr9 39378941 39379228 -102892216 - AluSx SINE Alu -30 282 1 1917 131 21 7 chr9 39379234 39379524 -102891920 - AluSx SINE Alu -18 294 1 25 31 0 0 chr9 39379645 39379677 -102891767 + AT_rich Low_complexity Low_complexity 1 32 0 2419 89 3 0 chr9 39379686 39379988 -102891456 + AluSp SINE Alu 1 303 -10 861 210 0 25 chr9 39379988 39380145 -102891299 - FRAM SINE Alu -27 149 1 269 234 109 34 chr9 39380145 39380292 -102891152 + MIR SINE MIR 103 261 -1 1242 176 38 86 chr9 39380362 39380675 -102890769 - AluJo SINE Alu -3 299 2 2388 78 0 33 chr9 39380679 39380985 -102890459 - AluY SINE Alu -15 296 1 2254 116 3 3 chr9 39380989 39381291 -102890153 - AluSx SINE Alu -10 302 1 288 259 111 28 chr9 39382134 39382242 -102889202 + L2 LINE L2 3197 3313 0 2067 114 11 4 chr9 39382384 39382697 -102888747 + AluSx SINE Alu 1 315 0 2146 109 41 0 chr9 39382720 39383013 -102888431 + AluSg SINE Alu 1 305 -5 2121 99 14 0 chr9 39383055 39383337 -102888107 - AluSp SINE Alu -14 299 14 6621 120 17 10 chr9 39383346 39383972 -102887472 + Tigger1 DNA MER2_type 218 857 -1561 2307 75 3 36 chr9 39383972 39384280 -102887164 + AluSp SINE Alu 1 298 -15 6621 120 17 10 chr9 39384280 39384692 -102886752 + Tigger1 DNA MER2_type 857 1264 -1154 824 230 0 0 chr9 39384693 39384865 -102886579 - FRAM SINE Alu 0 169 1 5911 122 24 14 chr9 39384865 39385205 -102886239 + Tigger1 DNA MER2_type 1248 1583 -835 2514 67 0 3 chr9 39385205 39385505 -102885939 + AluY SINE Alu 1 299 -12 5911 122 24 14 chr9 39385505 39386108 -102885336 + Tigger1 DNA MER2_type 1583 2200 -218 369 145 0 0 chr9 39386108 39386170 -102885274 + MER57A LTR ERV1 1 62 -341 514 101 0 22 chr9 39386185 39386274 -102885170 + (TTCCC)n Simple_repeat Simple_repeat 3 89 0 1985 129 6 32 chr9 39386291 39386602 -102884842 - AluSx SINE Alu -9 303 1 1370 186 11 74 chr9 39386602 39386968 -102884476 + MER57A LTR ERV1 54 396 -7 1323 80 23 6 chr9 39386969 39387144 -102884300 + AluJo SINE Alu 1 178 -134 232 252 210 28 chr9 39387144 39387358 -102884086 - Charlie2 DNA MER1_type -2583 279 27 29 28 0 0 chr9 39387509 39387545 -102883899 + GC_rich Low_complexity Low_complexity 1 36 0 381 322 42 0 chr9 39387792 39387935 -102883509 + MIR SINE MIR 29 177 -85 2413 76 0 3 chr9 39388199 39388501 -102882943 - AluSq SINE Alu -12 301 1 2049 106 0 64 chr9 39388997 39389326 -102882118 + AluSx SINE Alu 1 308 -4 2368 87 7 3 chr9 39389549 39389849 -102881595 + AluSg1 SINE Alu 1 301 -8 200 194 0 0 chr9 39390277 39390313 -102881131 + GA-rich Low_complexity Low_complexity 4 39 0 2206 113 0 3 chr9 39391225 39391526 -102879918 - AluSx SINE Alu -12 300 1 510 57 14 14 chr9 39391927 39391997 -102879447 + Alu SINE Alu 2 71 -247 2127 120 0 17 chr9 39392192 39392484 -102878960 - AluSx SINE Alu -25 287 1 741 275 77 62 chr9 39392586 39393055 -102878389 + MLT1K LTR MaLR 1 476 0 589 198 85 28 chr9 39393068 39393245 -102878199 + MLT1G3 LTR MaLR 7 193 -402 817 219 227 0 chr9 39393256 39393494 -102877950 + MLT1G3 LTR MaLR 144 435 -95 1107 119 0 13 chr9 39393494 39393645 -102877799 - AluSg/x SINE Alu -82 228 80 327 127 0 32 chr9 39393665 39393728 -102877716 + MLT1G3 LTR MaLR 481 541 -1 2050 138 3 10 chr9 39393787 39394099 -102877345 + AluSx SINE Alu 1 310 -2 2224 134 0 0 chr9 39394833 39395131 -102876313 - AluSx SINE Alu -12 300 3 429 193 0 0 chr9 39395136 39395219 -102876225 - L1ME2 LINE L1 -7 6157 6075 1978 120 47 97 chr9 39395222 39395321 -102876123 + THE1B LTR MaLR 1 103 -261 2351 94 0 3 chr9 39395321 39395618 -102875826 - AluSc SINE Alu -13 296 1 1978 120 47 97 chr9 39395618 39395684 -102875760 + THE1B LTR MaLR 103 171 -193 2219 89 3 33 chr9 39395684 39395987 -102875457 - AluY SINE Alu -17 294 1 1978 120 47 97 chr9 39395987 39396203 -102875241 + THE1B LTR MaLR 171 364 0 9941 81 78 34 chr9 39396203 39396633 -102874811 + THE1B-int LTR MaLR 1 410 -1170 2096 161 3 0 chr9 39396633 39396944 -102874500 - AluSx SINE Alu 0 312 1 9941 81 78 34 chr9 39396944 39396959 -102874485 + THE1B-int LTR MaLR 410 423 -1157 2161 125 10 0 chr9 39396959 39397255 -102874189 - AluSx SINE Alu -13 299 1 9941 81 78 34 chr9 39397255 39398321 -102873123 + THE1B-int LTR MaLR 423 1580 0 668 109 146 0 chr9 39398321 39398431 -102873013 + THE1B LTR MaLR 1 126 -238 2219 104 3 10 chr9 39398432 39398729 -102872715 - AluSx SINE Alu -7 305 11 2283 116 13 0 chr9 39398763 39399065 -102872379 - AluSx SINE Alu -6 306 1 3110 157 27 77 chr9 39399072 39399302 -102872142 - MER6 DNA MER2_type -168 697 457 2095 111 27 3 chr9 39399302 39399599 -102871845 - AluSg SINE Alu -6 304 1 3110 157 27 77 chr9 39399599 39399703 -102871741 - MER6 DNA MER2_type -408 457 349 2314 78 41 0 chr9 39399703 39399998 -102871446 - AluY SINE Alu -4 307 1 3110 157 27 77 chr9 39399998 39400355 -102871089 - MER6 DNA MER2_type -516 349 52 2034 137 0 10 chr9 39400355 39400654 -102870790 + AluJo SINE Alu 1 296 -16 3110 157 27 77 chr9 39400654 39400701 -102870743 - MER6 DNA MER2_type -813 52 4 2469 63 0 16 chr9 39400744 39401047 -102870397 - AluY SINE Alu -13 298 1 244 154 46 0 chr9 39401050 39401122 -102870322 - L1M LINE L1 -780 5384 5306 533 225 179 7 chr9 39401370 39401521 -102869923 - MER5B DNA MER1_type -1 177 1 2262 109 0 10 chr9 39401692 39402003 -102869441 + AluSg SINE Alu 1 308 -2 1101 200 55 65 chr9 39402280 39402590 -102868854 + MER58B DNA MER1_type 1 307 -34 727 130 19 0 chr9 39402602 39402710 -102868734 - AluJb SINE Alu -201 111 2 2218 104 7 7 chr9 39402970 39403268 -102868176 - AluSp SINE Alu -15 298 1 5505 46 0 25 chr9 39403326 39403456 -102867988 + L1PA5 LINE L1 5480 5612 -542 2514 63 0 3 chr9 39403456 39403755 -102867689 + AluY SINE Alu 1 298 -13 5505 46 0 25 chr9 39403755 39404314 -102867130 + L1PA5 LINE L1 5612 6152 -2 906 261 0 0 chr9 39404546 39404726 -102866718 + MER5A DNA MER1_type 4 183 -6 2136 116 7 10 chr9 39404825 39404959 -102866485 + AluSx SINE Alu 1 134 -178 2513 42 3 13 chr9 39404959 39405268 -102866176 + AluY SINE Alu 1 306 -5 2136 116 7 10 chr9 39405268 39405434 -102866010 + AluSx SINE Alu 134 300 -12 974 151 0 0 chr9 39405443 39405608 -102865836 + AluSg/x SINE Alu 142 306 0 457 69 0 0 chr9 39405613 39405671 -102865773 + Alu SINE Alu 2 59 -250 407 131 0 0 chr9 39406367 39406428 -102865016 - AluSc SINE Alu -15 294 234 2312 117 0 0 chr9 39406463 39406772 -102864672 - AluSg SINE Alu -1 309 1 1067 112 0 0 chr9 39406774 39406917 -102864527 - FRAM SINE Alu -16 160 18 2352 92 0 0 chr9 39407122 39407415 -102864029 + AluSc SINE Alu 1 293 -16 473 210 90 0 chr9 39407483 39407583 -102863861 + MER33 DNA MER1_type 1 109 -215 2409 97 3 0 chr9 39407583 39407893 -102863551 - AluSp SINE Alu -2 311 1 714 131 0 0 chr9 39408541 39408640 -102862804 + AluY SINE Alu 2 100 -211 2152 77 14 11 chr9 39408641 39408927 -102862517 + AluY SINE Alu 24 310 -1 2353 105 3 6 chr9 39408937 39409251 -102862193 + AluSp SINE Alu 1 313 0 359 92 118 144 chr9 39409251 39409281 -102862163 + MER33 DNA MER1_type 133 162 -2423 1432 194 61 22 chr9 39409281 39409559 -102861885 + AluJo SINE Alu 2 290 -22 359 92 118 144 chr9 39409559 39409681 -102861763 + MER33 DNA MER1_type 162 281 -43 828 107 0 0 chr9 39409681 39409793 -102861651 + AluSg/x SINE Alu 195 306 -3 271 146 21 0 chr9 39409793 39409841 -102861603 + MER33 DNA MER1_type 315 363 0 2169 114 14 0 chr9 39410121 39410418 -102861026 - AluSx SINE Alu -5 307 7 970 234 40 63 chr9 39410428 39410778 -102860666 - MER20B DNA MER1_type -283 500 159 648 199 23 34 chr9 39410837 39411013 -102860431 - L1MD2 LINE L1 -11 6348 6175 514 261 13 26 chr9 39411013 39411166 -102860278 - L1MD2 LINE L1 -144 6215 6065 807 241 5 0 chr9 39411182 39411373 -102860071 + L1PBa LINE L1 6 197 -6666 * 5313 123 31 40 chr9 39411370 39412301 -102859143 + L1PBa LINE L1 1392 2315 -4548 2302 112 3 7 chr9 39412301 39412606 -102858838 + AluSx SINE Alu 1 304 -8 5313 123 31 40 chr9 39412606 39412665 -102858779 + L1PBa LINE L1 2315 2373 -4490 2358 89 3 0 chr9 39412666 39412958 -102858486 - AluSp SINE Alu -20 293 1 630 111 0 0 chr9 39412982 39413081 -102858363 - AluSp/q SINE Alu 0 313 215 1668 201 32 50 chr9 39413082 39413226 -102858218 - L1MD2 LINE L1 -469 5890 5745 1748 181 10 7 chr9 39413226 39413519 -102857925 + AluJb SINE Alu 1 294 -18 1668 201 32 50 chr9 39413519 39413684 -102857760 - L1MD2 LINE L1 -614 5745 5589 2487 93 0 0 chr9 39413684 39413994 -102857450 + AluSg SINE Alu 1 310 0 1668 201 32 50 chr9 39413994 39414121 -102857323 - L1MD2 LINE L1 -770 5589 5461 225 329 14 0 chr9 39414129 39414202 -102857242 - MER20B DNA MER1_type -708 75 2 717 269 6 6 chr9 39414209 39414384 -102857060 - MER5B DNA MER1_type -3 175 1 2074 122 4 0 chr9 39414458 39414729 -102856715 + AluSg SINE Alu 1 272 -38 2168 134 0 0 chr9 39415033 39415331 -102856113 + AluSx SINE Alu 3 300 -12 401 322 29 6 chr9 39415331 39415491 -102855953 + MIR SINE MIR 37 202 -60 2078 117 7 27 chr9 39415639 39415939 -102855505 + AluSx SINE Alu 1 294 -18 1945 128 29 4 chr9 39415939 39416220 -102855224 + AluSq SINE Alu 1 288 -25 2479 49 0 49 chr9 39416229 39416543 -102854901 + AluY SINE Alu 1 300 -11 183 42 0 0 chr9 39416543 39416567 -102854877 + (CA)n Simple_repeat Simple_repeat 2 25 0 2479 49 0 49 chr9 39416567 39416579 -102854865 + AluY SINE Alu 300 311 0 217 0 0 0 chr9 39416601 39416625 -102854819 + (TTTA)n Simple_repeat Simple_repeat 1 180 0 821 154 0 0 chr9 39416625 39416743 -102854701 - FLAM_C SINE Alu -1 141 1 275 235 113 69 chr9 39416764 39416857 -102854587 - MER5A DNA MER1_type -6 183 69 1962 134 20 13 chr9 39416857 39417019 -102854425 - AluJb SINE Alu -11 301 135 2223 94 14 10 chr9 39417019 39417316 -102854128 - AluSg SINE Alu -12 298 1 1962 134 20 13 chr9 39417316 39417452 -102853992 - AluJb SINE Alu -177 135 1 275 235 113 69 chr9 39417452 39417516 -102853928 - MER5A DNA MER1_type -120 69 9 1150 250 68 62 chr9 39417528 39417766 -102853678 - L1MC5 LINE L1 -90 7871 7636 2474 84 0 0 chr9 39417766 39418077 -102853367 - AluY SINE Alu 0 311 1 1150 250 68 62 chr9 39418077 39418182 -102853262 - L1MC5 LINE L1 -325 7636 7533 2169 113 30 0 chr9 39418182 39418482 -102852962 - AluSg SINE Alu -1 309 1 1150 250 68 62 chr9 39418482 39418754 -102852690 - L1MC5 LINE L1 -428 7533 7251 1978 123 0 24 chr9 39418996 39419325 -102852119 - AluSx SINE Alu 0 322 1 1021 153 59 64 chr9 39419336 39419538 -102851906 - AluJb SINE Alu -23 289 89 594 190 91 0 chr9 39419560 39419681 -102851763 + FLAM_C SINE Alu 1 132 -1 1139 99 76 0 chr9 39419694 39419866 -102851578 + AluSp SINE Alu 3 187 -126 457 95 0 0 chr9 39419868 39419931 -102851513 + AluSp SINE Alu 55 117 -196 496 139 0 0 chr9 39419931 39420003 -102851441 + AluSc SINE Alu 176 247 -62 1174 153 10 24 chr9 39420004 39420213 -102851231 + AluSg/x SINE Alu 83 288 -22 21 36 0 0 chr9 39420216 39420244 -102851200 + AT_rich Low_complexity Low_complexity 1 28 0 845 189 13 13 chr9 39420251 39420410 -102851034 + FRAM SINE Alu 1 159 -17 2375 112 0 0 chr9 39420730 39421042 -102850402 - AluSx SINE Alu 0 312 1 1297 121 5 5 chr9 39421052 39421242 -102850202 - AluSq SINE Alu -3 310 121 1017 138 24 0 chr9 39421242 39421409 -102850035 - AluSg/x SINE Alu -10 302 132 290 25 0 25 chr9 39421409 39421449 -102849995 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1458 107 9 37 chr9 39421449 39421665 -102849779 - AluSq SINE Alu -29 284 75 1838 143 3 17 chr9 39423019 39423320 -102848124 + AluSx SINE Alu 1 297 -15 1121 167 4 66 chr9 39423343 39423436 -102848008 - AluJo SINE Alu -99 213 116 2333 85 7 10 chr9 39423436 39423742 -102847702 - AluSp SINE Alu -8 305 1 1121 167 4 66 chr9 39423742 39423875 -102847569 - AluJo SINE Alu -196 116 1 251 221 86 71 chr9 39423940 39424080 -102847364 - L1 LINE L1 -1093 5053 4912 2162 95 0 27 chr9 39424644 39424798 -102846646 - AluSg SINE Alu -24 286 129 255 31 0 0 chr9 39424798 39424830 -102846614 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 2328 78 3 0 chr9 39424833 39425116 -102846328 - AluSp SINE Alu -29 284 1 2162 95 0 27 chr9 39425116 39425251 -102846193 - AluSg SINE Alu -183 127 1 556 243 54 14 chr9 39425274 39425422 -102846022 + L2 LINE L2 3160 3313 0 21 57 0 0 chr9 39425649 39425684 -102845760 + AT_rich Low_complexity Low_complexity 1 35 0 1996 120 65 0 chr9 39425825 39426117 -102845327 - AluY SINE Alu 0 311 1 2241 97 7 0 chr9 39426117 39426407 -102845037 - AluSq SINE Alu -21 292 1 22 0 0 0 chr9 39426414 39426436 -102845008 + AT_rich Low_complexity Low_complexity 1 22 0 234 175 0 0 chr9 39426438 39426478 -102844966 - MER57A LTR ERV1 -68 335 296 497 223 141 71 chr9 39426479 39426519 -102844925 - L1M4 LINE L1 -757 5389 5353 2305 97 0 3 chr9 39426519 39426817 -102844627 - AluSg SINE Alu -13 297 1 497 223 141 71 chr9 39426817 39426993 -102844451 - L1M4 LINE L1 -793 5353 5191 587 142 150 0 chr9 39426993 39427106 -102844338 - FLAM_A SINE Alu -3 130 1 497 223 141 71 chr9 39427106 39427336 -102844108 - L1M4 LINE L1 -955 5191 4911 248 227 0 0 chr9 39427694 39427738 -102843706 - L2 LINE L2 -511 2803 2760 2545 49 10 13 chr9 39427751 39428055 -102843389 - AluY SINE Alu -6 305 3 595 227 57 74 chr9 39428069 39428298 -102843146 - L2 LINE L2 -535 2779 2555 338 191 79 95 chr9 39428337 39428463 -102842981 - L1ME3 LINE L1 -2 6160 6037 723 238 103 5 chr9 39428499 39428713 -102842731 - L2 LINE L2 -775 2539 2305 2574 54 0 0 chr9 39428765 39429062 -102842382 - AluY SINE Alu -14 297 1 24 0 0 0 chr9 39429338 39429362 -102842082 + AT_rich Low_complexity Low_complexity 1 24 0 2706 39 0 0 chr9 39429785 39430094 -102841350 - AluY SINE Alu -2 309 1 2283 83 0 49 chr9 39430096 39430422 -102841022 - AluY SINE Alu -1 310 1 1599 204 7 3 chr9 39430509 39430808 -102840636 - AluJo SINE Alu -12 300 1 326 287 25 25 chr9 39430880 39431002 -102840442 - L3 LINE CR1 -111 1466 1345 2329 116 3 0 chr9 39431085 39431396 -102840048 - AluSx SINE Alu 0 312 1 1804 170 3 7 chr9 39431444 39431733 -102839711 + AluJo SINE Alu 1 288 -24 782 206 55 47 chr9 39431750 39431848 -102839596 - Charlie2 DNA MER1_type -677 2185 2089 1876 159 3 7 chr9 39431848 39432149 -102839295 + AluJb SINE Alu 1 300 -12 782 206 55 47 chr9 39432149 39432303 -102839141 - Charlie2 DNA MER1_type -773 2089 1931 2174 66 48 4 chr9 39432644 39432938 -102838506 - AluY SINE Alu 0 306 1 2198 113 0 0 chr9 39433103 39433395 -102838049 - AluSg SINE Alu -9 301 10 1127 56 126 0 chr9 39433410 39433553 -102837891 - AluSp SINE Alu -19 294 134 1839 107 50 33 chr9 39433553 39433852 -102837592 - AluSg SINE Alu -2 308 5 2064 88 34 44 chr9 39433863 39434159 -102837285 - AluSp SINE Alu -20 293 1 2338 91 3 0 chr9 39434172 39434468 -102836976 - AluSp SINE Alu -16 297 1 301 185 49 25 chr9 39434576 39434657 -102836787 - L1MC4 LINE L1 0 8042 7960 235 337 143 10 chr9 39434665 39434861 -102836583 - L3 LINE CR1 -459 1118 897 2352 65 7 3 chr9 39434944 39435236 -102836208 - AluY SINE Alu -18 293 1 2413 80 3 0 chr9 39435710 39436009 -102835435 - AluY SINE Alu -11 300 1 1666 192 32 21 chr9 39436028 39436367 -102835077 - MLT1C LTR MaLR 0 467 125 1628 168 0 53 chr9 39436598 39436902 -102834542 + AluJo SINE Alu 16 303 -9 1970 151 0 3 chr9 39437080 39437378 -102834066 + AluJb SINE Alu 1 297 -15 1713 150 42 24 chr9 39437438 39437725 -102833719 + AluJo SINE Alu 1 292 -20 734 179 0 22 chr9 39437803 39437937 -102833507 - AluJo SINE Alu -177 135 5 2219 115 3 10 chr9 39437953 39438266 -102833178 - AluSx SINE Alu -1 311 1 1016 181 63 82 chr9 39438585 39438888 -102832556 - L1ME2 LINE L1 -9 6155 5859 227 236 55 91 chr9 39438912 39439022 -102832422 - L1ME2 LINE L1 -1934 5874 5769 2048 180 20 8 chr9 39439038 39439393 -102832051 + MLT1A1 LTR MaLR 7 365 0 425 179 45 134 chr9 39439393 39439459 -102831985 - L1ME2 LINE L1 -2070 5738 5668 267 31 0 0 chr9 39439459 39439491 -102831953 + (TTG)n Simple_repeat Simple_repeat 2 33 0 2099 63 71 4 chr9 39439493 39439761 -102831683 - AluSg SINE Alu -24 286 1 425 179 45 134 chr9 39439761 39439870 -102831574 - L1ME2 LINE L1 -2141 5667 5576 1561 127 0 0 chr9 39440714 39440934 -102830510 - AluSx SINE Alu -10 300 81 2425 62 0 3 chr9 39440935 39441225 -102830219 - AluY SINE Alu -22 289 1 596 160 0 0 chr9 39441226 39441320 -102830124 - AluSx SINE Alu -217 95 2 1290 127 6 6 chr9 39441395 39441576 -102829868 - AluJb SINE Alu -11 301 121 2019 156 0 0 chr9 39441598 39441905 -102829539 - AluSx SINE Alu -5 307 1 2275 42 0 8 chr9 39442082 39442346 -102829098 - AluY SINE Alu -49 262 1 2420 96 3 0 chr9 39442363 39442675 -102828769 - AluSp SINE Alu 0 313 1 676 197 7 22 chr9 39442788 39442925 -102828519 - AluJo SINE Alu -176 136 2 2405 89 0 19 chr9 39444802 39445117 -102826327 + AluSx SINE Alu 1 309 -3 245 278 90 38 chr9 39445294 39445427 -102826017 - L2 LINE L2 0 3272 3133 2042 100 52 0 chr9 39445874 39446169 -102825275 - AluSx SINE Alu 0 309 1 2373 74 0 7 chr9 39446177 39446474 -102824970 - AluY SINE Alu -16 295 1 2313 217 39 25 chr9 39446672 39447284 -102824160 - L1MC4 LINE L1 0 8042 7422 4137 139 6 3 chr9 39447348 39447996 -102823448 - L1MB2 LINE L1 -2 6169 5520 2335 104 10 0 chr9 39448000 39448298 -102823146 + AluSg SINE Alu 1 301 -9 21 0 0 0 chr9 39448350 39448371 -102823073 + AT_rich Low_complexity Low_complexity 1 21 0 2395 90 3 0 chr9 39448510 39448809 -102822635 - AluSp SINE Alu -13 300 1 240 206 110 0 chr9 39448859 39448932 -102822512 - MIR SINE MIR -73 135 55 238 311 37 75 chr9 39449141 39449302 -102822142 - MER5A DNA MER1_type -29 160 6 1769 160 0 7 chr9 39449381 39449656 -102821788 - AluJo SINE Alu -11 301 29 2244 99 3 0 chr9 39449904 39450217 -102821227 - AluSp SINE Alu 0 316 3 1389 92 0 92 chr9 39450219 39450448 -102820996 - AluSx SINE Alu -3 309 102 852 78 0 0 chr9 39450500 39450603 -102820841 - AluSx SINE Alu -210 103 1 2106 132 3 0 chr9 39450604 39450893 -102820551 - AluSx SINE Alu -22 290 1 381 131 0 0 chr9 39450897 39450958 -102820486 - AluSp/q SINE Alu -1 302 242 1112 140 18 12 chr9 39450958 39451129 -102820315 - AluSx SINE Alu -130 182 11 1959 145 0 10 chr9 39451169 39451459 -102819985 - AluSx SINE Alu -22 290 4 249 138 0 46 chr9 39451740 39451805 -102819639 + (TTTC)n Simple_repeat Simple_repeat 2 63 0 684 170 0 0 chr9 39451816 39451922 -102819522 + AluSg/x SINE Alu 196 301 -11 601 194 29 0 chr9 39452208 39452383 -102819061 + (TA)n Simple_repeat Simple_repeat 1 180 0 552 191 35 0 chr9 39452395 39452568 -102818876 + (TA)n Simple_repeat Simple_repeat 1 179 0 256 225 100 0 chr9 39452581 39452661 -102818783 + L1MC4 LINE L1 6614 6701 -1341 280 92 53 13 chr9 39452673 39452749 -102818695 + (TA)n Simple_repeat Simple_repeat 2 80 0 2247 101 0 0 chr9 39452749 39453035 -102818409 - AluSx SINE Alu -26 286 1 379 283 109 33 chr9 39453264 39453448 -102817996 + MIR3 SINE MIR 2 199 -9 562 202 142 87 chr9 39453673 39453824 -102817620 + L1ME3A LINE L1 5904 6045 -125 1783 130 20 68 chr9 39453824 39453949 -102817495 + MER44D DNA MER2_type 1 130 -2361 2640 49 7 0 chr9 39453949 39454254 -102817190 + AluY SINE Alu 1 307 -4 1783 130 20 68 chr9 39454254 39454482 -102816962 + MER44D DNA MER2_type 130 607 -2 562 202 142 87 chr9 39454482 39454533 -102816911 + L1ME3A LINE L1 6045 6092 -78 2488 70 0 3 chr9 39454533 39454833 -102816611 - AluSp SINE Alu -14 299 1 562 202 142 87 chr9 39454833 39454882 -102816562 + L1ME3A LINE L1 6092 6170 0 1003 153 110 3 chr9 39455041 39455249 -102816195 + L1MB7 LINE L1 5953 6183 0 1870 156 16 29 chr9 39455388 39455702 -102815742 - AluJb SINE Alu -2 310 1 290 343 15 7 chr9 39455927 39456064 -102815380 - L2 LINE L2 -219 3053 2916 1345 155 49 9 chr9 39456875 39457101 -102814343 + MER46A DNA MER2_type 2 236 0 335 234 75 11 chr9 39457423 39457517 -102813927 + MER5B DNA MER1_type 7 106 -72 636 179 55 0 chr9 39457544 39457689 -102813755 + MIR SINE MIR 70 222 -40 1980 132 4 0 chr9 39457703 39458021 -102813423 - AluSg SINE Alu 0 319 1 2183 133 3 0 chr9 39458036 39458344 -102813100 - AluSx SINE Alu -2 310 2 1960 102 15 4 chr9 39458349 39458615 -102812829 - AluSx SINE Alu -25 287 19 311 237 151 69 chr9 39458627 39458872 -102812572 - L1M4 LINE L1 -2391 3755 3491 569 263 74 71 chr9 39458882 39459226 -102812218 + L2 LINE L2 2699 3045 -268 218 233 0 0 chr9 39459230 39459273 -102812171 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 1138 261 63 55 chr9 39459301 39460049 -102811395 - L2 LINE L2 -15 3298 2535 2117 115 7 0 chr9 39460050 39460345 -102811099 - AluSx SINE Alu -15 297 1 6160 63 13 42 chr9 39460381 39461244 -102810200 - SVA Other Other 0 1386 549 580 93 12 81 chr9 39461257 39461429 -102810015 - SVA Other Other -592 794 635 2759 88 38 90 chr9 39461458 39461958 -102809486 - SVA Other Other -520 866 393 417 227 31 10 chr9 39462123 39462220 -102809224 - L1ME1 LINE L1 -22 6144 6046 276 194 0 0 chr9 39462221 39462283 -102809161 - L2 LINE L2 -771 2543 2482 2269 113 3 0 chr9 39462337 39462638 -102808806 - AluSx SINE Alu -10 302 1 21 0 0 0 chr9 39462728 39462749 -102808695 + AT_rich Low_complexity Low_complexity 1 21 0 1234 236 137 34 chr9 39462774 39463189 -102808255 - L1MC4a LINE L1 -1865 5943 5486 1981 147 43 0 chr9 39463270 39463569 -102807875 - AluJo SINE Alu 0 312 1 1142 220 155 16 chr9 39463715 39463793 -102807651 - Charlie7 DNA MER1_type -1831 781 715 1745 180 14 10 chr9 39463793 39464088 -102807356 + AluJo SINE Alu 1 296 -16 2095 116 37 0 chr9 39464088 39464382 -102807062 + AluSx SINE Alu 5 309 -3 1142 220 155 16 chr9 39464382 39464729 -102806715 - Charlie7 DNA MER1_type -1896 716 296 385 174 51 61 chr9 39464764 39464862 -102806582 - Charlie7 DNA MER1_type -2429 183 87 2359 100 3 3 chr9 39464909 39465208 -102806236 - AluSx SINE Alu -13 299 1 698 247 12 6 chr9 39465962 39466128 -102805316 - MIR SINE MIR -95 167 1 184 316 0 41 chr9 39466350 39466448 -102804996 + MIR3 SINE MIR 114 207 -1 * 254 238 65 53 chr9 39466440 39466489 -102804955 - L3 LINE CR1 -752 825 778 2438 87 0 3 chr9 39466489 39466798 -102804646 - AluSg SINE Alu -2 308 1 254 238 65 53 chr9 39466798 39466937 -102804507 - L3 LINE CR1 -799 778 636 2265 114 0 19 chr9 39466938 39467254 -102804190 + AluSg SINE Alu 1 310 0 560 238 16 0 chr9 39467418 39467540 -102803904 - MIR SINE MIR -110 152 29 1000 218 38 0 chr9 39468976 39469187 -102802257 - MER20 DNA MER1_type 0 219 1 227 233 12 58 chr9 39469197 39469283 -102802161 + MIR SINE MIR 91 172 -90 427 252 9 9 chr9 39469917 39470028 -102801416 - MIR SINE MIR -6 256 146 1440 90 0 0 chr9 39470030 39470207 -102801237 - AluSg/x SINE Alu -9 303 127 531 258 0 8 chr9 39470207 39470331 -102801113 - MIR SINE MIR -111 151 29 253 267 27 0 chr9 39470337 39470412 -102801032 - MIR SINE MIR -133 129 53 330 267 23 0 chr9 39470932 39471018 -102800426 - MLT1C LTR MaLR 0 467 380 1869 117 94 0 chr9 39471598 39471863 -102799581 + AluSx SINE Alu 11 300 -12 4649 82 29 29 chr9 39472003 39472625 -102798819 + PABL_A LTR ERV1 1 625 -35 2396 93 3 3 chr9 39472625 39472936 -102798508 + AluSq SINE Alu 1 311 -2 4649 82 29 29 chr9 39472936 39472973 -102798471 + PABL_A LTR ERV1 624 660 0 324 0 0 0 chr9 39473003 39473039 -102798405 + (CA)n Simple_repeat Simple_repeat 2 37 0 2344 86 3 7 chr9 39473474 39473776 -102797668 - AluSp SINE Alu -12 301 1 2046 98 70 3 chr9 39473847 39474132 -102797312 - AluSq SINE Alu -9 304 1 2468 76 0 0 chr9 39474376 39474667 -102796777 - AluSc SINE Alu -18 291 1 2265 115 0 10 chr9 39474801 39475114 -102796330 - AluSg SINE Alu 0 310 1 2386 96 0 0 chr9 39475793 39476094 -102795350 - AluSx SINE Alu -11 301 1 198 0 0 0 chr9 39476592 39476614 -102794830 + (ATTG)n Simple_repeat Simple_repeat 3 24 0 1861 153 0 21 chr9 39476615 39476903 -102794541 - AluSx SINE Alu -30 282 1 2146 110 0 23 chr9 39476910 39477211 -102794233 - AluSx SINE Alu -9 303 10 2132 123 0 26 chr9 39477213 39477515 -102793929 - AluSx SINE Alu -18 294 1 22 0 0 0 chr9 39477522 39477544 -102793900 + AT_rich Low_complexity Low_complexity 1 22 0 850 216 6 6 chr9 39477544 39477706 -102793738 - AluJ SINE Alu -31 281 120 896 147 0 0 chr9 39477782 39477911 -102793533 - AluJ SINE Alu -183 129 1 1078 179 16 0 chr9 39478005 39478189 -102793255 - MER5A DNA MER1_type 0 189 3 311 181 291 16 chr9 39479292 39479419 -102792025 - MER5B DNA MER1_type 0 178 17 268 298 32 0 chr9 39479436 39479530 -102791914 + MIR SINE MIR 88 184 -78 5234 161 85 61 chr9 39479531 39480378 -102791066 - Charlie1a DNA MER1_type -1306 1455 630 2028 112 24 7 chr9 39480378 39480665 -102790779 + AluSx SINE Alu 1 292 -20 1662 100 5 0 chr9 39480667 39480877 -102790567 + AluSg SINE Alu 1 211 -99 5234 161 85 61 chr9 39480877 39481217 -102790227 - Charlie1a DNA MER1_type -2131 630 133 2122 135 0 0 chr9 39481217 39481513 -102789931 - AluSq SINE Alu -17 296 1 5234 161 85 61 chr9 39481513 39481647 -102789797 - Charlie1a DNA MER1_type -2628 133 4 2202 104 28 0 chr9 39481748 39482036 -102789408 - AluSg SINE Alu -14 296 1 563 214 134 37 chr9 39482114 39482171 -102789273 - MLT1H LTR MaLR -8 541 491 2396 72 7 13 chr9 39482171 39482477 -102788967 + AluSp SINE Alu 1 304 -9 563 214 134 37 chr9 39482477 39482606 -102788838 - MLT1H LTR MaLR -58 491 343 507 108 0 0 chr9 39482678 39482771 -102788673 + (TTTC)n Simple_repeat Simple_repeat 4 96 0 2149 94 24 0 chr9 39482774 39483072 -102788372 - AluY SINE Alu -6 305 1 1250 168 74 4 chr9 39483268 39483524 -102787920 - Charlie1 DNA MER1_type -205 2556 2283 2249 109 3 0 chr9 39484223 39484525 -102786919 - AluSp SINE Alu -10 303 1 756 187 11 53 chr9 39484663 39484850 -102786594 - MIR SINE MIR -35 227 49 748 187 8 8 chr9 39486091 39486225 -102785219 - MLT1A2 LTR MaLR -2 363 230 970 153 43 139 chr9 39486242 39486375 -102785069 - MLT1A2 LTR MaLR -98 276 183 1700 181 0 20 chr9 39486375 39486679 -102784765 - AluJo SINE Alu -2 310 13 970 153 43 139 chr9 39486679 39486826 -102784618 - MLT1A2 LTR MaLR -191 183 23 371 319 101 44 chr9 39486868 39487166 -102784278 + L3 LINE CR1 982 1296 -281 275 310 60 17 chr9 39487260 39487376 -102784068 - MIR SINE MIR -58 150 30 2369 84 3 0 chr9 39487544 39487841 -102783603 - AluSp SINE Alu -15 298 1 2321 121 0 0 chr9 39488353 39488660 -102782784 - AluSx SINE Alu -4 308 2 2459 88 0 0 chr9 39489033 39489338 -102782106 + AluSq SINE Alu 1 305 -8 2596 69 0 0 chr9 39489585 39489890 -102781554 + AluY SINE Alu 1 305 -6 297 0 0 0 chr9 39490141 39490174 -102781270 + (TG)n Simple_repeat Simple_repeat 2 34 0 473 230 43 91 chr9 39490660 39490847 -102780597 - L1MC5 LINE L1 -46 7915 7738 2356 69 31 0 chr9 39490908 39491197 -102780247 + AluSc SINE Alu 1 298 -11 652 254 35 6 chr9 39491544 39491717 -102779727 - MER5B DNA MER1_type 0 178 1 440 192 40 0 chr9 39491734 39491833 -102779611 + MER5A DNA MER1_type 10 112 -77 1284 153 5 19 chr9 39491891 39492107 -102779337 + MER20 DNA MER1_type 6 218 -1 2117 127 3 10 chr9 39493399 39493713 -102777731 - AluSx SINE Alu 0 312 1 2336 243 152 110 chr9 39494030 39495126 -102776318 + HAL1 LINE L1 2 1051 -1456 2154 78 0 4 chr9 39495126 39495397 -102776047 + AluY SINE Alu 1 270 -41 2108 130 0 10 chr9 39495405 39495704 -102775740 + AluSx SINE Alu 1 296 -16 2336 243 152 110 chr9 39495704 39495727 -102775717 + HAL1 LINE L1 1057 1078 -1429 703 175 18 0 chr9 39495727 39495841 -102775603 + FLAM_C SINE Alu 2 117 -26 184 30 61 0 chr9 39495841 39495874 -102775570 + (TTTAA)n Simple_repeat Simple_repeat 2 36 0 2462 69 0 0 chr9 39495874 39496164 -102775280 - AluY SINE Alu -21 290 1 2336 243 152 110 chr9 39496164 39496948 -102774496 + HAL1 LINE L1 1077 2115 -392 869 244 69 47 chr9 39497210 39497574 -102773870 + HAL1 LINE L1 2108 2479 -28 1809 178 0 0 chr9 39497964 39498268 -102773176 - AluSx SINE Alu -8 304 1 273 245 42 14 chr9 39498281 39498496 -102772948 + CT-rich Low_complexity Low_complexity 1 221 0 2140 93 29 0 chr9 39498997 39499277 -102772167 - AluSx SINE Alu -24 288 1 299 262 12 67 chr9 39499283 39499301 -102772143 - L1MA10 LINE L1 0 6334 6317 840 204 43 43 chr9 39499301 39499512 -102771932 - L1ME1 LINE L1 -7 6159 5949 3558 173 73 126 chr9 39499523 39500087 -102771357 - L1M4 LINE L1 -4879 1663 1071 2008 108 3 21 chr9 39500087 39500264 -102771180 - AluSx SINE Alu 0 308 137 2606 68 0 0 chr9 39500264 39500575 -102770869 - AluY SINE Alu 0 311 1 2008 108 3 21 chr9 39500575 39500710 -102770734 - AluSx SINE Alu -171 137 1 3558 173 73 126 chr9 39500710 39500889 -102770555 - L1M4 LINE L1 -5471 1071 884 427 212 12 0 chr9 39500889 39500974 -102770470 + MER7A DNA MER2_type 22 105 -241 3558 173 73 126 chr9 39500974 39501184 -102770260 - L1M4 LINE L1 -5658 884 700 2359 107 3 0 chr9 39501184 39501493 -102769951 - AluSq SINE Alu -3 310 1 3558 173 73 126 chr9 39501493 39501714 -102769730 - L1M4 LINE L1 -5842 700 469 2082 126 0 13 chr9 39501715 39502016 -102769428 - AluJo SINE Alu -15 297 1 1643 113 4 0 chr9 39502220 39502450 -102768994 + AluSp SINE Alu 82 312 -1 997 234 75 50 chr9 39502462 39502744 -102768700 - L1M4 LINE L1 -6157 385 97 405 267 100 28 chr9 39502741 39502992 -102768452 + L1M4 LINE L1 4497 4765 -1381 * 2586 71 0 3 chr9 39503084 39503395 -102768049 + AluY SINE Alu 1 310 -1 2325 97 0 3 chr9 39503673 39503973 -102767471 - AluSx SINE Alu -13 299 1 436 262 78 0 chr9 39504137 39504278 -102767166 - HAL1 LINE L1 -953 1554 1403 1588 259 107 81 chr9 39504407 39504497 -102766947 - L1MEd LINE L1 -4874 1245 1159 2276 119 3 0 chr9 39504497 39504809 -102766635 - AluSq SINE Alu 0 313 1 1588 259 107 81 chr9 39504809 39504827 -102766617 - L1MEd LINE L1 -4960 1159 1143 2437 170 38 31 chr9 39504827 39505350 -102766094 - L1PB4 LINE L1 -6 6150 5624 1588 259 107 81 chr9 39505350 39506389 -102765055 - L1MEd LINE L1 -4976 1143 67 621 214 8 8 chr9 39507237 39507368 -102764076 - MIR3 SINE MIR 0 208 78 376 331 76 17 chr9 39507577 39507749 -102763695 - L3 LINE CR1 -354 1223 1042 207 222 19 37 chr9 39508133 39508187 -102763257 - L3 LINE CR1 -1091 486 434 492 32 0 0 chr9 39508273 39508335 -102763109 + (TG)n Simple_repeat Simple_repeat 1 62 0 2331 118 0 0 chr9 39508858 39509164 -102762280 + AluSx SINE Alu 1 306 -6 1918 170 3 0 chr9 39510068 39510368 -102761076 + AluJo SINE Alu 1 301 -11 236 297 51 8 chr9 39510620 39510738 -102760706 + L1ME4a LINE L1 5929 6051 -70 2479 88 0 0 chr9 39510759 39511064 -102760380 - AluSg SINE Alu -5 305 1 849 309 23 15 chr9 39511620 39512111 -102759333 - LTR67 LTR ERVL 0 557 19 184 313 50 25 chr9 39512752 39512832 -102758612 - L2 LINE L2 -19 3294 3213 301 256 86 34 chr9 39513812 39513929 -102757515 - MIR SINE MIR -80 182 60 186 43 0 0 chr9 39514676 39514699 -102756745 + (TG)n Simple_repeat Simple_repeat 2 24 0 315 289 10 0 chr9 39515192 39515296 -102756148 + MIR SINE MIR 32 136 -126 375 274 39 33 chr9 39516317 39516470 -102754974 + MIR SINE MIR 2 155 -107 613 215 178 23 chr9 39516480 39516699 -102754745 - MIR SINE MIR -2 260 8 355 204 0 61 chr9 39516718 39516816 -102754628 + MIR SINE MIR 146 237 -25 360 255 143 43 chr9 39517091 39517252 -102754192 - MIR SINE MIR -69 193 17 659 300 21 0 chr9 39517402 39517592 -102753852 - MIR SINE MIR -15 247 54 378 261 16 64 chr9 39519206 39519394 -102752050 - L1MC4a LINE L1 -1867 5941 5763 411 274 37 30 chr9 39519616 39519751 -102751693 + MIR SINE MIR 127 262 0 306 197 0 14 chr9 39520894 39520965 -102750479 - LTR37B LTR ERV1 0 468 399 2295 107 0 0 chr9 39520970 39521270 -102750174 - AluSx SINE Alu -12 300 1 357 225 31 101 chr9 39521496 39521625 -102749819 - MIR3 SINE MIR -8 200 81 721 203 31 129 chr9 39522530 39522786 -102748658 + MIR SINE MIR 32 262 0 477 213 95 22 chr9 39522785 39522936 -102748508 + MIR SINE MIR 69 227 -35 * 485 179 28 19 chr9 39522962 39523068 -102748376 - MLT1G LTR MaLR -472 118 12 357 264 14 50 chr9 39523105 39523245 -102748199 - MIR SINE MIR -57 151 17 3932 214 42 18 chr9 39523514 39524746 -102746698 - L1MB8 LINE L1 -187 5991 4881 443 273 36 0 chr9 39524999 39525109 -102746335 + MIR SINE MIR 34 147 -61 268 219 111 11 chr9 39525879 39526013 -102745431 - MLT1I LTR MaLR -14 535 278 282 161 12 161 chr9 39526102 39526183 -102745261 - MLT1I LTR MaLR -274 135 82 794 256 97 0 chr9 39526466 39526693 -102744751 + MIR SINE MIR 13 261 -1 586 250 76 0 chr9 39526686 39526830 -102744614 - MIR SINE MIR -107 155 1 * 855 284 44 25 chr9 39527458 39527820 -102743624 - L1MB8 LINE L1 -1973 4173 3805 358 19 19 19 chr9 39527921 39527973 -102743471 + (TG)n Simple_repeat Simple_repeat 1 52 0 2247 110 0 7 chr9 39528198 39528507 -102742937 - AluSx SINE Alu -5 307 1 25 0 0 0 chr9 39528513 39528538 -102742906 + AT_rich Low_complexity Low_complexity 1 25 0 2216 107 0 10 chr9 39528810 39529120 -102742324 - AluSq SINE Alu -4 309 3 2199 99 0 7 chr9 39529571 39529864 -102741580 - AluSg SINE Alu -19 291 1 369 282 126 34 chr9 39530958 39531112 -102740332 - MIR3 SINE MIR -68 140 5 321 294 0 34 chr9 39531453 39531572 -102739872 + L1MC4 LINE L1 7786 7900 -142 222 227 0 0 chr9 39531606 39531681 -102739763 + (TA)n Simple_repeat Simple_repeat 1 75 0 457 196 98 0 chr9 39531681 39531793 -102739651 + L1MC4 LINE L1 7903 8025 -17 449 248 127 31 chr9 39533605 39533749 -102737695 + MIR3 SINE MIR 5 163 -66 180 0 0 0 chr9 39534465 39534485 -102736959 + (TTTTA)n Simple_repeat Simple_repeat 3 22 0 1849 153 25 3 chr9 39534493 39534775 -102736669 - AluJo SINE Alu -24 288 1 299 193 36 36 chr9 39534775 39534858 -102736586 - L1MA10 LINE L1 -42 6292 6210 329 185 174 0 chr9 39535191 39535283 -102736161 + L2 LINE L2 3205 3312 -1 2041 136 10 3 chr9 39536056 39536351 -102735093 + AluSx SINE Alu 1 297 -15 23 33 0 0 chr9 39536583 39536613 -102734831 + AT_rich Low_complexity Low_complexity 1 30 0 195 194 0 0 chr9 39539224 39539260 -102732184 - L2 LINE L2 0 3313 3278 183 323 132 64 chr9 39539342 39539446 -102731998 - L2 LINE L2 -198 3074 2978 1955 157 3 3 chr9 39539446 39539758 -102731686 - AluJo SINE Alu 0 312 1 183 323 132 64 chr9 39539758 39539904 -102731540 - L2 LINE L2 -294 2978 2807 4578 150 58 35 chr9 39539962 39540066 -102731378 - L1MB7 LINE L1 0 6184 6084 2144 135 0 3 chr9 39540066 39540370 -102731074 + AluSx SINE Alu 1 303 -9 4578 150 58 35 chr9 39540370 39541300 -102730144 - L1MB7 LINE L1 -100 6084 5127 225 57 38 113 chr9 39541427 39541480 -102729964 - L1MC/D LINE L1 -2587 5455 5407 2039 209 54 63 chr9 39541641 39542145 -102729299 - L1ME1 LINE L1 -5 6230 5730 2648 42 0 3 chr9 39542145 39542451 -102728993 - AluY SINE Alu -6 305 1 2039 209 54 63 chr9 39542451 39542536 -102728908 - L1ME1 LINE L1 -505 5730 5646 2202 119 0 3 chr9 39542559 39542869 -102728575 - AluSx SINE Alu -3 309 1 1997 232 48 9 chr9 39542969 39543516 -102727928 - L1ME1 LINE L1 -1742 4473 3906 337 326 100 3 chr9 39543504 39543814 -102727630 - L1ME1 LINE L1 -4130 2266 1927 * 1270 249 82 50 chr9 39543866 39544606 -102726838 - L1ME1 LINE L1 -4576 1820 1057 589 247 49 37 chr9 39544682 39544844 -102726600 - FAM SINE Alu -21 164 1 253 253 103 66 chr9 39544852 39545125 -102726319 - L1ME1 LINE L1 -5329 1067 785 4381 82 26 0 chr9 39545658 39546232 -102725212 - L1PB2 LINE L1 -2 6149 5561 295 221 0 133 chr9 39546295 39546408 -102725036 + MER112 DNA MER1_type 150 247 -13 563 377 9 16 chr9 39546447 39546763 -102724681 - L2 LINE L2 -788 2526 2213 2281 83 22 26 chr9 39546899 39547211 -102724233 - AluSx SINE Alu -1 311 1 247 257 178 30 chr9 39547513 39547614 -102723830 + L3 LINE CR1 1184 1299 -278 289 68 164 96 chr9 39547621 39547694 -102723750 - MLT2A1 LTR ERVL 0 453 367 27 81 0 0 chr9 39547695 39547757 -102723687 + AT_rich Low_complexity Low_complexity 1 62 0 2973 75 0 8 chr9 39547771 39548158 -102723286 - MLT2A1 LTR ERVL -60 384 1 241 313 62 52 chr9 39548185 39548281 -102723163 + L2 LINE L2 3168 3264 -8 353 348 96 27 chr9 39548305 39548492 -102722952 + L3 LINE CR1 1374 1573 -4 612 205 63 153 chr9 39548579 39548630 -102722814 - MIR SINE MIR -12 250 196 940 189 107 19 chr9 39548630 39548836 -102722608 + MER58A DNA MER1_type 1 224 0 612 205 63 153 chr9 39548836 39549038 -102722406 - MIR SINE MIR -66 196 20 256 258 52 129 chr9 39549749 39549904 -102721540 + MIR3 SINE MIR 2 144 -64 220 361 115 16 chr9 39551442 39551564 -102719880 + MIR3 SINE MIR 5 138 -70 6912 166 50 26 chr9 39551702 39552680 -102718764 + L1MC3 LINE L1 3824 4776 -1370 1685 228 26 91 chr9 39552680 39553220 -102718224 - MLT1D LTR MaLR 0 505 1 6912 166 50 26 chr9 39553220 39553833 -102717611 + L1MC3 LINE L1 4776 5372 -774 213 39 0 0 chr9 39553833 39553859 -102717585 + (CA)n Simple_repeat Simple_repeat 2 27 0 6912 166 50 26 chr9 39553859 39554350 -102717094 + L1MC3 LINE L1 5372 5283 -863 2284 129 0 0 chr9 39554350 39554661 -102716783 + AluSx SINE Alu 1 311 -1 6912 166 50 26 chr9 39554661 39554787 -102716657 + L1MC3 LINE L1 5282 5403 -743 717 160 0 0 chr9 39554828 39554934 -102716510 - AluSq/x SINE Alu -205 107 2 700 154 0 20 chr9 39554934 39555083 -102716361 + CT-rich Low_complexity Low_complexity 3 148 0 240 35 0 0 chr9 39555159 39555188 -102716256 + (TCC)n Simple_repeat Simple_repeat 2 30 0 757 200 0 0 chr9 39555189 39555304 -102716140 - FLAM_A SINE Alu -18 115 1 487 48 0 0 chr9 39555856 39555918 -102715526 + L1PA13 LINE L1 6099 6160 -3 2176 111 24 0 chr9 39556206 39556504 -102714940 + AluSq SINE Alu 1 305 -8 1896 150 3 7 chr9 39556542 39556842 -102714602 + AluJb SINE Alu 1 299 -13 24 0 0 0 chr9 39556979 39557003 -102714441 + AT_rich Low_complexity Low_complexity 1 24 0 306 0 0 0 chr9 39557777 39557811 -102713633 + (CA)n Simple_repeat Simple_repeat 2 35 0 619 328 61 16 chr9 39557833 39558260 -102713184 + L3 LINE CR1 1131 1576 -1 2136 101 78 31 chr9 39558950 39559308 -102712136 - THE1C LTR MaLR 0 375 1 10775 110 7 56 chr9 39559308 39560967 -102710477 - THE1C-int LTR MaLR 0 1580 3 1959 139 75 33 chr9 39560969 39561329 -102710115 - THE1C LTR MaLR 0 375 1 455 297 181 31 chr9 39561477 39561903 -102709541 + L2 LINE L2 1889 2418 -896 628 231 15 8 chr9 39561903 39562033 -102709411 - MER94 DNA DNA -1 133 3 455 297 181 31 chr9 39562033 39562158 -102709286 + L2 LINE L2 2418 2523 -791 340 246 98 16 chr9 39562134 39562256 -102709188 + L2 LINE L2 3136 3267 -5 * 417 228 165 32 chr9 39562287 39562445 -102708999 - MIR3 SINE MIR -7 201 23 354 98 0 0 chr9 39562514 39562565 -102708879 + (TG)n Simple_repeat Simple_repeat 2 52 0 1991 141 3 41 chr9 39562678 39562997 -102708447 - AluJo SINE Alu -5 307 1 188 330 55 28 chr9 39563313 39563422 -102708022 + MIR3 SINE MIR 87 198 -10 1346 142 83 0 chr9 39563471 39563689 -102707755 + MER46A DNA MER2_type 1 236 0 351 78 0 0 chr9 39564648 39564699 -102706745 + (TG)n Simple_repeat Simple_repeat 1 51 0 578 238 93 7 chr9 39565009 39565160 -102706284 - MER5B DNA MER1_type 0 178 15 2268 100 0 0 chr9 39565765 39566056 -102705388 - AluSg SINE Alu -19 291 1 3769 152 2 5 chr9 39566065 39566637 -102704807 - L1PA16 LINE L1 -16 6150 5581 371 301 87 33 chr9 39566892 39567075 -102704369 - MLT1L LTR MaLR -114 501 309 2292 126 32 59 chr9 39567080 39567289 -102704155 - THE1B LTR MaLR 0 364 168 2095 107 35 3 chr9 39567289 39567578 -102703866 + AluSq SINE Alu 1 298 -15 2292 126 32 59 chr9 39567578 39567742 -102703702 - THE1B LTR MaLR -196 168 1 181 321 0 0 chr9 39567954 39568010 -102703434 + MIR SINE MIR 56 111 -151 445 272 0 0 chr9 39568103 39568217 -102703227 - MER103 DNA DNA -51 115 2 614 240 45 4 chr9 39568482 39568695 -102702749 + L2 LINE L2 3090 3310 -3 201 39 0 0 chr9 39569008 39569034 -102702410 + (GA)n Simple_repeat Simple_repeat 2 27 0 2053 121 3 7 chr9 39569179 39569461 -102701983 + AluSq SINE Alu 2 308 0 235 0 0 0 chr9 39569461 39569487 -102701957 + (CAAAA)n Simple_repeat Simple_repeat 1 105 0 195 259 56 83 chr9 39570367 39570475 -102700969 - MIR SINE MIR -66 196 92 2403 111 0 0 chr9 39570603 39570909 -102700535 + AluSx SINE Alu 1 306 -6 321 310 47 23 chr9 39570920 39571091 -102700353 - MER5B DNA MER1_type -3 175 1 281 274 26 71 chr9 39571137 39571250 -102700194 + MIR3 SINE MIR 88 195 -13 566 265 121 56 chr9 39571346 39571595 -102699849 + MLT1L LTR MaLR 5 269 -346 291 212 71 0 chr9 39571750 39571835 -102699609 - MLT1I LTR MaLR -3 406 316 1497 159 63 61 chr9 39571881 39572259 -102699185 + MLT1B LTR MaLR 11 389 -1 638 264 112 25 chr9 39572259 39572532 -102698912 - MLT1J2 LTR MaLR -137 313 17 301 352 22 6 chr9 39572537 39572716 -102698728 + MLT1L LTR MaLR 434 615 0 188 234 85 0 chr9 39573010 39573057 -102698387 + L2 LINE L2 3262 3312 -1 2191 115 3 16 chr9 39573126 39573438 -102698006 - AluSx SINE Alu -4 308 1 204 308 87 83 chr9 39573439 39573874 -102697570 + L2 LINE L2 2835 3271 -1 3802 164 6 3 chr9 39573999 39574639 -102696805 - L1MB4 LINE L1 0 6180 5539 291 227 93 0 chr9 39576051 39576126 -102695318 - L2 LINE L2 -52 3261 3180 388 250 46 0 chr9 39576163 39576271 -102695173 - MER20B DNA MER1_type -157 626 514 310 252 149 0 chr9 39576385 39576492 -102694952 - MER20B DNA MER1_type -267 516 394 210 71 0 0 chr9 39576522 39576550 -102694894 + (A)n Simple_repeat Simple_repeat 1 28 0 666 215 15 0 chr9 39576554 39576684 -102694760 + FLAM_A SINE Alu 1 132 -1 455 276 83 21 chr9 39577044 39577189 -102694255 + MIR3 SINE MIR 30 183 -25 337 272 70 40 chr9 39577253 39577551 -102693893 + L1ME4a LINE L1 5711 6017 -104 2070 149 18 37 chr9 39577837 39578219 -102693225 - THE1C LTR MaLR 0 375 1 521 316 48 0 chr9 39578309 39578477 -102692967 - MIR SINE MIR -74 188 13 27 0 0 0 chr9 39579602 39579629 -102691815 + AT_rich Low_complexity Low_complexity 1 27 0 192 289 0 0 chr9 39579759 39579804 -102691640 - L2 LINE L2 -17 3296 3252 274 225 25 62 chr9 39579882 39579962 -102691482 - MIR3 SINE MIR -50 158 82 2418 182 80 2 chr9 39580210 39580786 -102690658 - Charlie2 DNA MER1_type -11 2851 2231 483 232 71 0 chr9 39580796 39580908 -102690536 - MER91C DNA MER1_type -6 134 15 714 252 54 57 chr9 39580912 39581245 -102690199 - Charlie2 DNA MER1_type -2483 379 48 655 184 95 17 chr9 39581504 39581683 -102689761 - MIR SINE MIR -34 228 36 2386 104 0 0 chr9 39581746 39582053 -102689391 + AluSc SINE Alu 1 307 -2 329 270 88 15 chr9 39582077 39582137 -102689307 - MIR SINE MIR -13 249 195 1945 133 0 14 chr9 39582137 39582273 -102689171 + AluSx SINE Alu 1 137 -176 2461 99 0 0 chr9 39582273 39582577 -102688867 + AluSx SINE Alu 1 304 -8 1945 133 0 14 chr9 39582577 39582757 -102688687 + AluSx SINE Alu 137 313 0 329 270 88 15 chr9 39582757 39582832 -102688612 - MIR SINE MIR -67 195 103 248 306 31 10 chr9 39583075 39583173 -102688271 - L2 LINE L2 -5 3267 3168 474 286 32 0 chr9 39583614 39583740 -102687704 + MIR3 SINE MIR 71 200 -8 396 318 65 12 chr9 39584599 39584769 -102686675 + MIR SINE MIR 7 185 -77 353 190 13 25 chr9 39584781 39584860 -102686584 - L2 LINE L2 -7 3306 3229 404 263 230 0 chr9 39585387 39585539 -102685905 - MER5A DNA MER1_type -2 187 1 545 162 121 0 chr9 39586088 39586187 -102685257 - MER81 DNA DNA -3 111 1 481 291 82 19 chr9 39586237 39586443 -102685001 + MIR SINE MIR 13 231 -31 651 206 23 34 chr9 39586489 39586664 -102684780 - MER104 DNA Tc2 -1 179 7 212 360 11 34 chr9 39586664 39586753 -102684691 - L2 LINE L2 -42 3230 3144 255 228 117 28 chr9 39587881 39588026 -102683418 - L1ME4a LINE L1 -1 6120 5963 461 178 22 0 chr9 39588030 39588120 -102683324 - Zaphod DNA AcHobo 0 4031 3940 * 2792 233 82 27 chr9 39588098 39588947 -102682497 - Zaphod DNA AcHobo -3126 905 10 303 140 0 0 chr9 39588954 39589004 -102682440 + (TG)n Simple_repeat Simple_repeat 2 51 0 40 0 0 0 chr9 39589017 39589057 -102682387 + AT_rich Low_complexity Low_complexity 1 40 0 335 266 32 85 chr9 39589219 39589282 -102682162 - L1ME4a LINE L1 -280 5841 5776 2159 124 3 3 chr9 39589282 39589581 -102681863 - AluSx SINE Alu -13 299 1 335 266 32 85 chr9 39589581 39589705 -102681739 - L1ME4a LINE L1 -345 5776 5664 280 242 27 3 chr9 39589899 39589994 -102681450 + MIR SINE MIR 74 170 -62 256 270 27 14 chr9 39590367 39590441 -102681003 - L2 LINE L2 0 3272 3198 1134 229 174 10 chr9 39590622 39591019 -102680425 + MLT1C LTR MaLR 6 467 0 240 59 0 0 chr9 39591071 39591105 -102680339 + (TG)n Simple_repeat Simple_repeat 2 35 0 363 242 24 81 chr9 39591114 39591238 -102680206 + MIR3 SINE MIR 42 158 -50 1344 243 99 34 chr9 39591658 39592124 -102679320 - MLT1D LTR MaLR 0 505 10 494 264 36 48 chr9 39592499 39592602 -102678842 - MIR SINE MIR -72 190 88 3100 90 9 29 chr9 39592602 39593003 -102678441 - MER57B LTR ERV1 0 434 41 2370 116 0 3 chr9 39593003 39593314 -102678130 + AluSx SINE Alu 1 310 -2 3100 90 9 29 chr9 39593314 39593355 -102678089 - MER57B LTR ERV1 -393 41 1 494 264 36 48 chr9 39593355 39593418 -102678026 - MIR SINE MIR -174 88 26 244 216 189 18 chr9 39593473 39593584 -102677860 + MIR SINE MIR 23 152 -56 348 277 96 31 chr9 39594340 39594600 -102676844 - L1ME4a LINE L1 -204 5917 5641 21 0 0 0 chr9 39594600 39594621 -102676823 + AT_rich Low_complexity Low_complexity 1 21 0 1225 139 77 39 chr9 39594638 39594846 -102676598 + AluSg SINE Alu 5 220 -90 1367 167 8 33 chr9 39594948 39595193 -102676251 - AluJo SINE Alu -52 260 22 493 234 132 38 chr9 39595219 39595454 -102675990 - L1ME4a LINE L1 -487 5634 5378 323 353 13 20 chr9 39595559 39595709 -102675735 - MIR3 SINE MIR -59 149 1 302 365 28 14 chr9 39596162 39596307 -102675137 + MIR3 SINE MIR 33 179 -29 2212 122 0 3 chr9 39596507 39596810 -102674634 - AluSg SINE Alu -8 302 1 2175 139 3 0 chr9 39596810 39597113 -102674331 - AluSx SINE Alu -8 304 1 198 71 0 0 chr9 39597769 39597797 -102673647 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 280 309 40 0 chr9 39598434 39598560 -102672884 - L1ME4a LINE L1 -5 6116 5986 228 261 115 13 chr9 39598624 39598781 -102672663 - L1ME4a LINE L1 -238 5883 5711 826 165 0 0 chr9 39598788 39598909 -102672535 - AluJb SINE Alu -191 121 1 1601 153 83 63 chr9 39598909 39599210 -102672234 - AluJb SINE Alu -5 307 1 376 266 6 108 chr9 39599215 39599237 -102672207 - L1ME4a LINE L1 -383 5738 5715 326 241 13 0 chr9 39599237 39599316 -102672128 + MER116 DNA Mariner 1 80 0 376 266 6 108 chr9 39599316 39599451 -102671993 - L1ME4a LINE L1 -406 5715 5597 236 281 78 102 chr9 39601713 39601880 -102669564 + L2 LINE L2 3107 3269 -3 258 32 0 0 chr9 39602175 39602206 -102669238 + (CA)n Simple_repeat Simple_repeat 2 32 0 273 305 169 23 chr9 39602429 39602606 -102668838 - L3 LINE CR1 -1258 319 117 306 243 21 86 chr9 39602734 39602874 -102668570 + MIR SINE MIR 92 222 -40 248 309 71 12 chr9 39602935 39603019 -102668425 - L2 LINE L2 -51 3221 3133 182 213 21 21 chr9 39604353 39604400 -102667044 + L2 LINE L2 3226 3272 0 313 291 42 98 chr9 39604516 39604801 -102666643 - L3 LINE CR1 -8 1569 1301 232 322 11 11 chr9 39605888 39605978 -102665466 - L2 LINE L2 -24 3248 3159 260 250 15 15 chr9 39606202 39606270 -102665174 - L2 LINE L2 -1 3271 3204 2169 99 3 7 chr9 39606611 39606903 -102664541 - AluSc SINE Alu -18 291 1 275 253 52 96 chr9 39606915 39607144 -102664300 - L2 LINE L2 -40 3232 3014 393 178 29 5 chr9 39607552 39607646 -102663798 + MIR SINE MIR 71 166 -42 884 242 5 5 chr9 39608305 39608491 -102662953 + MIR SINE MIR 20 205 -57 462 239 65 107 chr9 39608603 39608786 -102662658 + MLT1K LTR MaLR 217 377 -211 2285 129 0 0 chr9 39608786 39609096 -102662348 + AluSx SINE Alu 1 310 -2 462 239 65 107 chr9 39609096 39609297 -102662147 + MLT1K LTR MaLR 377 585 -3 188 293 0 0 chr9 39609306 39609347 -102662097 + L2 LINE L2 3214 3254 -18 244 184 41 0 chr9 39610292 39610341 -102661103 - MIR SINE MIR -110 152 102 189 241 17 35 chr9 39611159 39611217 -102660227 - MIR SINE MIR -98 164 108 515 271 8 0 chr9 39611665 39611787 -102659657 + MIR SINE MIR 31 153 -109 462 254 34 0 chr9 39611787 39611905 -102659539 + MER94 DNA DNA 1 122 -12 232 161 81 0 chr9 39611914 39611976 -102659468 + MIR SINE MIR 141 207 -55 4508 135 25 73 chr9 39613793 39614660 -102656784 + L1MC1 LINE L1 5508 6333 0 344 304 61 9 chr9 39614700 39614914 -102656530 - L1ME4a LINE L1 -253 5868 5644 563 219 0 42 chr9 39615259 39615378 -102656066 - MER81 DNA DNA 0 114 1 433 343 109 34 chr9 39615786 39616030 -102655414 + MIR SINE MIR 2 262 0 478 268 84 103 chr9 39616137 39616563 -102654881 + L2 LINE L2 2844 3261 -11 207 325 73 39 chr9 39616570 39616804 -102654640 - L2 LINE L2 -160 3112 2871 808 141 41 18 chr9 39616956 39617126 -102654318 - MER53 DNA DNA -15 174 1 334 250 78 61 chr9 39617866 39618002 -102653442 - MIR SINE MIR -63 145 9 355 214 79 0 chr9 39618531 39618620 -102652824 - MLT1J1 LTR MaLR -1 445 350 356 136 30 0 chr9 39618646 39618712 -102652732 - MER53 DNA DNA 0 189 122 336 262 0 0 chr9 39618802 39618886 -102652558 - MER53 DNA DNA -105 84 1 708 226 81 39 chr9 39618893 39619176 -102652268 - MLT1J2 LTR MaLR -118 332 38 387 0 0 0 chr9 39619188 39619231 -102652213 + (CA)n Simple_repeat Simple_repeat 2 44 0 1487 209 48 18 chr9 39619495 39619825 -102651619 + MLT1A1 LTR MaLR 26 365 0 482 264 168 0 chr9 39619864 39620021 -102651423 + MIR SINE MIR 68 249 -13 740 236 20 35 chr9 39621781 39621980 -102649464 - MIR SINE MIR -16 246 51 195 310 100 0 chr9 39622168 39622268 -102649176 - L2 LINE L2 -1 3271 3162 215 227 0 15 chr9 39622387 39622453 -102648991 - L2 LINE L2 -293 2979 2915 511 301 88 5 chr9 39622974 39623167 -102648277 + MIR SINE MIR 37 245 -17 2429 89 13 0 chr9 39623245 39623548 -102647896 + AluSq SINE Alu 2 308 -5 289 186 68 0 chr9 39624621 39624680 -102646764 - MIR SINE MIR -116 146 84 256 147 58 32 chr9 39624888 39625044 -102646400 + (TG)n Simple_repeat Simple_repeat 2 161 0 528 84 65 29 chr9 39625073 39625497 -102645947 + (TG)n Simple_repeat Simple_repeat 1 439 0 490 61 56 56 chr9 39625523 39625703 -102645741 + (TG)n Simple_repeat Simple_repeat 1 180 0 567 65 77 12 chr9 39625789 39625957 -102645487 + (TG)n Simple_repeat Simple_repeat 1 179 0 404 44 56 22 chr9 39626080 39626170 -102645274 + (TG)n Simple_repeat Simple_repeat 1 93 0 554 295 111 9 chr9 39626755 39626972 -102644472 + L2 LINE L2 3074 3312 -1 295 187 67 13 chr9 39627149 39627224 -102644220 + L2 LINE L2 3194 3272 0 2260 64 36 0 chr9 39627716 39627996 -102643448 - AluSq SINE Alu -22 291 2 661 138 8 8 chr9 39628109 39628232 -102643212 + CT-rich Low_complexity Low_complexity 4 126 0 277 225 28 0 chr9 39628242 39628313 -102643131 - MER39 LTR ERV1 -92 615 543 292 301 179 42 chr9 39628485 39628820 -102642624 - L2 LINE L2 -233 3039 2652 239 264 46 75 chr9 39629446 39629620 -102641824 - MER104 DNA Tc2 -1 179 11 993 241 28 0 chr9 39630784 39631033 -102640411 + MIR SINE MIR 3 258 -4 264 355 79 13 chr9 39631050 39631202 -102640242 + MIR SINE MIR 47 208 -54 250 268 158 0 chr9 39632077 39632159 -102639285 - MIR SINE MIR -110 152 58 350 236 49 65 chr9 39632483 39632606 -102638838 + MIR SINE MIR 81 201 -61 202 309 44 20 chr9 39633023 39633188 -102638256 - MIR SINE MIR -62 146 5 377 310 25 35 chr9 39633229 39633432 -102638012 - LTR67 LTR ERVL 0 557 357 535 272 22 11 chr9 39634374 39634554 -102636890 + MIR SINE MIR 66 247 -15 283 267 209 0 chr9 39634770 39634875 -102636569 - MER5B DNA MER1_type 0 178 52 484 143 20 0 chr9 39634876 39634974 -102636470 + (TCTA)n Simple_repeat Simple_repeat 1 100 0 5432 68 0 1 chr9 39635539 39636259 -102635185 - L1PA7 LINE L1 -1 6153 5435 846 218 124 0 chr9 39637630 39637823 -102633621 - MIR SINE MIR -26 236 20 226 326 83 21 chr9 39638115 39638259 -102633185 + L2 LINE L2 2826 2978 -294 337 253 96 14 chr9 39638365 39638511 -102632933 - L1ME4a LINE L1 0 6121 5964 3017 35 0 30 chr9 39638618 39638998 -102632446 - L1PA3 LINE L1 0 6155 5786 2907 13 0 0 chr9 39638998 39639306 -102632138 - AluYb8 SINE Alu -10 308 1 3017 35 0 30 chr9 39639306 39639327 -102632117 - L1PA3 LINE L1 -369 5786 5766 1051 146 0 56 chr9 39639367 39639545 -102631899 - AluJb SINE Alu -14 298 131 308 234 234 29 chr9 39639618 39639755 -102631689 - L1ME4a LINE L1 -267 5854 5690 183 42 0 0 chr9 39639950 39639974 -102631470 + (TGAA)n Simple_repeat Simple_repeat 4 27 0 840 333 34 26 chr9 39640674 39641314 -102630130 - L2 LINE L2 0 3313 2670 1922 161 6 6 chr9 39644772 39645083 -102626361 + AluJb SINE Alu 1 311 -1 856 274 5 0 chr9 39645222 39645430 -102626014 + MIR SINE MIR 43 251 -11 1381 191 98 56 chr9 39645444 39645852 -102625592 - MLT1C LTR MaLR -7 460 36 651 337 132 16 chr9 39645865 39646245 -102625199 - MLT1K LTR MaLR -158 430 7 516 293 57 25 chr9 39646285 39646565 -102624879 + L3 LINE CR1 1245 1533 -44 513 214 209 16 chr9 39646565 39646624 -102624820 + MER112 DNA MER1_type 1 47 -213 279 0 0 0 chr9 39646624 39646655 -102624789 + (CA)n Simple_repeat Simple_repeat 2 32 0 513 214 209 16 chr9 39646655 39646777 -102624667 + MER112 DNA MER1_type 47 217 -43 268 233 17 0 chr9 39646784 39646844 -102624600 + L3 LINE CR1 1516 1576 -1 360 0 0 0 chr9 39647409 39647449 -102623995 + (TG)n Simple_repeat Simple_repeat 1 40 0 232 235 0 0 chr9 39647503 39647554 -102623890 + (TGGA)n Simple_repeat Simple_repeat 3 53 0 1621 219 70 5 chr9 39647572 39647987 -102623457 - L2 LINE L2 0 3313 2872 556 182 9 0 chr9 39647987 39648097 -102623347 - LTR16A LTR ERVL -19 431 321 786 306 5 5 chr9 39648105 39648327 -102623117 - LTR16A LTR ERVL -93 357 136 1194 237 180 7 chr9 39648442 39648859 -102622585 - L2 LINE L2 -511 2803 2315 542 357 80 15 chr9 39649158 39649483 -102621961 - L2 LINE L2 -754 2560 2215 180 271 42 0 chr9 39649762 39649810 -102621634 + L3b LINE CR1 1517 1566 -17 360 258 11 0 chr9 39650800 39650889 -102620555 - MER117 DNA MER1_type -107 90 1 2293 106 3 0 chr9 39651045 39651337 -102620107 - AluSp SINE Alu -20 293 1 2186 145 0 0 chr9 39652346 39652657 -102618787 + AluSx SINE Alu 1 311 -1 1802 159 37 14 chr9 39654048 39654344 -102617100 + AluJb SINE Alu 1 303 -9 389 133 24 0 chr9 39654344 39654427 -102617017 + GA-rich Low_complexity Low_complexity 1 85 0 519 17 0 0 chr9 39654589 39654649 -102616795 + (CA)n Simple_repeat Simple_repeat 1 60 0 796 182 63 0 chr9 39654770 39654929 -102616515 + MER3 DNA MER1_type 1 122 -87 533 267 148 18 chr9 39655420 39655637 -102615807 - MIR SINE MIR -16 246 2 336 260 126 0 chr9 39657425 39657552 -102613892 + MIR SINE MIR 45 187 -75 744 242 82 9 chr9 39657609 39657828 -102613616 + MIR SINE MIR 28 262 0 649 292 84 44 chr9 39658651 39658901 -102612543 - MLT1I LTR MaLR -1 408 149 676 228 42 50 chr9 39659079 39659239 -102612205 - MLT1I LTR MaLR -241 168 18 181 406 10 0 chr9 39659256 39659352 -102612092 + MIR SINE MIR 161 257 -5 214 188 42 0 chr9 39659381 39659429 -102612015 - MIR SINE MIR -123 139 90 501 264 42 0 chr9 39659630 39659774 -102611670 - MIR SINE MIR -77 185 36 203 79 26 0 chr9 39659958 39659996 -102611448 + (GA)n Simple_repeat Simple_repeat 1 39 0 345 200 114 19 chr9 39660196 39660301 -102611143 + MER91B DNA MER1_type 26 140 -50 1165 257 189 0 chr9 39660313 39660725 -102610719 + LTR33 LTR ERVL 25 514 -7 186 133 0 0 chr9 39662379 39662409 -102609035 + (TTCA)n Simple_repeat Simple_repeat 4 33 0 453 220 167 13 chr9 39662545 39662704 -102608740 + MIR SINE MIR 63 244 -18 249 237 124 21 chr9 39664429 39664526 -102606918 - L2 LINE L2 -61 3211 3105 317 82 20 0 chr9 39664583 39664632 -102606812 + (TG)n Simple_repeat Simple_repeat 1 50 0 216 303 101 11 chr9 39665105 39665194 -102606250 + MIR SINE MIR 6 102 -160 819 247 109 39 chr9 39665205 39665488 -102605956 - MLT1I LTR MaLR 0 409 107 327 226 60 0 chr9 39665548 39665632 -102605812 + MIR SINE MIR 116 204 -58 303 193 23 34 chr9 39666288 39666376 -102605068 - MIR SINE MIR -10 252 166 671 253 142 4 chr9 39666510 39666735 -102604709 - MIR SINE MIR -5 257 2 516 313 34 57 chr9 39666761 39667058 -102604386 + L3 LINE CR1 1249 1538 -39 472 286 21 0 chr9 39667960 39668100 -102603344 + MIR3 SINE MIR 32 174 -34 355 226 150 15 chr9 39668914 39669047 -102602397 - MIR SINE MIR 0 262 112 857 150 9 141 chr9 39669196 39669334 -102602110 - MER5A DNA MER1_type -4 185 83 1447 144 15 0 chr9 39669334 39669597 -102601847 - L1MA2 LINE L1 0 6304 6038 857 150 9 141 chr9 39669597 39669671 -102601773 - MER5A DNA MER1_type -106 83 1 694 256 15 20 chr9 39669689 39669884 -102601560 + L2 LINE L2 3118 3311 -2 194 172 0 103 chr9 39669888 39669946 -102601498 - MIR SINE MIR -133 75 24 330 167 0 0 chr9 39670630 39670690 -102600754 + T-rich Low_complexity Low_complexity 1 60 0 647 260 72 27 chr9 39671056 39671279 -102600165 - MIR SINE MIR 0 262 30 260 309 102 21 chr9 39671335 39671477 -102599967 + MIR SINE MIR 31 182 -62 461 346 43 0 chr9 39671546 39671734 -102599710 - L3 LINE CR1 -237 1340 1145 287 258 192 0 chr9 39671709 39671829 -102599615 + MIR SINE MIR 86 228 -34 * 268 206 44 0 chr9 39671936 39672004 -102599440 - L1ME2 LINE L1 -11 6153 6083 3601 232 62 19 chr9 39672017 39673814 -102597630 - L1ME2 LINE L1 -153 6011 4132 554 344 26 33 chr9 39674032 39674305 -102597139 + MLT1I LTR MaLR 7 277 -132 564 260 32 0 chr9 39674451 39674605 -102596839 + MLT1I LTR MaLR 236 394 -15 393 300 72 65 chr9 39675700 39675990 -102595454 - L2 LINE L2 -86 3227 2936 326 301 91 38 chr9 39676059 39676350 -102595094 - L2 LINE L2 -177 3095 2712 749 288 74 54 chr9 39676694 39677100 -102594344 - MLT1K LTR MaLR -15 573 160 37 0 0 0 chr9 39677308 39677345 -102594099 + AT_rich Low_complexity Low_complexity 1 37 0 410 338 0 0 chr9 39677481 39677617 -102593827 + MIR SINE MIR 17 152 -56 271 327 40 13 chr9 39677908 39678058 -102593386 - L3 LINE CR1 -1 1576 1423 191 214 0 0 chr9 39678116 39678158 -102593286 - L2 LINE L2 -301 2971 2930 1409 152 7 82 chr9 39678768 39679071 -102592373 + AluJb SINE Alu 33 312 0 906 138 6 22 chr9 39679077 39679258 -102592186 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 716 177 23 31 chr9 39679888 39680018 -102591426 + FLAM_C SINE Alu 3 131 -12 357 192 51 45 chr9 39680602 39680758 -102590686 + (TCTCTG)n Simple_repeat Simple_repeat 5 161 0 222 279 32 26 chr9 39680691 39680845 -102590599 + CT-rich Low_complexity Low_complexity 6 160 0 * 203 59 0 29 chr9 39680854 39680888 -102590556 + (TC)n Simple_repeat Simple_repeat 1 33 0 230 247 82 0 chr9 39681565 39681650 -102589794 + MIR SINE MIR 56 147 -61 203 262 7 121 chr9 39681996 39682137 -102589307 + L2 LINE L2 2916 3040 -232 1226 240 92 45 chr9 39682441 39682933 -102588511 - LTR33 LTR ERVL -6 515 1 345 24 0 0 chr9 39683874 39683916 -102587528 + (CA)n Simple_repeat Simple_repeat 2 43 0 1102 274 97 32 chr9 39685773 39686248 -102585196 + MLT1J LTR MaLR 6 511 0 2070 118 0 13 chr9 39686537 39686850 -102584594 - AluSg SINE Alu -1 309 1 251 325 114 0 chr9 39686940 39687054 -102584390 - L3 LINE CR1 -36 1541 1415 301 362 8 8 chr9 39687283 39687410 -102584034 + L2 LINE L2 3145 3271 -1 523 299 16 27 chr9 39687703 39687890 -102583554 + MIR SINE MIR 23 207 -55 2013 239 71 2 chr9 39688221 39688685 -102582759 - MLT1E1 LTR MaLR -3 651 156 182 170 0 132 chr9 39689378 39689431 -102582013 + L2 LINE L2 3217 3262 -10 1143 226 50 27 chr9 39689768 39690069 -102581375 + MLT1J2 LTR MaLR 13 320 -130 253 167 21 0 chr9 39690104 39690152 -102581292 - MLT1E1 LTR MaLR -99 555 507 * 391 276 0 9 chr9 39690136 39690241 -102581203 + MLT1J2 LTR MaLR 347 450 0 719 226 0 0 chr9 39690904 39691037 -102580407 - FLAM_A SINE Alu 0 133 1 1942 149 117 3 chr9 39691766 39692116 -102579328 + MLT1B LTR MaLR 1 390 0 469 243 18 59 chr9 39692820 39692989 -102578455 + L2 LINE L2 2898 3059 -213 292 236 45 55 chr9 39693265 39693375 -102578069 - MIR SINE MIR -56 206 98 818 156 2 22 chr9 39694432 39694726 -102576718 + AluJo SINE Alu 5 246 -66 321 258 135 0 chr9 39694729 39694818 -102576626 + L2 LINE L2 3213 3313 0 205 178 0 0 chr9 39695665 39695710 -102575734 + T-rich Low_complexity Low_complexity 1 45 0 258 56 0 0 chr9 39696235 39696271 -102575173 + (TG)n Simple_repeat Simple_repeat 2 37 0 216 308 10 58 chr9 39698138 39698242 -102573202 + MIR3 SINE MIR 61 159 -49 182 295 82 0 chr9 39699037 39699098 -102572346 + MIR SINE MIR 120 185 -77 294 234 153 9 chr9 39700180 39700291 -102571153 + MIR3 SINE MIR 11 137 -71 387 269 0 37 chr9 39700635 39700769 -102570675 - MIR3 SINE MIR -78 130 2 190 239 0 0 chr9 39701486 39701532 -102569912 + MIR3 SINE MIR 147 192 -16 1060 248 0 0 chr9 39702662 39702884 -102568560 + MER58A DNA MER1_type 3 224 0 252 215 177 0 chr9 39703071 39703150 -102568294 - MIR SINE MIR -19 243 151 277 262 18 95 chr9 39703155 39703323 -102568121 + L2 LINE L2 2906 3060 -212 180 77 0 0 chr9 39703546 39703572 -102567872 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 717 161 0 0 chr9 39704824 39704973 -102566471 + (TG)n Simple_repeat Simple_repeat 2 150 0 197 214 0 0 chr9 39705302 39705344 -102566100 - MIR SINE MIR -109 153 112 1098 271 63 48 chr9 39705389 39705932 -102565512 + LTR67 LTR ERVL 7 557 0 767 269 29 29 chr9 39706103 39706348 -102565096 + MIR SINE MIR 6 250 -12 464 303 46 7 chr9 39706768 39706920 -102564524 - MER91A DNA MER1_type -4 192 35 349 223 250 0 chr9 39708189 39708301 -102563143 - MER117 DNA MER1_type -47 150 11 193 156 0 0 chr9 39709048 39709080 -102562364 - MIR SINE MIR -63 145 114 288 0 0 0 chr9 39710168 39710200 -102561244 + (CA)n Simple_repeat Simple_repeat 1 32 0 181 239 22 0 chr9 39710575 39710621 -102560823 + L2 LINE L2 3012 3058 -214 796 210 85 28 chr9 39711082 39711330 -102560114 + L2 LINE L2 3039 3300 -13 186 43 0 0 chr9 39711330 39711353 -102560091 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 215 298 145 32 chr9 39711818 39711942 -102559502 - L2 LINE L2 -214 3058 2921 411 282 32 0 chr9 39712866 39712990 -102558454 + MIR SINE MIR 70 197 -65 544 301 13 13 chr9 39713736 39713950 -102557494 + MIR SINE MIR 5 216 -46 314 306 0 24 chr9 39714105 39714229 -102557215 - MIR3 SINE MIR 0 208 88 189 308 31 0 chr9 39714641 39714706 -102556738 - MIR SINE MIR -112 96 30 386 319 43 57 chr9 39714801 39715011 -102556433 - L1MC4 LINE L1 -7 8035 7829 465 216 8 71 chr9 39715044 39715204 -102556240 - L1ME2 LINE L1 0 6162 6013 273 314 7 29 chr9 39716126 39716266 -102555178 + (CATATA)n Simple_repeat Simple_repeat 4 140 0 399 245 65 79 chr9 39716266 39716405 -102555039 + MIR3 SINE MIR 49 185 -23 246 245 85 11 chr9 39716754 39716848 -102554596 + MIR SINE MIR 39 139 -123 269 163 0 0 chr9 39717148 39717197 -102554247 + Charlie8 DNA MER1_type 1369 1417 -1000 356 268 57 128 chr9 39717573 39717957 -102553487 + L2 LINE L2 2873 3229 -43 1724 111 0 0 chr9 39718346 39718590 -102552854 - AluY SINE Alu -4 307 64 243 269 187 23 chr9 39719802 39719973 -102551471 + MIR SINE MIR 14 212 -50 247 289 16 33 chr9 39720987 39721108 -102550336 - L2 LINE L2 -53 3219 3101 475 218 16 129 chr9 39721528 39721569 -102549875 + MER5B DNA MER1_type 1 45 -133 2413 88 0 3 chr9 39721569 39721864 -102549580 + AluY SINE Alu 1 294 -17 2335 102 7 0 chr9 39721873 39722167 -102549277 + AluSg SINE Alu 1 296 -14 475 218 16 129 chr9 39722167 39722308 -102549136 + MER5B DNA MER1_type 53 171 -7 228 67 0 0 chr9 39722844 39722874 -102548570 + (GGGGA)n Simple_repeat Simple_repeat 3 32 0 247 185 0 37 chr9 39723028 39723082 -102548362 - L2 LINE L2 0 3313 3262 1507 244 83 19 chr9 39723103 39723749 -102547695 - L2 LINE L2 0 3313 2608 448 329 0 0 chr9 39724742 39724885 -102546559 + MER91A DNA MER1_type 1 143 -53 728 121 7 29 chr9 39725166 39725306 -102546138 - FRAM SINE Alu -39 137 1 205 298 10 67 chr9 39725360 39725464 -102545980 - MIR SINE MIR -43 165 67 294 333 39 32 chr9 39725550 39725706 -102545738 + MIR SINE MIR 90 246 -16 2216 107 0 0 chr9 39725708 39725988 -102545456 + AluSg SINE Alu 1 280 -30 311 247 0 35 chr9 39727390 39727475 -102543969 + GA-rich Low_complexity Low_complexity 4 85 0 197 283 221 0 chr9 39728591 39728704 -102542740 + MIR3 SINE MIR 61 198 -10 251 222 0 14 chr9 39729569 39729641 -102541803 + CT-rich Low_complexity Low_complexity 1 71 0 216 244 78 44 chr9 39731549 39731639 -102539805 + MIR SINE MIR 162 254 -8 1383 63 0 0 chr9 39731668 39731927 -102539517 + (TGGA)n Simple_repeat Simple_repeat 1 259 0 258 296 76 81 chr9 39734146 39734318 -102537126 - MIR3 SINE MIR -6 202 32 427 277 121 107 chr9 39734687 39735117 -102536327 + L2 LINE L2 2837 3272 0 280 346 46 20 chr9 39735511 39735664 -102535780 - L3 LINE CR1 -149 1428 1272 894 226 77 17 chr9 39736620 39736855 -102534589 - MIR SINE MIR 0 262 14 343 346 10 0 chr9 39737026 39737130 -102534314 - L2 LINE L2 -9 3263 3159 1413 234 93 27 chr9 39737274 39737748 -102533696 + MLT1D LTR MaLR 1 505 0 226 336 140 0 chr9 39738544 39738687 -102532757 + L3 LINE CR1 666 828 -749 1961 145 6 22 chr9 39738803 39739114 -102532330 + AluJb SINE Alu 1 306 -6 1465 214 49 40 chr9 39739538 39739987 -102531457 + MLT1D LTR MaLR 53 505 0 200 291 0 0 chr9 39740188 39740243 -102531201 - L2 LINE L2 -253 3060 3006 271 291 0 43 chr9 39740723 39740840 -102530604 + GA-rich Low_complexity Low_complexity 1 112 0 1906 225 150 19 chr9 39741780 39742348 -102529096 - MER115 DNA AcHobo 0 693 52 2103 125 0 47 chr9 39742378 39742699 -102528745 - AluSx SINE Alu -6 306 1 1001 166 33 5 chr9 39742824 39743035 -102528409 + L1MA7 LINE L1 6075 6291 0 23 54 0 0 chr9 39743035 39743072 -102528372 + AT_rich Low_complexity Low_complexity 1 37 0 360 125 0 0 chr9 39744065 39744129 -102527315 + (CA)n Simple_repeat Simple_repeat 1 64 0 221 296 130 0 chr9 39744517 39744632 -102526812 - L2 LINE L2 -1 3271 3142 824 313 87 41 chr9 39745132 39745228 -102526216 + L1M4 LINE L1 3070 3160 -2986 1796 131 67 25 chr9 39745228 39745510 -102525934 + AluSx SINE Alu 9 302 -10 824 313 87 41 chr9 39745510 39745825 -102525619 + L1M4 LINE L1 3160 3500 -2646 234 298 37 31 chr9 39745922 39746083 -102525361 + L1P LINE L1 3589 3750 -2396 1068 128 5 32 chr9 39746594 39746781 -102524663 + MER49 LTR ERV1 715 896 -27 1534 214 61 6 chr9 39747344 39748370 -102523074 + L1 LINE L1 2637 3757 -2389 450 281 40 62 chr9 39748545 39748769 -102522675 - MIR SINE MIR -10 252 34 309 272 10 39 chr9 39748814 39748972 -102522472 + MIR SINE MIR 64 214 -48 713 175 0 0 chr9 39750336 39750456 -102520988 + FLAM_A SINE Alu 1 120 -13 919 275 0 4 chr9 39751019 39751259 -102520185 + MIR SINE MIR 1 239 -23 371 324 98 57 chr9 39751923 39752167 -102519277 - L2 LINE L2 0 3272 3019 374 269 39 18 chr9 39752408 39752585 -102518859 - MIR SINE MIR -71 191 19 376 311 158 6 chr9 39752852 39753016 -102518428 + MIR3 SINE MIR 20 208 0 2402 160 49 39 chr9 39753218 39753712 -102517732 + MLT1D LTR MaLR 1 499 -6 529 208 135 78 chr9 39753883 39754075 -102517369 - MIR SINE MIR -36 226 24 320 337 10 0 chr9 39754357 39754455 -102516989 - L3 LINE CR1 -143 1434 1336 1826 148 4 0 chr9 39755039 39755302 -102516142 + AluJb SINE Alu 35 298 -14 229 296 0 0 chr9 39755526 39755580 -102515864 + L2 LINE L2 3127 3180 -92 193 286 0 0 chr9 39756524 39756580 -102514864 - L2 LINE L2 -298 2974 2919 877 249 17 9 chr9 39756698 39756902 -102514542 - MER102a DNA MER1_type -1090 327 119 1818 129 0 4 chr9 39756902 39757157 -102514287 - AluJb SINE Alu -5 307 54 877 249 17 9 chr9 39757157 39757185 -102514259 - MER102a DNA MER1_type -1298 119 93 618 231 108 51 chr9 39757270 39757565 -102513879 - L1MC4a LINE L1 -1767 6041 5730 204 40 0 0 chr9 39758021 39758046 -102513398 + (TTCA)n Simple_repeat Simple_repeat 3 27 0 336 302 177 36 chr9 39758066 39758371 -102513073 + L2 LINE L2 2945 3292 -21 834 106 8 15 chr9 39758415 39758547 -102512897 - FLAM_C SINE Alu -2 131 1 732 279 41 0 chr9 39759325 39759544 -102511900 - MIR SINE MIR 0 262 35 382 224 121 0 chr9 39759660 39759776 -102511668 + MIR3 SINE MIR 35 164 -44 358 281 38 41 chr9 39759928 39760118 -102511326 - MIR3 SINE MIR -61 147 11 1985 249 48 15 chr9 39761108 39761813 -102509631 + MER20B DNA MER1_type 6 778 -5 549 277 57 109 chr9 39762021 39762577 -102508867 - L1MC4a LINE L1 -529 5592 5356 416 286 82 18 chr9 39762648 39762819 -102508625 - L1MC4a LINE L1 -846 5300 5119 1821 153 53 0 chr9 39762877 39763159 -102508285 + AluJo SINE Alu 1 297 -15 293 332 99 14 chr9 39763272 39763624 -102507820 - L1MC4a LINE L1 -1217 4929 4548 21 0 0 0 chr9 39763722 39763743 -102507701 + AT_rich Low_complexity Low_complexity 1 21 0 2086 167 0 0 chr9 39763761 39764072 -102507372 - AluSx SINE Alu -1 311 1 21 82 0 0 chr9 39764113 39764162 -102507282 + AT_rich Low_complexity Low_complexity 1 49 0 509 239 139 46 chr9 39764390 39764686 -102506758 - MER102b DNA MER1_type -11 330 1 14960 99 24 22 chr9 39764779 39765472 -102505972 + Tigger1 DNA MER2_type 4 694 -1724 2003 150 7 0 chr9 39765472 39765765 -102505679 + AluJo SINE Alu 5 299 -13 14960 99 24 22 chr9 39765765 39766649 -102504795 + Tigger1 DNA MER2_type 694 1589 -829 2540 78 3 0 chr9 39766649 39766955 -102504489 + AluSg1 SINE Alu 1 307 -2 14960 99 24 22 chr9 39766955 39767663 -102503781 + Tigger1 DNA MER2_type 1589 2294 -124 1238 146 15 0 chr9 39767665 39767864 -102503580 - MER46A DNA MER2_type -2 234 33 743 156 0 37 chr9 39767874 39767891 -102503553 + Tigger1 DNA MER2_type 2288 2304 -114 2578 78 3 0 chr9 39767891 39768200 -102503244 - AluSq SINE Alu -3 310 1 743 156 0 37 chr9 39768200 39768317 -102503127 + Tigger1 DNA MER2_type 2304 2417 -1 229 239 239 0 chr9 39768429 39768521 -102502923 - MIR3 SINE MIR -33 175 62 607 290 138 17 chr9 39768539 39768770 -102502674 + MIR SINE MIR 4 262 0 252 364 66 0 chr9 39768842 39768963 -102502481 + MIR SINE MIR 19 147 -61 560 338 54 4 chr9 39769696 39769936 -102501508 - MIR SINE MIR -2 260 9 408 262 28 0 chr9 39771002 39771109 -102500335 - MIR3 SINE MIR -6 202 93 2041 151 7 0 chr9 39771525 39771817 -102499627 + AluJb SINE Alu 1 294 -18 743 127 16 0 chr9 39771822 39771948 -102499496 + GA-rich Low_complexity Low_complexity 1 128 0 806 304 33 28 chr9 39772384 39772775 -102498669 + L1M4 LINE L1 4633 5025 -1121 750 223 73 59 chr9 39773071 39773291 -102498153 - MIR SINE MIR -11 251 29 516 288 85 5 chr9 39773330 39773542 -102497902 - MER112 DNA MER1_type -31 229 1 202 301 249 24 chr9 39773850 39774059 -102497385 - L2 LINE L2 -3 3269 3014 2420 104 0 3 chr9 39774788 39775095 -102496349 - AluSx SINE Alu -4 308 3 334 298 149 41 chr9 39775341 39775656 -102495788 + L2 LINE L2 2924 3272 0 724 143 14 0 chr9 39776284 39776424 -102495020 + GA-rich Low_complexity Low_complexity 3 144 0 2064 134 3 3 chr9 39776823 39777114 -102494330 - AluSx SINE Alu -21 291 1 2247 119 0 10 chr9 39777304 39777614 -102493830 - AluJb SINE Alu -5 307 1 360 327 7 17 chr9 39777662 39777811 -102493633 + MIR SINE MIR 20 164 -64 229 284 59 0 chr9 39778371 39778473 -102492971 + MIR3 SINE MIR 96 203 -5 565 204 64 143 chr9 39778479 39778654 -102492790 + L1MC5 LINE L1 7432 7619 -342 2313 99 0 7 chr9 39778654 39778957 -102492487 + AluSx SINE Alu 1 301 -11 565 204 64 143 chr9 39778957 39779080 -102492364 + L1MC5 LINE L1 7619 7696 -265 1760 172 42 0 chr9 39779080 39779365 -102492079 + AluJo SINE Alu 1 297 -15 565 204 64 143 chr9 39779365 39779442 -102492002 + L1MC5 LINE L1 7696 7778 -183 1394 253 59 5 chr9 39779451 39779839 -102491605 + L1MB8 LINE L1 5770 6178 0 2020 134 43 3 chr9 39779961 39780260 -102491184 + AluSx SINE Alu 1 311 -1 301 315 91 0 chr9 39780876 39781019 -102490425 + MIR3 SINE MIR 29 184 -24 302 304 68 31 chr9 39781181 39781342 -102490102 + MIR SINE MIR 9 175 -87 1016 167 42 23 chr9 39781447 39781662 -102489782 + L1MD1 LINE L1 6021 6239 -3 434 275 77 97 chr9 39781751 39781998 -102489446 + L2 LINE L2 3030 3271 -1 2310 108 7 0 chr9 39782187 39782493 -102488951 + AluSp SINE Alu 1 308 -5 329 210 328 0 chr9 39782832 39782951 -102488493 - L3 LINE CR1 -119 1458 1301 429 70 0 0 chr9 39783904 39783961 -102487483 + (CA)n Simple_repeat Simple_repeat 1 57 0 181 310 50 40 chr9 39783990 39784090 -102487354 + L3 LINE CR1 1357 1457 -120 702 226 159 26 chr9 39784242 39784468 -102486976 - MIR SINE MIR -3 259 4 344 261 194 37 chr9 39784478 39784612 -102486832 - MIR SINE MIR -106 156 2 199 308 60 60 chr9 39784700 39784833 -102486611 + L2 LINE L2 2921 3053 -219 348 133 0 0 chr9 39786861 39786921 -102484523 + (GA)n Simple_repeat Simple_repeat 2 61 0 489 254 0 25 chr9 39787838 39787960 -102483484 + L2 LINE L2 3178 3296 -17 493 286 121 15 chr9 39788212 39788411 -102483033 + MIR SINE MIR 9 228 -34 230 249 0 0 chr9 39788454 39788511 -102482933 + MIR SINE MIR 36 92 -116 182 254 91 0 chr9 39788995 39789050 -102482394 - MIR SINE MIR -113 95 36 319 275 114 8 chr9 39789279 39789410 -102482034 - MIR3 SINE MIR -20 188 44 392 257 124 9 chr9 39789739 39789852 -102481592 - MIR SINE MIR -103 159 34 366 23 0 0 chr9 39790613 39790656 -102480788 + (CA)n Simple_repeat Simple_repeat 2 44 0 1799 175 7 0 chr9 39790991 39791283 -102480161 + AluJo SINE Alu 1 294 -18 760 242 45 6 chr9 39791368 39791546 -102479898 - MIR SINE MIR -70 192 8 1870 163 3 22 chr9 39792311 39792624 -102478820 - AluJb SINE Alu -1 311 5 824 255 27 0 chr9 39792838 39793026 -102478418 + MIR SINE MIR 53 245 -17 1363 142 102 0 chr9 39794475 39794701 -102476743 - AluJo SINE Alu -3 309 61 220 220 0 0 chr9 39794728 39794778 -102476666 + (TTATA)n Simple_repeat Simple_repeat 4 53 0 478 304 82 25 chr9 39795084 39795327 -102476117 - MIR SINE MIR 0 262 6 281 248 70 83 chr9 39796041 39796138 -102475306 - MIR SINE MIR -1 261 164 2335 68 4 0 chr9 39796138 39796447 -102474997 - AluY SINE Alu 0 310 1 281 248 70 83 chr9 39796447 39796505 -102474939 - MIR SINE MIR -98 164 107 226 315 196 0 chr9 39796672 39796764 -102474680 - MIR SINE MIR -150 112 3 917 300 63 28 chr9 39797488 39797818 -102473626 - L3 LINE CR1 -1 1576 1228 2311 99 0 10 chr9 39797818 39798121 -102473323 - AluSg SINE Alu -2 308 9 917 300 63 28 chr9 39798121 39798187 -102473257 - L3 LINE CR1 -349 1228 1166 436 309 60 28 chr9 39798309 39798742 -102472702 - L1MEd LINE L1 -3499 2630 2184 21 0 0 0 chr9 39798824 39798845 -102472599 + AT_rich Low_complexity Low_complexity 1 21 0 3236 220 75 31 chr9 39799219 39799322 -102472122 - L1MCb LINE L1 -4009 2736 2639 1522 119 5 5 chr9 39799322 39799532 -102471912 - AluSg/x SINE Alu -7 303 94 3236 220 75 31 chr9 39799532 39800878 -102470566 - L1MCb LINE L1 -4106 2639 1009 2098 143 3 0 chr9 39800878 39801171 -102470273 + AluJb SINE Alu 1 294 -18 3236 220 75 31 chr9 39801171 39801324 -102470120 - L1MCb LINE L1 -5736 1009 864 294 271 23 45 chr9 39801347 39801480 -102469964 - L1MCb LINE L1 -6292 272 143 * 645 281 68 50 chr9 39801476 39802396 -102469048 - L1MEd LINE L1 -788 1702 653 437 336 35 35 chr9 39802567 39802853 -102468591 - L1MEd LINE L1 -5711 408 123 308 244 64 26 chr9 39802865 39802943 -102468501 - L1MC4 LINE L1 -1334 6708 6628 26 74 0 0 chr9 39803003 39803057 -102468387 + AT_rich Low_complexity Low_complexity 1 54 0 213 94 0 0 chr9 39803318 39803350 -102468094 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 296 292 115 0 chr9 39803514 39803610 -102467834 - MIR3 SINE MIR -11 197 91 208 328 140 35 chr9 39805707 39805878 -102465566 + L2 LINE L2 2617 2805 -509 448 295 79 16 chr9 39806294 39806484 -102464960 - L3 LINE CR1 -2 1575 1374 311 309 151 72 chr9 39806511 39806815 -102464629 - L3 LINE CR1 -343 1234 907 392 317 104 39 chr9 39806884 39807114 -102464330 + MIR SINE MIR 13 257 -5 201 317 38 24 chr9 39807814 39808046 -102463398 + L2 LINE L2 2815 3050 -263 264 167 0 0 chr9 39808885 39808933 -102462511 + (CA)n Simple_repeat Simple_repeat 2 49 0 371 208 158 42 chr9 39809725 39809845 -102461599 - MIR3 SINE MIR -71 137 4 260 340 133 13 chr9 39810912 39811062 -102460382 + MIR3 SINE MIR 36 203 -5 2312 93 0 3 chr9 39811086 39811388 -102460056 + AluY SINE Alu 1 301 -10 2347 105 0 10 chr9 39811394 39811708 -102459736 + AluSq SINE Alu 1 311 -2 482 307 141 18 chr9 39811964 39812459 -102458985 + L2 LINE L2 2766 3310 -3 363 280 65 0 chr9 39812462 39812555 -102458889 + MIR3 SINE MIR 78 176 -32 607 234 43 14 chr9 39814009 39814150 -102457294 - MIR SINE MIR -29 233 89 1374 273 70 18 chr9 39814297 39814741 -102456703 + L1MC4a LINE L1 5488 5954 -1854 261 139 0 0 chr9 39815995 39816038 -102455406 + (CA)n Simple_repeat Simple_repeat 1 43 0 324 138 17 0 chr9 39816790 39816848 -102454596 + AluS SINE Alu 2 60 -248 222 291 101 118 chr9 39817033 39817438 -102454006 - L2 LINE L2 0 3313 2916 200 200 0 0 chr9 39817839 39817884 -102453560 + L2 LINE L2 3017 3061 -211 256 298 36 12 chr9 39818179 39818263 -102453181 - L2 LINE L2 -51 3221 3136 525 281 28 28 chr9 39819355 39819533 -102451911 + MIR3 SINE MIR 2 179 -29 2406 93 0 0 chr9 39819833 39820133 -102451311 + AluSx SINE Alu 1 300 -12 1116 42 0 0 chr9 39820134 39820276 -102451168 + (GGAAA)n Simple_repeat Simple_repeat 4 145 0 1862 143 0 52 chr9 39820672 39820811 -102450633 + AluJo SINE Alu 1 146 -166 2212 121 20 0 chr9 39820811 39821109 -102450335 + AluSx SINE Alu 1 304 -8 1862 143 0 52 chr9 39821109 39821277 -102450167 + AluJo SINE Alu 146 292 -20 694 284 51 9 chr9 39821451 39821666 -102449778 - MIR SINE MIR -17 245 22 416 298 21 35 chr9 39821711 39821852 -102449592 + MIR SINE MIR 118 256 -6 456 234 38 3 chr9 39822205 39822330 -102449114 - MIR SINE MIR -57 151 64 778 252 39 47 chr9 39822372 39822470 -102448974 + MIR SINE MIR 4 101 -161 2405 93 0 0 chr9 39822470 39822772 -102448672 - AluY SINE Alu -9 302 1 778 252 39 47 chr9 39822772 39822931 -102448513 + MIR SINE MIR 101 259 -3 207 245 404 0 chr9 39822944 39823038 -102448406 + L2 LINE L2 3137 3268 -4 192 315 19 0 chr9 39823558 39823612 -102447832 - L2 LINE L2 -14 3258 3204 594 147 120 33 chr9 39824231 39824381 -102447063 - MIR SINE MIR -16 246 84 502 233 58 0 chr9 39824399 39824519 -102446925 - MIR SINE MIR -129 133 7 1621 147 132 7 chr9 39824609 39824881 -102446563 - AluY SINE Alu -5 306 1 260 315 76 33 chr9 39824886 39825070 -102446374 - L2 LINE L2 -254 3018 2827 207 0 0 0 chr9 39825591 39825614 -102445830 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 450 243 17 23 chr9 39826625 39826801 -102444643 - MIR SINE MIR -59 203 32 310 352 62 17 chr9 39826913 39827089 -102444355 - MIR3 SINE MIR -9 199 16 1481 218 50 52 chr9 39827954 39828507 -102442937 + L2 LINE L2 2758 3309 -4 222 274 32 0 chr9 39828839 39828901 -102442543 + MIR SINE MIR 55 118 -144 2110 130 3 0 chr9 39829081 39829381 -102442063 + AluSx SINE Alu 12 312 0 2562 237 65 1 chr9 39830011 39830706 -102440738 + MER20B DNA MER1_type 34 772 -11 1137 114 0 0 chr9 39830712 39830861 -102440583 - AluJb SINE Alu -163 149 1 498 318 33 0 chr9 39831416 39831523 -102439921 + MIR SINE MIR 7 122 -140 2403 78 0 47 chr9 39831523 39831843 -102439601 - AluSq SINE Alu -8 305 1 498 318 33 0 chr9 39831843 39831886 -102439558 + MIR SINE MIR 122 162 -100 444 259 0 0 chr9 39832059 39832167 -102439277 - MIR3 SINE MIR -34 174 67 219 330 53 0 chr9 39832574 39832668 -102438776 - L2 LINE L2 -36 3236 3138 22 70 0 0 chr9 39833153 39833196 -102438248 + GC_rich Low_complexity Low_complexity 1 43 0 31 0 0 0 chr9 39833226 39833257 -102438187 + GC_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr9 39833344 39833365 -102438079 + GC_rich Low_complexity Low_complexity 1 21 0 46 54 0 0 chr9 39833405 39833479 -102437965 + GC_rich Low_complexity Low_complexity 1 74 0 246 331 57 16 chr9 39834072 39834196 -102437248 - MIR SINE MIR -21 241 113 443 313 61 0 chr9 39834314 39834477 -102436967 - MIR SINE MIR -19 243 71 183 299 126 0 chr9 39834583 39834670 -102436774 - MIR3 SINE MIR -53 155 58 180 77 0 0 chr9 39834900 39834926 -102436518 + (CCTG)n Simple_repeat Simple_repeat 2 27 0 200 338 14 0 chr9 39835089 39835160 -102436284 + G-rich Low_complexity Low_complexity 5 76 0 2041 135 0 7 chr9 39835486 39835774 -102435670 + AluJo SINE Alu 21 306 -6 439 286 113 20 chr9 39835889 39836092 -102435352 - MIR SINE MIR 0 262 41 602 216 101 26 chr9 39836402 39836614 -102434830 + MIR SINE MIR 22 261 -1 468 327 78 37 chr9 39836917 39837238 -102434206 - L2 LINE L2 -7 3265 2932 416 318 188 0 chr9 39837228 39837420 -102434024 - MIR SINE MIR 0 262 35 * 365 288 184 46 chr9 39837428 39837775 -102433669 - L2 LINE L2 -385 2929 2535 2149 133 3 0 chr9 39837915 39838216 -102433228 + AluJb SINE Alu 1 302 -10 206 183 232 49 chr9 39838336 39838418 -102433026 - MIR SINE MIR -91 117 21 605 208 78 0 chr9 39838423 39838577 -102432867 - MIR3 SINE MIR -10 198 33 1943 173 92 50 chr9 39839910 39840009 -102431435 + Charlie1b DNA MER1_type 1 94 -2667 737 70 0 0 chr9 39840009 39840109 -102431335 - L1PA8 LINE L1 -3 6169 6070 1943 173 92 50 chr9 39840109 39840511 -102430933 + Charlie1b DNA MER1_type 94 523 0 210 321 117 31 chr9 39840550 39840712 -102430732 - MIR3 SINE MIR -7 201 26 518 236 60 80 chr9 39841791 39841990 -102429454 - Charlie8 DNA MER1_type -2211 206 12 295 223 68 39 chr9 39842747 39842850 -102428594 + MIR3 SINE MIR 79 184 -24 326 281 50 44 chr9 39843316 39843476 -102427968 - MIR SINE MIR -12 250 90 199 212 24 0 chr9 39843910 39843995 -102427449 + GA-rich Low_complexity Low_complexity 1 87 0 447 344 57 16 chr9 39845101 39845348 -102426096 - L3 LINE CR1 -103 1474 1218 261 237 0 17 chr9 39845580 39845639 -102425805 - L2 LINE L2 0 3272 3215 1080 156 21 5 chr9 39845641 39845833 -102425611 + Charlie5 DNA MER1_type 1 195 -2417 1297 158 27 4 chr9 39845842 39846101 -102425343 + Charlie5 DNA MER1_type 2358 2622 0 200 289 0 0 chr9 39846654 39846706 -102424738 + MIR SINE MIR 94 145 -63 637 215 0 7 chr9 39847559 39847694 -102423750 + AluSq/x SINE Alu 2 135 -178 887 284 108 38 chr9 39847756 39848227 -102423217 - L3 LINE CR1 -91 1486 983 240 35 0 0 chr9 39848898 39848927 -102422517 + (T)n Simple_repeat Simple_repeat 1 29 0 243 0 0 0 chr9 39850242 39850269 -102421175 + (A)n Simple_repeat Simple_repeat 1 27 0 584 219 124 55 chr9 39850470 39850644 -102420800 - MIR SINE MIR 0 262 71 2006 122 26 23 chr9 39850644 39850947 -102420497 + AluJo SINE Alu 2 305 -7 584 219 124 55 chr9 39850947 39850973 -102420471 - MIR SINE MIR -191 71 48 380 275 99 24 chr9 39851064 39851233 -102420211 - MIR SINE MIR -62 146 13 362 323 0 0 chr9 39851917 39852010 -102419434 + MIR SINE MIR 40 132 -76 396 327 7 26 chr9 39852546 39852699 -102418745 - MIR3 SINE MIR -32 176 27 21 0 0 0 chr9 39853530 39853551 -102417893 + AT_rich Low_complexity Low_complexity 1 21 0 304 262 5 129 chr9 39853745 39853947 -102417497 + MIR3 SINE MIR 3 179 -29 358 347 28 0 chr9 39853954 39854098 -102417346 + MIR3 SINE MIR 57 204 -4 304 194 0 14 chr9 39854778 39854850 -102416594 - L1ME4a LINE L1 -2 6119 6049 1139 165 0 0 chr9 39854958 39855134 -102416310 - AluSg/x SINE Alu -1 311 136 2169 120 19 7 chr9 39855135 39855443 -102416001 - AluSx SINE Alu 0 312 1 264 233 0 0 chr9 39855447 39855507 -102415937 - L1ME4a LINE L1 -215 5906 5847 915 269 45 12 chr9 39856304 39856546 -102414898 + MIR SINE MIR 13 262 0 1704 122 20 20 chr9 39856632 39856928 -102414516 + L1MA2 LINE L1 6009 6304 0 280 333 0 0 chr9 39857407 39857479 -102413965 - MIR SINE MIR -63 145 74 1875 141 4 4 chr9 39857970 39858240 -102413204 + AluJb SINE Alu 43 312 0 804 242 24 40 chr9 39858320 39858568 -102412876 + Charlie8 DNA MER1_type 26 269 -2148 409 218 53 8 chr9 39859702 39859835 -102411609 + MER113 DNA MER1_type? 28 166 -355 953 121 0 8 chr9 39860057 39860189 -102411255 + FLAM_C SINE Alu 1 131 -12 664 166 37 111 chr9 39860253 39860470 -102410974 + MER102b DNA MER1_type 139 339 -2 265 286 0 0 chr9 39860470 39860532 -102410912 + MER113 DNA MER1_type? 456 517 -4 356 253 11 0 chr9 39861532 39861619 -102409825 - MIR SINE MIR -90 118 31 1286 165 53 47 chr9 39862381 39862669 -102408775 + MER33 DNA MER1_type 1 293 -2292 2519 63 3 3 chr9 39862669 39862969 -102408475 - AluSp SINE Alu -13 300 1 1286 165 53 47 chr9 39862969 39863002 -102408442 + MER33 DNA MER1_type 293 324 0 216 135 0 0 chr9 39863116 39863153 -102408291 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 233 306 188 21 chr9 39864332 39864476 -102406968 - MIR SINE MIR -75 187 20 24 0 0 0 chr9 39864502 39864526 -102406918 + AT_rich Low_complexity Low_complexity 1 24 0 442 267 22 39 chr9 39865084 39865245 -102406199 + MIR SINE MIR 21 183 -60 371 267 27 20 chr9 39866215 39866361 -102405083 + CT-rich Low_complexity Low_complexity 1 147 0 228 320 39 0 chr9 39866949 39867027 -102404417 + MIR SINE MIR 63 143 -65 256 282 100 45 chr9 39871123 39871233 -102400211 + MIR3 SINE MIR 39 154 -54 23 0 0 0 chr9 39874819 39874842 -102396602 + GC_rich Low_complexity Low_complexity 1 23 0 238 253 22 66 chr9 39875324 39875415 -102396029 + MIR3 SINE MIR 117 203 -5 361 275 63 49 chr9 39876872 39877014 -102394430 - MIR3 SINE MIR -14 194 51 305 266 56 70 chr9 39877391 39877534 -102393910 - MIR3 SINE MIR -34 174 34 25 0 0 0 chr9 39878068 39878093 -102393351 + AT_rich Low_complexity Low_complexity 1 25 0 242 303 16 57 chr9 39878714 39878836 -102392608 + MIR3 SINE MIR 54 170 -38 261 0 0 0 chr9 39880689 39880718 -102390726 + (CA)n Simple_repeat Simple_repeat 2 30 0 321 26 0 0 chr9 39881178 39881216 -102390228 + (T)n Simple_repeat Simple_repeat 1 38 0 221 182 18 0 chr9 39887225 39887280 -102384164 + (TA)n Simple_repeat Simple_repeat 2 57 0 357 306 118 6 chr9 39889228 39889398 -102382046 - MER5A DNA MER1_type 0 189 1 2269 121 7 0 chr9 39889756 39890062 -102381382 - AluSx SINE Alu -4 308 1 182 304 80 27 chr9 39890162 39890274 -102381170 - L2 LINE L2 -266 3006 2889 2036 153 0 0 chr9 39890353 39890648 -102380796 - AluJb SINE Alu -17 295 1 272 243 0 93 chr9 39891114 39891221 -102380223 + MIR SINE MIR 102 198 -64 2443 97 0 0 chr9 39891293 39891602 -102379842 - AluSg SINE Alu 0 310 2 213 94 0 0 chr9 39892006 39892038 -102379406 + (CA)n Simple_repeat Simple_repeat 2 33 0 1855 144 32 3 chr9 39892229 39892513 -102378931 + AluJb SINE Alu 1 292 -20 2055 199 22 17 chr9 39892528 39892935 -102378509 - MER47B DNA MER2_type -8 410 2 340 266 195 18 chr9 39893038 39893207 -102378237 - L3 LINE CR1 -76 1501 1303 2247 116 0 0 chr9 39893570 39893862 -102377582 + AluSx SINE Alu 2 293 -19 386 257 40 54 chr9 39894424 39894572 -102376872 - MIR3 SINE MIR -6 202 57 600 252 87 44 chr9 39894601 39894807 -102376637 - MIR SINE MIR -36 226 12 581 287 144 42 chr9 39895506 39895984 -102375460 - L1ME4a LINE L1 -71 6050 5524 318 213 75 43 chr9 39896180 39896274 -102375170 - MIR SINE MIR -109 153 57 492 287 14 14 chr9 39896536 39896679 -102374765 - MIR3 SINE MIR -21 187 45 559 143 0 11 chr9 39896750 39896841 -102374603 - AluJb SINE Alu -39 273 184 935 132 0 59 chr9 39896841 39896993 -102374451 - FLAM_C SINE Alu 0 143 1 232 277 72 0 chr9 39897063 39897146 -102374298 + MER103 DNA DNA 1 89 -77 234 148 34 91 chr9 39898508 39898586 -102372858 + MIR SINE MIR 84 143 -65 232 239 13 138 chr9 39898626 39898785 -102372659 + MER5B DNA MER1_type 40 178 0 406 286 44 59 chr9 39898875 39898974 -102372470 + MIR3 SINE MIR 9 108 -100 2112 130 3 3 chr9 39898974 39899273 -102372171 + AluSx SINE Alu 2 300 -12 406 286 44 59 chr9 39899273 39899376 -102372068 + MIR3 SINE MIR 108 208 0 2521 76 0 0 chr9 39899770 39900071 -102371373 - AluSg SINE Alu -9 301 1 293 157 36 60 chr9 39900217 39900300 -102371144 - L1ME3A LINE L1 -227 5943 5863 1468 163 125 0 chr9 39900499 39900763 -102370681 + AluJb SINE Alu 1 297 -15 192 272 48 78 chr9 39900937 39901040 -102370404 + MIR SINE MIR 96 144 -64 632 258 11 26 chr9 39901370 39901560 -102369884 - MIR3 SINE MIR -6 202 16 365 240 124 41 chr9 39901838 39901959 -102369485 + L2 LINE L2 3142 3272 0 192 296 0 0 chr9 39902524 39902566 -102368878 + MIR SINE MIR 30 71 -137 1097 222 7 58 chr9 39902566 39902759 -102368685 + MIR SINE MIR 2 178 -84 888 193 0 24 chr9 39902759 39902925 -102368519 + FRAM SINE Alu 1 162 -4 1097 222 7 58 chr9 39902925 39903006 -102368438 + MIR SINE MIR 178 262 0 491 264 65 7 chr9 39903008 39903163 -102368281 + L2 LINE L2 2927 3090 -223 245 329 0 0 chr9 39903837 39903910 -102367534 + GA-rich Low_complexity Low_complexity 2 74 0 185 105 0 26 chr9 39903963 39903993 -102367451 + (TA)n Simple_repeat Simple_repeat 1 31 -6 2143 122 7 0 chr9 39903993 39904287 -102367157 - AluSx SINE Alu -16 296 1 185 105 0 26 chr9 39904287 39904294 -102367150 + (TA)n Simple_repeat Simple_repeat 31 37 0 1709 170 14 17 chr9 39904811 39904973 -102366471 - AluJb SINE Alu -19 293 131 216 0 0 0 chr9 39904973 39904997 -102366447 + (TTA)n Simple_repeat Simple_repeat 2 25 0 1709 170 14 17 chr9 39904997 39905128 -102366316 - AluJb SINE Alu -181 131 1 586 226 155 7 chr9 39905260 39905415 -102366029 + MER5A DNA MER1_type 4 181 -8 362 357 133 34 chr9 39905646 39906411 -102365033 + L2 LINE L2 1820 2660 -654 1790 158 3 20 chr9 39906472 39906770 -102364674 - AluJb SINE Alu -19 293 1 957 103 15 29 chr9 39906932 39907068 -102364376 + AluJo SINE Alu 1 134 -178 2127 81 33 4 chr9 39907168 39907477 -102363967 + AluY SINE Alu 1 317 0 1644 195 51 48 chr9 39907661 39907897 -102363547 + MER63B DNA MER1_type 1 235 -827 1663 189 10 16 chr9 39907897 39908204 -102363240 + AluJo SINE Alu 1 305 -7 1644 195 51 48 chr9 39908204 39908256 -102363188 + MER63B DNA MER1_type 235 285 -777 2334 104 0 3 chr9 39908256 39908554 -102362890 - AluSx SINE Alu -13 299 3 1644 195 51 48 chr9 39908554 39908699 -102362745 + MER63B DNA MER1_type 285 436 0 268 319 64 78 chr9 39908721 39909078 -102362366 + L2 LINE L2 2596 2947 -367 853 127 0 15 chr9 39909276 39909410 -102362034 - FLAM_C SINE Alu 0 133 2 492 82 0 124 chr9 39909723 39909755 -102361689 + L1MB3 LINE L1 5826 5860 -323 1496 193 10 43 chr9 39909755 39910060 -102361384 - AluJo SINE Alu -17 295 1 492 82 0 124 chr9 39910060 39910124 -102361320 + L1MB3 LINE L1 5860 5910 -273 1025 170 0 0 chr9 39910152 39910311 -102361133 + AluJb SINE Alu 145 303 -9 1406 170 0 0 chr9 39910311 39910552 -102360892 + L1MB3 LINE L1 5905 6145 -38 968 182 0 12 chr9 39910555 39910720 -102360724 - AluJb SINE Alu -16 296 134 2373 110 0 0 chr9 39910720 39911021 -102360423 - AluSx SINE Alu -11 301 1 252 86 0 0 chr9 39911063 39911098 -102360346 + (A)n Simple_repeat Simple_repeat 1 35 0 630 221 72 67 chr9 39961630 39962162 -102309282 - L1ME LINE L1 -4760 1320 782 1909 140 27 3 chr9 39962381 39962673 -102308771 - AluJb SINE Alu -13 299 1 706 272 194 26 chr9 39962875 39963221 -102308223 + L2 LINE L2 2456 2859 -455 23 54 0 0 chr9 39963740 39963777 -102307667 + AT_rich Low_complexity Low_complexity 1 37 0 452 250 199 19 chr9 39964222 39964378 -102307066 + MIR3 SINE MIR 10 193 -15 981 214 41 19 chr9 39964747 39965267 -102306177 - L1MC4 LINE L1 0 8042 7420 814 121 0 24 chr9 39965438 39965562 -102305882 + AluSq/x SINE Alu 1 121 -191 755 223 112 0 chr9 39966892 39967089 -102304355 - MER58A DNA MER1_type -2 222 4 194 214 24 119 chr9 39968941 39969025 -102302419 - L2 LINE L2 -10 3262 3187 2279 95 10 0 chr9 39969035 39969331 -102302113 + AluSx SINE Alu 1 299 -13 4799 97 0 1 chr9 39969465 39970195 -102301249 - L1P LINE L1 -789 5357 4629 860 158 7 0 chr9 39970290 39970442 -102301002 + MSTD LTR MaLR 1 153 -243 2158 118 0 3 chr9 39970890 39971178 -102300266 - AluSg SINE Alu -23 287 1 472 262 112 54 chr9 39971191 39971485 -102299959 - L1MDb LINE L1 -3580 2960 2650 265 149 0 68 chr9 39971614 39971688 -102299756 + (CCCCCT)n Simple_repeat Simple_repeat 3 71 0 1661 175 22 0 chr9 39971740 39972014 -102299430 - AluJb SINE Alu -32 280 1 1297 201 4 8 chr9 39972249 39972493 -102298951 + AluJo SINE Alu 44 286 -26 353 280 125 15 chr9 39972550 39972750 -102298694 - L1MDb LINE L1 -4583 1957 1736 2379 96 40 6 chr9 39972852 39973206 -102298238 + L1PA8 LINE L1 5799 6164 -8 403 239 79 35 chr9 39973235 39973443 -102298001 - MIR SINE MIR -38 224 4 1726 140 75 4 chr9 39973734 39974013 -102297431 + AluJb SINE Alu 1 299 -13 391 242 44 11 chr9 39974792 39974883 -102296561 - L3 LINE CR1 -1466 111 18 294 340 57 25 chr9 39975272 39975431 -102296013 + MIR3 SINE MIR 34 197 -11 255 265 13 53 chr9 39976258 39976409 -102295035 + GA-rich Low_complexity Low_complexity 3 147 0 2140 66 4 7 chr9 39976512 39976783 -102294661 + AluY SINE Alu 3 272 -39 450 108 0 0 chr9 39976786 39976869 -102294575 + (CAGA)n Simple_repeat Simple_repeat 2 84 0 2422 90 0 3 chr9 39976883 39977195 -102294249 + AluSq SINE Alu 1 311 -2 697 120 5 68 chr9 39977507 39977698 -102293746 + (TCCCC)n Simple_repeat Simple_repeat 1 179 0 950 218 63 108 chr9 39977759 39978124 -102293320 - L1MDb LINE L1 -5163 1377 1039 2138 109 0 3 chr9 39978124 39978409 -102293035 - AluSq SINE Alu -29 284 1 950 218 63 108 chr9 39978409 39978525 -102292919 - L1MDb LINE L1 -5501 1039 919 376 354 135 29 chr9 39979038 39979349 -102292095 - L1MDb LINE L1 -6192 348 5 2370 69 3 16 chr9 39979457 39979762 -102291682 + AluSp SINE Alu 1 301 -12 207 318 0 0 chr9 39980097 39980182 -102291262 + T-rich Low_complexity Low_complexity 1 85 0 450 308 144 16 chr9 39980840 39981090 -102290354 - L3 LINE CR1 -1 1576 1295 2534 52 0 7 chr9 39981969 39982276 -102289168 - AluY SINE Alu -6 305 1 2291 108 0 0 chr9 39982533 39982829 -102288615 + AluSx SINE Alu 1 296 -16 3350 137 136 91 chr9 39983259 39983831 -102287613 - L1MC3 LINE L1 -15 7770 7075 300 270 0 14 chr9 39983831 39983905 -102287539 - MLT1F1 LTR MaLR -450 117 45 3350 137 136 91 chr9 39983905 39984120 -102287324 - L1MC3 LINE L1 -710 7075 6871 35 24 0 0 chr9 39984128 39984170 -102287274 + AT_rich Low_complexity Low_complexity 1 42 0 243 0 0 0 chr9 39984170 39984197 -102287247 + (ATTG)n Simple_repeat Simple_repeat 2 28 0 2155 99 3 0 chr9 39984199 39984481 -102286963 - AluSq SINE Alu -30 283 1 761 149 16 0 chr9 39984502 39984623 -102286821 - FLAM_C SINE Alu -10 123 1 192 77 0 0 chr9 39984623 39984649 -102286795 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 961 134 13 6 chr9 39984697 39984854 -102286590 - L1MC3 LINE L1 -923 6862 6705 1758 179 7 3 chr9 39984902 39985199 -102286245 - AluJb SINE Alu -14 298 1 272 265 122 0 chr9 39985237 39985335 -102286109 + MIR SINE MIR 104 213 -49 1406 192 13 45 chr9 39985491 39985803 -102285641 - AluJb SINE Alu -8 304 3 2137 69 31 17 chr9 39986090 39986379 -102285065 + AluY SINE Alu 1 293 -18 24 0 0 0 chr9 39986482 39986506 -102284938 + AT_rich Low_complexity Low_complexity 1 24 0 196 303 131 20 chr9 39986875 39986974 -102284470 - L2 LINE L2 -6 3266 3157 254 290 70 40 chr9 39987404 39987504 -102283940 + L2 LINE L2 3156 3258 -14 2341 113 0 0 chr9 39990187 39990498 -102280946 - AluSx SINE Alu -1 311 1 24 0 0 0 chr9 39991353 39991377 -102280067 + AT_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr9 39992207 39992232 -102279212 + AT_rich Low_complexity Low_complexity 1 25 0 221 359 66 50 chr9 39993356 39993537 -102277907 + L2 LINE L2 2872 3055 -217 425 139 14 0 chr9 39994363 39994435 -102277009 - AluSg/x SINE Alu -154 158 86 1345 174 5 0 chr9 39994435 39994654 -102276790 - AluJb SINE Alu -92 220 1 238 247 108 0 chr9 39994852 39994945 -102276499 - L1P LINE L1 -723 5428 5326 209 303 0 0 chr9 39995125 39995191 -102276253 - L2 LINE L2 0 3272 3207 502 335 49 33 chr9 39995255 39995500 -102275944 + MIR SINE MIR 8 256 -6 2210 70 0 14 chr9 39995795 39996119 -102275325 + AluY SINE Alu 1 320 0 1336 158 15 50 chr9 39996211 39996495 -102274949 + AluJo SINE Alu 33 307 0 227 322 82 7 chr9 39996566 39996712 -102274732 - L2 LINE L2 -223 3049 2893 186 330 22 22 chr9 39996743 39996834 -102274610 - L2 LINE L2 -498 2816 2726 1532 193 98 0 chr9 39996899 39997215 -102274229 - MER7A DNA MER2_type 0 346 2 1551 153 26 71 chr9 39997329 39997637 -102273807 + AluJb SINE Alu 5 298 -14 24 0 0 0 chr9 39997696 39997720 -102273724 + AT_rich Low_complexity Low_complexity 1 24 0 261 130 19 37 chr9 39998107 39998161 -102273283 + LTR23 LTR ERV1 1 53 -384 21 0 0 0 chr9 39998161 39998182 -102273262 + AT_rich Low_complexity Low_complexity 1 21 0 816 204 42 0 chr9 39998188 39998330 -102273114 - AluJ SINE Alu -36 276 129 60 37 0 0 chr9 39998332 39998413 -102273031 + AT_rich Low_complexity Low_complexity 1 81 0 757 169 0 0 chr9 39998424 39998548 -102272896 - AluJ SINE Alu -185 127 4 797 170 144 111 chr9 39998559 39998697 -102272747 - AluJo SINE Alu -22 290 158 2232 80 3 0 chr9 39998697 39998984 -102272460 - AluSp SINE Alu -23 290 3 797 170 144 111 chr9 39998984 39999116 -102272328 - AluJo SINE Alu -154 158 11 952 167 14 113 chr9 39999129 39999422 -102272022 + LTR23 LTR ERV1 42 305 -132 2275 61 61 0 chr9 39999422 39999716 -102271728 + AluSq SINE Alu 1 312 -1 334 186 12 93 chr9 39999760 39999846 -102271598 + AluJ/FLAM SINE Alu 7 85 -217 799 146 14 7 chr9 39999847 39999991 -102271453 + LTR23 LTR ERV1 293 437 0 191 271 57 14 chr9 40001324 40001394 -102270050 + MIR3 SINE MIR 125 197 -11 211 297 14 0 chr9 40001429 40001503 -102269941 + MIR3 SINE MIR 10 84 -124 265 267 44 33 chr9 40001609 40001699 -102269745 + MIR3 SINE MIR 111 201 -7 2129 104 3 0 chr9 40002884 40003181 -102268263 + AluSg SINE Alu 1 298 -12 334 353 38 23 chr9 40003208 40003341 -102268103 + MIR3 SINE MIR 31 165 -43 426 39 0 0 chr9 40003417 40003469 -102267975 + (TG)n Simple_repeat Simple_repeat 2 53 0 224 339 28 28 chr9 40004665 40004774 -102266670 - L2 LINE L2 0 3272 3164 1818 138 14 0 chr9 40005095 40005371 -102266073 - AluSx SINE Alu -26 286 7 1621 181 0 31 chr9 40005384 40005677 -102265767 - AluJo SINE Alu -20 292 9 2473 63 7 0 chr9 40006214 40006515 -102264929 + AluY SINE Alu 1 303 -8 2301 98 3 3 chr9 40006519 40006826 -102264618 + AluSx SINE Alu 1 307 -5 420 235 121 6 chr9 40007527 40007693 -102263751 - L1MC5 LINE L1 -58 7903 7719 919 152 0 0 chr9 40007764 40007896 -102263548 + MER2 DNA MER2_type 4 135 -210 1145 87 54 27 chr9 40007903 40008012 -102263432 + MER30 DNA MER1_type 3 120 -110 2204 83 10 14 chr9 40008012 40008302 -102263142 + AluSg SINE Alu 1 289 -21 1145 87 54 27 chr9 40008302 40008376 -102263068 + MER30 DNA MER1_type 120 191 -39 490 160 76 25 chr9 40008389 40008508 -102262936 + MER2 DNA MER2_type 136 260 -85 1111 178 0 0 chr9 40008527 40008712 -102262732 - AluSq SINE Alu -9 304 120 34 0 0 0 chr9 40008712 40008746 -102262698 + AT_rich Low_complexity Low_complexity 1 34 0 2303 101 0 0 chr9 40008746 40009044 -102262400 - AluSx SINE Alu -14 298 1 944 123 0 0 chr9 40009049 40009179 -102262265 - AluSq SINE Alu -183 130 1 807 212 103 35 chr9 40009252 40009563 -102261881 - L1MC5 LINE L1 -320 7641 7310 2366 100 0 3 chr9 40009870 40010181 -102261263 - AluSp SINE Alu -3 310 1 357 191 11 11 chr9 40010182 40010271 -102261173 - L1MC5 LINE L1 -1876 5932 5844 203 167 42 42 chr9 40010346 40010394 -102261050 + L2 LINE L2 3266 3313 0 23 33 0 0 chr9 40010436 40010466 -102260978 + AT_rich Low_complexity Low_complexity 1 30 0 194 0 0 37 chr9 40011552 40011579 -102259865 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1323 141 31 86 chr9 40011640 40011930 -102259514 - AluJb SINE Alu -38 274 1 638 161 45 0 chr9 40011941 40012079 -102259365 - FLAM_C SINE Alu 0 143 1 21 0 0 0 chr9 40013850 40013871 -102257573 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 40013985 40014006 -102257438 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr9 40016801 40016837 -102254607 + AT_rich Low_complexity Low_complexity 1 36 0 22 88 0 0 chr9 40018984 40019041 -102252403 + AT_rich Low_complexity Low_complexity 1 57 0 23 54 0 0 chr9 40019330 40019367 -102252077 + AT_rich Low_complexity Low_complexity 1 37 0 25 0 0 0 chr9 40022009 40022034 -102249410 + AT_rich Low_complexity Low_complexity 1 25 0 22 35 0 0 chr9 40022280 40022309 -102249135 + AT_rich Low_complexity Low_complexity 1 29 0 283 312 72 24 chr9 40023344 40023469 -102247975 - L2 LINE L2 0 3272 3142 2197 167 21 12 chr9 40025817 40026236 -102245208 + L1M2 LINE L1 5299 5721 -591 21 36 0 0 chr9 40027549 40027577 -102243867 + AT_rich Low_complexity Low_complexity 1 28 0 714 71 10 0 chr9 40028354 40028452 -102242992 + HY3 scRNA scRNA 2 100 -1 1708 149 0 28 chr9 40028457 40028739 -102242705 + AluJo SINE Alu 14 287 -25 2161 117 3 0 chr9 40028821 40029121 -102242323 + AluSx SINE Alu 1 301 -11 181 312 0 75 chr9 40029122 40029215 -102242229 - MIR3 SINE MIR -28 180 95 513 179 0 0 chr9 40029423 40029507 -102241937 + AluJb SINE Alu 42 125 -187 1409 217 88 45 chr9 40029772 40030306 -102241138 - L1ME1 LINE L1 -26 6209 5653 928 131 0 8 chr9 40030318 40030448 -102240996 + AluSq/x SINE Alu 1 129 -184 1643 106 0 0 chr9 40030448 40030656 -102240788 + AluSc SINE Alu 1 208 -101 1196 130 12 0 chr9 40030789 40030958 -102240486 + AluSg/x SINE Alu 142 312 0 541 226 99 13 chr9 40030965 40031674 -102239770 - L1ME1 LINE L1 -593 5642 4725 1963 128 0 34 chr9 40031702 40031984 -102239460 + AluSx SINE Alu 1 274 -38 602 26 0 13 chr9 40031984 40032061 -102239383 + (TAGA)n Simple_repeat Simple_repeat 1 76 0 1963 128 0 34 chr9 40032061 40032074 -102239370 + AluSx SINE Alu 274 286 -26 232 91 45 0 chr9 40032098 40032142 -102239302 + A-rich Low_complexity Low_complexity 3 48 0 1163 235 61 0 chr9 40032142 40032406 -102239038 - AluJb SINE Alu -30 282 3 1784 230 133 26 chr9 40032407 40033212 -102238232 - L1ME1 LINE L1 -1483 4732 3842 1668 103 49 0 chr9 40033212 40033475 -102237969 - MER75 DNA T2_type 0 514 239 1776 231 82 40 chr9 40033489 40033657 -102237787 - L1ME1 LINE L1 -2652 3563 3404 2253 73 0 7 chr9 40033657 40033944 -102237500 + AluSg SINE Alu 1 285 -25 1776 231 82 40 chr9 40033944 40034533 -102236911 - L1ME1 LINE L1 -2811 3404 2774 2845 256 70 30 chr9 40034616 40034813 -102236631 - L1ME1 LINE L1 -5148 1248 1060 558 167 167 0 chr9 40034813 40034927 -102236517 - FLAM_C SINE Alu 0 133 1 2845 256 70 30 chr9 40034927 40035896 -102235548 - L1ME1 LINE L1 -5336 1060 35 847 161 0 0 chr9 40036159 40036283 -102235161 + FLAM_C SINE Alu 1 124 -19 314 274 80 18 chr9 40036319 40036432 -102235012 - L2 LINE L2 -16 3256 3137 23 0 0 0 chr9 40036490 40036513 -102234931 + AT_rich Low_complexity Low_complexity 1 23 0 1567 185 22 29 chr9 40037323 40037637 -102233807 + AluJo SINE Alu 1 312 0 1401 155 66 12 chr9 40038963 40039221 -102232223 - AluJo SINE Alu -1 311 40 21 36 0 0 chr9 40041349 40041377 -102230067 + AT_rich Low_complexity Low_complexity 1 28 0 251 339 102 0 chr9 40041446 40041573 -102229871 + MIR SINE MIR 56 195 -67 2069 115 13 26 chr9 40041573 40041878 -102229566 + AluSx SINE Alu 1 301 -11 239 174 65 0 chr9 40041887 40041933 -102229511 - L1MC/D LINE L1 -669 5573 5525 1889 113 84 0 chr9 40042398 40042673 -102228771 + AluSx SINE Alu 1 298 -14 1232 175 21 117 chr9 40042965 40043291 -102228153 + AluYb8 SINE Alu 1 295 -23 23 33 0 0 chr9 40043415 40043445 -102227999 + AT_rich Low_complexity Low_complexity 1 30 0 243 0 0 0 chr9 40043598 40043625 -102227819 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2229 70 14 0 chr9 40043627 40043914 -102227530 - AluY SINE Alu -20 291 1 233 281 16 8 chr9 40044081 40044202 -102227242 + (TA)n Simple_repeat Simple_repeat 2 123 0 189 206 0 0 chr9 40044494 40044528 -102226916 - MER5B DNA MER1_type -50 128 95 1973 124 18 0 chr9 40044601 40044911 -102226533 + AluSg SINE Alu 1 315 0 2499 142 78 8 chr9 40045180 40045665 -102225779 + L1MC3 LINE L1 7244 7762 -23 275 205 18 27 chr9 40045951 40046063 -102225381 + GA-rich Low_complexity Low_complexity 2 112 0 180 0 0 0 chr9 40046731 40046751 -102224693 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 333 200 0 43 chr9 40047599 40047669 -102223775 + L2 LINE L2 3246 3312 -1 23 33 0 0 chr9 40048607 40048637 -102222807 + AT_rich Low_complexity Low_complexity 1 30 0 1693 189 81 10 chr9 40048961 40049379 -102222065 + L1MB7 LINE L1 5694 6141 -43 30 0 0 0 chr9 40049380 40049410 -102222034 + AT_rich Low_complexity Low_complexity 1 30 0 762 157 9 0 chr9 40049410 40049525 -102221919 - FLAM_C SINE Alu -17 116 1 2075 120 3 46 chr9 40049882 40050207 -102221237 - AluSx SINE Alu -1 311 1 748 232 7 0 chr9 40050382 40050533 -102220911 + FAM SINE Alu 1 152 -33 255 192 41 14 chr9 40051089 40051162 -102220282 + MER116 DNA Mariner 6 80 0 583 249 135 21 chr9 40051237 40051430 -102220014 - MIR SINE MIR -42 220 6 297 0 0 0 chr9 40052229 40052262 -102219182 + (TTG)n Simple_repeat Simple_repeat 1 33 0 1427 195 90 44 chr9 40052993 40053428 -102218016 - MLT1C LTR MaLR 0 467 13 243 0 0 0 chr9 40053464 40053491 -102217953 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 21 0 0 0 chr9 40053739 40053760 -102217684 + AT_rich Low_complexity Low_complexity 1 21 0 2220 136 3 12 chr9 40054752 40055090 -102216354 - MER1B DNA MER1_type -1 336 2 463 177 73 0 chr9 40055310 40055406 -102216038 + MER2 DNA MER2_type 243 345 0 321 178 39 132 chr9 40055548 40055677 -102215767 - L1MDa LINE L1 -4940 1600 1484 508 152 0 20 chr9 40055678 40055777 -102215667 - AluJ/FRAM SINE Alu 0 312 216 1265 181 0 44 chr9 40055877 40056126 -102215318 + AluJo SINE Alu 75 312 0 204 301 21 48 chr9 40056239 40056474 -102214970 - L2 LINE L2 -270 3002 2726 1808 165 58 0 chr9 40056539 40056867 -102214577 - MER7A DNA MER2_type 0 346 2 246 62 0 0 chr9 40056925 40056957 -102214487 + (T)n Simple_repeat Simple_repeat 1 32 0 1664 169 13 35 chr9 40056995 40057308 -102214136 + AluJb SINE Alu 1 306 -6 333 0 0 0 chr9 40057308 40057345 -102214099 + (TA)n Simple_repeat Simple_repeat 1 37 0 24 0 0 0 chr9 40057365 40057389 -102214055 + AT_rich Low_complexity Low_complexity 1 24 0 884 110 0 0 chr9 40057958 40058076 -102213368 - FLAM_C SINE Alu -15 118 1 809 207 37 24 chr9 40058081 40058245 -102213199 - AluJ SINE Alu -18 294 129 49 32 0 0 chr9 40058245 40058308 -102213136 + AT_rich Low_complexity Low_complexity 1 63 0 311 227 0 0 chr9 40058317 40058383 -102213061 - AluJo SINE Alu -2 300 235 667 242 0 25 chr9 40058383 40058540 -102212904 - AluJo SINE Alu -159 153 1 992 176 50 38 chr9 40058540 40058801 -102212643 + LTR23 LTR ERV1 42 305 -132 463 168 30 50 chr9 40058801 40058902 -102212542 + AluJ/FLAM SINE Alu 1 99 -213 679 123 34 41 chr9 40058907 40059053 -102212391 + LTR23 LTR ERV1 293 437 0 276 338 61 20 chr9 40060498 40060646 -102210798 + MIR3 SINE MIR 31 184 -24 257 263 25 38 chr9 40060654 40060734 -102210710 + MIR3 SINE MIR 123 201 -7 2325 59 3 3 chr9 40061473 40061762 -102209682 + AluSp SINE Alu 1 289 -24 21 0 0 0 chr9 40062192 40062213 -102209231 + AT_rich Low_complexity Low_complexity 1 21 0 363 349 30 8 chr9 40062223 40062355 -102209089 + MIR3 SINE MIR 31 165 -43 268 369 8 76 chr9 40063636 40063872 -102207572 - L2 LINE L2 0 3272 3053 747 147 42 14 chr9 40064055 40064198 -102207246 - FRAM SINE Alu -11 165 19 818 185 115 20 chr9 40064740 40064940 -102206504 - MER58A DNA MER1_type -2 222 4 202 366 74 14 chr9 40065978 40066194 -102205250 + L2 LINE L2 2157 2385 -929 305 207 126 46 chr9 40068051 40068138 -102203306 - L2 LINE L2 -10 3262 3169 511 200 8 46 chr9 40068201 40068331 -102203113 - FLAM_A SINE Alu -1 141 17 240 267 12 0 chr9 40069291 40069377 -102202067 - L1MC5 LINE L1 -58 7903 7817 1601 151 60 10 chr9 40069389 40069688 -102201756 + MER2 DNA MER2_type 1 314 -31 324 0 0 0 chr9 40069702 40069738 -102201706 + (TG)n Simple_repeat Simple_repeat 1 36 0 614 197 163 34 chr9 40069790 40070115 -102201329 - L1MC5 LINE L1 -285 7676 7310 2290 81 0 3 chr9 40070433 40070766 -102200678 - AluSq SINE Alu 0 332 1 2477 69 0 0 chr9 40070845 40071136 -102200308 - AluSg SINE Alu -19 291 1 2119 122 0 29 chr9 40071291 40071603 -102199841 - AluSx SINE Alu -9 303 1 979 194 75 20 chr9 40072529 40072730 -102198714 - AluJb SINE Alu 0 312 101 370 302 8 31 chr9 40072776 40072905 -102198539 - MIR3 SINE MIR -26 182 57 598 251 82 43 chr9 40072934 40073141 -102198303 - MIR SINE MIR -36 226 12 34 0 0 0 chr9 40073596 40073630 -102197814 + AT_rich Low_complexity Low_complexity 1 34 0 1428 123 5 0 chr9 40073630 40073834 -102197610 - AluSg/x SINE Alu -22 290 86 499 318 80 4 chr9 40074286 40074560 -102196884 - L1ME LINE L1 -303 5818 5524 326 243 75 37 chr9 40074743 40074850 -102196594 - MIR SINE MIR -95 167 57 307 348 28 0 chr9 40075063 40075204 -102196240 - MIR3 SINE MIR -4 204 60 1767 155 23 19 chr9 40075232 40075542 -102195902 + AluJb SINE Alu 1 311 -1 1834 130 12 78 chr9 40075613 40075944 -102195500 - AluJb SINE Alu -3 309 1 192 77 0 0 chr9 40076220 40076246 -102195198 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 195 411 0 0 chr9 40076415 40076471 -102194973 - L2 LINE L2 -88 3184 3129 1790 150 41 7 chr9 40076523 40076816 -102194628 + AluSx SINE Alu 1 303 -9 218 109 18 109 chr9 40077609 40077664 -102193780 + MIR SINE MIR 86 135 -73 1963 110 43 3 chr9 40077769 40078051 -102193393 + AluSg SINE Alu 1 293 -17 180 231 154 96 chr9 40078096 40078200 -102193244 - MER5A DNA MER1_type -61 128 19 389 311 57 11 chr9 40078295 40078472 -102192972 + MIR3 SINE MIR 9 193 -15 233 177 83 146 chr9 40079037 40079100 -102192344 - L1ME3A LINE L1 -218 5952 5895 1990 139 7 7 chr9 40079100 40079409 -102192035 - AluSx SINE Alu -3 309 1 233 177 83 146 chr9 40079409 40079441 -102192003 - L1ME3A LINE L1 -275 5895 5863 1723 185 0 0 chr9 40079641 40079933 -102191511 + AluJb SINE Alu 1 292 -20 256 250 0 0 chr9 40080109 40080165 -102191279 + MIR SINE MIR 97 152 -56 592 228 21 52 chr9 40080539 40080732 -102190712 - MIR3 SINE MIR -6 202 16 381 277 46 39 chr9 40081007 40081137 -102190307 + L2 LINE L2 3142 3272 0 204 286 0 20 chr9 40081701 40081748 -102189696 + MIR SINE MIR 26 71 -137 1071 230 7 68 chr9 40081748 40081941 -102189503 + MIR SINE MIR 2 174 -88 956 206 0 0 chr9 40081941 40082106 -102189338 + FRAM SINE Alu 1 165 -1 1071 230 7 68 chr9 40082106 40082190 -102189254 + MIR SINE MIR 174 262 0 500 283 73 17 chr9 40082172 40082349 -102189095 + L2 LINE L2 2908 3094 -219 * 2149 97 7 32 chr9 40083047 40083357 -102188087 + AluSq SINE Alu 1 302 -11 599 200 8 8 chr9 40083511 40083636 -102187808 + MER63 DNA MER1_type 745 869 -193 1546 174 19 0 chr9 40083644 40083908 -102187536 + AluJo SINE Alu 1 269 -43 216 182 0 0 chr9 40083909 40083953 -102187491 + (CAAA)n Simple_repeat Simple_repeat 3 46 0 497 132 0 0 chr9 40084016 40084084 -102187360 - AluSc SINE Alu -112 197 130 613 217 0 0 chr9 40084084 40084204 -102187240 + MER63 DNA MER1_type 941 1060 0 270 327 59 68 chr9 40084226 40084657 -102186787 + L2 LINE L2 2596 3017 -255 2102 114 0 10 chr9 40084720 40085009 -102186435 - AluSq SINE Alu -27 286 1 454 305 29 29 chr9 40085685 40085859 -102185585 - MIR3 SINE MIR -3 205 32 2024 124 0 0 chr9 40085923 40086240 -102185204 - AluSg SINE Alu 0 317 1 1734 184 96 25 chr9 40086334 40086454 -102184990 + MLT1C LTR MaLR 1 111 -356 2064 144 0 0 chr9 40086454 40086752 -102184692 - AluSx SINE Alu -14 298 1 1734 184 96 25 chr9 40086752 40087067 -102184377 + MLT1C LTR MaLR 111 467 0 986 269 123 19 chr9 40087605 40087980 -102183464 - LTR33 LTR ERVL -6 515 102 1479 199 30 149 chr9 40087983 40088652 -102182792 + L1 LINE L1 4031 4619 -1527 3616 205 40 19 chr9 40088655 40089469 -102181975 + L1MB5 LINE L1 4421 5216 -958 1916 168 0 0 chr9 40089469 40089772 -102181672 + AluJb SINE Alu 1 303 -9 3616 205 40 19 chr9 40089772 40090321 -102181123 + L1MB5 LINE L1 5216 5826 -348 1509 206 31 0 chr9 40090321 40090607 -102180837 + AluJo SINE Alu 11 305 -7 3616 205 40 19 chr9 40090607 40090635 -102180809 + L1MB5 LINE L1 5826 5852 -322 292 256 49 12 chr9 40090735 40090817 -102180627 + L2 LINE L2 2809 2893 -420 27 0 0 0 chr9 40090817 40090844 -102180600 + AT_rich Low_complexity Low_complexity 1 27 0 2392 78 0 0 chr9 40090896 40091189 -102180255 - AluY SINE Alu -18 293 1 508 308 142 19 chr9 40091206 40091524 -102179920 + L2 LINE L2 2911 3267 -46 204 213 0 0 chr9 40091828 40091889 -102179555 + T-rich Low_complexity Low_complexity 1 61 0 2596 52 3 0 chr9 40093596 40093906 -102177538 + AluY SINE Alu 1 311 0 860 171 88 78 chr9 40093934 40094139 -102177305 + MER20 DNA MER1_type 13 219 0 21 57 0 0 chr9 40094159 40094194 -102177250 + AT_rich Low_complexity Low_complexity 1 35 0 249 83 0 0 chr9 40095845 40095881 -102175563 + (TG)n Simple_repeat Simple_repeat 2 37 0 29 78 0 0 chr9 40096465 40096529 -102174915 + AT_rich Low_complexity Low_complexity 1 64 0 2151 106 3 0 chr9 40098242 40098549 -102172895 + AluSq SINE Alu 1 308 0 21 36 0 0 chr9 40098755 40098783 -102172661 + AT_rich Low_complexity Low_complexity 1 28 0 2255 91 7 7 chr9 40100374 40100672 -102170772 + AluSx SINE Alu 1 298 -14 189 0 0 0 chr9 40100792 40100813 -102170631 + (T)n Simple_repeat Simple_repeat 1 21 0 613 146 0 39 chr9 40100826 40100929 -102170515 + AluSc SINE Alu 194 292 -17 782 228 97 10 chr9 40101028 40101234 -102170210 + MER58A DNA MER1_type 1 224 0 2234 112 0 3 chr9 40102108 40102403 -102169041 + AluSx SINE Alu 1 294 -18 185 250 125 0 chr9 40103721 40103777 -102167667 - L2 LINE L2 0 3272 3210 335 269 86 21 chr9 40103797 40103983 -102167461 + L1MB4 LINE L1 4382 4579 -1567 450 0 0 0 chr9 40104178 40104228 -102167216 + (TG)n Simple_repeat Simple_repeat 2 51 0 219 139 0 0 chr9 40104844 40104880 -102166564 + (TATG)n Simple_repeat Simple_repeat 2 37 0 237 186 0 0 chr9 40104904 40104947 -102166497 + L1MB4 LINE L1 5561 5603 -518 349 137 0 0 chr9 40104951 40105002 -102166442 + MER66A LTR ERV1 287 337 -141 2021 202 28 12 chr9 40105025 40105520 -102165924 + L1MB4 LINE L1 5676 6178 -2 910 274 58 66 chr9 40106271 40106757 -102164687 + L1ME1 LINE L1 35 516 -5880 2286 234 97 42 chr9 40106956 40108599 -102162845 + L1ME1 LINE L1 3312 4863 -1372 2333 70 7 3 chr9 40108599 40108897 -102162547 + AluY SINE Alu 1 299 -12 2286 234 97 42 chr9 40108897 40109643 -102161801 + L1ME1 LINE L1 4863 5935 -300 1802 145 36 10 chr9 40109643 40109947 -102161497 - AluSx SINE Alu 0 312 1 2286 234 97 42 chr9 40109947 40110227 -102161217 + L1ME1 LINE L1 5935 6198 -37 1311 181 86 38 chr9 40110227 40110519 -102160925 - AluJb SINE Alu -6 306 1 2171 111 7 3 chr9 40110686 40110984 -102160460 - AluSx SINE Alu -12 300 2 5446 162 99 5 chr9 40111176 40112274 -102159170 - Tigger3b DNA MER2_type -1 1230 29 27 0 0 0 chr9 40112436 40112463 -102158981 + AT_rich Low_complexity Low_complexity 1 27 0 281 229 195 34 chr9 40112478 40112596 -102158848 + L2 LINE L2 3177 3313 0 1784 140 6 40 chr9 40112774 40113096 -102158348 - AluSx SINE Alu -1 311 1 236 222 37 19 chr9 40114158 40114212 -102157232 + MER5B DNA MER1_type 4 58 -120 181 288 27 0 chr9 40114289 40114362 -102157082 + MER5B DNA MER1_type 98 172 -6 811 190 117 6 chr9 40114362 40114541 -102156903 + MER58 DNA MER1_type 1 199 -142 651 246 0 0 chr9 40114956 40115094 -102156350 - Tigger5 DNA MER2_type 0 2323 2186 2058 106 0 48 chr9 40115707 40116019 -102155425 - AluSx SINE Alu -15 297 1 317 311 135 46 chr9 40116115 40116375 -102155069 - MLT1K LTR MaLR -163 425 143 26 30 0 0 chr9 40116570 40116603 -102154841 + AT_rich Low_complexity Low_complexity 1 33 0 2355 148 22 61 chr9 40116789 40117296 -102154148 - L1MA6 LINE L1 0 6300 5814 380 232 80 14 chr9 40117307 40117445 -102153999 + CT-rich Low_complexity Low_complexity 5 151 0 2142 116 7 0 chr9 40117449 40117743 -102153701 - AluSc SINE Alu -13 296 1 2223 126 42 5 chr9 40117744 40118124 -102153320 - L1MA6 LINE L1 -475 5825 5432 23 0 0 0 chr9 40118188 40118211 -102153233 + AT_rich Low_complexity Low_complexity 1 23 0 2223 58 0 11 chr9 40118274 40118549 -102152895 - AluY SINE Alu -39 272 1 21 36 0 0 chr9 40120730 40120758 -102150686 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr9 40122177 40122199 -102149245 + AT_rich Low_complexity Low_complexity 1 22 0 28 95 0 0 chr9 40122792 40122876 -102148568 + AT_rich Low_complexity Low_complexity 1 84 0 201 147 0 0 chr9 40126100 40126134 -102145310 + (A)n Simple_repeat Simple_repeat 1 34 0 21 57 0 0 chr9 40126286 40126321 -102145123 + AT_rich Low_complexity Low_complexity 1 35 0 203 195 24 24 chr9 40127569 40127610 -102143834 + L2 LINE L2 3032 3072 -200 208 326 0 42 chr9 40127737 40127832 -102143612 - L2 LINE L2 -430 2884 2794 435 298 42 46 chr9 40127997 40128235 -102143209 - L2 LINE L2 -882 2432 2196 324 149 0 15 chr9 40128484 40128551 -102142893 - L1MA8 LINE L1 -3 6288 6223 340 241 98 54 chr9 40128610 40128722 -102142722 - MER8 DNA MER2_type -122 117 1 1670 182 26 2 chr9 40128722 40129064 -102142380 - L1MA8 LINE L1 -28 6143 5871 1435 179 57 37 chr9 40129480 40129797 -102141647 + AluJo SINE Alu 1 323 0 189 369 0 36 chr9 40130258 40130342 -102141102 + L3 LINE CR1 1478 1558 -19 1952 99 68 10 chr9 40131312 40131604 -102139840 - AluSc SINE Alu 0 309 1 422 341 115 10 chr9 40131818 40132026 -102139418 + MIR SINE MIR 2 231 -31 321 267 0 27 chr9 40132059 40132134 -102139310 - MER81 DNA DNA 0 114 42 2209 125 3 3 chr9 40132146 40132457 -102138987 - AluSq SINE Alu -2 311 1 23 33 0 0 chr9 40133025 40133055 -102138389 + AT_rich Low_complexity Low_complexity 1 30 0 24 32 0 0 chr9 40135727 40135758 -102135686 + AT_rich Low_complexity Low_complexity 1 31 0 2166 69 0 11 chr9 40137154 40137429 -102134015 + AluY SINE Alu 1 272 -39 22 0 0 0 chr9 40137493 40137515 -102133929 + AT_rich Low_complexity Low_complexity 1 22 0 664 183 44 0 chr9 40137579 40137716 -102133728 + L1M2 LINE L1 5432 5574 -726 328 188 12 12 chr9 40137878 40137958 -102133486 - HAL1 LINE L1 -296 2211 2132 1990 155 3 0 chr9 40138001 40138304 -102133140 - AluSx SINE Alu -8 304 1 229 200 15 31 chr9 40138305 40138370 -102133074 - HAL1 LINE L1 -464 2043 1980 * 572 262 14 0 chr9 40138369 40138514 -102132930 - HAL1 LINE L1 -939 1568 1422 741 241 0 21 chr9 40138574 40138765 -102132679 - AluJo SINE Alu -14 298 112 1109 127 0 0 chr9 40138928 40139094 -102132350 + AluSg/x SINE Alu 144 309 -1 198 91 0 0 chr9 40139103 40139136 -102132308 + (TA)n Simple_repeat Simple_repeat 1 33 0 676 191 211 10 chr9 40140836 40141030 -102130414 - MER46A DNA MER2_type -3 233 1 2360 174 193 25 chr9 40141161 40141763 -102129681 - MER44D DNA MER2_type -2 703 1 1355 233 38 27 chr9 40142433 40142798 -102128646 + Charlie1a DNA MER1_type 3 371 -1084 2037 187 150 35 chr9 40142814 40143067 -102128377 + Charlie1a DNA MER1_type 793 1016 -1745 2553 130 142 6 chr9 40143067 40143561 -102127883 - MER34B LTR ERV1 -2 563 3 2037 187 150 35 chr9 40143561 40143901 -102127543 + Charlie1a DNA MER1_type 1016 1454 -1 1077 152 21 26 chr9 40143904 40144095 -102127349 + MSTB LTR MaLR 221 410 -16 255 285 0 114 chr9 40144311 40144434 -102127010 + MIR SINE MIR 86 194 -68 229 366 42 7 chr9 40144493 40144622 -102126822 - L2 LINE L2 -731 2583 2447 1933 116 29 32 chr9 40144622 40144933 -102126511 + AluJb SINE Alu 1 310 -2 229 366 42 7 chr9 40144933 40144945 -102126499 - L2 LINE L2 -867 2447 2437 4726 208 114 39 chr9 40145256 40146727 -102124717 - MER45R DNA AcHobo 0 1581 1 242 224 342 0 chr9 40150259 40150411 -102121033 + MIR SINE MIR 47 250 -12 21 0 0 0 chr9 40150449 40150470 -102120974 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr9 40150778 40150801 -102120643 + AT_rich Low_complexity Low_complexity 1 23 0 1852 185 0 0 chr9 40152739 40153031 -102118413 + AluJo SINE Alu 1 292 -20 1371 155 91 38 chr9 40153568 40153707 -102117737 - AluJb SINE Alu -33 279 149 2590 55 0 0 chr9 40153707 40154015 -102117429 - AluY SINE Alu -3 308 1 1371 155 91 38 chr9 40154015 40154140 -102117304 - AluJb SINE Alu -163 149 1 320 276 86 43 chr9 40154242 40154358 -102117086 + L2 LINE L2 3143 3263 -9 2497 60 0 0 chr9 40154575 40154873 -102116571 - AluY SINE Alu -13 298 1 532 324 84 44 chr9 40155086 40155528 -102115916 - L2 LINE L2 -230 3083 2606 1670 165 22 4 chr9 40155528 40155795 -102115649 + AluJb SINE Alu 40 311 -1 532 324 84 44 chr9 40155795 40155965 -102115479 - L2 LINE L2 -707 2606 2444 854 154 256 38 chr9 40156141 40156407 -102115037 + MER33 DNA MER1_type 1 324 0 2217 100 30 0 chr9 40156559 40156858 -102114586 + AluSq SINE Alu 1 308 -5 22 0 0 0 chr9 40156953 40156975 -102114469 + AT_rich Low_complexity Low_complexity 1 22 0 1467 184 124 121 chr9 40157089 40157735 -102113709 + L1MC5 LINE L1 7065 7716 -245 2013 135 0 0 chr9 40157735 40158023 -102113421 - AluSx SINE Alu -24 288 1 1467 184 124 121 chr9 40158023 40158222 -102113222 + L1MC5 LINE L1 7716 7913 -48 251 204 41 0 chr9 40158569 40158618 -102112826 - L1ME3A LINE L1 -75 6095 6045 228 67 0 0 chr9 40158645 40158675 -102112769 + (A)n Simple_repeat Simple_repeat 1 30 0 691 251 17 11 chr9 40158948 40159167 -102112277 - L1ME3 LINE L1 -315 5855 5656 939 174 87 5 chr9 40159174 40159369 -102112075 + MER58A DNA MER1_type 1 211 -13 2504 70 0 0 chr9 40159374 40159675 -102111769 + AluY SINE Alu 1 301 -10 518 249 46 24 chr9 40159850 40160123 -102111321 - L1ME3 LINE L1 -747 5399 5164 295 174 0 0 chr9 40160186 40160232 -102111212 - MER75 DNA T2_type 0 514 469 2280 122 3 0 chr9 40160480 40160791 -102110653 - AluSx SINE Alu 0 312 1 489 296 160 21 chr9 40160796 40161227 -102110217 - L1ME3 LINE L1 -953 5193 4697 981 259 114 42 chr9 40161584 40161786 -102109658 - L1ME LINE L1 -344 5818 5632 2297 98 0 25 chr9 40161786 40162103 -102109341 - AluSq SINE Alu -4 309 1 981 259 114 42 chr9 40162103 40162556 -102108888 - L1ME LINE L1 -530 5632 5128 489 283 133 17 chr9 40162556 40162736 -102108708 + MIR SINE MIR 56 256 -6 234 286 78 0 chr9 40163342 40163419 -102108025 + L1ME LINE L1 347 429 -5987 587 196 0 9 chr9 40163511 40163623 -102107821 + FLAM_C SINE Alu 1 111 -32 211 0 88 0 chr9 40163633 40163667 -102107777 + A-rich Low_complexity Low_complexity 3 39 0 643 329 118 0 chr9 40163667 40163956 -102107488 + L1ME LINE L1 443 765 -5651 933 211 132 103 chr9 40163964 40164163 -102107281 + L1ME LINE L1 902 1094 -5332 210 37 0 0 chr9 40164163 40164190 -102107254 + (TG)n Simple_repeat Simple_repeat 2 28 0 933 211 132 103 chr9 40164190 40164218 -102107226 + L1ME LINE L1 1094 1120 -5306 700 266 0 6 chr9 40164218 40164376 -102107068 - FAM SINE Alu -18 157 1 933 211 132 103 chr9 40164376 40165038 -102106406 + L1ME LINE L1 1120 1829 -4597 663 144 68 25 chr9 40165056 40165174 -102106270 + AluSq/x SINE Alu 3 125 -188 275 270 109 67 chr9 40165190 40165687 -102105757 + L1ME LINE L1 1781 2365 -4061 800 180 0 0 chr9 40165729 40165851 -102105593 + FLAM_C SINE Alu 1 122 -21 23 0 0 0 chr9 40165851 40165874 -102105570 + AT_rich Low_complexity Low_complexity 1 23 0 1097 214 108 77 chr9 40165942 40166027 -102105417 + L1ME LINE L1 2599 2680 -3746 2118 83 47 0 chr9 40166027 40166304 -102105140 + AluY SINE Alu 3 292 -19 1097 214 108 77 chr9 40166304 40166727 -102104717 + L1ME LINE L1 2680 3123 -3303 405 156 52 42 chr9 40166727 40166823 -102104621 + L1ME LINE L1 3067 3163 -3263 576 227 0 0 chr9 40166913 40167023 -102104421 - AluJ SINE Alu -4 308 199 232 249 70 49 chr9 40167023 40167208 -102104236 + L1MEc LINE L1 1823 2011 -4385 1362 136 0 0 chr9 40167274 40167465 -102103979 - AluJ SINE Alu -118 194 4 746 132 62 7 chr9 40168312 40168456 -102102988 + L1MB2 LINE L1 6013 6164 -7 2425 75 0 7 chr9 40168474 40168779 -102102665 + AluY SINE Alu 1 303 -8 269 185 74 13 chr9 40168786 40168978 -102102466 + AluJo SINE Alu 48 290 -12 198 0 0 0 chr9 40169025 40169047 -102102397 + (T)n Simple_repeat Simple_repeat 1 22 0 389 290 69 8 chr9 40171924 40172055 -102099389 - L2 LINE L2 0 3313 3175 401 273 45 80 chr9 40172331 40172532 -102098912 + MIR SINE MIR 5 196 -66 1700 174 47 3 chr9 40172532 40172831 -102098613 + AluJb SINE Alu 1 312 0 401 273 45 80 chr9 40172831 40172893 -102098551 + MIR SINE MIR 196 259 -3 1805 164 3 7 chr9 40173763 40174061 -102097383 + AluJo SINE Alu 1 297 -15 203 171 0 0 chr9 40174075 40174116 -102097328 + (TAGA)n Simple_repeat Simple_repeat 1 41 0 3033 277 106 23 chr9 40174275 40174906 -102096538 + L2 LINE L2 1759 2337 -976 2331 93 0 3 chr9 40174906 40175216 -102096228 - AluSg SINE Alu -1 309 1 3033 277 106 23 chr9 40175216 40176010 -102095434 + L2 LINE L2 2337 3312 -1 4486 191 42 29 chr9 40176051 40176141 -102095303 + Looper DNA T2_type 1 88 -1470 1646 190 0 14 chr9 40176141 40176436 -102095008 + AluJb SINE Alu 1 291 -21 4486 191 42 29 chr9 40176436 40177434 -102094010 + Looper DNA T2_type 88 1103 -455 2301 81 6 28 chr9 40177440 40177760 -102093684 - AluSp SINE Alu 0 313 1 1003 181 167 0 chr9 40177785 40178061 -102093383 + Looper DNA T2_type 1230 1551 -7 571 239 227 27 chr9 40178164 40178569 -102092875 + HAL1 LINE L1 2018 2503 -4 478 134 0 24 chr9 40181788 40181870 -102089574 + MADE1 DNA Mariner 1 80 0 1014 204 83 45 chr9 40182492 40182647 -102088797 - AluJo SINE Alu -38 274 103 423 0 0 0 chr9 40182647 40182694 -102088750 + (TG)n Simple_repeat Simple_repeat 2 48 0 1014 204 83 45 chr9 40182694 40182802 -102088642 - AluJo SINE Alu -209 103 1 226 385 125 0 chr9 40183056 40183160 -102088284 + L2 LINE L2 3147 3263 -9 616 148 10 0 chr9 40184047 40184148 -102087296 - MSTA LTR MaLR -326 102 1 1606 225 28 5 chr9 40184152 40184547 -102086897 + L1ME2 LINE L1 5750 6153 -11 371 269 117 21 chr9 40185122 40185267 -102086177 - MIR3 SINE MIR -6 202 44 1249 206 13 8 chr9 40185620 40185858 -102085586 - MER8 DNA MER2_type 0 239 1 1671 166 7 10 chr9 40187090 40187380 -102084064 + AluJb SINE Alu 9 297 -15 537 262 64 42 chr9 40187647 40187847 -102083597 - MIR SINE MIR -30 232 32 2344 90 3 3 chr9 40188909 40189221 -102082223 + AluSq SINE Alu 1 312 -1 2381 88 3 0 chr9 40189422 40189729 -102081715 - AluSp SINE Alu -5 308 1 2225 93 3 13 chr9 40190138 40190438 -102081006 + AluY SINE Alu 1 297 -14 489 316 66 13 chr9 40190536 40190688 -102080756 + MIR3 SINE MIR 28 187 -21 181 352 0 0 chr9 40190694 40190748 -102080696 - L3 LINE CR1 -147 1430 1377 364 320 34 6 chr9 40190891 40191069 -102080375 - L3 LINE CR1 -291 1286 1104 2132 98 0 3 chr9 40191824 40192135 -102079309 - AluSx SINE Alu 0 310 1 2356 87 3 0 chr9 40192220 40192529 -102078915 - AluSg SINE Alu 0 310 1 2230 110 10 3 chr9 40192542 40192850 -102078594 - AluSx SINE Alu 0 312 3 582 265 96 26 chr9 40193658 40193888 -102077556 - L1ME LINE L1 -481 5640 5395 616 203 0 24 chr9 40194400 40194475 -102076969 + FLAM_A SINE Alu 12 84 -227 2220 93 0 7 chr9 40194475 40194764 -102076680 + AluSc SINE Alu 11 297 -12 616 203 0 24 chr9 40194764 40194811 -102076633 + FLAM_A SINE Alu 84 131 -180 404 384 49 26 chr9 40195102 40195368 -102076076 + L2 LINE L2 357 628 -2686 1909 157 10 0 chr9 40195407 40195713 -102075731 + AluSx SINE Alu 1 309 -3 375 200 55 36 chr9 40196254 40196364 -102075080 - MIR SINE MIR -73 189 78 1350 126 0 45 chr9 40196525 40196747 -102074697 + AluJo SINE Alu 92 303 -9 1996 125 26 3 chr9 40197173 40197477 -102073967 - AluSx SINE Alu -1 311 1 480 348 28 7 chr9 40198053 40198194 -102073250 - L2 LINE L2 0 3272 3129 381 103 0 0 chr9 40198346 40198404 -102073040 - L1MD1 LINE L1 -13 6229 6172 659 172 0 39 chr9 40198404 40198532 -102072912 + FLAM_C SINE Alu 3 125 -18 24 32 0 0 chr9 40198662 40198693 -102072751 + AT_rich Low_complexity Low_complexity 1 31 0 1807 163 142 16 chr9 40199312 40199692 -102071752 + MSTA LTR MaLR 1 428 0 647 194 8 22 chr9 40200398 40200532 -102070912 + FLAM_A SINE Alu 2 133 0 24 0 0 0 chr9 40201251 40201275 -102070169 + AT_rich Low_complexity Low_complexity 1 24 0 1980 130 0 46 chr9 40201806 40202129 -102069315 - AluSx SINE Alu -4 308 1 1098 161 0 0 chr9 40202220 40202394 -102069050 - AluSx SINE Alu -138 174 1 21 0 0 0 chr9 40202638 40202659 -102068785 + AT_rich Low_complexity Low_complexity 1 21 0 184 327 0 18 chr9 40202715 40202770 -102068674 + L3 LINE CR1 1384 1437 -140 249 210 185 70 chr9 40202900 40203057 -102068387 + HAL1 LINE L1 1399 1573 -934 696 214 0 0 chr9 40203201 40203332 -102068112 + FLAM_A SINE Alu 2 132 -1 22 0 0 0 chr9 40203344 40203366 -102068078 + AT_rich Low_complexity Low_complexity 1 22 0 255 274 45 38 chr9 40203621 40203778 -102067666 + L1ME4a LINE L1 5158 5315 -831 287 301 50 81 chr9 40203827 40203992 -102067452 + L1ME4a LINE L1 5663 5832 -289 1774 102 8 4 chr9 40203992 40204237 -102067207 + AluSq SINE Alu 44 289 -24 287 301 50 81 chr9 40204237 40204400 -102067044 + L1ME4a LINE L1 5832 5978 -143 2086 94 0 91 chr9 40204400 40204730 -102066714 + AluSx SINE Alu 1 300 -12 287 301 50 81 chr9 40204730 40204822 -102066622 + L1ME4a LINE L1 5978 6071 -50 2693 250 72 17 chr9 40204827 40205196 -102066248 - L1MC/D LINE L1 -743 5403 5056 1776 162 17 0 chr9 40205196 40205492 -102065952 - AluJb SINE Alu -11 301 1 2693 250 72 17 chr9 40205492 40205844 -102065600 - L1MC/D LINE L1 -1090 5056 4686 2173 122 0 0 chr9 40205844 40206147 -102065297 - AluSx SINE Alu -9 303 1 2693 250 72 17 chr9 40206147 40206430 -102065014 - L1MC/D LINE L1 -1460 4686 4420 2442 84 0 0 chr9 40206746 40207057 -102064387 - AluY SINE Alu 0 311 1 707 179 15 22 chr9 40207064 40207198 -102064246 - FLAM_C SINE Alu 0 133 1 1617 206 3 6 chr9 40207252 40207563 -102063881 + AluJo SINE Alu 1 310 -2 764 110 0 0 chr9 40208030 40208139 -102063305 + HY1 scRNA scRNA 3 111 -1 832 243 108 0 chr9 40208736 40208950 -102062494 - MIR SINE MIR -20 242 6 23 68 0 0 chr9 40215428 40215472 -102055972 + AT_rich Low_complexity Low_complexity 1 44 0 21 0 0 0 chr9 40216347 40216368 -102055076 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 40219593 40219614 -102051830 + AT_rich Low_complexity Low_complexity 1 21 0 377 194 0 0 chr9 40220709 40220776 -102050668 - U6 snRNA snRNA -1 106 40 475 316 99 28 chr9 40222186 40222398 -102049046 + MIR SINE MIR 7 233 -29 21 0 0 0 chr9 40222806 40222827 -102048617 + AT_rich Low_complexity Low_complexity 1 21 0 185 108 27 0 chr9 40224231 40224268 -102047176 + (CACCC)n Simple_repeat Simple_repeat 4 41 0 2877 246 89 25 chr9 40228261 40228458 -102042986 - L2 LINE L2 0 3313 3130 228 35 0 0 chr9 40228458 40228487 -102042957 + (TTGG)n Simple_repeat Simple_repeat 3 31 0 2877 246 89 25 chr9 40228487 40229572 -102041872 - L2 LINE L2 -183 3130 1941 554 247 0 41 chr9 40229578 40229724 -102041720 - MIR SINE MIR -71 191 52 228 258 56 67 chr9 40230293 40230382 -102041062 + L2 LINE L2 3221 3308 -5 1191 191 60 0 chr9 40230634 40230885 -102040559 - MER58B DNA MER1_type 0 341 76 736 163 0 16 chr9 40230885 40231008 -102040436 + FLAM_C SINE Alu 2 122 -11 482 338 108 37 chr9 40231181 40231726 -102039718 + L2 LINE L2 2732 3313 0 472 288 82 65 chr9 40231808 40232114 -102039330 + L2 LINE L2 1742 2052 -1262 1946 131 28 0 chr9 40232299 40232589 -102038855 + AluSx SINE Alu 1 298 -14 282 29 0 0 chr9 40232814 40232849 -102038595 + (GTTTG)n Simple_repeat Simple_repeat 5 39 0 2126 119 0 0 chr9 40232862 40233156 -102038288 - AluSp SINE Alu -19 294 1 1538 179 28 3 chr9 40233253 40233543 -102037901 + AluJb SINE Alu 1 297 -15 1598 154 3 64 chr9 40233547 40233858 -102037586 + AluJb SINE Alu 1 292 -20 438 100 62 75 chr9 40234249 40234329 -102037115 + MADE1 DNA Mariner 2 80 0 636 324 149 30 chr9 40234644 40235197 -102036247 + L2 LINE L2 1890 2376 -938 2051 103 0 4 chr9 40235197 40235531 -102035913 - AluSg SINE Alu 0 333 1 636 324 149 30 chr9 40235531 40235856 -102035588 + L2 LINE L2 2376 2874 -440 2254 94 0 0 chr9 40236644 40236941 -102034503 - AluSx SINE Alu -15 297 1 2230 104 0 9 chr9 40236969 40237285 -102034159 - AluSq SINE Alu 0 313 1 297 350 49 7 chr9 40238027 40238170 -102033274 + MIR3 SINE MIR 22 170 -38 1523 158 0 8 chr9 40238207 40238460 -102032984 - AluJb SINE Alu -61 251 1 2084 96 10 29 chr9 40239365 40239678 -102031766 - AluSq SINE Alu -6 307 1 663 239 174 53 chr9 40239773 40240129 -102031315 + L1 LINE L1 3092 3490 -2656 740 204 0 15 chr9 40240129 40240266 -102031178 + AluJo SINE Alu 2 136 -176 24 0 0 0 chr9 40240513 40240537 -102030907 + AT_rich Low_complexity Low_complexity 1 24 0 1025 233 14 5 chr9 40242472 40242687 -102028757 + MER8 DNA MER2_type 23 239 0 402 243 86 7 chr9 40242734 40242874 -102028570 + L1ME4a LINE L1 5969 6119 -2 198 0 0 0 chr9 40245069 40245091 -102026353 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 818 153 0 0 chr9 40245091 40245209 -102026235 - FLAM_C SINE Alu -24 119 2 466 260 148 48 chr9 40246667 40246998 -102024446 - L1ME LINE L1 -313 5808 5445 828 159 48 0 chr9 40247232 40247358 -102024086 + MER20 DNA MER1_type 87 218 -1 2193 99 3 3 chr9 40247978 40248281 -102023163 - AluSg SINE Alu -7 303 1 485 248 64 55 chr9 40248306 40248508 -102022936 - LTR16C LTR ERVL -65 426 223 917 183 12 95 chr9 40248655 40248896 -102022548 + AluJo SINE Alu 1 221 -91 745 159 0 0 chr9 40249046 40249159 -102022285 - FLAM_C SINE Alu -29 114 2 1779 122 70 0 chr9 40249652 40249939 -102021505 - AluSx SINE Alu -5 307 1 2063 127 0 0 chr9 40250100 40250407 -102021037 + AluSg SINE Alu 1 307 -3 280 240 164 0 chr9 40250599 40250703 -102020741 + MER96 DNA MER1_type? 53 173 -2 213 237 0 0 chr9 40250761 40250799 -102020645 + MIR SINE MIR 40 77 -131 1636 149 3 88 chr9 40250863 40251205 -102020239 + AluSq SINE Alu 1 313 0 2194 76 3 7 chr9 40251544 40251833 -102019611 + AluSx SINE Alu 1 288 -24 30 0 0 0 chr9 40251833 40251863 -102019581 + AT_rich Low_complexity Low_complexity 1 30 0 287 196 128 122 chr9 40251921 40252069 -102019375 - MLT1H LTR MaLR -127 422 274 * 333 212 92 41 chr9 40252041 40252162 -102019282 - MLT1H LTR MaLR -379 170 41 368 257 53 35 chr9 40252511 40252624 -102018820 + MIR3 SINE MIR 45 159 -49 204 40 0 0 chr9 40252701 40252726 -102018718 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 1870 142 0 4 chr9 40252726 40253007 -102018437 - AluSx SINE Alu -32 280 1 1684 142 17 37 chr9 40253009 40253305 -102018139 - AluJb SINE Alu -22 290 1 614 311 56 38 chr9 40254082 40254478 -102016966 + MLT1K LTR MaLR 176 578 -10 199 238 0 0 chr9 40254565 40254607 -102016837 + L2 LINE L2 3018 3059 -213 22 88 0 0 chr9 40254686 40254743 -102016701 + AT_rich Low_complexity Low_complexity 1 57 0 307 283 204 0 chr9 40254751 40254864 -102016580 + L2 LINE L2 3133 3268 -4 1646 164 3 35 chr9 40254940 40255252 -102016192 + AluJb SINE Alu 11 312 0 302 243 14 14 chr9 40255258 40255328 -102016116 + AluJ/FLAM SINE Alu 2 71 -231 1606 166 20 20 chr9 40255435 40255737 -102015707 - AluJo SINE Alu -6 306 5 1536 159 9 56 chr9 40255750 40256070 -102015374 - AluJb SINE Alu -7 305 1 305 80 20 0 chr9 40257946 40257996 -102013448 - L1MB2 LINE L1 0 6171 6121 2211 106 0 3 chr9 40258000 40258303 -102013141 - AluSq SINE Alu -11 302 1 2089 102 7 7 chr9 40258517 40258811 -102012633 + AluSg SINE Alu 1 294 -16 1753 170 3 0 chr9 40258822 40259110 -102012334 + AluJo SINE Alu 1 289 -23 25 0 0 0 chr9 40259110 40259135 -102012309 + AT_rich Low_complexity Low_complexity 1 25 0 304 299 0 35 chr9 40259210 40259297 -102012147 + HAL1b LINE L1 1209 1292 -56 2137 157 32 19 chr9 40259328 40259703 -102011741 - MLT1B LTR MaLR -10 380 1 1749 134 51 0 chr9 40259732 40259851 -102011593 + AluSx SINE Alu 1 112 -200 477 0 0 0 chr9 40259851 40259904 -102011540 + (TAAA)n Simple_repeat Simple_repeat 1 53 0 1749 134 51 0 chr9 40259904 40260059 -102011385 + AluSx SINE Alu 112 289 -23 811 225 84 47 chr9 40260359 40260742 -102010702 - MLT1J2 LTR MaLR -1 445 31 263 115 173 0 chr9 40260860 40260912 -102010532 - HsTC2 DNA Tc2 -1835 63 3 600 298 114 20 chr9 40261134 40261537 -102009907 + L1ME LINE L1 5267 5707 -414 469 185 68 117 chr9 40261556 40261694 -102009750 - HAL1 LINE L1 0 2507 2383 1668 184 3 3 chr9 40261694 40261998 -102009446 - AluJb SINE Alu -8 304 1 469 185 68 117 chr9 40261998 40262081 -102009363 - HAL1 LINE L1 -124 2383 2297 1434 213 3 0 chr9 40262209 40262510 -102008934 - AluSx SINE Alu -10 302 1 567 269 14 0 chr9 40262575 40262720 -102008724 - HAL1 LINE L1 -939 1568 1422 999 197 0 0 chr9 40262776 40262959 -102008485 - AluJo SINE Alu -10 302 120 257 0 30 0 chr9 40263018 40263051 -102008393 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 1409 202 7 7 chr9 40263169 40263451 -102007993 + AluJo SINE Alu 19 300 -12 1494 189 0 53 chr9 40263628 40263776 -102007668 + AluJo SINE Alu 1 124 -188 2001 94 0 36 chr9 40263776 40264083 -102007361 + AluY SINE Alu 1 296 -15 1494 189 0 53 chr9 40264083 40264256 -102007188 + AluJo SINE Alu 124 305 -7 575 264 45 75 chr9 40264261 40264526 -102006918 + L2 LINE L2 3057 3313 0 879 237 42 78 chr9 40265056 40265310 -102006134 - LTR8 LTR ERV1 -2 689 450 1783 169 0 0 chr9 40265310 40265605 -102005839 - AluSx SINE Alu -7 305 11 879 237 42 78 chr9 40265605 40265709 -102005735 - LTR8 LTR ERV1 -241 450 344 1284 206 4 4 chr9 40265854 40266106 -102005338 - AluJb SINE Alu -60 252 1 713 194 15 110 chr9 40266124 40266387 -102005057 - HAL1 LINE L1 -146 2361 2124 1910 153 3 0 chr9 40266424 40266725 -102004719 - AluSx SINE Alu -10 302 1 228 200 15 31 chr9 40266726 40266791 -102004653 - HAL1 LINE L1 -464 2043 1980 * 550 264 21 0 chr9 40266790 40266934 -102004510 - HAL1 LINE L1 -939 1568 1422 1070 180 0 0 chr9 40266990 40267173 -102004271 - AluJo SINE Alu -10 302 120 257 0 30 0 chr9 40267232 40267265 -102004179 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 1409 202 7 7 chr9 40267383 40267665 -102003779 + AluJo SINE Alu 19 300 -12 327 287 88 34 chr9 40267665 40267804 -102003640 + L1ME LINE L1 5682 5825 -345 1616 174 0 53 chr9 40267842 40267990 -102003454 + AluJo SINE Alu 1 124 -188 2165 75 0 33 chr9 40267990 40268296 -102003148 + AluY SINE Alu 1 296 -15 1616 174 0 53 chr9 40268296 40268469 -102002975 + AluJo SINE Alu 124 305 -7 575 264 45 75 chr9 40268474 40268739 -102002705 + L2 LINE L2 3057 3313 0 2737 165 50 88 chr9 40269268 40269519 -102001925 - LTR8 LTR ERV1 -1 690 431 2199 109 3 0 chr9 40269519 40269823 -102001621 - AluSx SINE Alu -4 308 4 2737 165 50 88 chr9 40269823 40270257 -102001187 - LTR8 LTR ERV1 -260 431 31 2222 77 27 7 chr9 40270257 40270556 -102000888 - AluSq SINE Alu -8 305 1 2737 165 50 88 chr9 40270556 40270586 -102000858 - LTR8 LTR ERV1 -660 31 1 192 212 0 0 chr9 40270801 40270834 -102000610 + MIR SINE MIR 156 188 -74 249 253 84 0 chr9 40270892 40270975 -102000469 - L1ME LINE L1 -346 5775 5686 1645 195 115 72 chr9 40270981 40271596 -101999848 - LTR48B LTR ERV1 -2 642 1 1818 166 159 86 chr9 40271691 40271740 -101999704 - LTR24C LTR ERV1 -2 633 589 2005 119 0 32 chr9 40271740 40272052 -101999392 + AluSx SINE Alu 1 302 -10 1818 166 159 86 chr9 40272052 40272569 -101998875 - LTR24C LTR ERV1 -46 589 26 1334 69 148 10 chr9 40272739 40272941 -101998503 - MER30 DNA MER1_type 0 230 1 1943 141 7 0 chr9 40273745 40274049 -101997395 - AluJb SINE Alu -6 306 1 1863 55 59 52 chr9 40274260 40274531 -101996913 + AluSx SINE Alu 1 273 -39 330 212 54 56 chr9 40274556 40274680 -101996764 - MIR SINE MIR -36 226 101 450 198 62 77 chr9 40275143 40275297 -101996147 + MIR SINE MIR 30 192 -51 190 231 0 111 chr9 40275418 40275526 -101995918 - L2 LINE L2 -156 3116 3021 1274 169 4 0 chr9 40275710 40275935 -101995509 - AluJo SINE Alu 0 312 87 839 250 169 52 chr9 40275966 40276686 -101994758 - L2 LINE L2 0 3313 2494 207 385 52 0 chr9 40277064 40277238 -101994206 - L2 LINE L2 -508 2806 2624 619 284 39 39 chr9 40277859 40278116 -101993328 + LTR16A1 LTR ERVL 201 457 0 215 163 0 61 chr9 40278394 40278443 -101993001 + MIR SINE MIR 102 147 -61 232 323 39 31 chr9 40278915 40279042 -101992402 + MIR SINE MIR 18 145 -63 1521 206 47 23 chr9 40279393 40279737 -101991707 - MSTD LTR MaLR 0 396 45 997 148 0 0 chr9 40279737 40279912 -101991532 - AluSp SINE Alu 0 311 137 257 152 87 0 chr9 40279916 40279962 -101991482 - MSTD LTR MaLR -378 50 1 275 187 101 122 chr9 40279972 40280111 -101991333 + MIR SINE MIR 47 182 -80 209 245 29 11 chr9 40280485 40280579 -101990865 + MIR SINE MIR 46 145 -63 562 276 36 0 chr9 40280638 40280832 -101990612 + MIR SINE MIR 18 219 -43 312 294 119 25 chr9 40280895 40281096 -101990348 + L2 LINE L2 2831 3050 -222 302 241 131 105 chr9 40281320 40281511 -101989933 - L2 LINE L2 0 3313 3118 1805 124 4 0 chr9 40281521 40281826 -101989618 + AluSx SINE Alu 58 310 -2 477 221 151 70 chr9 40281916 40282088 -101989356 + MER5A DNA MER1_type 4 189 0 966 277 78 0 chr9 40282121 40282417 -101989027 + MER58B DNA MER1_type 23 341 0 215 280 0 67 chr9 40282418 40282493 -101988951 - MIR3 SINE MIR -49 159 90 668 214 46 23 chr9 40282582 40282755 -101988689 + MLT1G3 LTR MaLR 154 330 -200 424 301 49 0 chr9 40283363 40283486 -101987958 + MIR SINE MIR 52 180 -82 625 244 184 5 chr9 40283561 40283762 -101987682 + MIR SINE MIR 13 249 -13 212 194 0 104 chr9 40284001 40284068 -101987376 - MIR SINE MIR -72 136 77 694 277 35 27 chr9 40284527 40284787 -101986657 - MIR SINE MIR 0 262 1 198 305 84 38 chr9 40284787 40285046 -101986398 - L2 LINE L2 -824 2490 2220 1506 164 56 31 chr9 40285174 40285460 -101985984 - AluJo SINE Alu -19 293 1 35 0 0 0 chr9 40285466 40285501 -101985943 + AT_rich Low_complexity Low_complexity 1 35 0 2332 102 3 6 chr9 40285512 40285825 -101985619 - AluSx SINE Alu 0 312 1 1080 213 28 44 chr9 40286010 40286259 -101985185 - AluJo SINE Alu -67 245 1 1918 146 36 7 chr9 40286329 40286630 -101984814 + AluJb SINE Alu 1 310 -2 1386 281 57 5 chr9 40286643 40287131 -101984313 - L1MC4a LINE L1 -234 5928 5383 1927 151 0 7 chr9 40287132 40287452 -101983992 - AluSx SINE Alu 0 322 5 338 227 0 0 chr9 40287459 40287525 -101983919 + MER2 DNA MER2_type 280 345 0 190 327 91 50 chr9 40287860 40288059 -101983385 + L2 LINE L2 2770 2976 -338 1396 220 102 9 chr9 40288574 40288997 -101982447 - MLT1C LTR MaLR 0 467 6 305 232 20 71 chr9 40290003 40290102 -101981342 + MIR3 SINE MIR 109 202 -6 1002 86 0 0 chr9 40290635 40290763 -101980681 + FLAM_C SINE Alu 1 128 -5 1862 141 58 10 chr9 40290790 40291081 -101980363 + AluJo SINE Alu 1 305 -7 230 263 0 18 chr9 40291308 40291365 -101980079 - L2 LINE L2 0 3272 3217 377 355 25 0 chr9 40291447 40291568 -101979876 - L2 LINE L2 -13 3259 3136 1676 152 40 18 chr9 40292102 40292402 -101979042 + AluJb SINE Alu 1 306 0 248 365 56 81 chr9 40292501 40292822 -101978622 - L2 LINE L2 -85 3187 2875 219 191 191 29 chr9 40292904 40292972 -101978472 + MIR SINE MIR 114 192 -70 1629 177 11 4 chr9 40293067 40293338 -101978106 + AluJo SINE Alu 23 295 -17 2351 95 0 3 chr9 40293424 40293720 -101977724 + AluY SINE Alu 1 295 -16 1759 154 149 0 chr9 40293924 40294267 -101977177 - MLT2C1 LTR ERVL -3 394 1 284 375 59 0 chr9 40294539 40294691 -101976753 + L3 LINE CR1 1345 1505 -72 244 231 70 141 chr9 40295396 40295595 -101975849 - MIR3 SINE MIR -19 189 5 397 270 115 7 chr9 40296085 40296233 -101975211 - MIR3 SINE MIR -28 180 17 332 298 120 56 chr9 40296809 40297185 -101974259 + L2 LINE L2 2852 3251 -21 366 311 8 0 chr9 40297516 40297638 -101973806 + (CA)n Simple_repeat Simple_repeat 1 123 0 821 148 0 63 chr9 40298041 40298183 -101973261 + FLAM_C SINE Alu 1 133 0 245 313 224 29 chr9 40298218 40298333 -101973111 - L2 LINE L2 -25 3247 3156 1787 157 24 3 chr9 40298333 40298620 -101972824 + AluJb SINE Alu 1 293 -19 245 313 224 29 chr9 40298620 40298776 -101972668 - L2 LINE L2 -116 3156 2923 452 174 54 0 chr9 40298781 40298873 -101972571 - L1ME3 LINE L1 -220 5942 5846 504 230 12 79 chr9 40299389 40299410 -101972034 + MER5B DNA MER1_type 25 46 -132 2442 74 7 0 chr9 40299410 40299707 -101971737 - AluY SINE Alu -12 299 1 504 230 12 79 chr9 40299707 40299850 -101971594 + MER5B DNA MER1_type 46 178 0 1388 203 101 33 chr9 40300016 40300381 -101971063 + MLT1B LTR MaLR 1 390 0 374 330 118 9 chr9 40300393 40300614 -101970830 + L1ME4a LINE L1 5572 5816 -305 1666 122 50 72 chr9 40300661 40300980 -101970464 - AluSx SINE Alu 0 312 1 2444 102 0 0 chr9 40301003 40301307 -101970137 + AluSx SINE Alu 1 304 -8 821 213 191 11 chr9 40301362 40301635 -101969809 + L1ME3A LINE L1 5743 6064 -106 191 242 274 57 chr9 40302024 40302148 -101969296 - L2 LINE L2 -201 3071 2921 336 24 0 0 chr9 40302477 40302518 -101968926 + (TG)n Simple_repeat Simple_repeat 2 42 0 2296 113 6 3 chr9 40302708 40303019 -101968425 + AluSq SINE Alu 1 312 -1 675 126 0 0 chr9 40303037 40303132 -101968312 - FLAM_A SINE Alu -26 116 22 215 196 0 54 chr9 40303229 40303285 -101968159 - MIR SINE MIR -55 153 101 315 205 32 22 chr9 40304342 40304453 -101966991 + (TA)n Simple_repeat Simple_repeat 2 117 -71 2331 105 0 3 chr9 40304453 40304759 -101966685 - AluSx SINE Alu -7 305 1 315 205 32 22 chr9 40304759 40304832 -101966612 + (TA)n Simple_repeat Simple_repeat 117 188 0 231 253 0 42 chr9 40304832 40304927 -101966517 + L1ME4a LINE L1 5926 6016 -105 207 242 147 32 chr9 40305161 40305256 -101966188 + L2 LINE L2 3203 3308 -5 597 184 0 20 chr9 40305256 40305408 -101966036 + GA-rich Low_complexity Low_complexity 3 151 0 2058 115 3 11 chr9 40305598 40305910 -101965534 + AluSx SINE Alu 1 310 0 395 359 94 17 chr9 40305911 40306209 -101965235 - L1ME4a LINE L1 -86 6035 5715 275 273 0 0 chr9 40306496 40306562 -101964882 - MER5C DNA MER1_type -257 67 2 253 359 0 22 chr9 40307016 40307108 -101964336 - L2 LINE L2 -566 2748 2659 554 237 49 73 chr9 40307242 40307585 -101963859 + MLT1H LTR MaLR 120 549 0 278 220 232 30 chr9 40308508 40308676 -101962768 + MIR3 SINE MIR 2 203 -5 368 248 91 16 chr9 40309164 40309285 -101962159 - MIR SINE MIR -52 210 81 864 55 0 0 chr9 40309334 40309444 -101962000 + (TTCC)n Simple_repeat Simple_repeat 3 112 0 704 148 33 8 chr9 40309444 40309561 -101961883 - FLAM_C SINE Alu -12 121 2 805 244 47 63 chr9 40310113 40310278 -101961166 - LTR16A LTR ERVL -54 396 230 2225 117 0 13 chr9 40310278 40310578 -101960866 + AluSx SINE Alu 1 296 -16 805 244 47 63 chr9 40310578 40310793 -101960651 - LTR16A LTR ERVL -220 230 22 191 298 67 19 chr9 40310839 40310943 -101960501 + MIR SINE MIR 143 251 -11 322 274 59 0 chr9 40311017 40311119 -101960325 - L3 LINE CR1 -78 1499 1392 2872 157 11 25 chr9 40311119 40311648 -101959796 - L1MB3 LINE L1 0 6183 5662 2322 94 0 0 chr9 40311658 40311944 -101959500 + AluSx SINE Alu 12 297 -15 700 171 0 24 chr9 40312054 40312177 -101959267 + AluSg/x SINE Alu 179 298 -14 1707 124 23 8 chr9 40312178 40312444 -101959000 - LTR28 LTR ERV1 -750 270 1 446 170 85 0 chr9 40312496 40312590 -101958854 + HsTC2 DNA Tc2 1790 1891 -7 560 177 94 0 chr9 40312618 40312714 -101958730 + FLAM_A SINE Alu 10 114 -28 2023 116 7 26 chr9 40312992 40313295 -101958149 - AluSx SINE Alu -15 297 1 1942 157 0 25 chr9 40313836 40314155 -101957289 - AluJo SINE Alu 0 312 2 612 174 138 0 chr9 40314177 40314286 -101957158 - FLAM_C SINE Alu -18 125 2 2190 88 7 17 chr9 40314290 40314584 -101956860 - AluSp SINE Alu -22 291 1 1800 130 31 15 chr9 40314625 40314730 -101956714 + AluSg SINE Alu 30 132 -178 2500 67 3 0 chr9 40314730 40315027 -101956417 + AluY SINE Alu 1 298 -13 1800 130 31 15 chr9 40315027 40315182 -101956262 + AluSg SINE Alu 132 294 -16 2200 96 3 3 chr9 40315265 40315547 -101955897 - AluSp SINE Alu -16 297 16 3991 162 35 35 chr9 40315573 40316462 -101954982 - Charlie1 DNA MER1_type -259 2502 1614 293 260 96 10 chr9 40316603 40316707 -101954737 + LTR67 LTR ERVL 442 554 -3 1856 160 17 0 chr9 40317215 40317509 -101953935 + AluJb SINE Alu 6 304 -8 214 240 300 10 chr9 40317937 40318037 -101953407 - L2 LINE L2 -5 3308 3180 2148 122 0 3 chr9 40318499 40318793 -101952651 + AluJb SINE Alu 11 303 -9 460 180 30 40 chr9 40318799 40318899 -101952545 + FLAM_C SINE Alu 31 129 -14 4437 141 93 12 chr9 40319010 40319774 -101951670 - LTR1B LTR ERV1 0 826 1 553 299 74 68 chr9 40320799 40321137 -101950307 - MLT1K LTR MaLR -174 414 75 1632 144 39 0 chr9 40321274 40321530 -101949914 + AluJo SINE Alu 15 280 -32 626 278 79 21 chr9 40321840 40322221 -101949223 + LTR16A1 LTR ERVL 78 457 0 1882 113 4 8 chr9 40322362 40322619 -101948825 - AluSg SINE Alu -54 256 1 696 295 24 16 chr9 40322844 40323098 -101948346 - L1MEc LINE L1 -6030 366 111 1843 121 6 107 chr9 40323193 40323540 -101947904 - AluJb SINE Alu 0 312 1 393 278 74 9 chr9 40323549 40323765 -101947679 - L1MC/D LINE L1 -1987 5821 5592 694 292 27 21 chr9 40324257 40324485 -101946959 - L1MC/D LINE L1 -2215 5593 5361 2258 104 0 0 chr9 40324485 40324783 -101946661 - AluSg SINE Alu 0 310 13 694 292 27 21 chr9 40324783 40324886 -101946558 - L1MC/D LINE L1 -2447 5361 5260 1834 165 14 3 chr9 40324911 40325196 -101946248 + AluJo SINE Alu 1 288 -24 334 309 64 77 chr9 40325215 40325391 -101946053 - L1MC/D LINE L1 -907 5239 5065 2081 141 7 3 chr9 40325391 40325689 -101945755 + AluSx SINE Alu 1 299 -13 334 309 64 77 chr9 40325689 40325745 -101945699 - L1MC/D LINE L1 -1081 5065 5010 344 146 49 61 chr9 40325782 40325864 -101945580 - MER51A LTR ERV1 0 634 554 1198 133 0 0 chr9 40325872 40326045 -101945399 - AluSp SINE Alu -8 305 133 180 0 0 0 chr9 40326045 40326065 -101945379 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 2347 60 0 4 chr9 40326065 40326346 -101945098 - AluY SINE Alu -31 280 1 681 177 23 98 chr9 40326346 40326561 -101944883 - MER51A LTR ERV1 -94 540 342 241 200 18 0 chr9 40326562 40326617 -101944827 - MER51A LTR ERV1 -402 232 177 755 99 25 0 chr9 40326617 40326738 -101944706 + (CCTTG)n Simple_repeat Simple_repeat 2 125 0 1950 67 4 0 chr9 40326938 40327176 -101944268 - AluSq SINE Alu -74 239 1 312 161 0 0 chr9 40327287 40327343 -101944101 - MER51A LTR ERV1 -578 56 1 2457 78 0 7 chr9 40327602 40327909 -101943535 - AluSg SINE Alu -5 305 1 276 340 68 17 chr9 40328064 40328299 -101943145 - L1ME LINE L1 -415 5706 5460 2209 100 0 13 chr9 40328617 40328916 -101942528 - AluSx SINE Alu -17 295 1 180 0 0 0 chr9 40329549 40329569 -101941875 + (TG)n Simple_repeat Simple_repeat 2 21 0 286 297 156 23 chr9 40330860 40330988 -101940456 - L2 LINE L2 -9 3263 3119 23 33 0 0 chr9 40332132 40332162 -101939282 + AT_rich Low_complexity Low_complexity 1 30 0 542 206 53 114 chr9 40332417 40332625 -101938819 - MER58C DNA MER1_type -2205 215 21 1813 187 18 59 chr9 40332625 40332797 -101938647 + MLT1A2 LTR MaLR 1 179 -195 1959 120 0 0 chr9 40332797 40333115 -101938329 + AluSg SINE Alu 6 323 0 1813 187 18 59 chr9 40333115 40333331 -101938113 + MLT1A2 LTR MaLR 179 374 0 542 206 53 114 chr9 40333331 40333350 -101938094 - MER58C DNA MER1_type -2399 21 2 1496 233 35 4 chr9 40333351 40333871 -101937573 + L1MEc LINE L1 2057 2551 -3664 1094 199 76 56 chr9 40333871 40333919 -101937525 - MSTD LTR MaLR -2 394 348 2480 121 86 8 chr9 40333919 40334316 -101937128 - MSTA LTR MaLR 0 428 1 1094 199 76 56 chr9 40334316 40334569 -101936875 - MSTD LTR MaLR -48 348 87 225 154 0 0 chr9 40334569 40334608 -101936836 + (TG)n Simple_repeat Simple_repeat 1 39 0 716 248 0 0 chr9 40334610 40334759 -101936685 - AluJb SINE Alu -31 281 133 207 0 0 0 chr9 40334759 40334782 -101936662 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1028 108 18 24 chr9 40334785 40334952 -101936492 - AluSq SINE Alu -28 285 120 2054 118 3 7 chr9 40335062 40335367 -101936077 + AluSx SINE Alu 1 304 -8 2385 66 0 7 chr9 40337787 40338089 -101933355 - AluY SINE Alu -11 300 1 26 30 0 0 chr9 40338453 40338486 -101932958 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr9 40338901 40338922 -101932522 + AT_rich Low_complexity Low_complexity 1 21 0 2586 72 12 0 chr9 40339104 40339439 -101932005 + L1PA13 LINE L1 5816 6154 -9 189 0 0 0 chr9 40339501 40339522 -101931922 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1396 169 24 0 chr9 40339526 40339775 -101931669 - AluJo SINE Alu -28 284 30 235 235 184 20 chr9 40339787 40339983 -101931461 + L1ME4a LINE L1 5882 6109 -12 657 300 132 66 chr9 40340002 40340625 -101930819 + L3 LINE CR1 839 1502 -75 281 262 19 19 chr9 40340637 40340740 -101930704 + GA-rich Low_complexity Low_complexity 5 107 0 2365 78 3 0 chr9 40340750 40341058 -101930386 + AluSg SINE Alu 1 309 -1 2036 109 0 0 chr9 40341359 40341682 -101929762 + AluSq SINE Alu 1 323 0 468 189 30 8 chr9 40342119 40342231 -101929213 - MER5A DNA MER1_type -71 118 4 227 222 56 0 chr9 40342379 40342433 -101929011 - L2 LINE L2 -1 3271 3215 204 318 80 0 chr9 40342438 40342526 -101928918 - L2 LINE L2 -9 3263 3169 297 179 167 0 chr9 40342529 40342607 -101928837 - L2 LINE L2 0 3313 3223 208 278 0 19 chr9 40342701 40342755 -101928689 + T-rich Low_complexity Low_complexity 4 56 0 631 194 113 88 chr9 40342804 40342881 -101928563 + L1MC4 LINE L1 7612 7686 -356 1508 154 37 60 chr9 40342881 40343180 -101928264 + AluJb SINE Alu 1 292 -20 631 194 113 88 chr9 40343180 40343265 -101928179 + L1MC4 LINE L1 7686 7767 -275 1626 151 58 0 chr9 40343265 40343557 -101927887 - AluJo SINE Alu -2 310 2 631 194 113 88 chr9 40343557 40343676 -101927768 + L1MC4 LINE L1 7767 7901 -141 421 277 141 31 chr9 40343896 40344363 -101927081 + MER115 DNA AcHobo 19 587 -106 195 259 143 45 chr9 40345627 40345739 -101925705 - L2 LINE L2 0 3313 3191 578 100 290 0 chr9 40345741 40345841 -101925603 - MER20 DNA MER1_type 0 219 91 204 336 88 22 chr9 40345989 40346126 -101925318 - L2 LINE L2 -229 3043 2898 292 285 54 9 chr9 40346935 40347065 -101924379 + MIR SINE MIR 12 146 -62 209 255 0 0 chr9 40347439 40347486 -101923958 + (CATCC)n Simple_repeat Simple_repeat 5 51 0 2147 98 10 0 chr9 40347604 40347901 -101923543 + AluSx SINE Alu 1 300 -12 2002 116 0 0 chr9 40348237 40348512 -101922932 - AluSx SINE Alu -37 275 1 453 271 28 0 chr9 40348520 40348627 -101922817 - L2 LINE L2 -5 3308 3199 26 50 0 0 chr9 40348736 40348776 -101922668 + AT_rich Low_complexity Low_complexity 1 40 0 1985 138 0 0 chr9 40350105 40350402 -101921042 - AluSx SINE Alu -15 297 1 526 253 248 5 chr9 40350641 40350843 -101920601 - MIR SINE MIR -10 252 2 517 248 23 8 chr9 40350956 40351085 -101920359 + MIR3 SINE MIR 37 167 -41 278 250 60 0 chr9 40351117 40351201 -101920243 - MER103 DNA DNA -29 137 49 253 298 79 9 chr9 40351375 40351489 -101919955 + MIR3 SINE MIR 83 204 -4 383 244 38 38 chr9 40351760 40351891 -101919553 + MER117 DNA MER1_type 38 168 -29 244 311 0 0 chr9 40351903 40351964 -101919480 + MER117 DNA MER1_type 136 196 -1 268 288 43 43 chr9 40352016 40352155 -101919289 - MIR SINE MIR -61 201 63 778 167 0 38 chr9 40352846 40352978 -101918466 - FLAM_A SINE Alu -3 130 4 1703 178 0 3 chr9 40353091 40353377 -101918067 - AluJo SINE Alu -27 285 1 28 48 0 0 chr9 40354774 40354816 -101916628 + AT_rich Low_complexity Low_complexity 1 42 0 186 43 0 0 chr9 40355014 40355037 -101916407 + (T)n Simple_repeat Simple_repeat 1 23 0 318 296 25 0 chr9 40355174 40355255 -101916189 + MIR3 SINE MIR 104 186 -22 776 254 28 44 chr9 40355294 40355469 -101915975 - MIR SINE MIR 0 262 90 2067 93 7 0 chr9 40355469 40355781 -101915663 + AluSp SINE Alu 2 315 0 776 254 28 44 chr9 40355781 40355856 -101915588 - MIR SINE MIR -172 90 15 1119 195 0 43 chr9 40355869 40356079 -101915365 + MER58A DNA MER1_type 1 201 -23 1165 142 52 0 chr9 40356149 40356360 -101915084 - AluJo SINE Alu -2 310 89 340 291 0 27 chr9 40356783 40356893 -101914551 + MIR3 SINE MIR 97 203 -5 2033 122 19 41 chr9 40357256 40357541 -101913903 - MER7A DNA MER2_type -2693 345 68 1450 167 55 4 chr9 40357541 40357816 -101913628 + AluJo SINE Alu 1 289 -23 2033 122 19 41 chr9 40357816 40357850 -101913594 - MER7A DNA MER2_type -2970 68 35 1894 110 11 14 chr9 40357978 40358301 -101913143 - AluSx SINE Alu 0 322 1 2271 92 0 0 chr9 40358314 40358617 -101912827 - AluSg SINE Alu -7 303 1 2108 105 0 0 chr9 40358624 40358953 -101912491 - AluSx SINE Alu 0 329 1 245 163 47 0 chr9 40359606 40359649 -101911795 - MER103 DNA DNA -79 87 43 191 259 56 0 chr9 40360550 40360604 -101910840 - MIR SINE MIR -71 137 81 339 271 161 8 chr9 40360681 40360799 -101910645 + L3 LINE CR1 1259 1394 -183 1624 167 20 20 chr9 40361766 40362072 -101909372 + AluJo SINE Alu 3 308 -4 2238 96 0 7 chr9 40362544 40362845 -101908599 - AluSg SINE Alu -11 299 1 522 277 33 33 chr9 40362872 40363085 -101908359 + L2 LINE L2 2148 2360 -954 519 304 39 70 chr9 40363086 40363233 -101908211 + L1MEc LINE L1 36 186 -6210 2024 110 14 0 chr9 40363233 40363523 -101907921 + AluSq SINE Alu 1 294 -19 519 304 39 70 chr9 40363523 40363733 -101907711 + L1MEc LINE L1 186 382 -6014 268 331 83 41 chr9 40363872 40364017 -101907427 - L2 LINE L2 0 3272 3122 1847 99 4 4 chr9 40364096 40364349 -101907095 - AluSx SINE Alu -59 253 1 1641 185 6 31 chr9 40364350 40364675 -101906769 + L1ME2 LINE L1 5558 5874 -290 1467 183 44 4 chr9 40364676 40364794 -101906650 + AluJo SINE Alu 1 113 -200 207 88 0 0 chr9 40364794 40364828 -101906616 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1467 183 44 4 chr9 40364828 40365011 -101906433 + AluJo SINE Alu 113 313 0 747 177 21 136 chr9 40365011 40365045 -101906399 + L1ME2 LINE L1 5949 5985 -179 1717 136 28 11 chr9 40365045 40365332 -101906112 + AluJo SINE Alu 1 292 -20 747 177 21 136 chr9 40365332 40365471 -101905973 + L1ME2 LINE L1 5985 6089 -75 2243 113 0 0 chr9 40365471 40365780 -101905664 + AluSx SINE Alu 1 309 -3 747 177 21 136 chr9 40365780 40365848 -101905596 + L1ME2 LINE L1 6089 6163 -1 2118 95 0 0 chr9 40366120 40366414 -101905030 - AluY SINE Alu -15 296 3 238 317 130 25 chr9 40366415 40366576 -101904868 + L2 LINE L2 2693 2870 -444 259 300 58 17 chr9 40366704 40366824 -101904620 - L1ME3A LINE L1 -37 6133 6009 939 245 65 43 chr9 40366957 40367329 -101904115 - L1MC5 LINE L1 -426 7535 7156 447 216 56 48 chr9 40367395 40367520 -101903924 - L1MC5 LINE L1 -820 7141 7016 2239 108 0 6 chr9 40367539 40367853 -101903591 - AluSx SINE Alu 0 312 1 1914 115 31 0 chr9 40367853 40368140 -101903304 - AluSx SINE Alu -16 296 1 247 236 18 0 chr9 40368140 40368195 -101903249 - L1MC5 LINE L1 -931 7030 6975 * 3135 221 90 36 chr9 40368194 40369697 -101901747 - MSTD-int LTR MaLR -8 1727 2 1143 220 158 42 chr9 40369698 40369770 -101901674 - MSTD LTR MaLR 0 396 334 2214 80 0 29 chr9 40369770 40370084 -101901360 + AluY SINE Alu 1 305 -6 1143 220 158 42 chr9 40370084 40370366 -101901078 - MSTD LTR MaLR -62 334 1 421 229 9 18 chr9 40370515 40370624 -101900820 - L1MC5 LINE L1 -1051 6910 6803 2627 192 29 23 chr9 40370671 40370721 -101900723 - L1MD2 LINE L1 -24 6335 6287 2304 71 0 31 chr9 40370721 40371044 -101900400 + AluSp SINE Alu 1 313 0 2627 192 29 23 chr9 40371044 40371549 -101899895 - L1MD2 LINE L1 -72 6287 5777 1823 172 123 93 chr9 40371572 40372142 -101899302 - L1ME2 LINE L1 -70 6094 5508 819 186 19 6 chr9 40372153 40372314 -101899130 - FRAM SINE Alu -14 162 1 2054 211 60 13 chr9 40372315 40372471 -101898973 - L1ME2 LINE L1 -675 5489 5342 2114 108 0 23 chr9 40372471 40372778 -101898666 - AluSq SINE Alu -13 300 1 2054 211 60 13 chr9 40372778 40373310 -101898134 - L1ME2 LINE L1 -822 5342 4764 1095 205 69 39 chr9 40373328 40373631 -101897813 - L1MD2 LINE L1 -1015 5131 4816 2242 100 0 3 chr9 40373631 40373942 -101897502 - AluSx SINE Alu -2 310 1 1095 205 69 39 chr9 40373942 40373970 -101897474 - L1MD2 LINE L1 -1330 4816 4790 282 259 74 0 chr9 40373954 40374035 -101897409 - L1MC5 LINE L1 -1232 6729 6643 * 2227 78 10 3 chr9 40375911 40376206 -101895238 - AluSp SINE Alu -16 297 1 328 249 124 59 chr9 40376251 40376420 -101895024 - MER5A DNA MER1_type 0 189 10 535 169 173 0 chr9 40376499 40376626 -101894818 + MIR SINE MIR 38 188 -62 1025 334 8 19 chr9 40376651 40377028 -101894416 + MLT1I LTR MaLR 11 383 -26 22 0 0 0 chr9 40377728 40377750 -101893694 + AT_rich Low_complexity Low_complexity 1 22 0 2276 71 0 0 chr9 40377959 40378266 -101893178 + AluY SINE Alu 2 308 0 919 178 0 12 chr9 40378271 40378440 -101893004 - FRAM SINE Alu -8 168 2 233 298 38 0 chr9 40378612 40378700 -101892744 + MIR SINE MIR 65 146 -62 873 192 253 0 chr9 40378749 40378994 -101892450 - L2 LINE L2 -2 3311 3005 285 320 73 13 chr9 40378987 40379137 -101892307 - L2 LINE L2 -1095 2219 2061 * 509 241 69 35 chr9 40379609 40379754 -101891690 + L2 LINE L2 3162 3311 -2 196 330 68 23 chr9 40379870 40379958 -101891486 - L2 LINE L2 -14 3299 3208 2050 124 61 25 chr9 40380056 40380418 -101891026 + THE1C LTR MaLR 1 375 0 9897 101 38 66 chr9 40380418 40382045 -101889399 + THE1C-int LTR MaLR 1 1580 0 1988 116 79 22 chr9 40382045 40382400 -101889044 + THE1C LTR MaLR 1 375 0 314 223 316 14 chr9 40382600 40382739 -101888705 + MER5A DNA MER1_type 9 189 0 285 309 86 7 chr9 40382745 40382884 -101888560 - MIR SINE MIR -106 156 7 * 395 317 22 17 chr9 40382883 40383088 -101888356 - L2 LINE L2 -226 3046 2841 193 270 120 30 chr9 40383257 40383357 -101888087 + MIR SINE MIR 63 171 -91 1307 161 5 18 chr9 40383369 40383587 -101887857 + AluSg/x SINE Alu 93 307 -2 238 266 97 18 chr9 40384189 40384228 -101887216 - MIR SINE MIR -18 244 210 2220 137 0 6 chr9 40384228 40384542 -101886902 - AluJo SINE Alu 0 312 1 238 266 97 18 chr9 40384542 40384615 -101886829 - MIR SINE MIR -52 210 123 1241 87 0 0 chr9 40384778 40384927 -101886517 - AluSq/x SINE Alu -163 149 1 2162 130 0 0 chr9 40385293 40385586 -101885858 - AluSx SINE Alu -10 302 10 907 246 50 80 chr9 40386048 40386782 -101884662 + L1ME3A LINE L1 2466 3174 -3366 849 147 32 26 chr9 40386786 40386942 -101884502 + FRAM SINE Alu 3 159 -17 677 263 56 30 chr9 40386956 40387127 -101884317 + L1ME3A LINE L1 3172 3337 -3203 2133 118 6 16 chr9 40387127 40387441 -101884003 + AluSq SINE Alu 1 311 -2 677 263 56 30 chr9 40387441 40387698 -101883746 + L1ME3A LINE L1 3337 3611 -2929 509 296 101 45 chr9 40387704 40387811 -101883633 + L1ME3A LINE L1 3640 3740 -2800 2442 74 0 3 chr9 40387811 40388108 -101883336 + AluSc SINE Alu 1 296 -13 509 296 101 45 chr9 40388108 40388308 -101883136 + L1ME3A LINE L1 3740 3964 -2576 292 240 67 48 chr9 40388322 40388426 -101883018 + HERV16 LTR ERVL 4801 4906 -90 230 348 61 0 chr9 40388527 40388642 -101882802 + LTR16A1 LTR ERVL 1 122 -335 254 208 123 28 chr9 40388664 40388770 -101882674 + LTR16A1 LTR ERVL 328 443 -14 306 0 0 0 chr9 40388813 40388847 -101882597 + (TA)n Simple_repeat Simple_repeat 2 35 0 542 257 32 14 chr9 40388852 40388951 -101882493 + L1ME3A LINE L1 5684 5780 -776 1659 162 65 14 chr9 40388951 40389241 -101882203 + AluJo SINE Alu 1 305 -7 542 257 32 14 chr9 40389241 40389413 -101882031 + L1ME3A LINE L1 5780 5950 -606 534 281 144 0 chr9 40389420 40389705 -101881739 + L1ME3A LINE L1 6019 6344 -220 914 148 41 70 chr9 40391603 40391783 -101879661 - L1MC3 LINE L1 -21 7764 7591 2027 143 0 20 chr9 40391783 40392084 -101879360 - AluJb SINE Alu -17 295 1 914 148 41 70 chr9 40392084 40392147 -101879297 - L1MC3 LINE L1 -194 7591 7528 721 238 79 55 chr9 40392278 40392568 -101878876 + MLT1I LTR MaLR 97 393 -16 389 311 129 34 chr9 40392960 40393224 -101878220 + L2 LINE L2 2977 3265 -7 312 300 144 22 chr9 40393278 40393458 -101877986 - L3 LINE CR1 -258 1319 1118 259 149 43 0 chr9 40394368 40394415 -101877029 + L1MC4 LINE L1 6794 6842 -1200 962 144 62 0 chr9 40394417 40394577 -101876867 + FRAM SINE Alu 1 169 -7 2688 226 186 12 chr9 40394577 40395603 -101875841 + L1MC4 LINE L1 6834 8038 -4 536 315 119 28 chr9 40395642 40395928 -101875516 - L3 LINE CR1 -849 728 417 213 216 118 0 chr9 40396036 40396087 -101875357 - L2 LINE L2 -4 3268 3212 2157 82 54 0 chr9 40396378 40396657 -101874787 + AluSp SINE Alu 1 294 -19 2319 89 3 26 chr9 40397440 40397753 -101873691 + AluSg SINE Alu 1 306 -4 1027 157 34 6 chr9 40398035 40398213 -101873231 - LTR28 LTR ERV1 -837 183 1 344 211 84 11 chr9 40398265 40398360 -101873084 + HsTC2 DNA Tc2 1790 1891 -7 428 240 94 0 chr9 40398388 40398484 -101872960 + FLAM_A SINE Alu 10 114 -28 2023 116 7 26 chr9 40398762 40399065 -101872379 - AluSx SINE Alu -15 297 1 1942 157 0 25 chr9 40399605 40399924 -101871520 - AluJo SINE Alu 0 312 2 612 174 138 0 chr9 40399946 40400055 -101871389 - FLAM_C SINE Alu -18 125 2 971 72 7 36 chr9 40400059 40400197 -101871247 - AluSp/q SINE Alu -22 291 158 1696 208 56 19 chr9 40400230 40400691 -101870753 - L1M1 LINE L1 -4169 3396 2919 276 326 63 11 chr9 40401750 40401845 -101869599 + MIR SINE MIR 32 131 -77 1350 164 30 112 chr9 40401847 40402152 -101869292 - AluJb SINE Alu -27 285 6 1164 175 21 67 chr9 40402188 40402420 -101869024 + L1ME1 LINE L1 5687 5905 -261 2246 101 0 49 chr9 40402420 40402748 -101868696 - AluSx SINE Alu 0 312 1 1164 175 21 67 chr9 40402748 40402800 -101868644 + L1ME1 LINE L1 5905 5958 -208 277 205 32 116 chr9 40403308 40403414 -101868030 + Charlie7 DNA MER1_type 2438 2523 -89 2094 119 10 0 chr9 40403414 40403707 -101867737 + AluSx SINE Alu 6 301 -11 277 205 32 116 chr9 40403707 40403790 -101867654 + Charlie7 DNA MER1_type 2523 2611 -1 242 258 106 113 chr9 40404091 40404347 -101867097 - L2 LINE L2 -693 2621 2368 433 237 0 11 chr9 40404469 40404562 -101866882 - MIR SINE MIR -83 125 34 384 234 136 32 chr9 40405070 40405224 -101866220 - L2 LINE L2 -183 3089 2920 3364 96 32 39 chr9 40405390 40405539 -101865905 + L1PB2 LINE L1 5620 5769 -382 2230 97 33 13 chr9 40405539 40405839 -101865605 + AluSp SINE Alu 1 306 -7 3364 96 32 39 chr9 40405839 40406223 -101865221 + L1PB2 LINE L1 5769 6149 -2 186 289 174 8 chr9 40406477 40406598 -101864846 - L2 LINE L2 -212 3060 2920 253 330 9 9 chr9 40406739 40406848 -101864596 + L2 LINE L2 2960 3068 -204 355 244 70 94 chr9 40407549 40407750 -101863694 - L3 LINE CR1 -37 1540 1345 2592 57 0 0 chr9 40407764 40408064 -101863380 - AluY SINE Alu -11 300 1 1805 134 12 66 chr9 40408670 40408990 -101862454 - AluJo SINE Alu -9 303 1 1428 154 17 137 chr9 40409169 40409519 -101861925 - AluJo SINE Alu -4 308 1 394 242 174 0 chr9 40409520 40409669 -101861775 - MER104 DNA Tc2 0 180 6 839 169 6 28 chr9 40410060 40410237 -101861207 + SVA Other Other 431 603 -783 27 29 0 0 chr9 40410323 40410357 -101861087 + AT_rich Low_complexity Low_complexity 1 34 0 810 233 0 11 chr9 40411017 40411193 -101860251 + MIR SINE MIR 41 214 -48 225 313 167 0 chr9 40411567 40411663 -101859781 - MIR SINE MIR -72 136 25 268 282 28 92 chr9 40411936 40412078 -101859366 + L2 LINE L2 3090 3222 -50 1962 143 3 13 chr9 40412123 40412423 -101859021 + AluJb SINE Alu 1 297 -15 2482 56 17 13 chr9 40412495 40412797 -101858647 + AluSp SINE Alu 1 303 -10 380 293 195 43 chr9 40412900 40413316 -101858128 + L2 LINE L2 2827 3305 -8 637 297 79 61 chr9 40413328 40413671 -101857773 - L2 LINE L2 -4 3268 2920 750 93 28 19 chr9 40414104 40414212 -101857232 + AluJb SINE Alu 98 206 -106 1880 123 61 4 chr9 40414417 40414694 -101856750 - AluSx SINE Alu -19 293 1 716 200 0 0 chr9 40414746 40414871 -101856573 - FLAM_A SINE Alu -5 128 4 2529 160 72 41 chr9 40415383 40415653 -101855791 - MLT1D LTR MaLR 0 505 211 2319 82 3 0 chr9 40415653 40416005 -101855439 - AluSq SINE Alu 0 353 1 2529 160 72 41 chr9 40416005 40416221 -101855223 - MLT1D LTR MaLR -294 211 3 304 265 118 107 chr9 40416293 40416640 -101854804 + L2 LINE L2 2902 3252 -20 345 327 24 68 chr9 40416669 40416917 -101854527 + L1ME4a LINE L1 5645 5881 -240 302 299 77 62 chr9 40417296 40417490 -101853954 + L2 LINE L2 2932 3128 -144 328 331 43 6 chr9 40417529 40417692 -101853752 - MER117 DNA MER1_type -28 169 1 929 119 0 15 chr9 40418694 40418828 -101852616 - FLAM_C SINE Alu 0 133 2 1619 169 0 78 chr9 40419014 40419333 -101852111 - AluJb SINE Alu -18 294 1 844 248 50 21 chr9 40419375 40419608 -101851836 + MIR SINE MIR 25 262 0 205 295 114 29 chr9 40420024 40420129 -101851315 - MIR3 SINE MIR -9 199 86 1680 144 0 127 chr9 40420684 40421038 -101850406 - AluJb SINE Alu -3 309 1 829 273 72 9 chr9 40421158 40421477 -101849967 + Charlie2 DNA MER1_type 2 340 -2442 260 172 9 95 chr9 40421502 40421554 -101849890 + Charlie2 DNA MER1_type 2240 2295 -567 1207 183 96 37 chr9 40421554 40421656 -101849788 - MER2 DNA MER2_type 0 344 249 2275 127 0 9 chr9 40421656 40421971 -101849473 + AluSx SINE Alu 1 312 0 2365 92 3 10 chr9 40421981 40422287 -101849157 + AluSx SINE Alu 1 304 -8 1207 183 96 37 chr9 40422287 40422495 -101848949 - MER2 DNA MER2_type -103 241 4 260 172 9 95 chr9 40422495 40422558 -101848886 + Charlie2 DNA MER1_type 2295 2345 -517 559 122 0 0 chr9 40422784 40422866 -101848578 + AluY SINE Alu 213 294 -17 462 193 198 43 chr9 40422927 40423114 -101848330 + L1MCc LINE L1 253 468 -5955 355 290 136 6 chr9 40423282 40423444 -101848000 + L1MCc LINE L1 814 996 -5427 629 284 111 0 chr9 40423492 40423717 -101847727 + L1MCc LINE L1 1096 1345 -5078 2190 98 0 29 chr9 40423735 40424050 -101847394 - AluSx SINE Alu -6 306 1 24 0 0 0 chr9 40424497 40424521 -101846923 + AT_rich Low_complexity Low_complexity 1 24 0 228 194 139 69 chr9 40424673 40424745 -101846699 - MIR SINE MIR -115 93 17 234 200 22 0 chr9 40425135 40425180 -101846264 - L3 LINE CR1 -323 1254 1209 495 205 98 9 chr9 40425219 40425345 -101846099 + MIR SINE MIR 2 145 -63 384 240 128 9 chr9 40426787 40426819 -101844625 + MIR SINE MIR 3 30 -232 2203 124 0 0 chr9 40426819 40427118 -101844326 + AluSx SINE Alu 2 300 -12 384 240 128 9 chr9 40427118 40427271 -101844173 + MIR SINE MIR 30 261 -1 304 319 80 59 chr9 40427542 40427780 -101843664 - L3b LINE CR1 -144 1439 1197 334 308 77 53 chr9 40428116 40428324 -101843120 + MIR SINE MIR 3 215 -47 * 485 270 81 13 chr9 40428293 40428472 -101842972 + MIR SINE MIR 18 208 -54 2165 92 39 0 chr9 40428585 40428869 -101842575 - AluSq SINE Alu -18 295 1 2298 100 3 3 chr9 40430551 40430850 -101840594 + AluSp SINE Alu 1 299 -14 263 291 0 43 chr9 40431015 40431063 -101840381 + LTR67 LTR ERVL 440 551 -6 392 159 14 0 chr9 40431063 40431132 -101840312 + MLT1K LTR MaLR 513 582 -6 187 182 18 73 chr9 40431316 40431371 -101840073 + MIR SINE MIR 23 74 -188 2102 133 0 17 chr9 40432084 40432221 -101839223 + AluSx SINE Alu 1 139 -173 1973 154 0 7 chr9 40432221 40432520 -101838924 + AluSx SINE Alu 1 297 -15 2102 133 0 17 chr9 40432520 40432682 -101838762 + AluSx SINE Alu 139 295 -17 1153 131 51 11 chr9 40432929 40432949 -101838495 + AluSg/x SINE Alu 112 130 -180 2595 51 3 0 chr9 40432949 40433245 -101838199 + AluY SINE Alu 1 297 -14 1153 131 51 11 chr9 40433245 40433400 -101838044 + AluSg/x SINE Alu 130 294 -16 2200 96 3 3 chr9 40433483 40433765 -101837679 - AluSp SINE Alu -16 297 16 3991 162 35 35 chr9 40433791 40434680 -101836764 - Charlie1 DNA MER1_type -259 2502 1614 293 260 96 10 chr9 40434821 40434925 -101836519 + LTR67 LTR ERVL 442 554 -3 1856 160 17 0 chr9 40435433 40435727 -101835717 + AluJb SINE Alu 6 304 -8 214 240 300 10 chr9 40436155 40436255 -101835189 - L2 LINE L2 -5 3308 3180 2148 122 0 3 chr9 40436717 40437011 -101834433 + AluJb SINE Alu 11 303 -9 488 170 30 40 chr9 40437017 40437117 -101834327 + FLAM_C SINE Alu 31 129 -14 4437 141 93 12 chr9 40437228 40437992 -101833452 - LTR1B LTR ERV1 0 826 1 541 302 74 68 chr9 40439017 40439355 -101832089 - MLT1K LTR MaLR -174 414 75 1632 144 39 0 chr9 40439491 40439747 -101831697 + AluJo SINE Alu 15 280 -32 656 279 79 17 chr9 40440057 40440437 -101831007 + LTR16A1 LTR ERVL 78 457 0 1318 198 86 36 chr9 40440705 40441233 -101830211 + LTR8A LTR ERV1 1 577 -150 2073 130 38 0 chr9 40441377 40441670 -101829774 - AluSx SINE Alu -8 304 1 1312 154 0 26 chr9 40441746 40441973 -101829471 - AluJb SINE Alu -5 307 87 348 164 68 82 chr9 40441977 40442077 -101829367 - HAL1 LINE L1 -92 2415 2316 2265 79 50 0 chr9 40442077 40442357 -101829087 - AluSx SINE Alu -17 295 2 348 164 68 82 chr9 40442357 40442402 -101829042 - HAL1 LINE L1 -191 2316 2272 1129 176 95 91 chr9 40442528 40442641 -101828803 + Charlie1b DNA MER1_type 1 112 -2649 3254 138 77 31 chr9 40442641 40443226 -101828218 - LTR9 LTR ERV1 0 612 1 2060 142 16 7 chr9 40443236 40443539 -101827905 - AluSx SINE Alu -6 306 1 1129 176 95 91 chr9 40443539 40443722 -101827722 + Charlie1b DNA MER1_type 120 301 -2460 808 154 15 0 chr9 40443722 40443852 -101827592 - FLAM_C SINE Alu -1 132 1 1129 176 95 91 chr9 40443852 40443886 -101827558 + Charlie1b DNA MER1_type 301 333 -2428 2373 89 3 0 chr9 40443886 40444190 -101827254 - AluSc SINE Alu -4 305 1 1129 176 95 91 chr9 40444190 40444255 -101827189 + Charlie1b DNA MER1_type 333 411 -112 763 209 0 8 chr9 40444947 40445081 -101826363 - FLAM_C SINE Alu 0 133 1 252 276 114 16 chr9 40445236 40445359 -101826085 + MIR SINE MIR 127 261 -1 842 141 96 0 chr9 40445360 40445495 -101825949 + FRAM SINE Alu 21 168 -8 1900 124 103 26 chr9 40445564 40445912 -101825532 + THE1C LTR MaLR 1 375 0 28 0 0 0 chr9 40446790 40446818 -101824626 + AT_rich Low_complexity Low_complexity 1 28 0 1601 204 0 19 chr9 40446827 40447136 -101824308 - AluSx SINE Alu -9 303 1 1518 222 174 67 chr9 40447177 40447287 -101824157 - HAL1 LINE L1 -63 2444 2347 1788 125 27 30 chr9 40447287 40447584 -101823860 - AluJb SINE Alu -6 306 11 1518 222 174 67 chr9 40447584 40448344 -101823100 - HAL1 LINE L1 -160 2347 1480 357 282 84 69 chr9 40448349 40448455 -101822989 - HAL1 LINE L1 -1115 1392 1280 2325 90 0 7 chr9 40448455 40448756 -101822688 + AluSx SINE Alu 1 299 -13 357 282 84 69 chr9 40448756 40448851 -101822593 - HAL1 LINE L1 -1227 1280 1188 1112 174 5 0 chr9 40448852 40449021 -101822423 - AluJb SINE Alu -10 302 130 1753 152 25 11 chr9 40449021 40449304 -101822140 - AluJb SINE Alu -21 291 5 1112 174 5 0 chr9 40449304 40449318 -101822126 - AluJb SINE Alu -182 130 118 866 221 84 67 chr9 40449333 40449607 -101821837 - HAL1 LINE L1 -2144 363 80 2002 100 82 7 chr9 40449607 40449887 -101821557 - AluSx SINE Alu -11 301 1 866 221 84 67 chr9 40449887 40449969 -101821475 - HAL1 LINE L1 -2427 80 1 326 161 11 151 chr9 40455672 40455765 -101815679 - FAM SINE Alu -8 167 86 720 244 26 6 chr9 40455765 40455921 -101815523 - FAM SINE Alu -16 159 1 2034 150 0 3 chr9 40456545 40456839 -101814605 + AluJb SINE Alu 1 293 -19 667 230 0 0 chr9 40457018 40457144 -101814300 + FLAM_A SINE Alu 1 126 -7 753 164 55 0 chr9 40457217 40457345 -101814099 - AluJo SINE Alu -176 136 2 1825 168 11 0 chr9 40457701 40457975 -101813469 - AluJb SINE Alu -25 287 11 849 172 23 29 chr9 40459251 40459425 -101812019 + MER5A DNA MER1_type 11 183 -6 2351 90 0 0 chr9 40459436 40459726 -101811718 + AluSx SINE Alu 16 305 -7 601 229 291 3 chr9 40459781 40460131 -101811313 - LTR50 LTR ERVL -343 452 2 2223 133 0 0 chr9 40460256 40460557 -101810887 - AluSg SINE Alu -9 301 1 500 206 27 98 chr9 40461114 40461298 -101810146 + MIR SINE MIR 56 226 -36 220 231 44 44 chr9 40462668 40462759 -101808685 + MER91A DNA MER1_type 58 148 -48 376 272 252 7 chr9 40463574 40463721 -101807723 - L3 LINE CR1 -551 1026 844 388 251 140 58 chr9 40464662 40464833 -101806611 - MIR3 SINE MIR -7 201 17 2133 135 0 3 chr9 40465097 40465400 -101806044 - AluJb SINE Alu -10 302 1 543 237 95 9 chr9 40465419 40465692 -101805752 - MER46C DNA MER2_type 0 338 1 2185 129 0 10 chr9 40465984 40466287 -101805157 - AluSg SINE Alu -10 300 1 352 230 71 53 chr9 40466635 40466748 -101804696 + MIR SINE MIR 92 206 -56 284 258 141 8 chr9 40467175 40467303 -101804141 - MIR SINE MIR -112 150 6 240 179 75 0 chr9 40467653 40467720 -101803724 - MIR SINE MIR -89 119 48 516 280 70 25 chr9 40468969 40469169 -101802275 + MIR SINE MIR 37 245 -17 1823 143 14 14 chr9 40469181 40469468 -101801976 + AluJo SINE Alu 1 287 -25 1805 158 6 29 chr9 40469482 40469798 -101801646 + AluJo SINE Alu 1 309 -3 604 267 77 17 chr9 40470610 40470924 -101800520 + MLT1G3 LTR MaLR 175 590 -5 411 145 241 0 chr9 40470988 40471071 -101800373 + 5S rRNA rRNA 9 111 -10 344 278 147 61 chr9 40471095 40471293 -101800151 + L1ME3A LINE L1 5170 5384 -762 2299 108 27 0 chr9 40471293 40471589 -101799855 + AluSx SINE Alu 1 304 -8 821 213 191 11 chr9 40471644 40471917 -101799527 + L1ME3A LINE L1 5743 6064 -106 191 242 274 57 chr9 40472306 40472430 -101799014 - L2 LINE L2 -201 3071 2921 336 24 0 0 chr9 40472759 40472800 -101798644 + (TG)n Simple_repeat Simple_repeat 2 42 0 2296 113 6 3 chr9 40472990 40473301 -101798143 + AluSq SINE Alu 1 312 -1 675 126 0 0 chr9 40473319 40473414 -101798030 - FLAM_A SINE Alu -26 116 22 199 214 0 54 chr9 40473511 40473567 -101797877 - MIR SINE MIR -55 153 101 315 205 32 22 chr9 40474624 40474735 -101796709 + (TA)n Simple_repeat Simple_repeat 2 117 -71 2331 105 0 3 chr9 40474735 40475041 -101796403 - AluSx SINE Alu -7 305 1 315 205 32 22 chr9 40475041 40475114 -101796330 + (TA)n Simple_repeat Simple_repeat 117 188 0 231 253 0 42 chr9 40475114 40475209 -101796235 + L1ME4a LINE L1 5926 6016 -105 207 242 147 32 chr9 40475443 40475538 -101795906 + L2 LINE L2 3203 3308 -5 597 184 0 20 chr9 40475538 40475690 -101795754 + GA-rich Low_complexity Low_complexity 3 151 0 2137 108 0 10 chr9 40475880 40476194 -101795250 + AluSx SINE Alu 1 311 0 411 357 88 17 chr9 40476198 40476492 -101794952 - L1ME4a LINE L1 -92 6029 5715 275 273 0 0 chr9 40476779 40476845 -101794599 - MER5C DNA MER1_type -257 67 2 253 359 0 22 chr9 40477299 40477391 -101794053 - L2 LINE L2 -566 2748 2659 554 237 49 73 chr9 40477525 40477868 -101793576 + MLT1H LTR MaLR 120 549 0 278 220 232 30 chr9 40478791 40478959 -101792485 + MIR3 SINE MIR 2 203 -5 368 248 91 16 chr9 40479447 40479568 -101791876 - MIR SINE MIR -52 210 81 864 55 0 0 chr9 40479617 40479727 -101791717 + (TTCC)n Simple_repeat Simple_repeat 3 112 0 704 148 33 8 chr9 40479727 40479844 -101791600 - FLAM_C SINE Alu -12 121 2 805 244 47 63 chr9 40480396 40480561 -101790883 - LTR16A LTR ERVL -54 396 230 2225 117 0 13 chr9 40480561 40480861 -101790583 + AluSx SINE Alu 1 296 -16 805 244 47 63 chr9 40480861 40481076 -101790368 - LTR16A LTR ERVL -220 230 22 191 298 67 19 chr9 40481122 40481226 -101790218 + MIR SINE MIR 143 251 -11 310 270 60 0 chr9 40481300 40481400 -101790044 - L3 LINE CR1 -78 1499 1394 3192 154 13 83 chr9 40481401 40481940 -101789504 - L1MB3 LINE L1 0 6183 5608 2322 94 0 0 chr9 40481940 40482226 -101789218 + AluSx SINE Alu 12 297 -15 3192 154 13 83 chr9 40482226 40482243 -101789201 - L1MB3 LINE L1 -575 5608 5591 1834 156 13 17 chr9 40482243 40482545 -101788899 - AluJo SINE Alu 0 312 12 3192 154 13 83 chr9 40482545 40482664 -101788780 - L1MB3 LINE L1 -592 5591 5554 243 88 0 0 chr9 40482769 40482803 -101788641 + (T)n Simple_repeat Simple_repeat 1 34 0 3461 118 96 2 chr9 40482904 40483498 -101787946 - L1MA4A LINE L1 -198 6105 5456 362 297 8 34 chr9 40483504 40483622 -101787822 + L2 LINE L2 2332 2446 -868 407 277 186 5 chr9 40483630 40483818 -101787626 + L2 LINE L2 2638 2859 -455 817 183 22 33 chr9 40483998 40484178 -101787266 - AluJo SINE Alu -11 301 124 224 326 15 0 chr9 40484243 40484314 -101787130 + L2 LINE L2 3136 3248 -65 248 250 44 0 chr9 40484336 40484404 -101787040 - MIR SINE MIR -9 253 183 216 231 115 0 chr9 40484411 40484463 -101786981 + L2 LINE L2 3214 3271 -1 445 332 15 40 chr9 40484485 40484684 -101786760 - L3 LINE CR1 -134 1443 1250 180 303 101 17 chr9 40535648 40535767 -101735677 + L2 LINE L2 2551 2679 -635 257 154 0 0 chr9 40536622 40536661 -101734783 + L2 LINE L2 3221 3259 -13 2031 128 0 0 chr9 40536757 40537053 -101734391 + AluSx SINE Alu 7 302 -10 561 323 36 5 chr9 40537587 40537779 -101733665 + MIR SINE MIR 62 259 -3 186 372 23 0 chr9 40540452 40540538 -101730906 - L2 LINE L2 0 3313 3226 320 287 75 26 chr9 40541261 40541575 -101729869 - LTR33 LTR ERVL -8 513 92 272 319 0 0 chr9 40543141 40543213 -101728231 + MER5A DNA MER1_type 1 72 -117 1706 107 118 7 chr9 40543216 40543320 -101728124 + AluSg SINE Alu 1 92 -218 2201 103 0 6 chr9 40543320 40543631 -101727813 + AluSx SINE Alu 1 309 -3 1706 107 118 7 chr9 40543631 40543797 -101727647 + AluSg SINE Alu 92 301 -9 1330 189 4 7 chr9 40543813 40544083 -101727361 + AluJo SINE Alu 34 302 -10 414 271 16 8 chr9 40544083 40544205 -101727239 + MER5A DNA MER1_type 67 189 0 1107 158 13 35 chr9 40544735 40544963 -101726481 - AluJo SINE Alu -3 309 87 254 241 0 48 chr9 40545192 40545275 -101726169 - L2 LINE L2 0 3313 3235 228 211 18 18 chr9 40545701 40545758 -101725686 + GA-rich Low_complexity Low_complexity 4 60 0 220 306 27 63 chr9 40545987 40546098 -101725346 + MIR SINE MIR 38 144 -64 876 192 68 0 chr9 40546114 40546192 -101725252 + MER5A DNA MER1_type 1 72 -117 2281 91 0 0 chr9 40546192 40546489 -101724955 + AluSx SINE Alu 1 297 -15 876 192 68 0 chr9 40546489 40546587 -101724857 + MER5A DNA MER1_type 72 189 0 1592 224 14 16 chr9 40547107 40547473 -101723971 - MLT1A1 LTR MaLR 0 365 1 277 238 113 25 chr9 40547477 40547557 -101723887 + HsTC2 DNA Tc2 1 87 -1811 1689 153 3 0 chr9 40547617 40547927 -101723517 - AluSx SINE Alu 0 312 30 1868 169 0 3 chr9 40548873 40549180 -101722264 - AluJo SINE Alu -6 306 1 335 322 108 5 chr9 40549393 40549607 -101721837 - L1ME4a LINE L1 -230 5891 5656 1532 248 62 57 chr9 40549607 40550136 -101721308 - MLT1K LTR MaLR 0 588 57 24 0 0 0 chr9 40550183 40550207 -101721237 + AT_rich Low_complexity Low_complexity 1 24 0 306 243 43 0 chr9 40550212 40550282 -101721162 + L1MC4 LINE L1 6636 6708 -1334 1952 117 3 26 chr9 40550307 40550616 -101720828 - AluSx SINE Alu -10 302 1 335 271 17 25 chr9 40550617 40550735 -101720709 - L1ME4a LINE L1 -515 5606 5490 408 124 191 22 chr9 40550809 40550852 -101720592 + MER63 DNA MER1_type 1 35 -801 1795 174 0 6 chr9 40550852 40551163 -101720281 + AluJo SINE Alu 1 309 -3 408 124 191 22 chr9 40551163 40551208 -101720236 + MER63 DNA MER1_type 35 730 -106 1749 230 81 82 chr9 40551256 40552031 -101719413 - HAL1 LINE L1 -78 2429 1654 1386 98 10 0 chr9 40552031 40552225 -101719219 - L1PA8A LINE L1 0 6131 5936 1749 230 81 82 chr9 40552225 40552374 -101719070 - HAL1 LINE L1 -853 1654 1506 235 258 55 49 chr9 40554646 40554663 -101716781 - L1MA10 LINE L1 -1 6333 6317 1220 179 95 15 chr9 40554663 40554936 -101716508 - L1ME1 LINE L1 -8 6158 5864 223 317 10 58 chr9 40554957 40555061 -101716383 + MIR SINE MIR 93 191 -71 2100 89 4 0 chr9 40555239 40555648 -101715796 - AluSx SINE Alu 0 410 1 2429 207 82 13 chr9 40556195 40556732 -101714712 - MER119 DNA MER1_type 0 583 10 190 333 42 73 chr9 40556821 40556917 -101714527 + L2 LINE L2 3159 3251 -21 846 177 0 0 chr9 40557029 40557176 -101714268 - AluJb SINE Alu -105 207 61 396 316 46 13 chr9 40557290 40557470 -101713974 + MIR SINE MIR 25 211 -51 1589 161 0 25 chr9 40558158 40558443 -101713001 - AluJb SINE Alu -14 298 21 186 167 0 0 chr9 40558510 40558546 -101712898 + GA-rich Low_complexity Low_complexity 3 38 0 663 281 129 9 chr9 40558617 40558834 -101712610 - MIR SINE MIR 0 262 20 272 247 31 52 chr9 40559453 40559550 -101711894 + L2 LINE L2 2917 3011 -261 591 204 227 0 chr9 40559559 40559735 -101711709 + MIR SINE MIR 39 254 -8 1262 149 13 120 chr9 40559861 40560236 -101711208 - L1MDa LINE L1 -3933 2607 2273 508 333 69 56 chr9 40560389 40560869 -101710575 - HAL1 LINE L1 -1205 1302 817 538 320 96 6 chr9 40561050 40561206 -101710238 + MER91A DNA MER1_type 5 174 -22 317 246 29 0 chr9 40561198 40561267 -101710177 + MER91A DNA MER1_type 120 190 0 * 425 242 81 67 chr9 40561807 40561956 -101709488 + MIR SINE MIR 47 197 -65 431 310 13 13 chr9 40563018 40563176 -101708268 - MIR3 SINE MIR -3 205 48 207 162 27 0 chr9 40563434 40563471 -101707973 + L2 LINE L2 3276 3313 0 262 319 219 18 chr9 40563487 40563656 -101707788 - MIR3 SINE MIR -2 206 4 2337 57 3 10 chr9 40564360 40564661 -101706783 + AluY SINE Alu 1 299 -12 395 295 31 23 chr9 40565059 40565188 -101706256 + MIR SINE MIR 56 185 -77 644 285 27 11 chr9 40565235 40565421 -101706023 - MIR SINE MIR -68 194 6 509 348 132 19 chr9 40565447 40566037 -101705407 - L2 LINE L2 -411 2903 2247 411 56 28 14 chr9 40566371 40566442 -101705002 - L1MD2 LINE L1 -1 6358 6287 574 299 109 50 chr9 40566995 40567316 -101704128 + L2 LINE L2 2913 3252 -20 234 294 84 42 chr9 40567378 40567592 -101703852 - L2 LINE L2 -1121 2193 1971 206 247 37 12 chr9 40567738 40567819 -101703625 + MIR SINE MIR 49 131 -77 27 81 0 0 chr9 40567938 40568000 -101703444 + GC_rich Low_complexity Low_complexity 1 62 0 26 0 0 0 chr9 40568031 40568057 -101703387 + GC_rich Low_complexity Low_complexity 1 26 0 286 214 110 81 chr9 40568814 40568987 -101702457 + MIR3 SINE MIR 16 193 -15 191 308 31 0 chr9 40569891 40569956 -101701488 - L2 LINE L2 -63 3250 3184 363 309 216 10 chr9 40570249 40570443 -101701001 + MIR SINE MIR 29 262 0 1071 163 19 47 chr9 40570890 40571105 -101700339 + AluJo SINE Alu 86 294 -18 691 256 105 43 chr9 40571179 40571503 -101699941 - L2 LINE L2 -1 3312 2969 974 285 14 2 chr9 40571532 40571782 -101699662 + MIR SINE MIR 3 252 -10 311 328 49 16 chr9 40571770 40571892 -101699552 - L2 LINE L2 -269 3003 2878 * 183 42 0 0 chr9 40572038 40572062 -101699382 + (CTG)n Simple_repeat Simple_repeat 2 25 0 2272 88 0 3 chr9 40572629 40572935 -101698509 - AluSg SINE Alu -5 305 1 188 300 108 58 chr9 40572963 40573083 -101698361 + L2 LINE L2 2924 3049 -223 511 280 132 47 chr9 40574946 40575264 -101696180 - L3 LINE CR1 -38 1539 1195 184 265 118 20 chr9 40575448 40575550 -101695894 + MIR SINE MIR 26 137 -71 1391 218 125 52 chr9 40575569 40575992 -101695452 - MLT1D LTR MaLR 0 505 43 1531 180 21 18 chr9 40575992 40576297 -101695147 - AluJo SINE Alu 0 306 1 1391 218 125 52 chr9 40576297 40576336 -101695108 - MLT1D LTR MaLR -462 43 8 183 42 0 0 chr9 40577048 40577072 -101694372 + (A)n Simple_repeat Simple_repeat 1 24 0 228 299 175 22 chr9 40577403 40577540 -101693904 - L2 LINE L2 -181 3091 2934 183 250 0 0 chr9 40577592 40577632 -101693812 - MIR3 SINE MIR -15 193 154 190 272 99 0 chr9 40577912 40577993 -101693451 + L2 LINE L2 3142 3230 -42 183 300 0 50 chr9 40578486 40578546 -101692898 + L3 LINE CR1 1197 1253 -324 301 184 40 53 chr9 40578594 40578670 -101692774 + L3 LINE CR1 1257 1331 -246 388 213 157 9 chr9 40578782 40578890 -101692554 + MIR3 SINE MIR 68 191 -17 1597 192 114 43 chr9 40578919 40578948 -101692496 - MSTD LTR MaLR 0 396 370 1109 77 0 184 chr9 40578948 40579181 -101692263 - 7SK RNA RNA -3 190 1 1597 192 114 43 chr9 40579181 40579520 -101691924 - MSTD LTR MaLR -26 370 2 239 258 118 43 chr9 40579527 40579620 -101691824 - L2 LINE L2 -36 3236 3137 241 314 25 41 chr9 40580618 40580739 -101690705 + L2 LINE L2 2897 3015 -257 2269 134 6 6 chr9 40580807 40581149 -101690295 + MER2 DNA MER2_type 2 343 -1 191 339 0 0 chr9 40581162 40581218 -101690226 + L2 LINE L2 3258 3313 0 252 77 0 0 chr9 40581413 40581452 -101689992 + (TATG)n Simple_repeat Simple_repeat 2 40 0 2439 52 13 0 chr9 40581452 40581758 -101689686 - L1PA8 LINE L1 -14 6158 5849 647 232 108 2 chr9 40581986 40582190 -101689254 + L1ME LINE L1 5540 5721 -400 251 277 31 0 chr9 40583399 40583464 -101687980 - L2 LINE L2 -13 3300 3234 1872 152 0 7 chr9 40584194 40584497 -101686947 - AluSx SINE Alu -11 301 1 1673 118 24 37 chr9 40584664 40584960 -101686484 + AluSx SINE Alu 13 304 -8 466 217 25 57 chr9 40585082 40585239 -101686205 + MIR SINE MIR 48 199 -63 468 298 64 21 chr9 40586199 40586387 -101685057 - MIR3 SINE MIR -1 207 12 763 205 114 0 chr9 40586569 40586735 -101684709 + MER5A DNA MER1_type 5 189 0 2480 70 3 6 chr9 40586964 40587277 -101684167 + AluSp SINE Alu 1 312 -1 251 340 44 60 chr9 40587772 40588022 -101683422 - L2 LINE L2 -408 2906 2661 319 317 130 96 chr9 40588697 40588943 -101682501 - L2 LINE L2 -1 3271 3035 2215 114 0 0 chr9 40588943 40589240 -101682204 + AluSx SINE Alu 6 302 -10 319 317 130 96 chr9 40589240 40589268 -101682176 - L2 LINE L2 -237 3035 3009 1167 132 36 59 chr9 40589268 40589488 -101681956 + L1MB8 LINE L1 5964 6178 0 319 317 130 96 chr9 40589488 40589651 -101681793 - L2 LINE L2 -263 3009 2818 926 233 4 75 chr9 40589689 40589906 -101681538 - MIR SINE MIR 0 262 31 2555 78 69 0 chr9 40589906 40590238 -101681206 - THE1A LTR MaLR 0 355 1 13142 81 1 0 chr9 40590238 40591816 -101679628 - THE1A-int LTR MaLR 0 1580 1 2781 94 8 0 chr9 40591816 40592168 -101679276 - THE1A LTR MaLR 0 355 1 926 233 4 75 chr9 40592168 40592201 -101679243 - MIR SINE MIR -228 34 28 386 292 64 81 chr9 40592235 40592398 -101679046 - L2 LINE L2 -556 2758 2594 1917 138 14 0 chr9 40592398 40592688 -101678756 + AluSx SINE Alu 5 298 -14 386 292 64 81 chr9 40592688 40592870 -101678574 - L2 LINE L2 -720 2594 2419 189 267 190 9 chr9 40592980 40593096 -101678348 - MIR3 SINE MIR -7 201 65 291 304 88 55 chr9 40594052 40594233 -101677211 + L2 LINE L2 3037 3223 -49 429 252 148 48 chr9 40594706 40594916 -101676528 - MIR SINE MIR -15 247 17 658 243 36 54 chr9 40595489 40595519 -101675925 + L2 LINE L2 3095 3124 -189 2427 104 0 0 chr9 40595519 40595827 -101675617 - AluSx SINE Alu -3 309 2 658 243 36 54 chr9 40595827 40596018 -101675426 + L2 LINE L2 3124 3312 -1 1596 203 18 6 chr9 40596624 40596954 -101674490 - L1MB8 LINE L1 -6 6172 5839 357 282 43 8 chr9 40596961 40597078 -101674366 - MIR SINE MIR -68 140 20 2015 143 0 9 chr9 40598195 40598510 -101672934 + AluSx SINE Alu 1 312 0 259 200 176 56 chr9 40599007 40599132 -101672312 - L2 LINE L2 -2 3311 3172 278 289 52 10 chr9 40599466 40599563 -101671881 + MIR SINE MIR 91 191 -71 248 316 92 10 chr9 40599772 40599870 -101671574 - MIR3 SINE MIR -91 117 12 581 191 60 2 chr9 40599882 40599999 -101671445 + MER5A DNA MER1_type 33 166 -23 2104 144 11 30 chr9 40600146 40600514 -101670930 - L1MB7 LINE L1 -19 6165 5805 216 204 45 114 chr9 40600657 40600745 -101670699 - MIR SINE MIR -73 189 108 183 313 121 11 chr9 40600786 40600968 -101670476 - L2 LINE L2 -262 3010 2809 535 251 183 6 chr9 40601504 40601679 -101669765 + MIR SINE MIR 48 253 -9 481 367 92 3 chr9 40601726 40602020 -101669424 - L2 LINE L2 -541 2773 2454 1978 145 3 3 chr9 40602023 40602320 -101669124 - AluJb SINE Alu -15 297 1 2419 56 0 30 chr9 40602628 40602932 -101668512 + AluY SINE Alu 1 295 -16 478 262 95 68 chr9 40603382 40603645 -101667799 + L3 LINE CR1 1144 1413 -164 509 334 54 61 chr9 40604276 40604668 -101666776 - L3 LINE CR1 -24 1553 1165 241 316 35 12 chr9 40604968 40605139 -101666305 + L1M3 LINE L1 5267 5441 -730 260 264 33 11 chr9 40605141 40605232 -101666212 + L1MC4a LINE L1 5840 5932 -1876 23 0 0 0 chr9 40605391 40605414 -101666030 + AT_rich Low_complexity Low_complexity 1 23 0 277 208 10 40 chr9 40605416 40605517 -101665927 + (TA)n Simple_repeat Simple_repeat 1 98 0 786 272 65 30 chr9 40605708 40606046 -101665398 + L1ME4a LINE L1 5535 5884 -237 5098 265 91 26 chr9 40606244 40607970 -101663474 - HAL1 LINE L1 -44 2463 596 2170 175 73 5 chr9 40607970 40608341 -101663103 - MSTD LTR MaLR 0 396 1 5098 265 91 26 chr9 40608341 40608545 -101662899 - HAL1 LINE L1 -1911 596 407 1284 163 34 0 chr9 40608638 40608877 -101662567 + L1MD3 LINE L1 7748 7994 -1 2185 98 0 11 chr9 40608889 40609202 -101662242 + AluSx SINE Alu 3 312 0 391 89 119 0 chr9 40609303 40609373 -101662071 - L1MB1 LINE L1 0 6168 6098 197 236 9 0 chr9 40610206 40610312 -101661132 + (CA)n Simple_repeat Simple_repeat 2 108 0 243 313 0 0 chr9 40610511 40610594 -101660850 + (CA)n Simple_repeat Simple_repeat 1 83 0 222 105 0 0 chr9 40610612 40610650 -101660794 + (CA)n Simple_repeat Simple_repeat 2 39 0 207 254 164 0 chr9 40611053 40611108 -101660336 - MIR SINE MIR -59 149 86 499 160 69 137 chr9 40611719 40611894 -101659550 - MER103 DNA DNA -2 164 2 691 169 8 0 chr9 40611938 40612056 -101659388 - L1MB7 LINE L1 -102 6082 5964 812 149 81 7 chr9 40612056 40612204 -101659240 - AluJb SINE Alu -12 300 142 757 120 28 237 chr9 40612204 40612495 -101658949 - L1MB7 LINE L1 -218 5966 5737 387 0 0 0 chr9 40612515 40612558 -101658886 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 2188 188 11 0 chr9 40612569 40612941 -101658503 - L1MB7 LINE L1 -433 5751 5376 554 293 158 79 chr9 40613301 40614118 -101657326 + L2 LINE L2 2412 3303 -10 301 157 0 6 chr9 40614936 40615000 -101656444 + AluY SINE Alu 1 42 -259 1796 68 0 17 chr9 40615000 40615237 -101656207 + AluY SINE Alu 79 311 0 2235 104 3 0 chr9 40615475 40615762 -101655682 + AluSg SINE Alu 1 288 -22 276 265 52 102 chr9 40615815 40616140 -101655304 - L1MB7 LINE L1 -1059 5087 4779 2247 109 10 13 chr9 40616190 40616369 -101655075 - AluSx SINE Alu 0 312 133 2333 100 0 10 chr9 40616369 40616679 -101654765 - AluSp SINE Alu -6 307 1 2247 109 10 13 chr9 40616679 40616812 -101654632 - AluSx SINE Alu -179 133 1 2176 122 0 0 chr9 40616962 40617256 -101654188 - AluSx SINE Alu -14 298 5 248 348 11 0 chr9 40617432 40617524 -101653920 + (CA)n Simple_repeat Simple_repeat 2 94 0 285 175 35 18 chr9 40617527 40617584 -101653860 - MER4-int LTR ERV1 -5442 1156 1099 582 258 177 71 chr9 40618981 40619108 -101652336 - L2 LINE L2 -185 3087 2975 492 99 0 0 chr9 40619108 40619179 -101652265 + (TG)n Simple_repeat Simple_repeat 2 72 0 582 258 177 71 chr9 40619179 40619649 -101651795 - L2 LINE L2 -297 2975 2431 283 361 64 68 chr9 40619904 40620170 -101651274 - L2 LINE L2 0 3272 3008 279 361 62 0 chr9 40620627 40620724 -101650720 - L2 LINE L2 -20 3252 3150 2811 159 80 19 chr9 40621153 40621719 -101649725 - L1MB8 LINE L1 -1 6177 5578 1524 148 69 10 chr9 40621814 40622119 -101649325 + Charlie5 DNA MER1_type 2302 2624 0 567 262 47 37 chr9 40622172 40622363 -101649081 + MIR SINE MIR 70 262 0 22 88 0 0 chr9 40622420 40622477 -101648967 + AT_rich Low_complexity Low_complexity 1 57 0 1082 182 141 12 chr9 40622967 40623209 -101648235 - AluSg SINE Alu -13 297 25 1610 150 68 14 chr9 40623391 40623713 -101647731 + AluSx SINE Alu 1 312 0 414 57 0 0 chr9 40624628 40624681 -101646763 + (TCCA)n Simple_repeat Simple_repeat 4 56 0 196 274 20 0 chr9 40624683 40624734 -101646710 - L2 LINE L2 -4 3268 3217 194 271 0 71 chr9 40624746 40624816 -101646628 + L2 LINE L2 2996 3060 -212 241 275 44 44 chr9 40626441 40626532 -101644912 - L2 LINE L2 -27 3245 3155 22 0 0 0 chr9 40626971 40626993 -101644451 + AT_rich Low_complexity Low_complexity 1 22 0 494 172 0 0 chr9 40627043 40627130 -101644314 - FLAM_C SINE Alu -3 140 54 1046 127 0 0 chr9 40627130 40627280 -101644164 + AluSg/x SINE Alu 163 312 0 2264 101 24 0 chr9 40628380 40628676 -101642768 + AluSg SINE Alu 1 303 -7 247 284 101 55 chr9 40629393 40629502 -101641942 + MIR SINE MIR 79 192 -70 612 303 71 64 chr9 40629813 40630051 -101641393 + L1M4 LINE L1 2719 2954 -3192 2108 143 0 0 chr9 40630051 40630351 -101641093 - AluSq SINE Alu -13 300 1 612 303 71 64 chr9 40630351 40630631 -101640813 + L1M4 LINE L1 2954 3241 -2905 334 306 123 13 chr9 40630697 40630998 -101640446 + L1M4 LINE L1 4499 4832 -1314 1304 169 94 12 chr9 40631024 40631278 -101640166 + AluJb SINE Alu 1 275 -37 185 206 0 16 chr9 40631332 40631395 -101640049 + (TA)n Simple_repeat Simple_repeat 1 62 0 2146 116 0 3 chr9 40632272 40632643 -101638801 - AluSx SINE Alu 0 370 1 288 342 92 27 chr9 40632906 40633090 -101638354 - MIR SINE MIR -61 201 6 194 270 0 63 chr9 40633509 40633572 -101637872 - L3 LINE CR1 -151 1426 1368 752 291 87 56 chr9 40633638 40634085 -101637359 - L3 LINE CR1 -357 1220 760 646 302 199 19 chr9 40634594 40634971 -101636473 - L3 LINE CR1 -859 718 274 21 0 0 31 chr9 40634989 40635009 -101636435 + AT_rich Low_complexity Low_complexity 1 21 -10 408 88 0 0 chr9 40635009 40635066 -101636378 + (TG)n Simple_repeat Simple_repeat 2 58 0 21 0 0 31 chr9 40635066 40635077 -101636367 + AT_rich Low_complexity Low_complexity 21 31 0 2196 131 0 0 chr9 40635077 40635375 -101636069 - AluSx SINE Alu -14 298 1 285 302 112 17 chr9 40636271 40636387 -101635057 - MIR3 SINE MIR -9 199 73 273 287 116 31 chr9 40637346 40637475 -101633969 - MIR SINE MIR -122 140 1 594 96 0 0 chr9 40637995 40638078 -101633366 + AluSc SINE Alu 2 84 -225 2412 61 0 17 chr9 40638078 40638374 -101633070 + AluY SINE Alu 1 291 -20 1854 78 0 0 chr9 40638372 40638590 -101632854 + AluSc SINE Alu 71 288 -21 * 821 348 91 27 chr9 40639076 40639634 -101631810 + L1ME4a LINE L1 5354 5947 -174 540 174 20 0 chr9 40639925 40640023 -101631421 + AluSg/x SINE Alu 202 301 -9 1427 132 0 5 chr9 40640102 40640307 -101631137 - AluSg/x SINE Alu -12 298 95 1014 39 0 0 chr9 40640473 40640601 -101630843 - L1PA3 LINE L1 0 6155 6028 1724 160 11 4 chr9 40641271 40641406 -101630038 + AluSx SINE Alu 1 134 -178 2385 101 0 19 chr9 40641406 40641724 -101629720 + AluSx SINE Alu 1 312 0 1724 160 11 4 chr9 40641724 40641863 -101629581 + AluSx SINE Alu 134 277 -35 228 182 0 23 chr9 40642235 40642279 -101629165 - MIR SINE MIR -79 129 87 301 312 11 11 chr9 40643101 40643194 -101628250 + (CA)n Simple_repeat Simple_repeat 2 94 0 524 266 111 35 chr9 40643354 40643580 -101627864 - MIR SINE MIR -18 244 2 189 245 20 20 chr9 40644024 40644073 -101627371 - L2 LINE L2 -2 3270 3222 181 132 79 0 chr9 40644039 40644077 -101627367 - MIR SINE MIR -10 252 212 * 2232 102 0 3 chr9 40644110 40644427 -101627017 + AluSx SINE Alu 1 316 0 249 338 120 22 chr9 40644707 40644932 -101626512 - L2 LINE L2 -350 2964 2718 933 197 161 0 chr9 40644965 40645158 -101626286 - MER58A DNA MER1_type 0 224 1 355 303 62 28 chr9 40645613 40645758 -101625686 - L2 LINE L2 -1 3312 3163 710 255 85 6 chr9 40645771 40645970 -101625474 - MIR SINE MIR -12 250 38 405 289 31 69 chr9 40645987 40646247 -101625197 - L2 LINE L2 -187 3126 2877 2380 104 0 0 chr9 40646374 40646673 -101624771 + AluSx SINE Alu 1 299 -13 327 95 4 13 chr9 40646724 40646790 -101624654 + AluSq/x SINE Alu 87 133 -170 2152 143 0 0 chr9 40646794 40647102 -101624342 + AluSx SINE Alu 1 308 -4 369 208 0 69 chr9 40647735 40647836 -101623608 - MIR SINE MIR -94 168 75 327 250 38 12 chr9 40648273 40648353 -101623091 + L1MC4a LINE L1 5853 5934 -1874 328 290 142 6 chr9 40649059 40649228 -101622216 - MIR3 SINE MIR -6 202 11 2140 148 0 3 chr9 40649283 40649594 -101621850 + AluSx SINE Alu 1 310 -2 245 243 100 0 chr9 40649612 40649682 -101621762 - MIR SINE MIR -65 143 67 440 290 104 5 chr9 40649713 40649913 -101621531 - MIR SINE MIR -3 259 41 302 329 7 48 chr9 40650610 40650756 -101620688 + MER5B DNA MER1_type 9 148 -30 * 360 266 25 57 chr9 40650625 40650783 -101620661 - MER5A DNA MER1_type -23 166 14 227 271 14 14 chr9 40651664 40651734 -101619710 - L2 LINE L2 -15 3257 3188 2215 73 4 7 chr9 40653697 40653972 -101617472 - AluY SINE Alu -15 296 23 235 117 0 33 chr9 40654086 40654146 -101617298 + (CA)n Simple_repeat Simple_repeat 1 58 0 992 102 7 7 chr9 40654328 40654465 -101616979 + AluSp/q SINE Alu 165 301 -12 315 121 0 0 chr9 40654743 40654801 -101616643 + (TG)n Simple_repeat Simple_repeat 1 58 0 2456 95 3 0 chr9 40655457 40655762 -101615682 + AluSq SINE Alu 1 306 -7 1044 208 45 49 chr9 40655973 40656250 -101615194 + MER63B DNA MER1_type 7 284 -778 2203 128 3 0 chr9 40656250 40656554 -101614890 - AluSx SINE Alu -7 305 1 1044 208 45 49 chr9 40656554 40656584 -101614860 + MER63B DNA MER1_type 284 313 -123 249 349 60 36 chr9 40656621 40656787 -101614657 - L2 LINE L2 -153 3119 2950 213 329 67 13 chr9 40657181 40657330 -101614114 - L2 LINE L2 -477 2837 2681 301 293 27 54 chr9 40657478 40657625 -101613819 + MER5A DNA MER1_type 24 166 -23 * 319 254 19 67 chr9 40657509 40657641 -101613803 - MER5A DNA MER1_type -45 144 6 231 270 45 27 chr9 40659031 40659142 -101612302 - L2 LINE L2 -212 3060 2948 378 0 0 0 chr9 40659366 40659408 -101612036 + (CA)n Simple_repeat Simple_repeat 2 43 0 524 293 88 92 chr9 40659524 40660065 -101611379 + L2 LINE L2 2726 3272 0 198 0 0 0 chr9 40660303 40660325 -101611119 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 258 209 7 196 chr9 40660474 40660532 -101610912 - MER5A DNA MER1_type -9 180 167 2250 132 0 0 chr9 40660532 40660835 -101610609 + AluSx SINE Alu 1 303 -9 258 209 7 196 chr9 40660835 40660929 -101610515 - MER5A DNA MER1_type -22 167 57 190 294 24 71 chr9 40661153 40661238 -101610206 - MIR SINE MIR -14 248 168 351 0 0 0 chr9 40661436 40661475 -101609969 + (T)n Simple_repeat Simple_repeat 1 39 0 913 178 18 0 chr9 40661666 40661829 -101609615 + FRAM SINE Alu 1 166 0 2197 97 38 3 chr9 40661832 40662121 -101609323 + AluSx SINE Alu 1 299 -13 401 220 129 38 chr9 40662127 40662259 -101609185 - MIR SINE MIR -106 156 13 258 250 180 40 chr9 40664858 40664958 -101606486 - L2 LINE L2 -4 3268 3155 364 271 12 0 chr9 40665483 40665568 -101605876 + MIR SINE MIR 87 172 -90 2314 109 0 7 chr9 40666300 40666602 -101604842 - AluSq SINE Alu -13 300 1 267 185 259 0 chr9 40666609 40666690 -101604754 + MIR SINE MIR 50 151 -111 223 214 0 0 chr9 40667519 40667561 -101603883 - L2 LINE L2 -10 3303 3262 482 324 188 21 chr9 40667600 40668026 -101603418 - L2 LINE L2 -12 3301 2805 2475 53 13 0 chr9 40668410 40668709 -101602735 + AluY SINE Alu 1 303 -8 877 120 0 0 chr9 40668773 40668890 -101602554 + AluJb SINE Alu 1 117 -195 26 64 0 0 chr9 40668890 40668937 -101602507 + AT_rich Low_complexity Low_complexity 1 47 0 799 153 51 56 chr9 40669423 40669619 -101601825 - MER4E LTR ERV1 -428 351 157 2091 129 35 31 chr9 40669619 40670075 -101601369 + pTR5 LTR ERV1 743 1200 -1238 436 145 195 101 chr9 40670088 40670247 -101601197 + MER4D LTR ERV1 76 249 -623 1821 182 114 47 chr9 40670255 40670745 -101600699 - LTR12 LTR ERV1 0 714 192 194 260 83 10 chr9 40671609 40671705 -101599739 + L2 LINE L2 2393 2495 -819 368 219 24 0 chr9 40671863 40671945 -101599499 - L1MC2 LINE L1 -9 6335 6252 477 272 122 0 chr9 40672055 40672235 -101599209 + L2 LINE L2 2855 3056 -257 221 333 13 0 chr9 40672959 40673034 -101598410 - MIR SINE MIR -86 122 47 340 254 169 0 chr9 40673134 40673252 -101598192 - MIR SINE MIR -37 225 88 221 279 15 15 chr9 40673585 40673653 -101597791 + L3 LINE CR1 1337 1404 -173 1984 136 7 39 chr9 40674250 40674559 -101596885 + AluJb SINE Alu 1 299 -13 206 336 122 15 chr9 40674613 40674744 -101596700 - MIR3 SINE MIR -59 149 5 547 226 40 8 chr9 40676642 40676766 -101594678 + L2 LINE L2 3185 3312 -1 1196 295 185 10 chr9 40676927 40677928 -101593516 + L2 LINE L2 2038 3219 -94 999 193 6 0 chr9 40679608 40679779 -101591665 + FRAM SINE Alu 1 171 -5 1922 157 7 7 chr9 40679801 40680100 -101591344 + AluJo SINE Alu 1 299 -13 491 302 100 79 chr9 40680412 40680615 -101590829 + L2 LINE L2 2839 3036 -277 2361 99 10 0 chr9 40680615 40680919 -101590525 - AluSx SINE Alu 0 312 6 491 302 100 79 chr9 40680919 40681156 -101590288 + L2 LINE L2 3036 3288 -25 183 211 39 19 chr9 40681763 40681815 -101589629 - MIR SINE MIR -65 143 91 393 244 110 8 chr9 40682062 40682189 -101589255 - MIR3 SINE MIR -26 182 43 355 335 133 21 chr9 40682412 40682794 -101588650 + L3 LINE CR1 1083 1507 -70 219 202 78 0 chr9 40683864 40683942 -101587502 + MIR SINE MIR 71 137 -71 202 279 184 27 chr9 40684088 40684235 -101587209 + MIR3 SINE MIR 39 208 0 198 344 82 45 chr9 40684974 40685326 -101586118 - L2 LINE L2 -5 3267 2903 226 305 37 37 chr9 40685559 40685641 -101585803 - MIR3 SINE MIR -18 190 109 226 322 53 66 chr9 40687276 40687428 -101584016 + MIR SINE MIR 19 168 -40 575 251 139 27 chr9 40688543 40688766 -101582678 + MIR SINE MIR 9 256 -6 194 246 43 29 chr9 40689043 40689112 -101582332 + MIR SINE MIR 83 152 -110 259 326 47 0 chr9 40689278 40689364 -101582080 - MIR3 SINE MIR -24 184 95 281 281 0 0 chr9 40689907 40689971 -101581473 + MIR SINE MIR 41 104 -104 280 312 55 22 chr9 40690599 40690758 -101580686 - MIR3 SINE MIR -61 147 8 194 336 106 9 chr9 40692085 40692198 -101579246 - MIR3 SINE MIR -20 188 65 25 0 0 0 chr9 40692664 40692689 -101578755 + AT_rich Low_complexity Low_complexity 1 25 0 345 164 16 0 chr9 40693269 40693330 -101578114 + U7 snRNA snRNA 1 62 -1 208 260 40 0 chr9 40693486 40693536 -101577908 + L2 LINE L2 3207 3258 -14 333 287 79 18 chr9 40693628 40693792 -101577652 + L1ME4a LINE L1 5937 6110 -11 1958 80 0 50 chr9 40693794 40694082 -101577362 - AluSx SINE Alu 0 310 36 517 222 179 31 chr9 40694258 40694420 -101577024 + MIR SINE MIR 5 190 -72 1879 136 0 11 chr9 40695444 40695716 -101575728 + AluJo SINE Alu 8 276 -36 513 338 143 7 chr9 40695959 40696384 -101575060 + L3 LINE CR1 1049 1532 -45 292 190 17 0 chr9 40696384 40696442 -101575002 - MER5A DNA MER1_type -3 186 128 241 214 225 34 chr9 40696731 40696820 -101574624 - MIR3 SINE MIR -34 174 112 4416 182 28 41 chr9 40697043 40697123 -101574321 - L1MA9 LINE L1 -29 6283 6204 1573 202 0 11 chr9 40697123 40697400 -101574044 + AluJo SINE Alu 1 274 -38 4416 182 28 41 chr9 40697400 40697734 -101573710 - L1MA9 LINE L1 -108 6204 5867 2427 86 30 0 chr9 40697734 40698038 -101573406 - AluSq SINE Alu 0 313 1 4416 182 28 41 chr9 40698038 40699352 -101572092 - L1MA9 LINE L1 -445 5867 4579 278 272 80 20 chr9 40699733 40699881 -101571563 + MIR3 SINE MIR 94 250 -12 1927 158 13 7 chr9 40699918 40700216 -101571228 - AluJb SINE Alu -12 300 1 206 307 40 0 chr9 40701327 40701402 -101570042 - MIR SINE MIR -70 192 115 563 184 158 53 chr9 40701427 40701617 -101569827 - MER20 DNA MER1_type -9 210 1 197 178 22 0 chr9 40702076 40702121 -101569323 + GA-rich Low_complexity Low_complexity 2 47 0 211 217 50 0 chr9 40702945 40703005 -101568439 + MIR SINE MIR 85 147 -115 241 298 71 10 chr9 40703448 40703581 -101567863 + MIR SINE MIR 37 183 -69 288 130 0 0 chr9 40704879 40704925 -101566519 + (TGGA)n Simple_repeat Simple_repeat 1 46 0 386 329 116 23 chr9 40705149 40705365 -101566079 + MIR SINE MIR 27 262 0 250 247 56 11 chr9 40706877 40706966 -101564478 + MIR SINE MIR 33 125 -83 191 284 45 0 chr9 40707148 40707215 -101564229 - L3 LINE CR1 -2 1575 1506 415 230 171 0 chr9 40709411 40709563 -101561881 - MLT1J LTR MaLR -333 178 1 540 0 0 0 chr9 40709702 40709762 -101561682 + (TTTTG)n Simple_repeat Simple_repeat 2 61 0 207 114 0 0 chr9 40710705 40710740 -101560704 + (TG)n Simple_repeat Simple_repeat 1 35 0 232 289 26 0 chr9 40711311 40711387 -101560057 - MIR SINE MIR -121 141 64 267 146 0 73 chr9 40711506 40711616 -101559828 + (CA)n Simple_repeat Simple_repeat 1 102 0 1738 170 7 10 chr9 40714144 40714444 -101557000 - AluJb SINE Alu 0 312 14 288 254 250 41 chr9 40714676 40714896 -101556548 - L2 LINE L2 -4 3268 3003 192 231 0 0 chr9 40715948 40716000 -101555444 - MIR SINE MIR -80 128 77 2359 93 3 0 chr9 40716702 40717002 -101554442 + AluSx SINE Alu 1 301 -11 2177 109 28 0 chr9 40717023 40717308 -101554136 + AluSx SINE Alu 1 293 -19 416 265 137 17 chr9 40717349 40717604 -101553840 - L1ME4a LINE L1 -57 6064 5841 2393 101 0 0 chr9 40717604 40717902 -101553542 - AluSq SINE Alu -15 298 1 416 265 137 17 chr9 40717902 40718108 -101553336 - L1ME4a LINE L1 -280 5841 5517 276 317 117 0 chr9 40718547 40718692 -101552752 + MIR SINE MIR 66 227 -35 2112 98 0 0 chr9 40719044 40719309 -101552135 + AluSq SINE Alu 1 265 -48 283 208 0 0 chr9 40719521 40719574 -101551870 + L2 LINE L2 3256 3308 -5 1862 149 0 36 chr9 40719691 40719992 -101551452 + AluJb SINE Alu 1 290 -22 2339 113 0 3 chr9 40719994 40720305 -101551139 + AluSx SINE Alu 1 310 -2 218 330 110 10 chr9 40720613 40720726 -101550718 - MIR SINE MIR -61 147 25 325 333 0 0 chr9 40720778 40720874 -101550570 - MER5A DNA MER1_type -44 145 50 193 276 51 51 chr9 40721729 40721827 -101549617 - MER5A DNA MER1_type -6 183 86 510 165 0 51 chr9 40721834 40722010 -101549434 + (TA)n Simple_repeat Simple_repeat 1 167 0 1859 135 38 0 chr9 40722016 40722283 -101549161 - AluJb SINE Alu -23 289 13 234 230 294 48 chr9 40722325 40722451 -101548993 - MER5A DNA MER1_type 0 189 33 452 184 68 142 chr9 40722538 40722728 -101548716 + MER5B DNA MER1_type 3 178 0 234 264 99 99 chr9 40723458 40723791 -101547653 - L2 LINE L2 -5 3267 2935 188 281 51 84 chr9 40723825 40724003 -101547441 - L2 LINE L2 -463 2851 2680 264 332 57 0 chr9 40725263 40725381 -101546063 - MIR SINE MIR -64 144 20 260 230 35 69 chr9 40726417 40726504 -101544940 - MIR3 SINE MIR -14 194 111 2317 93 7 3 chr9 40728569 40728860 -101542584 + AluSx SINE Alu 1 292 -20 1669 153 17 33 chr9 40728879 40729179 -101542265 + AluJb SINE Alu 5 299 -13 1378 122 146 76 chr9 40729330 40729573 -101541871 + AluJo SINE Alu 5 230 -82 2091 120 3 17 chr9 40729573 40729873 -101541571 - AluSc SINE Alu -13 296 1 1378 122 146 76 chr9 40729873 40729900 -101541544 + AluJo SINE Alu 230 254 -58 848 143 0 0 chr9 40729900 40730033 -101541411 + FLAM_C SINE Alu 1 133 0 1378 122 146 76 chr9 40730033 40730049 -101541395 + AluJo SINE Alu 254 312 0 254 329 46 69 chr9 40730097 40730386 -101541058 + L1 LINE L1 3422 3697 -2449 1724 162 62 0 chr9 40730386 40730658 -101540786 + AluJo SINE Alu 14 302 -10 254 329 46 69 chr9 40730658 40730845 -101540599 + L1 LINE L1 3697 3887 -2259 572 300 103 21 chr9 40730855 40731088 -101540356 - MIR SINE MIR -3 259 8 2025 140 3 40 chr9 40731292 40731468 -101539976 - AluSx SINE Alu -2 310 150 2498 81 3 0 chr9 40731468 40731764 -101539680 - AluSp SINE Alu -16 297 1 2025 140 3 40 chr9 40731764 40731909 -101539535 - AluSx SINE Alu -162 150 1 31 18 0 53 chr9 40732351 40732408 -101539036 + AT_rich Low_complexity Low_complexity 1 54 0 580 304 97 62 chr9 40732419 40732683 -101538761 + L1 LINE L1 4110 4396 -1750 827 146 0 0 chr9 40732683 40732813 -101538631 + FLAM_C SINE Alu 1 130 -3 580 304 97 62 chr9 40732813 40732982 -101538462 + L1 LINE L1 4396 4558 -1588 2219 119 0 0 chr9 40733231 40733524 -101537920 - AluSq SINE Alu -20 293 1 1924 149 7 0 chr9 40733944 40734219 -101537225 + AluSx SINE Alu 21 297 -15 1764 183 7 3 chr9 40734540 40734830 -101536614 + AluJo SINE Alu 4 294 -18 3288 94 25 0 chr9 40734914 40735402 -101536042 + L1PA13 LINE L1 5646 6145 -18 2200 101 10 10 chr9 40735413 40735720 -101535724 + AluSq SINE Alu 1 307 -6 1988 145 7 23 chr9 40736860 40736998 -101534446 + AluJb SINE Alu 1 140 -172 2271 124 0 0 chr9 40736998 40737297 -101534147 + AluSx SINE Alu 1 299 -13 1988 145 7 23 chr9 40737297 40737468 -101533976 + AluJb SINE Alu 140 305 -7 5802 43 15 1 chr9 40738172 40738842 -101532602 - SVA Other Other -3 1383 705 683 160 56 7 chr9 40739200 40739327 -101532117 - L1M3 LINE L1 -427 5744 5608 1467 201 35 7 chr9 40739327 40739616 -101531828 - AluJo SINE Alu -15 297 1 683 160 56 7 chr9 40739616 40739632 -101531812 - L1M3 LINE L1 -563 5608 5594 1725 181 3 3 chr9 40739647 40739935 -101531509 - AluJo SINE Alu -24 288 1 287 241 23 0 chr9 40739985 40740072 -101531372 + (TA)n Simple_repeat Simple_repeat 2 90 0 247 286 211 45 chr9 40740355 40740554 -101530890 + MIR SINE MIR 11 242 -20 196 293 0 40 chr9 40740706 40740781 -101530663 + L2 LINE L2 3242 3313 0 970 188 158 46 chr9 40740885 40741258 -101530186 - Charlie1 DNA MER1_type -1 2760 2346 307 275 14 0 chr9 40741260 40741329 -101530115 - Charlie1 DNA MER1_type -2691 70 1 2456 64 0 7 chr9 40742705 40743003 -101528441 - AluSg SINE Alu -14 296 1 1210 39 0 59 chr9 40743003 40743156 -101528288 - AluY SINE Alu -167 144 1 361 103 59 0 chr9 40744354 40744422 -101527022 - MER4B-int LTR ERV1 -6686 72 1 903 40 0 0 chr9 40744444 40744544 -101526900 + AluY SINE Alu 96 195 -116 234 0 0 0 chr9 40744669 40744695 -101526749 + (T)n Simple_repeat Simple_repeat 1 26 0 26 30 0 0 chr9 40746610 40746643 -101524801 + AT_rich Low_complexity Low_complexity 1 33 0 2373 82 0 3 chr9 40746893 40747187 -101524257 + AluSx SINE Alu 1 293 -19 1731 150 68 0 chr9 40748384 40748664 -101522780 - AluJb SINE Alu -13 299 1 21 0 0 0 chr9 40748819 40748840 -101522604 + AT_rich Low_complexity Low_complexity 1 21 0 2202 75 11 0 chr9 40749260 40749568 -101521876 - AluSp SINE Alu 0 311 1 328 267 112 49 chr9 40749675 40749713 -101521731 + L2 LINE L2 2652 2686 -586 1877 112 49 7 chr9 40749713 40750000 -101521444 - AluSx SINE Alu -13 299 1 328 267 112 49 chr9 40750000 40750362 -101521082 + L2 LINE L2 2686 3092 -180 536 124 216 0 chr9 40751120 40751217 -101520227 + FLAM_C SINE Alu 1 118 -25 1949 145 0 0 chr9 40752004 40752312 -101519132 - AluJb SINE Alu 0 308 1 819 142 0 57 chr9 40752339 40752480 -101518964 + FLAM_C SINE Alu 1 133 0 1468 165 36 93 chr9 40752647 40752699 -101518745 - MLT1A2 LTR MaLR 0 374 321 2248 123 21 9 chr9 40752699 40753032 -101518412 + MER1B DNA MER1_type 1 337 0 1468 165 36 93 chr9 40753032 40753343 -101518101 - MLT1A2 LTR MaLR -53 321 32 884 136 8 8 chr9 40754161 40754293 -101517151 - FLAM_C SINE Alu -11 132 1 206 273 153 53 chr9 40754691 40754841 -101516603 + L2 LINE L2 3047 3211 -61 565 239 88 34 chr9 40754974 40755033 -101516411 + L1ME2 LINE L1 5898 5952 -212 189 0 0 0 chr9 40755033 40755054 -101516390 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 565 239 88 34 chr9 40755054 40755233 -101516211 + L1ME2 LINE L1 5952 6149 -15 2265 104 0 3 chr9 40755338 40755637 -101515807 + AluSx SINE Alu 1 298 -14 2377 84 0 3 chr9 40756047 40756356 -101515088 + AluY SINE Alu 2 309 -2 1910 114 66 4 chr9 40756732 40757005 -101514439 - AluSx SINE Alu -22 290 1 2216 121 3 0 chr9 40757277 40757584 -101513860 - AluSq SINE Alu -5 308 1 895 152 62 17 chr9 40757800 40757978 -101513466 + MER5A DNA MER1_type 3 188 -1 1589 140 49 62 chr9 40758711 40759019 -101512425 - AluJb SINE Alu -7 305 2 607 253 91 40 chr9 40759330 40759528 -101511916 + MIR SINE MIR 29 236 -26 505 190 50 101 chr9 40759528 40759707 -101511737 + MLT1D LTR MaLR 5 174 -331 865 122 8 15 chr9 40759714 40759845 -101511599 + AluJo SINE Alu 7 136 -176 1407 145 54 0 chr9 40759878 40760119 -101511325 + MLT1D LTR MaLR 252 505 0 23 0 0 0 chr9 40760169 40760192 -101511252 + AT_rich Low_complexity Low_complexity 1 23 0 349 170 109 41 chr9 40760806 40760953 -101510491 + Charlie7 DNA MER1_type 2443 2599 -13 725 189 26 99 chr9 40761557 40761678 -101509766 - MER45A DNA AcHobo -1404 177 73 1994 152 7 10 chr9 40761678 40761987 -101509457 - AluJo SINE Alu -4 308 1 725 189 26 99 chr9 40761987 40762056 -101509388 - MER45A DNA AcHobo -1508 73 1 209 299 45 30 chr9 40762106 40762173 -101509271 + L2 LINE L2 3200 3267 -5 649 203 49 0 chr9 40762369 40762492 -101508952 - L2 LINE L2 -1 3312 3184 21 36 0 0 chr9 40762737 40762765 -101508679 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr9 40763556 40763577 -101507867 + AT_rich Low_complexity Low_complexity 1 21 0 545 248 100 61 chr9 40765016 40765246 -101506198 + MIR SINE MIR 8 246 -16 2122 115 0 7 chr9 40765421 40765738 -101505706 - AluSx SINE Alu 0 315 1 2050 138 0 0 chr9 40765740 40766030 -101505414 - AluJb SINE Alu -18 294 5 500 258 126 47 chr9 40766436 40766626 -101504818 + MIR3 SINE MIR 3 207 -1 2505 76 0 0 chr9 40766688 40766992 -101504452 - AluSg SINE Alu -6 304 1 386 297 50 22 chr9 40767024 40767206 -101504238 + MER5A DNA MER1_type 3 189 0 248 273 0 0 chr9 40768184 40768239 -101503205 + GA-rich Low_complexity Low_complexity 4 58 0 243 0 0 0 chr9 40769518 40769545 -101501899 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 184 222 0 22 chr9 40772357 40772402 -101499042 - MIR SINE MIR -51 211 168 681 141 0 62 chr9 40773241 40773369 -101498075 - FLAM_A SINE Alu -9 124 5 1913 172 0 7 chr9 40773861 40774169 -101497275 - AluJb SINE Alu -6 306 1 870 136 0 36 chr9 40774170 40774310 -101497134 - AluJo SINE Alu -177 135 1 1141 181 85 11 chr9 40775351 40775622 -101495822 + L1MA6 LINE L1 6005 6295 -5 1765 142 7 55 chr9 40775630 40775940 -101495504 + AluJo SINE Alu 1 295 -17 731 159 53 14 chr9 40775956 40776164 -101495280 + Charlie2 DNA MER1_type 2248 2463 -399 454 157 4 2 chr9 40776169 40776392 -101495052 + AluJ SINE Alu 1 261 -51 1279 98 0 0 chr9 40776605 40776768 -101494676 - AluSp SINE Alu -11 302 140 259 93 0 47 chr9 40776772 40776815 -101494629 - AluSp SINE Alu -134 169 129 966 83 0 0 chr9 40776869 40776990 -101494454 - AluSq SINE Alu -14 299 179 22 0 0 0 chr9 40776990 40777012 -101494432 + AT_rich Low_complexity Low_complexity 1 22 0 682 113 119 62 chr9 40777012 40777071 -101494373 - L1MA8 LINE L1 -38 6253 6199 324 0 0 0 chr9 40777071 40777107 -101494337 + (TA)n Simple_repeat Simple_repeat 1 36 0 682 113 119 62 chr9 40777107 40777224 -101494220 - L1MA8 LINE L1 -92 6199 6067 1331 106 6 6 chr9 40777229 40777409 -101494035 - AluSq SINE Alu -133 180 1 386 284 62 67 chr9 40777412 40777440 -101494004 - HAL1 LINE L1 -863 1644 1617 1850 177 0 3 chr9 40777440 40777723 -101493721 - AluJo SINE Alu -30 282 1 386 284 62 67 chr9 40777723 40777888 -101493556 - HAL1 LINE L1 -890 1617 1452 329 286 39 45 chr9 40777899 40778219 -101493225 - L1MEd LINE L1 -4871 1248 1010 2156 98 25 0 chr9 40778220 40778523 -101492921 - AluSx SINE Alu 0 312 3 1363 189 16 4 chr9 40778558 40778806 -101492638 + AluJo SINE Alu 1 251 -61 1992 126 0 0 chr9 40778806 40779076 -101492368 - AluSx SINE Alu -42 270 1 3546 111 48 44 chr9 40779096 40779155 -101492289 - L1MA8 LINE L1 -38 6253 6196 504 0 0 0 chr9 40779155 40779211 -101492233 + (TA)n Simple_repeat Simple_repeat 1 56 0 3546 111 48 44 chr9 40779211 40779837 -101491607 - L1MA8 LINE L1 -95 6196 5565 394 265 92 62 chr9 40779837 40779915 -101491529 - L1MEc LINE L1 -1842 4304 4230 748 208 188 21 chr9 40779915 40779958 -101491486 + MER58A DNA MER1_type 1 35 -2385 1671 184 0 38 chr9 40779958 40780137 -101491307 - AluJo SINE Alu -9 303 140 2185 107 10 7 chr9 40780137 40780437 -101491007 - AluSg SINE Alu -9 301 1 1671 184 0 38 chr9 40780437 40780572 -101490872 - AluJo SINE Alu -172 140 1 748 208 188 21 chr9 40780572 40780720 -101490724 + MER58A DNA MER1_type 35 224 0 394 265 92 62 chr9 40780720 40780977 -101490467 - L1MEc LINE L1 -1916 4230 3959 3348 172 16 33 chr9 40780986 40781046 -101490398 - L1MB7 LINE L1 -13 6171 6111 2373 86 0 3 chr9 40781046 40781348 -101490096 - AluSx SINE Alu -11 301 1 3348 172 16 33 chr9 40781348 40781983 -101489461 - L1MB7 LINE L1 -73 6111 5488 3124 217 91 51 chr9 40781985 40782757 -101488687 - L1MB7 LINE L1 -1596 4550 3810 2303 123 3 0 chr9 40782757 40783066 -101488378 - AluSq SINE Alu -3 310 1 3124 217 91 51 chr9 40783066 40783282 -101488162 - L1MB7 LINE L1 -2336 3810 3604 1729 110 4 0 chr9 40783282 40783509 -101487935 + AluSq SINE Alu 1 228 -85 3124 217 91 51 chr9 40783509 40783745 -101487699 - L1MB7 LINE L1 -2542 3604 3277 423 271 124 37 chr9 40783733 40784143 -101487301 - L1MEc LINE L1 -2190 3956 3511 * 380 281 48 18 chr9 40784499 40784893 -101486551 - L1MEc LINE L1 -2679 3467 3035 690 316 62 17 chr9 40784896 40785195 -101486249 - L1MEc LINE L1 -3236 2910 2626 1649 95 122 71 chr9 40785195 40785359 -101486085 - AluSx SINE Alu -2 310 156 2129 132 0 0 chr9 40785359 40785669 -101485775 - AluSx SINE Alu -2 310 1 1649 95 122 71 chr9 40785669 40785799 -101485645 - AluSx SINE Alu -156 156 1 690 316 62 17 chr9 40785799 40786271 -101485173 - L1MEc LINE L1 -3520 2626 2131 1934 159 7 0 chr9 40786722 40787023 -101484421 + AluJb SINE Alu 1 303 -9 455 251 33 53 chr9 40787173 40787374 -101484070 - MER20B DNA MER1_type -17 202 2 198 358 12 12 chr9 40788831 40788912 -101482532 + L2 LINE L2 2928 3008 -264 5231 104 67 13 chr9 40788921 40789826 -101481618 - Tigger3b DNA MER2_type -3 1228 275 566 153 41 0 chr9 40789825 40789923 -101481521 - Tigger3b DNA MER2_type -1129 102 1 * 383 312 83 87 chr9 40789926 40790179 -101481265 + L2 LINE L2 3020 3271 -1 21 0 0 0 chr9 40790469 40790490 -101480954 + AT_rich Low_complexity Low_complexity 1 21 0 820 171 0 0 chr9 40790498 40790615 -101480829 + AluJb SINE Alu 1 117 -195 2307 77 3 26 chr9 40790678 40790989 -101480455 + AluSg1 SINE Alu 1 304 -5 310 274 32 0 chr9 40791036 40791131 -101480313 - L1ME4a LINE L1 -238 5883 5786 1632 117 4 4 chr9 40791199 40791429 -101480015 - AluSq SINE Alu -83 230 1 455 299 43 20 chr9 40791450 40791704 -101479740 - L1ME4a LINE L1 -365 5756 5497 1125 135 12 6 chr9 40792001 40792164 -101479280 - AluJb SINE Alu -16 296 133 2422 88 0 0 chr9 40792552 40792859 -101478585 - AluSc SINE Alu -2 307 1 201 317 33 0 chr9 40792904 40792964 -101478480 + L2 LINE L2 3211 3272 0 2099 107 0 44 chr9 40794278 40794450 -101476994 - AluSq SINE Alu -10 303 150 2239 93 7 0 chr9 40794450 40794741 -101476703 - AluSx SINE Alu -19 293 1 2099 107 0 44 chr9 40794741 40794885 -101476559 - AluSq SINE Alu -163 150 1 1916 141 10 3 chr9 40794952 40795243 -101476201 + AluSx SINE Alu 1 293 -19 1740 151 39 0 chr9 40795800 40796079 -101475365 + AluSx SINE Alu 1 290 -22 296 185 0 0 chr9 40796605 40796659 -101474785 + Tigger5 DNA MER2_type 1 54 -2269 476 163 12 0 chr9 40796668 40796754 -101474690 + Tigger5 DNA MER2_type 2237 2323 0 1378 147 114 18 chr9 40796894 40797166 -101474278 + AluJo SINE Alu 15 312 0 2337 97 0 0 chr9 40797564 40797862 -101473582 - AluSq SINE Alu -15 298 1 22 0 0 0 chr9 40797873 40797895 -101473549 + AT_rich Low_complexity Low_complexity 1 22 0 609 55 0 0 chr9 40797898 40797971 -101473473 - AluSq SINE Alu -107 206 134 1306 71 6 6 chr9 40798070 40798239 -101473205 - AluSg/x SINE Alu -10 299 131 496 315 85 10 chr9 40798546 40798746 -101472698 + MIR SINE MIR 48 262 0 2308 80 21 0 chr9 40798808 40799097 -101472347 - AluSx SINE Alu -17 295 1 339 258 118 0 chr9 40799627 40799720 -101471724 - L2 LINE L2 -15 3298 3195 462 283 90 43 chr9 40799725 40800006 -101471438 - L1ME3A LINE L1 -230 5923 5657 1900 169 13 7 chr9 40800006 40800313 -101471131 - AluJo SINE Alu -3 309 1 462 283 90 43 chr9 40800313 40800538 -101470906 - L1ME3A LINE L1 -496 5657 5367 186 43 0 0 chr9 40800562 40800585 -101470859 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 2204 79 43 0 chr9 40800590 40800868 -101470576 - AluSp SINE Alu -23 290 1 395 298 51 21 chr9 40800922 40801254 -101470190 - L1ME3A LINE L1 -878 5251 4910 247 331 65 0 chr9 40801419 40801543 -101469901 - L1ME3A LINE L1 -1482 4647 4516 594 190 99 0 chr9 40801576 40801697 -101469747 - FLAM_A SINE Alu 0 133 1 512 297 57 83 chr9 40801732 40801850 -101469594 - L1ME3A LINE L1 -5537 582 462 1429 150 113 34 chr9 40801850 40802116 -101469328 + AluJo SINE Alu 1 287 -25 512 297 57 83 chr9 40802116 40802525 -101468919 - L1ME3A LINE L1 -5657 462 69 2430 82 3 3 chr9 40802912 40803217 -101468227 + AluSp SINE Alu 1 305 -8 406 271 63 17 chr9 40803578 40803886 -101467558 - L1MC/D LINE L1 -652 5579 5312 2193 89 0 62 chr9 40803976 40804301 -101467143 - AluSx SINE Alu -7 305 1 4810 89 34 0 chr9 40804303 40804976 -101466468 - L1PA13 LINE L1 -5 6158 5463 435 271 79 4 chr9 40804989 40805269 -101466175 - L1MC/D LINE L1 -3531 2684 2384 328 267 43 105 chr9 40805379 40805589 -101465855 - L1MC/D LINE L1 -4130 2266 2070 1311 127 56 65 chr9 40805769 40805857 -101465587 + MER33 DNA MER1_type 4 91 -2494 2284 125 0 0 chr9 40805857 40806161 -101465283 + AluSx SINE Alu 1 304 -8 1311 127 56 65 chr9 40806161 40806395 -101465049 + MER33 DNA MER1_type 91 323 -1 366 335 33 29 chr9 40806507 40806749 -101464695 - HAL1 LINE L1 -892 1615 1373 430 293 137 11 chr9 40806778 40807048 -101464396 - L1MC/D LINE L1 -4887 1318 1015 1050 155 6 6 chr9 40807049 40807217 -101464227 - AluJo SINE Alu -9 303 136 5439 151 24 8 chr9 40807236 40807595 -101463849 - L1PB1 LINE L1 -1 6150 5798 342 0 0 0 chr9 40807595 40807633 -101463811 + (TA)n Simple_repeat Simple_repeat 2 39 0 5439 151 24 8 chr9 40807633 40808576 -101462868 - L1PB1 LINE L1 -353 5798 4821 453 246 22 7 chr9 40808766 40808904 -101462540 + L1MC4a LINE L1 5790 5929 -1879 252 278 0 0 chr9 40808904 40808958 -101462486 + (TG)n Simple_repeat Simple_repeat 1 54 0 235 242 38 70 chr9 40808971 40809128 -101462316 + HAL1 LINE L1 2355 2506 -1 22 0 0 0 chr9 40809131 40809153 -101462291 + AT_rich Low_complexity Low_complexity 1 22 0 23 68 0 0 chr9 40809894 40809938 -101461506 + AT_rich Low_complexity Low_complexity 1 44 0 378 250 150 8 chr9 40809943 40810063 -101461381 - L1ME4a LINE L1 -62 6059 5923 484 282 103 43 chr9 40810870 40811289 -101460155 + L1MC4a LINE L1 5462 5905 -1903 2226 102 0 10 chr9 40811744 40812039 -101459405 + AluSg SINE Alu 1 292 -18 748 195 0 0 chr9 40812289 40812417 -101459027 - AluJo SINE Alu -172 130 3 1951 132 25 0 chr9 40812428 40812709 -101458735 - AluSx SINE Alu -18 294 7 395 294 57 76 chr9 40812803 40813275 -101458169 - L1M4 LINE L1 -1197 4949 4487 288 0 0 0 chr9 40813346 40813378 -101458066 + (CA)n Simple_repeat Simple_repeat 2 33 0 2304 99 0 3 chr9 40813438 40813731 -101457713 - AluSq SINE Alu -21 292 1 1227 286 136 25 chr9 40813750 40813945 -101457499 - L1ME LINE L1 -1589 4491 4319 1750 196 14 0 chr9 40813945 40814230 -101457214 + AluJb SINE Alu 2 290 -22 1227 286 136 25 chr9 40814230 40814363 -101457081 - L1ME LINE L1 -1761 4319 4202 2250 116 0 0 chr9 40814363 40814673 -101456771 - AluSq SINE Alu -1 312 3 1227 286 136 25 chr9 40814673 40815450 -101455994 - L1ME LINE L1 -1878 4202 3263 825 158 8 0 chr9 40815458 40815585 -101455859 + FLAM_C SINE Alu 1 128 -5 2037 86 7 45 chr9 40815590 40815910 -101455534 + AluSg SINE Alu 1 309 0 423 0 0 0 chr9 40815910 40815957 -101455487 + (TA)n Simple_repeat Simple_repeat 1 47 0 741 228 57 29 chr9 40816001 40816282 -101455162 - L1ME LINE L1 -3020 3060 2772 433 249 86 16 chr9 40816363 40816620 -101454824 - L1ME LINE L1 -3795 2285 2038 1422 216 18 0 chr9 40816642 40816925 -101454519 + AluJo SINE Alu 1 288 -24 34 24 0 0 chr9 40817112 40817153 -101454291 + AT_rich Low_complexity Low_complexity 1 41 0 1288 172 0 5 chr9 40817187 40817402 -101454042 + AluJb SINE Alu 85 298 -14 386 275 79 82 chr9 40817409 40817739 -101453705 - L1ME LINE L1 -4500 1580 1209 1596 149 28 0 chr9 40817885 40818133 -101453311 - AluJb SINE Alu -57 255 1 376 249 102 34 chr9 40818153 40818536 -101452908 - L1ME LINE L1 -4867 1203 784 22 0 0 0 chr9 40818676 40818698 -101452746 + AT_rich Low_complexity Low_complexity 1 22 0 1658 202 0 7 chr9 40818698 40818990 -101452454 - AluJo SINE Alu -22 290 1 2323 101 0 13 chr9 40819276 40819593 -101451851 + AluSp SINE Alu 1 313 0 2405 81 0 3 chr9 40819871 40820169 -101451275 - AluSq SINE Alu -16 297 1 2160 92 7 7 chr9 40820188 40820481 -101450963 - AluSq SINE Alu -15 298 6 460 236 78 63 chr9 40820540 40820887 -101450557 - L1MEc LINE L1 -2911 3218 2867 1451 176 107 0 chr9 40820929 40821201 -101450243 - AluJo SINE Alu -11 301 1 445 101 78 3 chr9 40821251 40821586 -101449858 + (TA)n Simple_repeat Simple_repeat 1 360 0 1519 140 96 44 chr9 40821610 40821881 -101449563 - AluJb SINE Alu -22 290 6 2306 122 3 0 chr9 40822076 40822388 -101449056 + AluSq SINE Alu 1 313 0 30 59 0 0 chr9 40822402 40822453 -101448991 + AT_rich Low_complexity Low_complexity 1 51 0 770 169 16 0 chr9 40822714 40822838 -101448606 - FLAM_C SINE Alu -17 126 1 21 57 0 0 chr9 40823013 40823048 -101448396 + AT_rich Low_complexity Low_complexity 1 35 0 1930 142 16 13 chr9 40823924 40824235 -101447209 - AluJb SINE Alu 0 312 1 497 269 96 10 chr9 40824237 40824434 -101447010 - L1MEc LINE L1 -4100 2210 1997 2264 112 0 7 chr9 40824535 40824838 -101446606 - AluSx SINE Alu -11 301 1 425 264 160 48 chr9 40824944 40825238 -101446206 - L1MEc LINE L1 -4471 1658 1294 2331 105 3 0 chr9 40825238 40825543 -101445901 - AluSp SINE Alu -7 306 1 425 264 160 48 chr9 40825543 40825703 -101445741 - L1MEc LINE L1 -4835 1294 1153 288 309 0 7 chr9 40825822 40825961 -101445483 - L1MEc LINE L1 -5011 1108 971 291 260 55 16 chr9 40825989 40826116 -101445328 - MARNA DNA Mariner -53 533 402 242 314 49 0 chr9 40826026 40826128 -101445316 + MARNA DNA Mariner 91 197 -389 * 313 269 106 77 chr9 40826393 40826640 -101444804 + L1ME LINE L1 5420 5681 -440 234 304 89 68 chr9 40827670 40827861 -101443583 + L2 LINE L2 3119 3313 0 249 186 0 0 chr9 40828288 40828331 -101443113 - L2 LINE L2 -3 3310 3268 356 289 121 77 chr9 40828560 40829104 -101442340 - L1M2 LINE L1 -5523 1326 759 324 275 231 60 chr9 40829116 40829501 -101441943 + L1M2 LINE L1 653 1103 -5746 2257 64 24 7 chr9 40829609 40829904 -101441540 - AluSg1 SINE Alu -9 300 1 2280 149 59 74 chr9 40830083 40830594 -101440850 + MLT2B2 LTR ERVL 2 504 -11 408 177 0 0 chr9 40831230 40831292 -101440152 + AluJo SINE Alu 1 62 -250 605 158 42 0 chr9 40831292 40831387 -101440057 - AluJb SINE Alu -16 296 198 1297 174 0 64 chr9 40831388 40831652 -101439792 + AluJo SINE Alu 52 298 -14 2631 7 0 0 chr9 40831655 40831940 -101439504 + AluYb8 SINE Alu 34 318 0 678 210 157 26 chr9 40832233 40832462 -101438982 - MIR SINE MIR 0 262 4 234 235 0 0 chr9 40832767 40832818 -101438626 - Charlie8 DNA MER1_type -2225 192 142 2105 127 8 29 chr9 40833130 40833508 -101437936 + L1MB3 LINE L1 5814 6183 0 559 234 148 60 chr9 40833509 40834055 -101437389 + HAL1 LINE L1 1832 2425 -82 229 193 36 48 chr9 40834051 40834134 -101437310 - L1MB3 LINE L1 -125 6058 5977 * 236 250 73 32 chr9 40834962 40835086 -101436358 - L1MC4 LINE L1 0 8042 7914 2113 196 73 6 chr9 40835107 40835349 -101436095 - L1MB3 LINE L1 -2 6181 5940 3693 207 58 115 chr9 40835349 40835737 -101435707 - L1ME2 LINE L1 -233 5931 5522 684 178 42 0 chr9 40835737 40835855 -101435589 - FLAM_C SINE Alu -6 127 5 3693 207 58 115 chr9 40835855 40836976 -101434468 - L1ME2 LINE L1 -642 5522 4338 418 223 21 0 chr9 40836976 40837070 -101434374 - AluJo SINE Alu -177 135 40 3693 207 58 115 chr9 40837070 40837192 -101434252 - L1ME2 LINE L1 -1826 4338 4211 786 156 7 22 chr9 40837192 40837327 -101434117 + FLAM_C SINE Alu 1 133 0 3693 207 58 115 chr9 40837327 40837511 -101433933 - L1ME2 LINE L1 -1953 4211 4018 192 111 0 0 chr9 40837511 40837547 -101433897 + (TG)n Simple_repeat Simple_repeat 1 36 0 3693 207 58 115 chr9 40837547 40838258 -101433186 - L1ME2 LINE L1 -2146 4018 3518 2331 114 46 8 chr9 40838303 40838654 -101432790 + THE1B LTR MaLR 1 364 0 957 229 79 46 chr9 40838670 40839361 -101432083 + LTR41 LTR ERVL 1 767 -6 424 307 61 19 chr9 40839883 40840162 -101431282 + LTR40c LTR ERVL 148 480 -39 2334 101 0 0 chr9 40840540 40840837 -101430607 + AluSx SINE Alu 1 297 -15 181 344 84 69 chr9 40841078 40841340 -101430104 + L2 LINE L2 3007 3272 0 2199 115 0 0 chr9 40841984 40842271 -101429173 + AluSx SINE Alu 1 287 -25 192 97 0 0 chr9 40842274 40842305 -101429139 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 2230 106 0 0 chr9 40843373 40843665 -101427779 + AluSx SINE Alu 1 292 -20 2337 88 7 0 chr9 40844321 40844617 -101426827 - AluSx SINE Alu -14 298 1 232 320 40 0 chr9 40845441 40845541 -101425903 + L3 LINE CR1 1069 1172 -405 382 283 68 11 chr9 40845585 40845762 -101425682 + L3 LINE CR1 1301 1487 -90 27 49 0 0 chr9 40846294 40846335 -101425109 + AT_rich Low_complexity Low_complexity 1 41 0 247 340 52 26 chr9 40846958 40847111 -101424333 + L2 LINE L2 2902 3058 -214 764 179 136 11 chr9 40847468 40847652 -101423792 + MER3 DNA MER1_type 2 208 -1 259 286 71 0 chr9 40849662 40849760 -101421684 - L1ME4a LINE L1 -4 6117 6013 2363 124 104 2 chr9 40850365 40850768 -101420676 - L1PB3 LINE L1 -2 6152 5709 2060 106 50 3 chr9 40851516 40851799 -101419645 - AluSg SINE Alu -10 300 5 2186 103 7 0 chr9 40852009 40852299 -101419145 - AluSx SINE Alu -6 306 15 209 335 153 31 chr9 40852517 40852804 -101418640 - L2 LINE L2 -5 3267 2946 2493 86 0 0 chr9 40852813 40853126 -101418318 - AluSp SINE Alu 0 313 1 2069 124 10 13 chr9 40853126 40853424 -101418020 - AluSx SINE Alu -14 298 1 24 53 0 0 chr9 40853759 40853797 -101417647 + AT_rich Low_complexity Low_complexity 1 38 0 1574 156 45 24 chr9 40854213 40854501 -101416943 + AluJo SINE Alu 1 294 -18 839 314 64 36 chr9 40854749 40855281 -101416163 - L3 LINE CR1 -23 1554 1008 255 242 22 33 chr9 40855337 40855428 -101416016 - MARNA DNA Mariner -478 108 19 1393 167 93 0 chr9 40855736 40855993 -101415451 + AluJb SINE Alu 1 281 -31 681 158 0 39 chr9 40856057 40856184 -101415260 - FRAM SINE Alu -5 171 50 2132 118 0 0 chr9 40856204 40856484 -101414960 - AluSc SINE Alu -29 280 1 587 283 79 22 chr9 40856489 40856617 -101414827 - L1MC4 LINE L1 0 8042 7923 1657 178 3 43 chr9 40856617 40856920 -101414524 + AluJo SINE Alu 1 291 -21 587 283 79 22 chr9 40856920 40857198 -101414246 - L1MC4 LINE L1 -119 7923 7613 825 139 0 8 chr9 40857212 40857334 -101414110 - FLAM_C SINE Alu -20 123 3 389 173 49 0 chr9 40857375 40857456 -101413988 - L1MC4 LINE L1 -487 7555 7471 637 162 76 0 chr9 40857470 40857575 -101413869 + FLAM_C SINE Alu 14 126 -17 1409 140 123 74 chr9 40857586 40857724 -101413720 + AluJo SINE Alu 1 131 -181 1886 155 0 7 chr9 40857724 40858015 -101413429 + AluJo SINE Alu 1 289 -23 1409 140 123 74 chr9 40858015 40858161 -101413283 + AluJo SINE Alu 131 299 -13 559 219 215 15 chr9 40858186 40858446 -101412998 - L1MC4a LINE L1 -467 7341 7030 25 31 0 0 chr9 40858490 40858522 -101412922 + AT_rich Low_complexity Low_complexity 1 32 0 365 318 75 3 chr9 40859414 40859735 -101411709 + L1M4 LINE L1 3099 3442 -2704 1657 137 78 25 chr9 40860135 40860419 -101411025 + AluJb SINE Alu 1 299 -13 2107 151 0 0 chr9 40860700 40861012 -101410432 - AluJb SINE Alu 0 312 1 2084 142 10 0 chr9 40862502 40862804 -101408640 - AluJo SINE Alu -7 305 1 2807 190 19 21 chr9 40862961 40863109 -101408335 + LTR53 LTR ERVL 1 148 -371 9001 28 28 2 chr9 40863109 40864933 -101406511 + L1PA4 LINE L1 4299 6149 -6 2807 190 19 21 chr9 40864933 40865304 -101406140 + LTR53 LTR ERVL 148 519 0 1990 130 0 59 chr9 40865314 40865465 -101405979 + AluSq SINE Alu 1 125 -188 1825 117 0 4 chr9 40865465 40865722 -101405722 + AluY SINE Alu 50 305 -6 1990 130 0 59 chr9 40865722 40865892 -101405552 + AluSq SINE Alu 125 303 -10 616 246 106 47 chr9 40866552 40866788 -101404656 + MIR SINE MIR 10 259 -3 2070 105 6 43 chr9 40866864 40867187 -101404257 - AluY SINE Alu 0 311 1 21 0 0 0 chr9 40867308 40867329 -101404115 + AT_rich Low_complexity Low_complexity 1 21 0 257 290 54 32 chr9 40867619 40867712 -101403732 - MIR SINE MIR -77 131 37 2101 127 10 0 chr9 40868329 40868621 -101402823 - AluSq SINE Alu -18 295 1 243 245 0 0 chr9 40868819 40868872 -101402572 - L2 LINE L2 -5 3308 3256 368 242 185 38 chr9 40869274 40869485 -101401959 - HAL1 LINE L1 -17 2490 2249 1048 179 40 0 chr9 40869515 40869688 -101401756 - AluJb SINE Alu -25 287 108 2107 106 14 0 chr9 40869712 40869994 -101401450 - AluSx SINE Alu -26 286 1 233 97 0 0 chr9 40870179 40870210 -101401234 - MER3 DNA MER1_type -160 49 19 2097 144 3 0 chr9 40870210 40870502 -101400942 - AluSx SINE Alu -19 293 1 2030 190 72 44 chr9 40870507 40871034 -101400410 - L1ME2 LINE L1 -131 6033 5492 529 327 86 4 chr9 40871116 40871394 -101400050 - L1MEc LINE L1 -6092 304 4 1958 156 0 0 chr9 40871620 40871903 -101399541 - AluJb SINE Alu -24 288 6 237 200 31 31 chr9 40871921 40871986 -101399458 - HAL1 LINE L1 -366 2141 2077 201 299 120 0 chr9 40872155 40872272 -101399172 + MIR SINE MIR 59 189 -73 1673 183 31 0 chr9 40872662 40872952 -101398492 + AluJo SINE Alu 1 299 -13 531 155 48 10 chr9 40873035 40873138 -101398306 - FLAM_C SINE Alu -26 117 11 244 196 0 0 chr9 40873147 40873198 -101398246 + L1MC4 LINE L1 6653 6703 -1339 318 223 0 43 chr9 40873216 40873310 -101398134 - L1MC4 LINE L1 -1339 6703 6614 1879 123 3 47 chr9 40873313 40873613 -101397831 - AluSx SINE Alu -25 287 1 184 245 19 19 chr9 40873898 40873951 -101397493 - L2 LINE L2 0 3272 3220 277 330 48 0 chr9 40874402 40874505 -101396939 + L2 LINE L2 3203 3310 -3 581 217 26 84 chr9 40874615 40874768 -101396676 - L1MB3 LINE L1 -28 6155 6018 2208 89 4 7 chr9 40874768 40875049 -101396395 - AluY SINE Alu -31 280 1 581 217 26 84 chr9 40875049 40875121 -101396323 - L1MB3 LINE L1 -165 6018 5943 425 190 0 13 chr9 40875125 40875204 -101396240 + MSTC LTR MaLR 1 78 -350 429 235 274 11 chr9 40875504 40875743 -101395701 + L2 LINE L2 2715 3011 -302 783 140 199 72 chr9 40876527 40876748 -101394696 + MER4D LTR ERV1 1 249 -623 5568 118 191 39 chr9 40876759 40877837 -101393607 - pTR5 LTR ERV1 0 2438 1197 1022 202 157 45 chr9 40878001 40878377 -101393067 - Charlie1 DNA MER1_type -1 2760 2343 328 275 14 0 chr9 40878376 40878445 -101392999 - Charlie1 DNA MER1_type -2691 70 1 * 428 286 19 0 chr9 40930420 40930574 -101340870 + L1ME4a LINE L1 5749 5905 -216 205 219 0 0 chr9 40931372 40931413 -101340031 - MIR3 SINE MIR -6 202 162 217 132 0 0 chr9 40931629 40931667 -101339777 + (A)n Simple_repeat Simple_repeat 1 38 0 1258 129 0 0 chr9 40931683 40931846 -101339598 + AluSq SINE Alu 1 163 -150 5808 109 20 34 chr9 40931846 40932808 -101338636 - Tigger1 DNA MER2_type -80 2338 1391 8712 124 25 9 chr9 40932908 40934282 -101337162 - Tigger1 DNA MER2_type -1022 1396 2 2224 103 3 0 chr9 40934331 40934621 -101336823 + AluSq SINE Alu 1 291 -22 2114 123 0 35 chr9 40934631 40934941 -101336503 + AluSc SINE Alu 1 299 -10 602 277 150 5 chr9 40936261 40936481 -101334963 + MIR SINE MIR 2 253 -9 299 232 277 18 chr9 40936769 40936881 -101334563 - MIR3 SINE MIR -46 162 22 221 154 58 0 chr9 40937216 40937268 -101334176 + (CAGGG)n Simple_repeat Simple_repeat 4 58 0 197 371 48 24 chr9 40938018 40938142 -101333302 - L2 LINE L2 -5 3308 3182 248 281 94 31 chr9 40938190 40938318 -101333126 - MIR SINE MIR -19 243 108 227 316 71 0 chr9 40939572 40939670 -101331774 - MIR SINE MIR -3 259 155 232 121 0 0 chr9 40939724 40939757 -101331687 - MIR SINE MIR -213 49 17 235 245 135 80 chr9 40939844 40940007 -101331437 + MIR3 SINE MIR 16 187 -21 317 280 53 15 chr9 40940578 40940710 -101330734 + MIR3 SINE MIR 48 184 -24 1315 196 111 101 chr9 40940967 40941482 -101329962 + MLT2B1 LTR ERVL 1 520 0 402 304 132 71 chr9 40942898 40943304 -101328140 + L1MC4a LINE L1 5521 5800 -364 214 248 153 51 chr9 40943530 40943673 -101327771 - MIR3 SINE MIR -71 137 1 2424 80 0 0 chr9 40944451 40944764 -101326680 + AluSq SINE Alu 1 313 0 255 31 0 0 chr9 40945200 40945232 -101326212 + (CA)n Simple_repeat Simple_repeat 1 32 0 1179 61 0 0 chr9 40945757 40945904 -101325540 + L1PA5 LINE L1 6008 6154 0 251 308 58 8 chr9 40946498 40946618 -101324826 + MIR SINE MIR 20 145 -63 354 355 7 40 chr9 40946802 40946954 -101324490 + MIR SINE MIR 30 176 -86 189 331 176 0 chr9 40949658 40949794 -101321650 + L2 LINE L2 2898 3057 -215 1905 151 0 0 chr9 40950786 40951085 -101320359 - AluJb SINE Alu -13 299 1 181 337 0 11 chr9 40951228 40951317 -101320127 - L2 LINE L2 -27 3245 3158 206 242 0 65 chr9 40951486 40951548 -101319896 - L2 LINE L2 -546 2768 2711 227 288 209 20 chr9 40952096 40952249 -101319195 - MIR3 SINE MIR -20 188 7 346 271 8 59 chr9 40953217 40953335 -101318109 + MIR SINE MIR 81 192 -70 374 254 61 8 chr9 40954375 40954515 -101316929 + MIR SINE MIR 42 192 -62 184 188 0 0 chr9 40957906 40957938 -101313506 + MIR SINE MIR 119 150 -112 350 242 81 32 chr9 40959373 40959497 -101311947 + L2 LINE L2 3184 3313 0 192 205 0 0 chr9 40959693 40959732 -101311712 - L2 LINE L2 -91 3181 3143 702 253 143 22 chr9 40959972 40960245 -101311199 - L2 LINE L2 0 3313 3008 191 187 227 13 chr9 40960916 40960991 -101310453 + MIR SINE MIR 34 124 -84 446 249 68 0 chr9 40961763 40961900 -101309544 - MIR SINE MIR -63 145 35 556 240 71 19 chr9 40962482 40962636 -101308808 + MIR SINE MIR 100 261 -1 210 352 0 11 chr9 40963585 40963673 -101307771 - MIR3 SINE MIR -9 199 113 395 390 42 5 chr9 40963905 40964095 -101307349 - L3 LINE CR1 -1 1576 1380 252 283 0 0 chr9 40964114 40964167 -101307277 + MIR3 SINE MIR 108 160 -48 376 271 68 5 chr9 40964645 40964763 -101306681 + MIR SINE MIR 63 183 -63 185 273 114 34 chr9 40964844 40964932 -101306512 - MIR SINE MIR -60 148 54 1597 173 32 7 chr9 40965666 40965943 -101305501 + AluJb SINE Alu 6 289 -23 467 242 0 30 chr9 40966442 40966574 -101304870 + MIR3 SINE MIR 66 193 -15 468 315 75 58 chr9 40971933 40972414 -101299030 + L1MC4a LINE L1 5506 5996 -125 203 306 14 14 chr9 40972594 40972666 -101298778 - MER5A DNA MER1_type -1 188 117 * 253 210 48 0 chr9 40972662 40972724 -101298720 + MER5A DNA MER1_type 122 186 -3 621 124 0 0 chr9 40972999 40973096 -101298348 + L1PB1 LINE L1 6053 6149 -2 2270 97 0 7 chr9 40973390 40973700 -101297744 + AluSp SINE Alu 3 310 -3 2109 103 0 38 chr9 40973706 40974025 -101297419 + AluSx SINE Alu 1 307 -5 893 188 11 6 chr9 40974184 40974360 -101297084 + MSTB1 LTR MaLR 256 432 0 643 103 21 0 chr9 40974360 40974455 -101296989 + MLT1B LTR MaLR 294 390 0 188 277 62 0 chr9 40975531 40975596 -101295848 + L3 LINE CR1 1400 1468 -109 351 233 106 101 chr9 40976819 40977008 -101294436 - L3 LINE CR1 -76 1501 1312 244 317 250 0 chr9 40978297 40978417 -101293027 + MIR SINE MIR 96 245 -17 263 310 9 26 chr9 40979546 40979659 -101291785 - L2 LINE L2 -28 3244 3134 202 325 187 30 chr9 40979667 40979870 -101291574 + L2 LINE L2 3027 3261 -11 691 275 80 23 chr9 40980162 40980424 -101291020 - LTR16C LTR ERVL -2 489 213 376 301 55 33 chr9 40981352 40981535 -101289909 + L1ME4a LINE L1 5799 5985 -136 523 192 3 87 chr9 40982030 40982172 -101289272 + MIR SINE MIR 52 181 -63 1879 121 7 0 chr9 40982173 40982454 -101288990 - AluSx SINE Alu -4 308 26 791 217 96 24 chr9 40983353 40983519 -101287925 + MER45A DNA AcHobo 1 178 0 231 305 99 0 chr9 40983560 40983671 -101287773 + MIR SINE MIR 35 156 -52 2126 98 0 22 chr9 40983808 40984124 -101287320 + AluSc SINE Alu 1 309 0 285 292 173 22 chr9 40984953 40985138 -101286306 - MIR SINE MIR -29 233 21 570 147 202 0 chr9 40986195 40986304 -101285140 + AluJo SINE Alu 6 136 -176 470 316 64 5 chr9 40987204 40987391 -101284053 - L3 LINE CR1 -104 1473 1276 2217 109 0 0 chr9 40987454 40987766 -101283678 - AluSx SINE Alu 0 312 1 735 321 68 23 chr9 40987793 40988145 -101283299 + L3 LINE CR1 1140 1507 -70 295 232 0 14 chr9 40988457 40988526 -101282918 - MER58A DNA MER1_type -1 223 156 699 222 17 33 chr9 40988541 40988721 -101282723 - MER5B DNA MER1_type 0 178 2 284 244 51 26 chr9 40988782 40988860 -101282584 - MIR SINE MIR -87 121 42 541 292 35 12 chr9 40989560 40989731 -101281713 - MIR SINE MIR -66 196 22 498 211 156 0 chr9 40990260 40990388 -101281056 + MIR SINE MIR 19 166 -96 249 355 89 47 chr9 40991158 40991327 -101280117 + L2 LINE L2 3097 3272 0 * 353 209 62 54 chr9 40991325 40991454 -101279990 - MIR3 SINE MIR -66 142 13 225 236 34 56 chr9 40992967 40993056 -101278388 + MIR SINE MIR 16 102 -106 206 222 0 0 chr9 40993324 40993360 -101278084 + (CAGG)n Simple_repeat Simple_repeat 4 39 0 206 242 16 0 chr9 40994448 40994510 -101276934 - L2 LINE L2 -557 2757 2695 340 328 211 0 chr9 40994853 40995057 -101276387 + MIR SINE MIR 9 255 -7 199 303 131 30 chr9 40995728 40995926 -101275518 + L2 LINE L2 2844 3061 -211 2448 90 3 0 chr9 40996377 40996687 -101274757 + AluSp SINE Alu 1 311 -2 300 178 0 82 chr9 40997145 40997218 -101274226 - L2 LINE L2 0 3272 3206 2103 112 10 43 chr9 40998088 40998393 -101273051 + AluSx SINE Alu 1 295 -17 1851 94 0 4 chr9 40998715 40998950 -101272494 + AluSx SINE Alu 3 236 -76 589 227 130 0 chr9 40999009 40999163 -101272281 + MER58B DNA MER1_type 168 341 0 454 248 40 8 chr9 40999284 40999409 -101272035 - MARNA DNA Mariner -196 390 262 238 233 17 0 chr9 40999732 40999792 -101271652 - MIR SINE MIR -67 141 81 351 303 120 7 chr9 40999950 41000092 -101271352 + MIR SINE MIR 87 244 -18 344 189 0 0 chr9 41000977 41001051 -101270393 - L1ME4a LINE L1 -92 6029 5956 1500 198 32 0 chr9 41001130 41001413 -101270031 + AluJo SINE Alu 1 292 -20 1731 152 52 7 chr9 41001793 41002063 -101269381 - AluJb SINE Alu -15 297 16 2175 112 10 26 chr9 41002100 41002413 -101269031 + AluSx SINE Alu 5 312 0 247 143 41 0 chr9 41002416 41002465 -101268979 - MIR SINE MIR -73 135 85 2286 100 31 0 chr9 41002569 41002860 -101268584 - AluSq SINE Alu -13 300 1 2320 86 3 10 chr9 41003930 41004234 -101267210 + AluSc SINE Alu 1 302 -7 196 322 9 52 chr9 41005612 41005727 -101265717 + L2 LINE L2 2950 3059 -213 490 223 26 104 chr9 41005905 41006014 -101265430 + MIR SINE MIR 42 131 -131 2299 103 0 0 chr9 41006014 41006306 -101265138 - AluY SINE Alu -19 292 1 490 223 26 104 chr9 41006306 41006389 -101265055 + MIR SINE MIR 131 219 -43 313 276 0 0 chr9 41006560 41006658 -101264786 - MIR SINE MIR 0 262 165 217 354 0 63 chr9 41006810 41006937 -101264507 - MIR SINE MIR -73 135 25 259 336 28 28 chr9 41007442 41007549 -101263895 + L3 LINE CR1 1256 1362 -215 592 253 49 19 chr9 41007742 41007904 -101263540 - MER5B DNA MER1_type -1 177 11 450 303 133 57 chr9 41008974 41009108 -101262336 + L1ME LINE L1 4931 5053 -1093 1952 145 3 3 chr9 41009108 41009397 -101262047 - AluSx SINE Alu -19 293 5 450 303 133 57 chr9 41009397 41009684 -101261760 + L1ME LINE L1 5053 5384 -762 372 283 107 11 chr9 41009764 41009951 -101261493 + L1ME LINE L1 5544 5748 -373 551 292 70 46 chr9 41009952 41010233 -101261211 + HAL1b LINE L1 1188 1330 -18 206 267 44 67 chr9 41010598 41010688 -101260756 + L3 LINE CR1 1364 1451 -126 688 272 166 33 chr9 41011115 41011878 -101259566 + L2 LINE L2 2405 3291 -22 207 0 0 0 chr9 41011886 41011909 -101259535 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 255 287 86 12 chr9 41012560 41012697 -101258747 + MIR SINE MIR 52 195 -57 617 188 65 178 chr9 41012861 41012938 -101258506 + MIR SINE MIR 3 87 -175 1953 115 15 0 chr9 41012938 41013219 -101258225 - AluSx SINE Alu 0 306 22 240 67 0 0 chr9 41013219 41013249 -101258195 - AluSx SINE Alu -94 39 10 617 188 65 178 chr9 41013249 41013433 -101258011 + MIR SINE MIR 85 262 0 257 366 15 23 chr9 41013635 41013766 -101257678 + L2 LINE L2 3138 3267 -5 1886 139 73 3 chr9 41013821 41014109 -101257335 + AluJb SINE Alu 3 310 -2 506 257 29 7 chr9 41014956 41015092 -101256352 + MIR SINE MIR 11 149 -113 1374 215 119 50 chr9 41015092 41015496 -101255948 + MLT1H LTR MaLR 4 435 -114 830 200 69 0 chr9 41015538 41015698 -101255746 + MER58A DNA MER1_type 1 171 -53 228 118 0 0 chr9 41015712 41015746 -101255698 + MLT1H LTR MaLR 508 541 -8 462 273 60 60 chr9 41016151 41016451 -101254993 + L2 LINE L2 2862 3161 -111 22 0 0 0 chr9 41016565 41016587 -101254857 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr9 41016748 41016769 -101254675 + AT_rich Low_complexity Low_complexity 1 21 0 227 333 0 0 chr9 41017212 41017284 -101254160 + (CA)n Simple_repeat Simple_repeat 2 73 0 1416 153 113 4 chr9 41017621 41017869 -101253575 + AluJo SINE Alu 1 275 -37 485 229 97 23 chr9 41018173 41018348 -101253096 + MER5A DNA MER1_type 2 189 0 204 97 0 0 chr9 41020169 41020200 -101251244 + (CAGGG)n Simple_repeat Simple_repeat 3 33 0 320 253 11 32 chr9 41020239 41020334 -101251110 + MIR3 SINE MIR 62 154 -54 28 71 0 0 chr9 41020791 41020847 -101250597 + GC_rich Low_complexity Low_complexity 1 56 0 34 73 0 28 chr9 41021431 41021540 -101249904 + GC_rich Low_complexity Low_complexity 1 106 0 27 62 0 0 chr9 41021936 41021984 -101249460 + GC_rich Low_complexity Low_complexity 1 48 0 282 190 29 58 chr9 41022045 41022182 -101249262 + (CCCCG)n Simple_repeat Simple_repeat 2 134 0 2399 68 0 10 chr9 41022837 41023129 -101248315 + AluSg1 SINE Alu 1 289 -20 271 57 0 0 chr9 41023136 41023171 -101248273 - MIR SINE MIR -62 146 112 195 303 67 22 chr9 41023777 41023866 -101247578 - MIR3 SINE MIR -106 102 10 288 0 0 0 chr9 41024090 41024122 -101247322 + (TG)n Simple_repeat Simple_repeat 1 32 0 * 342 0 0 0 chr9 41024121 41024159 -101247285 + (GA)n Simple_repeat Simple_repeat 1 38 0 293 241 193 35 chr9 41025063 41025208 -101246236 - MIR3 SINE MIR -2 206 39 2145 105 33 13 chr9 41025500 41025805 -101245639 - AluY SINE Alu 0 311 1 2316 89 7 0 chr9 41025805 41026097 -101245347 - AluSp SINE Alu -19 294 1 255 333 50 64 chr9 41026325 41026780 -101244664 - L2 LINE L2 -227 3045 2594 207 259 37 0 chr9 41026783 41026837 -101244607 + L2 LINE L2 3217 3272 0 277 337 0 0 chr9 41026991 41027086 -101244358 - L2 LINE L2 -1017 2297 2203 * 1172 259 117 21 chr9 41027085 41027804 -101243640 + L2 LINE L2 2444 3313 0 551 202 8 8 chr9 41027926 41028055 -101243389 - L1MA9 LINE L1 -36 6276 6148 9078 114 61 56 chr9 41028055 41029879 -101241565 + pTR5 LTR ERV1 71 2429 -9 3928 168 25 64 chr9 41029879 41030243 -101241201 - L1MA9 LINE L1 -161 6151 5774 1875 153 0 38 chr9 41030243 41030556 -101240888 - AluJb SINE Alu -10 302 2 784 104 0 0 chr9 41030559 41030674 -101240770 - L1MA3 LINE L1 0 6305 6191 3928 168 25 64 chr9 41030674 41031136 -101240308 - L1MA9 LINE L1 -540 5772 5294 2129 131 6 13 chr9 41031136 41031449 -101239995 - AluSx SINE Alu -1 311 1 3928 168 25 64 chr9 41031449 41031492 -101239952 - L1MA9 LINE L1 -1018 5294 5251 2346 79 10 3 chr9 41031492 41031784 -101239660 + AluSg1 SINE Alu 1 294 -15 3928 168 25 64 chr9 41031784 41032350 -101239094 - L1MA9 LINE L1 -1061 5251 4738 1659 163 30 40 chr9 41033255 41033390 -101238054 + AluJb SINE Alu 1 136 -176 1914 128 20 20 chr9 41033390 41033687 -101237757 + AluSx SINE Alu 15 311 -1 1659 163 30 40 chr9 41033687 41033851 -101237593 + AluJb SINE Alu 136 297 -15 256 247 49 12 chr9 41033869 41033950 -101237494 + MER53 DNA DNA 105 188 -1 288 257 119 0 chr9 41035008 41035117 -101236327 + AluSp SINE Alu 12 133 -170 1943 202 23 2 chr9 41035243 41035678 -101235766 + L1MB7 LINE L1 4419 4862 -1284 1340 121 109 59 chr9 41035684 41035830 -101235614 - L1MA8 LINE L1 -1 6290 6153 2198 123 0 22 chr9 41035830 41036148 -101235296 - AluSx SINE Alu -1 311 1 1340 121 109 59 chr9 41036148 41036339 -101235105 - L1MA8 LINE L1 -138 6153 5936 24 32 0 0 chr9 41036340 41036371 -101235073 + AT_rich Low_complexity Low_complexity 1 31 0 641 174 0 0 chr9 41036371 41036480 -101234964 - FLAM_C SINE Alu -27 116 8 1441 112 9 0 chr9 41036487 41036711 -101234733 - L1MA8 LINE L1 -343 5948 5723 * 3995 162 111 6 chr9 41036707 41036945 -101234499 + L1MB7 LINE L1 4954 5166 -1018 1739 162 10 14 chr9 41036945 41037235 -101234209 + AluJo SINE Alu 1 289 -23 3995 162 111 6 chr9 41037235 41038069 -101233375 + L1MB7 LINE L1 5166 6165 -19 482 253 39 101 chr9 41038263 41038520 -101232924 - L3 LINE CR1 -76 1501 1261 2260 125 7 0 chr9 41038801 41039104 -101232340 - AluSq SINE Alu -8 305 1 1836 145 22 0 chr9 41039452 41039753 -101231691 - AluJb SINE Alu 0 307 1 284 288 79 29 chr9 41039759 41039911 -101231533 + MIR SINE MIR 52 207 -55 208 313 152 18 chr9 41040216 41040328 -101231116 - L2 LINE L2 -1 3312 3186 2126 113 28 3 chr9 41040377 41040668 -101230776 + AluSx SINE Alu 1 298 -14 1048 231 15 23 chr9 41040830 41041090 -101230354 - MIR SINE MIR 0 262 5 2361 118 3 0 chr9 41041343 41041649 -101229795 + AluSx SINE Alu 1 307 -5 451 287 2 7 chr9 41042249 41042413 -101229031 + MIR SINE MIR 28 146 -62 229 265 15 15 chr9 41042659 41042727 -101228717 + MIR SINE MIR 24 91 -117 379 351 105 19 chr9 41043101 41043471 -101227973 - L2 LINE L2 -18 3254 2853 925 184 0 0 chr9 41043584 41043725 -101227719 - FRAM SINE Alu -22 154 14 246 250 143 7 chr9 41044166 41044306 -101227138 - L1ME4a LINE L1 -3 6118 5960 916 287 58 17 chr9 41044307 41044655 -101226789 - L1ME4a LINE L1 -193 5928 5567 374 272 59 41 chr9 41045212 41045322 -101226122 + L1ME LINE L1 5511 5627 -494 1585 178 16 13 chr9 41045322 41045626 -101225818 - AluJo SINE Alu -7 305 1 374 272 59 41 chr9 41045626 41045684 -101225760 + L1ME LINE L1 5627 5682 -439 312 167 0 19 chr9 41045685 41045739 -101225705 + MER66A LTR ERV1 286 338 -140 2057 132 6 3 chr9 41045937 41046248 -101225196 + AluSx SINE Alu 1 312 0 409 309 210 29 chr9 41046764 41047181 -101224263 - L2 LINE L2 0 3313 2778 1773 123 14 20 chr9 41047181 41047499 -101223945 + AluJo SINE Alu 1 312 0 409 309 210 29 chr9 41047499 41047572 -101223872 - L2 LINE L2 -535 2778 2719 396 40 0 0 chr9 41047580 41047630 -101223814 + (TG)n Simple_repeat Simple_repeat 1 50 0 25 0 0 0 chr9 41047677 41047702 -101223742 + AT_rich Low_complexity Low_complexity 1 25 0 341 265 37 49 chr9 41047714 41047744 -101223700 - L1PA16 LINE L1 -312 5854 5526 2075 120 0 3 chr9 41047744 41048043 -101223401 - AluSx SINE Alu -14 298 1 769 165 18 12 chr9 41048043 41048207 -101223237 - L1MB8 LINE L1 -352 5826 5662 753 188 13 7 chr9 41048201 41048355 -101223089 - L1M4 LINE L1 -6380 162 8 * 1798 119 70 3 chr9 41048375 41048661 -101222783 - AluSg SINE Alu -4 306 2 225 346 38 62 chr9 41048771 41048982 -101222462 + L2 LINE L2 2440 2645 -669 1278 187 50 40 chr9 41049165 41049326 -101222118 - L1MC2 LINE L1 -72 6272 6105 1541 176 3 33 chr9 41049326 41049627 -101221817 - AluJo SINE Alu -20 292 1 1278 187 50 40 chr9 41049627 41049765 -101221679 - L1MC2 LINE L1 -239 6105 5970 2111 123 0 0 chr9 41049799 41050099 -101221345 + AluSx SINE Alu 1 300 -12 248 236 0 0 chr9 41050151 41050206 -101221238 + CT-rich Low_complexity Low_complexity 2 56 0 392 272 96 7 chr9 41050207 41050343 -101221101 - MIR SINE MIR -83 179 32 2261 76 10 19 chr9 41050370 41050684 -101220760 - AluY SINE Alu 0 311 1 262 376 57 21 chr9 41050705 41050846 -101220598 + L2 LINE L2 3122 3267 -5 2243 102 0 0 chr9 41052640 41052944 -101218500 - AluSq SINE Alu -9 304 1 285 307 97 23 chr9 41053120 41053296 -101218148 - MER5A DNA MER1_type 0 189 1 246 253 13 38 chr9 41053731 41053810 -101217634 - MIR SINE MIR -166 96 20 1245 241 92 48 chr9 41053870 41054393 -101217051 - L1MC4 LINE L1 0 8042 7497 218 372 149 16 chr9 41054562 41054750 -101216694 + MIR SINE MIR 50 262 0 264 261 71 17 chr9 41055435 41055555 -101215889 - LTR33A LTR ERVL -344 179 35 655 291 20 72 chr9 41055612 41055959 -101215485 + MLT1K LTR MaLR 258 586 -2 2021 105 37 10 chr9 41056068 41056364 -101215080 + AluSx SINE Alu 1 304 -8 1185 172 0 9 chr9 41056434 41056655 -101214789 - AluJb SINE Alu -8 304 86 239 185 31 46 chr9 41057626 41057691 -101213753 + MIR SINE MIR 82 145 -63 568 161 198 31 chr9 41059514 41059676 -101211768 + MER53 DNA DNA 1 189 0 447 293 66 56 chr9 41059867 41060065 -101211379 + L2 LINE L2 3073 3272 0 851 206 178 0 chr9 41060075 41060289 -101211155 - MIR SINE MIR -6 256 5 180 217 0 0 chr9 41060294 41060340 -101211104 + (TGAA)n Simple_repeat Simple_repeat 3 48 0 3665 156 25 29 chr9 41060974 41061025 -101210419 - L1MB2 LINE L1 -7 6164 6114 1622 173 17 3 chr9 41061025 41061325 -101210119 - AluSx SINE Alu -8 304 1 3665 156 25 29 chr9 41061325 41061990 -101209454 - L1MB2 LINE L1 -57 6114 5451 313 264 58 13 chr9 41062321 41062476 -101208968 - L1ME4a LINE L1 0 6121 5960 1959 115 14 11 chr9 41063070 41063357 -101208087 - AluSx SINE Alu -24 288 1 209 322 0 0 chr9 41063505 41063564 -101207880 + MIR SINE MIR 204 262 0 2031 141 0 3 chr9 41063715 41064028 -101207416 - AluSx SINE Alu 0 312 1 393 22 0 0 chr9 41064089 41064135 -101207309 + (TG)n Simple_repeat Simple_repeat 2 47 0 2691 127 42 0 chr9 41064238 41064647 -101206797 + MSTB LTR MaLR 1 426 0 2806 0 0 0 chr9 41064888 41065196 -101206248 + AluYa8 SINE Alu 1 308 -2 419 294 20 46 chr9 41065781 41065934 -101205510 - MIR3 SINE MIR -10 198 50 321 261 127 35 chr9 41066325 41066467 -101204977 - L1ME4a LINE L1 -252 5869 5715 237 297 172 0 chr9 41066608 41066753 -101204691 - L1ME4a LINE L1 -2212 3934 3765 572 295 103 67 chr9 41066799 41067264 -101204180 - L1ME4a LINE L1 -2369 3777 3296 2164 117 0 0 chr9 41067567 41067875 -101203569 - AluSx SINE Alu -4 308 1 322 317 181 34 chr9 41069088 41069381 -101202063 - MLT1K LTR MaLR -122 466 131 333 131 12 24 chr9 41069408 41069423 -101202021 + GA-rich Low_complexity Low_complexity 1 15 -68 1610 187 10 3 chr9 41069423 41069545 -101201899 + AluJo SINE Alu 6 126 -186 207 0 0 0 chr9 41069545 41069568 -101201876 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1610 187 10 3 chr9 41069568 41069745 -101201699 + AluJo SINE Alu 126 307 -5 333 131 12 24 chr9 41069745 41069813 -101201631 + GA-rich Low_complexity Low_complexity 15 83 0 255 299 66 103 chr9 41069930 41070278 -101201166 - L2 LINE L2 -96 3176 2842 243 0 0 0 chr9 41070735 41070762 -101200682 + (TA)n Simple_repeat Simple_repeat 1 27 0 311 265 69 16 chr9 41070787 41070976 -101200468 - L1ME4a LINE L1 -3 6118 5920 4257 163 61 45 chr9 41071154 41071354 -101200090 - L1MB7 LINE L1 -16 6168 5973 2075 135 0 0 chr9 41071354 41071650 -101199794 - AluSx SINE Alu -16 296 1 4257 163 61 45 chr9 41071650 41072023 -101199421 - L1MB7 LINE L1 -211 5973 5608 2133 107 13 0 chr9 41072023 41072323 -101199121 + AluSg SINE Alu 1 304 -6 4257 163 61 45 chr9 41072323 41072478 -101198966 - L1MB7 LINE L1 -576 5608 5457 2059 125 13 19 chr9 41072478 41072791 -101198653 - AluJo SINE Alu -1 311 1 4257 163 61 45 chr9 41072791 41073082 -101198362 - L1MB7 LINE L1 -727 5457 5123 1975 120 40 0 chr9 41073131 41073431 -101198013 - AluSx SINE Alu 0 312 1 490 291 52 24 chr9 41073851 41074061 -101197383 + MIR SINE MIR 37 252 -10 231 346 95 34 chr9 41074549 41074728 -101196716 + MIR3 SINE MIR 1 190 -18 285 303 16 33 chr9 41075004 41075126 -101196318 + L2 LINE L2 2638 2757 -557 428 269 70 9 chr9 41075887 41076050 -101195394 - MIR3 SINE MIR -23 185 15 362 297 14 26 chr9 41076184 41076356 -101195088 + GA-rich Low_complexity Low_complexity 1 288 0 183 326 22 0 chr9 41076704 41076750 -101194694 + L3 LINE CR1 1519 1565 -12 226 351 53 0 chr9 41076928 41077022 -101194422 - MIR3 SINE MIR 0 208 110 225 180 0 62 chr9 41077653 41077831 -101193613 + (TGG)n Simple_repeat Simple_repeat 3 169 0 305 356 6 6 chr9 41077868 41078045 -101193399 + (TGG)n Simple_repeat Simple_repeat 2 178 0 545 281 0 27 chr9 41078075 41078158 -101193286 + (TGG)n Simple_repeat Simple_repeat 1 85 -95 2029 209 25 39 chr9 41078158 41078670 -101192774 - MLT1D LTR MaLR 0 505 1 545 281 0 27 chr9 41078670 41078771 -101192673 + (TGG)n Simple_repeat Simple_repeat 85 180 0 1971 125 7 0 chr9 41079087 41079376 -101192068 + AluSx SINE Alu 1 291 -21 338 328 138 0 chr9 41080695 41080782 -101190662 - MIR SINE MIR -10 252 178 1717 149 4 4 chr9 41080782 41081063 -101190381 - AluSx SINE Alu -31 281 1 338 328 138 0 chr9 41081063 41081149 -101190295 - MIR SINE MIR -84 178 55 479 229 169 60 chr9 41081898 41082049 -101189395 + L2 LINE L2 2851 2984 -329 183 42 0 0 chr9 41082049 41082073 -101189371 + (TTTC)n Simple_repeat Simple_repeat 2 25 0 479 229 169 60 chr9 41082073 41082188 -101189256 + L2 LINE L2 2984 3146 -167 1325 135 38 135 chr9 41082188 41082581 -101188863 - LTR37B LTR ERV1 0 468 114 448 240 71 26 chr9 41082582 41082736 -101188708 + MER3 DNA MER1_type 1 161 -48 215 188 62 16 chr9 41082754 41083167 -101188277 + (TTATA)n Simple_repeat Simple_repeat 4 137 0 250 135 54 14 chr9 41082810 41082849 -101188595 + (TA)n Simple_repeat Simple_repeat 1 37 -40 1523 199 0 3 chr9 41082849 41083135 -101188309 + AluSx SINE Alu 1 285 -27 250 135 54 14 chr9 41083135 41083169 -101188275 + (TA)n Simple_repeat Simple_repeat 37 77 0 330 165 38 0 chr9 41083205 41083284 -101188160 + MER3 DNA MER1_type 128 209 0 280 160 20 0 chr9 41083242 41083292 -101188152 - MER3 DNA MER1_type -119 90 40 * 539 234 66 36 chr9 41083367 41083534 -101187910 + L2 LINE L2 3142 3313 0 220 185 15 46 chr9 41084101 41084166 -101187278 + CT-rich Low_complexity Low_complexity 3 65 0 189 252 243 0 chr9 41084599 41084710 -101186734 - MIR3 SINE MIR -60 148 11 537 277 43 0 chr9 41085122 41085263 -101186181 - MIR3 SINE MIR -21 187 41 205 161 0 0 chr9 41085312 41085343 -101186101 + (CATCT)n Simple_repeat Simple_repeat 3 33 0 296 151 68 55 chr9 41085901 41085974 -101185470 - MLT1K LTR MaLR -5 583 510 3592 167 30 37 chr9 41087402 41087975 -101183469 - L1MB3 LINE L1 -7 6176 5608 1437 153 24 103 chr9 41087975 41088315 -101183129 - AluYb8 SINE Alu -5 313 1 3592 167 30 37 chr9 41088315 41088476 -101182968 - L1MB3 LINE L1 -575 5608 5447 203 250 95 17 chr9 41089072 41089188 -101182256 + L2 LINE L2 1980 2104 -1210 401 279 6 51 chr9 41090405 41090563 -101180881 - L2 LINE L2 -912 2402 2252 669 207 8 117 chr9 41090565 41090821 -101180623 - MLT1K LTR MaLR 0 588 361 941 306 50 62 chr9 41091713 41092279 -101179165 - L1MC4a LINE L1 -4 6117 5559 339 323 89 13 chr9 41092398 41092556 -101178888 - L1MC4a LINE L1 -2258 5550 5381 491 281 137 28 chr9 41092589 41093019 -101178425 - L1ME LINE L1 -304 6097 5621 324 256 23 83 chr9 41093609 41093742 -101177702 - L1ME LINE L1 -4323 2103 1979 282 29 0 0 chr9 41093762 41093797 -101177647 + (TG)n Simple_repeat Simple_repeat 2 36 0 1898 112 65 10 chr9 41093953 41094247 -101177197 - AluSx SINE Alu -1 311 2 930 130 68 7 chr9 41094275 41094419 -101177025 - MER30B DNA MER1_type 0 230 78 6455 158 168 26 chr9 41094419 41095949 -101175495 + MER52A LTR ERV1 1 1755 0 536 95 0 0 chr9 41095950 41096024 -101175420 - MER30B DNA MER1_type -113 77 4 358 213 12 0 chr9 41096027 41096107 -101175337 - L1ME2 LINE L1 -39 6125 6045 937 110 7 7 chr9 41096112 41096248 -101175196 + U8 snRNA snRNA 1 136 0 3015 189 27 24 chr9 41096290 41096961 -101174483 - L1ME2 LINE L1 -112 6052 5380 596 129 139 0 chr9 41097047 41097148 -101174296 - AluJo SINE Alu -177 135 21 478 291 116 69 chr9 41097150 41097556 -101173888 - L1ME2 LINE L1 -1054 5092 4650 2366 187 87 13 chr9 41097556 41098026 -101173418 + MLT1D LTR MaLR 1 505 0 478 291 116 69 chr9 41098026 41098150 -101173294 - L1ME2 LINE L1 -1496 4650 4533 928 252 22 0 chr9 41098218 41098440 -101173004 - LTR16C LTR ERVL -9 482 256 1066 254 134 20 chr9 41098749 41099151 -101172293 + LTR16C LTR ERVL 44 491 0 305 211 18 0 chr9 41100076 41100133 -101171311 - MIR SINE MIR -69 139 82 1709 174 11 14 chr9 41100445 41100761 -101170683 + AluJb SINE Alu 1 315 0 393 332 97 0 chr9 41101109 41101326 -101170118 - L1ME4a LINE L1 -282 5839 5602 231 222 0 0 chr9 41101455 41101500 -101169944 + MIR SINE MIR 108 152 -110 2146 135 3 6 chr9 41101520 41101832 -101169612 - AluSq SINE Alu -2 311 1 230 303 15 15 chr9 41101976 41102042 -101169402 - L2 LINE L2 -21 3292 3227 362 326 53 8 chr9 41102441 41102573 -101168871 - MIR SINE MIR -39 223 86 218 234 52 91 chr9 41103090 41103167 -101168277 + MIR SINE MIR 30 103 -105 224 264 164 27 chr9 41103306 41103416 -101168028 + L2 LINE L2 3147 3271 -1 308 338 58 0 chr9 41103602 41103741 -101167703 + L2 LINE L2 3104 3250 -22 1834 150 11 72 chr9 41103973 41104254 -101167190 - MLT1A1 LTR MaLR 0 365 111 2422 112 0 0 chr9 41104254 41104559 -101166885 - AluSx SINE Alu -7 305 1 1834 150 11 72 chr9 41104559 41104651 -101166793 - MLT1A1 LTR MaLR -254 111 15 590 260 276 0 chr9 41104747 41104928 -101166516 + MIR SINE MIR 27 257 -5 2477 85 3 0 chr9 41105046 41105351 -101166093 + AluSp SINE Alu 1 306 -7 448 180 63 36 chr9 41105395 41105506 -101165938 - MIR3 SINE MIR -81 127 14 430 278 113 14 chr9 41105906 41106118 -101165326 + L2 LINE L2 2555 2787 -527 720 80 0 0 chr9 41106142 41106230 -101165214 + AluSc SINE Alu 2 89 -220 1762 200 145 20 chr9 41106392 41106841 -101164603 - MLT1D LTR MaLR 0 505 1 710 218 94 59 chr9 41108184 41108390 -101163054 - MIR SINE MIR -14 248 37 349 234 95 108 chr9 41108423 41108581 -101162863 - MIR3 SINE MIR -17 191 36 864 238 48 65 chr9 41109053 41109406 -101162038 - L1ME3A LINE L1 -219 5951 5605 416 186 152 28 chr9 41109468 41109613 -101161831 - LTR50 LTR ERVL -617 178 16 192 313 62 80 chr9 41109706 41109994 -101161450 + L2 LINE L2 2833 3115 -157 333 269 198 44 chr9 41110092 41110211 -101161233 - L1ME4a LINE L1 -72 6049 5950 1511 181 10 47 chr9 41110211 41110510 -101160934 - AluJo SINE Alu -24 288 1 333 269 198 44 chr9 41110510 41110617 -101160827 - L1ME4a LINE L1 -171 5950 5788 529 270 87 61 chr9 41111024 41111455 -101159989 - L1ME4a LINE L1 -376 5745 5301 264 333 139 14 chr9 41111538 41111682 -101159762 + L2 LINE L2 3106 3267 -5 266 241 259 0 chr9 41111781 41111889 -101159555 - L2 LINE L2 0 3272 3137 746 233 23 51 chr9 41112003 41112218 -101159226 - MER58C DNA MER1_type -6 209 1 317 157 229 36 chr9 41112227 41112310 -101159134 - MIR3 SINE MIR -6 202 104 299 227 128 50 chr9 41113099 41113240 -101158204 + MIR3 SINE MIR 47 198 -10 218 358 8 0 chr9 41113532 41113655 -101157789 + (TG)n Simple_repeat Simple_repeat 1 124 0 391 214 149 91 chr9 41113867 41113965 -101157479 - MER5A DNA MER1_type 0 189 77 1867 182 0 19 chr9 41113965 41114272 -101157172 - AluJo SINE Alu -11 301 1 391 214 149 91 chr9 41114272 41114327 -101157117 - MER5A DNA MER1_type -112 77 27 1048 211 4 40 chr9 41114383 41114455 -101156989 + MER58A DNA MER1_type 5 78 -2342 944 210 17 6 chr9 41114455 41114631 -101156813 - MER45A DNA AcHobo 0 178 1 1048 211 4 40 chr9 41114631 41114786 -101156658 + MER58A DNA MER1_type 78 224 0 447 219 70 15 chr9 41114803 41114958 -101156486 - MER5B DNA MER1_type -7 171 15 707 250 103 0 chr9 41115948 41116132 -101155312 - MIR SINE MIR -52 210 8 2273 121 0 0 chr9 41117105 41117402 -101154042 + AluSg SINE Alu 1 297 -13 680 101 28 0 chr9 41117428 41117537 -101153907 + CT-rich Low_complexity Low_complexity 4 115 0 2189 142 3 0 chr9 41117537 41117846 -101153598 - AluSx SINE Alu -2 310 1 443 225 81 9 chr9 41117957 41118068 -101153376 + LTR34 LTR ERV1 48 166 -533 686 222 46 42 chr9 41118241 41118457 -101152987 + LTR33 LTR ERVL 1 217 -304 1379 189 0 0 chr9 41118517 41118739 -101152705 - AluSx SINE Alu -90 222 1 2143 115 0 0 chr9 41118797 41119075 -101152369 + AluSg SINE Alu 1 278 -32 251 0 59 0 chr9 41119078 41119112 -101152332 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 314 224 13 0 chr9 41119118 41119194 -101152250 + LTR33 LTR ERVL 328 404 -117 3137 93 83 4 chr9 41119503 41119998 -101151446 + LTR34 LTR ERV1 166 699 0 1300 227 59 59 chr9 41120049 41120219 -101151225 + MLT1J LTR MaLR 52 221 -290 2316 104 7 3 chr9 41120219 41120526 -101150918 + AluSc SINE Alu 1 308 -1 1300 227 59 59 chr9 41120526 41120778 -101150666 + MLT1J LTR MaLR 220 474 -37 469 82 0 0 chr9 41120826 41120887 -101150557 + LTR10A LTR ERV1 1 61 -548 964 83 0 8 chr9 41120900 41121033 -101150411 - LTR10A LTR ERV1 -62 547 416 309 294 20 10 chr9 41121976 41122078 -101149366 + MIR SINE MIR 45 147 -61 419 192 150 31 chr9 41122556 41122698 -101148746 + MIR SINE MIR 36 192 -63 356 304 91 18 chr9 41123790 41124010 -101147434 + MER113 DNA MER1_type? 245 480 -41 848 223 0 12 chr9 41124095 41124261 -101147183 - FRAM SINE Alu -2 164 1 245 254 65 162 chr9 41124320 41124505 -101146939 - MIR3 SINE MIR -5 203 37 219 184 161 69 chr9 41125494 41125581 -101145863 - MIR SINE MIR -50 212 118 222 37 0 0 chr9 41125908 41125935 -101145509 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 1387 81 17 0 chr9 41126819 41126993 -101144451 - AluSx SINE Alu -135 177 1 6559 186 25 8 chr9 41126993 41127209 -101144235 - L1 LINE L1 -2356 3790 3579 2617 71 0 0 chr9 41127209 41127517 -101143927 - AluY SINE Alu -3 308 1 6559 186 25 8 chr9 41127517 41128737 -101142707 - L1 LINE L1 -2567 3579 2330 2511 217 104 31 chr9 41128761 41129080 -101142364 + L1ME1 LINE L1 4811 5105 -1061 2123 109 0 11 chr9 41129080 41129392 -101142052 + AluSx SINE Alu 6 312 0 2511 217 104 31 chr9 41129392 41130340 -101141104 + L1ME1 LINE L1 5105 6161 -5 404 297 63 33 chr9 41130510 41130804 -101140640 + L2 LINE L2 2778 3077 -195 499 285 35 0 chr9 41130830 41130974 -101140470 + MIR SINE MIR 106 254 -8 189 286 0 0 chr9 41131098 41131140 -101140304 + L2 LINE L2 3136 3177 -95 262 239 28 14 chr9 41131163 41131234 -101140210 - L2 LINE L2 -5 3308 3237 577 198 141 22 chr9 41131269 41131435 -101140009 + MIR SINE MIR 13 178 -54 1391 124 0 0 chr9 41131439 41131632 -101139812 - AluSg/x SINE Alu 0 312 120 4346 29 0 15 chr9 41131732 41132213 -101139231 + SVA Other Other 913 1386 0 272 268 0 37 chr9 41132557 41132639 -101138805 - LTR16C LTR ERVL 0 491 413 235 173 96 0 chr9 41133166 41133218 -101138226 - L1ME3 LINE L1 -12 6150 6094 2497 89 0 0 chr9 41133301 41133603 -101137841 + AluSx SINE Alu 1 302 -10 2346 285 37 7 chr9 41133918 41134045 -101137399 - ERVL LTR ERVL -436 5328 5206 2471 71 0 3 chr9 41134045 41134355 -101137089 - AluY SINE Alu -2 309 1 2346 285 37 7 chr9 41134355 41134963 -101136481 - ERVL LTR ERVL -558 5206 4571 608 322 8 19 chr9 41135343 41135604 -101135840 - MLT2E LTR ERVL -14 614 357 229 296 6 111 chr9 41135682 41135844 -101135600 - MLT2E LTR ERVL -483 145 1 314 254 0 0 chr9 41135844 41135911 -101135533 + L1ME4a LINE L1 5745 5811 -310 1461 201 19 79 chr9 41135911 41136328 -101135116 - MLT2C1 LTR ERVL 0 397 6 241 339 35 0 chr9 41136479 41136653 -101134791 + L1ME4a LINE L1 5939 6118 -3 251 277 24 0 chr9 41137941 41138024 -101133420 + GA-rich Low_complexity Low_complexity 2 86 0 203 348 134 0 chr9 41138139 41138251 -101133193 - L2 LINE L2 -24 3248 3122 229 261 31 0 chr9 41138286 41138351 -101133093 + L2 LINE L2 3188 3254 -18 188 382 0 0 chr9 41138371 41138447 -101132997 - L2 LINE L2 -12 3301 3226 333 295 114 42 chr9 41138713 41138906 -101132538 + MLT1I LTR MaLR 160 366 -43 374 226 69 101 chr9 41139824 41140130 -101131314 + LTR67 LTR ERVL 255 550 -7 280 303 156 16 chr9 41140500 41140622 -101130822 + MER5A DNA MER1_type 3 141 -48 356 324 131 12 chr9 41141027 41141271 -101130173 - L2 LINE L2 -832 2482 2210 210 71 0 0 chr9 41141449 41141477 -101129967 + (CAGTT)n Simple_repeat Simple_repeat 5 32 0 206 227 0 0 chr9 41141509 41141553 -101129891 - L2 LINE L2 -8 3305 3262 674 314 114 36 chr9 41141961 41142346 -101129098 - L3 LINE CR1 -117 1460 1046 577 229 0 0 chr9 41142621 41142730 -101128714 + MER5A DNA MER1_type 4 112 -77 2509 173 7 12 chr9 41142762 41143190 -101128254 - MSTB LTR MaLR 0 426 1 333 337 122 3 chr9 41143261 41143572 -101127872 + L2 LINE L2 2686 3041 -231 1217 222 60 106 chr9 41143607 41144062 -101127382 + MLT2B1 LTR ERVL 1 520 0 232 342 250 0 chr9 41144092 41144212 -101127232 + L2 LINE L2 3107 3256 -16 291 210 30 140 chr9 41144813 41144913 -101126531 + MER91A DNA MER1_type 1 89 -101 251 140 0 60 chr9 41144955 41145005 -101126439 + MER91B DNA MER1_type 84 130 -60 25 0 0 0 chr9 41145631 41145656 -101125788 + GC_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr9 41145885 41145913 -101125531 + GC_rich Low_complexity Low_complexity 1 28 0 2821 90 21 78 chr9 41145964 41146730 -101124714 + SVA Other Other 393 868 -520 262 200 67 44 chr9 41146894 41146984 -101124460 + MIR3 SINE MIR 87 178 -30 469 297 97 0 chr9 41147364 41147529 -101123915 - MIR SINE MIR -8 254 74 604 197 72 7 chr9 41148640 41148792 -101122652 + Charlie8 DNA MER1_type 39 200 -2217 294 260 120 90 chr9 41149306 41149430 -101122014 + L2 LINE L2 2951 3070 -202 4277 92 0 0 chr9 41149430 41149984 -101121460 + MER41A LTR ERV1 1 554 0 294 260 120 90 chr9 41149984 41150159 -101121285 + L2 LINE L2 3070 3259 -13 1941 141 23 0 chr9 41150196 41150501 -101120943 + AluJb SINE Alu 1 312 0 341 284 132 53 chr9 41150519 41150709 -101120735 + MIR SINE MIR 37 241 -21 242 359 0 13 chr9 41150748 41150826 -101120618 - MIR SINE MIR -90 118 42 216 276 122 49 chr9 41151418 41151541 -101119903 + MIR3 SINE MIR 15 146 -62 314 245 226 0 chr9 41151561 41151663 -101119781 - L2 LINE L2 -16 3297 3173 1827 153 125 11 chr9 41152375 41152728 -101118716 - MSTD LTR MaLR -2 394 2 273 239 45 30 chr9 41152738 41152805 -101118639 - MIR3 SINE MIR -51 157 90 446 257 80 57 chr9 41152865 41153040 -101118404 - MIR SINE MIR -82 180 2 582 240 33 0 chr9 41153081 41153231 -101118213 + MER5B DNA MER1_type 1 155 -23 321 296 0 11 chr9 41153267 41153355 -101118089 - MER5A DNA MER1_type -93 96 10 694 232 30 42 chr9 41153598 41153644 -101117800 - MER96 DNA MER1_type? 0 175 130 2119 93 0 10 chr9 41153644 41153970 -101117474 - AluY SINE Alu 0 311 1 694 232 30 42 chr9 41153970 41154091 -101117353 - MER96 DNA MER1_type? -45 130 10 939 179 27 5 chr9 41154283 41154467 -101116977 + MER5A DNA MER1_type 2 189 0 195 215 154 60 chr9 41154474 41154623 -101116821 + MIR3 SINE MIR 30 192 -16 987 139 12 17 chr9 41155143 41155342 -101116102 - MSTD LTR MaLR -169 196 1 579 218 78 115 chr9 41155342 41155585 -101115859 - MIR SINE MIR -25 237 4 309 214 10 97 chr9 41155686 41155789 -101115655 + MIR SINE MIR 94 187 -75 270 195 74 4 chr9 41155939 41156025 -101115419 - MIR SINE MIR -68 140 49 1595 230 48 58 chr9 41156832 41157422 -101114022 + L1ME2 LINE L1 5588 6164 0 464 233 112 73 chr9 41157452 41157658 -101113786 + L1MC4 LINE L1 7826 8039 -3 1897 122 0 44 chr9 41157688 41157988 -101113456 - AluSq SINE Alu 0 424 141 2226 86 0 0 chr9 41157988 41158312 -101113132 - AluY SINE Alu 0 311 1 1897 122 0 44 chr9 41158312 41158448 -101112996 - AluSq SINE Alu -283 141 1 2253 110 51 25 chr9 41158472 41158827 -101112617 - THE1B LTR MaLR 0 364 1 336 293 90 12 chr9 41158846 41159013 -101112431 - L1MC/D LINE L1 -2019 5789 5610 293 245 160 0 chr9 41159037 41159131 -101112313 - MIR SINE MIR -79 129 21 1922 139 7 13 chr9 41159361 41159671 -101111773 + AluSx SINE Alu 5 312 0 4009 174 35 3 chr9 41159765 41160451 -101110993 + L1MA4 LINE L1 3 710 -4618 5907 214 35 47 chr9 41160480 41161938 -101109506 + L1MA4 LINE L1 772 2195 -4133 2039 138 0 0 chr9 41161938 41162242 -101109202 + AluSx SINE Alu 1 304 -8 5907 214 35 47 chr9 41162242 41162807 -101108637 + L1MA4 LINE L1 2195 2765 -3563 946 198 0 0 chr9 41162827 41162999 -101108445 + FRAM SINE Alu 1 166 -10 9432 153 31 18 chr9 41163002 41164183 -101107261 + L1MA4 LINE L1 3747 4912 -1485 2145 117 0 0 chr9 41164183 41164481 -101106963 + AluSx SINE Alu 1 298 -14 9432 153 31 18 chr9 41164481 41164673 -101106771 + L1MA4 LINE L1 4912 5100 -1297 1691 168 0 30 chr9 41164673 41164977 -101106467 + AluJo SINE Alu 3 297 -15 221 0 0 33 chr9 41164980 41165010 -101106434 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 9432 153 31 18 chr9 41165010 41165515 -101105929 + L1MA4 LINE L1 5101 5654 -743 3812 148 14 2 chr9 41165596 41166239 -101105205 + L1MA4 LINE L1 5825 6475 -7 2812 122 69 4 chr9 41167068 41167518 -101103926 + LTR10A LTR ERV1 69 547 -62 357 232 24 12 chr9 41167807 41167889 -101103555 - MER5A DNA MER1_type -77 112 30 250 278 0 0 chr9 41167955 41168009 -101103435 + L2 LINE L2 3219 3272 0 308 214 79 11 chr9 41168017 41168106 -101103338 - MER103 DNA DNA -70 96 2 21 36 0 0 chr9 41169038 41169066 -101102378 + AT_rich Low_complexity Low_complexity 1 28 0 408 290 77 48 chr9 41169494 41169873 -101101571 + HAL1b LINE L1 351 740 -608 2357 83 0 0 chr9 41170014 41170315 -101101129 + AluY SINE Alu 1 301 -10 22 70 0 0 chr9 41170371 41170414 -101101030 + AT_rich Low_complexity Low_complexity 1 43 0 2606 159 96 11 chr9 41170680 41171201 -101100243 + L1MB4 LINE L1 5616 6180 0 450 0 0 0 chr9 41171334 41171384 -101100060 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 655 193 0 9 chr9 41171387 41171501 -101099943 - FLAM_C SINE Alu -26 117 5 1821 218 29 73 chr9 41171797 41172992 -101098452 - L1MC4 LINE L1 -262 7780 6483 1327 164 168 13 chr9 41172992 41173290 -101098154 + MER2 DNA MER2_type 1 344 0 1821 218 29 73 chr9 41173290 41173314 -101098130 - L1MC4 LINE L1 -1559 6483 6459 2117 159 19 65 chr9 41174190 41174618 -101096826 - MLT2D LTR ERVL -6 408 1 1755 198 37 26 chr9 41175037 41175416 -101096028 - MLT1B LTR MaLR -7 383 1 357 24 0 0 chr9 41176384 41176426 -101095018 + (TG)n Simple_repeat Simple_repeat 1 42 0 1540 184 11 46 chr9 41177965 41177999 -101093445 - L1MB8 LINE L1 -6 6172 6138 1783 150 155 26 chr9 41177999 41178379 -101093065 - MSTB1 LTR MaLR 0 432 4 1540 184 11 46 chr9 41178379 41178714 -101092730 - L1MB8 LINE L1 -40 6138 5816 356 333 12 29 chr9 41179428 41179599 -101091845 + L1M4 LINE L1 3717 3884 -2262 2454 136 57 2 chr9 41179744 41180145 -101091299 - MSTB1 LTR MaLR 0 419 14 274 277 143 8 chr9 41180145 41180264 -101091180 - L1MC4 LINE L1 -593 7449 7315 544 219 73 0 chr9 41180384 41180521 -101090923 - MIR SINE MIR 0 262 116 192 77 0 0 chr9 41180603 41180629 -101090815 + (A)n Simple_repeat Simple_repeat 1 26 0 1780 142 22 26 chr9 41180652 41180791 -101090653 + AluSx SINE Alu 1 139 -173 2308 86 3 0 chr9 41180791 41181095 -101090349 + AluSp SINE Alu 1 305 -8 1780 142 22 26 chr9 41181095 41181266 -101090178 + AluSx SINE Alu 139 310 -2 195 42 0 0 chr9 41182261 41182285 -101089159 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 403 277 104 42 chr9 41182375 41182635 -101088809 - MLT1J LTR MaLR -9 502 227 1116 199 99 70 chr9 41182677 41182719 -101088725 - Zaphod DNA AcHobo 0 4031 3992 1690 123 21 99 chr9 41182719 41183053 -101088391 + AluYb8 SINE Alu 1 308 -10 1116 199 99 70 chr9 41183053 41183436 -101088008 - Zaphod DNA AcHobo -39 3992 3594 1816 165 76 3 chr9 41183443 41183758 -101087686 + MER1B DNA MER1_type 1 338 -1 844 241 61 5 chr9 41183767 41183979 -101087465 + MER58A DNA MER1_type 1 224 0 2654 233 43 68 chr9 41183996 41184073 -101087371 - Zaphod DNA AcHobo -3061 970 893 2180 126 0 0 chr9 41184073 41184374 -101087070 + AluSx SINE Alu 1 301 -11 2654 233 43 68 chr9 41184374 41184473 -101086971 - Zaphod DNA AcHobo -3138 893 793 519 139 50 20 chr9 41184473 41184574 -101086870 + U13 snRNA snRNA 1 104 0 2654 233 43 68 chr9 41184574 41185312 -101086132 - Zaphod DNA AcHobo -3238 793 38 1688 199 65 8 chr9 41185312 41185684 -101085760 - MSTD LTR MaLR -2 394 2 417 20 0 0 chr9 41185686 41185736 -101085708 + (TG)n Simple_repeat Simple_repeat 1 50 0 342 0 0 0 chr9 41185735 41185773 -101085671 + (GA)n Simple_repeat Simple_repeat 1 38 0 * 2654 233 43 68 chr9 41185736 41185815 -101085629 - Zaphod DNA AcHobo -3994 37 33 1108 189 112 45 chr9 41187821 41188133 -101083311 + MLT1D LTR MaLR 1 333 -172 1931 74 0 4 chr9 41188150 41188394 -101083050 + LTR8 LTR ERV1 1 243 -448 2964 108 5 5 chr9 41188675 41189082 -101082362 + LTR8 LTR ERV1 246 652 -39 492 165 12 0 chr9 41189091 41189176 -101082268 + MLT1D LTR MaLR 371 456 -49 3581 147 7 17 chr9 41189183 41189402 -101082042 + MER50 LTR ERV1 1 221 -513 2017 122 3 13 chr9 41189402 41189705 -101081739 + AluSx SINE Alu 1 300 -12 3581 147 7 17 chr9 41189705 41190064 -101081380 + MER50 LTR ERV1 221 573 -161 745 137 7 50 chr9 41190065 41190204 -101081240 - FLAM_C SINE Alu -9 134 2 819 164 13 13 chr9 41190205 41190357 -101081087 + MER50 LTR ERV1 560 711 -23 246 324 37 9 chr9 41190506 41190614 -101080830 - MIR SINE MIR -87 175 65 656 232 105 11 chr9 41190660 41190841 -101080603 + MIR3 SINE MIR 5 202 -6 1054 167 8 91 chr9 41191071 41191323 -101080121 - AluJo SINE Alu -19 293 63 743 207 157 80 chr9 41191937 41192236 -101079208 + MER115 DNA AcHobo 112 433 -260 200 261 57 34 chr9 41192371 41192459 -101078985 - L2 LINE L2 -213 3059 2970 1999 112 20 0 chr9 41192992 41193287 -101078157 + AluSx SINE Alu 1 301 -11 629 302 107 47 chr9 41193462 41193892 -101077552 - MLT1K LTR MaLR -8 580 125 292 331 39 65 chr9 41195341 41195495 -101075949 - MIR3 SINE MIR -1 207 58 262 0 53 0 chr9 41196369 41196407 -101075037 + (TGGGGG)n Simple_repeat Simple_repeat 2 41 0 413 313 108 38 chr9 41196822 41197062 -101074382 + L3 LINE CR1 1306 1562 -15 368 177 0 0 chr9 41197473 41197535 -101073909 + MIR SINE MIR 89 150 -112 292 299 11 11 chr9 41197608 41197695 -101073749 + MER117 DNA MER1_type 111 197 0 300 53 0 0 chr9 41197870 41197908 -101073536 + (TTCC)n Simple_repeat Simple_repeat 4 41 0 2039 141 0 0 chr9 41197927 41198239 -101073205 - AluSx SINE Alu 0 312 1 344 353 72 14 chr9 41198604 41198825 -101072619 + L2 LINE L2 2817 3050 -222 1674 151 52 119 chr9 41199219 41199682 -101071762 - MSTB1 LTR MaLR 0 432 1 2169 129 45 3 chr9 41199915 41200249 -101071195 + MER7A DNA MER2_type 1 346 0 428 198 96 108 chr9 41200394 41200551 -101070893 + MIR SINE MIR 78 232 -30 2265 87 3 0 chr9 41200645 41200943 -101070501 - AluSp SINE Alu -14 299 1 999 98 0 0 chr9 41200945 41201077 -101070367 - AluSp SINE Alu -181 132 1 1637 176 6 29 chr9 41201077 41201390 -101070054 - AluJb SINE Alu -6 306 1 2071 221 65 25 chr9 41201408 41201934 -101069510 - MLT1H LTR MaLR -2 547 1 1020 275 64 38 chr9 41202621 41202966 -101068478 + MLT1H LTR MaLR 1 354 -195 322 167 167 24 chr9 41202949 41203033 -101068411 + MLT1I LTR MaLR 281 376 -33 * 446 301 41 53 chr9 41203120 41203347 -101068097 + L2 LINE L2 2800 3023 -249 225 188 0 0 chr9 41203417 41203465 -101067979 + (TA)n Simple_repeat Simple_repeat 2 49 0 2381 136 20 83 chr9 41203524 41203596 -101067848 - MSTA LTR MaLR 0 428 353 1792 109 8 4 chr9 41203596 41203852 -101067592 + AluSq SINE Alu 1 257 -56 2381 136 20 83 chr9 41203852 41204236 -101067208 - MSTA LTR MaLR -75 353 1 222 224 224 0 chr9 41204294 41204352 -101067092 + L2 LINE L2 3201 3271 -1 195 42 0 0 chr9 41204556 41204580 -101066864 + (A)n Simple_repeat Simple_repeat 1 24 0 364 318 24 65 chr9 41205250 41205420 -101066024 + L2 LINE L2 3109 3271 -1 255 266 55 9 chr9 41205434 41205543 -101065901 - L1ME4a LINE L1 -67 6054 5941 2235 82 3 13 chr9 41205562 41205868 -101065576 - AluY SINE Alu -8 303 1 482 283 115 45 chr9 41205888 41206174 -101065270 - L1ME4a LINE L1 -263 5858 5553 209 273 20 61 chr9 41206301 41206400 -101065044 + MIR SINE MIR 108 202 -60 195 269 108 21 chr9 41206767 41206860 -101064584 + MIR3 SINE MIR 87 187 -21 369 275 33 50 chr9 41207188 41207308 -101064136 + MIR SINE MIR 145 262 0 221 301 107 10 chr9 41207633 41207736 -101063708 + L2 LINE L2 3140 3252 -20 521 340 0 6 chr9 41207736 41207895 -101063549 - L2 LINE L2 0 3313 3156 284 315 161 0 chr9 41208351 41208500 -101062944 - L2 LINE L2 -469 2845 2673 219 280 0 0 chr9 41208780 41208830 -101062614 + G-rich Low_complexity Low_complexity 3 52 0 204 163 23 0 chr9 41209169 41209212 -101062232 + (TAA)n Simple_repeat Simple_repeat 2 45 0 537 231 124 24 chr9 41209314 41209483 -101061961 + L2 LINE L2 3128 3313 0 359 275 34 54 chr9 41209482 41209631 -101061813 - L3 LINE CR1 -115 1462 1317 * 223 274 306 8 chr9 41209735 41209859 -101061585 - L3 LINE CR1 -429 1148 988 1213 225 60 67 chr9 41210091 41210659 -101060785 + L1MEc LINE L1 2080 2604 -3611 1906 144 3 3 chr9 41210659 41210957 -101060487 - AluJo SINE Alu -6 306 9 1213 225 60 67 chr9 41210957 41211049 -101060395 + L1MEc LINE L1 2604 2695 -3520 2167 110 7 0 chr9 41211244 41211553 -101059891 + AluSx SINE Alu 1 311 -1 1098 276 43 18 chr9 41211598 41212049 -101059395 + L1MDa LINE L1 1809 2311 -4410 9049 129 22 19 chr9 41212064 41213077 -101058367 - L1MA3 LINE L1 0 6305 5296 2085 106 0 3 chr9 41213077 41213403 -101058041 - AluSq SINE Alu 0 325 1 9049 129 22 19 chr9 41213403 41214660 -101056784 - L1MA3 LINE L1 -1009 5296 4012 2125 119 0 0 chr9 41214660 41214954 -101056490 - AluSx SINE Alu -18 294 1 9049 129 22 19 chr9 41214954 41215183 -101056261 - L1MA3 LINE L1 -2293 4012 3785 226 188 20 0 chr9 41216100 41216201 -101055243 + (TA)n Simple_repeat Simple_repeat 1 103 0 1936 116 7 10 chr9 41216205 41216498 -101054946 - AluSx SINE Alu -20 292 1 1301 260 85 16 chr9 41216559 41216982 -101054462 + LTR16B LTR ERVL 1 452 -12 3251 299 55 35 chr9 41216998 41218390 -101053054 + HERV16 LTR ERVL 12 1431 -3565 1768 191 31 28 chr9 41218482 41218839 -101052605 + MLT1A2 LTR MaLR 1 358 -16 1200 201 18 0 chr9 41218840 41219064 -101052380 + MLT2B3 LTR ERVL 5 232 -322 873 206 50 40 chr9 41219082 41219281 -101052163 - MLT1A2 LTR MaLR -85 289 89 1581 172 10 17 chr9 41219285 41219576 -101051868 + MLT2B3 LTR ERVL 251 539 -15 801 310 41 21 chr9 41219617 41219907 -101051537 + HERV16 LTR ERVL 1614 1909 -3087 1417 196 57 0 chr9 41219919 41220184 -101051260 - MER58 DNA MER1_type -59 282 3 276 280 0 13 chr9 41220868 41220943 -101050501 - Charlie8 DNA MER1_type -3 2414 2341 2115 127 0 0 chr9 41220996 41221303 -101050141 - AluSx SINE Alu -5 307 1 267 286 0 0 chr9 41221351 41221407 -101050037 - Charlie8 DNA MER1_type -2360 57 2 463 264 17 46 chr9 41221477 41221651 -101049793 - MIR3 SINE MIR -37 171 3 471 293 111 50 chr9 41222443 41222723 -101048721 + L3 LINE CR1 1257 1553 -24 215 319 159 0 chr9 41223681 41223750 -101047694 + L2 LINE L2 3111 3190 -82 469 215 131 12 chr9 41223908 41224189 -101047255 + LTR16A1 LTR ERVL 145 437 -20 197 267 67 0 chr9 41224244 41224304 -101047140 - MIR3 SINE MIR -28 180 117 2763 129 54 0 chr9 41224324 41224767 -101046677 - MER41E LTR ERV1 -45 467 1 441 0 0 0 chr9 41224804 41224853 -101046591 + (TG)n Simple_repeat Simple_repeat 1 49 0 204 326 43 0 chr9 41225866 41225958 -101045486 + MIR SINE MIR 30 125 -83 201 333 81 0 chr9 41225994 41226081 -101045363 - L2 LINE L2 -39 3233 3140 907 188 21 5 chr9 41226316 41226502 -101044942 + MER5A DNA MER1_type 1 189 0 223 261 46 59 chr9 41227260 41227413 -101044031 - L2 LINE L2 -292 2980 2830 393 266 39 16 chr9 41227987 41228115 -101043329 + MIR3 SINE MIR 30 160 -48 916 227 22 4 chr9 41230207 41230436 -101041008 + L2 LINE L2 2831 3063 -250 1020 155 0 30 chr9 41230462 41230662 -101040782 - AluJb SINE Alu 0 312 119 467 291 133 0 chr9 41230666 41230831 -101040613 + L2 LINE L2 3127 3313 0 1215 83 171 10 chr9 41230849 41230950 -101040494 + MER30 DNA MER1_type 2 85 -145 197 33 33 0 chr9 41230950 41230980 -101040464 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 1215 83 171 10 chr9 41230980 41231071 -101040373 + MER30 DNA MER1_type 85 225 -5 495 248 25 0 chr9 41231403 41231524 -101039920 + MIR SINE MIR 88 211 -51 2372 246 10 12 chr9 41231636 41232152 -101039292 - LTR40a LTR ERVL -2 517 3 357 274 205 42 chr9 41232646 41232905 -101038539 - L2 LINE L2 -4 3268 2968 465 229 52 7 chr9 41233051 41233204 -101038240 - L1ME4a LINE L1 0 6121 5962 180 262 0 24 chr9 41234472 41234514 -101036930 + L3b LINE CR1 1522 1562 -21 453 330 178 23 chr9 41235032 41235593 -101035851 + L2 LINE L2 2395 3042 -230 2594 171 39 8 chr9 41235640 41236130 -101035314 + MLT1D LTR MaLR 1 505 0 1961 112 7 0 chr9 41236457 41236760 -101034684 + AluSx SINE Alu 2 306 0 260 264 127 18 chr9 41236852 41236962 -101034482 - MIR3 SINE MIR -3 205 84 604 245 88 19 chr9 41237006 41237165 -101034279 - MIR SINE MIR -91 171 2 454 348 0 11 chr9 41238012 41238279 -101033165 + (CA)n Simple_repeat Simple_repeat 1 264 0 429 246 102 55 chr9 41238799 41238963 -101032481 - MIR SINE MIR -54 208 38 215 183 48 39 chr9 41240302 41240406 -101031038 + (TCTA)n Simple_repeat Simple_repeat 3 107 0 312 268 123 72 chr9 41240407 41240683 -101030761 - L1MEd LINE L1 -4875 1244 955 209 290 32 43 chr9 41240734 41240827 -101030617 + L2 LINE L2 2261 2352 -962 294 260 103 59 chr9 41240885 41241067 -101030377 - MLT1J LTR MaLR -196 315 159 229 360 10 20 chr9 41242297 41242397 -101029047 + MIR SINE MIR 19 117 -91 622 220 74 184 chr9 41242548 41242994 -101028450 - L2 LINE L2 -2 3270 2874 348 233 187 15 chr9 41243883 41244018 -101027426 - MIR3 SINE MIR -19 189 35 1824 254 97 23 chr9 41244231 41244850 -101026594 + L1MEc LINE L1 498 1162 -5234 1410 236 163 2 chr9 41244843 41245279 -101026165 + L1ME1 LINE L1 5598 6103 -63 * 1408 162 41 68 chr9 41245295 41245634 -101025810 + L1MD2 LINE L1 6011 6340 -19 245 252 301 31 chr9 41246198 41246424 -101025020 + LTR67 LTR ERVL 2 288 -269 2381 240 105 31 chr9 41246592 41247366 -101024078 - L2 LINE L2 -123 3190 2475 1315 209 84 50 chr9 41247366 41247725 -101023719 + MLT1A2 LTR MaLR 1 371 -3 2381 240 105 31 chr9 41247725 41247940 -101023504 - L2 LINE L2 -838 2475 2277 14430 144 16 42 chr9 41247940 41248292 -101023152 - Tigger1 DNA MER2_type 0 2418 2059 1464 114 0 0 chr9 41248292 41248493 -101022951 + AluSx SINE Alu 1 201 -111 14430 144 16 42 chr9 41248493 41248605 -101022839 - Tigger1 DNA MER2_type -359 2059 1946 2181 92 0 0 chr9 41248605 41248922 -101022522 - AluSx SINE Alu 0 317 1 14430 144 16 42 chr9 41248922 41249346 -101022098 - Tigger1 DNA MER2_type -472 1946 1513 2214 83 0 40 chr9 41249346 41249670 -101021774 - AluY SINE Alu 0 311 1 14430 144 16 42 chr9 41249670 41251258 -101020186 - Tigger1 DNA MER2_type -905 1513 1 2381 240 105 31 chr9 41251258 41251441 -101020003 - L2 LINE L2 -1036 2277 1924 1040 128 26 6 chr9 41251476 41251632 -101019812 + MER70B LTR ERVL 1 159 -419 * 2533 199 36 2 chr9 41251631 41252103 -101019341 + MER70B LTR ERVL 90 577 -1 950 212 121 103 chr9 41252734 41253085 -101018359 + MLT2D LTR ERVL 2 362 -52 596 31 31 10 chr9 41253085 41253181 -101018263 + (TAGA)n Simple_repeat Simple_repeat 1 98 0 950 212 121 103 chr9 41253181 41253235 -101018209 + MLT2D LTR ERVL 362 414 0 234 351 27 9 chr9 41253342 41253453 -101017991 + MIR3 SINE MIR 93 205 -3 241 270 38 82 chr9 41253563 41253722 -101017722 - L2 LINE L2 -271 3001 2850 509 298 86 0 chr9 41253770 41253921 -101017523 - MIR SINE MIR -79 183 20 1565 155 7 15 chr9 41255298 41255569 -101015875 - MER2 DNA MER2_type -76 269 1 411 148 111 12 chr9 41255693 41255728 -101015716 - MLT2C2 LTR ERVL 0 464 434 375 23 0 0 chr9 41255728 41255772 -101015672 + (TG)n Simple_repeat Simple_repeat 2 45 0 411 148 111 12 chr9 41255772 41255817 -101015627 - MLT2C2 LTR ERVL -30 434 376 1837 130 0 40 chr9 41257647 41257969 -101013475 + AluSx SINE Alu 1 309 -3 3334 53 0 5 chr9 41258619 41259031 -101012413 - L1PA8 LINE L1 0 6172 5763 475 65 0 0 chr9 41259031 41259093 -101012351 + L1P3 LINE L1 5656 5717 -455 335 253 99 0 chr9 41259124 41259215 -101012229 - MIR3 SINE MIR -12 196 97 201 286 71 0 chr9 41259312 41259368 -101012076 - MIR SINE MIR -55 153 94 270 221 0 52 chr9 41259422 41259576 -101011868 + CT-rich Low_complexity Low_complexity 3 148 0 797 164 0 0 chr9 41260809 41260931 -101010513 + AluSq/x SINE Alu 2 123 -189 336 249 41 29 chr9 41261563 41261703 -101009741 + MIR SINE MIR 50 149 -59 964 217 95 43 chr9 41261964 41262087 -101009357 + LTR37A LTR ERV1 41 156 -270 2153 97 0 7 chr9 41262087 41262387 -101009057 + AluSg SINE Alu 1 298 -12 964 217 95 43 chr9 41262387 41262590 -101008854 + LTR37A LTR ERV1 156 384 -42 1055 213 42 34 chr9 41262593 41262856 -101008588 - MLT1E3 LTR MaLR 0 624 360 190 333 17 0 chr9 41262875 41262935 -101008509 + L2 LINE L2 2991 3051 -221 511 262 78 21 chr9 41262941 41263082 -101008362 + MIR SINE MIR 2 150 -112 485 276 32 32 chr9 41263139 41263295 -101008149 - MIR SINE MIR -3 259 104 22 35 0 0 chr9 41263630 41263659 -101007785 + AT_rich Low_complexity Low_complexity 1 29 0 530 281 92 57 chr9 41264865 41265144 -101006300 + L1ME4a LINE L1 5125 5393 -728 1864 114 64 10 chr9 41265144 41265441 -101006003 + AluSq SINE Alu 1 313 0 530 281 92 57 chr9 41265441 41266041 -101005403 + L1ME4a LINE L1 5393 6026 -95 204 343 15 0 chr9 41266524 41266591 -101004853 + L2 LINE L2 2875 2942 -330 403 329 50 0 chr9 41266601 41266741 -101004703 - L1MEc LINE L1 -3709 2420 2274 322 347 111 27 chr9 41266898 41267160 -101004284 - L1MEc LINE L1 -4092 2218 1935 3387 59 32 0 chr9 41267278 41267716 -101003728 - L1PA8 LINE L1 -1 6171 5720 349 280 89 54 chr9 41267776 41267944 -101003500 - L1MEc LINE L1 -4579 1731 1558 1881 220 64 18 chr9 41268027 41268801 -101002643 + L1MA8 LINE L1 2926 7008 -702 6242 67 23 52 chr9 41268810 41270795 -101000649 + SVA Other Other 1 1386 0 3837 140 51 13 chr9 41270806 41271490 -100999954 + L1MA8 LINE L1 6991 7700 -10 824 163 0 15 chr9 41271595 41271730 -100999714 - FLAM_C SINE Alu 0 133 1 271 294 105 0 chr9 41271765 41271908 -100999536 - L1MEc LINE L1 -4935 1375 1218 999 228 55 94 chr9 41271915 41272310 -100999134 - L1MEc LINE L1 -4902 1217 851 1863 147 13 10 chr9 41272310 41272617 -100998827 - AluSx SINE Alu -4 308 1 999 228 55 94 chr9 41272617 41272804 -100998640 - L1MEc LINE L1 -5268 851 658 311 335 50 101 chr9 41273680 41274159 -100997285 + HAL1 LINE L1 814 1265 -1242 744 228 127 101 chr9 41274159 41274694 -100996750 + MLT1H LTR MaLR 1 549 0 311 335 50 101 chr9 41274694 41274739 -100996705 + HAL1 LINE L1 1265 1311 -1196 2668 182 15 35 chr9 41275704 41276306 -100995138 - MER68 LTR ERV1 0 605 1 247 261 29 127 chr9 41276306 41276487 -100994957 + HAL1b LINE L1 450 647 -701 2056 207 17 54 chr9 41276487 41277005 -100994439 - MLT1D LTR MaLR -2 503 5 2513 109 114 5 chr9 41277010 41277396 -100994048 - MSTA LTR MaLR 0 428 1 247 261 29 127 chr9 41277396 41277453 -100993991 + HAL1b LINE L1 651 670 -678 192 319 75 21 chr9 41278895 41278989 -100992455 + MIR SINE MIR 107 205 -57 622 270 47 82 chr9 41279157 41279476 -100991968 - MLT1K LTR MaLR -6 582 275 1658 229 78 37 chr9 41279569 41280058 -100991386 + MLT1J LTR MaLR 1 509 -2 502 199 66 22 chr9 41280392 41280528 -100990916 - MER103 DNA DNA -22 144 3 239 270 95 36 chr9 41281469 41281606 -100989838 + MIR3 SINE MIR 18 162 -46 465 187 99 0 chr9 41282841 41282932 -100988512 - MER103 DNA DNA -63 103 4 246 291 13 0 chr9 41283280 41283359 -100988085 + Charlie8 DNA MER1_type 11 90 -2327 652 255 130 0 chr9 41283714 41283875 -100987569 - MER5A DNA MER1_type 0 189 8 211 269 27 74 chr9 41283886 41284035 -100987409 - MIR SINE MIR -42 220 79 289 280 34 42 chr9 41284855 41284973 -100986471 - MIR SINE MIR -87 175 59 2384 101 49 3 chr9 41285164 41285511 -100985933 + THE1B LTR MaLR 2 364 0 2174 147 99 20 chr9 41285756 41286151 -100985293 - MSTB LTR MaLR 0 426 1 394 232 155 28 chr9 41286230 41286372 -100985072 - MIR SINE MIR -81 127 9 1859 193 28 100 chr9 41286463 41287002 -100984442 - MLT1D LTR MaLR -5 500 1 543 308 140 4 chr9 41287401 41287665 -100983779 + L2 LINE L2 2760 3055 -258 191 185 0 74 chr9 41287976 41288030 -100983414 + MIR SINE MIR 71 120 -88 493 268 179 0 chr9 41288709 41288877 -100982567 - MIR SINE MIR -14 248 51 206 272 74 37 chr9 41288993 41289074 -100982370 - MIR SINE MIR -88 174 91 1365 214 71 117 chr9 41289083 41289705 -100981739 - MLT1E LTR MaLR 0 593 1 498 267 114 62 chr9 41290981 41291574 -100979870 + L2 LINE L2 2450 3098 -174 447 262 89 62 chr9 41292418 41292563 -100978881 + MIR SINE MIR 18 174 -88 1558 174 7 21 chr9 41292563 41292879 -100978565 + AluJo SINE Alu 1 312 0 447 262 89 62 chr9 41292879 41292957 -100978487 + MIR SINE MIR 174 248 -14 199 272 163 55 chr9 41293047 41293249 -100978195 + L2 LINE L2 2054 2277 -1037 641 182 84 0 chr9 41293269 41293412 -100978032 + L1MD2 LINE L1 5884 6038 -321 5911 158 13 12 chr9 41293433 41293817 -100977627 - L1PB1 LINE L1 -1 6150 5768 333 0 0 0 chr9 41293817 41293854 -100977590 + (TG)n Simple_repeat Simple_repeat 2 38 0 5911 158 13 12 chr9 41293854 41295336 -100976108 - L1PB1 LINE L1 -383 5768 4280 2217 175 76 37 chr9 41295349 41295835 -100975609 - MLT1D LTR MaLR 0 505 1 1527 177 15 36 chr9 41295835 41296169 -100975275 + L1MD2 LINE L1 6032 6358 -1 749 101 39 62 chr9 41296176 41296201 -100975243 + FLAM_C SINE Alu 2 26 -286 2864 84 0 16 chr9 41296201 41296580 -100974864 + THE1C LTR MaLR 3 375 0 749 101 39 62 chr9 41296580 41296683 -100974761 + FLAM_C SINE Alu 26 127 -185 324 285 115 0 chr9 41297973 41298103 -100973341 + MIR SINE MIR 80 224 -38 429 291 103 96 chr9 41298316 41298714 -100972730 + L1ME LINE L1 5297 5697 -424 180 0 0 0 chr9 41299055 41299075 -100972369 + (CAG)n Simple_repeat Simple_repeat 2 21 0 366 309 86 6 chr9 41299081 41299243 -100972201 + L3 LINE CR1 1297 1471 -106 1961 167 22 50 chr9 41299336 41299676 -100971768 - MSTA LTR MaLR 0 428 153 423 0 0 0 chr9 41299676 41299723 -100971721 + (CTG)n Simple_repeat Simple_repeat 2 48 0 1961 167 22 50 chr9 41299723 41299872 -100971572 - MSTA LTR MaLR -275 153 1 384 188 0 27 chr9 41299927 41300039 -100971405 + GA-rich Low_complexity Low_complexity 3 111 0 229 291 0 0 chr9 41301163 41301218 -100970226 - MIR SINE MIR -56 206 152 294 192 0 90 chr9 41301349 41301427 -100970017 - MIR SINE MIR -108 154 84 189 0 0 0 chr9 41301898 41301919 -100969525 + (TTCA)n Simple_repeat Simple_repeat 1 21 0 1643 166 58 4 chr9 41303181 41303458 -100967986 + AluJo SINE Alu 1 292 -20 1311 184 129 12 chr9 41304225 41304480 -100966964 - AluJo SINE Alu -16 296 12 520 298 62 11 chr9 41304840 41305018 -100966426 + MIR3 SINE MIR 19 205 -3 496 257 57 7 chr9 41305433 41305573 -100965871 - MIR SINE MIR -79 183 37 184 300 0 71 chr9 41305668 41305738 -100965706 + L2 LINE L2 3207 3271 -1 314 286 130 7 chr9 41306234 41306388 -100965056 - MIR3 SINE MIR -9 199 27 378 61 0 0 chr9 41307277 41307326 -100964118 + (TG)n Simple_repeat Simple_repeat 2 50 0 2082 136 24 0 chr9 41307481 41307820 -100963624 + MER7A DNA MER2_type 2 346 0 1450 180 243 17 chr9 41308497 41308909 -100962535 - MLT1D LTR MaLR 0 505 1 264 320 16 48 chr9 41309064 41309171 -100962273 - MIR SINE MIR -130 132 28 1979 163 59 10 chr9 41309171 41309326 -100962118 + MSTB LTR MaLR 1 147 -279 2308 103 3 0 chr9 41309326 41309626 -100961818 - AluSx SINE Alu -11 301 1 1979 163 59 10 chr9 41309626 41309876 -100961568 + MSTB LTR MaLR 147 426 0 264 320 16 48 chr9 41309876 41309893 -100961551 - MIR SINE MIR -234 28 12 195 216 0 0 chr9 41309915 41309952 -100961492 - MIR SINE MIR -115 147 111 862 240 93 5 chr9 41310074 41310365 -100961079 - L1ME1 LINE L1 0 6184 5859 1171 213 223 16 chr9 41310393 41310769 -100960675 - L1ME1 LINE L1 -4 6162 5709 * 1712 219 11 20 chr9 41310760 41311198 -100960246 - L1ME1 LINE L1 -2354 3792 3359 303 224 233 0 chr9 41311358 41311474 -100959970 + L1ME LINE L1 5683 5825 -296 646 179 57 7 chr9 41311578 41311718 -100959726 - MER45R DNA AcHobo -236 1345 1199 910 210 127 99 chr9 41311864 41312158 -100959286 - MER45R DNA AcHobo -1182 399 90 2282 121 0 0 chr9 41312158 41312455 -100958989 - AluSx SINE Alu -15 297 1 910 210 127 99 chr9 41312455 41312545 -100958899 - MER45R DNA AcHobo -1491 90 4 319 284 10 20 chr9 41312747 41312849 -100958595 + L2 LINE L2 3205 3305 -8 2866 201 19 13 chr9 41313259 41313877 -100957567 - L1MD3 LINE L1 0 7995 7374 469 338 7 0 chr9 41314273 41314412 -100957032 - MIR3 SINE MIR -34 174 35 429 257 9 9 chr9 41314843 41314956 -100956488 + L2 LINE L2 3160 3272 0 573 283 43 5 chr9 41315460 41315644 -100955800 - MIR SINE MIR -45 217 27 190 196 20 0 chr9 41315971 41316022 -100955422 - MIR SINE MIR -64 144 93 575 132 0 66 chr9 41316083 41316204 -100955240 + FLAM_A SINE Alu 29 141 -1 216 296 283 0 chr9 41316506 41316665 -100954779 + MIR SINE MIR 44 247 -15 296 270 20 20 chr9 41316795 41316895 -100954549 + MIR SINE MIR 24 123 -85 690 217 48 53 chr9 41316925 41317114 -100954330 - MIR SINE MIR -46 216 29 251 343 76 17 chr9 41317390 41317562 -100953882 + MIR3 SINE MIR 18 199 -9 1205 242 33 3 chr9 41318064 41318370 -100953074 + L1ME LINE L1 5508 5822 -348 262 246 18 0 chr9 41318496 41318553 -100952891 - Tigger7 DNA MER2_type -2247 240 183 1011 136 63 29 chr9 41318564 41318770 -100952674 - L1MA9 LINE L1 -209 6103 5891 1632 185 60 3 chr9 41318801 41319099 -100952345 + MER44D DNA MER2_type 1 315 -390 653 156 0 0 chr9 41319162 41319271 -100952173 - L1MA9 LINE L1 -422 5890 5782 1306 105 4 31 chr9 41319508 41319736 -100951708 - Tigger7 DNA MER2_type -26 2465 2244 451 333 7 0 chr9 41319768 41319915 -100951529 - L3 LINE CR1 -75 1502 1355 181 318 0 30 chr9 41319918 41319984 -100951460 - L3 LINE CR1 -1 1576 1513 207 293 26 78 chr9 41320115 41320231 -100951213 - MIR3 SINE MIR -14 194 85 383 348 39 21 chr9 41320700 41320933 -100950511 - MIR SINE MIR -6 256 20 249 33 0 0 chr9 41321046 41321076 -100950368 + (TC)n Simple_repeat Simple_repeat 2 31 0 756 184 14 104 chr9 41321083 41321295 -100950149 + MLT1A2 LTR MaLR 181 373 -1 1172 205 172 17 chr9 41321841 41322202 -100949242 - MLT1F LTR MaLR 0 542 126 6602 120 224 25 chr9 41322203 41323616 -100947828 + pTR5 LTR ERV1 743 2436 -2 586 162 7 78 chr9 41323617 41323759 -100947685 - MLT1F LTR MaLR -410 132 1 308 226 0 98 chr9 41323876 41323978 -100947466 - MLT1A2 LTR MaLR -110 264 173 775 254 46 42 chr9 41324009 41324249 -100947195 + MLT1D LTR MaLR 207 447 -58 2135 125 0 3 chr9 41324272 41324568 -100946876 - AluSx SINE Alu -12 300 6 234 210 48 0 chr9 41324577 41324639 -100946805 + MLT1D LTR MaLR 561 625 -1 259 268 99 0 chr9 41324821 41324892 -100946552 + MIR SINE MIR 34 111 -151 394 271 59 25 chr9 41324896 41325014 -100946430 - MER5B DNA MER1_type -7 171 50 213 329 24 35 chr9 41325035 41325120 -100946324 + MER5B DNA MER1_type 93 176 -2 266 308 56 9 chr9 41325124 41325231 -100946213 + MIR SINE MIR 107 218 -44 240 204 41 0 chr9 41325869 41325918 -100945526 - MER69 DNA AcHobo -3 2523 2473 403 270 46 20 chr9 41327505 41327657 -100943787 + MIR3 SINE MIR 50 205 -3 2020 120 49 0 chr9 41327709 41327993 -100943451 + AluSx SINE Alu 1 298 -14 1767 108 0 0 chr9 41328495 41328718 -100942726 + AluSx SINE Alu 1 223 -89 213 312 181 14 chr9 41328824 41328962 -100942482 + MIR SINE MIR 9 169 -93 694 288 68 51 chr9 41329052 41329465 -100941979 + MLT1J LTR MaLR 86 505 -6 2757 213 11 37 chr9 41329536 41330185 -100941259 + LTR27 LTR ERV1 1 634 -2 467 265 86 110 chr9 41330335 41330709 -100940735 + L2 LINE L2 2888 3252 -20 329 221 145 15 chr9 41331235 41331366 -100940078 - MIR3 SINE MIR -60 148 1 188 286 12 119 chr9 41331693 41331777 -100939667 + L2 LINE L2 2676 2750 -564 452 188 32 38 chr9 41331785 41331922 -100939522 + MLT1J LTR MaLR 292 476 -21 245 286 62 107 chr9 41331922 41332100 -100939344 - MER5B DNA MER1_type -8 170 1 757 167 0 8 chr9 41332242 41332368 -100939076 + FLAM_C SINE Alu 1 125 -8 1056 195 91 4 chr9 41332390 41332752 -100938692 - MLT1D LTR MaLR -83 422 1 666 301 21 46 chr9 41332784 41333066 -100938378 - Charlie8 DNA MER1_type -2141 276 2 254 308 88 38 chr9 41333546 41333705 -100937739 - LTR33A LTR ERVL -2 521 355 323 231 8 103 chr9 41333845 41333962 -100937482 + MIR SINE MIR 41 146 -62 2010 132 4 0 chr9 41334886 41335196 -100936248 + AluSx SINE Alu 1 311 0 218 54 0 27 chr9 41335290 41335327 -100936117 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 210 261 0 0 chr9 41335328 41335374 -100936070 - MER5B DNA MER1_type -131 47 2 488 272 193 17 chr9 41335402 41335703 -100935741 - L3 LINE CR1 -93 1484 1131 260 246 18 0 chr9 41336496 41336553 -100934891 - LTR67 LTR ERVL -386 171 114 25 0 0 0 chr9 41336823 41336848 -100934596 + AT_rich Low_complexity Low_complexity 1 25 0 200 256 70 12 chr9 41338073 41338159 -100933285 + MIR SINE MIR 63 153 -109 3805 56 24 0 chr9 41338559 41339060 -100932384 + LTR10D LTR ERV1 1 513 0 1613 171 27 20 chr9 41339098 41339390 -100932054 - AluJo SINE Alu -14 298 5 250 203 29 58 chr9 41339870 41339939 -100931505 - MIR3 SINE MIR -41 167 101 811 253 67 29 chr9 41340049 41340365 -100931079 - L2 LINE L2 -6 3307 2980 198 311 0 0 chr9 41340374 41340435 -100931009 + MIR3 SINE MIR 142 202 -6 1676 179 97 30 chr9 41342709 41343111 -100928333 + L1MB7 LINE L1 5734 6162 -22 2499 99 0 0 chr9 41343111 41343423 -100928021 - AluSx SINE Alu 0 312 1 239 333 48 0 chr9 41343507 41343591 -100927853 - L3 LINE CR1 -7 1570 1483 1458 130 0 52 chr9 41343993 41344223 -100927221 - AluJb SINE Alu -94 218 1 229 272 25 49 chr9 41344606 41344687 -100926757 + L3 LINE CR1 1492 1570 -7 282 116 0 0 chr9 41344764 41344807 -100926637 + (TTCA)n Simple_repeat Simple_repeat 3 45 0 1787 178 4 0 chr9 41344807 41345088 -100926356 - AluJb SINE Alu -30 282 1 238 272 76 82 chr9 41345227 41345385 -100926059 - MIR SINE MIR -5 257 101 197 246 92 0 chr9 41345743 41345808 -100925636 - L2 LINE L2 -63 3209 3139 1196 122 116 0 chr9 41345917 41346098 -100925346 - AluSg/x SINE Alu -9 303 102 1894 164 0 16 chr9 41346499 41346809 -100924635 - AluJo SINE Alu -7 305 1 551 294 65 54 chr9 41347166 41347442 -100924002 - L2 LINE L2 0 3313 3035 * 669 201 81 62 chr9 41347441 41347714 -100923730 - L2 LINE L2 -384 2930 2653 299 275 106 18 chr9 41347748 41347966 -100923478 - L2 LINE L2 -1230 2084 1848 530 317 24 6 chr9 41348180 41348347 -100923097 - MLT1J2 LTR MaLR -14 436 267 2460 76 3 7 chr9 41348365 41348669 -100922775 - AluSq SINE Alu -10 303 1 251 297 120 88 chr9 41348830 41349022 -100922422 - MLT1I LTR MaLR -147 262 65 209 237 189 68 chr9 41350657 41350847 -100920597 + L2 LINE L2 2847 3059 -213 528 272 20 20 chr9 41352094 41352241 -100919203 - MIR3 SINE MIR -46 162 16 304 244 140 46 chr9 41352456 41352674 -100918770 + MIR3 SINE MIR 2 242 -20 1879 141 0 56 chr9 41352940 41353260 -100918184 + AluJo SINE Alu 1 302 -10 462 212 27 62 chr9 41353498 41353644 -100917800 - MIR3 SINE MIR -9 199 59 445 335 97 11 chr9 41354171 41354347 -100917097 + L3 LINE CR1 1298 1488 -89 196 277 36 36 chr9 41354774 41354857 -100916587 + L2 LINE L2 3229 3311 -2 2557 63 0 3 chr9 41355009 41355309 -100916135 + AluY SINE Alu 1 299 -12 427 264 54 24 chr9 41355398 41355565 -100915879 + MLT1I LTR MaLR 225 396 -13 340 311 8 25 chr9 41357106 41357225 -100914219 - MIR3 SINE MIR 0 208 92 1562 190 65 49 chr9 41357374 41357864 -100913580 - MLT1D LTR MaLR 0 505 8 279 0 0 0 chr9 41358842 41358873 -100912571 + (CA)n Simple_repeat Simple_repeat 1 31 0 321 251 106 65 chr9 41359145 41359344 -100912100 - MIR3 SINE MIR 0 208 2 652 277 57 0 chr9 41360441 41360618 -100910826 - L3 LINE CR1 -93 1484 1298 189 0 0 0 chr9 41361303 41361324 -100910120 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 472 214 29 71 chr9 41361327 41361467 -100909977 - L1ME1 LINE L1 -18 6148 6015 1803 160 10 33 chr9 41361485 41361791 -100909653 - AluJo SINE Alu -13 299 1 27 73 0 0 chr9 41361794 41361849 -100909595 + AT_rich Low_complexity Low_complexity 1 55 0 252 265 303 32 chr9 41361908 41362093 -100909351 - MIR SINE MIR -21 241 7 440 238 230 0 chr9 41362140 41362266 -100909178 - MIR SINE MIR -74 188 34 2511 150 113 35 chr9 41362351 41362872 -100908572 - MER68 LTR ERV1 0 562 1 207 187 11 143 chr9 41363110 41363201 -100908243 + MIR SINE MIR 112 190 -72 375 78 0 0 chr9 41364650 41364701 -100906743 + (TCC)n Simple_repeat Simple_repeat 1 51 0 1815 143 4 4 chr9 41364701 41364966 -100906478 - AluJo SINE Alu -14 298 34 2264 74 3 18 chr9 41365360 41365666 -100905778 + AluY SINE Alu 1 302 0 201 318 76 0 chr9 41365704 41365770 -100905674 + MIR SINE MIR 76 146 -116 1799 164 31 3 chr9 41365821 41366114 -100905330 + AluJo SINE Alu 3 303 -9 332 316 105 7 chr9 41366960 41367112 -100904332 + MIR3 SINE MIR 13 179 -29 367 259 146 32 chr9 41368016 41368174 -100903270 + MER69A DNA AcHobo 1 176 -1 208 299 0 35 chr9 41368328 41368415 -100903029 + CT-rich Low_complexity Low_complexity 2 85 0 23 0 0 0 chr9 41368981 41369004 -100902440 + GC_rich Low_complexity Low_complexity 1 23 0 288 137 0 0 chr9 41369167 41369218 -100902226 + (CAG)n Simple_repeat Simple_repeat 1 51 0 250 255 105 33 chr9 41369400 41369553 -100901891 - MIR3 SINE MIR -21 187 24 21 0 0 0 chr9 41369591 41369612 -100901832 + AT_rich Low_complexity Low_complexity 1 21 0 243 188 16 31 chr9 41369857 41369921 -100901523 - L1MC4a LINE L1 -1875 5933 5871 273 263 66 40 chr9 41369929 41370081 -100901363 + MER104 DNA Tc2 25 180 0 225 222 0 19 chr9 41370150 41370204 -100901240 - L1M3 LINE L1 -444 5736 5684 489 250 77 65 chr9 41370862 41371214 -100900230 + L1ME4a LINE L1 5597 5952 -169 24 0 0 0 chr9 41371260 41371284 -100900160 + AT_rich Low_complexity Low_complexity 1 24 0 995 154 6 44 chr9 41371294 41371476 -100899968 - AluJo SINE Alu -40 272 98 303 272 11 22 chr9 41371582 41371674 -100899770 + L3 LINE CR1 1378 1468 -109 207 333 0 0 chr9 41372727 41372790 -100898654 + L3 LINE CR1 1307 1369 -208 269 289 76 37 chr9 41372872 41373169 -100898275 + L1MEc LINE L1 73 254 -5951 657 229 64 5 chr9 41373321 41373509 -100897935 + LTR50 LTR ERVL 441 639 -156 1896 166 0 10 chr9 41373534 41373836 -100897608 - AluJb SINE Alu -13 299 1 2385 112 0 0 chr9 41373841 41374153 -100897291 - AluSx SINE Alu 0 312 1 1258 197 69 31 chr9 41374184 41374474 -100896970 + AluJo SINE Alu 1 301 -11 1863 323 39 32 chr9 41374766 41376041 -100895403 + ERVL LTR ERVL 585 1941 -3823 273 274 95 0 chr9 41376107 41376191 -100895253 + ERVL LTR ERVL 2094 2185 -3469 2947 154 99 13 chr9 41376456 41377013 -100894431 - MER6A DNA MER2_type 0 605 1 278 408 113 10 chr9 41377135 41377552 -100893892 - L2 LINE L2 -5 3267 2808 815 189 0 0 chr9 41377733 41377865 -100893579 - FRAM SINE Alu -44 132 1 345 255 28 28 chr9 41378198 41378304 -100893140 - MIR SINE MIR -84 124 19 248 200 57 57 chr9 41378578 41378648 -100892796 + L2 LINE L2 3203 3272 0 4219 96 8 94 chr9 41378944 41379670 -100891774 - MER4A LTR ERV1 0 664 1 500 293 158 23 chr9 41379969 41380228 -100891216 + L3 LINE CR1 583 876 -701 189 161 0 0 chr9 41380933 41380964 -100890480 + L2 LINE L2 3262 3292 -21 * 672 284 85 20 chr9 41380959 41381160 -100890284 - MIR SINE MIR 0 262 49 719 163 0 16 chr9 41381483 41381606 -100889838 + MLT1B LTR MaLR 1 121 -269 781 279 109 23 chr9 41381678 41382025 -100889419 - MLT1J2 LTR MaLR -12 438 62 1030 212 33 4 chr9 41382209 41382454 -100888990 - MER68 LTR ERV1 -310 252 1 207 187 11 143 chr9 41382692 41382783 -100888661 + MIR SINE MIR 112 190 -72 2179 73 4 18 chr9 41384261 41384536 -100886908 - AluY SINE Alu -40 271 1 1832 190 0 13 chr9 41384958 41385268 -100886176 - AluJb SINE Alu -4 308 3 243 0 0 0 chr9 41385280 41385307 -100886137 + (T)n Simple_repeat Simple_repeat 1 27 0 2681 147 95 2 chr9 41385670 41386166 -100885278 - MER34 LTR ERV1 0 542 1 180 327 55 27 chr9 41386373 41386483 -100884961 + L2 LINE L2 3143 3255 -17 2204 143 68 9 chr9 41437026 41437465 -100833979 + L1P LINE L1 4781 5245 -901 715 313 62 6 chr9 41437498 41437834 -100833610 - HERVL-D LTR ERVL -5296 358 4 1055 167 34 38 chr9 41437885 41438111 -100833333 - MLT2D LTR ERVL -151 263 39 257 114 91 0 chr9 41438111 41438155 -100833289 - MLT2D LTR ERVL 0 414 367 213 254 17 0 chr9 41438156 41438215 -100833229 + (TATATG)n Simple_repeat Simple_repeat 5 64 0 1022 276 68 56 chr9 41438271 41438756 -100832688 - MLT2B3 LTR ERVL -63 491 1 401 296 6 6 chr9 41438800 41438979 -100832465 - L1MEc LINE L1 -3595 2620 2442 929 270 58 118 chr9 41439016 41440233 -100831211 - L1MEc LINE L1 -4140 2256 1078 2573 59 0 0 chr9 41440284 41440588 -100830856 - AluY SINE Alu -7 304 1 21 0 0 0 chr9 41440598 41440619 -100830825 + AT_rich Low_complexity Low_complexity 1 21 0 382 299 125 30 chr9 41440622 41440981 -100830463 - L1MEc LINE L1 -5247 958 623 413 206 10 31 chr9 41441180 41441277 -100830167 + MER21B LTR ERV1 1 95 -768 1430 236 50 43 chr9 41441317 41441979 -100829465 + MER21B LTR ERV1 98 812 -51 276 232 12 24 chr9 41442178 41442260 -100829184 - L1MEc LINE L1 -6203 193 113 1289 249 40 38 chr9 41443865 41444045 -100827399 - L1 LINE L1 -3202 2944 2766 2282 100 0 7 chr9 41444045 41444344 -100827100 - AluSg SINE Alu -13 297 1 1289 249 40 38 chr9 41444344 41444632 -100826812 - L1 LINE L1 -3380 2766 2475 1084 299 88 16 chr9 41444869 41445707 -100825737 + L2 LINE L2 2416 3311 -2 189 0 0 0 chr9 41445893 41445914 -100825530 + (TAAAA)n Simple_repeat Simple_repeat 3 23 0 2037 230 33 27 chr9 41446290 41447032 -100824412 + L1M3d LINE L1 771 1786 -4517 1957 230 74 39 chr9 41447177 41448390 -100823054 + L1ME LINE L1 4542 5794 -370 405 154 0 0 chr9 41448410 41448475 -100822969 - MLT1E2 LTR MaLR -436 190 126 239 291 75 88 chr9 41448491 41448663 -100822781 + L2 LINE L2 2962 3130 -142 369 0 0 0 chr9 41448663 41448704 -100822740 + (TG)n Simple_repeat Simple_repeat 2 42 0 239 291 75 88 chr9 41448704 41448826 -100822618 + L2 LINE L2 3130 3252 -20 595 260 131 11 chr9 41448881 41449242 -100822202 - L2 LINE L2 -269 3044 2639 1422 197 16 86 chr9 41449291 41449403 -100822041 - L1MC5 LINE L1 -883 7078 6960 1812 158 14 7 chr9 41449403 41449694 -100821750 - AluJo SINE Alu -19 293 1 1422 197 16 86 chr9 41449694 41450079 -100821365 - L1MC5 LINE L1 -1001 6960 6616 * 5013 247 60 25 chr9 41450077 41452296 -100819148 - L1MD1 LINE L1 -8 6234 3916 1886 124 41 7 chr9 41452296 41452587 -100818857 - AluSx SINE Alu -10 302 2 5013 247 60 25 chr9 41452587 41452891 -100818553 - L1MD1 LINE L1 -2326 3916 3624 378 0 0 0 chr9 41453283 41453325 -100818119 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 474 263 22 7 chr9 41453325 41453462 -100817982 - L1MD1 LINE L1 -2512 3634 3496 27 29 0 0 chr9 41453722 41453756 -100817688 + AT_rich Low_complexity Low_complexity 1 34 0 181 83 56 0 chr9 41453838 41453874 -100817570 + GA-rich Low_complexity Low_complexity 5 42 0 34 42 0 0 chr9 41453940 41453988 -100817456 + AT_rich Low_complexity Low_complexity 1 48 0 45 19 0 0 chr9 41454040 41454092 -100817352 + AT_rich Low_complexity Low_complexity 1 52 0 29 60 0 0 chr9 41454155 41454205 -100817239 + AT_rich Low_complexity Low_complexity 1 50 0 1241 274 89 118 chr9 41454369 41454944 -100816500 - L2 LINE L2 -342 2972 2382 1693 170 32 0 chr9 41454944 41455226 -100816218 + AluJb SINE Alu 1 291 -21 1241 274 89 118 chr9 41455226 41455396 -100816048 - L2 LINE L2 -932 2382 2209 629 211 0 9 chr9 41455396 41455505 -100815939 + FLAM_C SINE Alu 2 109 -34 1241 274 89 118 chr9 41455505 41455909 -100815535 - L2 LINE L2 -1105 2209 1750 210 146 24 0 chr9 41455979 41456020 -100815424 - MIR SINE MIR -110 152 111 191 258 161 0 chr9 41456161 41456223 -100815221 - MIR SINE MIR -139 123 52 539 337 39 5 chr9 41457028 41457233 -100814211 - MIR SINE MIR -10 252 41 184 220 0 40 chr9 41457768 41457818 -100813626 - MIR SINE MIR -114 148 101 821 172 0 0 chr9 41458040 41458168 -100813276 + AluJb SINE Alu 141 268 -44 200 299 37 19 chr9 41458197 41458304 -100813140 - L2 LINE L2 -177 3095 2987 1845 181 0 13 chr9 41458514 41458828 -100812616 - AluJb SINE Alu 0 312 3 306 0 0 0 chr9 41458840 41458874 -100812570 + (T)n Simple_repeat Simple_repeat 1 34 0 2885 145 95 2 chr9 41459238 41459734 -100811710 - MER34 LTR ERV1 0 542 1 200 333 47 31 chr9 41459934 41460063 -100811381 + L2 LINE L2 3136 3266 -6 307 176 0 40 chr9 41460798 41460893 -100810551 + L1MC/D LINE L1 5374 5464 -705 * 4482 217 55 57 chr9 41460881 41463016 -100808428 - L1ME1 LINE L1 -38 6522 4438 1931 153 7 10 chr9 41463138 41463809 -100807635 + AluJb SINE Alu 6 675 0 252 191 16 16 chr9 41463809 41463872 -100807572 - L1ME1 LINE L1 -4948 1592 1530 898 176 80 0 chr9 41463927 41464114 -100807330 - L1MB4 LINE L1 -2 6178 5977 2458 106 11 34 chr9 41464118 41464497 -100806947 - THE1C LTR MaLR -5 370 1 3452 170 52 13 chr9 41464497 41464982 -100806462 - L1MB4 LINE L1 -197 5983 5450 258 32 0 0 chr9 41464982 41465013 -100806431 + (TC)n Simple_repeat Simple_repeat 2 32 0 3452 170 52 13 chr9 41465013 41465381 -100806063 - L1MB4 LINE L1 -730 5450 5098 1684 222 95 21 chr9 41465377 41465859 -100805585 - L1ME1 LINE L1 -5826 895 378 * 930 156 7 0 chr9 41466199 41466340 -100805104 - AluSg SINE Alu -17 293 152 365 117 54 18 chr9 41466477 41466588 -100804856 + (TCTA)n Simple_repeat Simple_repeat 2 116 0 252 339 69 62 chr9 41467154 41467428 -100804016 + L2 LINE L2 2977 3252 -20 302 287 98 42 chr9 41467619 41467762 -100803682 + L2 LINE L2 3122 3272 0 228 114 0 45 chr9 41468163 41468207 -100803237 - MIR SINE MIR -82 126 85 31 26 0 0 chr9 41468325 41468363 -100803081 + AT_rich Low_complexity Low_complexity 1 38 0 1662 169 8 0 chr9 41468363 41468629 -100802815 - L1PB3 LINE L1 -2 6152 5885 189 206 324 0 chr9 41468862 41468930 -100802514 - L2 LINE L2 0 3272 3183 233 316 13 0 chr9 41469059 41469138 -100802306 + L2 LINE L2 3188 3267 -5 278 214 168 15 chr9 41469591 41469722 -100801722 + MIR3 SINE MIR 36 186 -22 276 324 20 20 chr9 41470040 41470142 -100801302 + MIR SINE MIR 51 152 -56 794 139 15 0 chr9 41470240 41470377 -100801067 - L1 LINE L1 -1333 4813 4675 351 274 131 48 chr9 41470380 41470632 -100800812 + L2 LINE L2 2489 2761 -553 372 359 24 12 chr9 41470765 41470932 -100800512 + L2 LINE L2 2924 3092 -180 640 315 89 47 chr9 41470947 41471500 -100799944 - L1MEd LINE L1 -5262 1372 797 505 210 35 56 chr9 41471522 41471665 -100799779 - L1MEd LINE L1 -5920 622 483 2182 98 3 7 chr9 41471846 41472155 -100799289 + AluSx SINE Alu 1 308 0 22 0 0 0 chr9 41472218 41472240 -100799204 + AT_rich Low_complexity Low_complexity 1 22 0 693 248 32 50 chr9 41473440 41473722 -100797722 + LTR4 LTR ERV1 318 594 -2 972 146 0 7 chr9 41473722 41473873 -100797571 - AluSg SINE Alu -160 150 1 372 114 63 0 chr9 41474182 41474261 -100797183 + CT-rich Low_complexity Low_complexity 2 85 0 2104 134 20 0 chr9 41474287 41474593 -100796851 - AluSx SINE Alu 0 312 1 1511 176 3 30 chr9 41475011 41475306 -100796138 - AluJo SINE Alu -20 292 6 828 248 35 5 chr9 41475349 41475547 -100795897 + MIR SINE MIR 35 238 -24 230 329 47 0 chr9 41475781 41475866 -100795578 + MER91C DNA MER1_type 35 123 -17 2406 205 13 27 chr9 41476631 41477158 -100794286 + L1MB8 LINE L1 5653 6172 -6 21 0 0 0 chr9 41477689 41477710 -100793734 + AT_rich Low_complexity Low_complexity 1 21 0 364 298 99 0 chr9 41478227 41478368 -100793076 + L2 LINE L2 2722 2876 -438 2020 149 7 3 chr9 41479495 41479804 -100791640 + AluSq SINE Alu 1 310 -3 3390 127 25 0 chr9 41480198 41480687 -100790757 - L1PA10 LINE L1 -11 6157 5657 2069 202 30 91 chr9 41480750 41481408 -100790036 - MER4D LTR ERV1 -3 900 283 745 178 19 38 chr9 41481522 41481679 -100789765 - MER4E LTR ERV1 -600 179 26 1151 224 72 9 chr9 41481913 41482234 -100789210 - L1MB8 LINE L1 -5 6173 5833 2110 154 63 14 chr9 41482234 41482663 -100788781 - MER61C LTR ERV1 0 434 1 2695 190 42 33 chr9 41482663 41482802 -100788642 - L1MB8 LINE L1 -342 5836 5700 2291 85 0 20 chr9 41482802 41483096 -100788348 + AluSg SINE Alu 1 288 -22 2695 190 42 33 chr9 41483096 41484012 -100787432 - L1MB8 LINE L1 -478 5700 4766 739 285 114 36 chr9 41485347 41485720 -100785724 - MLT1G1 LTR MaLR -34 561 45 1256 164 57 36 chr9 41485756 41486036 -100785408 - L1MA5 LINE L1 -6 6294 6009 1135 232 27 8 chr9 41486109 41486368 -100785076 - AluJo SINE Alu -48 264 1 3083 203 58 44 chr9 41486369 41487480 -100783964 - L1MA5 LINE L1 -354 5946 4808 1505 193 7 27 chr9 41487593 41487894 -100783550 - AluJo SINE Alu -16 296 2 442 176 108 10 chr9 41488295 41488397 -100783047 + MSTB LTR MaLR 261 372 -54 564 189 155 11 chr9 41488415 41488569 -100782875 - MST-int LTR MaLR -963 661 463 * 6526 214 50 25 chr9 41488564 41490148 -100781296 + MSTB-int LTR MaLR 28 1651 0 425 232 10 0 chr9 41490148 41490247 -100781197 + MSTA LTR MaLR 1 100 -328 336 203 41 106 chr9 41490269 41490392 -100781052 + MSTA LTR MaLR 57 171 -257 1027 234 53 40 chr9 41490401 41490704 -100780740 + MSTA-int LTR MaLR 1345 1651 0 429 204 27 1 chr9 41490708 41490809 -100780635 + MSTA LTR MaLR 5 95 -333 245 163 23 0 chr9 41490911 41490954 -100780490 + THE1-int LTR MaLR 924 967 -613 * 690 226 201 21 chr9 41490945 41491184 -100780260 - THE1-int LTR MaLR -392 1188 907 980 233 87 7 chr9 41491188 41491476 -100779968 + MSTA LTR MaLR 66 376 -52 479 226 161 7 chr9 41491510 41491647 -100779797 - MST-int LTR MaLR -990 661 504 * 6277 217 56 30 chr9 41491642 41493225 -100778219 + MSTA-int LTR MaLR 28 1651 0 383 258 10 0 chr9 41493227 41493324 -100778120 + MSTA LTR MaLR 3 100 -328 344 262 107 0 chr9 41493369 41493472 -100777972 + MSTA LTR MaLR 58 171 -257 1106 257 0 35 chr9 41493484 41493799 -100777645 + MSTA-int LTR MaLR 1347 1650 -1 435 198 10 0 chr9 41493800 41493896 -100777548 + MSTA LTR MaLR 1 97 -331 2196 122 0 0 chr9 41494040 41494336 -100777108 + AluSc SINE Alu 1 296 -13 563 225 23 0 chr9 41494338 41494467 -100776977 - L1MA10 LINE L1 -4 6330 6199 730 252 83 42 chr9 41494475 41495044 -100776400 + L1M4 LINE L1 3767 4311 -1835 2409 64 3 0 chr9 41495044 41495339 -100776105 + AluY SINE Alu 1 296 -15 730 252 83 42 chr9 41495339 41495472 -100775972 + L1M4 LINE L1 4311 4437 -1709 2302 81 0 0 chr9 41495472 41495782 -100775662 + AluSq SINE Alu 5 314 0 730 252 83 42 chr9 41495782 41496246 -100775198 + L1M4 LINE L1 4437 5067 -1079 1530 205 179 3 chr9 41496246 41496587 -100774857 - MER57A LTR ERV1 0 403 3 730 252 83 42 chr9 41496587 41496727 -100774717 + L1M4 LINE L1 5067 5200 -946 835 175 7 0 chr9 41496729 41496866 -100774578 + FLAM_C SINE Alu 1 138 -5 195 129 0 0 chr9 41496931 41496962 -100774482 + (TA)n Simple_repeat Simple_repeat 2 32 0 207 0 0 0 chr9 41496966 41496989 -100774455 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2207 95 0 11 chr9 41496992 41497277 -100774167 - AluSp SINE Alu -31 282 1 924 185 58 0 chr9 41497345 41497534 -100773910 + Charlie1 DNA MER1_type 875 1074 -1687 367 179 0 0 chr9 41497552 41497619 -100773825 - L1MA10 LINE L1 -3 6331 6265 1643 216 54 14 chr9 41498467 41498837 -100772607 + MSTA LTR MaLR 1 385 -43 1495 121 26 0 chr9 41498848 41499080 -100772364 + MSTA-int LTR MaLR 13 250 -1401 1217 184 37 12 chr9 41499077 41499322 -100772122 + MSTA-int LTR MaLR 1401 1651 0 * 1533 213 29 35 chr9 41499322 41499697 -100771747 + MSTA LTR MaLR 1 373 -55 460 238 154 0 chr9 41499725 41499868 -100771576 - MST-int LTR MaLR -981 670 506 455 228 0 0 chr9 41499866 41499967 -100771477 + MSTA-int LTR MaLR 29 129 -1522 * 328 311 77 22 chr9 41501975 41502158 -100769286 + MIR SINE MIR 37 229 -33 1501 204 5 94 chr9 41502368 41502741 -100768703 - MLT1A1 LTR MaLR 0 365 26 24 53 0 0 chr9 41503047 41503085 -100768359 + AT_rich Low_complexity Low_complexity 1 38 0 2252 106 7 7 chr9 41503139 41503441 -100768003 - AluSx SINE Alu -10 302 1 23 0 0 0 chr9 41503670 41503693 -100767751 + AT_rich Low_complexity Low_complexity 1 23 0 2303 114 0 3 chr9 41504257 41504564 -100766880 - AluSx SINE Alu -6 306 1 286 335 50 16 chr9 41505359 41505541 -100765903 - MIR SINE MIR -35 227 40 313 261 246 14 chr9 41505571 41505786 -100765658 - L1MDa LINE L1 -4708 1832 1568 1706 147 82 41 chr9 41506194 41506631 -100764813 + SN5 Other centromeric 1 455 0 183 204 0 0 chr9 41506876 41506925 -100764519 + (TG)n Simple_repeat Simple_repeat 2 50 0 253 231 13 26 chr9 41507423 41507501 -100763943 + HSAT5 Satellite Satellite 9 85 -1 286 211 0 28 chr9 41507690 41507761 -100763683 + HSAT5 Satellite Satellite 17 85 -1 290 279 0 12 chr9 41507802 41507888 -100763556 + HSAT5 Satellite Satellite 1 85 -1 650 220 47 0 chr9 41508437 41508587 -100762857 + L1MC4 LINE L1 6847 7003 -1039 890 197 41 9 chr9 41508630 41508848 -100762596 + L1MC4 LINE L1 7137 7361 -681 192 300 0 12 chr9 41509721 41509801 -100761643 - L2 LINE L2 -227 3045 2967 22 35 0 0 chr9 41510367 41510396 -100761048 + AT_rich Low_complexity Low_complexity 1 29 0 2319 107 0 0 chr9 41510671 41510969 -100760475 + AluSc SINE Alu 1 298 -11 23 68 0 0 chr9 41511059 41511103 -100760341 + AT_rich Low_complexity Low_complexity 1 44 0 267 288 12 0 chr9 41511136 41511216 -100760228 - L1PA16 LINE L1 -1 6165 6085 730 251 53 21 chr9 41511327 41511570 -100759874 + L1ME2 LINE L1 5811 6061 -103 1647 231 53 42 chr9 41511656 41512277 -100759167 + L1ME LINE L1 5197 5822 -340 218 185 0 77 chr9 41512625 41512690 -100758754 + L2 LINE L2 3158 3217 -96 2128 106 40 7 chr9 41512694 41512995 -100758449 - AluSq SINE Alu -1 312 2 249 324 131 25 chr9 41513323 41513567 -100757877 - L2 LINE L2 -36 3277 3008 1264 238 41 54 chr9 41513777 41514239 -100757205 + L1MDb LINE L1 822 1277 -5132 371 292 138 17 chr9 41514587 41514818 -100756626 - MER102a DNA MER1_type -1 329 71 198 0 0 0 chr9 41515704 41515726 -100755718 + (T)n Simple_repeat Simple_repeat 1 22 0 657 71 0 0 chr9 41515764 41515848 -100755596 - AluY SINE Alu -184 127 44 584 172 0 0 chr9 41515840 41515933 -100755511 - FLAM_A SINE Alu -49 93 1 * 206 293 42 54 chr9 41515946 41516077 -100755367 + MER5A DNA MER1_type 46 189 0 478 294 128 11 chr9 41517757 41517944 -100753500 + MIR SINE MIR 46 254 -8 1519 203 3 10 chr9 41517946 41518241 -100753203 - AluJo SINE Alu -19 293 1 22 70 0 0 chr9 41518246 41518289 -100753155 + AT_rich Low_complexity Low_complexity 1 43 0 2095 122 0 0 chr9 41518646 41518960 -100752484 + AluSg SINE Alu 1 310 0 1819 102 33 0 chr9 41519528 41519773 -100751671 - AluSc SINE Alu -56 253 1 1958 146 0 0 chr9 41519774 41520080 -100751364 - AluSg SINE Alu 0 306 1 485 175 319 6 chr9 41521351 41521517 -100749927 + MER20 DNA MER1_type 2 219 0 22 0 0 0 chr9 41521591 41521613 -100749831 + AT_rich Low_complexity Low_complexity 1 22 0 1125 148 0 22 chr9 41521613 41521796 -100749648 - AluJb SINE Alu -7 305 127 306 0 0 0 chr9 41522175 41522209 -100749235 + (TA)n Simple_repeat Simple_repeat 2 35 0 1935 142 0 10 chr9 41522209 41522497 -100748947 - AluSx SINE Alu -27 285 1 953 176 113 57 chr9 41522846 41523141 -100748303 + MLT1E1 LTR MaLR 258 654 0 565 197 17 0 chr9 41523675 41523792 -100747652 + L1MB4 LINE L1 6047 6165 -15 5107 215 72 43 chr9 41523984 41525377 -100746067 + HERVL68 LTR ERVL 347 1780 -1257 1562 214 69 31 chr9 41525428 41525443 -100746001 + HERVL68 LTR ERVL 1941 1954 -1083 2341 71 14 14 chr9 41525443 41525740 -100745704 - AluY SINE Alu -14 297 1 1562 214 69 31 chr9 41525740 41526144 -100745300 + HERVL68 LTR ERVL 1954 2376 -661 778 221 69 22 chr9 41526144 41526375 -100745069 - MER31B LTR ERV1 0 466 225 289 194 16 0 chr9 41528315 41528377 -100743067 + MIR SINE MIR 111 173 -89 329 207 58 0 chr9 41528755 41528842 -100742602 - MIR SINE MIR -111 151 60 369 202 144 117 chr9 41529197 41529385 -100742059 - MER31B LTR ERV1 -244 222 30 42 0 0 0 chr9 41530253 41530295 -100741149 + AT_rich Low_complexity Low_complexity 1 42 0 535 212 42 17 chr9 41530472 41530590 -100740854 + FLAM_A SINE Alu 1 121 -21 2391 92 3 0 chr9 41533458 41533752 -100737692 - AluSp SINE Alu -16 297 3 844 199 0 161 chr9 41535591 41535852 -100735592 + MER58A DNA MER1_type 4 222 -2 587 307 136 37 chr9 41535937 41536153 -100735291 + MLT1L LTR MaLR 5 198 -417 2062 143 0 0 chr9 41536153 41536447 -100734997 + AluSc SINE Alu 1 294 -15 587 307 136 37 chr9 41536447 41536634 -100734810 + MLT1L LTR MaLR 198 448 -167 272 217 67 0 chr9 41536679 41536739 -100734705 + MLT1L LTR MaLR 546 609 -6 2860 213 121 39 chr9 41537558 41538291 -100733153 + Charlie1 DNA MER1_type 1605 2435 -326 1962 123 7 7 chr9 41538291 41538576 -100732868 + AluSx SINE Alu 1 285 -27 2860 213 121 39 chr9 41538576 41538792 -100732652 + Charlie1 DNA MER1_type 2435 2632 -129 320 226 177 0 chr9 41538793 41538917 -100732527 + L1M2 LINE L1 5296 5441 -856 1635 196 45 32 chr9 41538917 41539321 -100732123 - LTR52 LTR ERVL -3 418 10 485 263 103 5 chr9 41539328 41539522 -100731922 + L1ME LINE L1 5435 5647 -517 1081 222 13 4 chr9 41539647 41539877 -100731567 + Tigger2 DNA MER2_type 2487 2718 0 41 21 0 0 chr9 41540142 41540190 -100731254 + AT_rich Low_complexity Low_complexity 1 48 0 2313 104 0 0 chr9 41540224 41540521 -100730923 - AluSx SINE Alu -15 297 1 252 143 82 0 chr9 41541684 41541782 -100729662 + (TA)n Simple_repeat Simple_repeat 1 106 0 209 91 15 45 chr9 41541790 41541856 -100729588 + (TAAAAA)n Simple_repeat Simple_repeat 6 69 0 242 123 0 74 chr9 41541856 41541937 -100729507 + (TATAA)n Simple_repeat Simple_repeat 1 75 0 760 116 0 9 chr9 41542065 41542177 -100729267 - AluSg/x SINE Alu -30 280 170 1578 173 75 16 chr9 41542180 41542498 -100728946 - L1MA9 LINE L1 -157 6155 5819 776 111 0 9 chr9 41542498 41542606 -100728838 + AluSg/x SINE Alu 193 299 -11 1898 149 29 16 chr9 41542631 41542939 -100728505 + AluSx SINE Alu 1 312 0 388 281 18 9 chr9 41543121 41543235 -100728209 + MIR SINE MIR 32 146 -116 1494 186 207 3 chr9 41543246 41543281 -100728163 - LTR46 LTR ERV1 0 460 433 495 0 0 0 chr9 41543281 41543336 -100728108 + (CA)n Simple_repeat Simple_repeat 2 56 0 1494 186 207 3 chr9 41543336 41543682 -100727762 - LTR46 LTR ERV1 -27 433 1 350 301 135 19 chr9 41543724 41543983 -100727461 - L2 LINE L2 -24 3289 3001 436 178 12 24 chr9 41548482 41548648 -100722796 + HSAT5 Satellite Satellite 1 164 -3 253 286 0 12 chr9 41548723 41548839 -100722605 + HSAT5 Satellite Satellite 1 114 -1 339 232 0 12 chr9 41548885 41548967 -100722477 + HSAT5 Satellite Satellite 3 83 -3 236 203 58 29 chr9 41549043 41549112 -100722332 + HSAT5 Satellite Satellite 1 71 -15 299 211 14 21 chr9 41549213 41549308 -100722136 + HSAT5 Satellite Satellite 1 94 -20 * 530 224 42 33 chr9 41549286 41549462 -100721982 - MSTA LTR MaLR -130 296 127 672 252 178 21 chr9 41549509 41549751 -100721693 + MST-int LTR MaLR 977 1256 -395 286 179 18 0 chr9 41549739 41549795 -100721649 - THE1-int LTR MaLR -613 967 911 * 2482 80 0 0 chr9 41551320 41551620 -100719824 + AluY SINE Alu 11 310 -1 201 375 0 0 chr9 41551875 41551971 -100719473 + (TG)n Simple_repeat Simple_repeat 1 96 0 1265 190 4 22 chr9 41552198 41552467 -100718977 + L1M2c LINE L1 2008 2271 -4518 320 291 0 39 chr9 41752905 41753087 -100518357 + C-rich Low_complexity Low_complexity 4 178 0 343 224 3 50 chr9 41753105 41753446 -100517998 + C-rich Low_complexity Low_complexity 1 325 0 218 206 0 79 chr9 41753869 41753932 -100517512 + (CGGGG)n Simple_repeat Simple_repeat 1 58 0 1494 34 86 26 chr9 41755716 41755950 -100515494 + LTR2B LTR ERV1 1 248 -242 229 113 0 38 chr9 41756345 41756398 -100515046 + (GGGGA)n Simple_repeat Simple_repeat 5 55 0 342 360 0 0 chr9 41756405 41756569 -100514875 + G-rich Low_complexity Low_complexity 1 164 0 1705 151 10 21 chr9 41757224 41757515 -100513929 - AluJo SINE Alu -22 290 3 24 85 0 0 chr9 41758081 41758140 -100513304 + GC_rich Low_complexity Low_complexity 1 59 0 1298 92 11 5 chr9 41761869 41762054 -100509390 - AluSp SINE Alu -127 186 1 2029 135 6 3 chr9 41762136 41762440 -100509004 + AluSx SINE Alu 1 308 -4 243 0 0 0 chr9 41762440 41762467 -100508977 + (CAATG)n Simple_repeat Simple_repeat 2 28 0 2296 73 7 3 chr9 41763176 41763478 -100507966 - AluY SINE Alu -8 303 1 607 111 0 0 chr9 41763510 41763609 -100507835 + HERVI LTR ERV1 1611 1709 -5187 2213 92 3 3 chr9 41763609 41763914 -100507530 + AluSx SINE Alu 1 305 -7 2307 86 20 0 chr9 41763914 41764217 -100507227 + AluY SINE Alu 1 309 -2 1922 125 4 0 chr9 41764251 41764568 -100506876 + AluSx SINE Alu 9 326 0 270 235 99 0 chr9 41764638 41764719 -100506725 + HERVI LTR ERV1 4187 4275 -3510 1358 140 14 19 chr9 41764731 41764867 -100506577 + AluSq SINE Alu 1 137 -176 2541 43 0 3 chr9 41764867 41765170 -100506274 + AluY SINE Alu 1 302 -9 1358 140 14 19 chr9 41765170 41765247 -100506197 + AluSq SINE Alu 137 213 -100 692 136 9 0 chr9 41765347 41765457 -100505987 + AluSq SINE Alu 197 307 -6 180 0 0 0 chr9 41765710 41765730 -100505714 + (TG)n Simple_repeat Simple_repeat 1 20 0 8224 51 20 5 chr9 41765745 41766737 -100504707 - LTR13 LTR ERVK 0 1007 1 1907 140 0 7 chr9 41766737 41767029 -100504415 + AluSx SINE Alu 8 297 -15 296 235 52 17 chr9 41767042 41767157 -100504287 - L1 LINE L1 -1462 4684 4566 708 254 55 0 chr9 41767181 41767346 -100504098 - FRAM SINE Alu -9 167 1 2188 216 33 60 chr9 41767346 41767555 -100503889 - L1 LINE L1 -1690 4456 4243 2398 82 0 0 chr9 41767555 41767858 -100503586 - AluY SINE Alu 0 311 9 2188 216 33 60 chr9 41767858 41768366 -100503078 - L1 LINE L1 -1903 4243 3758 1995 100 10 20 chr9 41769390 41769689 -100501755 - AluSc SINE Alu -13 296 1 1662 176 3 3 chr9 41769768 41770057 -100501387 - AluJb SINE Alu -22 290 2 2260 112 0 6 chr9 41770118 41770430 -100501014 - AluSq SINE Alu -3 310 1 1076 89 0 0 chr9 41770647 41770782 -100500662 + AluSq/x SINE Alu 2 136 -177 2038 120 3 22 chr9 41770782 41771099 -100500345 + AluSx SINE Alu 1 311 -1 1880 130 31 3 chr9 41771101 41771393 -100500051 + AluSx SINE Alu 1 300 -12 229 200 20 0 chr9 41771449 41771499 -100499945 - L2 LINE L2 -2 3270 3220 3028 152 62 8 chr9 41771505 41772098 -100499346 - MER41B LTR ERV1 -7 628 4 372 234 80 7 chr9 41772220 41772357 -100499087 + REP3 LTR ERV 122 268 -294 272 248 76 19 chr9 41772384 41772489 -100498955 - L2 LINE L2 -101 3212 3102 205 284 40 47 chr9 41774909 41775057 -100496387 + (CACG)n Simple_repeat Simple_repeat 4 150 0 222 235 10 110 chr9 41775226 41775481 -100495963 + (CACG)n Simple_repeat Simple_repeat 1 229 0 206 296 0 0 chr9 41775950 41776004 -100495440 + MIR SINE MIR 111 164 -98 209 60 40 40 chr9 41780306 41780356 -100491088 + (CCCCCG)n Simple_repeat Simple_repeat 4 53 0 1205 138 15 75 chr9 41780947 41780970 -100490474 - HERV17 LTR ERV1 -3347 4438 4415 2470 63 0 0 chr9 41780970 41781271 -100490173 + AluY SINE Alu 1 301 -10 1205 138 15 75 chr9 41781271 41781405 -100490039 - HERV17 LTR ERV1 -3370 4415 4301 1985 116 0 53 chr9 41781405 41781725 -100489719 - AluSx SINE Alu -9 303 1 1205 138 15 75 chr9 41781725 41781834 -100489610 - HERV17 LTR ERV1 -3484 4301 4187 1883 121 24 17 chr9 41781905 41782203 -100489241 - AluY SINE Alu -10 301 2 578 140 26 88 chr9 41782204 41782544 -100488900 - HERV17 LTR ERV1 -5760 1136 704 * 1380 186 69 9 chr9 41782531 41782865 -100488579 - HERV17 LTR ERV1 -4918 1731 1378 2300 62 17 0 chr9 41783180 41783472 -100487972 + AluY SINE Alu 2 298 -13 2160 82 21 7 chr9 41784175 41784466 -100486978 - AluY SINE Alu -16 295 1 2157 116 3 0 chr9 41784474 41784776 -100486668 - AluSx SINE Alu -9 303 1 1078 129 6 0 chr9 41785793 41785956 -100485488 + AluSc SINE Alu 146 309 0 1796 159 3 0 chr9 41786329 41786625 -100484819 - AluSx SINE Alu -15 297 1 928 142 0 0 chr9 41786625 41786759 -100484685 - AluSq/x SINE Alu -177 135 2 2086 120 0 3 chr9 41786767 41787066 -100484378 - AluSp SINE Alu -15 298 1 2441 63 0 16 chr9 41788059 41788375 -100483069 + AluY SINE Alu 1 311 0 1330 192 19 11 chr9 41788950 41789211 -100482233 - AluSx SINE Alu -49 263 1 3541 155 29 0 chr9 41789859 41790445 -100480999 - LTR26 LTR ERV1 0 603 1 305 292 133 0 chr9 41791876 41791989 -100479455 - L1MC4 LINE L1 -1332 6710 6583 6708 70 9 0 chr9 41792538 41793820 -100477624 - L1PA7 LINE L1 0 6154 4855 6812 93 2 3 chr9 41793821 41794896 -100476548 + L1PA7 LINE L1 3773 4846 -1300 12071 148 17 9 chr9 41795445 41798274 -100473170 - L1PA13 LINE L1 -2 6161 3320 220 307 132 9 chr9 41800011 41800125 -100471319 + L2 LINE L2 3180 3307 -6 798 313 50 22 chr9 41800751 41801387 -100470057 + L1M4 LINE L1 4544 5197 -949 1891 172 35 58 chr9 41801890 41802286 -100469158 + MLT1B LTR MaLR 4 390 0 304 291 86 26 chr9 41803135 41803252 -100468192 - L2 LINE L2 -1 3312 3189 1618 100 4 25 chr9 41803444 41803684 -100467760 - AluY SINE Alu -76 235 1 495 251 54 35 chr9 41803685 41803805 -100467639 + L1 LINE L1 4343 4459 -1687 2069 108 0 13 chr9 41803805 41804112 -100467332 + AluSq SINE Alu 1 303 -10 495 251 54 35 chr9 41804112 41804246 -100467198 + L1 LINE L1 4459 4679 -1467 1949 104 0 0 chr9 41804246 41804506 -100466938 - AluSx SINE Alu -51 261 2 495 251 54 35 chr9 41804506 41804541 -100466903 + L1 LINE L1 4679 4712 -1434 281 261 203 7 chr9 41804583 41804721 -100466723 + MLT1A1 LTR MaLR 128 292 -73 1979 120 10 10 chr9 41804771 41805062 -100466382 - AluSx SINE Alu -9 303 13 1554 206 0 13 chr9 41805070 41805371 -100466073 - AluJb SINE Alu -15 297 1 296 161 18 0 chr9 41805458 41805514 -100465930 + MLT1I LTR MaLR 353 409 0 2054 126 0 0 chr9 41807505 41807799 -100463645 + AluSq SINE Alu 1 294 -19 2079 100 3 32 chr9 41808610 41808920 -100462524 + AluSp SINE Alu 1 301 -12 1889 127 20 0 chr9 41809971 41810263 -100461181 + AluSx SINE Alu 1 298 -14 780 191 0 14 chr9 41810269 41810410 -100461034 + AluJb SINE Alu 3 141 -171 1923 119 17 17 chr9 41810410 41810703 -100460741 + AluSp SINE Alu 1 293 -20 1892 155 0 7 chr9 41810709 41811012 -100460432 + AluSx SINE Alu 1 301 -11 1885 136 4 0 chr9 41811014 41811317 -100460127 + AluSc SINE Alu 1 304 0 2477 61 0 6 chr9 41811366 41811677 -100459767 - AluY SINE Alu -2 309 1 220 161 43 86 chr9 41813498 41813591 -100457853 + (CTGGGG)n Simple_repeat Simple_repeat 1 89 0 1068 206 127 24 chr9 41814150 41814444 -100457000 - MER54A LTR ERVL -6 895 554 1857 128 10 14 chr9 41814444 41814734 -100456710 + AluSq SINE Alu 3 291 -22 1068 206 127 24 chr9 41814734 41814808 -100456636 - MER54A LTR ERVL -347 554 489 255 286 0 0 chr9 41817778 41817956 -100453488 + (CA)n Simple_repeat Simple_repeat 1 178 0 491 283 6 6 chr9 41817969 41818146 -100453298 + (CA)n Simple_repeat Simple_repeat 2 178 0 263 294 78 10 chr9 41818205 41818307 -100453137 - L2 LINE L2 -6 3266 3158 2253 102 0 3 chr9 41819412 41819715 -100451729 + AluSx SINE Alu 1 302 -10 2253 97 0 3 chr9 41819716 41820014 -100451430 + AluSc SINE Alu 1 297 -12 1380 133 0 0 chr9 41820017 41820213 -100451231 + AluSg/x SINE Alu 102 297 -15 650 159 68 38 chr9 41820214 41820346 -100451098 - AluJo/FRAM SINE Alu -32 280 145 1905 112 16 20 chr9 41820347 41820517 -100450927 - AluSq SINE Alu -8 305 136 2303 83 0 10 chr9 41820517 41820819 -100450625 - AluY SINE Alu -12 299 1 2346 91 0 0 chr9 41820819 41821114 -100450330 - AluSg SINE Alu -13 297 2 1905 112 16 20 chr9 41821114 41821245 -100450199 - AluSq SINE Alu -175 138 4 285 204 57 45 chr9 41821540 41821551 -100449893 + AluJb SINE Alu 125 134 -168 1628 152 13 44 chr9 41821551 41821683 -100449761 + AluJo SINE Alu 1 136 -176 1988 128 0 3 chr9 41821683 41821965 -100449479 + AluSx SINE Alu 14 294 -18 2145 105 16 3 chr9 41821965 41822269 -100449175 + AluSp SINE Alu 1 309 -4 2163 113 7 0 chr9 41822269 41822579 -100448865 + AluSp SINE Alu 1 312 -1 1628 152 13 44 chr9 41822579 41822759 -100448685 + AluJo SINE Alu 133 305 -7 285 204 57 45 chr9 41822759 41822835 -100448609 + AluJb SINE Alu 134 213 -89 469 262 33 31 chr9 41823017 41823423 -100448021 + (TGAG)n Simple_repeat Simple_repeat 1 407 0 222 279 58 41 chr9 41823513 41823685 -100447759 + (TGAG)n Simple_repeat Simple_repeat 4 178 0 202 260 0 52 chr9 41826604 41826700 -100444744 + (CCCTG)n Simple_repeat Simple_repeat 5 95 0 366 226 0 52 chr9 41830728 41830843 -100440601 + (CGGGG)n Simple_repeat Simple_repeat 3 111 0 261 262 6 27 chr9 41833675 41833858 -100437586 + (CACG)n Simple_repeat Simple_repeat 1 179 0 319 274 4 25 chr9 41833863 41834142 -100437302 + (CA)n Simple_repeat Simple_repeat 1 272 0 410 328 11 11 chr9 41834198 41834375 -100437069 + (CA)n Simple_repeat Simple_repeat 1 177 0 363 333 11 11 chr9 41834402 41834576 -100436868 + (CA)n Simple_repeat Simple_repeat 2 175 0 190 324 14 0 chr9 41838966 41839040 -100432404 - MIR SINE MIR -132 130 56 189 0 0 0 chr9 41840086 41840107 -100431337 + (CAGCC)n Simple_repeat Simple_repeat 1 21 0 21 57 0 0 chr9 41841524 41841559 -100429885 + GC_rich Low_complexity Low_complexity 1 35 0 312 200 0 0 chr9 41841581 41841661 -100429783 + G-rich Low_complexity Low_complexity 3 82 0 2308 67 3 3 chr9 41842163 41842462 -100428982 + AluY SINE Alu 1 299 -12 1244 134 0 0 chr9 41842462 41842641 -100428803 + AluSq SINE Alu 134 312 -1 916 208 0 0 chr9 41842644 41842803 -100428641 + AluJo/FRAM SINE Alu 137 295 -7 255 319 104 15 chr9 41842840 41843110 -100428334 - L1MEd LINE L1 -5206 913 620 1776 144 14 7 chr9 41843309 41843601 -100427843 - AluJb SINE Alu -18 294 1 355 299 58 39 chr9 41843604 41843758 -100427686 - L1MEd LINE L1 -5949 170 14 25 0 0 0 chr9 41844273 41844298 -100427146 + GC_rich Low_complexity Low_complexity 1 25 0 202 205 26 39 chr9 41846439 41846517 -100424927 + (CCCCG)n Simple_repeat Simple_repeat 2 78 0 216 0 0 0 chr9 41849116 41849140 -100422304 + (CGAG)n Simple_repeat Simple_repeat 1 24 0 23 0 0 0 chr9 41849247 41849270 -100422174 + GC_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr9 41849362 41849383 -100422061 + GC_rich Low_complexity Low_complexity 1 21 0 28 61 0 0 chr9 41853125 41853174 -100418270 + GC_rich Low_complexity Low_complexity 1 49 0 2312 43 0 3 chr9 41856371 41856680 -100414764 - AluY SINE Alu 0 308 1 1959 109 25 0 chr9 41856834 41857109 -100414335 - AluSx SINE Alu -30 282 1 1743 161 35 0 chr9 41857111 41857396 -100414048 - AluJb SINE Alu -16 296 2 674 197 16 8 chr9 41857400 41857527 -100413917 - FLAM_C SINE Alu -5 128 1 1206 163 80 73 chr9 41858740 41859040 -100412404 - AluJo SINE Alu -10 302 1 1949 119 27 7 chr9 41859116 41859410 -100412034 + AluSg SINE Alu 1 300 -10 1559 172 26 23 chr9 41859419 41859558 -100411886 + AluSx SINE Alu 1 138 -174 2130 104 3 3 chr9 41859558 41859855 -100411589 + AluSq SINE Alu 3 299 -14 1559 172 26 23 chr9 41859855 41860023 -100411421 + AluSx SINE Alu 138 309 -3 894 78 0 8 chr9 41860115 41860243 -100411201 - FLAM_C SINE Alu -16 127 1 484 95 0 40 chr9 41860245 41860319 -100411125 - Alu SINE Alu -19 291 221 1016 115 48 0 chr9 41860319 41860506 -100410938 - LTR10A LTR ERV1 0 609 366 2403 64 20 0 chr9 41860506 41860802 -100410642 - AluY SINE Alu -9 302 1 2103 112 7 3 chr9 41860802 41861105 -100410339 - AluSx SINE Alu -8 304 1 485 101 0 0 chr9 41861105 41861184 -100410260 - Harlequin LTR ERV1 -5187 1709 1631 189 0 0 0 chr9 41861414 41861435 -100410009 + (CCG)n Simple_repeat Simple_repeat 2 22 0 219 167 42 21 chr9 41863073 41863121 -100408323 + L3 LINE CR1 612 660 -917 918 98 15 8 chr9 41864824 41864956 -100406488 + AluSp SINE Alu 1 133 -180 2151 117 3 3 chr9 41864968 41865277 -100406167 + AluY SINE Alu 1 309 -2 2287 93 3 0 chr9 41865370 41865670 -100405774 - AluY SINE Alu -10 301 1 1551 167 20 30 chr9 41865974 41866273 -100405171 - AluSx SINE Alu -16 296 1 2395 69 0 3 chr9 41866276 41866582 -100404862 - AluY SINE Alu -6 305 1 1911 122 4 0 chr9 41866622 41866900 -100404544 - AluY SINE Alu -5 306 28 1871 125 46 0 chr9 41867122 41867403 -100404041 - AluSg SINE Alu -16 294 1 787 193 12 30 chr9 41867408 41867574 -100403870 - AluJo/FRAM SINE Alu -16 296 134 1633 182 19 0 chr9 41867574 41867881 -100403563 - 7SLRNA srpRNA srpRNA -7 313 1 298 211 53 0 chr9 41868123 41868199 -100403245 + AluJ/FRAM SINE Alu 223 302 0 1885 140 20 0 chr9 41868202 41868495 -100402949 + AluSx SINE Alu 1 299 -13 23 0 0 0 chr9 41869180 41869203 -100402241 + GC_rich Low_complexity Low_complexity 1 23 0 24 85 0 0 chr9 41869702 41869761 -100401683 + GC_rich Low_complexity Low_complexity 1 59 0 340 210 0 0 chr9 41869842 41869923 -100401521 - AluSg SINE Alu 0 300 220 726 149 182 7 chr9 41869924 41870078 -100401366 - AluSg SINE Alu -124 186 6 1670 143 0 21 chr9 41870126 41870413 -100401031 + AluJb SINE Alu 15 295 -17 304 214 208 45 chr9 41870605 41870783 -100400661 - L1MC4 LINE L1 -64 7978 7772 1728 130 0 0 chr9 41870887 41871141 -100400303 - AluSx SINE Alu 0 312 59 851 85 15 31 chr9 41871158 41871288 -100400156 + AluSp/q SINE Alu 167 294 -19 1747 132 75 0 chr9 41871291 41871572 -100399872 + AluSx SINE Alu 1 302 -10 1272 148 157 0 chr9 41871576 41871812 -100399632 - AluJb SINE Alu -19 293 21 653 265 36 54 chr9 41871887 41871930 -100399514 - MER74B LTR ERVL -82 540 498 8090 55 2 0 chr9 41871930 41872897 -100398547 + LTR5 LTR ERVK 1 969 0 653 265 36 54 chr9 41872897 41873057 -100398387 - MER74B LTR ERVL -124 498 337 2204 101 0 3 chr9 41873057 41873355 -100398089 + AluSq SINE Alu 1 297 -16 2337 98 0 0 chr9 41873355 41873662 -100397782 + AluY SINE Alu 1 307 -4 653 265 36 54 chr9 41873662 41873792 -100397652 - MER74B LTR ERVL -283 339 211 264 316 99 28 chr9 41874052 41874264 -100397180 + L1M3e LINE L1 1439 1665 -5365 3827 47 42 4 chr9 41874358 41874830 -100396614 - LTR2B LTR ERV1 0 490 1 21761 119 15 7 chr9 41874830 41878343 -100393101 - Harlequin LTR ERV1 -1 6895 3352 5770 61 44 11 chr9 41878342 41878879 -100392565 - Harlequin LTR ERV1 -4322 2574 1989 * 2618 30 0 0 chr9 41878879 41879179 -100392265 + AluY SINE Alu 1 300 -11 5770 61 44 11 chr9 41879179 41879612 -100391832 - Harlequin LTR ERV1 -4907 1989 1572 * 5835 89 23 6 chr9 41879598 41880483 -100390961 - Harlequin LTR ERV1 -5996 900 1 1178 44 6 0 chr9 41880483 41880641 -100390803 - LTR2B LTR ERV1 0 490 332 522 181 0 29 chr9 41880747 41880852 -100390592 - AluSq/x SINE Alu -209 104 3 2822 214 53 50 chr9 41880854 41880975 -100390469 - L1 LINE L1 -1684 4462 4343 2385 69 10 0 chr9 41880975 41881279 -100390165 + AluY SINE Alu 1 307 -4 2822 214 53 50 chr9 41881279 41881671 -100389773 - L1 LINE L1 -1803 4343 3953 1812 113 4 0 chr9 41881671 41881928 -100389516 + AluSp SINE Alu 49 306 -7 1968 92 58 20 chr9 41881929 41882221 -100389223 + AluY SINE Alu 1 303 -8 2822 214 53 50 chr9 41882221 41882655 -100388789 - L1 LINE L1 -2192 3954 3510 292 169 31 15 chr9 41882656 41882721 -100388723 - L1MD3 LINE L1 -10 7985 7920 250 203 47 31 chr9 41882783 41882847 -100388597 - L1MC3 LINE L1 -225 7560 7496 1759 123 23 52 chr9 41884651 41884961 -100386483 + AluSq SINE Alu 1 301 -12 811 194 0 25 chr9 41884961 41885121 -100386323 + AluSg/x SINE Alu 140 295 -17 842 102 16 23 chr9 41885204 41885332 -100386112 - FLAM_C SINE Alu -16 127 1 1863 129 13 26 chr9 41885334 41885425 -100386019 - AluSx SINE Alu -13 299 208 1495 182 102 62 chr9 41885425 41885858 -100385586 + LTR7 LTR ERV1 1 450 0 1863 129 13 26 chr9 41885858 41886069 -100385375 - AluSx SINE Alu -104 208 1 489 134 24 0 chr9 41886074 41886156 -100385288 - Alu SINE Alu 0 310 227 2137 158 140 0 chr9 41886175 41886515 -100384929 - LTR10A LTR ERV1 -62 547 119 1808 133 207 13 chr9 41886515 41886892 -100384552 + LTR7 LTR ERV1 1 450 0 2137 158 140 0 chr9 41886892 41887031 -100384413 - LTR10A LTR ERV1 -490 119 1 24 47 0 47 chr9 41887580 41887644 -100383800 + GC_rich Low_complexity Low_complexity 1 61 0 208 111 67 0 chr9 41887714 41887784 -100383660 + (CGGGG)n Simple_repeat Simple_repeat 1 74 0 1844 106 41 10 chr9 41888469 41888761 -100382683 - AluSg SINE Alu -7 303 3 1865 50 50 0 chr9 41888771 41889011 -100382433 - AluY SINE Alu 0 311 60 1108 39 0 0 chr9 41889011 41889138 -100382306 - AluY SINE Alu -176 135 9 1830 152 0 0 chr9 41889146 41889436 -100382008 - AluSc SINE Alu -19 290 1 516 231 0 0 chr9 41889699 41889807 -100381637 - FLAM_A SINE Alu -15 127 20 2324 72 13 0 chr9 41889824 41890131 -100381313 - AluY SINE Alu 0 311 1 1925 130 3 7 chr9 41890142 41890442 -100381002 - AluSx SINE Alu -13 299 1 2173 86 7 0 chr9 41892158 41892450 -100378994 - AluY SINE Alu -17 294 1 1346 149 0 0 chr9 41892457 41892665 -100378779 - AluSg/x SINE Alu -20 292 85 935 167 61 5 chr9 41892668 41892866 -100378578 - AluSg/x SINE Alu -17 293 85 2077 79 18 0 chr9 41893320 41893656 -100377788 - AluSp SINE Alu 0 341 1 994 70 8 0 chr9 41893660 41893789 -100377655 - AluSp SINE Alu -183 130 1 1834 144 17 0 chr9 41893791 41894082 -100377362 - AluSx SINE Alu -16 296 1 435 309 8 6 chr9 41895037 41895459 -100375985 + (CA)n Simple_repeat Simple_repeat 1 422 0 283 300 10 3 chr9 41895490 41895810 -100375634 + (CA)n Simple_repeat Simple_repeat 1 322 0 325 314 5 32 chr9 41895831 41896016 -100375428 + (CA)n Simple_repeat Simple_repeat 1 180 0 2035 118 0 10 chr9 41896960 41897257 -100374187 - AluSg SINE Alu -16 294 1 1201 171 15 0 chr9 41898588 41898793 -100372651 + AluJb SINE Alu 85 292 -20 1428 134 36 82 chr9 41898794 41899100 -100372344 + AluSc SINE Alu 1 292 -17 1057 165 0 0 chr9 41899100 41899270 -100372174 + AluSp SINE Alu 134 303 -10 1747 122 3 91 chr9 41899272 41899592 -100371852 + AluSx SINE Alu 1 292 -20 1883 112 14 20 chr9 41899967 41900263 -100371181 - AluY SINE Alu -17 294 1 835 116 16 16 chr9 41900267 41900396 -100371048 - AluSp SINE Alu -172 141 13 2269 75 7 0 chr9 41902991 41903286 -100368158 + AluY SINE Alu 2 298 -13 1687 143 4 8 chr9 41903779 41904037 -100367407 - AluSq SINE Alu -56 257 1 965 183 106 84 chr9 41904043 41904260 -100367184 - AluJb SINE Alu -20 292 66 2099 110 0 0 chr9 41904260 41904551 -100366893 + AluSg SINE Alu 1 291 -19 965 183 106 84 chr9 41904551 41904606 -100366838 - AluJb SINE Alu -246 66 14 22 35 0 0 chr9 41904617 41904646 -100366798 + AT_rich Low_complexity Low_complexity 1 29 0 1286 121 15 5 chr9 41904646 41904844 -100366600 - AluSq SINE Alu -113 200 1 1952 132 10 0 chr9 41907030 41907319 -100364125 + AluSc SINE Alu 1 292 -17 269 196 18 0 chr9 41907534 41907590 -100363854 - MLT1I LTR MaLR 0 409 353 1647 190 0 0 chr9 41907688 41907967 -100363477 + AluJb SINE Alu 9 287 -25 1880 144 10 0 chr9 41907987 41908286 -100363158 + AluSx SINE Alu 7 308 -4 1776 132 10 46 chr9 41908290 41908435 -100363009 + AluSx SINE Alu 1 131 -181 2226 98 0 3 chr9 41908435 41908740 -100362704 + AluSg SINE Alu 1 304 -6 1776 132 10 46 chr9 41908740 41908897 -100362547 + AluSx SINE Alu 131 292 -20 849 226 76 4 chr9 41908940 41909215 -100362229 - L1 LINE L1 -1903 4243 3949 934 92 0 0 chr9 41909275 41909395 -100362049 - AluSq/x SINE Alu -192 120 1 1498 230 72 0 chr9 41909410 41909828 -100361616 - L1 LINE L1 -2191 3955 3508 252 219 16 16 chr9 41909827 41909891 -100361553 - L1MC3 LINE L1 -13 7772 7709 * 250 203 47 31 chr9 41909954 41910018 -100361426 - L1MC3 LINE L1 -225 7560 7496 1206 163 80 73 chr9 41912984 41913284 -100358160 - AluJo SINE Alu -10 302 1 1939 114 28 7 chr9 41913360 41913649 -100357795 + AluSg SINE Alu 1 295 -15 1525 179 26 23 chr9 41913659 41913798 -100357646 + AluSx SINE Alu 1 138 -174 2099 111 3 3 chr9 41913798 41914095 -100357349 + AluSq SINE Alu 3 299 -14 1525 179 26 23 chr9 41914095 41914263 -100357181 + AluSx SINE Alu 138 309 -3 918 70 0 8 chr9 41914355 41914483 -100356961 - FLAM_C SINE Alu -16 127 1 433 71 57 43 chr9 41914485 41914555 -100356889 - Alu SINE Alu -19 291 221 968 118 51 0 chr9 41914555 41914732 -100356712 - LTR10A LTR ERV1 0 609 376 2536 62 0 0 chr9 41914734 41915042 -100356402 - AluY SINE Alu -3 308 1 180 0 0 0 chr9 41915051 41915071 -100356373 + (T)n Simple_repeat Simple_repeat 1 20 0 1703 108 13 0 chr9 41915071 41915303 -100356141 - AluSg SINE Alu -75 235 1 2236 92 3 3 chr9 41915356 41915660 -100355784 - AluSx SINE Alu -8 304 1 2107 102 3 13 chr9 41915660 41915964 -100355480 - AluSx SINE Alu -11 301 1 514 91 0 109 chr9 41915964 41916037 -100355407 - Harlequin LTR ERV1 -5187 1709 1650 2292 54 3 10 chr9 41916037 41916335 -100355109 + AluY SINE Alu 1 296 -15 514 91 0 109 chr9 41916335 41916371 -100355073 - Harlequin LTR ERV1 -5246 1650 1612 321 100 0 0 chr9 41916371 41916421 -100355023 + (TA)n Simple_repeat Simple_repeat 2 51 0 726 218 39 10 chr9 41916438 41916644 -100354800 + AluY SINE Alu 1 212 -99 183 232 0 0 chr9 41917033 41917089 -100354355 + (CCCCAG)n Simple_repeat Simple_repeat 4 59 0 609 196 43 43 chr9 41918048 41918092 -100353352 - MER20 DNA MER1_type 0 219 176 1477 199 17 14 chr9 41918092 41918389 -100353055 - AluJo SINE Alu -14 298 1 609 196 43 43 chr9 41918389 41918507 -100352937 - MER20 DNA MER1_type -42 177 57 814 215 6 0 chr9 41918512 41918670 -100352774 + FRAM SINE Alu 2 160 -16 2049 104 3 10 chr9 41918807 41918922 -100352522 + AluSq SINE Alu 21 135 -178 2459 40 7 3 chr9 41918922 41919218 -100352226 + AluY SINE Alu 1 297 -14 2049 104 3 10 chr9 41919218 41919391 -100352053 + AluSq SINE Alu 135 307 -6 2092 112 3 3 chr9 41919399 41919693 -100351751 + AluSx SINE Alu 3 296 -16 347 100 0 0 chr9 41919703 41919753 -100351691 - Alu SINE Alu -252 50 1 2081 99 6 38 chr9 41919754 41920068 -100351376 - AluSx SINE Alu -8 304 1 2044 116 0 23 chr9 41920878 41921188 -100350256 - AluSc SINE Alu -6 303 1 2262 117 0 0 chr9 41921188 41921496 -100349948 - AluSx SINE Alu -4 308 1 2141 105 7 0 chr9 41921823 41922119 -100349325 - AluSx SINE Alu -14 298 1 1439 178 14 51 chr9 41925830 41925995 -100345449 - AluJo SINE Alu -10 302 151 2208 89 7 0 chr9 41925995 41926286 -100345158 - AluY SINE Alu -18 293 1 1439 178 14 51 chr9 41926286 41926413 -100345031 - AluJo SINE Alu -161 151 21 2272 76 10 0 chr9 41926584 41926873 -100344571 - AluY SINE Alu -19 292 1 2060 123 3 0 chr9 41926877 41927170 -100344274 - AluSp SINE Alu -19 294 1 1144 144 0 0 chr9 41927170 41927351 -100344093 - AluSg/x SINE Alu -7 305 125 2066 119 7 0 chr9 41927418 41927721 -100343723 - AluSc SINE Alu -4 305 1 1263 200 76 5 chr9 41929825 41930310 -100341134 - MER66-int LTR ERV1 -4677 1999 1445 292 79 16 16 chr9 41930326 41930370 -100341074 + Alu SINE Alu 1 44 -264 299 78 16 16 chr9 41930370 41930414 -100341030 + AluS SINE Alu 1 44 -259 344 47 16 16 chr9 41930414 41930458 -100340986 + AluS SINE Alu 1 44 -259 339 62 15 15 chr9 41930458 41930502 -100340942 + Alu SINE Alu 1 44 -264 279 67 0 22 chr9 41930502 41930547 -100340897 + Alu SINE Alu 1 44 -259 2136 120 0 0 chr9 41930547 41930839 -100340605 + AluSc SINE Alu 1 292 -17 1024 189 32 57 chr9 41930839 41931260 -100340184 - MER66-int LTR ERV1 -5562 1114 653 930 124 0 28 chr9 41931260 41931405 -100340039 + FLAM_C SINE Alu 1 141 -2 2130 110 0 16 chr9 41931406 41931714 -100339730 + AluSc SINE Alu 1 303 -6 457 258 24 0 chr9 41931804 41931928 -100339516 + MER66-int LTR ERV1 213 339 -6337 286 175 35 0 chr9 41932073 41932130 -100339314 - AluSp/q SINE Alu -5 298 240 1400 84 0 0 chr9 41932131 41932310 -100339134 - AluY SINE Alu -132 179 1 442 172 108 0 chr9 41932344 41932437 -100339007 - MER66B LTR ERV1 0 486 384 760 233 11 23 chr9 41932437 41932613 -100338831 - AluSq SINE Alu -3 310 137 1919 112 22 0 chr9 41932628 41932897 -100338547 - AluSx SINE Alu -37 275 1 455 293 45 20 chr9 41932924 41933122 -100338322 - MER66B LTR ERV1 -142 344 142 2040 94 43 0 chr9 41936855 41937132 -100334312 - AluSx SINE Alu -23 289 1 1369 160 98 0 chr9 41937153 41937266 -100334178 - AluJo SINE Alu -44 268 168 2493 41 3 22 chr9 41937266 41937582 -100333862 - AluY SINE Alu -1 310 1 1369 160 98 0 chr9 41937582 41937712 -100333732 - AluJo SINE Alu -144 168 1 312 61 41 0 chr9 41937712 41937761 -100333683 - AluJo SINE Alu -167 135 85 1627 111 43 0 chr9 41937836 41938070 -100333374 - AluSx SINE Alu -68 244 1 180 0 0 0 chr9 41938084 41938104 -100333340 + (CAA)n Simple_repeat Simple_repeat 2 21 0 195 290 0 43 chr9 41938354 41938423 -100333021 - L2 LINE L2 -210 3062 2997 915 76 0 0 chr9 41938585 41938703 -100332741 + AluSg/x SINE Alu 182 299 -11 1732 122 26 51 chr9 41938704 41939016 -100332428 + AluSx SINE Alu 2 305 -7 353 231 136 0 chr9 41939243 41939412 -100332032 - MER63 DNA MER1_type -45 1016 825 240 265 0 15 chr9 41939491 41939534 -100331910 - AluJb SINE Alu -123 179 136 1901 128 0 49 chr9 41939534 41939839 -100331605 - AluSx SINE Alu -22 290 1 240 265 0 15 chr9 41939839 41939863 -100331581 - AluJb SINE Alu -166 136 113 2286 88 13 0 chr9 41941178 41941486 -100329958 - AluSx SINE Alu 0 312 1 186 200 147 21 chr9 41943645 41943740 -100327704 - L2 LINE L2 -33 3239 3133 2021 121 7 0 chr9 41944178 41944467 -100326977 - AluSx SINE Alu -21 291 1 414 142 142 19 chr9 41945447 41945553 -100325891 + MER20 DNA MER1_type 53 171 -48 2113 112 7 0 chr9 41946611 41946906 -100324538 - AluSg SINE Alu -13 297 1 2352 61 3 0 chr9 41947084 41947377 -100324067 + AluY SINE Alu 1 294 -17 1620 169 35 0 chr9 41947422 41947706 -100323738 + AluJo SINE Alu 4 297 -15 2162 88 10 7 chr9 41947726 41948021 -100323423 + AluY SINE Alu 1 296 -15 2242 94 3 0 chr9 41948128 41948425 -100323019 - AluSx SINE Alu -14 298 1 1663 149 57 4 chr9 41948432 41948713 -100322731 - AluJo SINE Alu -16 296 1 1303 172 13 89 chr9 41948870 41949173 -100322271 + AluJb SINE Alu 21 300 -12 2274 90 0 0 chr9 41949173 41949474 -100321970 + AluY SINE Alu 1 301 -10 255 261 85 24 chr9 41949565 41949730 -100321714 + (CTCA)n Simple_repeat Simple_repeat 4 178 0 417 257 45 21 chr9 41949751 41950163 -100321281 + (CTCA)n Simple_repeat Simple_repeat 1 421 0 231 286 31 56 chr9 42050642 42050803 -100220641 + L1MC4 LINE L1 6831 6987 -1055 1024 209 72 11 chr9 42050975 42051399 -100220045 + MLT1D LTR MaLR 5 501 -4 243 319 33 66 chr9 42051788 42051997 -100219447 - L2 LINE L2 -883 2431 2229 2009 137 7 3 chr9 42051997 42052289 -100219155 + AluSc SINE Alu 1 293 -16 243 319 33 66 chr9 42052289 42052320 -100219124 - L2 LINE L2 -1085 2229 2199 1196 249 39 21 chr9 42052677 42053007 -100218437 - MER4D LTR ERV1 0 903 568 1510 177 14 7 chr9 42053074 42053357 -100218087 - MER49 LTR ERV1 -638 285 1 2095 93 0 4 chr9 42053871 42054149 -100217295 - AluSg SINE Alu -33 277 1 5709 168 11 16 chr9 42054224 42055287 -100216157 - L1 LINE L1 -1579 4567 3510 439 268 70 66 chr9 42056077 42056320 -100215124 + L1MB2 LINE L1 174 417 -5896 4518 227 56 31 chr9 42056322 42057592 -100213852 + L1MB2 LINE L1 2052 3340 -3042 2210 101 7 0 chr9 42057592 42057888 -100213556 + AluY SINE Alu 1 298 -13 4518 227 56 31 chr9 42057888 42058820 -100212624 + L1MB2 LINE L1 3340 4248 -2134 308 191 26 29 chr9 42058870 42058963 -100212481 + L1MB2 LINE L1 4233 4324 -2058 * 39604 60 7 2 chr9 42058959 42065081 -100206363 + L1PA5 LINE L1 2 6154 0 4309 190 50 30 chr9 42065090 42065120 -100206324 + L1MB2 LINE L1 4312 4340 -2067 2373 55 3 35 chr9 42065120 42065430 -100206014 - AluY SINE Alu -11 300 1 4309 190 50 30 chr9 42065430 42065804 -100205640 + L1MB2 LINE L1 4340 4705 -1702 2032 127 0 10 chr9 42065804 42066123 -100205321 + AluJb SINE Alu 1 312 0 4309 190 50 30 chr9 42066123 42067754 -100203690 + L1MB2 LINE L1 4705 6389 -18 2233 66 3 35 chr9 42067768 42068086 -100203358 - AluY SINE Alu -3 308 1 446 194 21 11 chr9 42068899 42068992 -100202452 - MER20 DNA MER1_type -125 94 1 2474 55 3 3 chr9 42069248 42069558 -100201886 + AluY SINE Alu 1 310 -1 306 215 45 25 chr9 42069708 42069741 -100201703 + L1ME LINE L1 5637 5668 -454 2469 62 0 13 chr9 42069741 42070046 -100201398 + AluY SINE Alu 1 301 -10 306 215 45 25 chr9 42070046 42070144 -100201300 + L1ME LINE L1 5668 5767 -355 2570 49 0 0 chr9 42070219 42070525 -100200919 + AluY SINE Alu 1 306 -5 22 35 0 0 chr9 42071426 42071455 -100199989 + AT_rich Low_complexity Low_complexity 1 29 0 2294 88 0 14 chr9 42072029 42072324 -100199120 - AluY SINE Alu -20 291 1 23 33 0 0 chr9 42072347 42072377 -100199067 + AT_rich Low_complexity Low_complexity 1 30 0 366 325 43 11 chr9 42072789 42072977 -100198467 - L1M4 LINE L1 -1693 4453 4260 285 29 0 0 chr9 42072985 42073019 -100198425 + (CA)n Simple_repeat Simple_repeat 2 35 0 6344 61 2 24 chr9 42073019 42074411 -100197033 - L1PA7 LINE L1 -20 6134 4774 5961 195 46 31 chr9 42074496 42076653 -100194791 - L1MB5 LINE L1 -6 7587 5378 2042 121 0 36 chr9 42076653 42076959 -100194485 - AluSg SINE Alu -15 295 1 5961 195 46 31 chr9 42076959 42077366 -100194078 - L1MB5 LINE L1 -2215 5378 4979 3927 92 21 9 chr9 42077372 42077945 -100193499 - L1PB2 LINE L1 -2 6149 5570 2394 80 0 6 chr9 42077945 42078258 -100193186 + AluY SINE Alu 1 311 0 6380 170 9 17 chr9 42078299 42079521 -100191923 - L1PB2 LINE L1 -565 5586 4384 2197 135 0 3 chr9 42079521 42079833 -100191611 - AluSx SINE Alu -1 311 1 6380 170 9 17 chr9 42079833 42080286 -100191158 - L1PB2 LINE L1 -1767 4384 3929 6076 204 19 13 chr9 42080287 42081791 -100189653 + L1PB2 LINE L1 2398 3910 -2236 788 225 22 18 chr9 42081787 42082014 -100189430 - L1MB5 LINE L1 -2568 4997 4770 * 2458 80 0 0 chr9 42082014 42082313 -100189131 - AluSx SINE Alu -13 299 1 1237 216 69 28 chr9 42082315 42082623 -100188821 - L1MB5 LINE L1 -3153 4412 4081 2408 55 0 19 chr9 42082623 42082931 -100188513 - AluY SINE Alu -9 302 1 1237 216 69 28 chr9 42082931 42083044 -100188400 - L1MB5 LINE L1 -3484 4081 3974 975 187 25 46 chr9 42083046 42083380 -100188064 - MSTB1 LTR MaLR 0 432 10 508 275 5 5 chr9 42083410 42083603 -100187841 - L1MB5 LINE L1 -3588 3977 3785 * 1875 255 79 26 chr9 42083595 42084414 -100187030 - L1MB5 LINE L1 -4138 3427 2565 642 274 15 75 chr9 42084420 42084832 -100186612 - L1MB5 LINE L1 -5930 1559 1173 651 150 176 13 chr9 42084864 42085017 -100186427 - L1MB5 LINE L1 -6846 643 466 261 308 131 0 chr9 42085912 42086042 -100185402 - MIR3 SINE MIR -6 202 56 316 342 83 22 chr9 42087015 42087243 -100184201 + L2 LINE L2 154 395 -2919 327 85 0 0 chr9 42087398 42087445 -100183999 + (CA)n Simple_repeat Simple_repeat 2 48 0 2502 65 0 7 chr9 42087484 42087793 -100183651 + AluY SINE Alu 1 307 -4 2901 183 8 29 chr9 42087803 42088389 -100183055 - ERVL LTR ERVL -377 5387 4814 1663 188 65 31 chr9 42088476 42088891 -100182553 - MLT2B1 LTR ERVL -91 429 1 624 237 87 97 chr9 42089240 42089279 -100182165 - MLT1I LTR MaLR -38 371 333 2406 96 3 0 chr9 42089279 42089581 -100181863 + AluSg SINE Alu 1 303 -7 624 237 87 97 chr9 42089581 42089862 -100181582 - MLT1I LTR MaLR -76 333 54 2105 79 52 24 chr9 42089890 42090181 -100181263 - AluY SINE Alu -12 299 1 2615 55 0 0 chr9 42090481 42090791 -100180653 - AluY SINE Alu -1 310 1 884 279 96 18 chr9 42091138 42091536 -100179908 + MLT1E2 LTR MaLR 140 568 -58 2406 60 3 13 chr9 42092546 42092847 -100178597 - AluY SINE Alu -13 298 1 202 261 0 0 chr9 42092871 42092917 -100178527 - L3 LINE CR1 -106 1471 1426 2088 115 37 0 chr9 42093001 42093178 -100178266 - AluSc SINE Alu 0 309 115 234 0 0 0 chr9 42093178 42093204 -100178240 + (TG)n Simple_repeat Simple_repeat 2 27 0 2088 115 37 0 chr9 42093204 42093322 -100178122 - AluSc SINE Alu -194 115 3 24 0 0 0 chr9 42093718 42093742 -100177702 + AT_rich Low_complexity Low_complexity 1 24 0 3247 172 5 4 chr9 42093939 42094492 -100176952 + MER41D LTR ERV1 2 555 -2 2292 117 0 0 chr9 42094858 42095300 -100176144 - AluSc SINE Alu 0 442 1 3090 156 27 9 chr9 42095551 42096115 -100175329 - LTR69 LTR ERVL -7 581 8 242 277 12 0 chr9 42096236 42096319 -100175125 - HAL1 LINE L1 -393 2114 2031 240 281 48 68 chr9 42096372 42096518 -100174926 - LTR16C LTR ERVL -2 489 347 1744 105 4 0 chr9 42096520 42096748 -100174696 + AluSc SINE Alu 67 295 -14 365 278 83 33 chr9 42097184 42097364 -100174080 - HAL1 LINE L1 -2311 196 8 2522 49 0 3 chr9 42097670 42097976 -100173468 + AluY SINE Alu 1 305 -6 600 115 98 0 chr9 42098018 42098140 -100173304 - L1PB3 LINE L1 -145 6009 5876 495 259 24 0 chr9 42098140 42098306 -100173138 - L1M4 LINE L1 -1755 4391 4222 3421 205 57 33 chr9 42098470 42098988 -100172456 - L1MB7 LINE L1 0 6184 5680 2260 90 7 3 chr9 42098988 42099278 -100172166 - AluSg SINE Alu -19 291 1 3421 205 57 33 chr9 42099278 42100365 -100171079 - L1MB7 LINE L1 -504 5680 4534 887 104 0 24 chr9 42100365 42100515 -100170929 + AluSp/q SINE Alu 174 320 0 526 169 29 0 chr9 42100531 42100667 -100170777 - L1MB7 LINE L1 -1632 4514 4375 23 0 0 0 chr9 42100668 42100691 -100170753 + AT_rich Low_complexity Low_complexity 1 23 0 363 279 0 8 chr9 42100826 42100955 -100170489 - L1MB7 LINE L1 -1872 4274 4147 308 291 130 11 chr9 42101072 42101525 -100169919 - L1MB7 LINE L1 -3218 2928 2422 377 342 88 11 chr9 42101526 42101789 -100169655 - L1MEc LINE L1 -3947 2449 2167 27 29 0 0 chr9 42101845 42101879 -100169565 + AT_rich Low_complexity Low_complexity 1 34 0 1054 206 23 68 chr9 42101949 42102259 -100169185 - MLT2B1 LTR ERVL -118 296 1 3670 187 19 54 chr9 42102434 42102568 -100168876 - L1MB4 LINE L1 0 6416 6279 414 0 0 0 chr9 42102568 42102614 -100168830 + (TA)n Simple_repeat Simple_repeat 2 47 0 2184 72 4 4 chr9 42102619 42102897 -100168547 - AluY SINE Alu -33 278 1 3670 187 19 54 chr9 42102897 42103681 -100167763 - L1MB4 LINE L1 -141 6275 5525 1985 146 128 13 chr9 42103681 42104065 -100167379 - MSTA LTR MaLR 0 428 1 3670 187 19 54 chr9 42104065 42104096 -100167348 - L1MB4 LINE L1 -891 5525 5494 231 136 23 0 chr9 42104134 42104178 -100167266 - L1MB4 LINE L1 -865 5517 5473 * 2059 151 31 26 chr9 42104164 42104450 -100166994 - L1MB4 LINE L1 -5991 393 103 2129 93 3 10 chr9 42104450 42104750 -100166694 + AluY SINE Alu 1 298 -13 2059 151 31 26 chr9 42104750 42104854 -100166590 - L1MB4 LINE L1 -6281 103 1 1696 222 50 10 chr9 42104899 42105493 -100165951 - L1MEc LINE L1 -2702 3513 2896 362 214 0 48 chr9 42105494 42105620 -100165824 - Charlie5 DNA MER1_type -77 2535 2416 3696 162 18 34 chr9 42105632 42106420 -100165024 + LTR1 LTR ERV1 11 785 0 1375 220 13 16 chr9 42106483 42106865 -100164579 - L1MEc LINE L1 -3314 2901 2521 340 304 66 33 chr9 42106898 42107079 -100164365 - L1MEc LINE L1 -4580 1816 1630 496 252 248 0 chr9 42107123 42107369 -100164075 - L1MD2 LINE L1 -10 6349 6043 300 259 129 17 chr9 42107392 42107508 -100163936 - L1MD1 LINE L1 -170 6072 5944 1849 162 45 38 chr9 42107541 42107881 -100163563 - L1MDa LINE L1 -3982 2558 2222 2136 79 18 4 chr9 42107881 42108183 -100163261 + AluY SINE Alu 1 306 0 1849 162 45 38 chr9 42108183 42108427 -100163017 - L1MDa LINE L1 -4318 2222 1846 2448 60 17 0 chr9 42109162 42109461 -100161983 + AluSp SINE Alu 1 304 -9 2569 56 0 3 chr9 42110014 42110318 -100161126 + AluY SINE Alu 1 303 -8 227 340 46 56 chr9 42110422 42110619 -100160825 + L3 LINE CR1 1381 1575 -2 2423 96 3 0 chr9 42111181 42111493 -100159951 - AluSq SINE Alu 0 313 1 387 229 34 42 chr9 42111851 42111969 -100159475 - MER20 DNA MER1_type -4 215 99 2228 79 14 3 chr9 42112099 42112391 -100159053 + AluSc SINE Alu 1 295 -14 1983 185 117 76 chr9 42112768 42113266 -100158178 - MLT2B1 LTR ERVL 0 520 3 2425 78 0 0 chr9 42113429 42113735 -100157709 + AluY SINE Alu 1 306 -5 3024 231 42 1 chr9 42113736 42114456 -100156988 + L1M3 LINE L1 3349 4097 -2049 28 29 0 0 chr9 42114457 42114492 -100156952 + AT_rich Low_complexity Low_complexity 1 35 0 1488 97 97 0 chr9 42114497 42114734 -100156710 - L1MA8 LINE L1 0 6291 6032 3759 139 20 98 chr9 42114736 42114931 -100156513 + L1MA9 LINE L1 5137 5346 -966 2295 63 21 0 chr9 42114931 42115215 -100156229 + AluY SINE Alu 1 290 -21 3759 139 20 98 chr9 42115215 42115978 -100155466 + L1MA9 LINE L1 5346 6019 -293 346 109 0 0 chr9 42115981 42116027 -100155417 + L1M3 LINE L1 4088 4133 -2013 2662 188 34 3 chr9 42116028 42116798 -100154646 + L1M3 LINE L1 5001 5803 -368 247 283 182 75 chr9 42117147 42117306 -100154138 + MER5A DNA MER1_type 3 178 0 1678 183 0 33 chr9 42117567 42117873 -100153571 - AluJb SINE Alu -16 296 1 1850 102 4 23 chr9 42118389 42118645 -100152799 - AluSq SINE Alu -62 251 1 1849 189 132 12 chr9 42119840 42120257 -100151187 - MLT1C LTR MaLR 0 467 1 323 177 94 1 chr9 42120295 42120382 -100151062 - L1MB2 LINE L1 -1 6170 6088 1321 225 112 66 chr9 42120624 42121081 -100150363 + MLT2F LTR ERVL 186 663 0 806 194 0 0 chr9 42121140 42121264 -100150180 + FLAM_C SINE Alu 2 125 -18 3224 232 68 27 chr9 42121270 42122489 -100148955 + L1MEc LINE L1 2037 3268 -2947 2208 115 3 0 chr9 42123297 42123592 -100147852 + AluSx SINE Alu 1 296 -16 288 313 62 51 chr9 42123804 42123918 -100147526 - MER5B DNA MER1_type 0 178 60 2066 123 3 0 chr9 42123918 42124210 -100147234 - AluSx SINE Alu -19 293 1 288 313 62 51 chr9 42124210 42124271 -100147173 - MER5B DNA MER1_type -118 60 1 228 191 79 63 chr9 42124641 42124704 -100146740 - LTR33A LTR ERVL 0 523 460 2349 68 0 0 chr9 42126184 42126495 -100144949 + AluY SINE Alu 1 311 0 650 296 17 6 chr9 42127455 42127634 -100143810 + MLT1J LTR MaLR 10 190 -321 13447 186 18 10 chr9 42127643 42130110 -100141334 + L1PA13 LINE L1 1 2500 -4297 1022 274 98 75 chr9 42130327 42131003 -100140441 - MER21B LTR ERV1 -149 714 24 3553 236 69 32 chr9 42131238 42132118 -100139326 - MER21B-int LTR ERV1 -42 4149 3159 2138 108 0 14 chr9 42132118 42132297 -100139147 - AluSp SINE Alu 0 312 137 2348 79 0 10 chr9 42132297 42132602 -100138842 - AluY SINE Alu -9 302 1 2138 108 0 14 chr9 42132602 42132738 -100138706 - AluSp SINE Alu -175 137 1 3553 236 69 32 chr9 42132738 42133233 -100138211 - MER21B-int LTR ERV1 -1032 3159 2684 2049 208 50 15 chr9 42133357 42133677 -100137767 - L1MB5 LINE L1 -6 6168 5821 1870 154 0 13 chr9 42133677 42134007 -100137437 - AluSx SINE Alu 0 312 1 2049 208 50 15 chr9 42134007 42134152 -100137292 - L1MB5 LINE L1 -353 5821 5683 2101 142 0 3 chr9 42134257 42134566 -100136878 + AluSx SINE Alu 1 308 -4 617 288 71 4 chr9 42135101 42135327 -100136117 - MIR SINE MIR -10 252 12 24 0 0 0 chr9 42135879 42135903 -100135541 + AT_rich Low_complexity Low_complexity 1 24 0 371 288 124 13 chr9 42136199 42136352 -100135092 - MIR SINE MIR -36 226 57 195 219 0 0 chr9 42136567 42136599 -100134845 - L2 LINE L2 -86 3186 3155 325 300 17 17 chr9 42136879 42136999 -100134445 + MIR SINE MIR 38 157 -105 237 269 86 11 chr9 42137117 42137210 -100134234 + MIR3 SINE MIR 81 165 -43 2250 134 50 31 chr9 42137506 42137863 -100133581 + THE1B LTR MaLR 1 364 0 206 100 0 0 chr9 42138221 42138251 -100133193 + (TG)n Simple_repeat Simple_repeat 1 30 0 2488 53 0 3 chr9 42138857 42139159 -100132285 - AluY SINE Alu -10 301 1 241 222 122 61 chr9 42139897 42140029 -100131415 - L1ME LINE L1 -5901 169 30 2521 67 0 6 chr9 42140213 42140555 -100130889 + AluY SINE Alu 1 340 0 2482 56 3 13 chr9 42140686 42140990 -100130454 + AluY SINE Alu 2 302 -9 22 35 0 0 chr9 42142178 42142207 -100129237 + AT_rich Low_complexity Low_complexity 1 29 0 1508 124 5 0 chr9 42143811 42144029 -100127415 + AluSg/x SINE Alu 89 307 -5 1564 209 6 21 chr9 42144039 42144370 -100127074 + L1PB4 LINE L1 5831 6156 0 1821 203 74 37 chr9 42145296 42145783 -100125661 + MLT1D LTR MaLR 1 505 0 279 0 0 0 chr9 42146730 42146761 -100124683 + (TG)n Simple_repeat Simple_repeat 1 31 0 357 322 8 17 chr9 42146816 42146934 -100124510 + L2 LINE L2 2906 3022 -291 1907 198 107 9 chr9 42146969 42147000 -100124444 - MLT2B2 LTR ERVL -11 504 477 291 54 0 0 chr9 42147000 42147037 -100124407 + (TG)n Simple_repeat Simple_repeat 2 38 0 1907 198 107 9 chr9 42147037 42147455 -100123989 - MLT2B2 LTR ERVL -38 477 11 455 281 48 0 chr9 42147471 42147617 -100123827 + L2 LINE L2 3161 3313 0 306 75 0 0 chr9 42147620 42147660 -100123784 - L1P LINE L1 -4370 1776 1737 3488 19 0 0 chr9 42147661 42148037 -100123407 + L1PA2 LINE L1 5780 6155 0 2142 85 0 0 chr9 42148064 42148335 -100123109 - AluY SINE Alu -3 308 38 1435 183 32 61 chr9 42148636 42148948 -100122496 + MLT2B1 LTR ERVL 1 303 -217 2267 96 0 3 chr9 42149394 42149686 -100121758 - AluSc SINE Alu -18 291 1 23 0 0 0 chr9 42149824 42149847 -100121597 + AT_rich Low_complexity Low_complexity 1 23 0 2117 66 0 0 chr9 42150124 42150418 -100121026 - AluY SINE Alu 0 321 28 835 256 41 54 chr9 42150937 42151389 -100120055 + MLT1C LTR MaLR 2 466 -1 191 139 28 0 chr9 42151390 42151426 -100120018 - L2 LINE L2 -31 3241 3205 274 308 30 30 chr9 42151515 42151648 -100119796 - L2 LINE L2 -4 3309 3177 2230 115 0 0 chr9 42152109 42152405 -100119039 + AluSq SINE Alu 1 296 -17 342 205 248 31 chr9 42153945 42154106 -100117338 + L2 LINE L2 3118 3313 0 2728 19 0 19 chr9 42154338 42154654 -100116790 - AluYa5 SINE Alu -1 310 1 317 285 165 45 chr9 42155616 42155816 -100115628 - MIR SINE MIR -19 243 20 726 320 62 49 chr9 42156076 42156464 -100114980 + L1M3d LINE L1 413 805 -5498 198 0 0 0 chr9 42156632 42156654 -100114790 + (T)n Simple_repeat Simple_repeat 1 22 0 4169 229 103 33 chr9 42156899 42157217 -100114227 + L1M3d LINE L1 773 1067 -5315 2225 125 0 22 chr9 42157217 42157537 -100113907 + AluSq SINE Alu 1 313 0 2344 100 0 3 chr9 42157539 42157849 -100113595 + AluY SINE Alu 1 309 -2 4169 229 103 33 chr9 42157849 42159785 -100111659 + L1M3d LINE L1 1067 3123 -3259 2381 73 3 0 chr9 42159785 42160074 -100111370 - AluY SINE Alu -21 290 1 4169 229 103 33 chr9 42160074 42160301 -100111143 + L1M3d LINE L1 3123 3333 -3049 1149 84 0 7 chr9 42160304 42160447 -100110997 + AluY SINE Alu 1 142 -169 799 191 7 0 chr9 42161913 42162065 -100109379 + L1M3d LINE L1 4380 4532 -1850 363 181 0 0 chr9 42162065 42162136 -100109308 + L1MA5A LINE L1 6226 6297 0 25 31 0 0 chr9 42162209 42162241 -100109203 + AT_rich Low_complexity Low_complexity 1 32 0 2387 67 0 7 chr9 42162270 42162567 -100108877 + AluY SINE Alu 1 295 -16 216 0 0 0 chr9 42162984 42163008 -100108436 + (TG)n Simple_repeat Simple_repeat 1 24 0 430 278 43 19 chr9 42163184 42163393 -100108051 - L1ME4a LINE L1 -178 5943 5730 2122 107 24 0 chr9 42163980 42164271 -100107173 - AluSq SINE Alu -15 298 1 202 322 209 11 chr9 42164286 42164463 -100106981 + MIR SINE MIR 51 262 0 211 245 0 0 chr9 42164612 42164661 -100106783 - L2 LINE L2 -1 3312 3264 741 180 64 0 chr9 42164784 42164956 -100106488 + L1MA7 LINE L1 6107 6289 -2 312 183 19 67 chr9 42165480 42165584 -100105860 - LTR41 LTR ERVL -13 760 662 431 207 76 83 chr9 42166291 42166436 -100105008 - MLT1H LTR MaLR -2 547 404 1429 221 45 40 chr9 42167207 42167606 -100103838 + MLT1C LTR MaLR 59 459 -8 479 243 132 21 chr9 42168196 42168431 -100103013 + MLT1C LTR MaLR 4 264 -203 1340 133 9 14 chr9 42170034 42170252 -100101192 + L1PB3 LINE L1 5933 6149 -5 2141 171 16 5 chr9 42170670 42171056 -100100388 + MLT1B LTR MaLR 1 390 0 2415 100 0 0 chr9 42171080 42171391 -100100053 + AluY SINE Alu 1 311 0 1179 164 0 0 chr9 42171391 42171574 -100099870 + AluSg/x SINE Alu 130 312 0 3543 60 44 6 chr9 42171858 42172337 -100099107 - L1PA8 LINE L1 -1 6171 5675 1341 226 43 3 chr9 42172337 42172638 -100098806 + MER65C LTR ERV1 37 349 -112 1008 146 20 0 chr9 42172642 42172793 -100098651 - LTR12 LTR ERV1 -232 482 329 * 6268 141 1 9 chr9 42172790 42173823 -100097621 - HERV9 LTR ERV1 -7235 1164 55 557 129 16 132 chr9 42173806 42173937 -100097507 - pTR5 LTR ERV1 -130 584 337 * 2394 84 3 31 chr9 42173937 42174257 -100097187 - AluY SINE Alu 0 311 1 557 129 16 132 chr9 42174257 42174282 -100097162 - pTR5 LTR ERV1 -377 337 311 317 304 16 0 chr9 42174283 42174408 -100097036 - LTR30 LTR ERV1 -79 643 517 1215 118 5 62 chr9 42174408 42174619 -100096825 - LTR12 LTR ERV1 -463 251 53 238 250 0 0 chr9 42174619 42174671 -100096773 - LTR30 LTR ERV1 -670 52 1 440 236 0 0 chr9 42174671 42174760 -100096684 + LTR51 LTR ERV1 583 671 0 242 252 32 81 chr9 42176069 42176192 -100095252 + MIR SINE MIR 141 257 -5 385 264 104 0 chr9 42176429 42176554 -100094890 - MIR SINE MIR -35 227 90 2462 173 58 0 chr9 42179315 42179742 -100091702 + MER70A LTR ERVL 1 452 -20 21 71 0 0 chr9 42180214 42180256 -100091188 + AT_rich Low_complexity Low_complexity 1 42 0 2198 129 0 0 chr9 42180256 42180559 -100090885 - AluSq SINE Alu -10 303 1 2552 47 3 0 chr9 42181328 42181629 -100089815 + AluY SINE Alu 1 302 -9 2183 92 0 33 chr9 42181904 42182210 -100089234 + AluSx SINE Alu 1 296 -16 224 241 0 0 chr9 42182748 42182802 -100088642 + (TA)n Simple_repeat Simple_repeat 1 54 0 793 135 16 0 chr9 42283297 42283423 -99988021 - FLAM_C SINE Alu 0 143 16 1931 133 20 0 chr9 42283454 42283748 -99987696 - AluSx SINE Alu -12 300 1 2651 23 0 0 chr9 42283996 42284299 -99987145 + AluY SINE Alu 3 305 -6 869 166 0 6 chr9 42284391 42284554 -99986890 - AluSc SINE Alu -15 294 133 22 35 0 0 chr9 42285265 42285294 -99986150 + GC_rich Low_complexity Low_complexity 1 29 0 2088 99 7 0 chr9 42286218 42286501 -99984943 - AluSg SINE Alu -21 289 5 1997 115 3 10 chr9 42286709 42287013 -99984431 - AluSx SINE Alu -9 303 2 811 167 100 0 chr9 42287014 42287164 -99984280 - FRAM SINE Alu -1 165 1 2145 98 0 0 chr9 42288774 42289069 -99982375 - AluSg1 SINE Alu -14 295 1 2230 98 0 3 chr9 42289392 42289697 -99981747 - AluY SINE Alu -7 304 1 1966 97 15 0 chr9 42289697 42289966 -99981478 - AluSq SINE Alu -17 296 24 2131 95 0 48 chr9 42290073 42290220 -99981224 + AluSx SINE Alu 1 127 -185 2423 57 0 3 chr9 42290220 42290520 -99980924 + AluY SINE Alu 1 299 -12 2131 95 0 48 chr9 42290520 42290688 -99980756 + AluSx SINE Alu 127 301 -11 2392 71 0 3 chr9 42290688 42290996 -99980448 + AluY SINE Alu 1 307 -4 1824 153 27 0 chr9 42291196 42291491 -99979953 + AluSx SINE Alu 2 304 -8 185 333 40 20 chr9 42291535 42291634 -99979810 + MIR SINE MIR 37 137 -71 330 342 18 0 chr9 42291642 42291753 -99979691 - L1MC4 LINE L1 -100 7942 7830 1208 169 138 4 chr9 42291784 42292045 -99979399 + AluJo SINE Alu 1 296 -16 2156 97 3 26 chr9 42292045 42292352 -99979092 + AluSp SINE Alu 1 301 -12 1662 164 33 13 chr9 42292519 42292818 -99978626 - AluJb SINE Alu -7 305 1 1929 116 46 0 chr9 42292905 42293189 -99978255 + AluSx SINE Alu 1 297 -15 2106 101 14 0 chr9 42293207 42293493 -99977951 + AluSc SINE Alu 7 296 -13 818 154 0 29 chr9 42293662 42293798 -99977646 + FRAM SINE Alu 19 150 -26 1723 170 13 3 chr9 42293809 42294143 -99977301 + AluJb SINE Alu 1 312 0 5133 111 26 51 chr9 42294143 42294227 -99977217 + L1MA4A LINE L1 5361 5446 -857 1946 104 7 37 chr9 42294227 42294365 -99977079 + AluSx SINE Alu 6 147 -165 2287 75 3 0 chr9 42294365 42294660 -99976784 + AluY SINE Alu 1 296 -15 1946 104 7 37 chr9 42294660 42294819 -99976625 + AluSx SINE Alu 147 294 -18 5133 111 26 51 chr9 42294819 42294919 -99976525 + L1MA4A LINE L1 5446 5547 -756 2303 100 3 0 chr9 42294919 42295228 -99976216 + AluSp SINE Alu 1 310 -3 5133 111 26 51 chr9 42295228 42295329 -99976115 + L1MA4A LINE L1 5547 5649 -654 1947 143 3 0 chr9 42295329 42295629 -99975815 + AluSq SINE Alu 1 301 -12 5133 111 26 51 chr9 42295629 42296298 -99975146 + L1MA4A LINE L1 5649 6293 -10 2150 122 0 0 chr9 42296300 42296611 -99974833 - AluSx SINE Alu -1 311 1 1826 166 3 0 chr9 42296614 42296910 -99974534 - AluSx SINE Alu -15 297 1 24 32 0 0 chr9 42296910 42296941 -99974503 + AT_rich Low_complexity Low_complexity 1 31 0 35 41 0 0 chr9 42297040 42297089 -99974355 + AT_rich Low_complexity Low_complexity 1 49 0 2061 57 4 4 chr9 42297668 42297931 -99973513 + AluSp SINE Alu 1 263 -50 494 113 0 0 chr9 42297931 42298002 -99973442 + AluSp/q SINE Alu 229 299 -14 1661 142 45 3 chr9 42298003 42298292 -99973152 + AluJo SINE Alu 1 301 -11 324 107 36 0 chr9 42300050 42300152 -99971292 + Alu SINE Alu 226 329 0 342 273 55 9 chr9 42300169 42300279 -99971165 - MIR SINE MIR -40 222 108 249 33 0 0 chr9 42301171 42301201 -99970243 + (A)n Simple_repeat Simple_repeat 1 30 0 423 100 17 0 chr9 42301450 42301510 -99969934 + AluJo SINE Alu 39 99 -213 1077 155 0 84 chr9 42301555 42301742 -99969702 + AluJo SINE Alu 99 265 -47 2174 113 3 0 chr9 42301742 42302044 -99969400 - AluSx SINE Alu -9 303 1 1077 155 0 84 chr9 42302044 42302082 -99969362 + AluJo SINE Alu 265 305 -7 1981 135 10 0 chr9 42302085 42302382 -99969062 + AluSx SINE Alu 6 305 -7 336 295 173 0 chr9 42302413 42302552 -99968892 + MIR SINE MIR 94 256 -6 180 219 0 0 chr9 42302523 42302564 -99968880 + L2 LINE L2 3273 3313 0 * 267 330 11 0 chr9 42302640 42302731 -99968713 - MIR SINE MIR -68 140 49 865 225 0 0 chr9 42302879 42303057 -99968387 - AluJb SINE Alu -6 306 129 1998 133 10 3 chr9 42303076 42303376 -99968068 + AluJb SINE Alu 2 303 -9 191 380 16 16 chr9 42303387 42303508 -99967936 - L2 LINE L2 -7 3306 3186 * 207 235 88 15 chr9 42303477 42303545 -99967899 - L2 LINE L2 0 3272 3200 185 284 170 50 chr9 42303590 42303731 -99967713 - L2 LINE L2 -172 3100 2943 2110 82 0 7 chr9 42303763 42304042 -99967402 + AluSx SINE Alu 35 311 -1 281 370 69 14 chr9 42304050 42304339 -99967105 - L2 LINE L2 -456 2858 2554 310 321 71 63 chr9 42304672 42305148 -99966296 - L2 LINE L2 -7 3306 2827 1607 185 28 0 chr9 42305234 42305520 -99965924 - AluJb SINE Alu -18 294 1 473 189 24 39 chr9 42305563 42305690 -99965754 - L1MB3 LINE L1 0 6183 6059 2131 110 0 10 chr9 42305691 42305991 -99965453 - AluSg SINE Alu -13 297 1 877 135 15 0 chr9 42306018 42306151 -99965293 - FRAM SINE Alu -22 154 20 2130 125 0 0 chr9 42306360 42306657 -99964787 - AluSg SINE Alu -13 297 1 334 330 19 9 chr9 42306661 42306767 -99964677 - MIR3 SINE MIR -101 107 1 2049 123 0 10 chr9 42307016 42307337 -99964107 - AluSq SINE Alu 0 313 1 1696 138 8 0 chr9 42307337 42307605 -99963839 - AluSx SINE Alu -8 304 35 433 154 0 0 chr9 42307726 42307791 -99963653 + AluSp/q SINE Alu 223 287 -26 2224 82 0 3 chr9 42307803 42308094 -99963350 + AluSq SINE Alu 1 290 -23 256 172 31 31 chr9 42308110 42308174 -99963270 + A-rich Low_complexity Low_complexity 1 64 0 2362 77 0 0 chr9 42308182 42308482 -99962962 + AluSc SINE Alu 2 301 -8 2233 105 0 3 chr9 42308792 42309098 -99962346 - AluSx SINE Alu -7 305 1 2322 78 3 3 chr9 42309933 42310242 -99961202 - AluSc SINE Alu 0 309 1 1505 131 113 22 chr9 42310243 42310517 -99960927 - AluSx SINE Alu -13 299 1 641 193 8 0 chr9 42310686 42310805 -99960639 - FLAM_A SINE Alu -4 138 19 1581 197 151 28 chr9 42310890 42311094 -99960350 + LTR2B LTR ERV1 7 185 -305 186 43 0 0 chr9 42311094 42311117 -99960327 + (TCCTG)n Simple_repeat Simple_repeat 2 24 0 1581 197 151 28 chr9 42311117 42311343 -99960101 + LTR2B LTR ERV1 185 490 0 2057 110 7 10 chr9 42311734 42312042 -99959402 - AluSx SINE Alu 0 312 6 1252 157 20 142 chr9 42313387 42313559 -99957885 - AluJo SINE Alu 0 302 191 1605 149 4 15 chr9 42313559 42313718 -99957726 - AluSq SINE Alu -20 293 137 2289 66 0 13 chr9 42313718 42314020 -99957424 - AluY SINE Alu -13 298 1 1605 149 4 15 chr9 42314020 42314122 -99957322 - AluSq SINE Alu -176 137 35 1252 157 20 142 chr9 42314122 42314293 -99957151 - AluJo SINE Alu -111 191 1 22 35 0 0 chr9 42316004 42316033 -99955411 + AT_rich Low_complexity Low_complexity 1 29 0 1508 179 7 14 chr9 42316069 42316378 -99955066 - AluJb SINE Alu 0 307 1 1003 122 0 0 chr9 42316403 42316542 -99954902 - AluSq SINE Alu -29 284 146 437 274 58 59 chr9 42316591 42316958 -99954486 + Charlie8 DNA MER1_type 33 381 -2036 226 328 0 0 chr9 42316964 42317031 -99954413 + Charlie8 DNA MER1_type 1345 1411 -1006 284 267 0 0 chr9 42317451 42317511 -99953933 - MIR SINE MIR -122 140 81 2264 116 0 0 chr9 42318293 42318603 -99952841 - AluSx SINE Alu -2 310 1 995 98 0 0 chr9 42318605 42318738 -99952706 - AluSq/x SINE Alu -179 133 1 2375 82 0 9 chr9 42319071 42319387 -99952057 - AluSq SINE Alu 0 313 1 2148 106 0 0 chr9 42319642 42319925 -99951519 + AluSq SINE Alu 1 283 -30 2344 75 0 13 chr9 42319926 42320234 -99951210 + AluY SINE Alu 1 304 -7 23 0 0 0 chr9 42320249 42320272 -99951172 + AT_rich Low_complexity Low_complexity 1 23 0 940 192 30 30 chr9 42320448 42320677 -99950767 - AluJo SINE Alu 0 310 82 686 182 50 0 chr9 42320695 42320816 -99950628 - FLAM_C SINE Alu -5 128 2 851 207 12 12 chr9 42320841 42320967 -99950477 + AluJb SINE Alu 2 130 -182 2276 101 0 3 chr9 42320967 42321275 -99950169 + AluSc SINE Alu 1 307 -2 851 207 12 12 chr9 42321275 42321317 -99950127 + AluJb SINE Alu 129 170 -142 1091 122 0 0 chr9 42321509 42321665 -99949779 - AluJb SINE Alu -24 288 133 356 306 66 0 chr9 42321907 42322028 -99949416 + L2 LINE L2 3182 3310 -3 2554 84 40 13 chr9 42322116 42322561 -99948883 + LTR21A LTR ERV1 1 490 -15 2613 97 156 97 chr9 42322561 42322599 -99948845 + HERVFH21 LTR ERV1 5 39 -6490 183 42 0 0 chr9 42322599 42322623 -99948821 + (CTCA)n Simple_repeat Simple_repeat 2 25 0 2613 97 156 97 chr9 42322623 42323043 -99948401 + HERVFH21 LTR ERV1 39 511 -6018 2544 47 0 0 chr9 42323043 42323342 -99948102 - AluY SINE Alu -12 299 1 2613 97 156 97 chr9 42323342 42323499 -99947945 + HERVFH21 LTR ERV1 511 657 -5872 1658 194 71 49 chr9 42323516 42323708 -99947736 + LTR2B LTR ERV1 32 218 -272 2402 64 0 0 chr9 42323708 42324003 -99947441 + AluY SINE Alu 1 295 -16 1658 194 71 49 chr9 42324003 42324259 -99947185 + LTR2B LTR ERV1 218 490 0 8399 156 3 27 chr9 42324259 42325939 -99945505 + HERVFH21 LTR ERV1 652 2291 -4238 3992 92 19 3 chr9 42325937 42326554 -99944890 + HERVFH21 LTR ERV1 3075 3701 -2828 * 1486 93 0 0 chr9 42326580 42326773 -99944671 - AluSx SINE Alu -119 193 1 2042 83 0 0 chr9 42326773 42327074 -99944370 + HERVFH21 LTR ERV1 3685 3985 -2544 7500 144 12 7 chr9 42327234 42328673 -99942771 + HERVFH21 LTR ERV1 5344 6529 0 2542 93 47 7 chr9 42328673 42329120 -99942324 + LTR21A LTR ERV1 1 497 -8 1647 173 116 31 chr9 42329383 42329806 -99941638 + LTR2B LTR ERV1 32 490 0 2009 115 3 14 chr9 42329807 42330102 -99941342 - AluSx SINE Alu -20 292 1 2379 87 3 0 chr9 42330116 42330428 -99941016 - AluSp SINE Alu 0 313 1 2078 122 0 0 chr9 42330428 42330723 -99940721 - AluSx SINE Alu -16 296 2 2242 101 3 0 chr9 42331989 42332287 -99939157 + AluSq SINE Alu 1 299 -14 2405 73 0 3 chr9 42332309 42332611 -99938833 + AluY SINE Alu 1 301 -10 2379 87 0 3 chr9 42333114 42333423 -99938021 + AluY SINE Alu 1 308 -3 2207 107 0 0 chr9 42333825 42334125 -99937319 + AluSp SINE Alu 2 301 -12 270 336 56 8 chr9 42334471 42334596 -99936848 + MER34 LTR ERV1 352 482 -60 555 219 18 0 chr9 42334596 42334710 -99936734 - FLAM_C SINE Alu -8 135 20 553 119 0 30 chr9 42335194 42335295 -99936149 + MER4A LTR ERV1 1 98 -566 * 1267 148 53 74 chr9 42335291 42335648 -99935796 + MER4A LTR ERV1 257 664 0 1333 144 40 107 chr9 42336923 42337249 -99934195 - AluJo SINE Alu -8 304 1 2314 99 0 3 chr9 42338697 42339010 -99932434 - AluSq SINE Alu -1 312 1 1587 189 10 7 chr9 42339059 42339361 -99932083 - AluJb SINE Alu -3 309 7 479 262 94 71 chr9 42339395 42339768 -99931676 + Charlie8 DNA MER1_type 11 381 -2036 2190 91 0 26 chr9 42340746 42341053 -99930391 + AluSc SINE Alu 1 299 -10 180 354 0 0 chr9 42341063 42341111 -99930333 + MER5B DNA MER1_type 63 110 -68 2164 92 0 10 chr9 42342305 42342600 -99928844 - AluSg SINE Alu -14 296 5 206 180 0 40 chr9 42344114 42344164 -99927280 + G-rich Low_complexity Low_complexity 1 48 0 24 53 0 0 chr9 42344252 42344290 -99927154 + GC_rich Low_complexity Low_complexity 1 38 0 1949 108 87 0 chr9 42347032 42347319 -99924125 - AluSx SINE Alu 0 312 1 1696 168 3 23 chr9 42347321 42347631 -99923813 - AluJo SINE Alu -8 304 1 224 276 153 10 chr9 42347702 42347800 -99923644 - L2 LINE L2 -17 3255 3144 2082 100 45 0 chr9 42347906 42348197 -99923247 - AluSx SINE Alu -8 304 1 319 343 90 60 chr9 42348233 42348722 -99922722 - L2 LINE L2 -2 3270 2771 335 319 37 7 chr9 42349048 42349190 -99922254 - MIR SINE MIR -65 143 21 2247 99 0 0 chr9 42349455 42349749 -99921695 - AluSx SINE Alu -17 295 2 2150 92 3 0 chr9 42349757 42350072 -99921372 - AluSp SINE Alu 0 316 1 581 328 39 27 chr9 42350081 42350337 -99921107 + L2 LINE L2 2992 3250 -22 183 275 22 163 chr9 42350370 42350439 -99921005 + MIR3 SINE MIR 56 86 -122 1723 163 3 3 chr9 42350439 42350722 -99920722 - AluJb SINE Alu -29 283 1 183 275 22 163 chr9 42350722 42350830 -99920614 + MIR3 SINE MIR 86 208 0 222 278 40 66 chr9 42351308 42351459 -99919985 + L2 LINE L2 2857 3003 -310 1026 151 13 0 chr9 42351478 42351637 -99919807 - FRAM SINE Alu -16 160 1 2053 123 3 0 chr9 42351648 42351933 -99919511 - AluSx SINE Alu -26 286 1 2165 109 6 3 chr9 42352396 42352707 -99918737 - AluSx SINE Alu 0 312 1 1727 150 3 26 chr9 42353400 42353706 -99917738 - AluJo SINE Alu -13 299 1 417 335 94 28 chr9 42354059 42354346 -99917098 + L2 LINE L2 2919 3224 -48 2150 122 0 0 chr9 42354346 42354642 -99916802 + AluSx SINE Alu 2 297 -15 2214 114 0 0 chr9 42354888 42355185 -99916259 - AluSx SINE Alu -15 297 1 197 363 99 20 chr9 42355273 42355565 -99915879 - L2 LINE L2 -431 2883 2569 2386 100 0 0 chr9 42355750 42356061 -99915383 + AluSx SINE Alu 1 311 -1 1721 138 0 62 chr9 42356151 42356298 -99915146 + AluSq SINE Alu 1 123 -190 2386 77 0 0 chr9 42356298 42356595 -99914849 + AluSg SINE Alu 1 297 -13 1721 138 0 62 chr9 42356595 42356738 -99914706 + AluSq SINE Alu 123 273 -40 238 286 211 32 chr9 42357174 42357359 -99914085 - MIR SINE MIR -36 226 9 2209 104 0 10 chr9 42357872 42358179 -99913265 + AluSx SINE Alu 1 304 -8 2111 130 0 0 chr9 42358267 42358568 -99912876 - AluSx SINE Alu -11 301 1 602 281 30 4 chr9 42358776 42359074 -99912370 + MER87 LTR ERV1 209 541 0 244 257 0 124 chr9 42359086 42359199 -99912245 + L2 LINE L2 3085 3183 -89 508 361 23 18 chr9 42359286 42359505 -99911939 + MIR SINE MIR 28 247 -15 278 311 137 31 chr9 42360083 42360244 -99911200 - MIR SINE MIR -70 192 15 1504 166 41 51 chr9 42360693 42360819 -99910625 + AluJo SINE Alu 1 127 -185 1743 189 0 0 chr9 42360819 42361116 -99910328 - AluJo SINE Alu -15 297 1 1504 166 41 51 chr9 42361116 42361284 -99910160 + AluJo SINE Alu 127 292 -20 347 390 0 0 chr9 42361302 42361420 -99910024 + L1ME LINE L1 5701 5818 -303 327 318 58 76 chr9 42361435 42361658 -99909786 - MIR SINE MIR -11 251 33 2098 141 3 3 chr9 42361666 42361978 -99909466 - AluSx SINE Alu 0 312 1 1565 164 9 97 chr9 42361994 42362324 -99909120 - AluJo SINE Alu 0 302 2 2391 82 3 0 chr9 42362360 42362663 -99908781 + AluSq SINE Alu 1 304 -9 1145 80 0 13 chr9 42362524 42362665 -99908779 + AluSp/q SINE Alu 166 306 -7 2585 64 0 10 chr9 42362665 42362979 -99908465 + AluY SINE Alu 1 311 0 460 172 44 1 chr9 42362983 42363085 -99908359 + L1MB3 LINE L1 5725 5829 -354 * 787 169 0 0 chr9 42363086 42363204 -99908240 + FLAM_C SINE Alu 1 118 -15 2115 112 0 58 chr9 42363210 42363385 -99908059 - AluSx SINE Alu -17 295 144 2644 39 7 3 chr9 42363385 42363695 -99907749 - AluY SINE Alu 0 311 1 2115 112 0 58 chr9 42363695 42363832 -99907612 - AluSx SINE Alu -168 144 1 2604 39 19 19 chr9 42364284 42364595 -99906849 - AluY SINE Alu 0 311 1 2412 103 0 0 chr9 42364595 42364895 -99906549 - AluSx SINE Alu -12 300 1 1563 180 36 20 chr9 42364971 42365277 -99906167 - AluJo SINE Alu -1 311 1 208 254 28 14 chr9 42365281 42365352 -99906092 - MIR SINE MIR -66 142 71 2072 126 10 17 chr9 42365836 42366138 -99905306 - AluSx SINE Alu -12 300 1 1457 149 12 32 chr9 42366143 42366391 -99905053 - AluJo SINE Alu -8 304 62 1064 129 34 0 chr9 42366391 42366538 -99904906 - AluSq/x SINE Alu -160 152 1 294 176 154 22 chr9 42366913 42367004 -99904440 - MER117 DNA MER1_type -49 148 46 205 276 69 52 chr9 42367095 42367211 -99904233 - MIR SINE MIR -26 236 119 565 179 6 31 chr9 42367213 42367375 -99904069 + CT-rich Low_complexity Low_complexity 4 161 0 205 296 42 14 chr9 42367475 42367546 -99903898 - MIR SINE MIR -188 74 2 349 259 59 15 chr9 42367612 42367747 -99903697 + L1MC5 LINE L1 7785 7925 -36 2053 143 0 16 chr9 42367757 42368065 -99903379 + AluSx SINE Alu 1 303 -9 2347 107 0 3 chr9 42368107 42368406 -99903038 - AluSq SINE Alu -15 298 1 2703 43 0 0 chr9 42368450 42368754 -99902690 - AluY SINE Alu -7 304 1 1929 139 31 7 chr9 42368825 42369112 -99902332 - AluJo SINE Alu -18 294 1 2320 118 0 3 chr9 42369270 42369576 -99901868 - AluSp SINE Alu -8 305 1 21 36 0 0 chr9 42369580 42369608 -99901836 + AT_rich Low_complexity Low_complexity 1 28 0 1897 142 0 77 chr9 42369725 42369851 -99901593 + AluJo SINE Alu 2 136 -176 2223 85 53 0 chr9 42369851 42370133 -99901311 - AluSq SINE Alu -16 297 1 1897 142 0 77 chr9 42370133 42370343 -99901101 + AluJo SINE Alu 136 312 0 692 194 0 8 chr9 42370352 42370481 -99900963 + FLAM_A SINE Alu 1 128 -5 2345 85 0 0 chr9 42370484 42370818 -99900626 + AluSx SINE Alu 1 334 0 2072 107 0 77 chr9 42370821 42371135 -99900309 + AluSx SINE Alu 1 291 -21 699 99 0 0 chr9 42371135 42371236 -99900208 + (TA)n Simple_repeat Simple_repeat 2 102 0 2072 107 0 77 chr9 42371236 42371248 -99900196 + AluSx SINE Alu 291 302 -10 196 307 91 11 chr9 42371272 42371360 -99900084 - MIR SINE MIR -108 154 60 1860 169 3 10 chr9 42371981 42372283 -99899161 - AluJo SINE Alu -12 300 1 732 201 26 0 chr9 42372460 42372614 -99898830 - FRAM SINE Alu -8 158 1 1221 101 48 0 chr9 42372640 42372808 -99898636 - AluSg SINE Alu -95 215 40 480 137 14 0 chr9 42372863 42372936 -99898508 - AluS SINE Alu -237 75 2 1565 167 40 63 chr9 42372939 42373122 -99898322 - AluJb SINE Alu -16 296 121 2287 104 3 7 chr9 42373122 42373421 -99898023 + AluSx SINE Alu 1 298 -14 1565 167 40 63 chr9 42373421 42373536 -99897908 - AluJb SINE Alu -191 121 5 2474 58 3 0 chr9 42373544 42373837 -99897607 - AluY SINE Alu -17 294 1 245 118 0 0 chr9 42373888 42373922 -99897522 - Alu SINE Alu -265 34 1 24 0 0 0 chr9 42373931 42373955 -99897489 + AT_rich Low_complexity Low_complexity 1 24 0 1840 169 0 22 chr9 42373955 42374274 -99897170 + AluJo SINE Alu 1 312 0 1983 123 0 75 chr9 42375031 42375349 -99896095 - AluJo SINE Alu -14 298 5 981 106 8 0 chr9 42375444 42375576 -99895868 + AluSq/x SINE Alu 3 135 -177 2342 97 0 3 chr9 42375576 42375874 -99895570 + AluSx SINE Alu 1 297 -15 290 287 152 0 chr9 42376291 42376455 -99894989 + MIR SINE MIR 51 239 -23 2254 113 0 7 chr9 42376992 42377293 -99894151 - AluSx SINE Alu -13 299 1 2272 90 10 0 chr9 42377327 42377660 -99893784 + AluY SINE Alu 3 338 0 1929 159 3 10 chr9 42377720 42378021 -99893423 + AluJo SINE Alu 1 299 -13 2386 46 43 0 chr9 42378063 42378343 -99893101 + AluY SINE Alu 2 293 -18 2337 89 7 3 chr9 42378354 42378658 -99892786 + AluSx SINE Alu 1 305 -7 444 289 14 35 chr9 42378965 42379107 -99892337 + MIR SINE MIR 8 146 -116 821 230 0 0 chr9 42379110 42379271 -99892173 + AluJb SINE Alu 137 297 -15 248 234 16 16 chr9 42379273 42379337 -99892107 + MIR SINE MIR 151 214 -48 201 250 0 0 chr9 42379402 42379450 -99891994 + (TATATG)n Simple_repeat Simple_repeat 3 50 0 2247 115 7 3 chr9 42379480 42379785 -99891659 - AluSx SINE Alu -6 306 1 567 179 0 0 chr9 42379824 42379919 -99891525 - AluJb SINE Alu -84 228 134 1904 95 0 8 chr9 42379919 42380161 -99891283 - AluSx SINE Alu -14 298 59 2120 221 25 41 chr9 42380226 42380657 -99890787 - MER74B LTR ERVL 0 622 186 2364 102 0 3 chr9 42380657 42380961 -99890483 - AluSx SINE Alu -9 303 1 2043 139 0 0 chr9 42380964 42381252 -99890192 - AluSx SINE Alu -24 288 1 2120 221 25 41 chr9 42381252 42381376 -99890068 - MER74B LTR ERVL -438 184 72 1077 189 0 0 chr9 42382009 42382178 -99889266 - AluJb SINE Alu -10 302 134 2213 97 33 10 chr9 42382178 42382478 -99888966 - AluSx SINE Alu -5 307 1 324 313 125 14 chr9 42382483 42382691 -99888753 + L2 LINE L2 2310 2540 -774 1221 135 0 0 chr9 42382691 42382861 -99888583 - FRAM SINE Alu -10 166 1 2106 127 0 39 chr9 42382888 42383195 -99888249 + AluSx SINE Alu 1 295 -17 2124 102 11 7 chr9 42383195 42383501 -99887943 + AluSx SINE Alu 1 308 0 1149 163 99 10 chr9 42383513 42383715 -99887729 + AluJo SINE Alu 1 220 -92 1425 76 0 0 chr9 42383741 42383912 -99887532 - AluY SINE Alu -8 303 133 1035 175 0 0 chr9 42383946 42384112 -99887332 + FRAM SINE Alu 1 166 0 262 278 156 20 chr9 42384114 42384368 -99887076 + L2 LINE L2 2741 3029 -243 27 73 0 0 chr9 42384380 42384435 -99887009 + AT_rich Low_complexity Low_complexity 1 55 0 1020 104 15 0 chr9 42384481 42384616 -99886828 - AluSq SINE Alu -12 301 165 485 139 0 0 chr9 42384616 42384688 -99886756 - AluSq SINE Alu -239 73 2 1723 140 52 65 chr9 42385074 42385382 -99886062 + AluJo SINE Alu 1 304 -8 2212 80 12 86 chr9 42385384 42385720 -99885724 + AluY SINE Alu 1 311 0 386 156 26 0 chr9 42385722 42385799 -99885645 + G-rich Low_complexity Low_complexity 5 83 0 293 115 0 19 chr9 42385788 42385840 -99885604 + (GGAA)n Simple_repeat Simple_repeat 1 51 0 * 2338 78 4 0 chr9 42385980 42386298 -99885146 - AluSx SINE Alu 0 319 1 2189 120 3 7 chr9 42386299 42386608 -99884836 - AluSx SINE Alu -4 308 1 253 309 74 0 chr9 42387619 42387700 -99883744 + L2 LINE L2 3136 3222 -50 341 43 0 0 chr9 42387740 42387787 -99883657 + U7 snRNA snRNA 2 48 -15 25 0 0 0 chr9 42387806 42387831 -99883613 + AT_rich Low_complexity Low_complexity 1 25 0 1602 149 0 0 chr9 42387877 42388112 -99883332 + AluJo SINE Alu 70 304 -8 1255 206 29 19 chr9 42388307 42388623 -99882821 + L2 LINE L2 2575 2893 -421 558 168 9 18 chr9 42388625 42388738 -99882706 - AluJo/FRAM SINE Alu 0 312 201 2269 116 0 10 chr9 42388740 42389051 -99882393 + AluSq SINE Alu 1 308 -5 384 200 7 12 chr9 42389059 42389181 -99882263 - AluJ/FLAM SINE Alu -223 79 21 2242 97 23 0 chr9 42389564 42389738 -99881706 - AluSq SINE Alu -7 306 121 374 0 22 0 chr9 42389738 42389784 -99881660 + (TG)n Simple_repeat Simple_repeat 2 48 0 2242 97 23 0 chr9 42389784 42389908 -99881536 - AluSq SINE Alu -192 121 1 1860 164 7 0 chr9 42389919 42390211 -99881233 - AluJo SINE Alu -18 294 1 1675 158 49 18 chr9 42390693 42390978 -99880466 + AluJo SINE Alu 1 294 -18 2182 105 40 0 chr9 42390979 42391275 -99880169 + AluSq SINE Alu 1 308 -5 237 277 0 15 chr9 42391383 42391448 -99879996 + LTR67 LTR ERVL 490 553 -4 2592 71 3 0 chr9 42392192 42392502 -99878942 - AluY SINE Alu 0 311 1 201 133 0 0 chr9 42392521 42392551 -99878893 + (TCCCC)n Simple_repeat Simple_repeat 1 30 0 2327 104 10 0 chr9 42392557 42392864 -99878580 - AluSg SINE Alu 0 310 1 460 170 37 15 chr9 42392866 42393001 -99878443 + CT-rich Low_complexity Low_complexity 3 140 0 1627 166 30 4 chr9 42393012 42393277 -99878167 - AluJb SINE Alu -5 307 36 1546 144 84 40 chr9 42393350 42393648 -99877796 - AluJo SINE Alu -1 311 1 466 260 39 11 chr9 42393806 42393982 -99877462 + MIR SINE MIR 20 196 -65 2388 97 0 3 chr9 42393985 42394285 -99877159 + AluSq SINE Alu 1 299 -14 381 154 110 0 chr9 42394286 42394377 -99877067 + MER113 DNA MER1_type? 1 101 -420 1911 133 32 39 chr9 42394594 42394652 -99876792 + AluJb SINE Alu 2 59 -253 2288 71 3 3 chr9 42394652 42394934 -99876510 - AluY SINE Alu -14 297 16 1911 133 32 39 chr9 42394934 42395184 -99876260 + AluJb SINE Alu 59 308 -4 2036 126 0 43 chr9 42395747 42396073 -99875371 + AluSq SINE Alu 1 312 -1 221 258 194 24 chr9 42397342 42397466 -99873978 - MIR3 SINE MIR -61 147 3 2069 138 3 7 chr9 42397466 42397770 -99873674 - AluSx SINE Alu -9 303 1 313 211 26 0 chr9 42398437 42398513 -99872931 + L1ME4a LINE L1 5750 5827 -1981 608 180 7 65 chr9 42398656 42398795 -99872649 + FLAM_C SINE Alu 1 131 -2 3590 159 22 112 chr9 42398797 42398897 -99872547 + L1MB7 LINE L1 5217 5324 -860 1909 149 20 10 chr9 42398897 42399198 -99872246 - AluJb SINE Alu -6 306 3 3590 159 22 112 chr9 42399198 42399219 -99872225 + L1MB7 LINE L1 5324 5345 -839 591 80 0 116 chr9 42399219 42399297 -99872147 - HY3 scRNA scRNA -2 99 36 2292 103 0 3 chr9 42399297 42399589 -99871855 + AluSx SINE Alu 1 291 -21 591 80 0 116 chr9 42399589 42399622 -99871822 - HY3 scRNA scRNA -65 36 1 3590 159 22 112 chr9 42399622 42399901 -99871543 + L1MB7 LINE L1 5345 5648 -536 1869 157 26 3 chr9 42399901 42400206 -99871238 - AluJb SINE Alu 0 312 1 3590 159 22 112 chr9 42400206 42400234 -99871210 + L1MB7 LINE L1 5648 5677 -507 2090 136 14 0 chr9 42400234 42400529 -99870915 + AluSx SINE Alu 1 299 -13 3590 159 22 112 chr9 42400529 42400769 -99870675 + L1MB7 LINE L1 5677 5937 -247 2310 98 0 0 chr9 42400769 42401056 -99870388 + AluSx SINE Alu 11 297 -15 3590 159 22 112 chr9 42401056 42401344 -99870100 + L1MB7 LINE L1 5937 6106 -78 2070 128 0 10 chr9 42401344 42401632 -99869812 - AluJb SINE Alu -14 298 14 3590 159 22 112 chr9 42401632 42401690 -99869754 + L1MB7 LINE L1 6106 6168 -16 387 248 223 6 chr9 42401698 42401855 -99869589 + L1ME4a LINE L1 5928 6118 -3 2294 116 0 0 chr9 42401858 42402159 -99869285 + AluSx SINE Alu 6 306 -6 2286 94 9 31 chr9 42402161 42402480 -99868964 + AluSp SINE Alu 1 312 -1 1713 168 0 21 chr9 42402484 42402770 -99868674 + AluJo SINE Alu 1 280 -32 198 0 0 0 chr9 42402777 42402799 -99868645 + (CAAA)n Simple_repeat Simple_repeat 4 25 0 2648 53 0 0 chr9 42403185 42403487 -99867957 - AluY SINE Alu -9 302 1 2293 114 10 0 chr9 42403586 42403893 -99867551 + AluSx SINE Alu 1 310 -2 4666 186 30 14 chr9 42504084 42505880 -99765564 - L1PB3 LINE L1 -55 6099 4280 282 29 0 0 chr9 42506057 42506092 -99765352 + (TG)n Simple_repeat Simple_repeat 2 36 0 222 220 17 0 chr9 42506092 42506151 -99765293 + CT-rich Low_complexity Low_complexity 2 61 0 2233 275 50 65 chr9 42506168 42507465 -99763979 + SST1 Satellite centromeric 284 1560 -3 423 0 0 0 chr9 42507471 42507518 -99763926 + (TG)n Simple_repeat Simple_repeat 2 48 0 240 220 17 0 chr9 42507518 42507577 -99763867 + CT-rich Low_complexity Low_complexity 2 61 0 1386 284 32 47 chr9 42508316 42509225 -99762219 - SST1 Satellite centromeric -13 895 1 402 74 0 0 chr9 42509344 42509398 -99762046 + (TTCA)n Simple_repeat Simple_repeat 4 57 0 215 309 137 7 chr9 42510288 42510427 -99761017 + MIR SINE MIR 104 260 -2 1092 155 0 4 chr9 42511202 42511923 -99759521 + (TGAG)n Simple_repeat Simple_repeat 1 717 0 325 299 108 37 chr9 42512127 42512341 -99759103 + MIR SINE MIR 10 238 -24 251 264 113 38 chr9 42512451 42512663 -99758781 + L2 LINE L2 2838 3065 -248 258 293 75 38 chr9 42513605 42513711 -99757733 + L2 LINE L2 3162 3271 -1 625 197 104 67 chr9 42514145 42514338 -99757106 - MER63A DNA MER1_type -10 200 1 320 324 6 22 chr9 42514485 42514667 -99756777 + (CA)n Simple_repeat Simple_repeat 2 180 0 28 0 0 0 chr9 42514932 42514960 -99756484 + AT_rich Low_complexity Low_complexity 1 28 0 1101 231 47 27 chr9 42515059 42515358 -99756086 - LTR68 LTR ERV1 -127 613 309 283 159 48 16 chr9 42515545 42515608 -99755836 - LTR68 LTR ERV1 -653 87 23 524 232 0 0 chr9 42515608 42515720 -99755724 + FRAM SINE Alu 63 174 -2 22 80 0 0 chr9 42516138 42516188 -99755256 + AT_rich Low_complexity Low_complexity 1 50 0 2636 158 5 2 chr9 42516916 42517316 -99754128 + MER61D LTR ERV1 1 401 -100 995 176 64 125 chr9 42517316 42517821 -99753623 + HUERS-P3b LTR ERV1 195 886 -2596 * 10937 188 38 53 chr9 42517820 42518448 -99752996 + HUERS-P3b LTR ERV1 609 1245 -5751 2349 64 3 49 chr9 42518448 42518774 -99752670 + AluY SINE Alu 1 311 0 10937 188 38 53 chr9 42518774 42520225 -99751219 + HUERS-P3b LTR ERV1 1245 2717 -4279 2031 142 27 33 chr9 42520225 42520591 -99750853 + THE1B LTR MaLR 1 364 0 10937 188 38 53 chr9 42520591 42523052 -99748392 + HUERS-P3b LTR ERV1 2717 6724 -272 180 0 0 0 chr9 42523052 42523072 -99748372 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 10937 188 38 53 chr9 42523072 42523340 -99748104 + HUERS-P3b LTR ERV1 6724 6995 -1 2602 169 34 28 chr9 42523341 42523660 -99747784 + MER61D LTR ERV1 1 326 -175 1937 134 3 7 chr9 42523660 42523951 -99747493 + AluSg SINE Alu 2 291 -19 2602 169 34 28 chr9 42523951 42524128 -99747316 + MER61D LTR ERV1 326 500 -1 894 195 19 123 chr9 42524505 42524813 -99746631 + MER93b LTR ERV1 98 373 0 1900 169 55 19 chr9 42524813 42525050 -99746394 + MER1B DNA MER1_type 1 255 -2457 1843 234 33 60 chr9 42525050 42525619 -99745825 - MLT2B3 LTR ERVL 0 554 1 1900 169 55 19 chr9 42525619 42525706 -99745738 + MER1B DNA MER1_type 255 337 -2 25 0 0 0 chr9 42526427 42526452 -99744992 + AT_rich Low_complexity Low_complexity 1 25 0 2663 198 23 45 chr9 42527411 42528031 -99743413 - L1MA6 LINE L1 -1 6299 5694 363 71 14 29 chr9 42528520 42528590 -99742854 + (TA)n Simple_repeat Simple_repeat 2 70 0 1605 203 3 3 chr9 42528629 42528935 -99742509 + AluJb SINE Alu 1 306 -6 511 292 40 32 chr9 42529419 42529696 -99741748 + L1ME3 LINE L1 5884 6162 0 25 65 0 0 chr9 42529743 42529789 -99741655 + AT_rich Low_complexity Low_complexity 1 46 0 361 297 115 33 chr9 42530253 42530435 -99741009 - MLT1J LTR MaLR -279 232 36 244 294 157 50 chr9 42532179 42532441 -99739003 - MLT1J2 LTR MaLR -24 426 137 3855 168 75 42 chr9 42533207 42534081 -99737363 - MER4D LTR ERV1 0 903 1 800 304 47 23 chr9 42534088 42534430 -99737014 + LTR16B LTR ERVL 109 458 -6 2459 152 39 0 chr9 42534732 42535146 -99736298 + MER57B LTR ERV1 1 430 -4 237 333 28 0 chr9 42535442 42535514 -99735930 + L2 LINE L2 3193 3266 -47 221 258 0 0 chr9 42536874 42536936 -99734508 + A-rich Low_complexity Low_complexity 1 62 0 1041 270 66 36 chr9 42537236 42537647 -99733797 - L1MC4 LINE L1 -321 7721 7299 1054 264 31 36 chr9 42537710 42538126 -99733318 - L1MC4 LINE L1 -733 7309 6896 584 302 80 22 chr9 42538127 42538438 -99733006 - L1M4 LINE L1 -1768 4378 4050 414 285 19 19 chr9 42538456 42538712 -99732732 + L1MEc LINE L1 2034 2289 -4107 288 324 124 16 chr9 42538832 42539082 -99732362 + L1MEc LINE L1 105 381 -6015 1875 152 66 20 chr9 42539085 42539433 -99732011 + THE1B LTR MaLR 1 364 0 242 324 81 36 chr9 42539451 42539698 -99731746 + L2 LINE L2 2933 3190 -123 1964 170 11 16 chr9 42539699 42540076 -99731368 + THE1C LTR MaLR 1 375 0 1330 279 82 42 chr9 42540469 42541699 -99729745 - L1M4 LINE L1 -2598 3548 2269 32 75 0 0 chr9 42541725 42541792 -99729652 + AT_rich Low_complexity Low_complexity 1 67 0 551 259 6 6 chr9 42541796 42541966 -99729478 - L1MEc LINE L1 -1521 4694 4525 249 304 101 14 chr9 42541968 42542175 -99729269 - L1MEc LINE L1 -2027 4188 3964 14150 30 0 0 chr9 42542188 42544639 -99726805 + L1PA3 LINE L1 3705 6155 0 742 269 75 27 chr9 42544655 42545219 -99726225 - L1MEc LINE L1 -2435 3780 3190 25 0 0 0 chr9 42545280 42545305 -99726139 + AT_rich Low_complexity Low_complexity 1 25 0 1024 225 56 70 chr9 42545320 42545666 -99725778 - MLT1A1 LTR MaLR -63 302 1 516 204 91 8 chr9 42545777 42545909 -99725535 - L1MA3 LINE L1 0 6305 6163 449 236 95 101 chr9 42545926 42546479 -99724965 - L1MEc LINE L1 -3720 2495 1985 401 290 21 86 chr9 42546603 42546789 -99724655 - MER96 DNA MER1_type? 0 175 2 23 0 0 0 chr9 42546875 42546898 -99724546 + AT_rich Low_complexity Low_complexity 1 23 0 321 271 6 54 chr9 42546899 42547065 -99724379 - HAL1 LINE L1 -961 1546 1389 325 266 42 16 chr9 42547255 42547447 -99723997 - L1MEc LINE L1 -5228 1168 972 795 329 26 23 chr9 42547526 42547915 -99723529 - L1MEc LINE L1 -5596 800 411 547 193 122 9 chr9 42547951 42548193 -99723251 - MLT1A1 LTR MaLR 0 390 1 186 403 0 0 chr9 42548198 42548270 -99723174 - L2 LINE L2 -358 2914 2843 1334 198 63 30 chr9 42548540 42548873 -99722571 + MER2 DNA MER2_type 1 344 0 188 292 79 22 chr9 42549321 42549410 -99722034 + L2 LINE L2 3175 3268 -4 971 274 80 6 chr9 42550481 42550820 -99720624 - MLT1A1 LTR MaLR -1 364 1 25 0 0 0 chr9 42551197 42551222 -99720222 + AT_rich Low_complexity Low_complexity 1 25 0 2397 73 0 16 chr9 42552493 42552809 -99718635 - AluY SINE Alu 0 311 1 4366 80 23 0 chr9 42553087 42553686 -99717758 + L1PA7 LINE L1 5506 6118 -36 1684 59 18 0 chr9 42553686 42553901 -99717543 + L1PA8 LINE L1 5948 6172 0 299 335 71 37 chr9 42553919 42554244 -99717200 + L1MEd LINE L1 586 921 -5284 277 351 71 18 chr9 42554609 42554834 -99716610 + L2 LINE L2 3073 3309 -4 470 341 76 22 chr9 42554868 42555235 -99716209 + L1MEd LINE L1 1436 1822 -4574 1287 250 46 131 chr9 42555285 42555936 -99715508 - MER77 LTR ERV1 -6 599 4 1460 268 43 48 chr9 42557345 42558013 -99713431 + L1M4 LINE L1 3573 4237 -1909 282 283 33 0 chr9 42558027 42558119 -99713325 + GA-rich Low_complexity Low_complexity 6 100 0 211 205 0 0 chr9 42558414 42558453 -99712991 + (CA)n Simple_repeat Simple_repeat 2 40 0 431 246 18 42 chr9 42558458 42558625 -99712819 - L1M4 LINE L1 -2383 3763 3601 * 3618 45 0 0 chr9 42558612 42559059 -99712385 - L1P LINE L1 -2143 4003 3557 6643 18 0 0 chr9 42559059 42559822 -99711622 + L1PA2 LINE L1 5389 6151 -4 702 265 106 45 chr9 42559857 42560153 -99711291 - L1M4 LINE L1 -2519 3627 3350 2061 136 0 0 chr9 42560153 42560461 -99710983 - AluSx SINE Alu -4 308 1 702 265 106 45 chr9 42560461 42560805 -99710639 - L1M4 LINE L1 -2796 3350 2948 50 31 0 0 chr9 42561189 42561253 -99710191 + AT_rich Low_complexity Low_complexity 1 64 0 25 31 0 0 chr9 42561892 42561924 -99709520 + AT_rich Low_complexity Low_complexity 1 32 0 22 56 0 0 chr9 42562274 42562310 -99709134 + AT_rich Low_complexity Low_complexity 1 36 0 811 300 63 12 chr9 42562853 42563014 -99708430 - SST1 Satellite centromeric -1129 434 283 342 0 0 0 chr9 42563014 42563052 -99708392 + (CCCCAG)n Simple_repeat Simple_repeat 2 39 0 811 300 63 12 chr9 42563052 42563303 -99708141 - SST1 Satellite centromeric -1280 283 1 233 226 16 0 chr9 42564039 42564101 -99707343 + GA-rich Low_complexity Low_complexity 1 63 0 210 91 0 0 chr9 42564101 42564134 -99707310 + (CA)n Simple_repeat Simple_repeat 2 34 0 621 279 60 45 chr9 42564160 42564643 -99706801 - SST1 Satellite centromeric -14 1549 1060 26 74 0 0 chr9 42565147 42565201 -99706243 + AT_rich Low_complexity Low_complexity 1 54 0 393 22 0 0 chr9 42568246 42568292 -99703152 + (TG)n Simple_repeat Simple_repeat 1 46 0 21 57 0 0 chr9 42569315 42569350 -99702094 + AT_rich Low_complexity Low_complexity 1 35 0 258 32 0 0 chr9 42569442 42569473 -99701971 + (CA)n Simple_repeat Simple_repeat 1 31 0 225 207 0 35 chr9 42570942 42571000 -99700444 + G-rich Low_complexity Low_complexity 3 58 0 843 200 0 0 chr9 42571638 42571793 -99699651 - FRAM SINE Alu -11 165 11 333 0 0 0 chr9 42572155 42572192 -99699252 + (GA)n Simple_repeat Simple_repeat 2 38 0 254 175 0 18 chr9 42574508 42574565 -99696879 + G-rich Low_complexity Low_complexity 3 58 0 1079 243 100 12 chr9 42574810 42575230 -99696214 - MLT1C LTR MaLR -10 457 1 186 216 0 0 chr9 42577260 42577297 -99694147 - L2 LINE L2 -244 3028 2992 180 264 35 58 chr9 42578307 42578394 -99693050 + MIR SINE MIR 108 192 -70 2125 223 55 12 chr9 42578537 42579115 -99692329 - LTR26 LTR ERV1 0 603 1 222 301 23 38 chr9 42580303 42580436 -99691008 + (CCCA)n Simple_repeat Simple_repeat 2 132 0 204 313 27 9 chr9 42580621 42580733 -99690711 + (TCTA)n Simple_repeat Simple_repeat 2 115 0 * 436 291 11 22 chr9 42580673 42580852 -99690592 + (TCCA)n Simple_repeat Simple_repeat 2 178 0 553 283 176 17 chr9 42580936 42581293 -99690151 - L2 LINE L2 0 3313 2900 252 357 30 30 chr9 42581886 42582054 -99689390 + MIR SINE MIR 23 190 -72 605 302 122 6 chr9 42582095 42582602 -99688842 + MER92B LTR ERV1 4 569 -67 1767 135 29 22 chr9 42583016 42583358 -99688086 - MER4A LTR ERV1 0 664 262 620 117 43 0 chr9 42583359 42583453 -99687991 - MER4A LTR ERV1 -566 98 1 1152 153 23 23 chr9 42584143 42584359 -99687085 + AluJo SINE Alu 85 300 -12 203 279 0 64 chr9 42585106 42585246 -99686198 + CT-rich Low_complexity Low_complexity 3 133 0 216 296 0 69 chr9 42585677 42585866 -99685578 + C-rich Low_complexity Low_complexity 2 177 0 29 0 0 0 chr9 42586746 42586775 -99684669 + AT_rich Low_complexity Low_complexity 1 29 0 427 293 86 0 chr9 42587145 42587285 -99684159 - MIR SINE MIR -106 156 5 395 291 182 0 chr9 42587286 42587451 -99683993 - MIR SINE MIR -3 259 65 938 225 62 68 chr9 42587564 42587919 -99683525 + L1ME LINE L1 4755 5107 -1039 1406 192 0 11 chr9 42587926 42588212 -99683232 + AluJb SINE Alu 30 312 0 1066 278 15 14 chr9 42588245 42588595 -99682849 + L1ME LINE L1 5229 5578 -588 513 156 0 174 chr9 42588595 42588717 -99682727 - MLT1C LTR MaLR -329 138 51 1446 140 163 23 chr9 42588717 42588974 -99682470 - AluJo SINE Alu -9 293 1 513 156 0 174 chr9 42588974 42589018 -99682426 - MLT1C LTR MaLR -416 51 1 3860 98 45 63 chr9 42589388 42590034 -99681410 + MER51A LTR ERV1 1 634 0 873 238 6 98 chr9 42590111 42590426 -99681018 + MLT1A2 LTR MaLR 4 289 -85 457 259 9 0 chr9 42590426 42590542 -99680902 + MLT1A2 LTR MaLR 258 374 0 319 239 138 91 chr9 42590771 42591047 -99680397 + L1M4c LINE L1 1051 1339 -5045 2467 107 59 0 chr9 42591260 42591614 -99679830 + THE1C LTR MaLR 1 375 0 1511 200 13 13 chr9 42592182 42592487 -99678957 - LOR1a LTR ERV1 -5 492 188 293 253 27 0 chr9 42592490 42592565 -99678879 + G-rich Low_complexity Low_complexity 3 79 0 290 210 37 25 chr9 42592705 42592786 -99678658 + GA-rich Low_complexity Low_complexity 4 85 0 574 166 17 39 chr9 42592806 42592987 -99678457 + GA-rich Low_complexity Low_complexity 4 180 0 289 113 0 48 chr9 42592991 42593053 -99678391 + (GGGA)n Simple_repeat Simple_repeat 1 59 0 253 116 87 0 chr9 42593557 42593626 -99677818 + (CA)n Simple_repeat Simple_repeat 2 76 0 561 166 29 23 chr9 42593730 42593905 -99677539 + (TGGA)n Simple_repeat Simple_repeat 3 178 0 934 110 29 0 chr9 42593934 42594107 -99677337 + (TGGA)n Simple_repeat Simple_repeat 3 180 0 696 137 22 44 chr9 42594118 42594301 -99677143 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 550 160 15 0 chr9 42594317 42594448 -99676996 + (TGGA)n Simple_repeat Simple_repeat 3 135 0 22 0 0 0 chr9 42595387 42595409 -99676035 + AT_rich Low_complexity Low_complexity 1 22 0 1651 149 0 4 chr9 42595493 42595783 -99675661 + AluSx SINE Alu 35 312 0 22 35 0 0 chr9 42596764 42596793 -99674651 + AT_rich Low_complexity Low_complexity 1 29 0 2623 133 24 5 chr9 42597882 42598302 -99673142 + MSTA LTR MaLR 1 428 0 7647 191 68 10 chr9 42598302 42599863 -99671581 + MSTA-int LTR MaLR 1 1651 0 2418 155 21 16 chr9 42599863 42600289 -99671155 + MSTA LTR MaLR 1 428 0 1589 184 33 0 chr9 42600520 42600819 -99670625 + 7SLRNA srpRNA srpRNA 10 318 -2 22 0 0 0 chr9 42600918 42600940 -99670504 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chr9 42601095 42601131 -99670313 + AT_rich Low_complexity Low_complexity 1 36 0 207 114 0 0 chr9 42601610 42601645 -99669799 + (CA)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr9 42602535 42602556 -99668888 + AT_rich Low_complexity Low_complexity 1 21 0 216 214 0 0 chr9 42602621 42602663 -99668781 + A-rich Low_complexity Low_complexity 1 42 0 23 86 0 0 chr9 42603063 42603121 -99668323 + AT_rich Low_complexity Low_complexity 1 58 0 23 0 0 0 chr9 42603496 42603519 -99667925 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr9 42604434 42604460 -99666984 + AT_rich Low_complexity Low_complexity 1 26 0 30 0 0 0 chr9 42604711 42604741 -99666703 + AT_rich Low_complexity Low_complexity 1 30 0 1778 151 3 16 chr9 42604787 42605092 -99666352 - AluSg SINE Alu -9 301 1 1647 216 106 9 chr9 42605235 42605660 -99665784 - MER31B LTR ERV1 0 466 1 22 56 0 0 chr9 42606484 42606520 -99664924 + AT_rich Low_complexity Low_complexity 1 36 0 655 334 123 14 chr9 42607724 42608164 -99663280 + L2 LINE L2 2474 2961 -353 248 290 40 95 chr9 42608271 42608471 -99662973 + L2 LINE L2 3119 3307 -6 528 329 100 41 chr9 42608671 42609160 -99662284 - LTR33A LTR ERVL -4 519 2 2090 90 0 0 chr9 42609224 42609501 -99661943 + AluY SINE Alu 14 290 -21 200 97 32 0 chr9 42609657 42609688 -99661756 + (TG)n Simple_repeat Simple_repeat 2 33 0 243 245 0 0 chr9 42609828 42609881 -99661563 + L2 LINE L2 3214 3266 -6 305 322 143 63 chr9 42611146 42611432 -99660012 - L2 LINE L2 -4 3309 3001 13984 158 20 6 chr9 42612209 42614240 -99657204 + Tigger1 DNA MER2_type 24 2095 -323 1979 126 10 0 chr9 42614240 42614541 -99656903 + AluSx SINE Alu 7 310 -2 13984 158 20 6 chr9 42614541 42614869 -99656575 + Tigger1 DNA MER2_type 2095 2417 -1 322 280 109 36 chr9 42615020 42615213 -99656231 - L1ME4a LINE L1 -240 5881 5675 758 236 132 9 chr9 42615545 42615757 -99655687 - MER8 DNA MER2_type 0 239 2 23 54 0 0 chr9 42616962 42616999 -99654445 + AT_rich Low_complexity Low_complexity 1 37 0 30 0 0 0 chr9 42617008 42617038 -99654406 + AT_rich Low_complexity Low_complexity 1 30 0 28 0 0 0 chr9 42617304 42617332 -99654112 + AT_rich Low_complexity Low_complexity 1 28 0 1121 76 0 0 chr9 42617435 42617580 -99653864 + L1PA6 LINE L1 6005 6149 -5 32 26 0 0 chr9 42617748 42617787 -99653657 + AT_rich Low_complexity Low_complexity 1 39 0 25 51 0 0 chr9 42617845 42617884 -99653560 + AT_rich Low_complexity Low_complexity 1 39 0 25 0 0 0 chr9 42617901 42617926 -99653518 + AT_rich Low_complexity Low_complexity 1 25 0 23 68 0 0 chr9 42618036 42618080 -99653364 + AT_rich Low_complexity Low_complexity 1 44 0 21 57 0 0 chr9 42618113 42618148 -99653296 + AT_rich Low_complexity Low_complexity 1 35 0 2170 120 0 19 chr9 42618178 42618486 -99652958 - AluY SINE Alu -9 302 1 628 231 13 26 chr9 42618612 42618768 -99652676 + MLT1A2 LTR MaLR 167 320 -54 1204 319 35 61 chr9 42618776 42620030 -99651414 + L1PA12 LINE L1 8 1762 -5819 2037 164 19 25 chr9 42620030 42620396 -99651048 + THE1B LTR MaLR 1 364 0 8994 123 7 2 chr9 42620396 42621771 -99649673 + THE1B-int LTR MaLR 1 1382 -198 18275 21 1 0 chr9 42621871 42624929 -99646515 + L1HS LINE L1 3096 6155 0 219 69 0 0 chr9 42624929 42624958 -99646486 + (A)n Simple_repeat Simple_repeat 1 29 0 30 0 0 0 chr9 42625360 42625390 -99646054 + AT_rich Low_complexity Low_complexity 1 30 0 32 26 0 0 chr9 42625658 42625697 -99645747 + AT_rich Low_complexity Low_complexity 1 39 0 1065 90 0 0 chr9 42625789 42625934 -99645510 + L1PA6 LINE L1 6005 6149 -5 32 26 0 0 chr9 42626102 42626141 -99645303 + AT_rich Low_complexity Low_complexity 1 39 0 28 48 0 0 chr9 42626199 42626241 -99645203 + AT_rich Low_complexity Low_complexity 1 42 0 25 0 0 0 chr9 42626258 42626283 -99645161 + AT_rich Low_complexity Low_complexity 1 25 0 22 35 0 0 chr9 42626327 42626356 -99645088 + AT_rich Low_complexity Low_complexity 1 29 0 23 68 0 0 chr9 42626395 42626439 -99645005 + AT_rich Low_complexity Low_complexity 1 44 0 21 57 0 0 chr9 42626472 42626507 -99644937 + AT_rich Low_complexity Low_complexity 1 35 0 2171 120 0 23 chr9 42626537 42626846 -99644598 - AluY SINE Alu -9 302 1 662 229 51 6 chr9 42626971 42627128 -99644316 + MLT1A2 LTR MaLR 157 320 -54 1202 312 37 67 chr9 42627136 42628390 -99643054 + L1PA12 LINE L1 8 1762 -5819 2000 162 25 25 chr9 42628390 42628754 -99642690 + THE1B LTR MaLR 1 364 0 10769 109 5 2 chr9 42628754 42630325 -99641119 + THE1B-int LTR MaLR 1 1575 -5 1985 173 16 28 chr9 42630330 42630694 -99640750 + THE1B LTR MaLR 1 360 -4 6497 269 17 11 chr9 42630698 42632245 -99639199 + L1PA12 LINE L1 1539 3076 -4508 203 0 0 36 chr9 42632245 42632273 -99639171 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6497 269 17 11 chr9 42632273 42632450 -99638994 + L1PA12 LINE L1 3076 3251 -4333 1890 110 92 34 chr9 42632450 42632742 -99638702 + AluY SINE Alu 1 309 -2 6497 269 17 11 chr9 42632742 42634997 -99636447 + L1PA12 LINE L1 3251 5251 -2333 2020 206 47 0 chr9 42635028 42635513 -99635931 - L1 LINE L1 -1097 5049 4542 5063 142 2 5 chr9 42635514 42636311 -99635133 + THE1C-int LTR MaLR 786 1580 0 1948 162 32 19 chr9 42636311 42636681 -99634763 + THE1C LTR MaLR 1 375 0 2291 286 42 42 chr9 42636692 42636848 -99634596 - L1PA13 LINE L1 -4712 2075 1921 1820 139 30 26 chr9 42636848 42636870 -99634574 - AluSx SINE Alu -8 304 284 378 0 0 0 chr9 42636870 42636912 -99634532 + (TG)n Simple_repeat Simple_repeat 1 42 0 1820 139 30 26 chr9 42636912 42637191 -99634253 - AluSx SINE Alu -28 284 2 2291 286 42 42 chr9 42637191 42637494 -99633950 - L1PA13 LINE L1 -4866 1921 1620 252 0 0 0 chr9 42637494 42637522 -99633922 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2291 286 42 42 chr9 42637522 42638741 -99632703 - L1PA13 LINE L1 -5167 1620 1 215 268 0 0 chr9 42638962 42639018 -99632426 + CT-rich Low_complexity Low_complexity 1 56 0 684 340 57 36 chr9 42639057 42639702 -99631742 - L1MEd LINE L1 -4864 1255 597 1810 154 0 0 chr9 42640089 42640349 -99631095 - AluSg SINE Alu -16 294 35 28 29 0 0 chr9 42640401 42640436 -99631008 + AT_rich Low_complexity Low_complexity 1 35 0 240 192 128 0 chr9 42640892 42640970 -99630474 - Charlie2a DNA MER1_type -1231 1631 1544 1341 289 90 19 chr9 42641084 42642032 -99629412 - Charlie2a DNA MER1_type -1448 1414 400 1069 270 86 55 chr9 42642164 42642804 -99628640 + L1ME2 LINE L1 134 793 -5603 1117 269 57 35 chr9 42642860 42643406 -99628038 + L1ME2 LINE L1 5549 6106 -127 1088 260 72 49 chr9 42643563 42644136 -99627308 + L1ME2 LINE L1 5560 6145 -19 27 96 0 0 chr9 42644871 42644954 -99626490 + AT_rich Low_complexity Low_complexity 1 83 0 310 250 0 0 chr9 42645237 42645293 -99626151 + L1PA13 LINE L1 762 817 -5970 647 349 76 8 chr9 42645310 42645665 -99625779 + L1PA13 LINE L1 877 1255 -5532 941 264 38 106 chr9 42645739 42646379 -99625065 - LTR4 LTR ERV1 0 596 1 1305 220 82 14 chr9 42646392 42646835 -99624609 + LTR22 LTR ERVK 16 458 0 4050 176 21 34 chr9 42646837 42647775 -99623669 + L1PA13 LINE L1 1441 2380 -4417 2014 134 38 41 chr9 42647775 42648140 -99623304 - THE1B LTR MaLR 0 364 1 6802 132 16 6 chr9 42648140 42649250 -99622194 - THE1B-int LTR MaLR 0 1580 460 204 192 39 26 chr9 42649252 42649330 -99622114 + (TAAA)n Simple_repeat Simple_repeat 4 82 0 839 257 31 31 chr9 42650058 42650350 -99621094 - MER58B DNA MER1_type -14 327 36 4082 151 70 27 chr9 42650829 42651423 -99620021 - Tigger3b DNA MER2_type -1797 1231 587 7524 31 2 1 chr9 42651423 42652774 -99618670 + L1PA3 LINE L1 4801 6152 -3 4082 151 70 27 chr9 42652774 42653038 -99618406 - Tigger3b DNA MER2_type -2441 587 336 403 208 10 31 chr9 42653065 42653161 -99618283 - Tigger3b DNA MER2_type -1137 94 1 1898 119 21 25 chr9 42653252 42653537 -99617907 - AluSx SINE Alu -28 284 1 2148 231 35 69 chr9 42653624 42654308 -99617136 - MER76 LTR ERV -27 661 1 2223 58 43 0 chr9 42656522 42656827 -99614617 + AluY SINE Alu 1 311 0 2301 70 0 7 chr9 42657072 42657394 -99614050 + AluY SINE Alu 1 320 0 1280 191 105 18 chr9 42657481 42657758 -99613686 + AluJo SINE Alu 1 301 -11 24 0 0 0 chr9 42657836 42657860 -99613584 + AT_rich Low_complexity Low_complexity 1 24 0 1447 314 150 18 chr9 42658195 42658937 -99612507 + L1MD2 LINE L1 9 848 -5561 2296 229 4 13 chr9 42658937 42659182 -99612262 + MER70A LTR ERVL 1 242 -230 2313 87 16 10 chr9 42659182 42659491 -99611953 + AluSq SINE Alu 1 311 -2 2296 229 4 13 chr9 42659491 42659721 -99611723 + MER70A LTR ERVL 242 472 0 4521 199 85 6 chr9 42659730 42660719 -99610725 + MER70A-int LTR ERVL 10 1076 -3947 433 191 12 0 chr9 42660738 42660822 -99610622 + MER70A-int LTR ERVL 2300 2384 -2639 1815 106 35 22 chr9 42660822 42661216 -99610228 - LTR7 LTR ERV1 0 450 1 2686 97 7 11 chr9 42661216 42661649 -99609795 - HERVH LTR ERV1 0 7713 7283 6727 133 7 7 chr9 42661668 42663161 -99608283 - HERVH LTR ERV1 -2287 4242 3582 642 128 0 34 chr9 42663163 42663280 -99608164 - HERVH LTR ERV1 -4988 2725 2613 1831 122 26 9 chr9 42663287 42663678 -99607766 - LTR7 LTR ERV1 0 450 1 12900 187 38 14 chr9 42663678 42665828 -99605616 + MER70A-int LTR ERVL 2380 4604 -419 1960 135 3 20 chr9 42665828 42666125 -99605319 - AluSp SINE Alu -21 292 1 12900 187 38 14 chr9 42666125 42666555 -99604889 + MER70A-int LTR ERVL 4604 5022 -1 2067 222 4 68 chr9 42666563 42667067 -99604377 + MER70A LTR ERVL 1 472 0 1996 237 20 28 chr9 42667068 42667811 -99603633 + L1MD2 LINE L1 845 1585 -4821 1023 224 50 122 chr9 42667819 42668320 -99603124 - MLT1D LTR MaLR -40 465 1 3405 153 37 49 chr9 42668821 42669601 -99601843 - L1MA5 LINE L1 0 6300 5530 741 187 0 0 chr9 42669613 42669768 -99601676 - L1MA5 LINE L1 -1120 5026 4872 968 254 95 65 chr9 42669770 42670816 -99600628 + L1MD2 LINE L1 1571 2644 -3762 482 277 43 56 chr9 42671214 42671430 -99600014 + MER61D LTR ERV1 338 1237 -10 1847 241 43 53 chr9 42671430 42671660 -99599784 + L1MD2 LINE L1 2667 2898 -3508 273 109 0 0 chr9 42671660 42671706 -99599738 + (CA)n Simple_repeat Simple_repeat 1 46 0 1847 241 43 53 chr9 42671706 42672355 -99599089 + L1MD2 LINE L1 2898 3537 -2869 1106 216 23 32 chr9 42672332 42672680 -99598764 + L1MD2 LINE L1 5523 5867 -635 * 280 189 0 78 chr9 42672680 42672770 -99598674 - L1MA1 LINE L1 -233 6069 5987 30 45 0 0 chr9 42672788 42672832 -99598612 + AT_rich Low_complexity Low_complexity 1 44 0 773 251 78 32 chr9 42672832 42673115 -99598329 + L1MD2 LINE L1 5855 6150 -469 1275 233 78 78 chr9 42673159 42673971 -99597473 + SST1 Satellite centromeric 751 1562 -1 471 60 0 0 chr9 42673975 42674042 -99597402 + (TG)n Simple_repeat Simple_repeat 2 68 0 239 173 19 0 chr9 42674049 42674101 -99597343 + CT-rich Low_complexity Low_complexity 2 54 0 2640 266 71 52 chr9 42674840 42675091 -99596353 + SST1 Satellite centromeric 1 246 -1317 309 26 0 0 chr9 42675091 42675129 -99596315 + (CTGGGG)n Simple_repeat Simple_repeat 2 39 0 2640 266 71 52 chr9 42675129 42676409 -99595035 + SST1 Satellite centromeric 246 1562 -1 231 217 17 0 chr9 42676431 42676491 -99594953 + CT-rich Low_complexity Low_complexity 2 62 0 1942 284 45 62 chr9 42676508 42677810 -99593634 + SST1 Satellite centromeric 284 1562 -1 186 43 0 0 chr9 42677814 42677837 -99593607 + (TG)n Simple_repeat Simple_repeat 2 24 0 240 220 17 0 chr9 42677837 42677896 -99593548 + CT-rich Low_complexity Low_complexity 2 61 0 2783 276 52 55 chr9 42678628 42680639 -99590805 - SST1 Satellite centromeric -13 2292 250 309 26 0 0 chr9 42680639 42680677 -99590767 + (CCCCAG)n Simple_repeat Simple_repeat 2 39 0 2783 276 52 55 chr9 42680677 42680927 -99590517 - SST1 Satellite centromeric -2055 250 1 249 210 16 0 chr9 42681660 42681722 -99589722 + GA-rich Low_complexity Low_complexity 1 63 0 261 57 0 0 chr9 42681722 42681757 -99589687 + (CA)n Simple_repeat Simple_repeat 2 36 0 796 264 67 52 chr9 42681783 42682260 -99589184 - SST1 Satellite centromeric -14 1549 1066 26 74 0 0 chr9 42682770 42682824 -99588620 + AT_rich Low_complexity Low_complexity 1 54 0 426 20 0 0 chr9 42683572 42683623 -99587821 + (CA)n Simple_repeat Simple_repeat 2 52 0 249 33 0 0 chr9 42685887 42685917 -99585527 + (TG)n Simple_repeat Simple_repeat 1 30 0 21 57 0 0 chr9 42686943 42686978 -99584466 + AT_rich Low_complexity Low_complexity 1 35 0 330 26 0 0 chr9 42687066 42687105 -99584339 + (CA)n Simple_repeat Simple_repeat 1 39 0 206 167 0 30 chr9 42688608 42688674 -99582770 + G-rich Low_complexity Low_complexity 1 64 0 917 193 0 0 chr9 42689315 42689481 -99581963 - FRAM SINE Alu 0 166 1 369 43 0 0 chr9 42689833 42689880 -99581564 + (GA)n Simple_repeat Simple_repeat 2 48 0 580 183 0 42 chr9 42690358 42690400 -99581044 - MER5B DNA MER1_type -1 177 135 2186 126 3 3 chr9 42690400 42690710 -99580734 - AluSq SINE Alu -3 310 1 580 183 0 42 chr9 42690710 42690787 -99580657 - MER5B DNA MER1_type -43 135 63 2695 103 30 32 chr9 42690787 42691225 -99580219 - L1PA2 LINE L1 -62 6093 5657 1742 14 0 0 chr9 42691097 42691305 -99580139 + L1P1 LINE L1 5593 5800 -355 * 280 42 62 21 chr9 42691307 42691355 -99580089 - MER5B DNA MER1_type -121 57 8 396 290 48 41 chr9 42692172 42692317 -99579127 + MIR SINE MIR 27 172 -90 361 292 43 65 chr9 42692475 42692660 -99578784 - MIR SINE MIR -61 201 21 * 911 237 24 43 chr9 42692604 42692673 -99578771 + MIR SINE MIR 13 82 -180 1829 135 2 121 chr9 42692673 42693087 -99578357 - MER47A DNA MER2_type -1 365 1 911 237 24 43 chr9 42693087 42693270 -99578174 + MIR SINE MIR 82 260 -2 213 328 23 8 chr9 42694125 42694224 -99577220 - MIR SINE MIR -65 143 44 396 276 16 0 chr9 42694959 42695082 -99576362 - MIR3 SINE MIR 0 208 84 257 260 180 0 chr9 42695118 42695218 -99576226 - L2 LINE L2 -2 3270 3153 408 231 11 0 chr9 42696847 42696938 -99574506 - MIR SINE MIR -115 147 56 209 108 27 0 chr9 42696961 42696998 -99574446 + GA-rich Low_complexity Low_complexity 3 40 0 190 301 78 29 chr9 42697195 42697298 -99574146 + MIR3 SINE MIR 15 122 -86 238 375 0 0 chr9 42698016 42698112 -99573332 - L3b LINE CR1 -189 1394 1299 1294 253 113 21 chr9 42698613 42699156 -99572288 - L2 LINE L2 -18 3295 2696 2136 137 0 0 chr9 42699156 42699448 -99571996 - AluSg SINE Alu -18 292 1 1294 253 113 21 chr9 42699448 42699625 -99571819 - L2 LINE L2 -617 2696 2537 2223 121 0 7 chr9 42702210 42702517 -99568927 - AluSx SINE Alu -7 305 1 620 279 60 0 chr9 42702699 42702882 -99568562 - MIR SINE MIR -10 252 59 191 321 18 0 chr9 42702979 42703035 -99568409 - MIR SINE MIR -115 93 37 773 72 9 0 chr9 42703072 42703183 -99568261 - HY1 scRNA scRNA 0 112 1 327 213 18 29 chr9 42703292 42703453 -99567991 + MIR SINE MIR 29 260 -2 28 29 0 0 chr9 42703813 42703848 -99567596 + AT_rich Low_complexity Low_complexity 1 35 0 23 86 0 0 chr9 42704524 42704582 -99566862 + AT_rich Low_complexity Low_complexity 1 58 0 318 239 109 0 chr9 42706244 42706336 -99565108 - L2 LINE L2 -10 3303 3202 3019 6 0 0 chr9 42706514 42706832 -99564612 - AluYb8 SINE Alu 0 318 1 441 152 0 0 chr9 42707160 42707226 -99564218 + AluJ/FLAM SINE Alu 9 74 -238 267 109 0 55 chr9 42707260 42707315 -99564129 + Alu SINE Alu 251 302 0 745 193 0 0 chr9 42707321 42707456 -99563988 + AluJb SINE Alu 168 302 -10 2112 121 0 3 chr9 42707461 42707750 -99563694 + AluSx SINE Alu 21 308 -4 207 247 146 0 chr9 42707928 42708017 -99563427 + L2 LINE L2 2920 3021 -251 560 226 81 32 chr9 42708658 42708844 -99562600 + L2 LINE L2 3117 3311 -2 469 261 54 8 chr9 42708861 42708991 -99562453 + L2 LINE L2 3137 3272 0 1918 162 3 16 chr9 42709405 42709713 -99561731 + AluJb SINE Alu 1 304 -8 369 327 51 0 chr9 42712107 42712263 -99559181 + L2 LINE L2 3101 3264 -8 351 0 0 0 chr9 42712547 42712572 -99558872 + (CCA)n Simple_repeat Simple_repeat 1 64 0 351 0 0 0 chr9 42712572 42712611 -99558833 + (CCA)n Simple_repeat Simple_repeat 3 41 0 301 333 56 0 chr9 42712963 42713089 -99558355 - MIR3 SINE MIR -6 202 70 2141 128 3 3 chr9 42713090 42713387 -99558057 + AluSx SINE Alu 1 297 -15 237 271 0 0 chr9 42713418 42713466 -99557978 - MIR SINE MIR -124 84 37 1719 149 73 0 chr9 42713536 42713797 -99557647 - AluJb SINE Alu -32 280 1 488 254 71 12 chr9 42713797 42713966 -99557478 - MIR SINE MIR -71 191 13 425 259 182 0 chr9 42714700 42714843 -99556601 - MER5A DNA MER1_type 0 189 21 608 336 66 24 chr9 42714984 42715083 -99556361 + L2 LINE L2 2959 3052 -261 2374 91 0 0 chr9 42715083 42715426 -99556018 - AluSp SINE Alu 0 343 1 608 336 66 24 chr9 42715426 42715658 -99555786 + L2 LINE L2 3052 3305 -8 2128 142 7 0 chr9 42715659 42715969 -99555475 + AluSx SINE Alu 1 312 0 509 333 7 0 chr9 42716304 42716448 -99554996 - L2 LINE L2 -1 3271 3127 289 235 62 0 chr9 42717643 42717724 -99553720 - MIR3 SINE MIR -15 193 108 611 208 116 51 chr9 42718611 42718827 -99552617 - MIR SINE MIR -10 252 23 303 93 0 0 chr9 42718945 42718988 -99552456 + MIR SINE MIR 104 146 -62 324 312 24 8 chr9 42719326 42719451 -99551993 - LTR33 LTR ERVL -5 516 390 288 258 149 63 chr9 42719503 42719724 -99551720 - LTR33 LTR ERVL -235 286 47 222 252 180 18 chr9 42720094 42720205 -99551239 + L2 LINE L2 3142 3270 -2 2788 16 0 10 chr9 42720533 42720845 -99550599 - AluY SINE Alu -2 309 1 525 262 27 13 chr9 42721123 42721272 -99550172 + MIR SINE MIR 48 198 -64 637 179 9 0 chr9 42721285 42721391 -99550053 + FLAM_A SINE Alu 1 107 -35 2048 107 35 24 chr9 42721402 42721692 -99549752 - AluSq SINE Alu -20 293 1 2281 109 6 0 chr9 42722342 42722653 -99548791 + AluSq SINE Alu 1 313 0 280 244 114 41 chr9 42722717 42722840 -99548604 + MIR SINE MIR 64 195 -67 233 178 0 68 chr9 42723103 42723176 -99548268 + L2 LINE L2 3163 3230 -83 2499 156 17 13 chr9 42723710 42724179 -99547265 + L1MB7 LINE L1 5714 6184 0 299 213 133 0 chr9 42724880 42724955 -99546489 + MIR3 SINE MIR 76 160 -48 347 343 58 0 chr9 42725200 42725372 -99546072 + MIR SINE MIR 49 230 -32 2058 143 0 3 chr9 42725413 42725707 -99545737 - AluSx SINE Alu -19 293 1 367 290 127 82 chr9 42725771 42726174 -99545270 - MLT1J2 LTR MaLR -21 429 9 358 256 160 0 chr9 42726600 42726756 -99544688 + MIR SINE MIR 70 250 -12 228 323 11 11 chr9 42727087 42727180 -99544264 + MIR SINE MIR 40 132 -76 1059 223 36 8 chr9 42727608 42727859 -99543585 - MIR SINE MIR 0 262 5 673 215 30 33 chr9 42727861 42728063 -99543381 - MIR SINE MIR -3 259 64 1981 292 36 43 chr9 42730623 42731660 -99539784 - SST1 Satellite centromeric -534 1029 1 297 89 0 0 chr9 42732359 42732404 -99539040 + (CA)n Simple_repeat Simple_repeat 2 46 0 265 200 17 0 chr9 42732411 42732471 -99538973 + GA-rich Low_complexity Low_complexity 2 62 0 1195 189 57 111 chr9 42732691 42733077 -99538367 - MLT1A1 LTR MaLR 0 365 1 741 246 86 64 chr9 42733450 42733778 -99537666 - L1P5 LINE L1 -352 5804 5484 2592 89 3 43 chr9 42733778 42734148 -99537296 + THE1A LTR MaLR 1 355 0 11309 114 2 1 chr9 42734148 42735725 -99535719 + THE1A-int LTR MaLR 1 1580 0 2194 141 3 22 chr9 42735725 42736087 -99535357 + THE1A LTR MaLR 1 355 0 741 246 86 64 chr9 42736087 42736251 -99535193 - L1P5 LINE L1 -671 5485 5305 1925 147 3 3 chr9 42736373 42736659 -99534785 - AluSq SINE Alu -25 288 3 823 174 0 0 chr9 42736882 42737014 -99534430 - FLAM_C SINE Alu -1 132 1 1391 214 39 0 chr9 42737472 42737592 -99533852 + AluJb SINE Alu 1 115 -197 198 0 0 0 chr9 42737592 42737614 -99533830 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 1391 214 39 0 chr9 42737614 42737778 -99533666 + AluJb SINE Alu 115 296 -16 4139 154 44 4 chr9 42737780 42738461 -99532983 + Tigger1 DNA MER2_type 1066 1773 -645 2192 123 7 0 chr9 42738461 42738762 -99532682 - AluSp SINE Alu -10 303 1 587 233 23 114 chr9 42738819 42739038 -99532406 + MER115 DNA AcHobo 445 643 -50 498 101 82 6 chr9 42739221 42739379 -99532065 + (TATAA)n Simple_repeat Simple_repeat 5 174 0 33 56 0 0 chr9 42739379 42739433 -99532011 + AT_rich Low_complexity Low_complexity 1 54 0 3726 146 2 43 chr9 42739433 42739940 -99531504 + Tigger1 DNA MER2_type 1801 2277 -141 2012 121 39 0 chr9 42739940 42740220 -99531224 - AluSx SINE Alu -20 292 2 3726 146 2 43 chr9 42740220 42740357 -99531087 + Tigger1 DNA MER2_type 2277 2418 0 377 267 22 22 chr9 42740360 42740495 -99530949 - LTR16C LTR ERVL -17 474 340 1129 272 109 28 chr9 42740842 42741388 -99530056 + MER115 DNA AcHobo 15 643 -50 1737 113 14 18 chr9 42741796 42742080 -99529364 - L1MA4 LINE L1 0 6300 6018 344 240 118 98 chr9 42742400 42742604 -99528840 - MIR SINE MIR -11 251 44 1980 151 0 7 chr9 42742704 42743003 -99528441 + AluSx SINE Alu 1 297 -15 274 307 50 0 chr9 42743100 42743201 -99528243 - L2 LINE L2 -15 3298 3193 352 335 56 19 chr9 42743751 42743966 -99527478 - MIR SINE MIR -12 250 28 33 90 0 0 chr9 42744350 42744439 -99527005 + AT_rich Low_complexity Low_complexity 1 89 0 576 111 0 11 chr9 42744623 42744713 -99526731 - L1PA16 LINE L1 -9 6157 6069 743 181 0 51 chr9 42744951 42745089 -99526355 + FLAM_A SINE Alu 1 131 -2 1476 221 20 6 chr9 42745090 42745418 -99526026 - MER93a LTR ERV1 -7 395 17 201 74 0 0 chr9 42745562 42745589 -99525855 + (CTTAT)n Simple_repeat Simple_repeat 5 31 0 557 212 0 18 chr9 42745941 42746054 -99525390 - AluSp SINE Alu -101 212 102 1843 155 3 7 chr9 42746146 42746436 -99525008 + AluJb SINE Alu 1 289 -23 2233 118 7 3 chr9 42747285 42747590 -99523854 + AluSq SINE Alu 5 310 -3 496 303 77 30 chr9 42747721 42748058 -99523386 + L1ME3A LINE L1 5421 5773 -389 44 35 0 0 chr9 42748072 42748130 -99523314 + AT_rich Low_complexity Low_complexity 1 58 0 1853 157 0 0 chr9 42748130 42748416 -99523028 - AluSx SINE Alu -24 288 3 2024 127 16 38 chr9 42748418 42748591 -99522853 - AluSx SINE Alu -4 308 144 1818 159 7 0 chr9 42748591 42748874 -99522570 - AluY SINE Alu -19 292 8 2024 127 16 38 chr9 42748874 42749015 -99522429 - AluSx SINE Alu -168 144 1 258 226 54 21 chr9 42749055 42749148 -99522296 + L1ME3A LINE L1 5852 5947 -223 1474 143 4 29 chr9 42749196 42749434 -99522010 + AluSg/x SINE Alu 66 297 -15 21 36 0 0 chr9 42749434 42749462 -99521982 + AT_rich Low_complexity Low_complexity 1 28 0 298 120 50 2 chr9 42749792 42750034 -99521410 + AluSq SINE Alu 1 292 -11 3374 179 39 10 chr9 42750300 42750988 -99520456 + L1MC2 LINE L1 5616 6323 -21 414 0 0 0 chr9 42750993 42751039 -99520405 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 2128 113 0 0 chr9 42751042 42751325 -99520119 - AluY SINE Alu -28 283 1 1049 166 0 0 chr9 42751328 42751485 -99519959 - AluJb SINE Alu -19 293 137 1326 214 23 5 chr9 42751490 42751805 -99519639 + L1MC/D LINE L1 5370 5629 -715 40 0 0 0 chr9 42751805 42751845 -99519599 + AT_rich Low_complexity Low_complexity 1 40 0 23 0 0 0 chr9 42752024 42752047 -99519397 + AT_rich Low_complexity Low_complexity 1 23 0 866 222 14 32 chr9 42752320 42752536 -99518908 + AluSx SINE Alu 1 212 -100 235 182 0 0 chr9 42752545 42752589 -99518855 + Charlie1 DNA MER1_type 2718 2761 0 521 195 24 24 chr9 42752597 42752720 -99518724 - L2 LINE L2 -4 3309 3187 1040 122 0 0 chr9 42752758 42752897 -99518547 + AluSq/x SINE Alu 3 141 -171 2195 96 0 45 chr9 42752897 42753211 -99518233 + AluSx SINE Alu 1 300 -12 682 158 8 23 chr9 42753350 42753517 -99517927 - AluSp/q SINE Alu 0 313 176 2094 117 0 0 chr9 42753573 42753854 -99517590 + AluSg SINE Alu 29 309 -1 228 323 77 8 chr9 42753907 42754037 -99517407 + HAL1 LINE L1 2219 2357 -150 2290 214 117 8 chr9 42754242 42754762 -99516682 - MER77 LTR ERV1 -28 577 1 233 308 15 0 chr9 42754778 42754843 -99516601 + L1MC/D LINE L1 5511 5576 -2232 1858 172 3 7 chr9 42754874 42755176 -99516268 - AluJb SINE Alu -11 301 1 260 209 57 19 chr9 42755176 42755209 -99516235 + (TATATG)n Simple_repeat Simple_repeat 6 36 -78 1867 152 38 0 chr9 42755209 42755499 -99515945 + AluSx SINE Alu 1 301 -11 260 209 57 19 chr9 42755499 42755570 -99515874 + (TATATG)n Simple_repeat Simple_repeat 36 114 0 1667 167 22 22 chr9 42755870 42756182 -99515262 - MER44D DNA MER2_type -1 604 421 1850 157 3 40 chr9 42756183 42756576 -99514868 - AluSx SINE Alu 0 381 1 264 252 68 0 chr9 42756649 42756752 -99514692 + HAL1b LINE L1 1234 1343 -5 1836 169 11 0 chr9 42756887 42757166 -99514278 + AluSx SINE Alu 3 284 -28 1902 138 7 0 chr9 42757255 42757530 -99513914 + AluSx SINE Alu 1 277 -35 423 0 0 0 chr9 42757534 42757581 -99513863 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 189 0 0 0 chr9 42758671 42758692 -99512752 + (CAAAAA)n Simple_repeat Simple_repeat 3 23 0 1542 197 14 7 chr9 42759520 42759810 -99511634 - AluJb SINE Alu -20 292 1 555 160 0 3 chr9 42759936 42760173 -99511271 + AluSx SINE Alu 1 311 -1 1475 183 47 19 chr9 42760258 42760580 -99510864 - L1MB8 LINE L1 0 6178 5848 837 255 49 75 chr9 42761015 42761498 -99509946 - PABL_B LTR ERV1 -42 625 1 1982 151 3 0 chr9 42761749 42762061 -99509383 - AluSq SINE Alu 0 313 1 2085 124 3 0 chr9 42762063 42762353 -99509091 - AluSx SINE Alu -21 291 1 1222 123 0 6 chr9 42762356 42762535 -99508909 - AluSq SINE Alu -5 308 131 23 0 0 0 chr9 42762537 42762560 -99508884 + AT_rich Low_complexity Low_complexity 1 23 0 499 115 13 0 chr9 42762810 42762888 -99508556 + AluY SINE Alu 217 295 -16 21 0 0 0 chr9 42762982 42763003 -99508441 + AT_rich Low_complexity Low_complexity 1 21 0 2027 131 3 16 chr9 42763175 42763480 -99507964 + AluSx SINE Alu 1 301 -11 1986 141 7 0 chr9 42763787 42764206 -99507238 + AluSx SINE Alu 4 424 0 1829 169 6 10 chr9 42765018 42765331 -99506113 - AluJb SINE Alu 0 312 1 2143 113 7 10 chr9 42765399 42765714 -99505730 + AluSp SINE Alu 1 314 0 1880 170 0 26 chr9 42765789 42766100 -99505344 + AluJo SINE Alu 1 303 -9 2113 138 0 0 chr9 42766100 42766396 -99505048 + AluSc SINE Alu 1 296 -13 1493 165 34 4 chr9 42766396 42766662 -99504782 - MER54A LTR ERVL -627 274 1 1493 151 140 0 chr9 42766839 42767104 -99504340 - AluSx SINE Alu 0 302 1 2263 107 3 0 chr9 42767704 42768002 -99503442 - AluSp SINE Alu -14 299 1 1475 166 6 94 chr9 42768007 42768338 -99503106 - AluSq SINE Alu -11 302 1 275 225 0 56 chr9 42768791 42768862 -99502582 - AluJ/FRAM SINE Alu -11 291 225 27 62 0 0 chr9 42768884 42768932 -99502512 + AT_rich Low_complexity Low_complexity 1 48 0 217 273 33 83 chr9 42769255 42769376 -99502068 + L2 LINE L2 3193 3307 -6 531 323 102 43 chr9 42769576 42770065 -99501379 - LTR33A LTR ERVL -4 519 2 1982 144 7 0 chr9 42770129 42770427 -99501017 + AluSp SINE Alu 14 313 0 849 183 12 47 chr9 42770427 42770596 -99500848 + AluSg/x SINE Alu 132 294 -16 759 178 0 30 chr9 42770807 42770942 -99500502 + FLAM_C SINE Alu 3 133 -10 416 87 43 11 chr9 42770942 42771034 -99500410 + A-rich Low_complexity Low_complexity 4 98 0 331 167 0 56 chr9 42771060 42771132 -99500312 + AluJ/FRAM SINE Alu 225 292 -10 1378 197 4 0 chr9 42771588 42771837 -99499607 + AluJb SINE Alu 1 250 -62 231 154 0 0 chr9 42771837 42771876 -99499568 + Alu SINE Alu 39 77 -226 1444 125 68 17 chr9 42771976 42772304 -99499140 - MER4B LTR ERV1 -264 502 1 450 239 181 18 chr9 42772304 42772530 -99498914 - L2 LINE L2 -2993 321 59 359 185 37 0 chr9 42772911 42772992 -99498452 + LTR16A1 LTR ERVL 374 457 0 334 308 71 44 chr9 42774395 42774577 -99496867 - L1ME3A LINE L1 -14 6156 5970 852 119 30 0 chr9 42774609 42774743 -99496701 + AluSg/x SINE Alu 154 291 -19 643 179 38 0 chr9 42774772 42774878 -99496566 - AluSq/x SINE Alu -202 111 2 265 268 57 8 chr9 42775007 42775130 -99496314 - HAL1b LINE L1 -5 1343 1215 1865 189 0 0 chr9 42775186 42775633 -99495811 + AluSx SINE Alu 4 450 0 1442 183 12 61 chr9 42775633 42775961 -99495483 + MER44D DNA MER2_type 421 604 -1 234 197 49 0 chr9 42776241 42776302 -99495142 + (TA)n Simple_repeat Simple_repeat 2 65 0 1865 172 3 0 chr9 42776319 42776616 -99494828 - AluSx SINE Alu -14 298 1 1869 174 3 0 chr9 42776649 42776943 -99494501 + AluJb SINE Alu 1 295 -17 2006 194 21 5 chr9 42777063 42777586 -99493858 + MER77 LTR ERV1 2 577 -28 2279 100 0 16 chr9 42777828 42778139 -99493305 - AluY SINE Alu -5 306 1 2313 120 3 0 chr9 42778284 42778593 -99492851 - AluSg SINE Alu 0 310 1 2342 158 19 12 chr9 42778665 42779083 -99492361 - L1PA15 LINE L1 0 6165 5745 1941 246 9 14 chr9 42779093 42779528 -99491916 + L1P LINE L1 4730 5163 -983 1915 117 19 0 chr9 42779528 42779794 -99491650 + AluSg SINE Alu 40 310 0 1941 246 9 14 chr9 42779794 42779920 -99491524 + L1P LINE L1 5163 5288 -858 259 221 0 39 chr9 42779923 42780000 -99491444 + MER89 LTR ERV1 486 559 0 1849 142 7 21 chr9 42780055 42780343 -99491101 + AluSg SINE Alu 3 286 -24 2044 139 0 3 chr9 42780351 42780646 -99490798 + AluSg SINE Alu 1 294 -16 1457 115 5 0 chr9 42780646 42780860 -99490584 + AluSq SINE Alu 100 314 0 1932 172 0 25 chr9 42780935 42781249 -99490195 + AluJo SINE Alu 1 306 -6 2016 146 14 0 chr9 42781249 42781543 -99489901 + AluSc SINE Alu 1 298 -11 1422 162 34 4 chr9 42781543 42781809 -99489635 - MER54A LTR ERVL -627 274 1 1546 142 142 0 chr9 42781992 42782252 -99489192 - AluSx SINE Alu -5 297 1 2268 111 3 0 chr9 42782852 42783150 -99488294 - AluSp SINE Alu -14 299 1 1116 177 5 20 chr9 42783155 42783353 -99488091 - AluSg/x SINE Alu -16 294 100 1623 151 8 0 chr9 42783353 42783605 -99487839 + AluSp SINE Alu 60 313 0 841 184 12 48 chr9 42783605 42783773 -99487671 + AluSg/x SINE Alu 132 293 -17 308 198 64 31 chr9 42783984 42784102 -99487342 + AluJo SINE Alu 3 116 -186 1061 14 35 0 chr9 42784102 42784244 -99487200 + (TAAAA)n Simple_repeat Simple_repeat 2 148 0 308 198 64 31 chr9 42784244 42784342 -99487102 + AluJo SINE Alu 116 292 -10 1412 189 4 0 chr9 42784799 42785043 -99486401 + AluJb SINE Alu 1 245 -67 1968 126 7 7 chr9 42785043 42785321 -99486123 + AluSx SINE Alu 34 311 -1 1241 224 17 23 chr9 42785364 42785663 -99485781 + AluJb SINE Alu 15 311 -1 3896 178 82 30 chr9 42785719 42786450 -99484994 - MER21B LTR ERV1 -1 862 83 2182 112 16 32 chr9 42786450 42786763 -99484681 + AluSx SINE Alu 3 310 -2 3896 178 82 30 chr9 42786763 42786851 -99484593 - MER21B LTR ERV1 -780 83 1 1732 169 20 48 chr9 42787152 42787549 -99483895 - LTR25 LTR ERV1 -47 747 362 818 142 148 39 chr9 42787549 42787877 -99483567 + LTR46 LTR ERV1 1 460 0 592 200 35 0 chr9 42787877 42787980 -99483464 - LTR25 LTR ERV1 -438 356 250 384 165 23 120 chr9 42787974 42788107 -99483337 - MER61E LTR ERV1 -417 152 33 * 1369 81 17 0 chr9 42788747 42788920 -99482524 + AluSg/x SINE Alu 114 289 -21 494 299 130 42 chr9 42788922 42789276 -99482168 - L2 LINE L2 -82 3231 2847 277 105 0 0 chr9 42789328 42789366 -99482078 - Alu SINE Alu -264 38 1 2358 107 3 0 chr9 42789739 42790048 -99481396 - AluSx SINE Alu -2 310 1 1807 180 3 0 chr9 42790086 42790392 -99481052 - AluSx SINE Alu -1 311 5 1973 149 10 3 chr9 42790624 42790932 -99480512 + AluSx SINE Alu 1 310 -2 1611 186 136 45 chr9 42790935 42791220 -99480224 - MER106B DNA MER1_type -527 532 274 1816 159 10 7 chr9 42791220 42791515 -99479929 - AluSx SINE Alu -16 296 1 1611 186 136 45 chr9 42791515 42791613 -99479831 - MER106B DNA MER1_type -785 274 186 2242 130 0 0 chr9 42791613 42791914 -99479530 + AluSx SINE Alu 1 301 -11 1611 186 136 45 chr9 42791914 42792014 -99479430 - MER106B DNA MER1_type -873 186 4 2214 125 0 0 chr9 42792016 42792312 -99479132 + AluSx SINE Alu 1 296 -16 948 202 13 111 chr9 42792328 42792471 -99478973 + L1MC4a LINE L1 6602 6654 -1154 750 150 0 57 chr9 42792471 42792611 -99478833 - FLAM_C SINE Alu -1 132 1 948 202 13 111 chr9 42792611 42792829 -99478615 + L1MC4a LINE L1 6654 6892 -916 2121 127 7 3 chr9 42792829 42793128 -99478316 - AluSq SINE Alu -12 301 2 1296 107 5 88 chr9 42793466 42793711 -99477733 - AluSp SINE Alu 0 313 100 2048 136 0 3 chr9 42793711 42794005 -99477439 - AluSg SINE Alu -17 293 1 1876 139 7 21 chr9 42794013 42794301 -99477143 - AluSg SINE Alu -24 286 3 259 221 0 39 chr9 42794356 42794433 -99477011 - MER89 LTR ERV1 0 559 486 2013 238 9 14 chr9 42794436 42794562 -99476882 - L1P LINE L1 -858 5288 5163 1907 117 19 0 chr9 42794562 42794827 -99476617 - AluSg SINE Alu -1 309 40 2013 238 9 14 chr9 42794827 42795262 -99476182 - L1P LINE L1 -983 5163 4730 2342 158 19 12 chr9 42795272 42795690 -99475754 + L1PA15 LINE L1 5745 6165 0 2346 113 3 0 chr9 42795762 42796071 -99475373 + AluSg SINE Alu 1 310 0 2205 90 0 17 chr9 42796214 42796535 -99474909 + AluY SINE Alu 1 316 0 1994 196 19 5 chr9 42796783 42797307 -99474137 - MER77 LTR ERV1 -28 577 2 1869 174 3 0 chr9 42797427 42797721 -99473723 - AluJb SINE Alu -17 295 1 246 214 71 9 chr9 42797721 42797754 -99473690 + (TA)n Simple_repeat Simple_repeat 2 32 -88 1865 172 3 0 chr9 42797754 42798051 -99473393 + AluSx SINE Alu 1 298 -14 246 214 71 9 chr9 42798051 42798129 -99473315 + (TA)n Simple_repeat Simple_repeat 31 120 0 1442 183 12 61 chr9 42798409 42798737 -99472707 - MER44D DNA MER2_type -1 604 421 1847 192 0 0 chr9 42798737 42799184 -99472260 - AluSx SINE Alu 0 450 4 265 268 57 8 chr9 42799240 42799363 -99472081 + HAL1b LINE L1 1215 1343 -5 643 179 38 0 chr9 42799492 42799598 -99471846 + AluSq/x SINE Alu 2 111 -201 896 118 22 0 chr9 42799627 42799762 -99471682 - AluSg/x SINE Alu -19 293 156 327 319 66 39 chr9 42799794 42799976 -99471468 + L1ME3A LINE L1 5970 6156 -14 182 257 29 43 chr9 42800118 42800188 -99471256 - L2 LINE L2 -27 3245 3177 527 214 166 62 chr9 42801381 42801689 -99469755 - LTR16A1 LTR ERVL 0 457 118 481 240 187 18 chr9 42801843 42802068 -99469376 + L2 LINE L2 59 321 -2993 2463 121 45 49 chr9 42802068 42802668 -99468776 + MER4E LTR ERV1 1 766 0 480 270 83 34 chr9 42802737 42802941 -99468503 + L2 LINE L2 651 864 -2450 740 71 71 5 chr9 42802945 42803099 -99468345 + LTR19A LTR ERV1 7 241 -245 246 119 0 0 chr9 42803099 42803141 -99468303 + LTR19A LTR ERV1 445 486 0 239 231 92 15 chr9 42803141 42803271 -99468173 + L2 LINE L2 879 1018 -2296 209 291 63 38 chr9 42803287 42803445 -99467999 - L3 LINE CR1 -315 1262 1101 * 264 303 148 16 chr9 42803420 42803542 -99467902 + L2 LINE L2 3163 3300 -13 528 161 60 0 chr9 42803557 42803706 -99467738 + (TGGA)n Simple_repeat Simple_repeat 4 161 0 763 152 35 10 chr9 42803736 42804237 -99467207 + (TGGA)n Simple_repeat Simple_repeat 1 513 0 690 191 21 9 chr9 42804256 42804588 -99466856 + (TGGA)n Simple_repeat Simple_repeat 1 336 0 1463 213 10 10 chr9 42805381 42805691 -99465753 + AluJo SINE Alu 1 310 -2 298 281 13 0 chr9 42806090 42806177 -99465267 - MIR SINE MIR -65 143 80 328 308 32 32 chr9 42807212 42807397 -99464047 + L2 LINE L2 3111 3295 -18 754 139 0 0 chr9 42807397 42807512 -99463932 - AluSx SINE Alu -4 306 192 1106 106 0 0 chr9 42807513 42807654 -99463790 - AluSx SINE Alu -171 141 1 779 147 0 29 chr9 42807707 42807843 -99463601 + FLAM_C SINE Alu 12 143 0 1113 321 88 18 chr9 42807860 42808595 -99462849 - L1M4 LINE L1 -1492 4654 3868 549 273 74 24 chr9 42808839 42809176 -99462268 + MER74B LTR ERVL 213 566 -56 253 88 0 0 chr9 42809302 42809336 -99462108 - AluSg/x SINE Alu -192 108 75 * 1572 250 120 25 chr9 42809326 42809499 -99461945 + MER69B DNA AcHobo 520 675 -1851 1698 161 50 4 chr9 42809499 42809778 -99461666 - AluJb SINE Alu -20 292 1 1572 250 120 25 chr9 42809778 42810211 -99461233 + MER69B DNA AcHobo 675 1184 -42 400 246 100 4 chr9 42810726 42810849 -99460595 + MER20 DNA MER1_type 35 162 -57 234 156 44 0 chr9 42811196 42811241 -99460203 - MIR SINE MIR -108 154 108 335 194 15 0 chr9 42811935 42812002 -99459442 + MIR SINE MIR 77 144 -118 2046 115 0 37 chr9 42812044 42812370 -99459074 + AluSq SINE Alu 1 315 0 817 200 6 29 chr9 42812395 42812565 -99458879 + FAM SINE Alu 1 42 -7 683 170 63 68 chr9 42813883 42814166 -99457278 + MSTD LTR MaLR 2 328 -68 2295 117 0 0 chr9 42814166 42814475 -99456969 - AluSx SINE Alu -3 309 1 683 170 63 68 chr9 42814475 42814493 -99456951 + MSTD LTR MaLR 328 345 -51 601 243 14 7 chr9 42814477 42814625 -99456819 - MLT1C LTR MaLR -285 182 34 * 1929 114 0 29 chr9 42814634 42814906 -99456538 - AluSx SINE Alu -14 298 35 638 232 6 17 chr9 42814956 42815133 -99456311 - HAL1b LINE L1 -882 466 292 235 204 0 0 chr9 42815236 42815280 -99456164 + AluJ/monomer SINE Alu 3 46 -120 1271 181 10 50 chr9 42815641 42815821 -99455623 - AluJo SINE Alu -5 307 142 1672 186 56 0 chr9 42815821 42815988 -99455456 - AluJb SINE Alu -11 301 110 256 64 43 0 chr9 42815988 42816035 -99455409 + (TTTG)n Simple_repeat Simple_repeat 4 52 0 1672 186 56 0 chr9 42816035 42816152 -99455292 - AluJb SINE Alu -202 110 1 1271 181 10 50 chr9 42816152 42816269 -99455175 - AluJo SINE Alu -170 142 22 2649 108 4 9 chr9 42816276 42816771 -99454673 - MER41B LTR ERV1 -12 542 1 904 273 22 83 chr9 42817181 42817672 -99453772 + MLT1J LTR MaLR 37 497 -14 658 217 14 7 chr9 42817771 42817914 -99453530 + MER83C LTR ERV1 49 192 -181 228 257 40 0 chr9 42818320 42818394 -99453050 + MER83B LTR ERV1 121 197 -181 822 251 94 0 chr9 42818453 42818676 -99452768 + MER83C LTR ERV1 130 373 0 423 210 39 22 chr9 42818700 42818828 -99452616 - MIR SINE MIR -67 141 61 624 194 0 0 chr9 42821056 42821190 -99450254 + (TCCA)n Simple_repeat Simple_repeat 3 136 0 908 154 6 0 chr9 42821201 42821376 -99450068 + (TCCA)n Simple_repeat Simple_repeat 3 178 0 687 224 0 0 chr9 42821354 42821533 -99449911 + (CCCA)n Simple_repeat Simple_repeat 1 179 0 * 353 234 20 37 chr9 42821835 42821854 -99449590 - ORSL DNA AcHobo -4 271 253 3801 113 11 31 chr9 42821854 42821989 -99449455 - MER4A LTR ERV1 0 600 464 1958 109 0 4 chr9 42821989 42822291 -99449153 - AluSg1 SINE Alu 0 307 7 3801 113 11 31 chr9 42822291 42822766 -99448678 - MER4A LTR ERV1 -136 464 1 353 234 20 37 chr9 42822766 42822963 -99448481 - ORSL DNA AcHobo -22 253 22 3320 161 18 76 chr9 42823436 42824170 -99447274 + LTR8 LTR ERV1 1 691 0 959 305 73 9 chr9 42825494 42825920 -99445524 + L1MC/D LINE L1 5298 5750 -2058 451 143 42 29 chr9 42826120 42826584 -99444860 + (CA)n Simple_repeat Simple_repeat 1 470 0 195 190 11 56 chr9 42826689 42826868 -99444576 + (CA)n Simple_repeat Simple_repeat 2 172 0 317 165 29 29 chr9 42826918 42827088 -99444356 + (CA)n Simple_repeat Simple_repeat 1 170 0 681 273 60 0 chr9 42827371 42827554 -99443890 - MIR SINE MIR -10 252 59 203 321 18 0 chr9 42827641 42827697 -99443747 - MIR SINE MIR -115 93 37 797 81 9 0 chr9 42827734 42827845 -99443599 - HY1 scRNA scRNA 0 112 1 351 213 18 29 chr9 42827954 42828115 -99443329 + MIR SINE MIR 29 260 -2 21 36 0 0 chr9 42828475 42828503 -99442941 + AT_rich Low_complexity Low_complexity 1 28 0 24 85 0 0 chr9 42829178 42829237 -99442207 + AT_rich Low_complexity Low_complexity 1 59 0 337 239 109 0 chr9 42830901 42830993 -99440451 - L2 LINE L2 -10 3303 3202 461 152 0 0 chr9 42831484 42831550 -99439894 + AluJ/FLAM SINE Alu 9 74 -238 261 127 0 55 chr9 42831584 42831639 -99439805 + Alu SINE Alu 251 302 0 771 193 0 0 chr9 42831646 42831781 -99439663 + AluJb SINE Alu 168 302 -10 1639 136 12 0 chr9 42831787 42832044 -99439400 + AluSx SINE Alu 21 280 -32 351 0 0 0 chr9 42832045 42832084 -99439360 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 190 246 18 53 chr9 42833211 42833268 -99438176 - L3 LINE CR1 -8 1569 1515 340 278 59 65 chr9 42833516 42833685 -99437759 + L2 LINE L2 3131 3298 -15 2052 125 0 0 chr9 42833782 42834077 -99437367 - AluSg SINE Alu -15 295 1 1925 107 35 24 chr9 42834727 42835017 -99436427 + AluSq SINE Alu 1 293 -20 661 179 9 0 chr9 42835028 42835134 -99436310 - FLAM_A SINE Alu -35 107 1 568 256 119 12 chr9 42835147 42835315 -99436129 - MIR SINE MIR -64 198 13 262 252 180 18 chr9 42835892 42836003 -99435441 - L2 LINE L2 -2 3270 3142 234 156 44 0 chr9 42836488 42836533 -99434911 - MIR SINE MIR -108 154 108 330 194 15 0 chr9 42837227 42837294 -99434150 + MIR SINE MIR 77 144 -118 1969 108 0 40 chr9 42837336 42837679 -99433765 + AluSq SINE Alu 1 331 0 791 203 43 0 chr9 42837700 42837863 -99433581 + FAM SINE Alu 1 170 -5 721 198 158 33 chr9 42839193 42839481 -99431963 + MSTD LTR MaLR 2 337 -59 2137 115 0 0 chr9 42839481 42839785 -99431659 - AluSx SINE Alu -8 304 1 619 250 14 7 chr9 42839787 42839935 -99431509 - MLT1C LTR MaLR -285 182 34 * 1849 99 0 29 chr9 42839944 42840216 -99431228 - AluSx SINE Alu -14 298 35 621 243 6 17 chr9 42840266 42840443 -99431001 - HAL1b LINE L1 -882 466 292 333 156 250 73 chr9 42840546 42840642 -99430802 + FLAM_A SINE Alu 3 115 -18 2157 104 7 0 chr9 42840729 42841037 -99430407 - AluSg SINE Alu 0 310 1 898 208 14 54 chr9 42841432 42841607 -99429837 - AluJo SINE Alu -6 306 146 1711 158 0 48 chr9 42841607 42841923 -99429521 - AluJb SINE Alu -11 301 1 898 208 14 54 chr9 42841923 42842041 -99429403 - AluJo SINE Alu -166 146 25 726 158 0 0 chr9 42842051 42842165 -99429279 - MER41B LTR ERV1 -12 623 510 2751 84 5 11 chr9 42842167 42842546 -99428898 - MER41B LTR ERV1 -258 377 1 227 121 0 0 chr9 42842547 42842580 -99428864 - AluJo SINE Alu -269 33 1 305 276 264 23 chr9 42842838 42843012 -99428432 + L1ME2 LINE L1 5912 6127 -37 413 111 48 0 chr9 42843018 42843081 -99428363 + MLT1J LTR MaLR 6 71 -396 1009 269 22 83 chr9 42843664 42844155 -99427289 + MLT1J LTR MaLR 37 497 -14 700 217 14 7 chr9 42844254 42844397 -99427047 + MER83C LTR ERV1 49 192 -181 234 192 39 0 chr9 42844575 42844627 -99426817 + MER83B LTR ERV1 134 187 -191 887 247 94 0 chr9 42844636 42844859 -99426585 + MER83C LTR ERV1 130 373 0 413 217 16 28 chr9 42844889 42845011 -99426433 - MIR SINE MIR -67 141 61 337 165 28 34 chr9 42847307 42847483 -99423961 + (CA)n Simple_repeat Simple_repeat 2 176 0 290 182 20 45 chr9 42847533 42847947 -99423497 + (CA)n Simple_repeat Simple_repeat 1 403 0 235 176 12 53 chr9 42847966 42848136 -99423308 + (CA)n Simple_repeat Simple_repeat 2 164 0 423 132 15 49 chr9 42848171 42848443 -99423001 + (CA)n Simple_repeat Simple_repeat 1 262 0 222 164 14 50 chr9 42848490 42848630 -99422814 + (CA)n Simple_repeat Simple_repeat 2 136 0 202 167 8 56 chr9 42848665 42848791 -99422653 + (CA)n Simple_repeat Simple_repeat 1 120 0 264 217 28 38 chr9 42848812 42848918 -99422526 + (CA)n Simple_repeat Simple_repeat 2 106 0 328 242 85 7 chr9 42848930 42849083 -99422361 + L1MC4a LINE L1 6067 6231 -1577 269 286 31 56 chr9 42849487 42849648 -99421796 + L1MC4 LINE L1 6831 6987 -1055 1086 209 72 11 chr9 42849820 42850244 -99421200 + MLT1D LTR MaLR 5 501 -4 264 319 33 66 chr9 42850633 42850842 -99420602 - L2 LINE L2 -883 2431 2229 1915 137 7 3 chr9 42850842 42851134 -99420310 + AluSc SINE Alu 1 293 -16 264 319 33 66 chr9 42851134 42851165 -99420279 - L2 LINE L2 -1085 2229 2199 1199 249 39 21 chr9 42851522 42851852 -99419592 - MER4D LTR ERV1 0 903 568 1525 177 14 7 chr9 42851919 42852202 -99419242 - MER49 LTR ERV1 -638 285 1 1991 93 0 4 chr9 42852716 42852994 -99418450 - AluSg SINE Alu -33 277 1 5547 168 11 16 chr9 42853069 42854132 -99417312 - L1 LINE L1 -1579 4567 3510 437 268 70 66 chr9 42854922 42855165 -99416279 + L1MB2 LINE L1 174 417 -5896 5455 233 52 29 chr9 42855167 42856437 -99415007 + L1MB2 LINE L1 2052 3339 -3043 2135 98 7 0 chr9 42856437 42856733 -99414711 + AluY SINE Alu 1 298 -13 5455 233 52 29 chr9 42856733 42857665 -99413779 + L1MB2 LINE L1 3339 4248 -2134 341 191 26 29 chr9 42857715 42857808 -99413636 + L1MB2 LINE L1 4233 4324 -2058 * 42411 60 7 2 chr9 42857804 42863926 -99407518 + L1PA5 LINE L1 2 6154 0 4671 190 55 30 chr9 42863935 42863965 -99407479 + L1MB2 LINE L1 4312 4340 -2067 2287 55 3 35 chr9 42863965 42864275 -99407169 - AluY SINE Alu -11 300 1 4671 190 55 30 chr9 42864275 42864649 -99406795 + L1MB2 LINE L1 4340 4703 -1704 1932 127 0 10 chr9 42864649 42864968 -99406476 + AluJb SINE Alu 1 312 0 4671 190 55 30 chr9 42864968 42866599 -99404845 + L1MB2 LINE L1 4703 6389 -18 2155 72 3 28 chr9 42866613 42866931 -99404513 - AluY SINE Alu -1 310 1 228 341 0 0 chr9 42867047 42867129 -99404315 - MER81 DNA DNA -16 98 17 484 194 21 11 chr9 42867744 42867837 -99403607 - MER20 DNA MER1_type -125 94 1 2394 55 3 3 chr9 42868093 42868403 -99403041 + AluY SINE Alu 1 310 -1 328 173 44 118 chr9 42868554 42868586 -99402858 + L1ME LINE L1 5638 5671 -491 2370 62 0 13 chr9 42868586 42868891 -99402553 + AluY SINE Alu 1 301 -10 328 173 44 118 chr9 42868891 42869040 -99402404 + L1ME LINE L1 5671 5800 -362 2485 49 0 0 chr9 42869064 42869370 -99402074 + AluY SINE Alu 1 306 -5 22 35 0 0 chr9 42870271 42870300 -99401144 + AT_rich Low_complexity Low_complexity 1 29 0 2197 97 0 13 chr9 42870861 42871169 -99400275 - AluY SINE Alu -7 304 1 23 33 0 0 chr9 42871192 42871222 -99400222 + AT_rich Low_complexity Low_complexity 1 30 0 441 335 37 5 chr9 42871634 42871822 -99399622 - L1M4 LINE L1 -1693 4453 4260 285 29 0 0 chr9 42871830 42871864 -99399580 + (CA)n Simple_repeat Simple_repeat 2 35 0 6804 61 2 24 chr9 42871864 42873256 -99398188 - L1PA7 LINE L1 -20 6134 4774 6634 192 47 31 chr9 42873341 42875498 -99395946 - L1MB5 LINE L1 -6 6168 3959 2048 121 0 36 chr9 42875498 42875804 -99395640 - AluSg SINE Alu -15 295 1 6634 192 47 31 chr9 42875804 42876211 -99395233 - L1MB5 LINE L1 -2215 3959 3560 4029 92 21 9 chr9 42876217 42876790 -99394654 - L1PB2 LINE L1 -2 6149 5570 2421 80 0 6 chr9 42876790 42877103 -99394341 + AluY SINE Alu 1 311 0 6979 170 9 17 chr9 42877144 42878366 -99393078 - L1PB2 LINE L1 -565 5586 4384 2186 135 0 3 chr9 42878366 42878678 -99392766 - AluSx SINE Alu -1 311 1 6979 170 9 17 chr9 42878678 42879131 -99392313 - L1PB2 LINE L1 -1767 4384 3929 6666 201 20 14 chr9 42879132 42880636 -99390808 + L1PB2 LINE L1 2398 3910 -2236 371 206 0 49 chr9 42880629 42880731 -99390713 - L1MB5 LINE L1 -2565 3581 3485 * 908 154 6 0 chr9 42880871 42881046 -99390398 + (TCCA)n Simple_repeat Simple_repeat 3 178 0 666 229 0 0 chr9 42881024 42881203 -99390241 + (CCCA)n Simple_repeat Simple_repeat 1 179 0 * 347 234 20 37 chr9 42881505 42881524 -99389920 - ORSL DNA AcHobo -4 271 253 3788 113 11 31 chr9 42881524 42881659 -99389785 - MER4A LTR ERV1 0 600 464 2062 113 0 4 chr9 42881659 42881966 -99389478 - AluSg1 SINE Alu 0 312 7 3788 113 11 31 chr9 42881966 42882441 -99389003 - MER4A LTR ERV1 -136 464 1 347 234 20 37 chr9 42882441 42882638 -99388806 - ORSL DNA AcHobo -22 253 22 3298 161 18 76 chr9 42883111 42883845 -99387599 + LTR8 LTR ERV1 1 691 0 920 305 73 9 chr9 42885091 42885517 -99385927 + L1MC/D LINE L1 5298 5750 -2058 228 323 11 11 chr9 42886090 42886183 -99385261 + MIR SINE MIR 40 132 -76 1059 223 36 8 chr9 42886611 42886862 -99384582 - MIR SINE MIR 0 262 5 673 215 30 33 chr9 42886864 42887066 -99384378 - MIR SINE MIR -3 259 64 988 294 39 28 chr9 42889626 42890163 -99381281 - SST1 Satellite centromeric -534 1029 487 1855 144 4 0 chr9 42890164 42890428 -99381016 - AluSp SINE Alu -48 265 1 587 233 23 114 chr9 42890485 42890704 -99380740 + MER115 DNA AcHobo 445 643 -50 498 101 82 6 chr9 42890887 42891045 -99380399 + (TATAA)n Simple_repeat Simple_repeat 5 174 0 33 56 0 0 chr9 42891045 42891099 -99380345 + AT_rich Low_complexity Low_complexity 1 54 0 3554 154 3 43 chr9 42891099 42891605 -99379839 + Tigger1 DNA MER2_type 1801 2277 -141 2025 118 39 0 chr9 42891605 42891885 -99379559 - AluSx SINE Alu -20 292 2 3554 154 3 43 chr9 42891885 42892022 -99379422 + Tigger1 DNA MER2_type 2277 2418 0 377 267 22 22 chr9 42892025 42892160 -99379284 - LTR16C LTR ERVL -17 474 340 1157 270 109 28 chr9 42892507 42893053 -99378391 + MER115 DNA AcHobo 15 643 -50 1737 113 14 18 chr9 42893461 42893745 -99377699 - L1MA4 LINE L1 0 6300 6018 333 245 118 98 chr9 42894069 42894273 -99377171 - MIR SINE MIR -11 251 44 1980 151 0 7 chr9 42894373 42894672 -99376772 + AluSx SINE Alu 1 297 -15 274 307 50 0 chr9 42894769 42894870 -99376574 - L2 LINE L2 -15 3298 3193 352 335 56 19 chr9 42895420 42895635 -99375809 - MIR SINE MIR -12 250 28 33 90 0 0 chr9 42896019 42896108 -99375336 + AT_rich Low_complexity Low_complexity 1 89 0 576 111 0 11 chr9 42896292 42896382 -99375062 - L1PA16 LINE L1 -9 6157 6069 743 181 0 51 chr9 42896620 42896758 -99374686 + FLAM_A SINE Alu 1 131 -2 1475 221 21 7 chr9 42896759 42897087 -99374357 - MER93a LTR ERV1 -7 395 17 201 74 0 0 chr9 42897231 42897258 -99374186 + (CTTAT)n Simple_repeat Simple_repeat 5 31 0 557 212 0 18 chr9 42897610 42897723 -99373721 - AluSp SINE Alu -101 212 102 1831 155 3 7 chr9 42897815 42898105 -99373339 + AluJb SINE Alu 1 289 -23 2238 128 0 0 chr9 42898955 42899260 -99372184 + AluSq SINE Alu 5 309 -4 496 303 77 30 chr9 42899391 42899728 -99371716 + L1ME3A LINE L1 5421 5773 -389 44 35 0 0 chr9 42899742 42899800 -99371644 + AT_rich Low_complexity Low_complexity 1 58 0 1831 161 0 0 chr9 42899800 42900086 -99371358 - AluSx SINE Alu -24 288 3 2024 127 16 38 chr9 42900088 42900261 -99371183 - AluSx SINE Alu -4 308 144 1700 170 7 3 chr9 42900261 42900544 -99370900 - AluY SINE Alu -20 291 8 2024 127 16 38 chr9 42900544 42900685 -99370759 - AluSx SINE Alu -168 144 1 258 226 54 21 chr9 42900725 42900818 -99370626 + L1ME3A LINE L1 5852 5947 -223 1474 143 4 29 chr9 42900866 42901104 -99370340 + AluSg/x SINE Alu 66 297 -15 21 36 0 0 chr9 42901104 42901132 -99370312 + AT_rich Low_complexity Low_complexity 1 28 0 289 129 50 2 chr9 42901462 42901704 -99369740 + AluSq SINE Alu 1 292 -11 3314 177 40 16 chr9 42901970 42902663 -99368781 + L1MC2 LINE L1 5616 6328 -16 2145 112 0 7 chr9 42902663 42902982 -99368462 - AluY SINE Alu 0 311 1 3314 177 40 16 chr9 42902982 42902995 -99368449 + L1MC2 LINE L1 6328 6339 -5 993 163 0 0 chr9 42902995 42903142 -99368302 - AluJb SINE Alu -29 283 137 1365 206 23 5 chr9 42903147 42903462 -99367982 + L1MC/D LINE L1 5370 5629 -715 40 0 0 0 chr9 42903462 42903502 -99367942 + AT_rich Low_complexity Low_complexity 1 40 0 23 0 0 0 chr9 42903681 42903704 -99367740 + AT_rich Low_complexity Low_complexity 1 23 0 866 222 14 32 chr9 42903977 42904193 -99367251 + AluSx SINE Alu 1 212 -100 235 182 0 0 chr9 42904202 42904246 -99367198 + Charlie1 DNA MER1_type 2718 2761 0 499 203 24 24 chr9 42904254 42904377 -99367067 - L2 LINE L2 -4 3309 3187 1040 122 0 0 chr9 42904415 42904554 -99366890 + AluSq/x SINE Alu 3 141 -171 2203 93 0 45 chr9 42904554 42904867 -99366577 + AluSx SINE Alu 1 299 -13 682 158 8 23 chr9 42905006 42905177 -99366267 - AluSp/q SINE Alu 0 313 176 2075 118 0 0 chr9 42905233 42905512 -99365932 + AluSg SINE Alu 29 307 -3 228 323 77 8 chr9 42905565 42905695 -99365749 + HAL1 LINE L1 2219 2357 -150 2290 214 117 8 chr9 42905900 42906420 -99365024 - MER77 LTR ERV1 -28 577 1 233 308 15 0 chr9 42906436 42906501 -99364943 + L1MC4 LINE L1 5511 5576 -2232 1843 176 3 7 chr9 42906532 42906834 -99364610 - AluJb SINE Alu -11 301 1 1901 156 10 3 chr9 42906867 42907175 -99364269 + AluSx SINE Alu 1 310 -2 1811 182 136 43 chr9 42907178 42907463 -99363981 - MER106B DNA MER1_type -527 532 275 1769 163 10 7 chr9 42907463 42907758 -99363686 - AluSx SINE Alu -16 296 1 1811 182 136 43 chr9 42907758 42907855 -99363589 - MER106B DNA MER1_type -784 275 188 2177 134 0 0 chr9 42907855 42908154 -99363290 + AluSx SINE Alu 1 299 -13 1811 182 136 43 chr9 42908154 42908254 -99363190 - MER106B DNA MER1_type -871 188 4 2173 130 0 0 chr9 42908256 42908555 -99362889 + AluSx SINE Alu 1 299 -13 1020 221 19 102 chr9 42908571 42908714 -99362730 + L1MC4 LINE L1 6646 6799 -1243 729 150 0 57 chr9 42908714 42908854 -99362590 - FLAM_C SINE Alu -1 132 1 1020 221 19 102 chr9 42908854 42909072 -99362372 + L1MC4 LINE L1 6799 6977 -1065 2077 130 7 3 chr9 42909072 42909371 -99362073 - AluSq SINE Alu -12 301 2 1289 102 5 88 chr9 42909709 42909950 -99361494 - AluSp SINE Alu 0 313 100 2079 131 0 3 chr9 42909950 42910247 -99361197 - AluSg SINE Alu -14 296 1 1807 149 7 24 chr9 42910255 42910544 -99360900 - AluSg SINE Alu -24 286 3 274 221 0 39 chr9 42910599 42910676 -99360768 - MER89 LTR ERV1 0 559 486 2112 237 9 14 chr9 42910679 42910805 -99360639 - L1P LINE L1 -858 5288 5163 1835 114 19 8 chr9 42910805 42911068 -99360376 - AluSg SINE Alu -5 305 40 2112 237 9 14 chr9 42911068 42911503 -99359941 - L1P LINE L1 -983 5163 4730 2345 156 19 12 chr9 42911513 42911931 -99359513 + L1PA15 LINE L1 5745 6165 0 2203 123 3 3 chr9 42912003 42912312 -99359132 + AluSg1 SINE Alu 1 309 0 2244 104 0 13 chr9 42912456 42912765 -99358679 + AluY SINE Alu 1 305 -6 2148 196 19 5 chr9 42913012 42913540 -99357904 - MER77 LTR ERV1 -28 577 2 1811 177 3 0 chr9 42913660 42913954 -99357490 - AluJb SINE Alu -17 295 1 252 188 47 0 chr9 42913955 42913987 -99357457 + (TA)n Simple_repeat Simple_repeat 1 30 -396 1774 182 3 0 chr9 42913987 42914284 -99357160 + AluSx SINE Alu 1 298 -14 252 188 47 0 chr9 42914284 42914362 -99357082 + (TA)n Simple_repeat Simple_repeat 30 426 0 1724 166 23 10 chr9 42914638 42914946 -99356498 - MER44D DNA MER2_type -1 604 421 1851 182 0 0 chr9 42914946 42915368 -99356076 - AluSx SINE Alu 0 425 4 294 276 52 15 chr9 42915412 42915546 -99355898 + HAL1b LINE L1 1205 1343 -5 603 189 38 0 chr9 42915675 42915781 -99355663 + AluSq/x SINE Alu 2 111 -201 849 127 22 0 chr9 42915810 42915944 -99355500 - AluSg/x SINE Alu -20 292 156 231 280 77 50 chr9 42915976 42916158 -99355286 + L1ME3A LINE L1 5970 6156 -14 539 208 169 65 chr9 42917563 42917871 -99353573 - LTR16A1 LTR ERVL 0 457 118 381 240 187 18 chr9 42918025 42918250 -99353194 + L2 LINE L2 59 321 -2993 674 97 52 37 chr9 42918250 42918384 -99353060 + MER4B LTR ERV1 1 136 -474 799 191 7 0 chr9 42919758 42919910 -99351534 + L1 LINE L1 4144 4296 -1850 363 181 0 0 chr9 42919910 42919981 -99351463 + L1MA5A LINE L1 6226 6297 0 25 31 0 0 chr9 42920054 42920086 -99351358 + AT_rich Low_complexity Low_complexity 1 32 0 2421 65 0 3 chr9 42920115 42920409 -99351035 + AluY SINE Alu 1 293 -18 2312 92 0 3 chr9 42920770 42921063 -99350381 - AluSc SINE Alu -17 292 1 23 0 0 0 chr9 42921201 42921224 -99350220 + AT_rich Low_complexity Low_complexity 1 23 0 2226 51 0 0 chr9 42921501 42921795 -99349649 - AluY SINE Alu 0 321 28 431 88 0 0 chr9 42921742 42921799 -99349645 - AluY SINE Alu -231 80 24 830 258 41 54 chr9 42922314 42922766 -99348678 + MLT1C LTR MaLR 2 466 -1 191 139 28 0 chr9 42922767 42922803 -99348641 - L2 LINE L2 -31 3241 3205 274 308 30 30 chr9 42922892 42923025 -99348419 - L2 LINE L2 -4 3309 3177 2230 115 0 0 chr9 42923486 42923782 -99347662 + AluSq SINE Alu 1 296 -17 342 205 248 31 chr9 42925323 42925484 -99345960 + L2 LINE L2 3118 3313 0 2736 16 0 19 chr9 42925716 42926030 -99345414 - AluYa5 SINE Alu -3 308 1 317 285 165 45 chr9 42926993 42927193 -99344251 - MIR SINE MIR -19 243 20 726 320 62 49 chr9 42927453 42927841 -99343603 + L1MB2 LINE L1 413 805 -5498 261 0 0 0 chr9 42928009 42928038 -99343406 + (T)n Simple_repeat Simple_repeat 1 29 0 4941 227 77 73 chr9 42928283 42928601 -99342843 + L1MB2 LINE L1 773 1088 -5319 2237 125 0 22 chr9 42928601 42928921 -99342523 + AluSq SINE Alu 1 313 0 2360 97 0 3 chr9 42928922 42929232 -99342212 + AluY SINE Alu 1 309 -2 4941 227 77 73 chr9 42929232 42931169 -99340275 + L1MB2 LINE L1 1088 3016 -3391 1409 128 0 10 chr9 42931169 42931372 -99340072 - AluY SINE Alu -22 289 89 4941 227 77 73 chr9 42931372 42931602 -99339842 + L1MB2 LINE L1 3016 3244 -3163 2416 93 0 3 chr9 42931602 42931913 -99339531 + AluY SINE Alu 1 310 -1 4941 227 77 73 chr9 42931913 42932168 -99339276 + L1MB2 LINE L1 3244 3497 -2910 2429 82 0 0 chr9 42932168 42932474 -99338970 + AluY SINE Alu 1 306 -5 4941 227 77 73 chr9 42932474 42933237 -99338207 + L1MB2 LINE L1 3497 4256 -2151 1488 97 97 0 chr9 42933237 42933474 -99337970 - L1MA8 LINE L1 0 6291 6032 4941 227 77 73 chr9 42933474 42933672 -99337772 + L1MB2 LINE L1 4256 4452 -1955 2309 60 21 0 chr9 42933672 42933956 -99337488 + AluY SINE Alu 1 290 -21 4941 227 77 73 chr9 42933956 42935902 -99335542 + L1MB2 LINE L1 4452 6406 -1 1825 191 129 12 chr9 42935951 42936369 -99335075 + MLT1C LTR MaLR 1 467 0 1850 102 4 23 chr9 42937564 42937820 -99333624 + AluSq SINE Alu 1 251 -62 1706 181 0 26 chr9 42938337 42938641 -99332803 + AluJb SINE Alu 1 296 -16 247 283 182 75 chr9 42938902 42939061 -99332383 - MER5A DNA MER1_type 0 178 3 1321 225 112 66 chr9 42939422 42939879 -99331565 + MLT2F LTR ERVL 186 663 0 806 194 0 0 chr9 42939938 42940062 -99331382 + FLAM_C SINE Alu 2 125 -18 3243 232 67 26 chr9 42940068 42941286 -99330158 + L1MEc LINE L1 2037 3268 -2947 2190 116 3 0 chr9 42942094 42942387 -99329057 + AluSx SINE Alu 1 294 -18 288 313 62 51 chr9 42942599 42942713 -99328731 - MER5B DNA MER1_type 0 178 60 2013 130 3 0 chr9 42942713 42943005 -99328439 - AluSx SINE Alu -19 293 1 288 313 62 51 chr9 42943005 42943066 -99328378 - MER5B DNA MER1_type -118 60 1 228 191 79 63 chr9 42943436 42943499 -99327945 - LTR33A LTR ERVL 0 523 460 2374 61 0 0 chr9 42944979 42945286 -99326158 + AluY SINE Alu 1 307 0 611 307 17 6 chr9 42946247 42946426 -99325018 + MLT1J LTR MaLR 10 190 -321 15162 193 18 12 chr9 42946435 42951401 -99320043 + L1PA13 LINE L1 1 5015 -1782 4404 112 13 5 chr9 42951401 42952026 -99319418 + L1PA13 LINE L1 6176 6807 -7 2506 49 3 16 chr9 42952026 42952333 -99319111 + AluY SINE Alu 1 303 -8 210 364 13 0 chr9 42952341 42952418 -99319026 - MIR SINE MIR -151 111 34 22 35 0 0 chr9 42953527 42953556 -99317888 + AT_rich Low_complexity Low_complexity 1 29 0 1508 124 5 0 chr9 42955160 42955378 -99316066 + AluSg/x SINE Alu 89 307 -5 1600 202 6 21 chr9 42955388 42955719 -99315725 + L1PB4 LINE L1 5831 6156 0 1825 203 74 37 chr9 42956645 42957132 -99314312 + MLT1D LTR MaLR 1 505 0 333 0 0 0 chr9 42957924 42957961 -99313483 + (TG)n Simple_repeat Simple_repeat 1 37 0 357 322 8 17 chr9 42958016 42958134 -99313310 + L2 LINE L2 2906 3022 -291 1907 204 104 7 chr9 42958169 42958200 -99313244 - MLT2B2 LTR ERVL -11 504 477 363 44 0 0 chr9 42958200 42958245 -99313199 + (TG)n Simple_repeat Simple_repeat 2 46 0 1907 204 104 7 chr9 42958245 42958663 -99312781 - MLT2B2 LTR ERVL -38 477 11 455 281 48 0 chr9 42958679 42958825 -99312619 + L2 LINE L2 3161 3313 0 328 50 0 0 chr9 42958828 42958868 -99312576 - L1P LINE L1 -4370 1776 1737 3490 19 0 0 chr9 42958869 42959245 -99312199 + L1PA2 LINE L1 5780 6155 0 2142 85 0 0 chr9 42959273 42959544 -99311900 - AluY SINE Alu -3 308 38 2406 190 27 40 chr9 42959845 42960323 -99311121 + MLT2B1 LTR ERVL 1 472 -48 1416 133 9 14 chr9 42961812 42962030 -99309414 + L1PB3 LINE L1 5933 6149 -5 2245 174 16 5 chr9 42962448 42962834 -99308610 + MLT1B LTR MaLR 1 390 0 2401 92 0 0 chr9 42962858 42963162 -99308282 + AluY SINE Alu 1 304 -7 1135 168 0 0 chr9 42963162 42963341 -99308103 + AluSg/x SINE Alu 132 310 0 3699 59 44 8 chr9 42963625 42964102 -99307342 - L1PA8 LINE L1 -1 6171 5678 1361 225 43 3 chr9 42964103 42964405 -99307039 + MER65C LTR ERV1 36 349 -112 1002 146 20 0 chr9 42964409 42964560 -99306884 - LTR12 LTR ERV1 -232 482 329 * 6232 141 1 9 chr9 42964557 42965573 -99305871 - HERV9 LTR ERV1 -7235 1164 72 609 119 13 102 chr9 42965573 42965696 -99305748 - LTR12 LTR ERV1 0 714 582 2355 86 3 32 chr9 42965696 42966011 -99305433 - AluY SINE Alu -5 306 1 609 119 13 102 chr9 42966011 42966037 -99305407 - LTR12 LTR ERV1 -132 582 301 313 304 16 0 chr9 42966037 42966162 -99305282 - LTR30 LTR ERV1 -79 643 517 1212 118 5 62 chr9 42966162 42966373 -99305071 - LTR12 LTR ERV1 -463 251 53 232 250 0 0 chr9 42966373 42966425 -99305019 - LTR30 LTR ERV1 -670 52 1 440 236 0 0 chr9 42966425 42966514 -99304930 + LTR51 LTR ERV1 583 671 0 276 244 32 81 chr9 42967822 42967945 -99303499 + MIR SINE MIR 141 257 -5 432 285 111 43 chr9 42968182 42968389 -99303055 - MIR SINE MIR -35 227 7 325 304 32 14 chr9 42971178 42971322 -99300122 + MIR SINE MIR 2 157 -66 237 269 86 11 chr9 42971440 42971533 -99299911 + MIR3 SINE MIR 81 165 -43 2162 133 57 31 chr9 42971830 42972183 -99299261 + THE1B LTR MaLR 3 364 0 216 67 0 0 chr9 42972541 42972571 -99298873 + (TG)n Simple_repeat Simple_repeat 1 30 0 2516 53 0 3 chr9 42973176 42973478 -99297966 - AluY SINE Alu -10 301 1 243 229 98 35 chr9 42974216 42974348 -99297096 - L1ME LINE L1 -5901 169 30 2505 73 0 6 chr9 42974532 42974877 -99296567 + AluY SINE Alu 1 343 0 2030 208 50 15 chr9 42974897 42975217 -99296227 - L1MB5 LINE L1 -6 6168 5821 1892 154 0 13 chr9 42975217 42975550 -99295894 - AluSx SINE Alu 0 312 1 2030 208 50 15 chr9 42975550 42975695 -99295749 - L1MB5 LINE L1 -353 5821 5683 2020 152 0 3 chr9 42975800 42976109 -99295335 + AluSx SINE Alu 1 308 -4 554 288 71 4 chr9 42976646 42976872 -99294572 - MIR SINE MIR -10 252 12 24 0 0 0 chr9 42977424 42977448 -99293996 + AT_rich Low_complexity Low_complexity 1 24 0 327 288 124 13 chr9 42977744 42977897 -99293547 - MIR SINE MIR -36 226 57 182 219 0 0 chr9 42978112 42978144 -99293300 - L2 LINE L2 -86 3186 3155 1046 268 99 77 chr9 42978207 42978883 -99292561 - MER21B LTR ERV1 -149 714 24 3573 230 68 29 chr9 42979118 42979998 -99291446 - MER21B-int LTR ERV1 -42 4149 3147 2161 108 0 14 chr9 42979998 42980177 -99291267 - AluSp SINE Alu 0 312 137 2291 86 0 10 chr9 42980177 42980479 -99290965 - AluY SINE Alu -12 299 1 2161 108 0 14 chr9 42980479 42980615 -99290829 - AluSp SINE Alu -175 137 1 3573 230 68 29 chr9 42980615 42981222 -99290222 - MER21B-int LTR ERV1 -1044 3147 2565 636 283 36 43 chr9 42981230 42981303 -99290141 - MER21B-int LTR ERV1 -1907 2284 2212 1096 189 45 139 chr9 42981303 42981456 -99289988 + MLT1A1 LTR MaLR 1 167 -198 2104 103 24 3 chr9 42981456 42981747 -99289697 + AluY SINE Alu 6 302 -9 1096 189 45 139 chr9 42981747 42981996 -99289448 + MLT1A1 LTR MaLR 167 365 0 636 283 36 43 chr9 42981996 42982198 -99289246 - MER21B-int LTR ERV1 -1979 2212 2011 * 1592 256 41 62 chr9 42982192 42982808 -99288636 - MER4B-int LTR ERV1 -2294 4464 3862 1734 172 0 0 chr9 42982931 42983239 -99288205 + L1P5 LINE L1 4758 5065 -1081 2514 67 0 13 chr9 42983241 42983554 -99287890 + AluY SINE Alu 1 309 -2 828 173 0 0 chr9 42983555 42983694 -99287750 + L1P5 LINE L1 5597 5735 -421 887 259 5 0 chr9 42984754 42984939 -99286505 + MER5A DNA MER1_type 4 189 0 1313 129 39 28 chr9 42985411 42985666 -99285778 - L1MA8 LINE L1 -11 6280 6023 2361 100 0 13 chr9 42985666 42985976 -99285468 - AluY SINE Alu -5 306 1 1105 81 7 0 chr9 42985976 42986112 -99285332 - AluSp SINE Alu -176 137 1 1833 248 58 9 chr9 42986112 42986718 -99284726 - MER4B-int LTR ERV1 -953 3238 2565 612 286 36 43 chr9 42986726 42986799 -99284645 - MER4B-int LTR ERV1 -1907 2284 2212 1096 189 45 139 chr9 42986799 42986952 -99284492 + MLT1A1 LTR MaLR 1 167 -198 2112 103 24 3 chr9 42986952 42987243 -99284201 + AluY SINE Alu 6 302 -9 1096 189 45 139 chr9 42987243 42987492 -99283952 + MLT1A1 LTR MaLR 167 365 0 612 286 36 43 chr9 42987492 42987694 -99283750 - MER4B-int LTR ERV1 -1979 2212 2011 * 4056 239 51 84 chr9 42987688 42989121 -99282323 - MER4B-int LTR ERV1 -2294 4464 3079 2388 152 15 2 chr9 42989498 42989893 -99281551 + MER57A LTR ERV1 1 400 -3 2257 77 0 14 chr9 42990718 42991037 -99280407 + AluY SINE Alu 1 315 0 291 122 0 0 chr9 42991656 42991705 -99279739 + (GA)n Simple_repeat Simple_repeat 2 50 0 2377 97 0 13 chr9 42994022 42994332 -99277112 + AluY SINE Alu 1 306 -5 1358 122 39 28 chr9 42994332 42994587 -99276857 + L1MA8 LINE L1 6023 6280 -11 881 259 5 0 chr9 42995059 42995244 -99276200 - MER5A DNA MER1_type 0 189 4 800 180 0 0 chr9 42996304 42996443 -99275001 - L1P5 LINE L1 -421 5735 5597 2464 77 0 13 chr9 42996444 42996757 -99274687 - AluY SINE Alu -2 309 1 1597 197 0 3 chr9 42996759 42997068 -99274376 - L1P5 LINE L1 -1081 5065 4758 502 174 0 0 chr9 42997067 42997159 -99274285 + L1PA16 LINE L1 5736 5827 -339 * 436 257 21 14 chr9 42997163 42997303 -99274141 + AluYa5 SINE Alu 2 142 -169 232 296 82 0 chr9 42997609 42997707 -99273737 - MER5B DNA MER1_type 0 178 73 2060 127 3 0 chr9 42997723 42998015 -99273429 - AluSx SINE Alu -19 293 1 2211 100 4 0 chr9 42999989 43000310 -99271134 + AluY SINE Alu 1 322 0 2108 96 27 14 chr9 43001210 43001502 -99269942 - AluY SINE Alu -13 298 3 1638 83 0 0 chr9 43001514 43001718 -99269726 - AluY SINE Alu -107 204 1 2257 100 10 0 chr9 43002333 43002623 -99268821 + AluSp SINE Alu 1 293 -20 509 80 13 0 chr9 43002623 43002698 -99268746 + (GGAA)n Simple_repeat Simple_repeat 1 76 0 588 257 29 0 chr9 43002730 43002901 -99268543 + MER5B DNA MER1_type 3 178 0 746 203 62 82 chr9 43003946 43004343 -99267101 - MER4C LTR ERV1 0 699 149 2934 137 98 84 chr9 43004343 43004998 -99266446 - MER4A LTR ERV1 0 664 1 198 371 14 0 chr9 43005867 43005937 -99265507 + MIR SINE MIR 5 75 -187 356 351 70 18 chr9 43006975 43007203 -99264241 + MIR SINE MIR 17 256 -6 198 194 45 0 chr9 43007727 43007794 -99263650 + CT-rich Low_complexity Low_complexity 3 72 0 1505 181 14 3 chr9 43008618 43008900 -99262544 + MER49 LTR ERV1 1 285 -638 1199 246 39 21 chr9 43008967 43009297 -99262147 + MER4D LTR ERV1 568 903 0 2159 119 7 0 chr9 43009685 43009978 -99261466 - AluSc SINE Alu -14 295 1 1613 198 101 17 chr9 43010931 43011345 -99260099 + LTR48 LTR ERV1 294 742 -45 595 256 72 48 chr9 43012194 43012444 -99259000 - MIR SINE MIR -5 257 2 1351 242 87 3 chr9 43012494 43012874 -99258570 - L1M4 LINE L1 -903 5243 4832 4236 142 81 68 chr9 43012914 43012965 -99258479 - MER4D LTR ERV1 0 903 854 3643 107 14 4 chr9 43012965 43013471 -99257973 + MER9 LTR ERVK 1 511 0 4236 142 81 68 chr9 43013471 43013968 -99257476 - MER4D LTR ERV1 -49 854 337 2012 129 38 0 chr9 43013968 43014255 -99257189 - AluSx SINE Alu -14 298 1 4236 142 81 68 chr9 43014255 43014597 -99256847 - MER4D LTR ERV1 -566 337 1 31 0 0 0 chr9 43015370 43015401 -99256043 + AT_rich Low_complexity Low_complexity 1 31 0 695 204 52 12 chr9 43015489 43015661 -99255783 - MER96B DNA MER1_type? -238 179 1 2315 96 0 17 chr9 43015700 43016002 -99255442 + AluY SINE Alu 1 297 -14 225 0 0 0 chr9 43016176 43016201 -99255243 + (T)n Simple_repeat Simple_repeat 1 25 0 379 316 94 0 chr9 43016276 43016447 -99254997 - MIR SINE MIR -10 252 66 2011 132 0 46 chr9 43016617 43016755 -99254689 - AluSx SINE Alu -2 310 167 2644 98 125 5 chr9 43016755 43017155 -99254289 + LTR7 LTR ERV1 1 448 -2 2011 132 0 46 chr9 43017155 43017341 -99254103 - AluSx SINE Alu -145 167 1 654 267 174 15 chr9 43018487 43018884 -99252560 + L2 LINE L2 2380 2839 -475 212 267 0 17 chr9 43018986 43019046 -99252398 + (CATA)n Simple_repeat Simple_repeat 2 60 0 294 237 72 31 chr9 43019919 43020016 -99251428 + LTR48B LTR ERV1 1 101 -543 * 2231 194 38 7 chr9 43019984 43020428 -99251016 + MER39 LTR ERV1 250 707 0 1202 209 75 88 chr9 43020553 43020847 -99250597 + MER39 LTR ERV1 250 538 -169 2437 57 0 0 chr9 43020847 43021157 -99250287 - AluY SINE Alu 0 310 1 1202 209 75 88 chr9 43021157 43021325 -99250119 + MER39 LTR ERV1 538 707 0 228 67 0 0 chr9 43022492 43022522 -99248922 + (TCCA)n Simple_repeat Simple_repeat 4 33 0 503 15 0 15 chr9 43022706 43022771 -99248673 + (CA)n Simple_repeat Simple_repeat 2 65 0 1481 200 43 145 chr9 43022797 43023162 -99248282 - LTR38B LTR ERV1 0 591 347 2688 36 0 0 chr9 43023162 43023463 -99247981 - AluY SINE Alu -10 301 1 1481 200 43 145 chr9 43023463 43023778 -99247666 - LTR38B LTR ERV1 -244 347 1 206 216 20 39 chr9 43024067 43024118 -99247326 + L2 LINE L2 3250 3299 -14 2415 46 0 26 chr9 43024415 43024718 -99246726 - AluY SINE Alu -16 295 1 2959 234 40 76 chr9 43025156 43025825 -99245619 + MER21-int LTR ERV1 3172 3864 -327 2247 98 3 3 chr9 43025825 43026132 -99245312 + AluY SINE Alu 1 307 -4 2959 234 40 76 chr9 43026132 43026230 -99245214 + MER21-int LTR ERV1 3864 3964 -227 2188 204 40 73 chr9 43026230 43026807 -99244637 + MER74A LTR ERVL 1 558 0 2067 134 0 6 chr9 43026816 43027130 -99244314 + AluSx SINE Alu 1 312 0 2959 234 40 76 chr9 43027130 43027182 -99244262 + MER21-int LTR ERV1 3972 4024 -167 2585 118 75 5 chr9 43027182 43027598 -99243846 - LTR56 LTR ERV1 0 445 1 2959 234 40 76 chr9 43027598 43027710 -99243734 + MER21-int LTR ERV1 4024 4081 -110 366 269 69 63 chr9 43027892 43028067 -99243377 - MIR SINE MIR -41 221 46 2388 70 0 0 chr9 43028165 43028452 -99242992 - AluY SINE Alu -3 308 22 207 139 0 0 chr9 43028476 43028512 -99242932 + (TG)n Simple_repeat Simple_repeat 2 37 0 859 312 41 35 chr9 43028844 43029354 -99242090 + L1ME3A LINE L1 5454 5966 -204 1919 131 4 0 chr9 43029580 43029854 -99241590 + AluSg SINE Alu 1 275 -35 330 26 0 0 chr9 43029857 43029896 -99241548 + (TAAAA)n Simple_repeat Simple_repeat 2 40 0 2267 110 43 48 chr9 43030874 43031266 -99240178 - L1MA4A LINE L1 -1 6302 5913 2470 65 3 3 chr9 43032778 43033085 -99238359 + AluY SINE Alu 1 307 -4 540 178 0 19 chr9 43033304 43033411 -99238033 - MER53 DNA DNA -84 105 1 2478 77 0 3 chr9 43034141 43034453 -99236991 + AluY SINE Alu 1 311 0 227 340 46 56 chr9 43034541 43034738 -99236706 + L3 LINE CR1 1381 1575 -2 2448 86 3 3 chr9 43035301 43035614 -99235830 - AluSq SINE Alu 0 313 1 387 229 34 42 chr9 43035972 43036090 -99235354 - MER20 DNA MER1_type -4 215 99 2228 79 14 3 chr9 43036220 43036512 -99234932 + AluSc SINE Alu 1 295 -14 1973 185 117 76 chr9 43036889 43037387 -99234057 - MLT2B1 LTR ERVL 0 520 3 2838 16 0 0 chr9 43037550 43037857 -99233587 + AluYb8 SINE Alu 1 307 -11 1058 240 132 17 chr9 43038515 43038931 -99232513 - MLT1C LTR MaLR 0 467 4 1422 221 45 40 chr9 43039521 43039920 -99231524 - MLT1C LTR MaLR -8 459 59 410 207 76 83 chr9 43040692 43040837 -99230607 + MLT1H LTR MaLR 404 547 -2 266 191 19 76 chr9 43041545 43041650 -99229794 + LTR41 LTR ERVL 662 760 -13 772 180 64 0 chr9 43042174 43042346 -99229098 - L1MA7 LINE L1 -2 6289 6107 225 245 0 0 chr9 43042469 43042518 -99228926 + L2 LINE L2 3264 3312 -1 271 316 209 11 chr9 43042667 43042844 -99228600 - MIR SINE MIR 0 262 51 2098 107 24 0 chr9 43042859 43043150 -99228294 + AluSq SINE Alu 1 298 -15 430 282 43 19 chr9 43043737 43043946 -99227498 + L1ME4a LINE L1 5730 5943 -178 270 0 0 0 chr9 43044124 43044154 -99227290 + (CA)n Simple_repeat Simple_repeat 1 30 0 32 0 0 0 chr9 43045661 43045693 -99225751 + AT_rich Low_complexity Low_complexity 1 32 0 339 25 0 0 chr9 43045892 43045932 -99225512 + (TG)n Simple_repeat Simple_repeat 1 40 0 686 272 72 72 chr9 43045936 43046351 -99225093 - L2 LINE L2 -49 3264 2850 224 241 0 0 chr9 43047437 43047491 -99223953 + (TA)n Simple_repeat Simple_repeat 1 54 0 2092 90 0 48 chr9 43048028 43048338 -99223106 - AluSx SINE Alu -17 295 1 2517 49 3 0 chr9 43048613 43048917 -99222527 - AluY SINE Alu -6 305 1 2188 125 0 0 chr9 43049686 43049989 -99221455 + AluSq SINE Alu 1 303 -10 21 71 0 0 chr9 43049989 43050031 -99221413 + AT_rich Low_complexity Low_complexity 1 42 0 2417 176 58 0 chr9 43050503 43050930 -99220514 - MER70A LTR ERVL -20 452 1 2469 60 17 0 chr9 43051908 43052210 -99219234 - AluSp SINE Alu -6 307 1 2071 164 53 43 chr9 43052945 43053189 -99218255 + L1MDa LINE L1 1846 2086 -4454 2150 79 18 4 chr9 43053189 43053491 -99217953 - AluY SINE Alu 0 306 1 2071 164 53 43 chr9 43053491 43053831 -99217613 + L1MDa LINE L1 2086 2558 -3982 584 256 248 0 chr9 43054003 43054249 -99217195 + L1MD2 LINE L1 6043 6349 -10 329 304 66 33 chr9 43054293 43054474 -99216970 + L1MEc LINE L1 1630 1816 -4580 1534 207 21 24 chr9 43054507 43054889 -99216555 + L1MEc LINE L1 2521 2901 -3314 3993 162 18 34 chr9 43054952 43055740 -99215704 - LTR1 LTR ERV1 0 785 11 423 214 0 48 chr9 43055752 43055878 -99215566 + Charlie5 DNA MER1_type 2416 2535 -77 1950 216 54 14 chr9 43055879 43056473 -99214971 + L1MEc LINE L1 2896 3513 -2702 2221 151 31 28 chr9 43056518 43056622 -99214822 + L1M4c LINE L1 1 103 -6281 2156 100 3 7 chr9 43056622 43056922 -99214522 - AluY SINE Alu -12 299 1 2221 151 31 28 chr9 43056922 43057209 -99214235 + L1M4c LINE L1 103 393 -5991 255 152 22 0 chr9 43057195 43057241 -99214203 + L1MB4 LINE L1 5237 5283 -863 * 4069 187 19 56 chr9 43057277 43057308 -99214136 + L1MB4 LINE L1 5258 5289 -891 2165 146 128 13 chr9 43057308 43057692 -99213752 + MSTA LTR MaLR 1 428 0 4069 187 19 56 chr9 43057692 43058476 -99212968 + L1MB4 LINE L1 5289 6101 -79 2204 72 4 4 chr9 43058476 43058754 -99212690 + AluY SINE Alu 1 278 -33 342 0 0 0 chr9 43058759 43058797 -99212647 + (TA)n Simple_repeat Simple_repeat 2 39 0 4069 187 19 56 chr9 43058797 43058933 -99212511 + L1MB4 LINE L1 6105 6180 0 1162 206 23 68 chr9 43059108 43059418 -99212026 + MLT2B1 LTR ERVL 1 296 -118 27 29 0 0 chr9 43059488 43059522 -99211922 + AT_rich Low_complexity Low_complexity 1 34 0 468 296 106 12 chr9 43059640 43060296 -99211148 + L1MB7 LINE L1 2131 2928 -3218 3819 216 55 53 chr9 43060412 43060653 -99210791 + L1MB7 LINE L1 4146 4385 -1799 1809 91 95 0 chr9 43060653 43060905 -99210539 + L1PB3 LINE L1 5876 6151 -3 3819 216 55 53 chr9 43060905 43061072 -99210372 + L1MB7 LINE L1 4385 4550 -1634 207 0 0 0 chr9 43061072 43061095 -99210349 + (TTG)n Simple_repeat Simple_repeat 2 24 0 885 104 0 24 chr9 43061097 43061222 -99210222 - AluSp/q SINE Alu -18 295 174 3819 216 55 53 chr9 43061222 43062309 -99209135 + L1MB7 LINE L1 4550 5668 -516 2264 90 7 3 chr9 43062309 43062599 -99208845 + AluSg SINE Alu 1 291 -19 3819 216 55 53 chr9 43062599 43063117 -99208327 + L1MB7 LINE L1 5668 6184 0 572 259 24 0 chr9 43063281 43063447 -99207997 + L1M4 LINE L1 4222 4391 -1755 658 135 110 1 chr9 43063447 43063592 -99207852 + L1PB3 LINE L1 5876 6043 -125 2470 55 0 7 chr9 43063611 43063918 -99207526 - AluY SINE Alu -6 305 1 433 278 83 33 chr9 43064224 43064404 -99207040 + HAL1 LINE L1 8 196 -2311 1735 105 4 0 chr9 43064840 43065068 -99206376 - AluSc SINE Alu -14 295 67 291 281 48 68 chr9 43065070 43065216 -99206228 + LTR16C LTR ERVL 347 489 -2 296 309 27 37 chr9 43065269 43065457 -99205987 + HAL1 LINE L1 2031 2216 -291 3318 158 27 9 chr9 43065473 43066037 -99205407 + LTR69 LTR ERVL 8 581 -7 2287 117 0 0 chr9 43066288 43066729 -99204715 + AluSc SINE Alu 1 441 0 3524 172 5 4 chr9 43067096 43067649 -99203795 - MER41D LTR ERV1 -2 555 2 24 0 0 0 chr9 43067846 43067870 -99203574 + AT_rich Low_complexity Low_complexity 1 24 0 2083 110 37 3 chr9 43068263 43068384 -99203060 + AluSc SINE Alu 1 116 -193 234 0 0 0 chr9 43068384 43068410 -99203034 + (CA)n Simple_repeat Simple_repeat 2 27 0 2083 110 37 3 chr9 43068410 43068587 -99202857 + AluSc SINE Alu 116 309 0 205 261 0 0 chr9 43068671 43068717 -99202727 + L3 LINE CR1 1426 1471 -106 2421 60 3 13 chr9 43068741 43069042 -99202402 + AluY SINE Alu 1 298 -13 1003 281 115 17 chr9 43070052 43070469 -99200975 - MLT1E2 LTR MaLR -58 568 111 2639 55 0 0 chr9 43070797 43071108 -99200336 + AluY SINE Alu 1 311 0 2111 79 52 24 chr9 43071409 43071700 -99199744 + AluY SINE Alu 1 299 -12 749 255 85 88 chr9 43071728 43072009 -99199435 + MLT1I LTR MaLR 54 335 -74 2379 99 3 0 chr9 43072009 43072311 -99199133 - AluSg SINE Alu -7 303 1 749 255 85 88 chr9 43072311 43072382 -99199062 + MLT1I LTR MaLR 335 405 -4 1831 188 65 31 chr9 43072699 43073114 -99198330 + MLT2B1 LTR ERVL 1 429 -91 3168 182 3 46 chr9 43073201 43073797 -99197647 + ERVL LTR ERVL 4814 5383 -381 2501 68 0 7 chr9 43073797 43074107 -99197337 - AluY SINE Alu -3 308 1 3168 182 3 46 chr9 43074107 43074142 -99197302 + ERVL LTR ERVL 5383 5418 -346 327 85 0 0 chr9 43074146 43074193 -99197251 + (TG)n Simple_repeat Simple_repeat 2 48 0 311 342 83 22 chr9 43074348 43074576 -99196868 - L2 LINE L2 -2919 395 154 244 308 131 0 chr9 43075549 43075679 -99195765 + MIR3 SINE MIR 56 202 -6 724 150 176 13 chr9 43076574 43076727 -99194717 + L1M3e LINE L1 466 643 -6846 753 272 15 75 chr9 43076759 43077171 -99194273 + L1M3e LINE L1 1173 1559 -5930 2172 262 82 19 chr9 43077177 43077968 -99193476 + L1M3e LINE L1 2565 3405 -4160 1620 83 0 0 chr9 43078238 43078442 -99193002 + AluY SINE Alu 1 204 -107 2090 96 27 14 chr9 43078454 43078746 -99192698 + AluY SINE Alu 3 298 -13 2152 104 4 0 chr9 43079645 43079970 -99191474 - AluY SINE Alu 0 326 1 446 261 183 7 chr9 43081574 43081727 -99189717 - MER5A DNA MER1_type 0 189 10 403 313 62 91 chr9 43081833 43082039 -99189405 + L2 LINE L2 2323 2513 -801 2509 72 0 0 chr9 43082039 43082343 -99189101 + AluSg SINE Alu 1 304 -6 403 313 62 91 chr9 43082343 43082552 -99188892 + L2 LINE L2 2513 2726 -588 205 223 154 69 chr9 43083082 43083212 -99188232 - MIR3 SINE MIR -57 151 11 2299 90 0 22 chr9 43083573 43083884 -99187560 - AluY SINE Alu -7 304 1 1703 238 110 42 chr9 43084241 43084765 -99186679 - LTR48B LTR ERV1 -2 642 70 2561 66 0 0 chr9 43084765 43085069 -99186375 + AluY SINE Alu 1 304 -7 1703 238 110 42 chr9 43085069 43085145 -99186299 - LTR48B LTR ERV1 -574 70 1 234 300 40 40 chr9 43085175 43085325 -99186119 + MLT1K LTR MaLR 426 575 -13 1459 268 78 44 chr9 43085399 43086063 -99185381 - L1MCa LINE L1 -4965 1461 775 840 83 8 8 chr9 43086068 43086189 -99185255 + Alu SINE Alu 174 294 -16 186 43 0 0 chr9 43086234 43086257 -99185187 + (T)n Simple_repeat Simple_repeat 1 23 0 2229 78 0 3 chr9 43086441 43086751 -99184693 - AluY SINE Alu 0 309 1 2835 19 3 0 chr9 43087057 43087374 -99184070 - AluYb8 SINE Alu 0 318 1 6405 164 15 9 chr9 43087397 43088124 -99183320 - L1MC1 LINE L1 -6 6327 5606 2531 46 0 7 chr9 43088124 43088427 -99183017 - AluY SINE Alu -10 301 1 6405 164 15 9 chr9 43088427 43088848 -99182596 - L1MC1 LINE L1 -727 5606 5163 2086 132 3 0 chr9 43088848 43089144 -99182300 - AluSx SINE Alu -15 297 1 6405 164 15 9 chr9 43089144 43089192 -99182252 - L1MC1 LINE L1 -1170 5163 5117 1112 156 0 0 chr9 43089195 43089375 -99182069 - L1MC/D LINE L1 -539 5794 5615 784 276 13 0 chr9 43089370 43089602 -99181842 - L1MC1 LINE L1 -1049 5097 4863 * 392 290 83 7 chr9 43090001 43090146 -99181298 + MIR3 SINE MIR 29 184 -24 2104 98 14 0 chr9 43090500 43090801 -99180643 - AluSx SINE Alu 0 305 1 40 21 0 0 chr9 43091131 43091178 -99180266 + AT_rich Low_complexity Low_complexity 1 47 0 1885 69 0 4 chr9 43092962 43093194 -99178250 - L1PA8 LINE L1 -2 6170 5940 878 172 0 0 chr9 43093374 43093496 -99177948 - FLAM_C SINE Alu -9 124 3 1714 178 7 23 chr9 43093823 43094132 -99177312 - AluJb SINE Alu -6 306 3 1589 226 117 40 chr9 43094466 43094583 -99176861 - LTR40b LTR ERVL 0 462 355 201 26 79 0 chr9 43094583 43094621 -99176823 + (TTA)n Simple_repeat Simple_repeat 2 42 0 2262 98 0 0 chr9 43094628 43094915 -99176529 - AluY SINE Alu -24 287 1 1589 226 117 40 chr9 43094915 43095218 -99176226 - LTR40b LTR ERVL -112 350 1 448 241 29 51 chr9 43095382 43095519 -99175925 + MER5B DNA MER1_type 44 177 -1 5861 114 5 2 chr9 43095965 43097119 -99174325 - L1PA13 LINE L1 0 6814 5647 11739 201 33 13 chr9 43097120 43100390 -99171054 - L1PA13 LINE L1 -2180 4617 1275 183 80 0 0 chr9 43100390 43100415 -99171029 + (CAG)n Simple_repeat Simple_repeat 1 25 0 11739 201 33 13 chr9 43100415 43100521 -99170923 - L1PA13 LINE L1 -5522 1275 1173 248 65 0 0 chr9 43100538 43100569 -99170875 + (T)n Simple_repeat Simple_repeat 1 31 0 5750 159 8 8 chr9 43100671 43101647 -99169797 + L1PA13 LINE L1 3389 4364 -1782 4142 123 16 6 chr9 43101647 43102271 -99169173 + L1PA13 LINE L1 5525 6156 -7 2510 53 3 13 chr9 43102271 43102575 -99168869 + AluY SINE Alu 1 301 -10 22 35 0 0 chr9 43103767 43103796 -99167648 + AT_rich Low_complexity Low_complexity 1 29 0 1494 128 5 0 chr9 43105399 43105617 -99165827 + AluSg/x SINE Alu 87 305 -5 1575 193 6 39 chr9 43105627 43105922 -99165522 + L1PB4 LINE L1 5831 6115 -41 2950 6 0 0 chr9 43105922 43106238 -99165206 + AluYb8 SINE Alu 1 316 -2 1575 193 6 39 chr9 43106238 43106279 -99165165 + L1PB4 LINE L1 6115 6156 0 1819 201 74 39 chr9 43107204 43107692 -99163752 + MLT1D LTR MaLR 1 505 0 297 0 0 0 chr9 43108484 43108517 -99162927 + (TG)n Simple_repeat Simple_repeat 1 33 0 357 322 8 17 chr9 43108572 43108690 -99162754 + L2 LINE L2 2906 3022 -291 1907 204 104 7 chr9 43108725 43108756 -99162688 - MLT2B2 LTR ERVL -11 504 477 309 51 0 0 chr9 43108756 43108795 -99162649 + (TG)n Simple_repeat Simple_repeat 2 40 0 1907 204 104 7 chr9 43108795 43109213 -99162231 - MLT2B2 LTR ERVL -38 477 11 455 281 48 0 chr9 43109229 43109375 -99162069 + L2 LINE L2 3161 3313 0 328 50 0 0 chr9 43109378 43109418 -99162026 - L1P LINE L1 -4370 1776 1737 3461 21 0 0 chr9 43109419 43109795 -99161649 + L1PA2 LINE L1 5780 6155 0 2466 81 0 0 chr9 43109823 43110131 -99161313 - AluY SINE Alu -3 308 1 2954 233 40 76 chr9 43110569 43111238 -99160206 + MER31A-int LTR ERV1 3172 3864 -327 2256 97 3 3 chr9 43111238 43111546 -99159898 + AluY SINE Alu 1 308 -3 2954 233 40 76 chr9 43111546 43111644 -99159800 + MER31A-int LTR ERV1 3864 3964 -227 2206 203 40 73 chr9 43111644 43112221 -99159223 + MER74A LTR ERVL 1 558 0 2079 134 0 6 chr9 43112230 43112544 -99158900 + AluSx SINE Alu 1 312 0 2954 233 40 76 chr9 43112544 43112596 -99158848 + MER31A-int LTR ERV1 3972 4024 -167 2596 118 75 5 chr9 43112596 43113012 -99158432 - LTR56 LTR ERV1 0 445 1 2954 233 40 76 chr9 43113012 43113124 -99158320 + MER31A-int LTR ERV1 4024 4081 -110 379 269 84 18 chr9 43113292 43113459 -99157985 - MIR SINE MIR -24 238 61 2342 77 0 0 chr9 43113580 43113865 -99157579 - AluY SINE Alu -5 306 22 207 139 0 0 chr9 43113889 43113925 -99157519 + (TG)n Simple_repeat Simple_repeat 2 37 0 845 314 41 35 chr9 43114205 43114715 -99156729 + L1ME3A LINE L1 5454 5966 -204 1821 146 4 0 chr9 43114941 43115215 -99156229 + AluSg SINE Alu 1 275 -35 375 23 0 0 chr9 43115218 43115262 -99156182 + (TAAAA)n Simple_repeat Simple_repeat 2 45 0 2280 110 43 48 chr9 43116240 43116632 -99154812 - L1MA4A LINE L1 -1 6302 5913 2255 107 0 13 chr9 43117096 43117404 -99154040 - AluSc SINE Alu -5 304 1 2442 130 42 12 chr9 43118154 43118561 -99152883 - MSTB1 LTR MaLR 0 432 14 923 327 118 5 chr9 43118765 43119374 -99152070 - L2 LINE L2 -528 2786 2109 2243 171 28 21 chr9 43120449 43120922 -99150522 + MER31A LTR ERV1 1 476 -9 195 263 12 100 chr9 43121003 43121083 -99150361 - L2 LINE L2 0 3313 3241 606 152 0 0 chr9 43121737 43121829 -99149615 + MER20 DNA MER1_type 1 92 -127 2214 105 0 7 chr9 43123301 43123595 -99147849 + AluY SINE Alu 1 292 -19 23 0 0 0 chr9 43123595 43123618 -99147826 + AT_rich Low_complexity Low_complexity 1 23 0 2115 129 0 23 chr9 43123754 43124064 -99147380 - AluSx SINE Alu -9 303 1 5844 63 1 12 chr9 43124116 43124834 -99146610 + L1PA8 LINE L1 5461 6170 -2 2228 99 0 0 chr9 43124859 43125141 -99146303 - AluSc SINE Alu -23 286 5 2358 91 0 0 chr9 43125158 43125454 -99145990 - AluSx SINE Alu -11 301 6 1122 185 83 29 chr9 43125591 43125867 -99145577 - L1M4 LINE L1 -917 5229 4939 588 165 31 17 chr9 43125861 43126007 -99145437 + L1M4 LINE L1 5227 5380 -766 * 1195 58 0 0 chr9 43126007 43126191 -99145253 + AluY SINE Alu 135 283 -28 4165 186 11 37 chr9 43126208 43126449 -99144995 + L1MA10 LINE L1 5364 5610 -724 2532 36 0 13 chr9 43126449 43126751 -99144693 + AluY SINE Alu 1 298 -13 4165 186 11 37 chr9 43126751 43126941 -99144503 + L1MA10 LINE L1 5610 5803 -531 3999 87 5 69 chr9 43126941 43127582 -99143862 + MER4A LTR ERV1 1 600 0 4165 186 11 37 chr9 43127582 43128105 -99143339 + L1MA10 LINE L1 5803 6295 -39 2212 114 3 13 chr9 43129114 43129429 -99142015 - AluSx SINE Alu 0 312 1 346 224 12 0 chr9 43130273 43130358 -99141086 + MER96 DNA MER1_type? 1 86 -89 1876 58 12 0 chr9 43130889 43131130 -99140314 + L1PA5 LINE L1 5909 6152 -2 213 380 92 6 chr9 43131768 43131931 -99139513 - MIR3 SINE MIR -2 206 30 2075 115 28 3 chr9 43133872 43134193 -99137251 - L1PA16 LINE L1 -10 6156 5828 2289 92 3 10 chr9 43134193 43134497 -99136947 - AluY SINE Alu -9 302 1 640 235 135 23 chr9 43135250 43135719 -99135725 - MER34B LTR ERV1 -1 564 1 198 402 56 9 chr9 43135831 43135938 -99135506 - MER5B DNA MER1_type -12 166 55 2414 61 0 0 chr9 43136106 43136402 -99135042 + AluY SINE Alu 1 296 -15 1455 144 116 49 chr9 43136845 43137130 -99134314 + AluJo SINE Alu 1 304 -8 28 0 0 0 chr9 43139147 43139175 -99132269 + AT_rich Low_complexity Low_complexity 1 28 0 3916 96 24 21 chr9 43140339 43140957 -99130487 - L1MA1 LINE L1 0 6302 5683 267 287 74 33 chr9 43141807 43141988 -99129456 - MIR SINE MIR -49 213 27 198 191 0 0 chr9 43142123 43142165 -99129279 + (TA)n Simple_repeat Simple_repeat 1 42 0 1146 219 78 39 chr9 43142188 43142626 -99128818 + L1ME2 LINE L1 39 493 -5903 411 224 54 80 chr9 43142634 43142713 -99128731 - MER106B DNA MER1_type -5 1054 974 2043 103 0 34 chr9 43142713 43143040 -99128404 - AluY SINE Alu 0 317 1 411 224 54 80 chr9 43143040 43143205 -99128239 - MER106B DNA MER1_type -85 974 1 1051 245 68 43 chr9 43143206 43143462 -99127982 + L1ME2 LINE L1 514 787 -5609 2109 84 14 3 chr9 43143462 43143749 -99127695 + AluY SINE Alu 1 290 -21 1051 245 68 43 chr9 43143749 43143933 -99127511 + L1ME2 LINE L1 787 965 -5431 1866 249 66 72 chr9 43143948 43145165 -99126279 + L1ME2 LINE L1 1012 2220 -4176 2664 217 62 31 chr9 43145172 43146160 -99125284 + L1ME2 LINE L1 5196 6224 -9 264 79 0 0 chr9 43147216 43147254 -99124190 - L1M4b LINE L1 -6732 127 90 578 124 48 76 chr9 43147741 43147886 -99123558 - L1P LINE L1 -746 5410 5270 3474 119 33 3 chr9 43147886 43148464 -99122980 + L1PB4 LINE L1 5384 5978 -178 2298 48 0 55 chr9 43148481 43148793 -99122651 + AluY SINE Alu 1 295 -16 2421 69 0 19 chr9 43148910 43149227 -99122217 + AluY SINE Alu 1 311 0 646 262 24 0 chr9 43149800 43149964 -99121480 - MER5A DNA MER1_type -5 184 17 586 259 134 0 chr9 43149979 43150180 -99121264 + MIR SINE MIR 22 249 -13 185 196 103 112 chr9 43150230 43150337 -99121107 - L3 LINE CR1 -3 1574 1469 621 225 59 5 chr9 43151409 43151596 -99119848 + L1 LINE L1 4538 4734 -1412 233 209 0 0 chr9 43152409 43152452 -99118992 + CT-rich Low_complexity Low_complexity 3 45 0 2472 67 0 0 chr9 43152929 43153229 -99118215 + AluY SINE Alu 1 300 -11 2722 91 6 3 chr9 43153408 43153771 -99117673 + THE1B LTR MaLR 1 364 0 2412 61 7 0 chr9 43155045 43155340 -99116104 - AluY SINE Alu -14 297 1 2116 69 45 21 chr9 43155864 43156154 -99115290 - AluY SINE Alu -14 297 1 15670 211 28 11 chr9 43156716 43158972 -99112472 + L1PA15 LINE L1 1319 3536 -3280 1967 66 92 4 chr9 43158972 43159243 -99112201 - AluY SINE Alu -16 295 1 15670 211 28 11 chr9 43159243 43162403 -99109041 + L1PA15 LINE L1 3536 6816 0 239 106 43 0 chr9 43162737 43162784 -99108660 + A-rich Low_complexity Low_complexity 2 50 0 934 227 33 94 chr9 43164637 43164990 -99106454 + MLT1A2 LTR MaLR 1 329 -45 2412 70 0 16 chr9 43164990 43165302 -99106142 - AluY SINE Alu -4 307 1 934 227 33 94 chr9 43165302 43165340 -99106104 + MLT1A2 LTR MaLR 329 368 -6 2446 63 0 0 chr9 43166915 43167202 -99104242 - AluY SINE Alu -24 287 1 836 259 8 59 chr9 43167292 43167387 -99104057 + MIR SINE MIR 2 100 -162 2821 144 25 16 chr9 43167387 43167872 -99103572 + LTR45B LTR ERV1 1 489 0 836 259 8 59 chr9 43167872 43168012 -99103432 + MIR SINE MIR 100 225 -37 23 33 0 0 chr9 43168398 43168428 -99103016 + AT_rich Low_complexity Low_complexity 1 30 0 2327 68 0 0 chr9 43168589 43168900 -99102544 + AluY SINE Alu 1 311 0 582 296 17 6 chr9 43169860 43170039 -99101405 + MLT1J LTR MaLR 10 190 -321 12662 188 16 10 chr9 43170048 43172638 -99098806 + L1PA13 LINE L1 1 2621 -4176 5892 190 14 23 chr9 43172836 43173982 -99097462 - L1PA13 LINE L1 -5650 1137 2 4084 191 77 13 chr9 43174174 43175299 -99096145 + L1MC2 LINE L1 4443 5707 -637 2298 99 0 0 chr9 43175299 43175591 -99095853 - AluSc SINE Alu -17 292 1 4084 191 77 13 chr9 43175591 43176157 -99095287 + L1MC2 LINE L1 5707 6235 -109 1375 160 31 12 chr9 43177479 43178083 -99093361 + MER39 LTR ERV1 1 707 0 280 331 153 0 chr9 43178122 43178285 -99093159 - MIR3 SINE MIR -3 205 18 2258 75 16 20 chr9 43179492 43179820 -99091624 - AluY SINE Alu 0 327 1 2384 91 0 0 chr9 43180519 43180828 -99090616 - AluY SINE Alu -2 309 1 2297 80 7 7 chr9 43181643 43181932 -99089512 - AluSg SINE Alu -21 289 1 2677 101 13 0 chr9 43181938 43182334 -99089110 - L1PA13 LINE L1 -3 6160 5760 23 0 0 0 chr9 43182339 43182362 -99089082 + AT_rich Low_complexity Low_complexity 1 23 0 405 301 109 93 chr9 43182612 43182877 -99088567 + L2 LINE L2 2340 2599 -673 2135 135 125 16 chr9 43182877 43183262 -99088182 - MSTA LTR MaLR -1 427 1 405 301 109 93 chr9 43183262 43183921 -99087523 + L2 LINE L2 2599 3263 -9 212 357 135 16 chr9 43183904 43184156 -99087288 - L2 LINE L2 -12 3301 3020 * 360 213 0 38 chr9 43184198 43184278 -99087166 - MER63 DNA MER1_type -329 733 31 186 293 17 0 chr9 43184331 43184389 -99087055 - L2 LINE L2 -955 2359 2301 403 281 0 12 chr9 43184490 43184508 -99086936 - L1MA10 LINE L1 -1 6333 6316 972 252 51 55 chr9 43184508 43184808 -99086636 - L1ME1 LINE L1 -10 6156 5856 2197 85 3 7 chr9 43184808 43185125 -99086319 - AluY SINE Alu 0 316 1 972 252 51 55 chr9 43185125 43185311 -99086133 - L1ME1 LINE L1 -310 5856 5671 289 211 14 0 chr9 43185311 43185382 -99086062 + MER74B LTR ERVL 50 121 -501 1615 167 0 16 chr9 43186486 43186743 -99084701 - AluJo SINE Alu -59 253 1 2530 53 0 0 chr9 43186752 43187055 -99084389 - AluY SINE Alu -8 303 1 22 35 0 0 chr9 43187916 43187945 -99083499 + AT_rich Low_complexity Low_complexity 1 29 0 2553 228 249 10 chr9 43188234 43190244 -99081200 + L1MA9 LINE L1 1 2508 -4529 * 4468 187 139 11 chr9 43190233 43190698 -99080746 + L1MA9 LINE L1 5008 5412 -1715 2277 88 3 16 chr9 43190698 43191003 -99080441 + AluSp SINE Alu 1 301 -12 4468 187 139 11 chr9 43191003 43191747 -99079697 + L1MA9 LINE L1 5412 6373 -754 4184 149 29 59 chr9 43191765 43192553 -99078891 + L1MA9 LINE L1 6355 7166 -106 254 29 29 0 chr9 43192553 43192588 -99078856 + (CA)n Simple_repeat Simple_repeat 1 36 0 4184 149 29 59 chr9 43192588 43192683 -99078761 + L1MA9 LINE L1 7166 7212 -60 2223 106 10 0 chr9 43192683 43192986 -99078458 - AluSq SINE Alu -7 306 1 4184 149 29 59 chr9 43192986 43193012 -99078432 + L1MA9 LINE L1 7212 7237 -35 388 274 29 73 chr9 43193102 43193189 -99078255 + L2 LINE L2 3119 3208 -105 2146 124 0 7 chr9 43193189 43193487 -99077957 - AluSq SINE Alu -17 296 1 388 274 29 73 chr9 43193487 43193603 -99077841 + L2 LINE L2 3208 3313 0 210 385 19 10 chr9 43193873 43193977 -99077467 + MIR3 SINE MIR 94 198 -10 2632 200 107 11 chr9 43194336 43195124 -99076320 - L1MC2 LINE L1 -344 6000 5141 766 188 0 7 chr9 43195201 43195345 -99076099 + FRAM SINE Alu 22 164 -12 3139 252 42 33 chr9 43195345 43196587 -99074857 - L1MC2 LINE L1 -1076 5070 3818 1366 201 118 97 chr9 43196674 43197387 -99074057 - LTR1B LTR ERV1 -81 745 18 338 260 5 2 chr9 43197539 43197623 -99073821 - L1MC2 LINE L1 -2318 3828 3741 703 180 31 12 chr9 43197623 43197784 -99073660 - L1MA9 LINE L1 0 6312 6149 338 260 5 2 chr9 43197784 43197799 -99073645 - L1MC2 LINE L1 -2405 3741 3728 516 168 0 9 chr9 43197833 43197946 -99073498 - L1MA7 LINE L1 -2 6289 6178 1747 170 57 24 chr9 43197948 43198331 -99073113 - MER31A LTR ERV1 -89 396 1 23 0 0 0 chr9 43198817 43198840 -99072604 + AT_rich Low_complexity Low_complexity 1 23 0 2087 101 17 0 chr9 43199149 43199436 -99072008 - AluSc SINE Alu -17 292 1 1314 165 0 9 chr9 43199502 43199720 -99071724 - MER20 DNA MER1_type 0 219 4 2440 52 13 3 chr9 43199973 43200279 -99071165 - AluY SINE Alu -1 310 2 2543 62 0 7 chr9 43200469 43200775 -99070669 - AluY SINE Alu -7 304 1 306 0 0 0 chr9 43200944 43200978 -99070466 + (TGAA)n Simple_repeat Simple_repeat 2 35 0 2305 79 3 0 chr9 43201359 43201649 -99069795 + AluY SINE Alu 1 291 -20 432 0 0 0 chr9 43201651 43201699 -99069745 + (TA)n Simple_repeat Simple_repeat 1 48 0 2545 149 29 2 chr9 43201893 43201931 -99069513 - MSTA LTR MaLR 0 428 392 1841 143 7 18 chr9 43201931 43202262 -99069182 - AluSx SINE Alu 0 312 1 2545 149 29 2 chr9 43202262 43202640 -99068804 - MSTA LTR MaLR -36 392 1 2416 86 16 0 chr9 43203161 43203464 -99067980 - AluSc SINE Alu -1 308 1 934 240 45 75 chr9 43203831 43204165 -99067279 + MER110 LTR ERV1 8 288 -203 2358 85 7 0 chr9 43204165 43204459 -99066985 - AluY SINE Alu -15 296 1 934 240 45 75 chr9 43204459 43204559 -99066885 + MER110 LTR ERV1 288 390 -101 1223 133 0 0 chr9 43204607 43204780 -99066664 + AluSg/x SINE Alu 130 302 -8 258 176 20 0 chr9 43204780 43204831 -99066613 + THE1C LTR MaLR 324 375 0 2370 81 0 0 chr9 43206695 43206993 -99064451 - AluSp SINE Alu -15 298 1 429 262 11 22 chr9 43207163 43207346 -99064098 + LTR37B LTR ERV1 231 411 -57 2361 96 0 0 chr9 43207702 43208004 -99063440 + AluSx SINE Alu 1 302 -10 330 26 0 0 chr9 43208850 43208889 -99062555 + (TG)n Simple_repeat Simple_repeat 2 40 0 254 289 119 19 chr9 43209052 43209211 -99062233 - MIR SINE MIR -18 244 70 2344 106 0 0 chr9 43209231 43209533 -99061911 + AluSx SINE Alu 1 302 -10 501 341 65 9 chr9 43210149 43210378 -99061066 - MIR SINE MIR -19 243 2 35 54 0 0 chr9 43210386 43210442 -99061002 + AT_rich Low_complexity Low_complexity 1 56 0 26 82 0 0 chr9 43210465 43210526 -99060918 + AT_rich Low_complexity Low_complexity 1 61 0 2328 66 0 23 chr9 43210779 43211082 -99060362 - AluY SINE Alu -15 296 1 313 296 119 87 chr9 43211121 43211259 -99060185 - L1MEd LINE L1 -2231 3898 3766 1468 181 41 24 chr9 43211259 43211597 -99059847 - L1MC2 LINE L1 -11 6333 5990 313 296 119 87 chr9 43211597 43211735 -99059709 - L1MEd LINE L1 -2363 3766 3613 1590 139 174 47 chr9 43211872 43212210 -99059234 + MSTA LTR MaLR 1 394 -34 2536 43 0 13 chr9 43212210 43212512 -99058932 - AluY SINE Alu -13 298 1 1590 139 174 47 chr9 43212512 43212553 -99058891 + MSTA LTR MaLR 394 428 0 464 292 25 61 chr9 43212732 43213009 -99058435 - L1MEd LINE L1 -3395 2734 2468 1386 208 0 63 chr9 43213415 43213732 -99057712 + AluJo SINE Alu 1 297 -15 1972 125 0 7 chr9 43213732 43214017 -99057427 + AluSx SINE Alu 27 311 -1 309 283 41 21 chr9 43214017 43214162 -99057282 + MER41B LTR ERV1 283 430 -205 480 309 98 48 chr9 43214424 43215003 -99056441 - L1MEd LINE L1 -5172 947 311 2247 84 37 7 chr9 43215003 43215301 -99056143 + AluY SINE Alu 2 308 -3 480 309 98 48 chr9 43215301 43215571 -99055873 - L1MEd LINE L1 -5808 311 56 1968 79 8 11 chr9 43215811 43216105 -99055339 - AluY SINE Alu 0 309 17 277 189 16 0 chr9 43216151 43216229 -99055215 - L1MB5 LINE L1 -42 6132 6050 285 89 22 0 chr9 43216540 43216585 -99054859 + Alu SINE Alu 237 282 -19 2378 64 20 7 chr9 43217127 43217425 -99054019 - AluY SINE Alu -9 302 1 1227 30 0 0 chr9 43217426 43217560 -99053884 - AluY SINE Alu -177 134 1 1701 236 106 37 chr9 43217561 43218240 -99053204 - L1MCa LINE L1 -5699 727 2 2506 60 0 0 chr9 43219249 43219549 -99051895 + AluY SINE Alu 1 300 -11 1720 209 82 19 chr9 43219552 43220249 -99051195 - L1MCb LINE L1 -4851 1194 634 29 28 0 0 chr9 43220249 43220285 -99051159 + AT_rich Low_complexity Low_complexity 1 36 0 2041 141 10 0 chr9 43220614 43220919 -99050525 + AluSx SINE Alu 1 308 -4 2099 110 0 32 chr9 43221515 43221823 -99049621 + AluY SINE Alu 1 298 -13 1521 211 64 44 chr9 43223139 43223595 -99047849 - LTR40c LTR ERVL 0 465 1 238 329 14 0 chr9 43223695 43223768 -99047676 + MIR3 SINE MIR 126 199 -9 680 194 0 61 chr9 43223852 43224017 -99047427 + MER3 DNA MER1_type 5 159 -50 2323 77 0 62 chr9 43224020 43224343 -99047101 - AluY SINE Alu -8 303 1 1194 262 122 17 chr9 43224701 43225224 -99046220 - LTR48B LTR ERV1 -2 642 65 2534 63 0 0 chr9 43225225 43225526 -99045918 + AluY SINE Alu 1 301 -10 562 159 38 8 chr9 43225686 43225818 -99045626 + LTR37B LTR ERV1 333 468 0 415 324 112 22 chr9 43225895 43226352 -99045092 - L1M4 LINE L1 -991 5155 4658 598 231 100 6 chr9 43226531 43226691 -99044753 + MER5B DNA MER1_type 2 176 -2 2079 137 16 0 chr9 43228578 43228885 -99042559 + AluSx SINE Alu 1 312 0 2175 98 14 0 chr9 43228888 43229175 -99042269 + AluY SINE Alu 20 310 -1 2314 104 0 0 chr9 43229177 43229484 -99041960 + AluSq SINE Alu 1 307 -6 436 224 68 41 chr9 43230033 43230180 -99041264 - MER58A DNA MER1_type -29 195 45 328 333 0 0 chr9 43231631 43231733 -99039711 - MER94 DNA DNA -32 102 1 1893 155 111 17 chr9 43232625 43232947 -99038497 + MLT2D LTR ERVL 17 378 -36 369 75 0 0 chr9 43232947 43233000 -99038444 + (CA)n Simple_repeat Simple_repeat 2 54 0 1893 155 111 17 chr9 43233000 43233039 -99038405 + MLT2D LTR ERVL 378 412 -2 21 36 0 0 chr9 43233239 43233267 -99038177 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr9 43233351 43233374 -99038070 + AT_rich Low_complexity Low_complexity 1 23 0 1284 180 141 0 chr9 43234586 43234841 -99036603 + AluJb SINE Alu 1 291 -11 2488 43 20 7 chr9 43235352 43235651 -99035793 - AluY SINE Alu -8 303 1 23 54 0 0 chr9 43237612 43237649 -99033795 + AT_rich Low_complexity Low_complexity 1 37 0 21 89 0 0 chr9 43237786 43237842 -99033602 + AT_rich Low_complexity Low_complexity 1 56 0 2431 76 0 0 chr9 43238639 43238943 -99032501 - AluY SINE Alu -7 304 1 3626 198 19 69 chr9 43240163 43241089 -99030355 - L1MB8 LINE L1 0 6414 5537 2429 85 0 0 chr9 43241089 43241395 -99030049 - AluY SINE Alu -4 307 2 3626 198 19 69 chr9 43241395 43241500 -99029944 - L1MB8 LINE L1 -877 5537 5428 8135 237 52 35 chr9 43241501 43244515 -99026929 - L1MB8 LINE L1 -1088 5294 2226 5580 213 49 19 chr9 43244523 43246869 -99024575 - L1MB4 LINE L1 -7 6173 3767 234 226 69 39 chr9 43246887 43246989 -99024455 - L1MDa LINE L1 -4178 2779 2675 21 0 0 0 chr9 43247041 43247062 -99024382 + AT_rich Low_complexity Low_complexity 1 21 0 1336 290 60 13 chr9 43247374 43247568 -99023876 - L1MDa LINE L1 -4543 2416 2232 1332 114 13 13 chr9 43247568 43247796 -99023648 - L1MA4 LINE L1 -1 6299 6072 1336 290 60 13 chr9 43247796 43248288 -99023156 - L1MDa LINE L1 -4727 2232 1698 * 3129 268 73 7 chr9 43248272 43249120 -99022324 - L1MDa LINE L1 -5946 913 10 21 0 0 0 chr9 43250065 43250086 -99021358 + AT_rich Low_complexity Low_complexity 1 21 0 2115 96 65 0 chr9 43250121 43250412 -99021032 - AluSg SINE Alu 0 310 1 332 191 2 132 chr9 43250612 43250743 -99020701 + AluJo SINE Alu 51 137 -165 336 344 37 6 chr9 43252015 43252178 -99019266 - MER5A DNA MER1_type -6 183 16 358 337 37 6 chr9 43253562 43253725 -99017719 - MER5A DNA MER1_type -6 183 16 205 253 0 0 chr9 43254623 43254676 -99016768 + MIR SINE MIR 99 140 -68 2084 115 0 13 chr9 43254708 43255020 -99016424 + AluSc SINE Alu 2 309 0 1884 155 0 20 chr9 43256010 43256313 -99015131 + AluSx SINE Alu 1 297 -15 727 268 163 0 chr9 43256905 43257151 -99014293 - L2 LINE L2 -763 2551 2266 453 36 0 0 chr9 43257177 43257232 -99014212 + (CA)n Simple_repeat Simple_repeat 1 55 0 3218 230 74 46 chr9 43257292 43257856 -99013588 - L1MC4 LINE L1 -364 7678 7131 2269 85 0 0 chr9 43257856 43258163 -99013281 + AluY SINE Alu 1 307 0 3218 230 74 46 chr9 43258163 43258784 -99012660 - L1MC4 LINE L1 -911 7131 6459 1397 187 23 4 chr9 43259002 43259259 -99012185 - AluJo SINE Alu -13 299 38 413 239 17 17 chr9 43259949 43260125 -99011319 + GA-rich Low_complexity Low_complexity 4 179 0 1359 224 13 31 chr9 43260668 43260985 -99010459 - LTR40b LTR ERVL 0 462 152 230 302 42 31 chr9 43261197 43261293 -99010151 + HAL1b LINE L1 391 487 -861 274 264 97 51 chr9 43261444 43261660 -99009784 + HAL1b LINE L1 433 658 -690 1092 219 98 16 chr9 43262159 43262474 -99008970 - MER58B DNA MER1_type 0 341 1 2071 149 0 0 chr9 43262823 43263131 -99008313 + AluJb SINE Alu 1 308 -4 245 346 19 39 chr9 43263139 43263243 -99008201 - L2 LINE L2 -23 3249 3148 183 211 0 26 chr9 43263327 43263365 -99008079 + MIR SINE MIR 43 79 -129 1322 168 50 0 chr9 43263761 43264023 -99007421 - L1MA4 LINE L1 -11 6289 6015 36 0 0 0 chr9 43264874 43264910 -99006534 + AT_rich Low_complexity Low_complexity 1 36 0 2318 91 0 3 chr9 43265077 43265373 -99006071 - AluSg SINE Alu -15 295 1 608 274 89 63 chr9 43265451 43265728 -99005716 - L1M4 LINE L1 -1317 4829 4561 944 200 47 33 chr9 43265728 43265943 -99005501 - MER20 DNA MER1_type -1 218 1 608 274 89 63 chr9 43265943 43266303 -99005141 - L1M4 LINE L1 -1585 4561 4175 22 0 0 0 chr9 43266553 43266575 -99004869 + AT_rich Low_complexity Low_complexity 1 22 0 510 204 0 0 chr9 43266683 43266791 -99004653 + (CA)n Simple_repeat Simple_repeat 2 109 0 2412 66 0 10 chr9 43266791 43267094 -99004350 - AluY SINE Alu -11 300 1 342 252 63 0 chr9 43267210 43267337 -99004107 - L1M4 LINE L1 -3793 2353 2219 22 35 0 0 chr9 43267714 43267743 -99003701 + AT_rich Low_complexity Low_complexity 1 29 0 1613 79 23 0 chr9 43268665 43268880 -99002564 + AluSg/x SINE Alu 81 300 -10 2037 127 3 0 chr9 43269682 43270000 -99001444 - AluSx SINE Alu 0 312 1 340 252 82 22 chr9 43270319 43270454 -99000990 + MER103 DNA DNA 14 156 -10 587 233 83 0 chr9 43272387 43272520 -98998924 + L1MD1 LINE L1 158 301 -6242 * 2460 219 116 29 chr9 43272508 43273101 -98998343 + L1MD1 LINE L1 1320 1859 -4681 2340 70 13 0 chr9 43273101 43273402 -98998042 + AluY SINE Alu 1 305 -6 2460 219 116 29 chr9 43273402 43274104 -98997340 + L1MD1 LINE L1 1859 2891 -3649 3104 236 57 56 chr9 43274127 43274781 -98996663 + L1MCb LINE L1 1 653 -5911 2472 41 6 22 chr9 43274781 43275097 -98996347 + AluY SINE Alu 1 311 0 3104 236 57 56 chr9 43275097 43275800 -98995644 + L1MCb LINE L1 653 1354 -5210 2521 46 0 7 chr9 43275800 43276104 -98995340 - AluY SINE Alu -9 302 1 3104 236 57 56 chr9 43276104 43277165 -98994279 + L1MCb LINE L1 1354 2578 -3986 7258 47 5 0 chr9 43277165 43278226 -98993218 + L1PA5 LINE L1 5094 6151 -3 3104 236 57 56 chr9 43278226 43279001 -98992443 + L1MCb LINE L1 2578 3351 -3213 1239 246 47 0 chr9 43279009 43279396 -98992048 + L1MCb LINE L1 3908 4312 -2252 334 131 0 0 chr9 43279402 43279463 -98991981 + L1MC2 LINE L1 6274 6334 -10 6776 220 65 35 chr9 43279468 43280533 -98990911 + L1MD1 LINE L1 2884 3916 -2720 2321 108 0 6 chr9 43280533 43280847 -98990597 - AluSx SINE Alu 0 312 1 6776 220 65 35 chr9 43280847 43283201 -98988243 + L1MD1 LINE L1 3916 6435 -201 2445 61 3 16 chr9 43283201 43283511 -98987933 - AluY SINE Alu -5 306 1 6776 220 65 35 chr9 43283511 43283698 -98987746 + L1MD1 LINE L1 6435 6615 -21 202 211 0 96 chr9 43283812 43283864 -98987580 + MER5B DNA MER1_type 32 78 -100 323 313 62 36 chr9 43283959 43284154 -98987290 - MIR SINE MIR -61 201 2 2116 74 0 7 chr9 43284252 43284522 -98986922 + AluSx SINE Alu 1 268 -44 668 164 9 0 chr9 43284735 43284845 -98986599 - AluJb SINE Alu -17 295 185 2258 97 0 19 chr9 43287125 43287436 -98984008 - AluSx SINE Alu -7 305 1 242 245 0 19 chr9 43287919 43287972 -98983472 - MIR3 SINE MIR -10 198 147 661 147 0 0 chr9 43287977 43288086 -98983358 - FRAM SINE Alu -8 168 60 1575 149 97 49 chr9 43288301 43288556 -98982888 - MER47A DNA MER2_type -1957 366 87 2198 88 0 7 chr9 43288556 43288882 -98982562 + AluSc SINE Alu 1 324 0 1575 149 97 49 chr9 43288882 43288974 -98982470 - MER47A DNA MER2_type -2236 87 1 3395 119 91 56 chr9 43289128 43289171 -98982273 - L1MCa LINE L1 -4740 1686 1646 180 0 0 0 chr9 43289171 43289191 -98982253 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 3395 119 91 56 chr9 43289191 43289326 -98982118 - L1MCa LINE L1 -4780 1646 1517 2141 117 3 3 chr9 43289326 43289616 -98981828 + AluSp SINE Alu 1 290 -23 3395 119 91 56 chr9 43289616 43290209 -98981235 - L1MCa LINE L1 -4909 1517 881 2348 86 0 7 chr9 43290209 43290513 -98980931 - AluY SINE Alu 0 311 10 3395 119 91 56 chr9 43290513 43290561 -98980883 - L1MCa LINE L1 -5545 881 836 1097 161 0 0 chr9 43290565 43290727 -98980717 - AluJb SINE Alu -9 303 142 464 209 18 27 chr9 43290769 43290879 -98980565 - FLAM_C SINE Alu -13 130 22 3594 178 45 21 chr9 43290885 43291161 -98980283 - L1MCa LINE L1 -5602 824 556 275 26 51 0 chr9 43291161 43291200 -98980244 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 3594 178 45 21 chr9 43291200 43291681 -98979763 - L1MCa LINE L1 -5870 556 49 240 311 133 22 chr9 43291854 43291989 -98979455 + MIR3 SINE MIR 42 191 -17 2377 94 0 7 chr9 43292444 43292753 -98978691 - AluSc SINE Alu -2 307 1 24 0 0 0 chr9 43293090 43293114 -98978330 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr9 43293508 43293537 -98977907 + AT_rich Low_complexity Low_complexity 1 29 0 2424 89 0 0 chr9 43295098 43295400 -98976044 + AluY SINE Alu 1 302 -9 624 274 24 0 chr9 43295965 43296129 -98975315 - MER5A DNA MER1_type -5 184 17 614 265 118 0 chr9 43296144 43296348 -98975096 + MIR SINE MIR 22 249 -13 185 196 103 112 chr9 43296398 43296505 -98974939 - L3 LINE CR1 -3 1574 1469 786 198 31 5 chr9 43297590 43297782 -98973662 + L1 LINE L1 4538 4734 -1412 219 233 0 0 chr9 43298595 43298638 -98972806 + CT-rich Low_complexity Low_complexity 3 45 0 2404 53 0 0 chr9 43299115 43299397 -98972047 + AluY SINE Alu 1 282 -29 204 40 0 0 chr9 43299400 43299425 -98972019 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2743 91 3 3 chr9 43299601 43299965 -98971479 + THE1B LTR MaLR 1 364 0 2368 67 7 0 chr9 43301233 43301531 -98969913 - AluY SINE Alu -11 300 1 2173 64 44 24 chr9 43302051 43302349 -98969095 - AluY SINE Alu -7 304 1 439 193 184 0 chr9 43303861 43303975 -98967469 - MER58C DNA MER1_type 0 215 81 2413 77 0 10 chr9 43303979 43304290 -98967154 + AluY SINE Alu 1 308 -3 2103 89 0 40 chr9 43305369 43305672 -98965772 - AluY SINE Alu -20 291 1 2041 141 10 0 chr9 43306260 43306565 -98964879 - AluSx SINE Alu -4 308 1 21 0 0 0 chr9 43308378 43308399 -98963045 + AT_rich Low_complexity Low_complexity 1 21 0 1491 164 47 60 chr9 43309055 43309354 -98962090 + AluJb SINE Alu 1 295 -17 2257 92 0 29 chr9 43310046 43310352 -98961092 - AluY SINE Alu -14 297 1 839 194 14 28 chr9 43311147 43311364 -98960080 + L1MA9 LINE L1 6074 6287 -25 26 0 0 0 chr9 43311364 43311390 -98960054 + AT_rich Low_complexity Low_complexity 1 26 0 879 167 105 29 chr9 43311533 43311743 -98959701 - MLT1B LTR MaLR -164 226 1 256 132 59 0 chr9 43312051 43312119 -98959325 + (TA)n Simple_repeat Simple_repeat 2 73 0 1370 109 0 43 chr9 43312125 43312336 -98959108 - AluSq SINE Alu -109 204 3 405 0 0 0 chr9 43312336 43312381 -98959063 + (TAGA)n Simple_repeat Simple_repeat 2 46 0 1512 215 111 35 chr9 43312554 43313066 -98958378 - MLT1E2 LTR MaLR -65 561 11 6833 177 38 5 chr9 43313156 43314241 -98957203 + L1PA15 LINE L1 3933 4981 -1184 1529 151 81 28 chr9 43314241 43314360 -98957084 + AluJo SINE Alu 2 113 -199 375 23 0 0 chr9 43314360 43314404 -98957040 + (TAA)n Simple_repeat Simple_repeat 2 45 0 1529 151 81 28 chr9 43314404 43314568 -98956876 + AluJo SINE Alu 113 300 -12 6833 177 38 5 chr9 43314568 43315692 -98955752 + L1PA15 LINE L1 4981 6163 -2 2265 106 0 3 chr9 43316249 43316561 -98954883 + AluY SINE Alu 1 311 0 641 250 106 40 chr9 43316639 43316925 -98954519 - MER93b LTR ERV1 -3 370 92 1255 182 87 33 chr9 43317657 43317992 -98953452 - MLT1A1 LTR MaLR -2 363 11 853 219 127 4 chr9 43319327 43319587 -98951857 + LTR37A LTR ERV1 78 369 -57 1916 144 3 3 chr9 43319654 43319961 -98951483 + AluSx SINE Alu 2 308 0 777 173 189 86 chr9 43320631 43320713 -98950731 + LTR37A LTR ERV1 18 90 -336 2491 74 0 3 chr9 43320713 43321023 -98950421 - AluY SINE Alu -2 309 1 777 173 189 86 chr9 43321023 43321311 -98950133 + LTR37A LTR ERV1 90 426 0 518 193 201 31 chr9 43321879 43322046 -98949398 + LTR37A LTR ERV1 111 248 -178 2337 189 127 17 chr9 43322046 43322686 -98948758 + MER67C LTR ERV1 1 710 0 518 193 201 31 chr9 43322686 43322777 -98948667 + LTR37A LTR ERV1 248 413 -13 229 300 55 36 chr9 43323466 43323576 -98947868 - MIR SINE MIR -119 143 32 285 273 13 0 chr9 43324606 43324683 -98946761 - L2 LINE L2 -9 3263 3186 604 144 38 8 chr9 43324735 43324867 -98946577 + LTR37B LTR ERV1 333 468 0 416 310 85 21 chr9 43325072 43325401 -98946043 - L1M4 LINE L1 -1139 5007 4658 551 231 100 6 chr9 43325580 43325740 -98945704 + MER5B DNA MER1_type 2 176 -2 2066 136 16 3 chr9 43327631 43327939 -98943505 + AluSx SINE Alu 1 312 0 1904 100 77 0 chr9 43327942 43328201 -98943243 + AluY SINE Alu 20 298 -13 2096 122 3 3 chr9 43328206 43328509 -98942935 + AluSq SINE Alu 3 305 -8 440 219 48 119 chr9 43329056 43329266 -98942178 - MER58A DNA MER1_type -29 195 1 2259 92 3 0 chr9 43330952 43331235 -98940209 - AluSg SINE Alu -26 284 1 1512 211 64 44 chr9 43331626 43332082 -98939362 - LTR40c LTR ERVL 0 465 1 216 343 14 0 chr9 43332182 43332255 -98939189 + MIR3 SINE MIR 126 199 -9 915 164 0 89 chr9 43332339 43332507 -98938937 + MER3 DNA MER1_type 5 150 -59 2362 81 0 29 chr9 43332507 43332817 -98938627 - AluY SINE Alu -10 301 1 915 164 0 89 chr9 43332817 43332873 -98938571 + MER3 DNA MER1_type 150 209 0 2417 76 0 16 chr9 43333649 43333953 -98937491 + AluSc SINE Alu 1 299 -10 1408 234 37 31 chr9 43334041 43334495 -98936949 - MER31A LTR ERV1 -27 458 2 26 50 0 0 chr9 43335345 43335385 -98936059 + AT_rich Low_complexity Low_complexity 1 40 0 230 143 0 0 chr9 43336091 43336133 -98935311 - L1MA7 LINE L1 -64 6227 6186 2020 147 0 6 chr9 43336377 43336689 -98934755 - AluSx SINE Alu -2 310 1 2222 56 4 0 chr9 43337018 43337320 -98934124 - AluY SINE Alu 0 319 17 277 189 16 0 chr9 43337366 43337444 -98934000 - L1MB5 LINE L1 -42 6132 6050 2057 93 43 0 chr9 43337646 43337926 -98933518 - AluY SINE Alu -19 292 1 708 245 108 20 chr9 43338679 43339158 -98932286 - MER34B LTR ERV1 -1 564 1 198 402 56 9 chr9 43339270 43339377 -98932067 - MER5B DNA MER1_type -12 166 55 2507 47 0 0 chr9 43339545 43339841 -98931603 + AluY SINE Alu 1 296 -15 1443 146 115 56 chr9 43340284 43340571 -98930873 + AluJo SINE Alu 1 304 -8 28 0 0 0 chr9 43342600 43342628 -98928816 + AT_rich Low_complexity Low_complexity 1 28 0 3914 96 24 21 chr9 43343789 43344407 -98927037 - L1MA1 LINE L1 0 6302 5683 238 302 74 33 chr9 43345253 43345434 -98926010 - MIR SINE MIR -49 213 27 186 224 0 0 chr9 43345569 43345618 -98925826 + (TA)n Simple_repeat Simple_repeat 1 49 0 1146 226 78 39 chr9 43345630 43346068 -98925376 + L1ME2 LINE L1 39 493 -5903 445 245 45 36 chr9 43346076 43346151 -98925293 - MER106B DNA MER1_type -5 1054 981 1980 100 0 68 chr9 43346151 43346493 -98924951 - AluY SINE Alu 0 311 1 445 245 45 36 chr9 43346493 43346658 -98924786 - MER106B DNA MER1_type -78 981 1 2690 242 87 68 chr9 43346659 43346915 -98924529 + L1ME2 LINE L1 514 764 -5632 2124 80 14 3 chr9 43346915 43347202 -98924242 + AluY SINE Alu 1 290 -21 2690 242 87 68 chr9 43347202 43348620 -98922824 + L1ME2 LINE L1 764 2220 -4176 * 2756 209 64 36 chr9 43348603 43349614 -98921830 + L1ME2 LINE L1 5176 6224 -9 195 129 0 0 chr9 43349616 43349647 -98921797 + (TATATG)n Simple_repeat Simple_repeat 5 35 0 264 79 0 0 chr9 43350655 43350693 -98920751 - L1M4b LINE L1 -6732 127 90 588 123 41 75 chr9 43351184 43351330 -98920114 - L1P LINE L1 -746 5410 5270 3374 124 33 5 chr9 43351330 43351909 -98919535 + L1PB4 LINE L1 5384 5978 -178 2310 48 0 55 chr9 43351926 43352236 -98919208 + AluY SINE Alu 1 293 -18 2515 53 0 28 chr9 43352353 43352673 -98918771 + AluY SINE Alu 1 311 0 24 0 0 0 chr9 43353197 43353221 -98918223 + AT_rich Low_complexity Low_complexity 1 24 0 1078 78 0 0 chr9 43353783 43353912 -98917532 - AluSg SINE Alu -21 291 163 710 82 0 0 chr9 43353917 43354014 -98917430 - AluSg SINE Alu -213 97 1 284 278 65 37 chr9 43354862 43354970 -98916474 + L3b LINE CR1 1290 1400 -183 23 0 0 0 chr9 43355418 43355441 -98916003 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr9 43355507 43355532 -98915912 + AT_rich Low_complexity Low_complexity 1 25 0 22 35 0 0 chr9 43355768 43355797 -98915647 + AT_rich Low_complexity Low_complexity 1 29 0 2506 61 0 13 chr9 43355871 43356181 -98915263 - AluY SINE Alu -5 306 1 23 33 0 0 chr9 43356342 43356372 -98915072 + AT_rich Low_complexity Low_complexity 1 30 0 855 259 8 59 chr9 43356770 43356910 -98914534 - MIR SINE MIR -37 225 100 2889 142 23 16 chr9 43356910 43357396 -98914048 - LTR45B LTR ERV1 0 489 1 855 259 8 59 chr9 43357396 43357491 -98913953 - MIR SINE MIR -162 100 2 2441 63 0 0 chr9 43357583 43357868 -98913576 + AluY SINE Alu 3 287 -24 910 225 33 101 chr9 43359442 43359480 -98911964 - MLT1A2 LTR MaLR -6 368 329 2392 79 0 16 chr9 43359480 43359796 -98911648 + AluY SINE Alu 1 311 0 910 225 33 101 chr9 43359796 43360152 -98911292 - MLT1A2 LTR MaLR -45 329 1 338 58 39 0 chr9 43361994 43362046 -98909398 + (TTTTC)n Simple_repeat Simple_repeat 2 55 0 15646 207 26 10 chr9 43362379 43365540 -98905904 - L1PA15 LINE L1 -1 6815 3529 1982 63 93 4 chr9 43365540 43365810 -98905634 + AluY SINE Alu 1 294 -17 15646 207 26 10 chr9 43365810 43368058 -98903386 - L1PA15 LINE L1 -3287 3529 1319 228 194 30 45 chr9 43368415 43368482 -98902962 + LTR40c LTR ERVL 5 70 -395 3428 189 38 4 chr9 43368489 43369200 -98902244 + L1MB3 LINE L1 5447 6181 -2 1406 253 34 10 chr9 43369263 43369651 -98901793 + LTR40c LTR ERVL 63 459 -6 210 176 0 0 chr9 43371633 43371684 -98899760 + (TG)n Simple_repeat Simple_repeat 2 52 0 3760 148 105 29 chr9 43371689 43373078 -98898366 + pTR5 LTR ERV1 742 2606 0 348 143 0 0 chr9 43373084 43373154 -98898290 + (TG)n Simple_repeat Simple_repeat 2 71 0 2454 57 0 3 chr9 43373543 43373842 -98897602 - AluY SINE Alu -13 298 1 1880 134 71 34 chr9 43375693 43376044 -98895400 - THE1B LTR MaLR 0 364 1 986 304 116 20 chr9 43376673 43377195 -98894249 + L2 LINE L2 2432 3005 -308 882 230 0 0 chr9 43377199 43377373 -98894071 + MSTB LTR MaLR 5 178 -248 27 29 0 0 chr9 43377717 43377751 -98893693 + AT_rich Low_complexity Low_complexity 1 34 0 2231 105 0 7 chr9 43377851 43378157 -98893287 + AluSq SINE Alu 2 305 -8 440 219 48 119 chr9 43378705 43378915 -98892529 - MER58A DNA MER1_type -29 195 1 301 333 0 0 chr9 43380324 43380426 -98891018 - MER94 DNA DNA -32 102 1 1741 152 118 17 chr9 43381319 43381639 -98889805 + MLT2D LTR ERVL 17 378 -36 516 45 0 0 chr9 43381639 43381706 -98889738 + (CA)n Simple_repeat Simple_repeat 2 68 0 1741 152 118 17 chr9 43381706 43381741 -98889703 + MLT2D LTR ERVL 378 408 -6 21 36 0 0 chr9 43381945 43381973 -98889471 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr9 43382057 43382080 -98889364 + AT_rich Low_complexity Low_complexity 1 23 0 1269 191 141 0 chr9 43383299 43383555 -98887889 + AluJb SINE Alu 1 292 -10 662 258 113 19 chr9 43384004 43384217 -98887227 + MIR SINE MIR 30 262 0 214 244 0 0 chr9 43384703 43384748 -98886696 - L2 LINE L2 -2 3270 3226 1748 171 3 13 chr9 43385023 43385322 -98886122 - AluJo SINE Alu -16 296 1 298 307 118 8 chr9 43385596 43385723 -98885721 + MER5A DNA MER1_type 43 183 -6 1883 144 21 7 chr9 43385801 43386092 -98885352 + AluSx SINE Alu 6 300 -12 2474 215 74 22 chr9 43386124 43386854 -98884590 - L1ME1 LINE L1 -3 6163 5396 233 162 88 29 chr9 43386887 43386955 -98884489 - L1ME1 LINE L1 -1556 4590 4519 204 259 0 37 chr9 43387104 43387158 -98884286 + CT-rich Low_complexity Low_complexity 5 56 0 1769 158 42 3 chr9 43387304 43387589 -98883855 - AluJb SINE Alu -16 296 1 23 54 0 0 chr9 43387589 43387626 -98883818 + AT_rich Low_complexity Low_complexity 1 37 0 362 280 30 87 chr9 43388364 43388709 -98882735 + L1MEd LINE L1 1042 1439 -1304 671 286 56 23 chr9 43388749 43389235 -98882209 + L1MEd LINE L1 1404 1905 -4658 23 54 0 0 chr9 43389306 43389343 -98882101 + AT_rich Low_complexity Low_complexity 1 37 0 678 272 88 16 chr9 43389528 43389969 -98881475 + L1MEd LINE L1 2301 2725 -3657 357 169 28 0 chr9 43390467 43390538 -98880906 + MER116 DNA Mariner 5 77 -3 675 348 112 16 chr9 43391791 43392597 -98878847 - L2 LINE L2 0 3313 2427 219 368 28 9 chr9 43392754 43392860 -98878584 - L2 LINE L2 -606 2708 2601 1499 164 74 0 chr9 43393462 43393731 -98877713 + 7SLRNA srpRNA srpRNA 24 312 -8 183 100 0 0 chr9 43393732 43393762 -98877682 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 181 367 0 0 chr9 43395189 43395238 -98876206 - L2 LINE L2 -20 3293 3245 311 280 28 9 chr9 43396028 43396135 -98875309 - MIR3 SINE MIR 0 208 100 2401 75 3 3 chr9 43396617 43396922 -98874522 + AluY SINE Alu 1 305 -6 2034 160 0 3 chr9 43397135 43397442 -98874002 - AluSx SINE Alu -6 306 1 24 32 0 0 chr9 43398282 43398313 -98873131 + AT_rich Low_complexity Low_complexity 1 31 0 192 318 220 8 chr9 43398850 43398982 -98872462 + MIR SINE MIR 53 212 -50 198 297 14 54 chr9 43399630 43399704 -98871740 - MIR SINE MIR -17 245 175 251 260 48 68 chr9 43399859 43400005 -98871439 + MIR SINE MIR 42 184 -78 289 336 49 7 chr9 43400844 43400987 -98870457 + MIR SINE MIR 22 170 -92 272 322 89 0 chr9 43401463 43401553 -98869891 + MIR SINE MIR 30 127 -81 2163 114 0 32 chr9 43401583 43401891 -98869553 + AluSx SINE Alu 1 298 -14 29 0 0 0 chr9 43402141 43402170 -98869274 + AT_rich Low_complexity Low_complexity 1 29 0 3786 154 39 22 chr9 43403925 43404640 -98866804 + LTR8A LTR ERV1 1 727 0 323 271 21 42 chr9 43404650 43404794 -98866650 - HERVS71 LTR ERV1 -3911 5067 4927 1990 140 72 4 chr9 43404887 43405494 -98865950 + MER50 LTR ERV1 12 711 -23 206 255 0 0 chr9 43406747 43406798 -98864646 + A-rich Low_complexity Low_complexity 1 51 0 1973 91 34 20 chr9 43408389 43408685 -98862759 + AluY SINE Alu 1 300 -11 441 268 54 0 chr9 43410178 43410290 -98861154 - MER8 DNA MER2_type -121 118 1 22 0 0 0 chr9 43410986 43411008 -98860436 + AT_rich Low_complexity Low_complexity 1 22 0 1581 132 0 0 chr9 43411603 43411822 -98859622 - AluSg/x SINE Alu -12 298 80 269 361 172 0 chr9 43412822 43412944 -98858500 - L2 LINE L2 -3 3269 3127 592 268 50 42 chr9 43413421 43413874 -98857570 + MLT1D LTR MaLR 7 505 0 213 39 0 0 chr9 43414252 43414278 -98857166 + (A)n Simple_repeat Simple_repeat 1 26 0 698 120 0 0 chr9 43417354 43417462 -98853982 - L1MA2 LINE L1 0 6304 6197 2046 106 33 10 chr9 43418391 43418693 -98852751 + AluSg SINE Alu 2 310 0 1842 153 55 0 chr9 43418767 43419113 -98852331 - L1MB3 LINE L1 -1 6182 5818 297 205 36 12 chr9 43419125 43419208 -98852236 - L1MB3 LINE L1 -411 5772 5688 668 213 20 87 chr9 43419215 43419410 -98852034 - MIR SINE MIR -48 214 31 351 204 39 29 chr9 43419584 43419687 -98851757 + MER58 DNA MER1_type 24 127 -88 1706 208 0 7 chr9 43419689 43419997 -98851447 + AluJo SINE Alu 1 306 -6 689 228 85 0 chr9 43420144 43420416 -98851028 - L1M3c LINE L1 -4645 1496 1202 651 179 61 14 chr9 43420418 43420593 -98850851 - MSTD LTR MaLR -51 377 155 234 114 0 0 chr9 43420591 43420626 -98850818 - MSTD LTR MaLR -361 35 1 * 5328 137 25 10 chr9 43420647 43422102 -98849342 - L1PA16 LINE L1 -5 6161 4708 11594 36 6 1 chr9 43422254 43424481 -98846963 + L1PA4 LINE L1 3942 6152 -3 286 327 108 16 chr9 43424591 43424842 -98846602 + LTR16C LTR ERVL 169 442 -49 1295 175 59 20 chr9 43425309 43425612 -98845832 - LTR40b LTR ERVL 0 462 148 2350 80 3 0 chr9 43426410 43426709 -98844735 + AluY SINE Alu 1 300 -11 2743 91 3 3 chr9 43427978 43428342 -98843102 - THE1B LTR MaLR 0 364 1 2328 64 0 7 chr9 43428519 43428831 -98842613 - AluY SINE Alu 0 310 1 272 322 89 0 chr9 43428861 43428951 -98842493 - MIR SINE MIR -81 127 30 606 253 146 0 chr9 43429457 43429690 -98841754 - L1MC4 LINE L1 -180 7862 7596 592 106 0 0 chr9 43430061 43430146 -98841298 - AluSg/x SINE Alu -12 298 214 1118 111 6 12 chr9 43430146 43430308 -98841136 - AluSq SINE Alu -152 161 1 2329 76 0 23 chr9 43430957 43431258 -98840186 - AluSq SINE Alu -19 294 1 639 226 7 15 chr9 43433414 43433551 -98837893 + FRAM SINE Alu 1 136 -40 221 197 14 0 chr9 43433610 43433681 -98837763 + GA-rich Low_complexity Low_complexity 3 74 0 2429 230 47 66 chr9 43433697 43434963 -98836481 + L1M1 LINE L1 2598 3825 -3740 2400 93 0 13 chr9 43434963 43435276 -98836168 + AluSg SINE Alu 1 309 -1 2429 230 47 66 chr9 43435276 43435683 -98835761 + L1M1 LINE L1 3825 4238 -3327 21 0 0 0 chr9 43435808 43435829 -98835615 + AT_rich Low_complexity Low_complexity 1 21 0 2331 110 0 3 chr9 43436127 43436437 -98835007 + AluY SINE Alu 1 309 -2 26 50 0 0 chr9 43437884 43437924 -98833520 + AT_rich Low_complexity Low_complexity 1 40 0 17792 65 4 5 chr9 43438355 43440874 -98830570 + L1P LINE L1 951 3466 -2680 302 0 0 26 chr9 43440977 43441016 -98830428 + (CA)n Simple_repeat Simple_repeat 2 39 0 21 36 0 0 chr9 43441277 43441305 -98830139 + AT_rich Low_complexity Low_complexity 1 28 0 1269 191 141 0 chr9 43442632 43442888 -98828556 + AluJb SINE Alu 1 292 -10 492 18 0 0 chr9 43445093 43445150 -98826294 + (TG)n Simple_repeat Simple_repeat 1 57 0 1773 276 56 7 chr9 43446997 43447877 -98823567 - L1MEc LINE L1 -3164 3051 2172 756 155 20 0 chr9 43449519 43449667 -98821777 - L1MB3 LINE L1 -4 6179 6029 312 269 9 9 chr9 43449942 43450050 -98821394 + (TA)n Simple_repeat Simple_repeat 1 108 0 1821 62 0 9 chr9 43450805 43451030 -98820414 + AluY SINE Alu 87 309 -2 490 88 11 11 chr9 43451590 43451681 -98819763 + (GA)n Simple_repeat Simple_repeat 2 92 0 184 267 100 0 chr9 43452575 43452635 -98818809 + MIR SINE MIR 178 243 -19 1414 207 99 14 chr9 43453531 43453884 -98817560 - MLT1B LTR MaLR -4 386 4 268 119 45 0 chr9 43454983 43455050 -98816394 + (TCTA)n Simple_repeat Simple_repeat 4 73 0 281 346 33 25 chr9 43455309 43455605 -98815839 + L2 LINE L2 2791 3090 -223 213 214 0 0 chr9 43455705 43455747 -98815697 + L2 LINE L2 3241 3282 -31 196 239 104 0 chr9 43456059 43456126 -98815318 - MIR SINE MIR -83 179 106 204 338 14 14 chr9 43456183 43456257 -98815187 - MIR SINE MIR -105 103 30 454 204 259 27 chr9 43456281 43456466 -98814978 + MIR SINE MIR 40 262 0 1348 199 10 70 chr9 43456485 43456723 -98814721 - AluJo SINE Alu -15 297 79 1723 104 0 0 chr9 43456723 43456953 -98814491 + AluSg/x SINE Alu 72 301 -9 1348 199 10 70 chr9 43456953 43457015 -98814429 - AluJo SINE Alu -233 79 15 35755 62 10 6 chr9 43457289 43458062 -98813382 + L1PA5 LINE L1 405 1174 -4980 318 23 0 0 chr9 43458062 43458106 -98813338 + L1PA2 LINE L1 6110 6153 -2 35755 62 10 6 chr9 43458106 43463056 -98808388 + L1PA5 LINE L1 1174 6148 -6 1494 192 45 24 chr9 43463244 43463577 -98807867 - MER2 DNA MER2_type -4 340 1 2285 104 13 0 chr9 43463971 43464279 -98807165 - AluSq SINE Alu -1 312 1 2778 182 10 11 chr9 43464641 43465162 -98806282 + MER44D DNA MER2_type 1 575 -30 436 134 268 0 chr9 43466087 43466199 -98805245 - L1MB1 LINE L1 -19 6170 6029 1445 181 16 23 chr9 43466206 43466510 -98804934 + L1M3 LINE L1 5484 5785 -383 26 0 0 0 chr9 43468260 43468286 -98803158 + AT_rich Low_complexity Low_complexity 1 26 0 194 88 0 29 chr9 43468381 43468415 -98803029 + (TCCC)n Simple_repeat Simple_repeat 4 36 0 27 29 0 0 chr9 43468490 43468524 -98802920 + AT_rich Low_complexity Low_complexity 1 34 0 267 167 0 0 chr9 43468829 43468877 -98802567 + Alu SINE Alu 1 48 -254 320 204 157 9 chr9 43469026 43469134 -98802310 - L1MB1 LINE L1 0 6168 6045 1187 220 16 23 chr9 43469148 43469452 -98801992 + L1M3 LINE L1 5484 5785 -383 29 0 0 0 chr9 43471208 43471237 -98800207 + AT_rich Low_complexity Low_complexity 1 29 0 276 30 0 0 chr9 43471456 43471489 -98799955 + (TTCC)n Simple_repeat Simple_repeat 2 34 0 295 129 0 57 chr9 43472201 43472271 -98799173 + (GGGAA)n Simple_repeat Simple_repeat 3 68 0 349 284 29 10 chr9 43473381 43473483 -98797961 - MER5B DNA MER1_type 0 178 75 1788 173 13 7 chr9 43473617 43473918 -98797526 - AluJb SINE Alu -6 306 4 655 288 29 0 chr9 43474437 43474607 -98796837 - MIR SINE MIR -74 188 14 256 159 16 16 chr9 43474890 43474953 -98796491 + GA-rich Low_complexity Low_complexity 2 64 0 3976 119 34 0 chr9 43476424 43477038 -98794406 - MER41B LTR ERV1 0 635 1 292 224 26 0 chr9 43478150 43478226 -98793218 - MER116 DNA Mariner 0 80 3 327 49 0 0 chr9 43479074 43479115 -98792329 + (TA)n Simple_repeat Simple_repeat 2 42 0 240 257 59 10 chr9 43479154 43479255 -98792189 - L1MB1 LINE L1 -290 5884 5779 708 296 57 6 chr9 43479608 43479839 -98791605 + MIR SINE MIR 5 244 -18 294 233 22 11 chr9 43480032 43480122 -98791322 - L1MB1 LINE L1 -2312 5473 5383 2302 69 0 0 chr9 43480127 43480433 -98791011 - AluY SINE Alu 0 311 6 264 281 65 43 chr9 43480722 43480861 -98790583 - L1P LINE L1 -1101 5045 4904 2163 117 0 13 chr9 43480993 43481293 -98790151 - AluSx SINE Alu -16 296 1 800 132 72 6 chr9 43481379 43481546 -98789898 - L1MA8 LINE L1 -2 6289 6112 420 259 80 0 chr9 43481649 43481761 -98789683 + MIR SINE MIR 124 244 -18 310 212 5 25 chr9 43481955 43482046 -98789398 - L1MC/D LINE L1 -674 5447 5380 2244 87 0 0 chr9 43482049 43482364 -98789080 - AluY SINE Alu 0 320 6 287 303 0 28 chr9 43482678 43482787 -98788657 - L1P LINE L1 -1137 5009 4904 2060 127 0 13 chr9 43482919 43483218 -98788226 - AluSx SINE Alu -17 295 1 14120 182 33 36 chr9 43483304 43485319 -98786125 - L1MA8 LINE L1 -2 7708 5689 1617 176 32 7 chr9 43485319 43485603 -98785841 - AluJb SINE Alu -21 291 1 14120 182 33 36 chr9 43485603 43487017 -98784427 - L1MA8 LINE L1 -2021 5689 4272 2120 116 20 0 chr9 43487017 43487318 -98784126 - AluSc SINE Alu -2 307 1 14120 182 33 36 chr9 43487318 43487753 -98783691 - L1MA8 LINE L1 -3438 4272 3837 2293 90 0 13 chr9 43487753 43488052 -98783392 - AluSg SINE Alu -15 295 1 14120 182 33 36 chr9 43488052 43489318 -98782126 - L1MA8 LINE L1 -3873 3837 2598 287 169 14 0 chr9 43489334 43489405 -98782039 + CT-rich Low_complexity Low_complexity 3 74 0 676 257 0 0 chr9 43489456 43489592 -98781852 - FRAM SINE Alu -40 136 1 782 229 83 9 chr9 43489593 43489929 -98781515 - L1M3c LINE L1 -4572 2465 2105 754 170 115 6 chr9 43489945 43490110 -98781334 - MSTD LTR MaLR -59 337 155 245 114 0 0 chr9 43490108 43490143 -98781301 - MSTD LTR MaLR -361 35 1 * 5534 143 19 6 chr9 43490164 43491635 -98779809 - L1PA16 LINE L1 -5 6161 4675 346 237 108 0 chr9 43491663 43491756 -98779688 - L1M3c LINE L1 -6922 108 6 229 263 0 0 chr9 43491832 43491889 -98779555 - L1M4 LINE L1 -1569 4577 4521 2203 90 35 7 chr9 43492130 43492420 -98779024 - AluSq SINE Alu -9 304 7 24 0 0 0 chr9 43492954 43492978 -98778466 + AT_rich Low_complexity Low_complexity 1 24 0 277 308 192 0 chr9 43493159 43493315 -98778129 - MIR SINE MIR -1 261 76 186 343 60 0 chr9 43494663 43494730 -98776714 - MIR SINE MIR -121 141 71 837 120 20 7 chr9 43495019 43495169 -98776275 - L1MB3 LINE L1 -3 6180 6029 235 180 20 0 chr9 43495447 43495497 -98775947 + (TA)n Simple_repeat Simple_repeat 2 52 0 201 74 0 0 chr9 43495521 43495548 -98775896 + (TG)n Simple_repeat Simple_repeat 2 28 0 27 0 0 0 chr9 43495548 43495575 -98775869 + AT_rich Low_complexity Low_complexity 1 27 0 204 324 127 0 chr9 43496991 43497137 -98774307 - L2 LINE L2 -264 3049 2885 519 291 53 93 chr9 43497323 43497698 -98773746 - L2 LINE L2 -658 2656 2297 708 268 113 26 chr9 43498503 43498813 -98772631 - MER46C DNA MER2_type 0 338 2 2157 100 25 0 chr9 43499559 43499880 -98771564 + L1MA2 LINE L1 5976 6304 0 197 274 48 0 chr9 43500538 43500600 -98770844 - L2 LINE L2 -2 3270 3206 1359 210 107 62 chr9 43500606 43501044 -98770400 - MLT1C LTR MaLR -4 463 6 871 102 0 8 chr9 43501542 43501713 -98769731 - AluSp/q SINE Alu 0 336 167 2089 130 0 34 chr9 43501853 43502176 -98769268 + AluSx SINE Alu 1 312 0 23 54 0 0 chr9 43502395 43502432 -98769012 + AT_rich Low_complexity Low_complexity 1 37 0 465 218 73 0 chr9 43503266 43503376 -98768068 + L1MA8 LINE L1 5914 6031 -260 203 136 23 23 chr9 43504171 43504215 -98767229 + (TA)n Simple_repeat Simple_repeat 1 44 0 204 336 33 33 chr9 43504801 43504923 -98766521 + L3 LINE CR1 597 718 -859 2059 119 0 0 chr9 43505227 43505542 -98765902 - AluSc SINE Alu 0 315 1 206 136 23 0 chr9 43507681 43507725 -98763719 + (CAT)n Simple_repeat Simple_repeat 2 46 0 2270 275 39 7 chr9 43508504 43509394 -98762050 + L1MEc LINE L1 2172 3051 -3164 584 214 40 0 chr9 43510873 43510999 -98760445 - L1MD2 LINE L1 -19 6340 6210 266 265 179 26 chr9 43511037 43511154 -98760290 - L1ME1 LINE L1 -90 6076 5942 * 503 206 96 14 chr9 43511152 43511298 -98760146 - L1MDa LINE L1 -6363 177 20 1015 179 17 125 chr9 43511602 43511716 -98759728 - L1ME1 LINE L1 -334 5832 5707 2105 141 36 28 chr9 43511716 43512077 -98759367 - THE1B LTR MaLR 0 364 1 1015 179 17 125 chr9 43512077 43512156 -98759288 - L1ME1 LINE L1 -459 5707 5621 1880 139 10 23 chr9 43512156 43512458 -98758986 - AluSx SINE Alu -14 298 1 1015 179 17 125 chr9 43512458 43512614 -98758830 - L1ME1 LINE L1 -545 5621 5520 1057 213 41 25 chr9 43512644 43512959 -98758485 - L1ME1 LINE L1 -1610 4536 4217 1248 284 11 11 chr9 43512982 43513341 -98758103 + LTR40c LTR ERVL 5 363 -102 297 228 87 11 chr9 43513344 43513436 -98758008 - L1ME LINE L1 -676 5490 5392 * 1093 252 143 49 chr9 43513434 43514045 -98757399 + L1ME2 LINE L1 5488 6163 -1 1183 146 0 6 chr9 43514647 43514825 -98756619 + AluSq SINE Alu 3 179 -134 251 286 43 0 chr9 43514846 43514916 -98756528 + GA-rich Low_complexity Low_complexity 6 78 0 180 0 0 0 chr9 43514917 43514937 -98756507 + (GGGGA)n Simple_repeat Simple_repeat 2 21 0 353 296 0 22 chr9 43516294 43516473 -98754971 + (TA)n Simple_repeat Simple_repeat 2 176 0 241 174 0 0 chr9 43516502 43516548 -98754896 - LTR66 LTR ERVL -171 439 394 204 40 0 0 chr9 43516585 43516610 -98754834 + (CA)n Simple_repeat Simple_repeat 2 26 0 300 253 58 0 chr9 43516698 43516785 -98754659 - L1MC4 LINE L1 -1337 6705 6614 707 120 0 0 chr9 43517733 43517841 -98753603 - L1MA2 LINE L1 0 6304 6197 207 0 0 0 chr9 43517929 43517952 -98753492 + (CAT)n Simple_repeat Simple_repeat 2 24 0 2140 68 21 21 chr9 43518802 43519117 -98752327 + AluSg SINE Alu 2 316 0 1881 147 55 0 chr9 43519189 43519535 -98751909 - L1MB3 LINE L1 -1 6182 5818 341 229 24 0 chr9 43519547 43519630 -98751814 - L1MB3 LINE L1 -411 5772 5688 674 213 20 87 chr9 43519637 43519832 -98751612 - MIR SINE MIR -48 214 31 349 219 21 31 chr9 43520006 43520102 -98751342 + MER58C DNA MER1_type 24 118 -97 1676 204 0 7 chr9 43520111 43520419 -98751025 + AluJo SINE Alu 1 306 -6 317 214 0 12 chr9 43520426 43520510 -98750934 + GA-rich Low_complexity Low_complexity 3 85 0 406 240 39 0 chr9 43520514 43520618 -98750826 + MER58C DNA MER1_type 106 213 -2 2367 164 24 19 chr9 43520628 43521096 -98750348 - L1MA7 LINE L1 0 6291 5822 872 91 15 23 chr9 43522662 43522794 -98748650 - FLAM_C SINE Alu -2 131 1 2397 63 0 60 chr9 43524034 43524365 -98747079 + AluY SINE Alu 1 311 0 21 0 0 0 chr9 43525575 43525596 -98745848 + AT_rich Low_complexity Low_complexity 1 21 0 1819 117 53 0 chr9 43527543 43527851 -98743593 + AluSc SINE Alu 1 322 0 21 0 0 0 chr9 43529170 43529191 -98742253 + AT_rich Low_complexity Low_complexity 1 21 0 2036 108 0 57 chr9 43529191 43529507 -98741937 + AluY SINE Alu 1 298 -13 580 193 0 93 chr9 43530636 43530797 -98740647 - L1ME1 LINE L1 -8 6158 6013 241 381 68 7 chr9 43532858 43533005 -98738439 + L2 LINE L2 3109 3264 -8 2152 126 0 0 chr9 43533450 43533752 -98737692 + AluY SINE Alu 4 305 -6 283 353 172 0 chr9 43534850 43534972 -98736472 - L2 LINE L2 -3 3269 3127 627 268 50 42 chr9 43535451 43535904 -98735540 + MLT1D LTR MaLR 7 505 0 192 77 0 0 chr9 43536282 43536308 -98735136 + (A)n Simple_repeat Simple_repeat 1 26 0 267 281 28 28 chr9 43536782 43536960 -98734484 + MLT1K LTR MaLR 88 265 -323 576 252 48 0 chr9 43537015 43537162 -98734282 - L2 LINE L2 0 3313 3160 312 312 208 9 chr9 43537217 43537438 -98734006 + MLT1K LTR MaLR 309 573 -15 187 350 21 57 chr9 43537712 43537906 -98733538 + L2 LINE L2 2738 2924 -390 1101 70 6 38 chr9 43538650 43538808 -98732636 - AluYb8 SINE Alu -165 153 1 1711 85 15 0 chr9 43539440 43539700 -98731744 + L1MA1 LINE L1 6039 6302 0 26 0 0 0 chr9 43539702 43539728 -98731716 + AT_rich Low_complexity Low_complexity 1 26 0 1773 139 0 0 chr9 43540571 43540823 -98730621 + AluSg SINE Alu 45 296 -14 611 85 0 0 chr9 43541011 43541093 -98730351 + L1PA4 LINE L1 7 88 -6058 31830 51 37 34 chr9 43541093 43546613 -98724831 + L1PA4 LINE L1 617 6152 -3 254 331 108 16 chr9 43546727 43546978 -98724466 + LTR16C LTR ERVL 169 442 -49 1305 175 59 20 chr9 43547450 43547753 -98723691 - LTR40b LTR ERVL 0 462 148 24 0 0 0 chr9 43548186 43548210 -98723234 + AT_rich Low_complexity Low_complexity 1 24 0 629 253 146 0 chr9 43550689 43550922 -98720522 - L1MC4 LINE L1 -180 7862 7596 610 103 0 0 chr9 43551302 43551389 -98720055 - AluSg/x SINE Alu -10 300 214 1143 111 6 12 chr9 43551389 43551551 -98719893 - AluSq SINE Alu -152 161 1 2409 70 0 23 chr9 43552201 43552503 -98718941 - AluSq SINE Alu -18 295 1 22 0 0 0 chr9 43553885 43553907 -98717537 + GC_rich Low_complexity Low_complexity 1 22 0 309 210 153 51 chr9 43554369 43554526 -98716918 - MER96B DNA MER1_type? -244 173 1 2104 85 24 3 chr9 43555215 43555508 -98715936 + AluSc SINE Alu 1 299 -10 21 36 0 0 chr9 43556301 43556329 -98715115 + AT_rich Low_complexity Low_complexity 1 28 0 1970 141 0 16 chr9 43556688 43556993 -98714451 - AluSx SINE Alu -12 300 1 27 29 0 0 chr9 43558255 43558289 -98713155 + AT_rich Low_complexity Low_complexity 1 34 0 2320 110 0 3 chr9 43558591 43558901 -98712543 + AluY SINE Alu 1 309 -2 26 50 0 0 chr9 43560349 43560389 -98711055 + AT_rich Low_complexity Low_complexity 1 40 0 1301 99 10 20 chr9 43560806 43560980 -98710464 - AluY SINE Alu -7 304 131 383 0 21 0 chr9 43560980 43561027 -98710417 + (TG)n Simple_repeat Simple_repeat 2 49 0 1301 99 10 20 chr9 43561027 43561053 -98710391 - AluY SINE Alu -180 131 106 262 0 0 0 chr9 43561055 43561091 -98710353 - AluY SINE Alu -130 171 136 441 0 0 0 chr9 43561091 43561140 -98710304 + (TG)n Simple_repeat Simple_repeat 2 50 0 2324 69 10 0 chr9 43561141 43561432 -98710012 - AluY SINE Alu -17 294 1 2081 130 7 0 chr9 43561658 43561957 -98709487 + AluSx SINE Alu 1 301 -11 3652 117 71 23 chr9 43561968 43562195 -98709249 + L1PA15 LINE L1 5522 5737 -428 2274 88 0 0 chr9 43562195 43562500 -98708944 + AluY SINE Alu 1 305 -6 3652 117 71 23 chr9 43562500 43562880 -98708564 + L1PA15 LINE L1 5737 6158 -7 334 317 148 0 chr9 43562964 43563106 -98708338 + MIR SINE MIR 74 236 -26 2021 258 64 27 chr9 43563221 43564278 -98707166 + L1MEc LINE L1 1562 2617 -3598 2283 103 0 3 chr9 43564278 43564580 -98706864 - AluSq SINE Alu -12 301 1 2021 258 64 27 chr9 43564580 43564812 -98706632 + L1MEc LINE L1 2617 2839 -3376 1741 231 26 30 chr9 43565603 43566133 -98705311 + L1M4 LINE L1 794 1323 -5061 2942 141 103 6 chr9 43566133 43566638 -98704806 + MER41C LTR ERV1 1 554 0 1741 231 26 30 chr9 43566638 43566717 -98704727 + L1M4 LINE L1 1323 1401 -4983 266 266 0 0 chr9 43566738 43566802 -98704642 + L1M4 LINE L1 1595 1658 -4726 * 4913 208 67 48 chr9 43566798 43567037 -98704407 + L1MC2 LINE L1 17 250 -6176 2161 128 10 0 chr9 43567037 43567342 -98704102 + AluSq SINE Alu 1 308 -5 4913 208 67 48 chr9 43567342 43569635 -98701809 + L1MC2 LINE L1 250 2575 -3851 1148 194 35 10 chr9 43569830 43570118 -98701326 + LTR43 LTR ERV1 176 470 -132 5211 235 47 81 chr9 43570200 43572737 -98698707 + L1MC2 LINE L1 2564 5014 -1412 1757 189 53 7 chr9 43572736 43573154 -98698290 + L1MC2 LINE L1 6187 6623 -1 * 1228 260 36 4 chr9 43573159 43573636 -98697808 + L1M4 LINE L1 2398 2889 -3493 452 266 18 50 chr9 43573640 43573816 -98697628 + L1M4c LINE L1 1491 1660 -4724 2477 70 0 0 chr9 43573816 43574115 -98697329 + AluY SINE Alu 1 299 -12 452 266 18 50 chr9 43574115 43574156 -98697288 + L1M4c LINE L1 1660 1701 -4683 4587 83 15 0 chr9 43574580 43575341 -98696103 + L1P3 LINE L1 4692 5461 -711 2421 45 7 7 chr9 43575364 43575672 -98695772 - AluY SINE Alu -3 308 1 903 116 177 22 chr9 43575672 43575853 -98695591 + THE1B LTR MaLR 156 364 0 907 250 68 27 chr9 43575855 43576647 -98694797 + L1M4c LINE L1 2616 3631 -2751 250 146 55 0 chr9 43576668 43576723 -98694721 + L1M4c LINE L1 3784 3841 -2541 1490 219 50 50 chr9 43576726 43577205 -98694239 + L1MB8 LINE L1 5694 6172 -6 276 259 35 65 chr9 43577713 43577883 -98693561 + L1M4 LINE L1 3180 3344 -3038 2264 89 0 0 chr9 43577994 43578286 -98693158 - AluSc SINE Alu -17 292 1 652 234 30 52 chr9 43578663 43578921 -98692523 + L1MC4 LINE L1 7803 7995 0 1732 185 25 48 chr9 43579432 43579908 -98691536 - L1MA7 LINE L1 0 6291 5827 2384 192 35 79 chr9 43579920 43580695 -98690749 - L1 LINE L1 -2777 3369 2629 2466 68 3 3 chr9 43580724 43581034 -98690410 - AluY SINE Alu -1 310 1 23 78 0 0 chr9 43581086 43581137 -98690307 + AT_rich Low_complexity Low_complexity 1 51 0 24 77 0 0 chr9 43581754 43581806 -98689638 + AT_rich Low_complexity Low_complexity 1 52 0 198 0 0 0 chr9 43582457 43582479 -98688965 + (T)n Simple_repeat Simple_repeat 1 22 0 1493 178 70 13 chr9 43582613 43582928 -98688516 + THE1C LTR MaLR 43 375 0 10661 106 38 46 chr9 43582928 43583058 -98688386 + THE1C-int LTR MaLR 1 130 -1450 2108 118 3 3 chr9 43583058 43583363 -98688081 + AluSq SINE Alu 5 309 -4 10661 106 38 46 chr9 43583363 43584824 -98686620 + THE1C-int LTR MaLR 130 1580 0 2307 128 56 14 chr9 43584824 43585184 -98686260 + THE1C LTR MaLR 1 375 0 766 150 0 0 chr9 43585547 43585690 -98685754 - AluSc SINE Alu 0 310 168 2063 171 31 51 chr9 43586315 43586765 -98684679 + MER66B LTR ERV1 46 486 0 325 290 131 9 chr9 43587735 43587842 -98683602 + MIR3 SINE MIR 14 133 -75 293 289 104 38 chr9 43588847 43589165 -98682279 - L1ME3A LINE L1 -222 5948 5610 2262 109 3 0 chr9 43589265 43589567 -98681877 - AluY SINE Alu -8 303 1 203 332 129 17 chr9 43589639 43589871 -98681573 - L2 LINE L2 -128 3185 2928 982 217 9 19 chr9 43589915 43590127 -98681317 + Tigger6a DNA MER2_type 2 211 -872 1704 224 41 37 chr9 43590127 43590586 -98680858 - MLT1C LTR MaLR 0 467 7 * 3530 184 93 33 chr9 43590573 43591195 -98680249 + Tigger6a DNA MER2_type 216 900 -697 1968 112 47 0 chr9 43591195 43591473 -98679971 + AluY SINE Alu 3 293 -18 3530 184 93 33 chr9 43591473 43591669 -98679775 + Tigger6a DNA MER2_type 900 1083 0 1632 176 39 73 chr9 43592190 43592486 -98678958 - MER67B LTR ERV1 -108 452 272 2142 115 24 0 chr9 43592486 43592782 -98678662 - AluSc SINE Alu -6 303 1 1632 176 39 73 chr9 43592782 43593046 -98678398 - MER67B LTR ERV1 -288 272 1 32 67 0 0 chr9 43593457 43593517 -98677927 + AT_rich Low_complexity Low_complexity 1 60 0 21 0 0 0 chr9 43593554 43593575 -98677869 + AT_rich Low_complexity Low_complexity 1 21 0 838 119 147 0 chr9 43593707 43593850 -98677594 + AluSg/x SINE Alu 121 284 -28 21 0 0 0 chr9 43594138 43594159 -98677285 + AT_rich Low_complexity Low_complexity 1 21 0 1486 218 65 27 chr9 43594204 43594607 -98676837 + MER67B LTR ERV1 1 418 -243 2051 120 0 0 chr9 43596473 43596749 -98674695 - AluSc SINE Alu -33 276 1 279 234 65 42 chr9 43597343 43597498 -98673946 - L1M4 LINE L1 -1090 5056 4911 245 257 40 0 chr9 43597667 43597741 -98673703 - L1M4 LINE L1 -1437 4709 4633 * 614 273 105 28 chr9 43597740 43597910 -98673534 - L1M4 LINE L1 -2042 4104 3949 2271 90 0 10 chr9 43597910 43598209 -98673235 - AluY SINE Alu -15 296 1 614 273 105 28 chr9 43598209 43598401 -98673043 - L1M4 LINE L1 -2197 3949 3714 264 316 51 6 chr9 43598503 43598661 -98672783 - L1M4 LINE L1 -2607 3539 3375 401 225 121 44 chr9 43598681 43598863 -98672581 - L1ME3A LINE L1 -11 6159 5964 2430 69 0 10 chr9 43598955 43599258 -98672186 - AluY SINE Alu -11 300 1 229 150 0 0 chr9 43599300 43599340 -98672104 - LTR66 LTR ERVL -173 437 398 4832 144 68 25 chr9 43599342 43599813 -98671631 - L1MC1 LINE L1 -11 6322 5873 205 27 81 0 chr9 43599813 43599850 -98671594 + T-rich Low_complexity Low_complexity 1 40 0 2018 95 0 18 chr9 43599850 43600134 -98671310 - AluY SINE Alu -32 279 1 4832 144 68 25 chr9 43600134 43600512 -98670932 - L1MC1 LINE L1 -459 5874 5435 661 246 156 60 chr9 43600530 43601206 -98670238 - L1ME3A LINE L1 -329 5841 5106 2193 74 10 17 chr9 43601230 43601527 -98669917 + AluY SINE Alu 1 295 -16 729 168 25 0 chr9 43601790 43601909 -98669535 - LTR12 LTR ERV1 -234 480 359 225 258 0 0 chr9 43601914 43601980 -98669464 - LTR30 LTR ERV1 -104 618 553 643 116 45 95 chr9 43601981 43602216 -98669228 - LTR12 LTR ERV1 -429 285 1 305 318 127 62 chr9 43602225 43602691 -98668753 - L1MEd LINE L1 -5560 559 64 22 0 0 0 chr9 43603404 43603426 -98668018 + AT_rich Low_complexity Low_complexity 1 22 0 2877 19 0 0 chr9 43603750 43604065 -98667379 - AluYb8 SINE Alu -3 315 1 993 116 177 22 chr9 43604065 43604246 -98667198 + THE1B LTR MaLR 156 364 0 773 243 69 32 chr9 43604248 43605116 -98666328 + L1MB8 LINE L1 2380 3605 -2541 1667 216 49 55 chr9 43605119 43605606 -98665838 + L1MB8 LINE L1 5694 6177 -1 339 259 35 65 chr9 43606106 43606276 -98665168 + L1M4 LINE L1 2944 3108 -3038 2277 89 0 0 chr9 43606387 43606679 -98664765 - AluSc SINE Alu -17 292 1 758 234 30 52 chr9 43607056 43607314 -98664130 + L1MC4 LINE L1 7803 7995 0 992 194 0 0 chr9 43608321 43608486 -98662958 - AluJb SINE Alu -15 297 133 1879 124 0 4 chr9 43608501 43608767 -98662677 + AluSc SINE Alu 35 299 -10 2286 91 17 0 chr9 43609546 43609843 -98661601 + AluSx SINE Alu 5 306 -6 809 86 17 0 chr9 43609980 43610096 -98661348 - AluY SINE Alu -4 307 190 2274 109 0 3 chr9 43610333 43610644 -98660800 + AluY SINE Alu 1 310 -1 2417 91 0 3 chr9 43610902 43611211 -98660233 + AluSc SINE Alu 1 308 -1 248 305 96 5 chr9 43612629 43612816 -98658628 - HAL1 LINE L1 -814 1693 1490 408 318 56 13 chr9 43612835 43613068 -98658376 + HAL1 LINE L1 1491 1733 -774 1526 191 3 7 chr9 43613752 43614059 -98657385 + AluSx SINE Alu 1 306 0 4965 143 50 32 chr9 43614269 43614787 -98656657 - L1MA9 LINE L1 0 6312 5768 246 32 0 0 chr9 43614787 43614818 -98656626 + (TG)n Simple_repeat Simple_repeat 2 32 0 4965 143 50 32 chr9 43614818 43615263 -98656181 - L1MA9 LINE L1 -544 5768 5332 2063 161 42 31 chr9 43615263 43615623 -98655821 + THE1B LTR MaLR 1 364 0 11446 128 9 0 chr9 43615623 43617189 -98654255 + THE1B-int LTR MaLR 1 1580 0 2170 147 35 46 chr9 43617189 43617485 -98653959 + THE1B LTR MaLR 1 294 -70 2240 110 0 0 chr9 43617485 43617775 -98653669 - AluY SINE Alu -21 290 1 2170 147 35 46 chr9 43617775 43617846 -98653598 + THE1B LTR MaLR 294 364 0 4596 212 63 17 chr9 43617856 43618715 -98652729 - L1MA9 LINE L1 -857 5289 4366 1898 99 91 0 chr9 43618715 43618978 -98652466 - AluY SINE Alu -24 287 1 4596 212 63 17 chr9 43618978 43619234 -98652210 - L1MA9 LINE L1 -1780 4366 4123 5662 216 83 32 chr9 43619251 43619622 -98651822 + L1MCa LINE L1 1773 2124 -4302 2037 184 24 0 chr9 43619622 43619958 -98651486 - MER7A DNA MER2_type -1 345 4 5662 216 83 32 chr9 43619958 43621206 -98650238 + L1MCa LINE L1 2124 3552 -2874 2003 94 25 0 chr9 43621206 43621516 -98649928 + AluY SINE Alu 1 317 0 5662 216 83 32 chr9 43621516 43621953 -98649491 + L1MCa LINE L1 3552 3965 -2461 14576 137 28 15 chr9 43622076 43624423 -98647021 + Tigger1 DNA MER2_type 1 2377 -41 296 163 0 0 chr9 43624640 43624683 -98646761 + Tigger1 DNA MER2_type 2375 2417 -1 2202 250 58 42 chr9 43624841 43625569 -98645875 + L1M2 LINE L1 2 1126 -5722 4094 86 17 0 chr9 43625573 43626099 -98645345 + L1PA10 LINE L1 5629 6163 -5 326 169 11 0 chr9 43626566 43626655 -98644789 + C-rich Low_complexity Low_complexity 3 92 0 315 0 0 0 chr9 43627527 43627562 -98643882 + (TG)n Simple_repeat Simple_repeat 2 36 0 1947 128 11 3 chr9 43627588 43627924 -98643520 - AluSx SINE Alu 0 338 1 2030 142 3 0 chr9 43634129 43634424 -98637020 - AluSq SINE Alu -17 296 1 2198 110 3 10 chr9 43636805 43637105 -98634339 - AluSx SINE Alu -14 298 1 21 36 0 0 chr9 43638133 43638161 -98633283 + AT_rich Low_complexity Low_complexity 1 28 0 2218 104 0 22 chr9 43638248 43638565 -98632879 - AluY SINE Alu -1 310 1 2272 82 3 28 chr9 43639989 43640308 -98631136 + AluY SINE Alu 1 311 0 199 256 256 22 chr9 43640674 43640811 -98630633 + MIR SINE MIR 21 189 -73 2253 101 10 7 chr9 43640936 43641242 -98630202 + AluSq SINE Alu 1 307 -6 399 315 78 17 chr9 43641782 43642014 -98629430 - MER41B LTR ERV1 -209 426 181 549 108 0 0 chr9 43643374 43643448 -98627996 - MLT1B LTR MaLR 0 390 317 3158 42 5 23 chr9 43643466 43643852 -98627592 - L1PA3 LINE L1 0 6155 5777 1773 172 12 15 chr9 43643852 43644184 -98627260 - MLT1B LTR MaLR -59 331 1 2233 114 0 10 chr9 43644238 43644546 -98626898 + AluSq SINE Alu 1 305 -8 414 0 0 0 chr9 43644891 43644937 -98626507 + (TA)n Simple_repeat Simple_repeat 2 47 0 3232 132 31 19 chr9 43645841 43645953 -98625491 - L1MA8 LINE L1 -172 6119 6008 1665 263 98 21 chr9 43645953 43646618 -98624826 - L1PA8A LINE L1 -123 6008 5293 1246 173 235 12 chr9 43646964 43647288 -98624156 + MSTD LTR MaLR 1 396 0 2334 190 7 17 chr9 43647341 43647757 -98623687 - LOR1b LTR ERV1 0 461 50 292 323 10 50 chr9 43647818 43647917 -98623527 - L2 LINE L2 -42 3230 3136 2446 89 0 0 chr9 43648159 43648461 -98622983 + AluSg SINE Alu 1 302 -8 1889 248 105 40 chr9 43648461 43649119 -98622325 + L1ME1 LINE L1 5462 6162 -4 206 143 61 0 chr9 43649132 43649181 -98622263 + (TA)n Simple_repeat Simple_repeat 2 53 0 2318 58 24 17 chr9 43649216 43649509 -98621935 - AluY SINE Alu -16 295 1 251 346 94 24 chr9 43649783 43649910 -98621534 - L2 LINE L2 0 3272 3137 2457 77 0 3 chr9 43650426 43650726 -98620718 + AluY SINE Alu 1 299 -12 2059 120 41 0 chr9 43652184 43652475 -98618969 + AluSp SINE Alu 1 303 -10 473 273 165 6 chr9 43652602 43652778 -98618666 + MIR SINE MIR 59 262 0 1999 190 14 11 chr9 43652956 43653320 -98618124 - MLT1A1 LTR MaLR 0 365 1 274 150 0 67 chr9 43653636 43653696 -98617748 + L1MB7 LINE L1 6128 6183 -1 5714 124 22 4 chr9 43653953 43654797 -98616647 - Tigger1 DNA MER2_type -1554 864 5 2396 86 10 0 chr9 43654798 43655102 -98616342 + AluSp SINE Alu 1 307 -6 1488 243 18 47 chr9 43655109 43655668 -98615776 + L1M4 LINE L1 3087 3629 -2517 23 0 0 0 chr9 43656424 43656447 -98614997 + AT_rich Low_complexity Low_complexity 1 23 0 2072 110 13 7 chr9 43657702 43658002 -98613442 - AluSx SINE Alu -10 302 1 2373 82 0 0 chr9 43658258 43658562 -98612882 + AluSx SINE Alu 5 308 -4 2336 97 0 3 chr9 43658562 43658871 -98612573 + AluSc SINE Alu 1 308 -1 2041 70 59 7 chr9 43659279 43659581 -98611863 + AluY SINE Alu 1 316 0 2221 117 0 3 chr9 43659587 43659887 -98611557 + AluSx SINE Alu 1 299 -13 332 319 200 42 chr9 43661314 43661733 -98609711 - L3 LINE CR1 -227 1350 999 2253 98 3 13 chr9 43661733 43662039 -98609405 - AluSg SINE Alu -7 303 1 332 319 200 42 chr9 43662039 43662264 -98609180 - L3 LINE CR1 -578 999 604 5066 225 37 51 chr9 43662743 43662922 -98608522 + L1M4 LINE L1 3776 3956 -2190 1987 132 3 38 chr9 43662922 43663241 -98608203 + AluSg SINE Alu 1 308 -2 5066 225 37 51 chr9 43663241 43663485 -98607959 + L1M4 LINE L1 3956 4202 -1944 2453 84 0 0 chr9 43663485 43663795 -98607649 + AluY SINE Alu 1 310 -1 5066 225 37 51 chr9 43663795 43664948 -98606496 + L1M4 LINE L1 4202 5330 -816 2224 111 0 0 chr9 43664949 43665246 -98606198 + AluSg SINE Alu 1 297 -13 1657 69 0 28 chr9 43665766 43665984 -98605460 - AluY SINE Alu -2 309 98 323 118 39 0 chr9 43666085 43666136 -98605308 - Tigger1 DNA MER2_type -2321 97 45 1407 186 8 12 chr9 43666136 43666383 -98605061 + AluSx SINE Alu 1 246 -66 362 250 64 104 chr9 43666448 43666514 -98604930 + L1MDa LINE L1 813 880 -5660 2213 112 13 0 chr9 43666514 43666817 -98604627 + AluSq SINE Alu 1 307 -6 362 250 64 104 chr9 43666817 43666970 -98604474 + L1MDa LINE L1 880 1023 -5517 1337 279 138 20 chr9 43666996 43668419 -98603025 - L1M4 LINE L1 -1034 5112 3509 357 24 0 0 chr9 43668424 43668466 -98602978 + (CA)n Simple_repeat Simple_repeat 1 42 0 771 237 60 30 chr9 43668781 43669013 -98602431 + MLT1A1 LTR MaLR 127 365 0 369 265 95 45 chr9 43669022 43669222 -98602222 - L1M4 LINE L1 -2803 3343 3134 1949 119 43 0 chr9 43669277 43669555 -98601889 - AluSx SINE Alu -22 290 1 768 122 8 8 chr9 43669555 43669678 -98601766 - THE1C-int LTR MaLR -1457 123 1 1719 165 70 13 chr9 43669678 43669993 -98601451 - THE1C LTR MaLR 0 375 43 198 0 0 0 chr9 43670127 43670149 -98601295 + (A)n Simple_repeat Simple_repeat 1 22 0 24 77 0 0 chr9 43670800 43670852 -98600592 + AT_rich Low_complexity Low_complexity 1 52 0 951 236 66 18 chr9 43671562 43671896 -98599548 - L1M4 LINE L1 -3128 3018 2669 658 279 64 45 chr9 43672356 43672668 -98598776 - L1MDa LINE L1 -6189 351 34 1943 153 0 3 chr9 43672798 43673086 -98598358 + AluJo SINE Alu 1 287 -25 963 124 7 0 chr9 43677037 43677182 -98594262 - L1P LINE L1 -5314 832 687 458 117 13 26 chr9 43677692 43677769 -98593675 - L1MB8 LINE L1 0 6178 6103 1804 171 24 3 chr9 43677769 43678067 -98593377 - MER2 DNA MER2_type -41 304 1 2918 203 78 13 chr9 43678069 43678691 -98592753 - L1MB7 LINE L1 -98 6086 5415 1610 198 58 68 chr9 43678691 43679085 -98592359 - MLT1B LTR MaLR 0 390 1 2918 203 78 13 chr9 43679085 43679142 -98592302 - L1MB7 LINE L1 -769 5415 5363 2283 79 41 0 chr9 43679414 43679706 -98591738 + AluY SINE Alu 1 304 -7 321 304 114 43 chr9 43680100 43680380 -98591064 + L1M4 LINE L1 2716 3015 -3131 200 279 29 0 chr9 43680404 43680472 -98590972 + A-rich Low_complexity Low_complexity 2 71 0 723 108 185 0 chr9 43680757 43680887 -98590557 + AluY SINE Alu 2 155 -156 1739 70 58 4 chr9 43681001 43681243 -98590201 + AluY SINE Alu 53 307 -4 2180 106 17 0 chr9 43681380 43681672 -98589772 - AluSx SINE Alu -11 301 5 2144 120 0 3 chr9 43682461 43682761 -98588683 - AluSc SINE Alu -10 299 1 2426 77 0 6 chr9 43683012 43683324 -98588120 + AluY SINE Alu 1 310 -1 992 194 0 0 chr9 43683919 43684084 -98587360 - AluJb SINE Alu -15 297 133 270 179 30 30 chr9 43684473 43684540 -98586904 + (CATA)n Simple_repeat Simple_repeat 2 68 0 2060 143 10 7 chr9 43684566 43684874 -98586570 + AluSg1 SINE Alu 1 309 0 1091 107 24 48 chr9 43685143 43685311 -98586133 + LTR1 LTR ERV1 622 785 0 297 183 7 33 chr9 43685393 43685550 -98585894 + CT-rich Low_complexity Low_complexity 1 152 0 11389 155 10 19 chr9 43685601 43687003 -98584441 + L1PA13 LINE L1 3142 4509 -1654 2339 110 0 0 chr9 43687003 43687304 -98584140 + AluSc SINE Alu 1 301 -8 11389 155 10 19 chr9 43687304 43688268 -98583176 + L1PA13 LINE L1 4509 5480 -683 265 155 113 0 chr9 43688274 43688345 -98583099 + L1M4 LINE L1 2617 2695 -3451 1537 104 0 0 chr9 43688432 43688653 -98582791 - L1PA13 LINE L1 -4 6159 5939 4020 109 32 0 chr9 43688687 43689310 -98582134 + L1PA13 LINE L1 5476 6118 -45 1244 135 69 22 chr9 43689353 43689627 -98581817 + LTR1 LTR ERV1 1 287 -498 2299 58 4 0 chr9 43689665 43689943 -98581501 - AluY SINE Alu -32 279 1 524 92 53 0 chr9 43690158 43690234 -98581210 - MADE1 DNA Mariner 0 80 1 1088 159 95 4 chr9 43690993 43691225 -98580219 - MLT1C LTR MaLR 0 467 215 1549 206 16 44 chr9 43691614 43691929 -98579515 - AluJo SINE Alu -6 306 1 2199 164 51 7 chr9 43692087 43692501 -98578943 + MSTB1 LTR MaLR 1 432 0 1553 176 0 70 chr9 43692766 43692936 -98578508 - AluJo SINE Alu 0 306 166 2810 91 3 0 chr9 43692936 43693299 -98578145 - THE1B LTR MaLR 0 364 1 1553 176 0 70 chr9 43693299 43693455 -98577989 - AluJo SINE Alu -140 166 1 2099 107 10 13 chr9 43694801 43695099 -98576345 + AluSq SINE Alu 1 297 -16 2345 103 0 3 chr9 43695649 43695961 -98575483 - AluSx SINE Alu -1 311 1 441 330 44 19 chr9 43698590 43698905 -98572539 + L1M4 LINE L1 4573 4895 -1251 23 33 0 0 chr9 43698964 43698994 -98572450 + AT_rich Low_complexity Low_complexity 1 30 0 775 297 127 49 chr9 43699136 43699549 -98571895 + L1M4 LINE L1 4470 4849 -1297 2188 74 0 45 chr9 43699549 43699884 -98571560 + AluSx SINE Alu 1 312 0 775 297 127 49 chr9 43699884 43700104 -98571340 + L1M4 LINE L1 4849 5050 -1096 2356 68 7 0 chr9 43700104 43700397 -98571047 - AluY SINE Alu -16 295 1 775 297 127 49 chr9 43700397 43700517 -98570927 + L1M4 LINE L1 5050 5283 -863 2458 67 0 0 chr9 43700693 43700993 -98570451 - AluY SINE Alu -11 300 1 370 137 42 63 chr9 43701760 43701855 -98569589 - L1MD2 LINE L1 -2 6357 6265 946 100 0 15 chr9 43702771 43702901 -98568543 - AluSc SINE Alu -181 128 1 2398 96 0 3 chr9 43703344 43703657 -98567787 + AluSx SINE Alu 1 312 0 402 220 52 14 chr9 43704456 43704619 -98566825 - L1MA10 LINE L1 -10 6315 5985 249 92 53 79 chr9 43704631 43704707 -98566737 - L1M4 LINE L1 -1690 4456 4383 1046 91 0 0 chr9 43704726 43704858 -98566586 - AluY SINE Alu -179 132 1 258 260 70 0 chr9 43704880 43704980 -98566464 - L1M4 LINE L1 -1783 4363 4257 924 234 167 21 chr9 43705012 43705396 -98566048 - L1M4 LINE L1 -1871 4275 3836 4371 168 25 11 chr9 43705403 43706304 -98565140 - L1MB1 LINE L1 -1 6167 5254 3564 197 42 2 chr9 43706305 43707131 -98564313 - L1MB1 LINE L1 -1085 5061 4203 349 247 0 0 chr9 43707857 43707946 -98563498 - L1MB1 LINE L1 -2104 4042 3954 4403 166 22 12 chr9 43708034 43708939 -98562505 - L1MB1 LINE L1 -1 6167 5254 7337 200 30 3 chr9 43708940 43710669 -98560775 - L1MB1 LINE L1 -1085 5061 3288 1772 251 44 7 chr9 43710691 43711301 -98560143 - L1MB1 LINE L1 -2291 3855 3223 626 202 113 8 chr9 43711294 43711532 -98559912 - L1MEc LINE L1 -3961 2435 2173 * 3161 138 77 45 chr9 43711582 43711895 -98559549 + MER4D LTR ERV1 1 303 -600 2192 119 0 19 chr9 43711895 43712213 -98559231 - AluSx SINE Alu 0 312 1 3161 138 77 45 chr9 43712213 43712536 -98558908 + MER4D LTR ERV1 303 657 -246 1901 181 44 29 chr9 43712585 43713123 -98558321 + MLT2A2 LTR ERVL 1 554 0 1173 177 5 0 chr9 43713124 43713333 -98558111 + MER4B LTR ERV1 399 608 -2 895 192 48 24 chr9 43713337 43713587 -98557857 - L1MEc LINE L1 -4300 2096 1841 33974 68 67 7 chr9 43713594 43719385 -98552059 + L1PA5 LINE L1 2 6141 -13 1069 278 65 46 chr9 43719408 43719956 -98551488 - L1MEc LINE L1 -4547 1849 1276 2119 139 0 3 chr9 43719956 43720259 -98551185 - AluSx SINE Alu -10 302 1 1069 278 65 46 chr9 43720259 43720617 -98550827 - L1MEc LINE L1 -5120 1276 926 * 1262 224 154 4 chr9 43720611 43721092 -98550352 - L1MCa LINE L1 -3981 2445 1893 1670 162 36 12 chr9 43721144 43721478 -98549966 - L1MB4 LINE L1 0 6180 5839 1050 208 34 0 chr9 43721478 43721714 -98549730 + MLT1B LTR MaLR 9 252 -138 2105 64 38 0 chr9 43721715 43721982 -98549462 + AluY SINE Alu 3 279 -32 216 0 0 0 chr9 43721982 43722006 -98549438 + (CAAA)n Simple_repeat Simple_repeat 4 27 0 2071 71 0 8 chr9 43722011 43722299 -98549145 + AluY SINE Alu 41 311 0 40 37 0 0 chr9 43722534 43722588 -98548856 + AT_rich Low_complexity Low_complexity 1 54 0 429 282 8 8 chr9 43724073 43724197 -98547247 - MLT1I LTR MaLR -268 141 18 7313 184 32 21 chr9 43725298 43726664 -98544780 + L1PB4 LINE L1 3167 4559 -1587 1823 86 55 24 chr9 43726664 43726919 -98544525 + AluY SINE Alu 35 297 -14 7313 184 32 21 chr9 43726919 43727319 -98544125 + L1PB4 LINE L1 4559 4953 -1193 241 231 0 0 chr9 43727326 43727378 -98544066 + LTR30 LTR ERV1 1 52 -670 1922 139 14 99 chr9 43727401 43727817 -98543627 + LTR12 LTR ERV1 100 480 -234 3999 159 54 36 chr9 43727818 43728168 -98543276 + L1PB4 LINE L1 4957 5299 -857 1742 135 25 53 chr9 43728168 43728487 -98542957 + AluSx SINE Alu 1 310 -2 3999 159 54 36 chr9 43728487 43729297 -98542147 + L1PB4 LINE L1 5299 6156 0 2085 111 0 13 chr9 43729807 43730105 -98541339 + AluSx SINE Alu 1 294 -18 214 221 88 29 chr9 43730947 43731015 -98540429 - MIR SINE MIR -145 117 46 2024 101 42 39 chr9 43731302 43731610 -98539834 - AluSg SINE Alu -1 309 1 260 283 125 20 chr9 43731723 43731875 -98539569 + L1MC4a LINE L1 5746 5913 -1895 1634 91 0 5 chr9 43732171 43732391 -98539053 - AluSq SINE Alu -12 301 83 288 189 54 99 chr9 43732563 43732674 -98538770 + MER77 LTR ERV1 493 598 -7 1527 46 0 0 chr9 43733869 43734042 -98537402 + AluY SINE Alu 1 173 -138 2100 135 0 3 chr9 43734305 43734609 -98536835 + AluSc SINE Alu 7 309 0 361 309 90 5 chr9 43736040 43736228 -98535216 - HAL1 LINE L1 -814 1693 1490 337 317 54 13 chr9 43736247 43736471 -98534973 + HAL1 LINE L1 1491 1723 -784 2442 90 0 3 chr9 43737560 43737870 -98533574 - AluSc SINE Alu 0 309 1 2212 119 0 3 chr9 43738115 43738427 -98533017 - AluY SINE Alu 0 311 1 576 303 126 66 chr9 43739621 43740089 -98531355 + L1MEd LINE L1 64 559 -5560 1295 162 40 72 chr9 43740098 43740523 -98530921 + LTR12 LTR ERV1 1 2219 -219 21 0 0 0 chr9 43740714 43740735 -98530709 + AT_rich Low_complexity Low_complexity 1 21 0 2252 67 7 20 chr9 43740786 43741084 -98530360 - AluY SINE Alu -17 294 1 273 279 58 7 chr9 43741110 43741264 -98530180 + L1ME3A LINE L1 5108 5269 -877 543 266 93 83 chr9 43741301 43741783 -98529661 + L1ME3A LINE L1 5355 5841 -329 4493 139 64 31 chr9 43741801 43742179 -98529265 + L1MC1 LINE L1 5435 5799 -534 2228 92 0 16 chr9 43742179 43742495 -98528949 + AluY SINE Alu 1 311 0 4493 139 64 31 chr9 43742495 43742976 -98528468 + L1MC1 LINE L1 5799 6322 -11 211 215 13 25 chr9 43742976 43742993 -98528451 + (TATATG)n Simple_repeat Simple_repeat 2 18 -61 339 104 0 0 chr9 43742993 43743041 -98528403 + L1MC1 LINE L1 6269 6316 -17 211 215 13 25 chr9 43743041 43743102 -98528342 + (TATATG)n Simple_repeat Simple_repeat 18 79 0 2406 81 0 0 chr9 43743128 43743426 -98528018 + AluY SINE Alu 1 298 -13 1471 209 0 35 chr9 43743609 43743932 -98527512 - AluJo SINE Alu 0 323 11 647 229 113 75 chr9 43744160 43744492 -98526952 - L1MC5 LINE L1 -14 7947 7582 2127 109 0 53 chr9 43744492 43744814 -98526630 - AluSx SINE Alu -7 305 1 647 229 113 75 chr9 43744814 43745058 -98526386 - L1MC5 LINE L1 -379 7582 7349 977 268 92 31 chr9 43745497 43746001 -98525443 - L2 LINE L2 -165 3148 2606 201 39 0 0 chr9 43746589 43746615 -98524829 + (TG)n Simple_repeat Simple_repeat 2 27 0 2563 58 0 3 chr9 43748527 43748838 -98522606 + AluY SINE Alu 1 310 -1 2411 201 35 77 chr9 43748839 43749642 -98521802 + L1 LINE L1 2601 3369 -2777 1705 183 34 47 chr9 43749654 43750125 -98521319 + L1MA7 LINE L1 5827 6291 0 691 234 32 52 chr9 43751380 43751637 -98519807 - L1MD3 LINE L1 0 8042 7803 2358 80 0 0 chr9 43752010 43752309 -98519135 + AluSc SINE Alu 1 299 -10 248 265 35 65 chr9 43752420 43752590 -98518854 - L1M4 LINE L1 -3038 3108 2944 2455 50 0 20 chr9 43752632 43752931 -98518513 - AluY SINE Alu -18 293 1 1469 219 50 50 chr9 43753424 43753903 -98517541 - L1MB8 LINE L1 -6 6172 5694 250 146 55 0 chr9 43753906 43753961 -98517483 - L1M4 LINE L1 -2541 3841 3784 595 254 56 31 chr9 43753982 43754781 -98516663 - L1M4 LINE L1 -2751 3631 2616 900 116 177 22 chr9 43754783 43754964 -98516480 - THE1B LTR MaLR 0 364 156 4723 88 9 0 chr9 43754964 43755729 -98515715 - L1P3 LINE L1 -712 5460 4692 444 271 18 50 chr9 43756168 43756209 -98515235 - L1M4 LINE L1 -4683 1701 1660 2433 74 0 0 chr9 43756209 43756505 -98514939 - AluY SINE Alu -15 296 1 444 271 18 50 chr9 43756505 43756681 -98514763 - L1M4 LINE L1 -4724 1660 1491 1239 258 36 4 chr9 43756685 43757162 -98514282 - L1M4 LINE L1 -3493 2653 2162 1843 177 57 12 chr9 43757167 43757585 -98513859 - L1MC2 LINE L1 -1 6343 5907 4244 238 50 56 chr9 43757585 43759361 -98512083 - L1M4 LINE L1 -1413 4733 2969 348 180 34 0 chr9 43759472 43759561 -98511883 - L1M4 LINE L1 -3189 2957 2866 198 0 0 0 chr9 43759675 43759697 -98511747 + (A)n Simple_repeat Simple_repeat 1 22 0 2136 115 0 32 chr9 43760015 43760327 -98511117 - AluSq SINE Alu -11 302 1 2461 43 3 13 chr9 43760630 43760934 -98510510 - AluY SINE Alu -10 301 1 2018 146 48 19 chr9 43761299 43761743 -98509701 + LTR56 LTR ERV1 10 437 0 5465 218 49 45 chr9 43762242 43763588 -98507856 + MLT1A1-int LTR MaLR 379 1729 -6 718 214 108 54 chr9 43763593 43763727 -98507717 + MLT1A1 LTR MaLR 1 126 -270 1449 203 140 9 chr9 43763727 43764077 -98507367 - MSTD LTR MaLR 0 396 1 718 214 108 54 chr9 43764077 43764280 -98507164 + MLT1A1 LTR MaLR 126 396 0 879 293 285 41 chr9 43764280 43765112 -98506332 + L2 LINE L2 1459 2493 -821 768 293 32 18 chr9 43765214 43765497 -98505947 - MLT1H LTR MaLR -259 290 4 557 326 79 9 chr9 43765708 43765935 -98505509 + L2 LINE L2 2828 3070 -243 1625 132 17 7 chr9 43766428 43766723 -98504721 - L1MA9 LINE L1 -59 6253 5956 859 231 50 11 chr9 43766784 43767065 -98504379 - L1M4 LINE L1 -1546 4600 4309 345 250 62 10 chr9 43767070 43767166 -98504278 - L1M4 LINE L1 -3002 3144 3044 2215 196 25 6 chr9 43767168 43767658 -98503786 + L1 LINE L1 4660 5158 -988 344 239 37 69 chr9 43767661 43767879 -98503565 - L1M4 LINE L1 -955 5191 4981 362 267 14 48 chr9 43768031 43768108 -98503336 + L1M4 LINE L1 4865 4943 -1203 1749 201 23 58 chr9 43768108 43768312 -98503132 + MLT2D LTR ERVL 1 211 -203 2353 64 11 0 chr9 43768312 43768616 -98502828 + AluY SINE Alu 1 307 0 1749 201 23 58 chr9 43768616 43768787 -98502657 + MLT2D LTR ERVL 211 363 -51 237 108 0 0 chr9 43768787 43768824 -98502620 + (TAGA)n Simple_repeat Simple_repeat 4 40 0 1749 201 23 58 chr9 43768824 43768875 -98502569 + MLT2D LTR ERVL 363 414 0 362 267 14 48 chr9 43768875 43768943 -98502501 + L1M4 LINE L1 4943 5005 -1141 32 57 0 0 chr9 43769003 43769056 -98502388 + AT_rich Low_complexity Low_complexity 1 53 0 397 250 37 61 chr9 43769128 43769292 -98502152 - MIR SINE MIR -5 257 98 2432 70 0 3 chr9 43769372 43769674 -98501770 + AluY SINE Alu 1 301 -10 38 61 0 0 chr9 43769897 43769963 -98501481 + AT_rich Low_complexity Low_complexity 1 66 0 242 300 126 58 chr9 43770718 43770941 -98500503 + MIR SINE MIR 9 246 -16 1818 125 0 4 chr9 43771396 43771644 -98499800 + AluSx SINE Alu 44 290 -22 210 71 0 0 chr9 43771867 43771895 -98499549 + (CA)n Simple_repeat Simple_repeat 2 29 0 2755 10 0 0 chr9 43771952 43772253 -98499191 + AluYa5 SINE Alu 1 301 -10 364 162 0 0 chr9 43772958 43773026 -98498418 - MSTA LTR MaLR 0 428 361 599 206 23 0 chr9 43774474 43774605 -98496839 - MER5B DNA MER1_type -1 177 44 1872 158 16 10 chr9 43775078 43775381 -98496063 + AluSx SINE Alu 1 305 -7 2805 10 0 0 chr9 43775525 43775833 -98495611 - AluYa5 SINE Alu -3 308 1 632 287 275 33 chr9 43776249 43776693 -98494751 - MLT1F1 LTR MaLR 0 595 3 2260 24 0 0 chr9 43777313 43777565 -98493879 - AluYa8 SINE Alu -8 302 51 2468 69 0 3 chr9 43777957 43778262 -98493182 - AluY SINE Alu -7 304 1 352 272 64 16 chr9 43778266 43778391 -98493053 + MER58B DNA MER1_type 197 327 -14 3860 135 56 42 chr9 43778460 43779065 -98492379 + LTR39 LTR ERV1 1 620 -163 2394 46 0 0 chr9 43779065 43779368 -98492076 + AluY SINE Alu 1 303 0 3860 135 56 42 chr9 43779368 43779516 -98491928 + LTR39 LTR ERV1 620 765 -18 291 192 0 0 chr9 43779535 43779587 -98491857 + MER5A DNA MER1_type 23 74 -115 2161 117 3 16 chr9 43779589 43779905 -98491539 + AluSq SINE Alu 1 312 -1 775 80 18 0 chr9 43779917 43780030 -98491414 + LTR12 LTR ERV1 1 115 -599 238 328 16 0 chr9 43780052 43780177 -98491267 + LTR30 LTR ERV1 517 643 -79 1080 171 20 0 chr9 43780179 43780378 -98491066 + LTR12 LTR ERV1 379 581 -133 196 174 65 0 chr9 43780788 43780834 -98490610 + MIR SINE MIR 96 144 -118 2148 133 0 3 chr9 43781012 43781321 -98490123 - AluSg SINE Alu -2 308 1 1892 119 43 36 chr9 43783132 43783434 -98488010 - AluSx SINE Alu -8 304 1 25 90 0 0 chr9 43783674 43783741 -98487703 + AT_rich Low_complexity Low_complexity 1 67 0 308 264 119 25 chr9 43784404 43784639 -98486805 + LTR41 LTR ERVL 511 767 -6 2650 140 42 26 chr9 43784820 43785363 -98486081 + LTR49 LTR ERV1 1 492 -50 274 223 64 11 chr9 43785742 43785836 -98485608 - LTR41 LTR ERVL -672 101 3 2286 68 0 14 chr9 43786263 43786548 -98484896 + AluY SINE Alu 1 283 -28 984 22 30 8 chr9 43786548 43786682 -98484762 + (TATAA)n Simple_repeat Simple_repeat 4 140 0 21 0 0 0 chr9 43787032 43787053 -98484391 + AT_rich Low_complexity Low_complexity 1 21 0 2243 76 13 3 chr9 43787212 43787515 -98483929 - AluY SINE Alu -5 306 1 2274 79 3 23 chr9 43788352 43788656 -98482788 - AluSx SINE Alu -12 300 3 576 214 23 0 chr9 43789645 43789776 -98481668 - MER5B DNA MER1_type -1 177 44 1904 162 3 10 chr9 43790253 43790555 -98480889 + AluSx SINE Alu 1 300 -12 384 217 61 17 chr9 43791105 43791220 -98480224 - MLT1F1 LTR MaLR 0 595 476 * 659 280 44 21 chr9 43791208 43791548 -98479896 - MLT1F1 LTR MaLR -179 351 3 264 295 80 45 chr9 43794250 43794362 -98477082 - L2 LINE L2 -2 3270 3155 590 273 77 16 chr9 43795239 43795433 -98476011 + MIR SINE MIR 37 242 -20 374 314 44 6 chr9 43796510 43796669 -98474775 - MIR3 SINE MIR -11 197 33 250 291 127 0 chr9 43798465 43798544 -98472900 + L2 LINE L2 3182 3270 -43 1659 155 182 19 chr9 43798590 43798958 -98472486 - MSTA LTR MaLR 0 428 1 4041 152 20 0 chr9 43799474 43800160 -98471284 - L1PA16 LINE L1 -15 6151 5452 411 147 24 0 chr9 43800162 43800269 -98471175 - L1 LINE L1 -814 5332 5224 21 36 0 0 chr9 43801403 43801431 -98470013 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr9 43801580 43801604 -98469840 + AT_rich Low_complexity Low_complexity 1 24 0 2024 195 27 20 chr9 43801611 43802048 -98469396 - MER21B LTR ERV1 -3 860 421 1304 68 0 109 chr9 43802048 43802269 -98469175 - MER107 DNA MER1_type 0 197 1 1660 223 33 8 chr9 43802270 43802637 -98468807 - MER21B LTR ERV1 -445 418 43 422 208 0 0 chr9 43802635 43802712 -98468732 - MER21B LTR ERV1 -769 94 18 * 384 175 62 72 chr9 43802718 43802815 -98468629 - MER21B LTR ERV1 -767 96 1 539 283 26 43 chr9 43802829 43803059 -98468385 - L1ME1 LINE L1 -34 6132 5907 * 1088 198 39 47 chr9 43803058 43803480 -98467964 + L1M4c LINE L1 2295 2722 -3660 1085 213 161 2 chr9 43803471 43803874 -98467570 - L1M4 LINE L1 -1049 5097 4631 * 269 250 21 0 chr9 43803875 43803971 -98467473 - L1M4 LINE L1 -2144 4002 3905 886 169 17 0 chr9 43804127 43804305 -98467139 - L1MC3 LINE L1 -747 7038 6858 279 343 52 41 chr9 43805892 43806064 -98465380 + L2 LINE L2 2199 2372 -942 202 345 99 63 chr9 43806531 43806783 -98464661 + L2 LINE L2 2550 2810 -504 4459 42 2 7 chr9 43806817 43807370 -98464074 + L1PA4 LINE L1 5606 6155 0 8601 86 4 8 chr9 43807609 43808814 -98462630 + L1P3 LINE L1 1 1200 -5261 3382 182 42 4 chr9 43808819 43809518 -98461926 - L1P LINE L1 -1798 4348 3624 240 203 0 0 chr9 43809523 43809582 -98461862 - L1PA12 LINE L1 -5501 2080 2022 1114 314 38 75 chr9 43809590 43811053 -98460391 - L1PA12 LINE L1 -6117 1464 56 286 285 73 32 chr9 43811823 43811946 -98459498 - MIR SINE MIR -21 241 114 970 244 47 60 chr9 43811953 43812383 -98459061 + MLT2B1 LTR ERVL 1 424 -40 411 202 0 0 chr9 43812391 43812480 -98458964 + (CA)n Simple_repeat Simple_repeat 2 90 0 245 198 279 0 chr9 43812493 43812579 -98458865 - MIR SINE MIR -132 130 21 652 142 24 110 chr9 43812640 43812800 -98458644 + MER6 DNA MER2_type -64 108 -757 2362 53 0 47 chr9 43812800 43813119 -98458325 - AluY SINE Alu -7 304 1 652 142 24 110 chr9 43813119 43813170 -98458274 + MER6 DNA MER2_type 108 864 -1 434 314 28 8 chr9 43813175 43813343 -98458101 - MIR SINE MIR -42 166 1 223 316 13 13 chr9 43814069 43814145 -98457299 - MIR SINE MIR -147 115 40 572 181 125 0 chr9 43815606 43815750 -98455694 - MER3 DNA MER1_type -80 129 15 352 253 11 0 chr9 43816167 43816254 -98455190 + MLT1K LTR MaLR 331 418 -170 1459 174 25 0 chr9 43816341 43816583 -98454861 + AluJo SINE Alu 43 290 -22 2159 151 49 58 chr9 43816855 43816981 -98454463 + MSTB LTR MaLR 1 127 -299 2451 52 0 7 chr9 43816981 43817286 -98454158 + AluY SINE Alu 1 303 -8 2159 151 49 58 chr9 43817286 43817538 -98453906 + MSTB LTR MaLR 127 377 -49 2496 46 0 13 chr9 43817538 43817845 -98453599 + AluY SINE Alu 1 303 -8 2159 151 49 58 chr9 43817845 43817895 -98453549 + MSTB LTR MaLR 377 426 0 2528 62 0 0 chr9 43819251 43819560 -98451884 + AluY SINE Alu 1 309 -2 225 229 16 49 chr9 43820507 43820568 -98450876 - MIR SINE MIR 0 262 204 183 336 154 55 chr9 43820915 43821299 -98450145 + L2 LINE L2 150 571 -2743 22 0 0 0 chr9 43821385 43821407 -98450037 + AT_rich Low_complexity Low_complexity 1 22 0 251 345 93 7 chr9 43821864 43822003 -98449441 + L2 LINE L2 1179 1329 -1985 237 291 68 48 chr9 43822047 43822150 -98449294 - L2 LINE L2 0 3272 3168 214 331 69 47 chr9 43822132 43822625 -98448819 + L2 LINE L2 1466 1969 -1345 * 2052 120 0 3 chr9 43822649 43822933 -98448511 - AluSq SINE Alu -30 283 1 208 295 105 21 chr9 43823112 43823207 -98448237 + L2 LINE L2 3171 3273 -40 2264 52 42 7 chr9 43823265 43823551 -98447893 + AluY SINE Alu 3 298 -13 876 334 63 19 chr9 43823594 43824019 -98447425 - L2 LINE L2 -4 3309 2866 602 200 7 7 chr9 43824281 43824421 -98447023 - L1MB8 LINE L1 -8 6170 6031 1698 78 0 0 chr9 43824427 43824632 -98446812 + AluSg SINE Alu 1 205 -105 355 156 0 16 chr9 43824632 43824690 -98446754 + AluSg SINE Alu 245 301 0 800 168 24 0 chr9 43824726 43824893 -98446551 - L1MB8 LINE L1 -194 5984 5814 * 9007 214 71 35 chr9 43824892 43825722 -98445722 - L1MB2 LINE L1 -9 6398 5600 189 0 0 0 chr9 43825722 43825743 -98445701 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 9007 214 71 35 chr9 43825743 43826114 -98445330 - L1MB2 LINE L1 -807 5600 5244 1507 140 70 28 chr9 43826114 43826399 -98445045 - AluJo SINE Alu -15 297 1 9007 214 71 35 chr9 43826399 43827150 -98444294 - L1MB2 LINE L1 -1163 5244 4522 369 0 0 0 chr9 43827150 43827191 -98444253 + (TG)n Simple_repeat Simple_repeat 2 42 0 9007 214 71 35 chr9 43827191 43829622 -98441822 - L1MB2 LINE L1 -1885 4522 1800 2124 103 0 48 chr9 43829622 43829932 -98441512 - AluY SINE Alu -16 295 1 9007 214 71 35 chr9 43829932 43830456 -98440988 - L1MB2 LINE L1 -4607 1800 1297 1181 293 28 30 chr9 43830576 43831047 -98440397 + L1PA13 LINE L1 1 470 -6317 5118 215 7 21 chr9 43831289 43832641 -98438803 + L1 LINE L1 2841 4174 -1972 621 61 12 0 chr9 43832643 43832725 -98438719 + AluY SINE Alu 1 83 -227 305 285 51 68 chr9 43833185 43833420 -98438024 - MER67C LTR ERV1 -479 231 1 283 255 64 64 chr9 43833797 43833949 -98437495 - MIR3 SINE MIR -36 172 3 261 224 0 15 chr9 43834138 43834205 -98437239 - MER92C LTR ERV1 -2 552 487 939 215 10 0 chr9 43834261 43834456 -98436988 - MER92C LTR ERV1 -170 384 188 2513 80 0 3 chr9 43834569 43834881 -98436563 + AluY SINE Alu 1 311 0 1281 7 0 0 chr9 43835266 43835402 -98436042 - AluY SINE Alu -175 136 1 732 265 52 26 chr9 43835506 43835736 -98435708 + L2 LINE L2 2392 2627 -687 936 235 24 62 chr9 43835742 43836031 -98435413 + MER70B LTR ERVL 4 281 -297 201 254 143 32 chr9 43837958 43838084 -98433360 - L2 LINE L2 0 3313 3174 1971 141 0 32 chr9 43838121 43838433 -98433011 + AluSx SINE Alu 1 302 -10 907 256 124 25 chr9 43838664 43839066 -98432378 - LTR16A1 LTR ERVL 0 457 16 219 315 14 0 chr9 43839453 43839526 -98431918 + GA-rich Low_complexity Low_complexity 1 74 0 2242 103 6 6 chr9 43839606 43839917 -98431527 + AluSp SINE Alu 1 311 -2 1811 251 13 57 chr9 43840130 43840673 -98430771 - MLT2B1 LTR ERVL 0 520 2 21185 184 46 23 chr9 43840674 43844639 -98426805 - ERVL LTR ERVL -7 5757 1701 2431 138 70 2 chr9 43844639 43845037 -98426407 + MSTA LTR MaLR 1 425 -3 1856 238 61 7 chr9 43845038 43845462 -98425982 - ERVL LTR ERVL -4057 1707 1261 1140 162 91 50 chr9 43845462 43845703 -98425741 + MER47B DNA MER2_type 1 251 -167 1336 120 48 10 chr9 43845731 43845939 -98425505 - L1PB1 LINE L1 0 6151 5936 2356 158 13 10 chr9 43845939 43846337 -98425107 + Tigger5 DNA MER2_type 1924 2322 -1 2829 228 71 11 chr9 43846338 43847502 -98423942 - ERVL LTR ERVL -4502 1262 4 1211 245 71 58 chr9 43847525 43847921 -98423523 - MLT2B1 LTR ERVL 0 520 120 2327 63 0 66 chr9 43849162 43849481 -98421963 + AluY SINE Alu 1 298 -13 1653 16 0 0 chr9 43849506 43849690 -98421754 + AluYb8 SINE Alu 133 316 -2 3658 131 39 0 chr9 43850077 43850610 -98420834 - MER41C LTR ERV1 0 554 1 250 208 111 28 chr9 43851302 43851374 -98420070 - MER5A DNA MER1_type -77 112 35 21 0 0 0 chr9 43852064 43852085 -98419359 + AT_rich Low_complexity Low_complexity 1 21 0 1196 214 64 10 chr9 43852265 43852578 -98418866 + L1ME1 LINE L1 5822 6151 -15 2288 107 3 0 chr9 43852883 43853191 -98418253 - AluSg SINE Alu -1 309 1 251 118 0 0 chr9 43853241 43853275 -98418169 + Alu SINE Alu 1 34 -274 1084 53 8 8 chr9 43853380 43853511 -98417933 + AluY SINE Alu 1 131 -180 1239 190 0 65 chr9 43853532 43853591 -98417853 + L1 LINE L1 4164 4225 -1921 2143 125 0 3 chr9 43853591 43853888 -98417556 - AluSx SINE Alu -16 296 1 1239 190 0 65 chr9 43853888 43854016 -98417428 + L1 LINE L1 4225 4326 -1820 2930 164 58 24 chr9 43854016 43854554 -98416890 + LTR38 LTR ERV1 1 556 0 1239 190 0 65 chr9 43854554 43854675 -98416769 + L1 LINE L1 4326 4453 -1693 5820 128 14 17 chr9 43856118 43857810 -98413634 + L1PA16 LINE L1 4441 6150 -16 890 217 47 19 chr9 43858740 43858952 -98412492 + MLT1A2 LTR MaLR 157 374 0 2051 141 3 0 chr9 43860013 43860317 -98411127 - AluSq SINE Alu -8 305 1 23 33 0 0 chr9 43860400 43860430 -98411014 + AT_rich Low_complexity Low_complexity 1 30 0 358 234 21 0 chr9 43860598 43860692 -98410752 - MIR SINE MIR -92 170 75 2628 49 0 0 chr9 43861047 43861354 -98410090 - AluY SINE Alu -4 307 1 2039 125 0 7 chr9 43861671 43861985 -98409459 - AluSg SINE Alu 0 312 1 2091 144 64 25 chr9 43862210 43862748 -98408696 - MLT2A2 LTR ERVL 0 554 4 595 208 195 0 chr9 43863260 43863414 -98408030 - MIR SINE MIR -43 219 36 2909 9 0 9 chr9 43864214 43864535 -98406909 + AluYb8 SINE Alu 1 318 0 311 313 54 7 chr9 43864660 43864807 -98406637 - MIR SINE MIR -70 192 39 2624 53 0 0 chr9 43865653 43865956 -98405488 - AluY SINE Alu -8 303 1 358 206 0 0 chr9 43867601 43867669 -98403775 + MER105 DNA DNA 137 204 0 304 346 10 0 chr9 43868428 43868532 -98402912 + MIR SINE MIR 43 147 -61 590 304 82 0 chr9 43868548 43868742 -98402702 + L2 LINE L2 1246 1455 -1859 1130 202 113 64 chr9 43868751 43869029 -98402415 + MLT1A1 LTR MaLR 2 302 -63 2137 126 7 0 chr9 43869029 43869330 -98402114 - AluSq SINE Alu -10 303 1 1130 202 113 64 chr9 43869330 43869397 -98402047 + MLT1A1 LTR MaLR 302 364 -1 8261 205 38 46 chr9 43869399 43871147 -98400297 + MLT1A1-int LTR MaLR 2 1735 0 845 214 108 54 chr9 43871147 43871281 -98400163 + MLT1A1 LTR MaLR 1 126 -270 1601 206 140 9 chr9 43871281 43871631 -98399813 - MSTD LTR MaLR 0 396 1 845 214 108 54 chr9 43871631 43871834 -98399610 + MLT1A1 LTR MaLR 126 396 0 917 291 298 39 chr9 43871834 43872630 -98398814 + L2 LINE L2 1459 2460 -854 868 265 67 30 chr9 43872748 43873046 -98398398 - MLT1H LTR MaLR -237 312 4 542 338 31 18 chr9 43873260 43873485 -98397959 + L2 LINE L2 2843 3070 -243 2817 3 0 0 chr9 43873663 43873963 -98397481 + AluYa5 SINE Alu 1 300 -11 1824 122 17 7 chr9 43874287 43874582 -98396862 - L1MA9 LINE L1 -59 6253 5956 923 250 91 18 chr9 43874584 43874924 -98396520 - L1M4 LINE L1 -1473 4673 4309 278 253 63 0 chr9 43874929 43875024 -98396420 - L1M4 LINE L1 -3002 3144 3044 2501 196 24 4 chr9 43875026 43875522 -98395922 + L1 LINE L1 4660 5165 -981 406 244 37 69 chr9 43875519 43875736 -98395708 - L1M4 LINE L1 -956 5190 4981 * 396 267 14 48 chr9 43875894 43875971 -98395473 + L1M4 LINE L1 4865 4936 -1210 1603 183 15 154 chr9 43875971 43876175 -98395269 + MLT2D LTR ERVL 1 101 -313 2336 67 11 0 chr9 43876175 43876459 -98394985 + AluY SINE Alu 1 287 -24 1603 183 15 154 chr9 43876459 43876735 -98394709 + MLT2D LTR ERVL 101 414 0 396 267 14 48 chr9 43876735 43876803 -98394641 + L1M4 LINE L1 4936 5005 -1141 32 57 0 0 chr9 43876863 43876916 -98394528 + AT_rich Low_complexity Low_complexity 1 53 0 367 256 37 61 chr9 43876988 43877152 -98394292 - MIR SINE MIR -5 257 98 2480 69 0 3 chr9 43877232 43877538 -98393906 + AluY SINE Alu 1 305 -6 2813 13 0 3 chr9 43877563 43877872 -98393572 + AluYb8 SINE Alu 1 308 -10 394 162 0 0 chr9 43878181 43878249 -98393195 - THE1C LTR MaLR 0 428 361 1464 161 62 26 chr9 43879880 43880185 -98391259 - THE1C LTR MaLR -59 316 1 186 43 0 0 chr9 43880208 43880231 -98391213 + (TA)n Simple_repeat Simple_repeat 1 23 0 1934 73 15 27 chr9 43880231 43880491 -98390953 - AluSx SINE Alu -4 308 52 317 259 12 12 chr9 43881599 43881684 -98389760 + MER5A DNA MER1_type 3 87 -102 22 70 0 0 chr9 43882547 43882590 -98388854 + AT_rich Low_complexity Low_complexity 1 43 0 380 348 14 0 chr9 43883265 43883403 -98388041 + L2 LINE L2 2721 2860 -454 2254 132 0 54 chr9 43883569 43883939 -98387505 + L1PB4 LINE L1 5794 6143 -13 2733 159 29 23 chr9 43884127 43884611 -98386833 - LTR22B LTR ERVK -5 487 1 1338 183 26 57 chr9 43885249 43885594 -98385850 - MER89 LTR ERV1 0 559 165 704 221 27 0 chr9 43885658 43885807 -98385637 - MER89-int LTR ERV1 0 6801 6649 1651 148 45 39 chr9 43885808 43886219 -98385225 + LTR12 LTR ERV1 1 480 -234 513 274 13 13 chr9 43886408 43886561 -98384883 - MER52A LTR ERV1 0 1755 1603 1082 222 66 82 chr9 43886569 43887196 -98384248 - MER52A LTR ERV1 -285 1470 711 2177 192 55 59 chr9 43887196 43887706 -98383738 - MER89-int LTR ERV1 -242 6559 6052 2196 83 0 23 chr9 43887805 43888105 -98383339 + AluY SINE Alu 1 293 -18 4973 233 55 61 chr9 43888255 43889665 -98381779 - MER89-int LTR ERV1 -2904 3897 354 5135 289 90 68 chr9 43889896 43890105 -98381339 - MER89-int LTR ERV1 -4265 2536 2333 1755 155 3 67 chr9 43890105 43890421 -98381023 - AluSx SINE Alu -16 296 1 5135 289 90 68 chr9 43890421 43890652 -98380792 - MER89-int LTR ERV1 -4468 2333 2109 1910 152 9 25 chr9 43890652 43890968 -98380476 + AluSx SINE Alu 1 311 -1 5135 289 90 68 chr9 43890968 43893006 -98378438 - MER89-int LTR ERV1 -4692 2109 2 2180 127 0 13 chr9 43893019 43893334 -98378110 + AluSx SINE Alu 1 311 -1 1379 235 50 1 chr9 43893339 43893807 -98377637 - MER89 LTR ERV1 -4 555 3 23 33 0 0 chr9 43894858 43894888 -98376556 + AT_rich Low_complexity Low_complexity 1 30 0 23 68 0 0 chr9 43895078 43895122 -98376322 + AT_rich Low_complexity Low_complexity 1 44 0 2418 82 3 0 chr9 43895226 43895532 -98375912 + AluY SINE Alu 1 307 -4 240 248 98 53 chr9 43896395 43896528 -98374916 + L1MEd LINE L1 2 140 -5979 6291 152 26 7 chr9 43896868 43897981 -98373463 - L1P LINE L1 -818 5328 4195 2404 88 0 0 chr9 43898092 43898388 -98373056 - AluY SINE Alu -15 296 1 298 148 0 19 chr9 43898396 43898450 -98372994 - L1ME LINE L1 -299 5822 5770 415 198 0 153 chr9 43898838 43898885 -98372559 - MER58B DNA MER1_type -2080 340 287 2910 170 85 2 chr9 43898885 43899392 -98372052 + MER44D DNA MER2_type 2 605 0 415 198 0 153 chr9 43899392 43899444 -98372000 - MER58B DNA MER1_type -2133 287 271 2720 157 39 35 chr9 43899444 43899929 -98371515 + LTR45B LTR ERV1 3 489 0 415 198 0 153 chr9 43899929 43899985 -98371459 - MER58B DNA MER1_type -2149 271 208 756 187 136 51 chr9 43900265 43900336 -98371108 - L1ME2 LINE L1 -278 5886 5822 2117 97 10 7 chr9 43900336 43900626 -98370818 + AluSx SINE Alu 1 291 -21 756 187 136 51 chr9 43900626 43900811 -98370633 - L1ME2 LINE L1 -342 5822 5608 2526 51 14 0 chr9 43900820 43901115 -98370329 - AluY SINE Alu -12 299 1 25 31 0 0 chr9 43901264 43901296 -98370148 + AT_rich Low_complexity Low_complexity 1 32 0 2189 108 11 0 chr9 43901422 43901708 -98369736 + AluSq SINE Alu 2 290 -23 573 133 0 22 chr9 43901967 43902057 -98369387 + AluS SINE Alu 2 89 -223 1880 110 4 0 chr9 43902079 43902334 -98369110 + AluSx SINE Alu 44 299 -13 499 192 115 10 chr9 43905569 43905673 -98365771 + MER54A LTR ERVL 516 630 -271 * 1308 182 17 4 chr9 43905668 43905899 -98365545 + MER54B LTR ERVL 560 793 0 876 220 18 35 chr9 43905905 43906132 -98365312 + L1M4 LINE L1 4099 4321 -1825 274 304 0 0 chr9 43907000 43907069 -98364375 + MIR SINE MIR 83 151 -111 4329 129 29 2 chr9 43907312 43907930 -98363514 - MER41B LTR ERV1 0 635 1 422 159 75 37 chr9 43908036 43908143 -98363301 - LTR27 LTR ERV1 -1 635 525 2606 208 125 81 chr9 43908145 43909092 -98362352 - LTR28 LTR ERV1 -32 988 1 188 33 0 33 chr9 43909150 43909180 -98362264 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 443 282 135 12 chr9 43909223 43909393 -98362051 - MIR SINE MIR 0 262 72 1901 210 59 0 chr9 43910030 43910421 -98361023 + L1MC4 LINE L1 7258 7671 -371 530 251 73 17 chr9 43910423 43910602 -98360842 + L1MC4 LINE L1 7714 7902 -140 31 26 0 0 chr9 43910762 43910800 -98360644 + AT_rich Low_complexity Low_complexity 1 38 0 2353 109 0 0 chr9 43910835 43911147 -98360297 - AluSx SINE Alu 0 312 1 1629 169 38 0 chr9 43911294 43911561 -98359883 - AluJo SINE Alu -17 295 19 1857 142 129 3 chr9 43911563 43911895 -98359549 + MER57A LTR ERV1 5 378 -25 2962 216 61 26 chr9 43911895 43912682 -98358762 + L1M4 LINE L1 4316 5074 -1072 397 158 0 13 chr9 43912682 43912758 -98358686 + L1MA7 LINE L1 6210 6284 -7 2962 216 61 26 chr9 43912758 43912781 -98358663 + L1M4 LINE L1 5074 5095 -1051 2065 131 0 0 chr9 43912781 43913071 -98358373 - AluSx SINE Alu -22 290 1 2962 216 61 26 chr9 43913071 43913146 -98358298 + L1M4 LINE L1 5095 5233 -913 787 200 65 0 chr9 43913246 43913474 -98357970 + L1M4 LINE L1 5197 5437 -741 1185 99 0 163 chr9 43913478 43913699 -98357745 + AluSq SINE Alu 1 185 -128 2374 82 0 0 chr9 43914465 43914757 -98356687 - AluSg SINE Alu -18 292 1 33 56 0 0 chr9 43914912 43914966 -98356478 + AT_rich Low_complexity Low_complexity 1 54 0 593 274 116 88 chr9 43915181 43915637 -98355807 + L2 LINE L2 2845 3313 0 372 217 0 0 chr9 43916337 43916429 -98355015 + GA-rich Low_complexity Low_complexity 4 95 0 1773 127 65 10 chr9 43916546 43916838 -98354606 - AluSx SINE Alu -4 308 1 2562 47 0 3 chr9 43916886 43917187 -98354257 - AluY SINE Alu -11 300 1 2306 59 6 56 chr9 43918189 43918510 -98352934 - AluY SINE Alu -6 305 1 407 272 64 16 chr9 43918514 43918639 -98352805 + MER58B DNA MER1_type 197 327 -14 4106 138 56 44 chr9 43918708 43919314 -98352130 + LTR39 LTR ERV1 1 620 -163 2412 46 0 0 chr9 43919314 43919617 -98351827 + AluY SINE Alu 1 303 0 4106 138 56 44 chr9 43919617 43919765 -98351679 + LTR39 LTR ERV1 620 765 -18 290 192 0 0 chr9 43919784 43919836 -98351608 + MER5A DNA MER1_type 23 74 -115 2151 120 3 16 chr9 43919838 43920154 -98351290 + AluSq SINE Alu 1 312 -1 830 66 10 0 chr9 43920166 43920301 -98351143 + LTR12 LTR ERV1 1 251 -463 261 304 32 16 chr9 43920301 43920426 -98351018 + LTR30 LTR ERV1 517 643 -79 1261 113 148 0 chr9 43920428 43920631 -98350813 + LTR12 LTR ERV1 482 714 0 196 174 65 0 chr9 43921040 43921086 -98350358 + MIR SINE MIR 96 144 -118 2111 138 0 3 chr9 43921262 43921574 -98349870 - AluSx SINE Alu 0 312 2 763 196 7 20 chr9 43922045 43922198 -98349246 + L1M3e LINE L1 1 151 -6879 302 262 66 0 chr9 43922197 43922319 -98349125 + L1M3e LINE L1 1355 1484 -5546 * 242 200 0 0 chr9 43922427 43922467 -98348977 - LTR40a LTR ERVL -474 45 6 1135 95 0 0 chr9 43922944 43923091 -98348353 - AluSq SINE Alu -15 298 152 2222 115 0 0 chr9 43923104 43923408 -98348036 - AluSx SINE Alu -4 308 5 2329 82 10 3 chr9 43923435 43923729 -98347715 - AluY SINE Alu -14 297 2 2486 82 0 0 chr9 43923755 43924061 -98347383 - AluY SINE Alu -5 306 1 227 62 250 0 chr9 43925871 43925919 -98345525 - AluSc SINE Alu -2 297 238 1565 74 69 0 chr9 43926025 43926227 -98345217 + AluSq SINE Alu 1 216 -97 192 311 27 40 chr9 43926302 43926376 -98345068 + MER5A DNA MER1_type 117 189 0 201 224 112 41 chr9 43927343 43927441 -98344003 + L2 LINE L2 1628 1732 -1582 2155 123 7 0 chr9 43927777 43928077 -98343367 + AluSx SINE Alu 1 302 -10 21 0 0 0 chr9 43928356 43928377 -98343067 + AT_rich Low_complexity Low_complexity 1 21 0 29 78 0 0 chr9 43928848 43928912 -98342532 + AT_rich Low_complexity Low_complexity 1 64 0 2268 115 0 0 chr9 43929089 43929394 -98342050 - AluSx SINE Alu -7 305 1 371 223 34 126 chr9 43929567 43929805 -98341639 + L2 LINE L2 3098 3313 0 2332 59 0 16 chr9 43930309 43930616 -98340828 + AluY SINE Alu 1 302 -9 2031 131 10 0 chr9 43932003 43932328 -98339116 - AluSx SINE Alu 0 312 1 1841 157 17 0 chr9 43932887 43933180 -98338264 + AluSx SINE Alu 1 298 -14 2329 62 0 10 chr9 43934247 43934564 -98336880 - AluY SINE Alu 0 311 1 22 0 0 0 chr9 43934634 43934656 -98336788 + AT_rich Low_complexity Low_complexity 1 22 0 1340 98 5 5 chr9 43934756 43934949 -98336495 + AluY SINE Alu 112 304 -7 1981 159 3 0 chr9 43935026 43935334 -98336110 - AluSx SINE Alu -3 309 1 535 213 94 8 chr9 43935546 43935673 -98335771 + MER39 LTR ERV1 1 138 -569 * 2230 153 26 48 chr9 43935645 43935789 -98335655 + MER39 LTR ERV1 260 406 -301 4443 132 18 40 chr9 43935789 43936495 -98334949 + LTR8 LTR ERV1 1 691 0 2230 153 26 48 chr9 43936495 43936806 -98334638 + MER39 LTR ERV1 406 705 -2 1966 126 23 23 chr9 43937420 43937722 -98333722 - AluSq SINE Alu -11 302 1 2493 33 3 13 chr9 43938023 43938324 -98333120 - AluY SINE Alu -13 298 1 2287 131 51 22 chr9 43938689 43939133 -98332311 + LTR56 LTR ERV1 10 437 0 189 0 0 0 chr9 43940809 43940830 -98330614 + (TG)n Simple_repeat Simple_repeat 1 21 0 281 236 0 0 chr9 43941988 43942043 -98329401 - MIR3 SINE MIR -46 162 108 246 62 0 0 chr9 43942314 43942346 -98329098 + (TG)n Simple_repeat Simple_repeat 2 33 0 1490 195 28 83 chr9 43943649 43943694 -98327750 + MLT1B LTR MaLR 1 47 -343 2147 134 0 6 chr9 43943694 43944008 -98327436 - AluSx SINE Alu 0 312 1 1490 195 28 83 chr9 43944008 43944390 -98327054 + MLT1B LTR MaLR 47 390 0 463 221 29 43 chr9 43944414 43944554 -98326890 + MIR SINE MIR 125 262 0 24 32 0 0 chr9 43944879 43944910 -98326534 + AT_rich Low_complexity Low_complexity 1 31 0 799 171 16 0 chr9 43945160 43945289 -98326155 - FLAM_C SINE Alu -2 131 1 341 345 85 20 chr9 43945444 43945644 -98325800 + MIR SINE MIR 13 225 -37 2237 98 0 16 chr9 43946385 43946701 -98324743 + AluSx SINE Alu 1 311 -1 1363 200 54 11 chr9 43946841 43947121 -98324323 - AluJb SINE Alu -20 292 1 315 49 0 0 chr9 43947515 43947556 -98323888 + (CA)n Simple_repeat Simple_repeat 2 42 0 1625 154 51 73 chr9 43947556 43947608 -98323836 - MER47A DNA MER2_type -1959 364 312 4439 79 5 16 chr9 43947608 43947783 -98323661 - MER41A LTR ERV1 0 554 379 2246 110 0 0 chr9 43947783 43948082 -98323362 - AluSg SINE Alu -11 299 1 4439 79 5 16 chr9 43948082 43948466 -98322978 - MER41A LTR ERV1 -175 379 1 1625 154 51 73 chr9 43948466 43948784 -98322660 - MER47A DNA MER2_type -2011 312 2 906 242 126 53 chr9 43948794 43949190 -98322254 - MLT2B1 LTR ERVL -76 444 20 30 69 0 0 chr9 43949217 43949275 -98322169 + AT_rich Low_complexity Low_complexity 1 58 0 31 44 0 0 chr9 43949830 43949875 -98321569 + AT_rich Low_complexity Low_complexity 1 45 0 2151 122 7 0 chr9 43950319 43950615 -98320829 + AluSq SINE Alu 1 298 -15 286 237 0 0 chr9 43951096 43951155 -98320289 - MER82 DNA MER2_type -2 651 593 2418 236 47 11 chr9 43951155 43951705 -98319739 - MER82 DNA MER2_type -25 628 59 732 204 23 136 chr9 43951705 43951850 -98319594 + LTR48 LTR ERV1 1 104 -683 2208 149 27 43 chr9 43951850 43952220 -98319224 - THE1B LTR MaLR 0 364 1 732 204 23 136 chr9 43952220 43952339 -98319105 + LTR48 LTR ERV1 104 235 -552 2360 107 0 7 chr9 43952395 43952705 -98318739 - AluSg SINE Alu -2 308 1 2405 69 0 10 chr9 43952707 43953010 -98318434 - AluY SINE Alu -11 300 1 2491 168 68 50 chr9 43953010 43953569 -98317875 + LTR48 LTR ERV1 219 787 0 357 197 0 0 chr9 43953570 43953631 -98317813 - MER82 DNA MER2_type -592 61 1 706 240 77 5 chr9 43953832 43954028 -98317416 + MER58C DNA MER1_type 5 214 -1 1958 187 62 17 chr9 43954060 43954478 -98316966 - MER67C LTR ERV1 0 710 274 3268 132 14 51 chr9 43954514 43954987 -98316457 - MER4B LTR ERV1 -39 571 123 2393 133 15 3 chr9 43954987 43955326 -98316118 - MER61A LTR ERV1 0 343 1 3268 132 14 51 chr9 43955326 43955445 -98315999 - MER4B LTR ERV1 -487 123 1 782 248 56 56 chr9 43955452 43955722 -98315722 - MER67C LTR ERV1 -440 270 1 261 267 60 64 chr9 43956099 43956251 -98315193 - MIR3 SINE MIR -36 172 3 266 239 0 15 chr9 43956440 43956507 -98314937 - MER92C LTR ERV1 -2 552 487 1075 205 10 0 chr9 43956563 43956758 -98314686 - MER92C LTR ERV1 -170 384 188 2508 83 0 3 chr9 43956871 43957183 -98314261 + AluY SINE Alu 1 311 0 206 200 60 40 chr9 43957608 43957658 -98313786 + L2 LINE L2 2746 2796 -518 189 319 14 14 chr9 43957859 43957931 -98313513 - L2 LINE L2 -8 3264 3193 1438 179 8 19 chr9 43958879 43959136 -98312308 - L1PA16 LINE L1 -9 6157 5904 4324 166 61 24 chr9 43959409 43960371 -98311073 + L1MB1 LINE L1 5160 6163 -5 264 77 0 0 chr9 43961204 43961243 -98310201 + (TC)n Simple_repeat Simple_repeat 2 40 0 257 0 30 0 chr9 43961243 43961276 -98310168 + (CA)n Simple_repeat Simple_repeat 1 34 0 1682 168 77 12 chr9 43962374 43962967 -98308477 + MER39 LTR ERV1 1 706 -1 2523 32 0 0 chr9 43963118 43963449 -98307995 + AluY SINE Alu 1 331 0 235 298 43 62 chr9 43963561 43963722 -98307722 - L1 LINE L1 -2445 3701 3544 2274 88 0 7 chr9 43963941 43964278 -98307166 - AluSq SINE Alu 0 313 1 24 53 0 0 chr9 43966504 43966542 -98304902 + AT_rich Low_complexity Low_complexity 1 38 0 3002 64 0 3 chr9 43966855 43967231 -98304213 - THE1C-int LTR MaLR -1205 375 1 1346 151 70 126 chr9 43967231 43967458 -98303986 - THE1C LTR MaLR 0 375 178 1600 92 9 5 chr9 43967458 43967675 -98303769 - L1PA8 LINE L1 -5 6167 5950 1346 151 70 126 chr9 43967675 43967844 -98303600 - THE1C LTR MaLR -197 178 1 449 209 75 67 chr9 43968007 43968141 -98303303 - MLT1E1 LTR MaLR 0 654 520 1621 203 90 123 chr9 43968220 43968327 -98303117 - MLT1E2 LTR MaLR 0 626 517 2414 102 0 0 chr9 43968327 43968640 -98302804 + AluSq SINE Alu 1 313 0 1621 203 90 123 chr9 43968640 43969177 -98302267 - MLT1E2 LTR MaLR -109 517 1 589 155 146 0 chr9 43970668 43970771 -98300673 - THE1B LTR MaLR -226 138 21 431 311 161 31 chr9 43971610 43971896 -98299548 - L2 LINE L2 -38 3234 2912 2527 62 0 3 chr9 43971948 43972257 -98299187 + AluY SINE Alu 1 308 -3 287 335 124 54 chr9 43972983 43973323 -98298121 - L2 LINE L2 -597 2717 2337 1749 99 39 46 chr9 43973323 43973605 -98297839 + AluSx SINE Alu 18 297 -15 287 335 124 54 chr9 43973605 43973709 -98297735 - L2 LINE L2 -977 2337 2242 2059 100 0 24 chr9 43974050 43974339 -98297105 - AluY SINE Alu -29 282 1 302 280 152 24 chr9 43974407 43974532 -98296912 + MIR SINE MIR 1 141 -121 301 308 25 66 chr9 43974724 43975010 -98296434 - L1MC4a LINE L1 -1899 5909 5636 26 0 0 0 chr9 43975210 43975236 -98296208 + AT_rich Low_complexity Low_complexity 1 26 0 2032 120 0 3 chr9 43975824 43976133 -98295311 + AluSx SINE Alu 1 308 0 1966 128 0 42 chr9 43976947 43977119 -98294325 - AluSx SINE Alu -17 295 140 2401 80 0 10 chr9 43977119 43977430 -98294014 - AluY SINE Alu -3 308 1 1966 128 0 42 chr9 43977430 43977563 -98293881 - AluSx SINE Alu -172 140 3 1059 241 121 69 chr9 43978465 43979058 -98292386 - MLT1E3 LTR MaLR 0 624 1 545 294 43 47 chr9 43980206 43980474 -98290970 + MLT1G LTR MaLR 144 425 -170 2264 76 22 0 chr9 43980678 43980979 -98290465 - AluY SINE Alu 0 308 2 253 388 39 8 chr9 43980987 43981116 -98290328 - MIR3 SINE MIR -33 175 43 614 291 133 5 chr9 43981660 43981863 -98289581 + MIR SINE MIR 4 232 -30 2470 58 0 16 chr9 43982052 43982360 -98289084 + AluY SINE Alu 1 303 -8 2363 67 0 17 chr9 43982645 43982942 -98288502 - AluY SINE Alu -19 292 1 313 188 14 0 chr9 43982965 43983034 -98288410 - Alu SINE Alu -5 295 226 2203 100 7 0 chr9 43983564 43983855 -98287589 + AluSq SINE Alu 1 293 -20 896 96 0 0 chr9 43984026 43984180 -98287264 - AluY SINE Alu 0 311 175 231 263 38 25 chr9 43984305 43984385 -98287059 - MER94 DNA DNA -53 81 1 659 203 38 0 chr9 43984724 43984882 -98286562 + MER96B DNA MER1_type? 241 404 -13 1872 117 0 0 chr9 43985095 43985344 -98286100 - AluSx SINE Alu -20 292 44 2311 190 27 5 chr9 43985371 43985592 -98285852 - MSTB LTR MaLR 0 426 189 1774 149 3 3 chr9 43985592 43985914 -98285530 - AluSx SINE Alu 0 322 1 2311 190 27 5 chr9 43985914 43986101 -98285343 - MSTB LTR MaLR -237 189 8 207 0 0 0 chr9 43986101 43986124 -98285320 + (TA)n Simple_repeat Simple_repeat 2 24 0 2564 49 3 3 chr9 43986124 43986431 -98285013 - AluY SINE Alu -4 307 1 2480 66 3 0 chr9 43986904 43987207 -98284237 - AluY SINE Alu -7 304 1 503 274 18 53 chr9 43987498 43987779 -98283665 + L1ME3 LINE L1 5678 5948 -214 2414 81 3 7 chr9 43987780 43988087 -98283357 + AluY SINE Alu 1 306 -5 22 35 0 0 chr9 43988577 43988606 -98282838 + AT_rich Low_complexity Low_complexity 1 29 0 335 310 84 0 chr9 43988874 43989016 -98282428 - MLT1I LTR MaLR -243 166 13 2427 68 0 3 chr9 43989456 43989763 -98281681 + AluY SINE Alu 1 306 -5 315 237 144 50 chr9 43991080 43991219 -98280225 - Charlie8 DNA MER1_type -2236 181 30 2464 167 24 19 chr9 43991402 43991828 -98279616 - MSTB1 LTR MaLR 0 432 5 1694 170 66 0 chr9 43992104 43992393 -98279051 - AluJb SINE Alu -4 308 1 943 196 75 8 chr9 43992408 43992673 -98278771 - LTR54B LTR ERV1 -4 494 212 339 175 0 0 chr9 43992690 43992747 -98278697 - MER57-int LTR ERV1 -232 7305 7249 936 262 124 17 chr9 43993837 43994227 -98277217 + MER110A LTR ERV1 1 439 -29 1812 202 54 42 chr9 43994227 43994726 -98276718 - MLT1D LTR MaLR 0 505 1 936 262 124 17 chr9 43994726 43994747 -98276697 + MER110A LTR ERV1 439 456 -12 2215 117 0 3 chr9 43994751 43995050 -98276394 + AluSq SINE Alu 1 298 -15 307 220 0 0 chr9 43995531 43995590 -98275854 - MER82 DNA MER2_type -2 651 593 2525 236 48 2 chr9 43995590 43996135 -98275309 - MER82 DNA MER2_type -25 628 59 707 208 19 138 chr9 43996135 43996280 -98275164 + LTR48 LTR ERV1 1 103 -684 2207 149 27 43 chr9 43996280 43996650 -98274794 - THE1B LTR MaLR 0 364 1 707 208 19 138 chr9 43996650 43996764 -98274680 + LTR48 LTR ERV1 103 229 -558 207 0 0 0 chr9 43996767 43996790 -98274654 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2402 97 0 7 chr9 43996829 43997139 -98274305 - AluSg SINE Alu -2 308 1 2412 69 0 10 chr9 43997141 43997447 -98273997 - AluY SINE Alu -8 303 1 2545 161 68 50 chr9 43997447 43998006 -98273438 + LTR48 LTR ERV1 219 787 0 357 197 0 0 chr9 43998007 43998068 -98273376 - MER82 DNA MER2_type -592 61 1 687 237 88 10 chr9 43998269 43998463 -98272981 + MER58C DNA MER1_type 6 214 -1 1911 194 62 17 chr9 43998506 43998924 -98272520 - MER67C LTR ERV1 0 710 274 3242 136 12 50 chr9 43998960 43999434 -98272010 - MER4B LTR ERV1 -39 571 123 2376 135 15 6 chr9 43999434 43999774 -98271670 - MER61A LTR ERV1 0 343 1 3242 136 12 50 chr9 43999774 43999893 -98271551 - MER4B LTR ERV1 -487 123 1 765 252 56 56 chr9 43999900 44000170 -98271274 - MER67C LTR ERV1 -440 270 1 277 255 64 64 chr9 44000547 44000699 -98270745 - MIR3 SINE MIR -36 172 3 297 197 13 40 chr9 44000888 44000964 -98270480 - MER92C LTR ERV1 -2 552 479 1018 215 10 0 chr9 44001011 44001206 -98270238 - MER92C LTR ERV1 -170 384 188 2545 72 0 3 chr9 44001319 44001625 -98269819 + AluY SINE Alu 1 305 -6 185 220 60 40 chr9 44002065 44002115 -98269329 + L2 LINE L2 2746 2796 -518 215 315 90 0 chr9 44002316 44002405 -98269039 - L2 LINE L2 -8 3305 3209 1470 164 8 20 chr9 44003341 44003591 -98267853 - L1PA16 LINE L1 -16 6150 5904 4310 166 61 15 chr9 44003864 44004824 -98266620 + L1MB1 LINE L1 5160 6163 -5 291 28 0 0 chr9 44005656 44005692 -98265752 + (TC)n Simple_repeat Simple_repeat 1 36 0 288 0 0 0 chr9 44005691 44005723 -98265721 + (CA)n Simple_repeat Simple_repeat 1 32 0 * 1689 163 77 12 chr9 44006823 44007416 -98264028 + MER39 LTR ERV1 1 706 -1 410 321 90 58 chr9 44007629 44008040 -98263404 - L1M4 LINE L1 -2399 3747 3324 2189 109 6 3 chr9 44008050 44008388 -98263056 - AluSq SINE Alu 0 313 1 22 0 0 0 chr9 44010629 44010651 -98260793 + AT_rich Low_complexity Low_complexity 1 22 0 3026 64 0 0 chr9 44010966 44011341 -98260103 - THE1B-int LTR MaLR -1205 375 1 2005 101 49 111 chr9 44011341 44011558 -98259886 - THE1B LTR MaLR 0 364 135 192 40 0 0 chr9 44011558 44011583 -98259861 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1524 92 10 10 chr9 44011583 44011790 -98259654 - L1PA8 LINE L1 -16 6156 5950 2005 101 49 111 chr9 44011790 44011959 -98259485 - THE1B LTR MaLR -227 137 1 462 209 75 67 chr9 44012122 44012256 -98259188 - MLT1E1 LTR MaLR 0 654 520 1532 194 101 100 chr9 44012335 44012442 -98259002 - MLT1E2 LTR MaLR 0 626 521 2475 96 0 0 chr9 44012442 44012754 -98258690 + AluSq SINE Alu 1 312 -1 1532 194 101 100 chr9 44012754 44013302 -98258142 - MLT1E2 LTR MaLR -105 521 1 2282 60 10 3 chr9 44014222 44014520 -98256924 - AluY SINE Alu -11 300 1 22 0 0 0 chr9 44014668 44014690 -98256754 + AT_rich Low_complexity Low_complexity 1 22 0 2834 0 0 10 chr9 44014888 44015195 -98256249 + AluYa5 SINE Alu 1 304 -7 616 155 140 17 chr9 44015412 44015544 -98255900 - THE1B LTR MaLR -226 138 7 301 316 176 34 chr9 44016354 44016688 -98254756 - L2 LINE L2 -38 3234 2844 2633 48 0 3 chr9 44016688 44017000 -98254444 + AluY SINE Alu 1 311 0 301 316 176 34 chr9 44017000 44017022 -98254422 - L2 LINE L2 -428 2844 2827 266 345 108 62 chr9 44017726 44018072 -98253372 - L2 LINE L2 -597 2717 2388 1697 84 4 65 chr9 44018072 44018334 -98253110 + AluSx SINE Alu 18 263 -49 219 69 0 0 chr9 44018342 44018371 -98253073 + (CAAA)n Simple_repeat Simple_repeat 1 29 0 266 345 108 62 chr9 44018371 44018470 -98252974 - L2 LINE L2 -932 2382 2242 1999 109 0 41 chr9 44018814 44019108 -98252336 - AluY SINE Alu -29 282 1 359 248 152 24 chr9 44019176 44019301 -98252143 + MIR SINE MIR 1 141 -121 316 304 25 66 chr9 44019492 44019778 -98251666 - L1MC4a LINE L1 -1899 5909 5636 26 0 0 0 chr9 44019979 44020005 -98251439 + AT_rich Low_complexity Low_complexity 1 26 0 2062 117 0 3 chr9 44020593 44020902 -98250542 + AluSx SINE Alu 1 308 0 2020 125 0 39 chr9 44021716 44021887 -98249557 - AluSx SINE Alu -17 295 140 2423 75 0 10 chr9 44021887 44022195 -98249249 - AluY SINE Alu -6 305 1 2020 125 0 39 chr9 44022195 44022328 -98249116 - AluSx SINE Alu -172 140 3 1201 216 179 76 chr9 44023225 44023818 -98247626 - MLT1E1 LTR MaLR 0 654 1 21 36 0 0 chr9 44024665 44024693 -98246751 + AT_rich Low_complexity Low_complexity 1 28 0 265 264 0 0 chr9 44024967 44025020 -98246424 + MLT1H1 LTR MaLR 142 194 -361 2295 62 22 0 chr9 44025274 44025575 -98245869 - AluY SINE Alu 0 308 2 252 395 31 8 chr9 44025583 44025712 -98245732 - MIR3 SINE MIR -33 175 44 591 296 133 5 chr9 44026256 44026459 -98244985 + MIR SINE MIR 4 232 -30 2365 65 0 36 chr9 44026927 44027234 -98244210 - AluY SINE Alu -15 296 1 2409 70 3 0 chr9 44027256 44027554 -98243890 - AluY SINE Alu -12 299 1 444 267 50 77 chr9 44028745 44029023 -98242421 - MER77 LTR ERV1 -7 598 291 1558 109 0 5 chr9 44029023 44029243 -98242201 + AluSq SINE Alu 83 301 -12 444 267 50 77 chr9 44029243 44029300 -98242144 - MER77 LTR ERV1 -314 291 234 334 294 114 20 chr9 44029533 44029734 -98241710 - L1MC4a LINE L1 -1895 5913 5694 2073 113 23 0 chr9 44029798 44030099 -98241345 + AluSg SINE Alu 1 308 -2 200 235 88 29 chr9 44030397 44030465 -98240979 + MIR SINE MIR 46 117 -145 2069 114 0 13 chr9 44031336 44031634 -98239810 - AluSx SINE Alu -18 294 1 4350 159 51 42 chr9 44032143 44032951 -98238493 - L1PB4 LINE L1 0 6156 5313 1621 147 25 53 chr9 44032951 44033271 -98238173 - AluSx SINE Alu -1 311 1 4350 159 51 42 chr9 44033271 44033632 -98237812 - L1PB4 LINE L1 -843 5313 4957 2038 166 86 10 chr9 44033633 44034039 -98237405 - LTR12 LTR ERV1 -234 1523 55 258 231 0 0 chr9 44034063 44034115 -98237329 - LTR30 LTR ERV1 -670 52 1 326 186 17 0 chr9 44034122 44034181 -98237263 - L1PB4 LINE L1 -1193 4953 4894 * 1810 176 34 21 chr9 44034177 44034557 -98236887 - L1PB4 LINE L1 -2218 3928 3544 479 327 76 19 chr9 44085030 44085241 -98186203 + MIR SINE MIR 15 237 -25 553 302 34 15 chr9 44085274 44085479 -98185965 + MLT1K LTR MaLR 373 581 -7 378 367 28 17 chr9 44085490 44085667 -98185777 - MER5A DNA MER1_type -10 179 1 848 183 11 5 chr9 44085827 44086013 -98185431 - L1MA6 LINE L1 -2 6298 6112 454 184 184 0 chr9 44087742 44087856 -98183588 - MER58C DNA MER1_type 0 215 81 2460 68 0 10 chr9 44087860 44088170 -98183274 + AluY SINE Alu 1 307 -4 23 78 0 0 chr9 44088326 44088377 -98183067 + AT_rich Low_complexity Low_complexity 1 51 0 2099 110 0 32 chr9 44089260 44089568 -98181876 - AluY SINE Alu -13 298 1 2041 141 10 0 chr9 44090164 44090469 -98180975 - AluSx SINE Alu -4 308 1 1469 163 47 60 chr9 44092960 44093260 -98178184 + AluJb SINE Alu 1 296 -16 2270 79 0 30 chr9 44093947 44094251 -98177193 - AluY SINE Alu -16 295 1 996 171 14 28 chr9 44095048 44095265 -98176179 + L1MA9 LINE L1 6074 6287 -25 931 191 95 19 chr9 44095434 44095644 -98175800 - MLT1B LTR MaLR -164 226 1 240 143 57 0 chr9 44095952 44096022 -98175422 + (TA)n Simple_repeat Simple_repeat 2 75 0 1289 117 0 44 chr9 44096031 44096236 -98175208 - AluSq SINE Alu -109 204 9 198 0 0 0 chr9 44096304 44096326 -98175118 + (T)n Simple_repeat Simple_repeat 1 22 0 1729 215 136 34 chr9 44096393 44096952 -98174492 - MLT1E2 LTR MaLR 0 626 11 6959 180 34 2 chr9 44097042 44098128 -98173316 + L1PA15 LINE L1 3933 4983 -1182 1508 160 82 25 chr9 44098128 44098247 -98173197 + AluJo SINE Alu 2 113 -199 375 23 0 0 chr9 44098247 44098291 -98173153 + (TAA)n Simple_repeat Simple_repeat 2 45 0 1508 160 82 25 chr9 44098291 44098452 -98172992 + AluJo SINE Alu 113 298 -14 6959 180 34 2 chr9 44098452 44099580 -98171864 + L1PA15 LINE L1 4983 6164 -1 2356 83 0 6 chr9 44100137 44100450 -98170994 + AluY SINE Alu 1 311 0 756 259 123 50 chr9 44100528 44100868 -98170576 - MER93a LTR ERV1 -3 399 35 1389 179 87 33 chr9 44101552 44101887 -98169557 - MLT1A1 LTR MaLR -2 363 11 961 215 127 4 chr9 44103225 44103485 -98167959 + LTR37A LTR ERV1 78 369 -57 23 33 0 0 chr9 44103496 44103526 -98167918 + AT_rich Low_complexity Low_complexity 1 30 0 1949 141 3 3 chr9 44103549 44103857 -98167587 + AluSx SINE Alu 2 309 0 810 171 190 96 chr9 44104522 44104608 -98166836 + LTR37A LTR ERV1 18 95 -331 2471 71 0 7 chr9 44104608 44104918 -98166526 - AluY SINE Alu -3 308 1 810 171 190 96 chr9 44104918 44105205 -98166239 + LTR37A LTR ERV1 95 426 0 603 178 212 42 chr9 44105772 44105939 -98165505 + LTR37A LTR ERV1 111 248 -178 2270 185 144 22 chr9 44105939 44106069 -98165375 + MER67C LTR ERV1 1 114 -596 216 0 0 0 chr9 44106069 44106093 -98165351 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 2270 185 144 22 chr9 44106093 44106595 -98164849 + MER67C LTR ERV1 114 710 0 603 178 212 42 chr9 44106595 44106686 -98164758 + LTR37A LTR ERV1 248 413 -13 226 291 55 36 chr9 44107370 44107480 -98163964 - MIR SINE MIR -119 143 32 281 273 13 0 chr9 44108510 44108587 -98162857 - L2 LINE L2 -9 3263 3186 599 164 37 8 chr9 44108637 44108771 -98162673 + LTR37B LTR ERV1 331 468 0 235 294 80 29 chr9 44109012 44109250 -98162194 - L1M4 LINE L1 -1174 4972 4723 591 231 100 6 chr9 44109484 44109644 -98161800 + MER5B DNA MER1_type 2 176 -2 2079 137 16 0 chr9 44111531 44111838 -98159606 + AluSx SINE Alu 1 312 0 2243 87 14 0 chr9 44111841 44112128 -98159316 + AluY SINE Alu 20 310 -1 2314 104 0 0 chr9 44112130 44112437 -98159007 + AluSq SINE Alu 1 307 -6 436 224 68 41 chr9 44112986 44113133 -98158311 - MER58A DNA MER1_type -29 195 45 328 333 0 0 chr9 44114584 44114686 -98156758 - MER94 DNA DNA -32 102 1 1893 155 111 17 chr9 44115578 44115900 -98155544 + MLT2D LTR ERVL 17 378 -36 369 75 0 0 chr9 44115900 44115953 -98155491 + (CA)n Simple_repeat Simple_repeat 2 54 0 1893 155 111 17 chr9 44115953 44115992 -98155452 + MLT2D LTR ERVL 378 412 -2 21 36 0 0 chr9 44116192 44116220 -98155224 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr9 44116304 44116327 -98155117 + AT_rich Low_complexity Low_complexity 1 23 0 1284 180 141 0 chr9 44117539 44117794 -98153650 + AluJb SINE Alu 1 291 -11 618 264 111 32 chr9 44118243 44118459 -98152985 + MIR SINE MIR 30 262 0 189 227 23 0 chr9 44118942 44118986 -98152458 - L2 LINE L2 -2 3270 3226 1767 168 3 10 chr9 44119261 44119559 -98151885 - AluJo SINE Alu -16 296 1 276 315 118 8 chr9 44119850 44119977 -98151467 + MER5A DNA MER1_type 43 183 -6 1882 141 21 7 chr9 44120055 44120346 -98151098 + AluSx SINE Alu 6 300 -12 2720 206 73 30 chr9 44120379 44121115 -98150329 - L1ME1 LINE L1 -3 6163 5396 238 176 88 29 chr9 44121148 44121216 -98150228 - L1M4 LINE L1 -1556 4590 4519 204 259 0 37 chr9 44121365 44121419 -98150025 + CT-rich Low_complexity Low_complexity 5 56 0 33 46 0 15 chr9 44121539 44121565 -98149879 + AT_rich Low_complexity Low_complexity 1 26 -38 1746 158 42 3 chr9 44121565 44121850 -98149594 - AluJb SINE Alu -16 296 1 33 46 0 15 chr9 44121850 44121888 -98149556 + AT_rich Low_complexity Low_complexity 26 64 0 703 297 44 53 chr9 44122774 44123497 -98147947 + L1MEc LINE L1 1022 1738 -4658 729 275 86 19 chr9 44123767 44124233 -98147211 + L1MEc LINE L1 2104 2558 -3657 362 169 28 0 chr9 44124731 44124802 -98146642 + MER116 DNA Mariner 5 77 -3 648 348 112 16 chr9 44126055 44126861 -98144583 - L2 LINE L2 0 3313 2427 218 368 28 9 chr9 44127018 44127124 -98144320 - L2 LINE L2 -606 2708 2601 1483 164 74 0 chr9 44127726 44127995 -98143449 + 7SLRNA srpRNA srpRNA 24 312 -8 183 100 0 0 chr9 44127996 44128026 -98143418 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 181 367 0 0 chr9 44129453 44129502 -98141942 - L2 LINE L2 -20 3293 3245 308 280 28 9 chr9 44130292 44130399 -98141045 - MIR3 SINE MIR 0 208 100 2401 73 0 3 chr9 44130886 44131186 -98140258 + AluY SINE Alu 7 305 -6 1995 160 0 3 chr9 44131399 44131706 -98139738 - AluSx SINE Alu -6 306 1 24 32 0 0 chr9 44132546 44132577 -98138867 + AT_rich Low_complexity Low_complexity 1 31 0 202 318 220 8 chr9 44133114 44133246 -98138198 + MIR SINE MIR 53 212 -50 198 297 14 54 chr9 44133894 44133968 -98137476 - MIR SINE MIR -17 245 175 252 260 48 68 chr9 44134123 44134269 -98137175 + MIR SINE MIR 42 184 -78 273 336 49 7 chr9 44135108 44135251 -98136193 + MIR SINE MIR 22 170 -92 269 322 89 0 chr9 44135727 44135817 -98135627 + MIR SINE MIR 30 127 -81 2140 114 0 32 chr9 44135847 44136155 -98135289 + AluSx SINE Alu 1 298 -14 29 0 0 0 chr9 44136405 44136434 -98135010 + AT_rich Low_complexity Low_complexity 1 29 0 3796 154 39 22 chr9 44138189 44138904 -98132540 + LTR8A LTR ERV1 1 727 0 372 271 21 42 chr9 44138914 44139058 -98132386 - HERVS71 LTR ERV1 -3911 5067 4927 2118 142 72 4 chr9 44139151 44139758 -98131686 + MER50 LTR ERV1 12 711 -23 206 255 0 0 chr9 44141011 44141062 -98130382 + A-rich Low_complexity Low_complexity 1 51 0 1973 91 34 20 chr9 44142653 44142949 -98128495 + AluY SINE Alu 1 300 -11 441 268 54 0 chr9 44144339 44144451 -98126993 - MER8 DNA MER2_type -121 118 1 22 0 0 0 chr9 44145147 44145169 -98126275 + AT_rich Low_complexity Low_complexity 1 22 0 2239 114 0 0 chr9 44145764 44146061 -98125383 - AluSg SINE Alu -12 298 2 2470 68 3 7 chr9 44146094 44146404 -98125040 + AluY SINE Alu 1 309 -2 490 88 11 11 chr9 44146964 44147055 -98124389 + (GA)n Simple_repeat Simple_repeat 2 92 0 184 267 100 0 chr9 44147949 44148009 -98123435 + MIR SINE MIR 178 243 -19 1414 207 99 14 chr9 44148905 44149258 -98122186 - MLT1B LTR MaLR -4 386 4 268 119 45 0 chr9 44150357 44150424 -98121020 + (TCTA)n Simple_repeat Simple_repeat 4 73 0 281 346 33 25 chr9 44150683 44150979 -98120465 + L2 LINE L2 2791 3090 -223 213 214 0 0 chr9 44151079 44151121 -98120323 + L2 LINE L2 3241 3282 -31 196 239 104 0 chr9 44151433 44151500 -98119944 - MIR SINE MIR -83 179 106 204 338 14 14 chr9 44151557 44151631 -98119813 - MIR SINE MIR -105 103 30 454 204 259 27 chr9 44151655 44151840 -98119604 + MIR SINE MIR 40 262 0 1348 199 10 70 chr9 44151859 44152097 -98119347 - AluJo SINE Alu -15 297 79 1723 104 0 0 chr9 44152097 44152327 -98119117 + AluSg/x SINE Alu 72 301 -9 1348 199 10 70 chr9 44152327 44152389 -98119055 - AluJo SINE Alu -233 79 15 35755 62 10 6 chr9 44152663 44153436 -98118008 + L1PA5 LINE L1 405 1174 -4980 318 23 0 0 chr9 44153436 44153480 -98117964 + L1PA2 LINE L1 6110 6153 -2 35755 62 10 6 chr9 44153480 44158430 -98113014 + L1PA5 LINE L1 1174 6148 -6 1494 192 45 24 chr9 44158618 44158951 -98112493 - MER2 DNA MER2_type -4 340 1 2285 104 13 0 chr9 44159345 44159653 -98111791 - AluSq SINE Alu -1 312 1 2778 182 10 11 chr9 44160015 44160536 -98110908 + MER44D DNA MER2_type 1 575 -30 436 134 268 0 chr9 44161461 44161573 -98109871 - L1MB1 LINE L1 -19 6170 6029 1445 181 16 23 chr9 44161580 44161884 -98109560 + L1M3 LINE L1 5484 5785 -383 26 0 0 0 chr9 44163634 44163660 -98107784 + AT_rich Low_complexity Low_complexity 1 26 0 433 165 31 16 chr9 44163755 44163882 -98107562 + CT-rich Low_complexity Low_complexity 4 132 0 295 129 0 57 chr9 44164596 44164666 -98106778 + (GGGAA)n Simple_repeat Simple_repeat 3 68 0 349 284 29 10 chr9 44165776 44165878 -98105566 - MER5B DNA MER1_type 0 178 75 1788 173 13 7 chr9 44166012 44166313 -98105131 - AluJb SINE Alu -6 306 4 655 288 29 0 chr9 44166832 44167002 -98104442 - MIR SINE MIR -74 188 14 256 159 16 16 chr9 44167285 44167348 -98104096 + GA-rich Low_complexity Low_complexity 2 64 0 3976 119 34 0 chr9 44168819 44169433 -98102011 - MER41B LTR ERV1 0 635 1 292 224 26 0 chr9 44170545 44170621 -98100823 - MER116 DNA Mariner 0 80 3 327 49 0 0 chr9 44171469 44171510 -98099934 + (TA)n Simple_repeat Simple_repeat 2 42 0 240 257 59 10 chr9 44171549 44171650 -98099794 - L1M4 LINE L1 -290 5884 5779 708 296 57 6 chr9 44172003 44172234 -98099210 + MIR SINE MIR 5 244 -18 294 233 22 11 chr9 44172427 44172517 -98098927 - L1M4 LINE L1 -2312 5473 5383 2302 69 0 0 chr9 44172522 44172828 -98098616 - AluY SINE Alu 0 311 6 264 281 65 43 chr9 44173117 44173256 -98098188 - L1P LINE L1 -1101 5045 4904 2163 117 0 13 chr9 44173388 44173688 -98097756 - AluSx SINE Alu -16 296 1 13228 182 33 36 chr9 44173774 44175789 -98095655 - L1MA8 LINE L1 -2 7708 5689 1646 176 32 7 chr9 44175789 44176073 -98095371 - AluJb SINE Alu -21 291 1 13228 182 33 36 chr9 44176073 44177487 -98093957 - L1MA8 LINE L1 -2021 5689 4272 2150 116 20 0 chr9 44177487 44177788 -98093656 - AluSc SINE Alu -2 307 1 13228 182 33 36 chr9 44177788 44178223 -98093221 - L1MA8 LINE L1 -3438 4272 3837 2311 90 0 13 chr9 44178223 44178522 -98092922 - AluSg SINE Alu -15 295 1 13228 182 33 36 chr9 44178522 44179788 -98091656 - L1MA8 LINE L1 -3873 3837 2598 287 169 14 0 chr9 44179804 44179875 -98091569 + CT-rich Low_complexity Low_complexity 3 74 0 684 257 0 0 chr9 44179926 44180062 -98091382 - FRAM SINE Alu -40 136 1 703 232 83 9 chr9 44180063 44180399 -98091045 - L1M3c LINE L1 -4572 2465 2105 695 167 61 14 chr9 44180405 44180580 -98090864 - MSTD LTR MaLR -51 377 155 234 114 0 0 chr9 44180578 44180613 -98090831 - MSTD LTR MaLR -361 35 1 * 5490 143 19 6 chr9 44180634 44182105 -98089339 - L1PA16 LINE L1 -5 6161 4675 317 237 108 0 chr9 44182133 44182226 -98089218 - L1M3c LINE L1 -6922 108 6 2221 92 37 7 chr9 44182600 44182895 -98088549 - AluSq SINE Alu -9 304 1 24 0 0 0 chr9 44183424 44183448 -98087996 + AT_rich Low_complexity Low_complexity 1 24 0 273 308 192 0 chr9 44183629 44183785 -98087659 - MIR SINE MIR -1 261 76 181 343 60 0 chr9 44185133 44185200 -98086244 - MIR SINE MIR -121 141 71 827 120 20 7 chr9 44185489 44185639 -98085805 - L1MB3 LINE L1 -3 6180 6029 235 180 20 0 chr9 44185917 44185967 -98085477 + (TA)n Simple_repeat Simple_repeat 2 52 0 201 74 0 0 chr9 44185991 44186018 -98085426 + (TG)n Simple_repeat Simple_repeat 2 28 0 27 0 0 0 chr9 44186018 44186045 -98085399 + AT_rich Low_complexity Low_complexity 1 27 0 201 324 127 0 chr9 44187461 44187607 -98083837 - L2 LINE L2 -264 3049 2885 536 291 53 93 chr9 44187793 44188168 -98083276 - L2 LINE L2 -658 2656 2297 623 268 113 26 chr9 44188973 44189283 -98082161 - MER46C DNA MER2_type 0 338 2 2145 100 25 0 chr9 44190029 44190350 -98081094 + L1MA2 LINE L1 5976 6304 0 198 274 48 0 chr9 44191008 44191070 -98080374 - L2 LINE L2 -2 3270 3206 1229 210 107 62 chr9 44191076 44191514 -98079930 - MLT1C LTR MaLR -4 463 6 870 102 0 8 chr9 44192012 44192183 -98079261 - AluSp/q SINE Alu 0 336 167 2126 130 0 34 chr9 44192323 44192646 -98078798 + AluSx SINE Alu 1 312 0 23 54 0 0 chr9 44192865 44192902 -98078542 + AT_rich Low_complexity Low_complexity 1 37 0 431 218 73 0 chr9 44193736 44193846 -98077598 + L1MA8 LINE L1 5914 6031 -260 203 136 23 23 chr9 44194746 44194790 -98076654 + (TA)n Simple_repeat Simple_repeat 1 44 0 200 336 33 33 chr9 44195376 44195498 -98075946 + L3 LINE CR1 597 718 -859 2065 119 0 0 chr9 44195802 44196117 -98075327 - AluSc SINE Alu 0 315 1 206 136 23 0 chr9 44198256 44198300 -98073144 + (CAT)n Simple_repeat Simple_repeat 2 46 0 2053 275 39 7 chr9 44199079 44199969 -98071475 + L1MEc LINE L1 2172 3051 -3164 546 214 40 0 chr9 44201448 44201574 -98069870 - L1MD2 LINE L1 -19 6340 6210 234 265 179 26 chr9 44201612 44201729 -98069715 - L1ME1 LINE L1 -90 6076 5942 * 456 206 96 14 chr9 44201727 44201873 -98069571 - L1MDa LINE L1 -6363 177 20 926 179 17 125 chr9 44202177 44202291 -98069153 - L1ME1 LINE L1 -334 5832 5707 2106 141 36 28 chr9 44202291 44202652 -98068792 - THE1B LTR MaLR 0 364 1 926 179 17 125 chr9 44202652 44202731 -98068713 - L1ME1 LINE L1 -459 5707 5621 1902 139 10 23 chr9 44202731 44203033 -98068411 - AluSx SINE Alu -14 298 1 926 179 17 125 chr9 44203033 44203189 -98068255 - L1ME1 LINE L1 -545 5621 5520 1014 214 41 22 chr9 44203219 44203537 -98067907 - L1ME1 LINE L1 -1610 4536 4213 1131 284 11 11 chr9 44203555 44203914 -98067530 + LTR40c LTR ERVL 5 363 -102 271 228 87 11 chr9 44203917 44204009 -98067435 - L1ME LINE L1 -676 5490 5392 * 461 244 31 2 chr9 44204007 44204140 -98067304 + L1ME2 LINE L1 5488 5638 -546 966 262 60 40 chr9 44204149 44204618 -98066826 + L1ME2 LINE L1 5686 6163 -1 1191 150 0 6 chr9 44205218 44205398 -98066046 + AluSq SINE Alu 1 179 -134 251 286 43 0 chr9 44205419 44205489 -98065955 + GA-rich Low_complexity Low_complexity 6 78 0 180 0 0 0 chr9 44205490 44205510 -98065934 + (GGGGA)n Simple_repeat Simple_repeat 2 21 0 353 296 0 22 chr9 44206867 44207046 -98064398 + (TA)n Simple_repeat Simple_repeat 1 175 0 228 174 0 0 chr9 44207075 44207121 -98064323 - LTR66 LTR ERVL -171 439 394 204 40 0 0 chr9 44207158 44207183 -98064261 + (CA)n Simple_repeat Simple_repeat 2 26 0 300 253 58 0 chr9 44207271 44207358 -98064086 - L1MC4 LINE L1 -1337 6705 6614 698 120 0 0 chr9 44208306 44208414 -98063030 - L1MA2 LINE L1 0 6304 6197 207 0 0 0 chr9 44208502 44208525 -98062919 + (CAT)n Simple_repeat Simple_repeat 2 24 0 2127 68 21 21 chr9 44209375 44209690 -98061754 + AluSg SINE Alu 2 316 0 1861 147 55 0 chr9 44209762 44210108 -98061336 - L1MB3 LINE L1 -1 6182 5818 317 229 24 0 chr9 44210120 44210203 -98061241 - L1MB3 LINE L1 -411 5772 5688 669 213 20 87 chr9 44210210 44210405 -98061039 - MIR SINE MIR -48 214 31 322 219 21 31 chr9 44210579 44210675 -98060769 + MER58C DNA MER1_type 24 118 -97 1716 204 0 7 chr9 44210684 44210992 -98060452 + AluJo SINE Alu 1 306 -6 317 214 0 12 chr9 44210999 44211083 -98060361 + GA-rich Low_complexity Low_complexity 3 85 0 374 240 39 0 chr9 44211087 44211191 -98060253 + MER58C DNA MER1_type 106 213 -2 2331 164 24 19 chr9 44211201 44211669 -98059775 - L1MA7 LINE L1 0 6291 5822 884 91 15 23 chr9 44213235 44213367 -98058077 - FLAM_C SINE Alu -2 131 1 2414 63 0 60 chr9 44214607 44214938 -98056506 + AluY SINE Alu 1 311 0 21 0 0 0 chr9 44216148 44216169 -98055275 + AT_rich Low_complexity Low_complexity 1 21 0 1815 117 53 0 chr9 44218116 44218424 -98053020 + AluSc SINE Alu 1 322 0 21 0 0 0 chr9 44219742 44219763 -98051681 + AT_rich Low_complexity Low_complexity 1 21 0 2048 108 0 57 chr9 44219763 44220079 -98051365 + AluY SINE Alu 1 298 -13 543 193 0 93 chr9 44221209 44221370 -98050074 - L1ME1 LINE L1 -8 6158 6013 241 381 68 7 chr9 44223431 44223578 -98047866 + L2 LINE L2 3109 3264 -8 2152 126 0 0 chr9 44224023 44224325 -98047119 + AluY SINE Alu 4 305 -6 283 353 172 0 chr9 44225423 44225545 -98045899 - L2 LINE L2 -3 3269 3127 627 268 50 42 chr9 44226024 44226477 -98044967 + MLT1D LTR MaLR 7 505 0 192 77 0 0 chr9 44226855 44226881 -98044563 + (A)n Simple_repeat Simple_repeat 1 26 0 267 281 28 28 chr9 44227355 44227533 -98043911 + MLT1K LTR MaLR 88 265 -323 576 252 48 0 chr9 44227588 44227735 -98043709 - L2 LINE L2 0 3313 3160 312 312 208 9 chr9 44227790 44228011 -98043433 + MLT1K LTR MaLR 309 573 -15 187 350 21 57 chr9 44228285 44228479 -98042965 + L2 LINE L2 2738 2924 -390 1101 70 6 38 chr9 44229223 44229381 -98042063 - AluYb8 SINE Alu -165 153 1 1711 85 15 0 chr9 44230013 44230273 -98041171 + L1MA1 LINE L1 6039 6302 0 26 0 0 0 chr9 44230275 44230301 -98041143 + AT_rich Low_complexity Low_complexity 1 26 0 1773 139 0 0 chr9 44231144 44231396 -98040048 + AluSg SINE Alu 45 296 -14 611 85 0 0 chr9 44231584 44231666 -98039778 + L1PA4 LINE L1 7 88 -6058 31830 51 37 34 chr9 44231666 44237186 -98034258 + L1PA4 LINE L1 617 6152 -3 254 331 108 16 chr9 44237300 44237551 -98033893 + LTR16C LTR ERVL 169 442 -49 1305 175 59 20 chr9 44238023 44238326 -98033118 - LTR40b LTR ERVL 0 462 148 24 0 0 0 chr9 44238759 44238783 -98032661 + AT_rich Low_complexity Low_complexity 1 24 0 629 253 146 0 chr9 44241262 44241495 -98029949 - L1MC4 LINE L1 -180 7862 7596 610 103 0 0 chr9 44241875 44241962 -98029482 - AluSg/x SINE Alu -10 300 214 1143 111 6 12 chr9 44241962 44242124 -98029320 - AluSq SINE Alu -152 161 1 2409 70 0 23 chr9 44242774 44243076 -98028368 - AluSq SINE Alu -18 295 1 22 0 0 0 chr9 44244458 44244480 -98026964 + GC_rich Low_complexity Low_complexity 1 22 0 309 210 153 51 chr9 44244942 44245099 -98026345 - MER96B DNA MER1_type? -244 173 1 2104 85 24 3 chr9 44245788 44246081 -98025363 + AluSc SINE Alu 1 299 -10 21 36 0 0 chr9 44246874 44246902 -98024542 + AT_rich Low_complexity Low_complexity 1 28 0 1970 141 0 16 chr9 44247261 44247566 -98023878 - AluSx SINE Alu -12 300 1 27 29 0 0 chr9 44248828 44248862 -98022582 + AT_rich Low_complexity Low_complexity 1 34 0 2320 110 0 3 chr9 44249164 44249474 -98021970 + AluY SINE Alu 1 309 -2 26 50 0 0 chr9 44250922 44250962 -98020482 + AT_rich Low_complexity Low_complexity 1 40 0 1301 99 10 20 chr9 44251379 44251553 -98019891 - AluY SINE Alu -7 304 131 383 0 21 0 chr9 44251553 44251600 -98019844 + (TG)n Simple_repeat Simple_repeat 2 49 0 1301 99 10 20 chr9 44251600 44251626 -98019818 - AluY SINE Alu -180 131 106 262 0 0 0 chr9 44251628 44251664 -98019780 - AluY SINE Alu -130 171 136 441 0 0 0 chr9 44251664 44251713 -98019731 + (TG)n Simple_repeat Simple_repeat 2 50 0 2324 69 10 0 chr9 44251714 44252005 -98019439 - AluY SINE Alu -17 294 1 2081 130 7 0 chr9 44252231 44252530 -98018914 + AluSx SINE Alu 1 301 -11 3654 117 71 23 chr9 44252541 44252768 -98018676 + L1PA15 LINE L1 5522 5737 -428 2274 88 0 0 chr9 44252768 44253073 -98018371 + AluY SINE Alu 1 305 -6 3654 117 71 23 chr9 44253073 44253453 -98017991 + L1PA15 LINE L1 5737 6158 -7 334 317 148 0 chr9 44253537 44253679 -98017765 + MIR SINE MIR 74 236 -26 2021 258 64 27 chr9 44253794 44254851 -98016593 + L1MEc LINE L1 1562 2617 -3598 2283 103 0 3 chr9 44254851 44255153 -98016291 - AluSq SINE Alu -12 301 1 2021 258 64 27 chr9 44255153 44255385 -98016059 + L1MEc LINE L1 2617 2839 -3376 1741 231 26 30 chr9 44256176 44256706 -98014738 + L1M4c LINE L1 794 1323 -5061 2942 141 103 6 chr9 44256706 44257211 -98014233 + MER41C LTR ERV1 1 554 0 1741 231 26 30 chr9 44257211 44257290 -98014154 + L1M4c LINE L1 1323 1401 -4983 266 266 0 0 chr9 44257311 44257375 -98014069 + L1M4c LINE L1 1595 1658 -4726 * 4913 208 67 48 chr9 44257371 44257610 -98013834 + L1MC2 LINE L1 17 250 -6176 2161 128 10 0 chr9 44257610 44257915 -98013529 + AluSq SINE Alu 1 308 -5 4913 208 67 48 chr9 44257915 44260208 -98011236 + L1MC2 LINE L1 250 2575 -3851 1148 194 35 10 chr9 44260403 44260691 -98010753 + LTR43 LTR ERV1 176 470 -132 5211 235 47 81 chr9 44260773 44263310 -98008134 + L1MC2 LINE L1 2564 5014 -1412 1757 189 53 7 chr9 44263309 44263727 -98007717 + L1MC2 LINE L1 6187 6623 -1 * 1228 260 36 4 chr9 44263732 44264209 -98007235 + L1M4c LINE L1 2398 2889 -3493 452 266 18 50 chr9 44264213 44264389 -98007055 + L1M4c LINE L1 1491 1660 -4724 2477 70 0 0 chr9 44264389 44264688 -98006756 + AluY SINE Alu 1 299 -12 452 266 18 50 chr9 44264688 44264729 -98006715 + L1M4c LINE L1 1660 1701 -4683 4775 84 9 0 chr9 44265153 44265919 -98005525 + L1P3 LINE L1 4692 5461 -693 2421 45 7 7 chr9 44265942 44266250 -98005194 - AluY SINE Alu -3 308 1 903 116 177 22 chr9 44266250 44266431 -98005013 + THE1B LTR MaLR 156 364 0 295 288 8 23 chr9 44266433 44266565 -98004879 + L1M4c LINE L1 2616 2745 -3637 2174 214 72 12 chr9 44366591 44367239 -97904205 - L1MD2 LINE L1 -226 6133 5447 603 329 108 67 chr9 44367447 44368124 -97903320 - L2 LINE L2 -340 2974 2270 205 222 56 0 chr9 44371445 44371499 -97899945 + (TATATG)n Simple_repeat Simple_repeat 1 57 0 382 211 19 0 chr9 44371521 44371625 -97899819 + (TA)n Simple_repeat Simple_repeat 1 106 0 231 318 167 0 chr9 44372232 44372358 -97899086 + MLT1H LTR MaLR 399 545 -4 378 353 75 44 chr9 44372494 44372976 -97898468 + L3 LINE CR1 338 834 -743 12615 37 3 0 chr9 44373452 44375764 -97895680 + L1PA4 LINE L1 3841 6155 0 1737 69 0 0 chr9 44377745 44377978 -97893466 - L1PA3 LINE L1 -59 6096 5864 22 80 0 0 chr9 44378117 44378167 -97893277 + AT_rich Low_complexity Low_complexity 1 50 0 1504 182 35 14 chr9 44378562 44378848 -97892596 + AluJo SINE Alu 1 292 -20 1920 158 61 18 chr9 44379751 44380144 -97891300 + MSTA LTR MaLR 19 428 0 1911 225 106 35 chr9 44380146 44380767 -97890677 + MSTA-int LTR MaLR 3 667 -913 2104 111 4 0 chr9 44380789 44381100 -97890344 - AluY SINE Alu 0 314 3 3253 85 12 26 chr9 44381108 44381602 -97889842 - LTR15 LTR ERV1 -6 487 1 3973 185 80 17 chr9 44381604 44382476 -97888968 + MSTA-int LTR MaLR 725 1651 0 2087 178 41 14 chr9 44382476 44382893 -97888551 + MSTA LTR MaLR 1 428 0 21 57 0 0 chr9 44382909 44382944 -97888500 + AT_rich Low_complexity Low_complexity 1 35 0 2041 191 26 28 chr9 44383137 44383599 -97887845 - MER65C LTR ERV1 0 461 1 290 184 80 112 chr9 44383604 44383729 -97887715 - MER65C-int LTR ERV1 -5 4866 4746 334 248 70 8 chr9 44383776 44383905 -97887539 - LTR57-int LTR ERVL -4183 1160 1024 * 487 269 23 6 chr9 44383807 44383982 -97887462 - MER65-int LTR ERV1 -2819 2052 1875 4444 248 159 26 chr9 44383985 44385911 -97885533 + L1PA15-16 LINE L1 3 2226 -4623 2076 144 0 0 chr9 44385911 44386210 -97885234 - AluSx SINE Alu -13 299 1 4444 248 159 26 chr9 44386210 44386353 -97885091 + L1PA15-16 LINE L1 2226 2349 -4500 569 252 31 2 chr9 44386357 44386667 -97884777 - LTR34 LTR ERV1 -189 510 156 336 218 73 18 chr9 44386810 44386920 -97884524 - MER4C LTR ERV1 -346 119 4 1301 163 66 31 chr9 44387120 44387377 -97884067 + AluJo SINE Alu 1 266 -46 344 330 128 35 chr9 44387419 44387516 -97883928 + L1MC4a LINE L1 5542 5629 -2179 1884 132 0 4 chr9 44387516 44387803 -97883641 - AluSx SINE Alu 0 306 21 344 330 128 35 chr9 44387803 44388015 -97883429 + L1MC4a LINE L1 5629 5882 -1926 31 0 0 0 chr9 44388288 44388319 -97883125 + AT_rich Low_complexity Low_complexity 1 31 0 247 296 37 12 chr9 44388357 44388438 -97883006 + MIR SINE MIR 61 143 -65 22 0 0 0 chr9 44389889 44389911 -97881533 + AT_rich Low_complexity Low_complexity 1 22 0 917 81 0 0 chr9 44389911 44390034 -97881410 - L1MA3 LINE L1 0 6305 6183 1194 112 5 21 chr9 44390035 44390222 -97881222 - THE1C LTR MaLR -191 184 1 185 299 15 15 chr9 44393808 44393875 -97877569 - L2 LINE L2 -75 3238 3172 330 107 0 0 chr9 44394210 44394266 -97877178 + (TG)n Simple_repeat Simple_repeat 1 56 0 209 167 19 0 chr9 44394270 44394324 -97877120 + GA-rich Low_complexity Low_complexity 2 56 0 867 295 138 26 chr9 44394352 44394932 -97876512 - L2 LINE L2 -831 2483 1839 611 64 0 0 chr9 44395134 44395212 -97876232 + L1PA8 LINE L1 6077 6154 -18 351 0 0 0 chr9 44395212 44395251 -97876193 + (GA)n Simple_repeat Simple_repeat 2 40 0 1812 178 13 0 chr9 44395257 44395560 -97875884 + AluSx SINE Alu 1 307 -5 386 305 68 23 chr9 44395560 44395805 -97875639 + L1ME LINE L1 5453 5725 -437 312 197 28 44 chr9 44395859 44395966 -97875478 + L1MC4 LINE L1 1995 6984 -1338 696 159 44 0 chr9 44395972 44396229 -97875215 + (TA)n Simple_repeat Simple_repeat 1 268 0 227 236 0 0 chr9 44396183 44396238 -97875206 - L1MC4 LINE L1 -1340 6702 6648 * 2160 100 4 0 chr9 44396260 44396541 -97874903 - AluSq SINE Alu -31 282 1 219 319 14 0 chr9 44396595 44396664 -97874780 + L2 LINE L2 3242 3311 -2 1239 149 56 5 chr9 44397187 44397401 -97874043 - MER61E LTR ERV1 -4 565 341 260 253 10 91 chr9 44397453 44397552 -97873892 - MER61E LTR ERV1 -380 189 99 * 378 257 35 9 chr9 44397549 44397662 -97873782 - LTR25 LTR ERV1 -431 363 248 1947 125 11 0 chr9 44398241 44398513 -97872931 - AluSx SINE Alu -2 310 36 818 242 79 47 chr9 44398679 44398997 -97872447 + MER89-int LTR ERV1 1030 1357 -5444 1588 223 27 3 chr9 44398997 44399329 -97872115 + MLT1A1 LTR MaLR 1 340 -25 830 253 54 40 chr9 44399358 44399654 -97871790 + MER89-int LTR ERV1 1361 1660 -5141 1983 130 0 38 chr9 44400954 44401133 -97870311 - AluSg SINE Alu -7 303 140 1746 69 4 26 chr9 44401133 44401392 -97870052 - AluY SINE Alu 0 311 63 1983 130 0 38 chr9 44401392 44401527 -97869917 - AluSg SINE Alu -170 140 1 1498 192 173 16 chr9 44406733 44407103 -97864341 + MSTA LTR MaLR 1 428 0 1530 106 63 18 chr9 44410957 44415338 -97856106 - GSATII Satellite centromeric 0 4579 1 2680 150 10 14 chr9 44415341 44415833 -97855611 - TAR1 Satellite telomeric -105 2006 1517 1207 171 50 14 chr9 44415833 44416868 -97854576 - GSATII Satellite centromeric 0 1072 1 8105 65 4 21 chr9 44416882 44418139 -97853305 + SST1 Satellite centromeric 1 1235 0 267 175 0 0 chr9 44418156 44418213 -97853231 + (TG)n Simple_repeat Simple_repeat 1 57 0 350 139 14 0 chr9 44418236 44418308 -97853136 + CT-rich Low_complexity Low_complexity 2 74 0 351 290 169 33 chr9 44419227 44419624 -97851820 + L1 LINE L1 2869 3319 -2827 593 238 73 0 chr9 44419645 44419796 -97851648 - MER58B DNA MER1_type -16 325 164 396 327 40 36 chr9 44419886 44420381 -97851063 + L1 LINE L1 3369 3865 -2281 421 247 38 25 chr9 44421023 44421181 -97850263 - L1M4 LINE L1 -1232 4914 4755 234 62 0 0 chr9 44421813 44421845 -97849599 + (TTTTA)n Simple_repeat Simple_repeat 2 33 0 4259 96 24 13 chr9 44421845 44422463 -97848981 - L1PA8 LINE L1 -28 6144 5520 1792 156 55 0 chr9 44423297 44423475 -97847969 - AluSx SINE Alu -7 305 103 212 0 36 0 chr9 44423475 44423503 -97847941 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1792 156 55 0 chr9 44423503 44423613 -97847831 - AluSx SINE Alu -209 103 1 327 266 11 0 chr9 44423620 44423714 -97847730 - MIR SINE MIR -65 197 103 395 263 11 0 chr9 44424192 44424287 -97847157 - Zaphod DNA AcHobo -1 4030 3935 346 20 39 0 chr9 44424783 44424834 -97846610 + (CAAAA)n Simple_repeat Simple_repeat 2 54 0 1385 225 21 106 chr9 44425048 44425079 -97846365 + MLT1D LTR MaLR 1 33 -472 2091 156 37 6 chr9 44425079 44425432 -97846012 + THE1B LTR MaLR 1 364 0 1385 225 21 106 chr9 44425432 44425685 -97845759 + MLT1D LTR MaLR 33 224 -281 1124 155 10 5 chr9 44425685 44425892 -97845552 - L1MA6 LINE L1 -6 6294 6087 1385 225 21 106 chr9 44425892 44426127 -97845317 + MLT1D LTR MaLR 224 477 -28 245 349 14 37 chr9 44426734 44426952 -97844492 - L2 LINE L2 -2248 1066 854 182 301 49 41 chr9 44427014 44427137 -97844307 - L2 LINE L2 -2570 744 621 686 247 29 23 chr9 44429295 44429469 -97841975 - MER45A DNA AcHobo -3 175 1 24 67 0 0 chr9 44429670 44429715 -97841729 + AT_rich Low_complexity Low_complexity 1 45 0 33 66 0 0 chr9 44429774 44429835 -97841609 + AT_rich Low_complexity Low_complexity 1 61 0 180 0 0 0 chr9 44430737 44430757 -97840687 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 992 338 33 7 chr9 44430787 44431210 -97840234 + LTR16B LTR ERVL 22 455 -9 286 284 17 9 chr9 44431956 44432072 -97839372 + L1ME3A LINE L1 4905 5021 -1125 444 298 117 32 chr9 44432253 44432689 -97838755 + L1ME3A LINE L1 5476 5948 -222 31 26 0 0 chr9 44434661 44434699 -97836745 + AT_rich Low_complexity Low_complexity 1 38 0 2391 59 7 10 chr9 44435954 44436258 -97835186 - AluY SINE Alu -7 304 2 438 115 0 53 chr9 44436476 44436589 -97834855 + (TTCCC)n Simple_repeat Simple_repeat 2 108 0 586 208 0 0 chr9 44436776 44436882 -97834562 - AluJb SINE Alu -12 300 195 886 241 103 103 chr9 44436988 44437306 -97834138 - MLT1D LTR MaLR 0 505 185 2106 128 3 10 chr9 44437306 44437612 -97833832 + AluSx SINE Alu 1 304 -8 886 241 103 103 chr9 44437612 44437796 -97833648 - MLT1D LTR MaLR -319 186 3 63 51 0 0 chr9 44438385 44438483 -97832961 + AT_rich Low_complexity Low_complexity 1 98 0 265 182 20 40 chr9 44438611 44438710 -97832734 + (TTATA)n Simple_repeat Simple_repeat 2 98 0 258 315 22 62 chr9 44438710 44438888 -97832556 - MIR SINE MIR -90 172 2 3322 260 56 31 chr9 44438893 44439351 -97832093 - L1ME1 LINE L1 -239 5996 5551 2287 114 3 0 chr9 44439351 44439657 -97831787 - AluSq SINE Alu -6 307 1 1625 164 3 61 chr9 44439659 44439969 -97831475 - AluJo SINE Alu -16 296 5 3322 260 56 31 chr9 44439969 44441390 -97830054 - L1ME1 LINE L1 -684 5551 4064 981 207 54 86 chr9 44441399 44441521 -97829923 - L1ME1 LINE L1 -4044 2352 2228 2317 102 0 3 chr9 44441521 44441826 -97829618 - AluSg SINE Alu 0 310 7 981 207 54 86 chr9 44441826 44441879 -97829565 - L1ME1 LINE L1 -4168 2228 2175 2694 170 27 47 chr9 44441879 44442431 -97829013 + MER34 LTR ERV1 1 541 -1 981 207 54 86 chr9 44442431 44442757 -97828687 - L1ME1 LINE L1 -4221 2175 1866 2187 117 3 0 chr9 44442778 44443076 -97828368 - AluSc SINE Alu 0 309 11 713 236 69 6 chr9 44443103 44443277 -97828167 - MER58A DNA MER1_type -38 186 2 1068 305 53 2 chr9 44443279 44443709 -97827735 - L1ME1 LINE L1 -4525 1871 1420 2466 181 18 20 chr9 44443727 44444219 -97827225 + L1P LINE L1 4076 4566 -1580 22 0 0 0 chr9 44444293 44444315 -97827129 + AT_rich Low_complexity Low_complexity 1 22 0 2213 121 48 22 chr9 44445527 44445882 -97825562 + THE1B LTR MaLR 1 364 0 9421 113 11 0 chr9 44445882 44447178 -97824266 + THE1B-int LTR MaLR 1 1310 -270 1397 269 78 63 chr9 44447178 44447629 -97823815 + L1ME2 LINE L1 4157 4600 -1564 2093 122 0 26 chr9 44447629 44447940 -97823504 + AluY SINE Alu 1 303 -8 1397 269 78 63 chr9 44447940 44448859 -97822585 + L1ME2 LINE L1 4600 5565 -599 2048 98 0 60 chr9 44448859 44449174 -97822270 + AluY SINE Alu 1 296 -15 1397 269 78 63 chr9 44449174 44449590 -97821854 + L1ME2 LINE L1 5565 5973 -191 828 174 0 0 chr9 44449595 44449733 -97821711 + AluSg/x SINE Alu 161 298 -14 2198 113 0 0 chr9 44450001 44450301 -97821143 + AluY SINE Alu 1 300 -11 203 394 94 25 chr9 44451149 44451309 -97820135 - L2 LINE L2 0 3272 3102 185 108 27 0 chr9 44451528 44451565 -97819879 + CT-rich Low_complexity Low_complexity 2 39 0 212 86 29 0 chr9 44451568 44451603 -97819841 + (TA)n Simple_repeat Simple_repeat 1 36 0 30 45 0 0 chr9 44451619 44451663 -97819781 + AT_rich Low_complexity Low_complexity 1 44 0 1763 142 40 20 chr9 44452058 44452361 -97819083 + AluSg1 SINE Alu 1 309 0 2126 128 0 3 chr9 44453552 44453865 -97817579 - AluSq SINE Alu -1 312 1 2273 133 20 145 chr9 44454450 44454960 -97816484 + MER4E LTR ERV1 305 750 -29 1429 165 134 0 chr9 44455446 44455707 -97815737 + AluJb SINE Alu 2 297 -5 2031 174 29 84 chr9 44457383 44457794 -97813650 - L1PB4 LINE L1 -3 6153 5776 5265 88 0 4 chr9 44457794 44458507 -97812937 - L1PA7 LINE L1 -7 6147 5438 2031 174 29 84 chr9 44458507 44458617 -97812827 - L1PB4 LINE L1 -380 5776 5661 683 344 122 20 chr9 44458980 44459537 -97811907 - L2 LINE L2 -25 3288 2670 306 0 0 0 chr9 44460241 44460275 -97811169 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 24 0 0 0 chr9 44462197 44462221 -97809223 + AT_rich Low_complexity Low_complexity 1 24 0 29 0 0 0 chr9 44462376 44462405 -97809039 + AT_rich Low_complexity Low_complexity 1 29 0 1229 182 39 9 chr9 44462596 44462827 -97808617 + AluJo SINE Alu 21 258 -54 258 136 0 0 chr9 44462830 44462874 -97808570 + (A)n Simple_repeat Simple_repeat 1 44 0 594 260 0 0 chr9 44463045 44463168 -97808276 + FLAM_A SINE Alu 2 124 -9 2976 189 32 8 chr9 44463324 44463913 -97807531 - MER6A DNA MER2_type -1 604 2 201 218 0 58 chr9 44464450 44464537 -97806907 + A-rich Low_complexity Low_complexity 4 85 0 22 0 0 0 chr9 44466135 44466157 -97805287 + AT_rich Low_complexity Low_complexity 1 22 0 3035 175 73 17 chr9 44466200 44466339 -97805105 - L1MA6 LINE L1 -365 5935 5805 565 14 27 0 chr9 44466339 44466413 -97805031 + (TAGA)n Simple_repeat Simple_repeat 3 78 0 3035 175 73 17 chr9 44466413 44466994 -97804450 - L1MA6 LINE L1 -495 5805 5183 22 0 0 0 chr9 44467597 44467619 -97803825 + AT_rich Low_complexity Low_complexity 1 22 0 326 314 0 0 chr9 44467623 44467725 -97803719 + MER103 DNA DNA 26 127 -39 235 304 108 23 chr9 44468097 44468311 -97803133 - L1MEd LINE L1 -4862 1257 1026 379 296 32 0 chr9 44468614 44468739 -97802705 - MIR SINE MIR -67 195 67 422 236 82 127 chr9 44469345 44469722 -97801722 - MER57B LTR ERV1 -2 401 42 303 311 57 6 chr9 44470163 44470340 -97801104 - L1MEd LINE L1 -4969 1150 965 261 208 0 0 chr9 44470342 44470390 -97801054 + MER58B DNA MER1_type 279 326 -15 266 254 9 53 chr9 44470467 44470581 -97800863 - L1MEd LINE L1 -5554 565 457 2606 32 0 10 chr9 44470736 44471046 -97800398 + AluY SINE Alu 1 307 -4 306 350 62 0 chr9 44471112 44471272 -97800172 - L1MEd LINE L1 -5943 176 7 315 335 18 6 chr9 44472522 44472692 -97798752 + MER5B DNA MER1_type 4 175 -3 4377 137 8 3 chr9 44472697 44473406 -97798038 + L1PA13 LINE L1 5451 6163 0 1129 222 118 12 chr9 44474720 44475058 -97796386 - MLT1A2 LTR MaLR 0 374 1 388 64 51 13 chr9 44475059 44475137 -97796307 + (TA)n Simple_repeat Simple_repeat 2 82 0 320 209 93 0 chr9 44475138 44475224 -97796220 - L1MC4 LINE L1 -1337 6705 6612 1795 190 18 0 chr9 44475274 44475600 -97795844 + Tigger1 DNA MER2_type 2 333 -2085 1399 161 13 67 chr9 44475658 44475956 -97795488 + AluJo SINE Alu 1 282 -30 1602 263 53 71 chr9 44476454 44477062 -97794382 - MER77 LTR ERV1 0 605 9 986 306 63 11 chr9 44477216 44477677 -97793767 - L1ME3A LINE L1 -171 5999 5515 524 278 75 63 chr9 44477862 44478193 -97793251 - LTR68 LTR ERV1 -292 448 114 733 366 149 0 chr9 44478208 44478659 -97792785 - MER69 DNA AcHobo -2008 518 1 333 303 57 100 chr9 44478660 44479066 -97792378 - L1ME LINE L1 -265 5856 5460 25 0 0 0 chr9 44479607 44479632 -97791812 + AT_rich Low_complexity Low_complexity 1 25 0 315 85 0 0 chr9 44481138 44481185 -97790259 + (TATG)n Simple_repeat Simple_repeat 2 48 0 2028 117 3 0 chr9 44481185 44481467 -97789977 - AluSg SINE Alu -27 283 1 233 233 50 0 chr9 44481825 44481885 -97789559 - MLT1J1 LTR MaLR -315 131 69 262 255 67 40 chr9 44482068 44482217 -97789227 + L1ME LINE L1 5522 5674 -492 35 0 0 0 chr9 44483115 44483150 -97788294 + AT_rich Low_complexity Low_complexity 1 35 0 1958 110 25 7 chr9 44483748 44484030 -97787414 + AluSx SINE Alu 5 291 -21 32 26 0 0 chr9 44485383 44485422 -97786022 + AT_rich Low_complexity Low_complexity 1 39 0 33 25 0 0 chr9 44485555 44485595 -97785849 + AT_rich Low_complexity Low_complexity 1 40 0 741 326 115 40 chr9 44485607 44486518 -97784926 + L2 LINE L2 2329 3312 -1 200 242 16 16 chr9 44486641 44486703 -97784741 + (TATATG)n Simple_repeat Simple_repeat 3 64 0 32 81 0 0 chr9 44487353 44487427 -97784017 + AT_rich Low_complexity Low_complexity 1 74 0 289 274 176 0 chr9 44487805 44487907 -97783537 + MIR3 SINE MIR 83 202 -6 23 0 0 0 chr9 44488757 44488780 -97782664 + AT_rich Low_complexity Low_complexity 1 23 0 312 313 42 72 chr9 44489688 44489778 -97781666 + Charlie2 DNA MER1_type 2 93 -2689 1594 258 59 35 chr9 44489778 44490285 -97781159 - LTR40a LTR ERVL 0 519 1 312 313 42 72 chr9 44490285 44490459 -97780985 + Charlie2 DNA MER1_type 93 258 -2524 229 250 0 0 chr9 44490629 44490681 -97780763 + LTR30 LTR ERV1 1 52 -670 519 117 56 145 chr9 44490685 44490864 -97780580 + LTR12 LTR ERV1 123 285 -429 226 227 0 40 chr9 44490865 44490940 -97780504 + LTR30 LTR ERV1 553 624 -98 517 143 59 76 chr9 44490940 44491059 -97780385 + LTR12 LTR ERV1 362 478 -236 437 315 41 6 chr9 44491063 44491266 -97780178 - MIR SINE MIR -27 235 27 834 201 44 84 chr9 44491370 44491619 -97779825 - MER8 DNA MER2_type 0 239 1 339 265 95 42 chr9 44492218 44492537 -97778907 + MLT1J2 LTR MaLR 40 450 0 603 286 80 50 chr9 44492616 44492979 -97778465 + MLT1I LTR MaLR 2 375 -34 700 286 19 19 chr9 44494662 44494875 -97776569 - MER58A DNA MER1_type -10 214 2 29 0 0 0 chr9 44494996 44495025 -97776419 + AT_rich Low_complexity Low_complexity 1 29 0 2148 98 3 13 chr9 44495364 44495671 -97775773 - AluY SINE Alu -7 304 1 384 218 0 0 chr9 44495787 44495874 -97775570 + (TATATG)n Simple_repeat Simple_repeat 3 89 0 339 216 9 18 chr9 44495874 44495983 -97775461 + L1MC4 LINE L1 2006 6983 -1339 311 333 0 0 chr9 44495903 44495993 -97775451 - L1MC4 LINE L1 -1339 6703 6614 * 240 184 0 0 chr9 44495993 44496042 -97775402 + (TA)n Simple_repeat Simple_repeat 2 50 0 327 344 50 28 chr9 44496134 44496352 -97775092 + L2 LINE L2 1564 1786 -1528 411 232 9 176 chr9 44496362 44496399 -97775045 - L1M4 LINE L1 -2022 4124 4082 1387 227 42 51 chr9 44496399 44496905 -97774539 + MLT1D LTR MaLR 1 501 -4 411 232 9 176 chr9 44496905 44497190 -97774254 - L1M4 LINE L1 -2064 4082 3856 250 336 23 16 chr9 44497564 44497692 -97773752 - L1MEc LINE L1 -5980 281 153 245 313 90 8 chr9 44497813 44497947 -97773497 - L1MEc LINE L1 -5923 147 3 234 281 29 151 chr9 44498486 44498590 -97772854 + L2 LINE L2 2476 2591 -723 1162 259 19 35 chr9 44498590 44498961 -97772483 - MLT1A1 LTR MaLR 0 365 1 234 281 29 151 chr9 44498961 44499004 -97772440 + L2 LINE L2 2591 2587 -727 11406 32 0 0 chr9 44499004 44501132 -97770312 - L1PA3 LINE L1 0 6155 4028 234 281 29 151 chr9 44501132 44501221 -97770223 + L2 LINE L2 2586 2684 -630 1557 201 160 9 chr9 44501222 44501627 -97769817 - MER31B LTR ERV1 0 543 1 501 283 102 54 chr9 44501688 44502130 -97769314 - L1M4 LINE L1 -3574 2572 2110 23 0 0 0 chr9 44502142 44502165 -97769279 + AT_rich Low_complexity Low_complexity 1 23 0 30 27 0 0 chr9 44502242 44502279 -97769165 + AT_rich Low_complexity Low_complexity 1 37 0 33 0 0 0 chr9 44502873 44502906 -97768538 + AT_rich Low_complexity Low_complexity 1 33 0 24 53 0 0 chr9 44503075 44503113 -97768331 + AT_rich Low_complexity Low_complexity 1 38 0 489 39 13 26 chr9 44503473 44503551 -97767893 + (TAGA)n Simple_repeat Simple_repeat 2 78 0 1888 142 3 14 chr9 44503743 44504038 -97767406 + AluSq SINE Alu 1 292 -21 183 333 51 0 chr9 44504465 44504543 -97766901 + MIR SINE MIR 76 157 -105 30 69 0 0 chr9 44505283 44505341 -97766103 + AT_rich Low_complexity Low_complexity 1 58 0 195 259 74 0 chr9 44506593 44506647 -97764797 - L2 LINE L2 -5 3308 3251 690 153 22 7 chr9 44506693 44506830 -97764614 + L1PA16 LINE L1 6026 6164 -2 3854 227 104 34 chr9 44506887 44507057 -97764387 + L1MC4a LINE L1 6517 6674 -1134 282 56 0 0 chr9 44507057 44507093 -97764351 + (TA)n Simple_repeat Simple_repeat 2 37 0 2275 95 0 3 chr9 44507093 44507388 -97764056 - AluY SINE Alu -17 294 1 3854 227 104 34 chr9 44507388 44508247 -97763197 + L1MC4a LINE L1 6674 7562 -246 2250 82 3 10 chr9 44508247 44508552 -97762892 - AluY SINE Alu -5 306 4 3854 227 104 34 chr9 44508552 44508818 -97762626 + L1MC4a LINE L1 7562 7808 0 213 159 0 0 chr9 44509355 44509399 -97762045 + A-rich Low_complexity Low_complexity 1 44 0 21 0 0 0 chr9 44509401 44509422 -97762022 + AT_rich Low_complexity Low_complexity 1 21 0 200 448 26 0 chr9 44509485 44509601 -97761843 - L2 LINE L2 -623 2691 2573 396 357 31 27 chr9 44509736 44509960 -97761484 - L2 LINE L2 -943 2371 2147 2228 176 19 27 chr9 44510318 44510800 -97760644 + L1MA5 LINE L1 5823 6300 0 26 0 0 0 chr9 44511211 44511237 -97760207 + AT_rich Low_complexity Low_complexity 1 26 0 199 393 25 33 chr9 44513063 44513185 -97758259 - L2 LINE L2 -3 3269 3149 2068 126 13 0 chr9 44513350 44513659 -97757785 - AluSp SINE Alu 0 313 1 2390 68 7 0 chr9 44514248 44514543 -97756901 - AluSp SINE Alu -16 297 1 248 216 0 0 chr9 44514592 44514643 -97756801 - MER58B DNA MER1_type 0 341 291 1015 196 93 47 chr9 44514709 44515030 -97756414 - MER58B DNA MER1_type -5 336 1 258 299 47 16 chr9 44515945 44516072 -97755372 - L1ME LINE L1 -376 5786 5656 603 351 37 3 chr9 44516262 44516615 -97754829 + L1ME3A LINE L1 5540 5904 -266 47 19 0 0 chr9 44516939 44516993 -97754451 + AT_rich Low_complexity Low_complexity 1 54 0 23 33 0 0 chr9 44517062 44517092 -97754352 + AT_rich Low_complexity Low_complexity 1 30 0 230 293 8 16 chr9 44517615 44517738 -97753706 + HAL1 LINE L1 923 1044 -1463 28 29 0 0 chr9 44518933 44518968 -97752476 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr9 44519366 44519388 -97752056 + AT_rich Low_complexity Low_complexity 1 22 0 303 278 97 42 chr9 44519569 44519713 -97751731 - HAL1b LINE L1 -746 602 451 1419 289 44 68 chr9 44519732 44520575 -97750869 - L1ME1 LINE L1 -27 6139 5317 669 191 48 8 chr9 44520966 44521092 -97750352 + FRAM SINE Alu 1 131 -45 21 57 0 0 chr9 44521101 44521136 -97750308 + AT_rich Low_complexity Low_complexity 1 35 0 399 304 52 40 chr9 44521256 44521681 -97749763 - L1ME1 LINE L1 -1391 4755 4326 1363 199 7 0 chr9 44521718 44521990 -97749454 + L1PA16 LINE L1 5877 6150 -16 727 209 7 0 chr9 44521990 44522129 -97749315 + MER67A LTR ERV1 404 543 0 249 345 23 0 chr9 44522140 44522227 -97749217 + L2 LINE L2 3225 3313 0 1151 206 5 5 chr9 44522248 44522462 -97748982 - MER46A DNA MER2_type -22 214 1 597 262 92 17 chr9 44522463 44522498 -97748946 - L1ME1 LINE L1 -1825 4321 4290 459 0 0 0 chr9 44522498 44522549 -97748895 + (TA)n Simple_repeat Simple_repeat 2 52 0 597 262 92 17 chr9 44522549 44522807 -97748637 - L1ME1 LINE L1 -1856 4290 4006 1575 232 30 24 chr9 44522807 44523237 -97748207 - MER89 LTR ERV1 0 559 28 1922 228 7 15 chr9 44523241 44523644 -97747800 - MER89-int LTR ERV1 -1 6800 6401 1558 282 58 31 chr9 44523644 44524162 -97747282 + MER74A LTR ERVL 1 532 -26 9163 204 25 16 chr9 44524221 44526426 -97745018 - L1PA16 LINE L1 -9 6157 3909 2211 48 44 0 chr9 44526426 44526728 -97744716 - AluY SINE Alu 0 314 1 9163 204 25 16 chr9 44526728 44527664 -97743780 - L1PA16 LINE L1 -2257 3909 2983 523 235 51 3 chr9 44528464 44528648 -97742796 - MLT1A2 LTR MaLR -4 370 162 756 192 11 50 chr9 44528688 44528870 -97742574 - MLT1A2 LTR MaLR -194 180 6 23 33 0 0 chr9 44529659 44529689 -97741755 + AT_rich Low_complexity Low_complexity 1 30 0 2185 117 0 0 chr9 44529748 44530047 -97741397 - AluSx SINE Alu -13 299 1 431 333 7 0 chr9 44530112 44530247 -97741197 + L1ME LINE L1 5506 5641 -521 1672 234 76 0 chr9 44530627 44531008 -97740436 + MER74A LTR ERVL 119 528 -30 207 290 0 0 chr9 44532103 44532172 -97739272 + (TCTCTG)n Simple_repeat Simple_repeat 4 72 0 22 70 0 0 chr9 44532395 44532438 -97739006 + AT_rich Low_complexity Low_complexity 1 43 0 29 47 0 0 chr9 44532685 44532728 -97738716 + AT_rich Low_complexity Low_complexity 1 43 0 29 70 0 0 chr9 44533096 44533153 -97738291 + AT_rich Low_complexity Low_complexity 1 57 0 21 71 0 0 chr9 44534482 44534524 -97736920 + AT_rich Low_complexity Low_complexity 1 42 0 188 111 28 0 chr9 44535409 44535445 -97735999 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 266 305 172 29 chr9 44535583 44535757 -97735687 + MIR SINE MIR 64 262 0 455 302 70 35 chr9 44536304 44536659 -97734785 - L1ME LINE L1 -348 5822 5458 24 32 0 0 chr9 44537813 44537844 -97733600 + AT_rich Low_complexity Low_complexity 1 31 0 1856 256 72 53 chr9 44537984 44538893 -97732551 - L1ME1 LINE L1 -5 6161 5244 1807 233 48 41 chr9 44538894 44539354 -97732090 - MER77 LTR ERV1 0 605 143 436 281 92 20 chr9 44539322 44539475 -97731969 - MER77 LTR ERV1 -380 225 62 * 21 0 0 0 chr9 44539557 44539578 -97731866 + AT_rich Low_complexity Low_complexity 1 21 0 8783 98 5 2 chr9 44539578 44541615 -97729829 + L1PA7 LINE L1 4089 6144 -10 305 284 104 26 chr9 44541623 44541891 -97729553 - L1ME1 LINE L1 -973 5173 4885 2672 196 21 45 chr9 44542294 44542915 -97728529 - L1MA6 LINE L1 -1 6299 5694 229 121 61 30 chr9 44543401 44543467 -97727977 + (TA)n Simple_repeat Simple_repeat 2 69 0 1632 199 3 3 chr9 44543494 44543800 -97727644 + AluJb SINE Alu 1 306 -6 1665 173 0 7 chr9 44545078 44545391 -97726053 + AluSx SINE Alu 1 311 0 4647 142 65 33 chr9 44545601 44546110 -97725334 - L1MA9 LINE L1 0 6312 5756 207 0 0 0 chr9 44546110 44546133 -97725311 + (TG)n Simple_repeat Simple_repeat 2 24 0 4647 142 65 33 chr9 44546133 44546573 -97724871 - L1MA9 LINE L1 -556 5756 5332 1916 156 42 31 chr9 44546573 44546933 -97724511 + THE1B LTR MaLR 1 364 0 10308 126 13 6 chr9 44546933 44548501 -97722943 + THE1B-int LTR MaLR 1 1580 0 755 95 0 0 chr9 44548501 44548596 -97722848 + THE1B LTR MaLR 1 95 -280 277 281 88 38 chr9 44548710 44548870 -97722574 - L1MC5 LINE L1 -97 7864 7697 189 0 0 0 chr9 44549363 44549384 -97722060 + (TTTG)n Simple_repeat Simple_repeat 1 21 0 2453 67 0 0 chr9 44549410 44549709 -97721735 - AluY SINE Alu -12 299 1 183 299 111 35 chr9 44549883 44550027 -97721417 - L2 LINE L2 -443 2871 2717 311 327 10 0 chr9 44550689 44550793 -97720651 - MIR SINE MIR -48 214 110 194 276 69 0 chr9 44550910 44550968 -97720476 - L3 LINE CR1 -584 993 932 704 290 53 95 chr9 44551155 44551869 -97719575 - L2 LINE L2 -247 3066 2310 860 288 128 21 chr9 44551869 44552258 -97719186 - LTR33A LTR ERVL -6 517 87 2359 291 61 61 chr9 44552370 44553163 -97718281 - L2 LINE L2 -994 2320 1525 766 230 17 65 chr9 44553163 44553393 -97718051 + MER20 DNA MER1_type 1 219 0 2359 291 61 61 chr9 44553393 44553822 -97717622 - L2 LINE L2 -1788 1526 1098 619 252 0 0 chr9 44557054 44557181 -97714263 - MER45A DNA AcHobo 0 178 52 1380 236 86 16 chr9 44557704 44558090 -97713354 - MLT1C LTR MaLR 0 467 55 440 171 13 0 chr9 44558394 44558470 -97712974 - MER45A DNA AcHobo -1 177 101 567 59 12 0 chr9 44558867 44558952 -97712492 + L1PA13 LINE L1 6078 6163 0 22 0 0 0 chr9 44559614 44559636 -97711808 + AT_rich Low_complexity Low_complexity 1 22 0 2102 119 13 7 chr9 44560252 44560671 -97710773 + AluSq SINE Alu 2 422 0 3035 242 38 11 chr9 44561412 44562173 -97709271 - L1 LINE L1 -944 5202 4380 2099 83 36 0 chr9 44562173 44562450 -97708994 - AluY SINE Alu -24 287 1 3035 242 38 11 chr9 44562450 44562714 -97708730 - L1 LINE L1 -1766 4380 4124 * 4571 228 90 27 chr9 44562710 44563095 -97708349 + L1M1 LINE L1 2917 3276 -4289 1734 181 58 0 chr9 44563095 44563421 -97708023 - MER7A DNA MER2_type 0 346 4 4571 228 90 27 chr9 44563421 44564905 -97706539 + L1M1 LINE L1 3276 4910 -2655 395 263 11 0 chr9 44565417 44565512 -97705932 - Zaphod DNA AcHobo -1 4030 3935 183 42 0 0 chr9 44566007 44566031 -97705413 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1316 227 25 108 chr9 44566247 44566278 -97705166 + MLT1D LTR MaLR 1 33 -472 2046 156 37 6 chr9 44566278 44566631 -97704813 + THE1B LTR MaLR 1 364 0 1316 227 25 108 chr9 44566631 44566884 -97704560 + MLT1D LTR MaLR 33 225 -280 1108 155 10 5 chr9 44566884 44567091 -97704353 - L1MA6 LINE L1 -6 6294 6087 1316 227 25 108 chr9 44567091 44567325 -97704119 + MLT1D LTR MaLR 225 477 -28 272 343 130 39 chr9 44567931 44568368 -97703076 - L2 LINE L2 -2248 1066 590 5490 32 0 9 chr9 44570412 44571172 -97700272 + SVA Other Other 624 1384 -2 271 188 0 47 chr9 44571172 44571236 -97700208 + LTR8A LTR ERV1 567 627 -100 690 241 29 23 chr9 44571342 44571516 -97699928 - MER45A DNA AcHobo -3 175 1 24 67 0 0 chr9 44571717 44571762 -97699682 + AT_rich Low_complexity Low_complexity 1 45 0 33 66 0 0 chr9 44571821 44571882 -97699562 + AT_rich Low_complexity Low_complexity 1 61 0 180 0 0 0 chr9 44572784 44572804 -97698640 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 936 336 50 7 chr9 44572834 44573250 -97698194 + LTR16B LTR ERVL 22 455 -9 1934 162 39 25 chr9 44574886 44575245 -97696199 - THE1B LTR MaLR 0 364 1 10566 111 29 5 chr9 44575245 44576789 -97694655 - THE1B-int LTR MaLR 0 1580 1 1935 171 28 22 chr9 44576789 44577151 -97694293 - THE1B LTR MaLR 0 364 1 310 232 127 70 chr9 44577252 44577394 -97694050 - MER69A DNA AcHobo -8 169 20 1007 247 5 0 chr9 44577406 44577629 -97693815 - MER58A DNA MER1_type 0 224 1 559 314 102 8 chr9 44580073 44580309 -97691135 - MIR SINE MIR 0 262 5 329 311 69 9 chr9 44580541 44580793 -97690651 - L1ME LINE L1 -582 5539 5272 48 43 0 0 chr9 44581026 44581095 -97690349 + AT_rich Low_complexity Low_complexity 1 69 0 21 36 0 0 chr9 44581165 44581193 -97690251 + AT_rich Low_complexity Low_complexity 1 28 0 27 0 0 0 chr9 44581397 44581424 -97690020 + AT_rich Low_complexity Low_complexity 1 27 0 1168 182 5 0 chr9 44581451 44581643 -97689801 + AluJb SINE Alu 1 193 -119 1680 205 129 91 chr9 44581657 44582559 -97688885 + LTR1B LTR ERV1 1 1016 -4 629 171 0 0 chr9 44582561 44582672 -97688772 + AluJb SINE Alu 188 298 -14 21 0 0 0 chr9 44582672 44582693 -97688751 + AT_rich Low_complexity Low_complexity 1 21 0 274 243 117 0 chr9 44583376 44583487 -97687957 - MER103 DNA DNA -12 154 31 733 237 81 86 chr9 44583489 44583885 -97687559 + MSTD LTR MaLR 3 396 0 180 325 168 29 chr9 44584175 44584384 -97687060 + MIR SINE MIR 25 262 0 200 268 12 0 chr9 44584486 44584568 -97686876 + (CATATA)n Simple_repeat Simple_repeat 5 87 0 1438 264 54 43 chr9 44585745 44586317 -97685127 - MLT1G LTR MaLR 0 577 13 22 70 0 0 chr9 44586600 44586643 -97684801 + AT_rich Low_complexity Low_complexity 1 43 0 34 99 0 0 chr9 44586832 44586943 -97684501 + AT_rich Low_complexity Low_complexity 1 111 0 21 0 0 0 chr9 44587386 44587407 -97684037 + AT_rich Low_complexity Low_complexity 1 21 0 257 348 68 22 chr9 44588233 44588589 -97682855 - L1ME LINE L1 -288 5876 5496 26 50 0 0 chr9 44588651 44588691 -97682753 + AT_rich Low_complexity Low_complexity 1 40 0 928 276 85 28 chr9 44588973 44589371 -97682073 - MLT1C LTR MaLR 0 467 47 206 366 89 19 chr9 44589463 44589676 -97681768 - L2 LINE L2 -90 3223 2996 702 287 302 22 chr9 44589749 44590179 -97681265 - L2 LINE L2 -747 2567 2259 236 71 48 0 chr9 44590179 44590221 -97681223 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 702 287 302 22 chr9 44590221 44590340 -97681104 - L2 LINE L2 -1055 2259 1864 29 70 0 0 chr9 44592327 44592384 -97679060 + AT_rich Low_complexity Low_complexity 1 57 0 4582 244 59 26 chr9 44592507 44595003 -97676441 + L1PBa LINE L1 3 1640 -5223 3886 206 26 11 chr9 44595103 44596619 -97674825 + L1P5 LINE L1 4205 5739 -415 552 129 0 0 chr9 44596720 44596813 -97674631 + L1PBa LINE L1 1705 1797 -5066 * 2429 195 61 16 chr9 44596799 44597358 -97674086 + L1PBa LINE L1 2079 2662 -4201 3788 230 31 16 chr9 44597376 44598375 -97673069 + L1 LINE L1 2959 3972 -2890 508 226 55 11 chr9 44598474 44598655 -97672789 + L1 LINE L1 3954 4142 -2720 1705 115 74 0 chr9 44598763 44599033 -97672411 + L1PB3 LINE L1 5854 6143 -11 27 0 0 0 chr9 44599130 44599157 -97672287 + AT_rich Low_complexity Low_complexity 1 27 0 1101 231 47 27 chr9 44599256 44599555 -97671889 - LTR68 LTR ERV1 -127 613 309 258 145 65 16 chr9 44599742 44599804 -97671640 - LTR68 LTR ERV1 -653 87 23 542 208 0 0 chr9 44599804 44599910 -97671534 + FRAM SINE Alu 63 168 -8 22 80 0 0 chr9 44600334 44600384 -97671060 + AT_rich Low_complexity Low_complexity 1 50 0 993 189 6 0 chr9 44601192 44601351 -97670093 + MER61D LTR ERV1 242 401 -100 967 182 69 139 chr9 44601351 44601861 -97669583 + MER61D-int LTR ERV1 195 886 -2596 * 5503 179 30 29 chr9 44601860 44602488 -97668956 + MER61D-int LTR ERV1 609 1235 -4033 2321 65 3 50 chr9 44602488 44602811 -97668633 + AluY SINE Alu 1 308 -3 5503 179 30 29 chr9 44602811 44604262 -97667182 + MER61D-int LTR ERV1 1235 2683 -2585 1969 148 27 33 chr9 44604262 44604628 -97666816 + THE1B LTR MaLR 1 364 0 5503 179 30 29 chr9 44604628 44605288 -97666156 + MER61D-int LTR ERV1 2683 4963 -305 1068 194 30 15 chr9 44605285 44605568 -97665876 + MER61D-int LTR ERV1 4524 5343 -1653 * 2834 148 11 19 chr9 44605678 44606117 -97665327 + MER61D-int LTR ERV1 3568 4009 -2987 225 0 0 0 chr9 44606117 44606142 -97665302 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 2834 148 11 19 chr9 44606142 44606414 -97665030 + MER61D-int LTR ERV1 4009 6995 -1 2670 165 32 28 chr9 44606415 44606735 -97664709 + MER61D LTR ERV1 1 325 -176 1914 145 3 0 chr9 44606735 44607024 -97664420 + AluSg SINE Alu 2 291 -19 2670 165 32 28 chr9 44607024 44607201 -97664243 + MER61D LTR ERV1 325 500 -1 873 192 19 123 chr9 44607576 44607884 -97663560 + MER93b LTR ERV1 98 373 0 2008 158 39 18 chr9 44607884 44608126 -97663318 + MER1B DNA MER1_type 1 253 -2459 1924 223 39 65 chr9 44608126 44608695 -97662749 - MLT2B3 LTR ERVL 0 554 1 2008 158 39 18 chr9 44608695 44608782 -97662662 + MER1B DNA MER1_type 253 337 -2 514 292 40 32 chr9 44609434 44609711 -97661733 + L1ME3 LINE L1 5884 6162 0 343 313 119 11 chr9 44610269 44610445 -97660999 - MLT1J LTR MaLR -279 232 38 226 288 158 56 chr9 44612168 44612453 -97658991 - MLT1J2 LTR MaLR 0 450 137 3914 161 79 42 chr9 44613219 44614090 -97657354 - MER4D LTR ERV1 0 903 1 821 301 47 23 chr9 44614097 44614439 -97657005 + LTR16B LTR ERVL 109 458 -6 2466 160 39 0 chr9 44614741 44615154 -97656290 + MER57B LTR ERV1 1 429 -5 215 347 28 0 chr9 44615450 44615522 -97655922 + L2 LINE L2 3193 3266 -47 205 274 0 0 chr9 44616882 44616944 -97654500 + A-rich Low_complexity Low_complexity 1 62 0 1070 268 47 70 chr9 44617237 44618104 -97653340 - L1MC4 LINE L1 -258 7550 6811 587 297 73 22 chr9 44618105 44618418 -97653026 - L1M4 LINE L1 -1768 4378 4050 393 278 21 21 chr9 44618436 44618720 -97652724 + L1MEc LINE L1 2034 2317 -4079 185 119 24 0 chr9 44618826 44618868 -97652576 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 270 327 114 24 chr9 44618876 44619130 -97652314 + L1MEc LINE L1 105 381 -6015 1830 161 66 20 chr9 44619133 44619481 -97651963 + THE1B LTR MaLR 1 364 0 258 320 81 36 chr9 44619499 44619746 -97651698 + L2 LINE L2 2933 3190 -123 2028 164 11 16 chr9 44619747 44620124 -97651320 + THE1C LTR MaLR 1 375 0 267 311 47 16 chr9 44620513 44620706 -97650738 - L1M4 LINE L1 -2598 3548 3350 1074 279 89 34 chr9 44620822 44621588 -97649856 - L1M4 LINE L1 -3070 3076 2269 30 27 0 0 chr9 44621614 44621651 -97649793 + AT_rich Low_complexity Low_complexity 1 37 0 579 259 20 10 chr9 44621653 44621854 -97649590 - L1MEc LINE L1 -1488 4727 4525 282 281 95 29 chr9 44621868 44622078 -97649366 - L1MEc LINE L1 -2040 4175 3952 682 278 73 25 chr9 44622085 44622649 -97648795 - L1MEc LINE L1 -2435 3780 3190 28 0 0 0 chr9 44622710 44622738 -97648706 + AT_rich Low_complexity Low_complexity 1 28 0 1012 207 11 0 chr9 44622750 44622929 -97648515 - MLT1A1 LTR MaLR -63 302 122 572 198 0 16 chr9 44622975 44623096 -97648348 - MLT1A1 LTR MaLR -246 119 1 454 227 91 8 chr9 44623207 44623339 -97648105 - L1MA3 LINE L1 0 6305 6163 316 280 24 16 chr9 44623356 44623481 -97647963 - L1MEc LINE L1 -3720 2495 2370 397 247 69 53 chr9 44623541 44623788 -97647656 - L1MEc LINE L1 -4099 2297 2047 345 244 0 0 chr9 44623826 44623908 -97647536 - L1MEc LINE L1 -4330 2066 1985 426 299 22 76 chr9 44624032 44624216 -97647228 - MER96 DNA MER1_type? 0 175 2 23 0 0 0 chr9 44624302 44624325 -97647119 + AT_rich Low_complexity Low_complexity 1 23 0 322 267 67 13 chr9 44624326 44624379 -97647065 - HAL1 LINE L1 -961 1546 1497 189 0 0 0 chr9 44624379 44624400 -97647044 + (TG)n Simple_repeat Simple_repeat 2 22 0 322 267 67 13 chr9 44624400 44624496 -97646948 - HAL1 LINE L1 -1010 1497 1389 365 269 108 24 chr9 44624613 44624910 -97646534 - L1MEc LINE L1 -5142 1254 933 703 325 13 10 chr9 44624951 44625265 -97646179 - L1MEc LINE L1 -5596 800 486 569 185 122 9 chr9 44625479 44625721 -97645723 - MLT1A1 LTR MaLR 0 390 1 1352 204 60 27 chr9 44626068 44626401 -97645043 + MER2 DNA MER2_type 1 344 0 188 292 79 22 chr9 44626849 44626938 -97644506 + L2 LINE L2 3175 3268 -4 1018 271 77 6 chr9 44628013 44628353 -97643091 - MLT1A1 LTR MaLR -1 364 1 25 0 0 0 chr9 44628730 44628755 -97642689 + AT_rich Low_complexity Low_complexity 1 25 0 2379 74 0 7 chr9 44630021 44630331 -97641113 - AluY SINE Alu -3 308 1 4340 78 18 19 chr9 44630609 44631223 -97640221 + L1PA7 LINE L1 5506 6118 -36 1663 63 18 0 chr9 44631223 44631438 -97640006 + L1PA8 LINE L1 5948 6172 0 317 332 71 37 chr9 44631451 44631776 -97639668 + L1MEd LINE L1 586 921 -5284 284 357 75 9 chr9 44632152 44632365 -97639079 + L2 LINE L2 3083 3309 -4 488 327 79 25 chr9 44632399 44632766 -97638678 + L1MEd LINE L1 1436 1822 -4574 1224 280 56 30 chr9 44632816 44633244 -97638200 - MER77 LTR ERV1 -6 599 161 554 228 134 35 chr9 44633264 44633466 -97637978 - MER77 LTR ERV1 -380 225 4 1519 264 43 48 chr9 44634941 44635609 -97635835 + L1M4 LINE L1 3573 4237 -1909 282 283 33 0 chr9 44635623 44635715 -97635729 + GA-rich Low_complexity Low_complexity 6 100 0 180 179 0 0 chr9 44636010 44636049 -97635395 + (CA)n Simple_repeat Simple_repeat 2 40 0 461 234 18 42 chr9 44636054 44636221 -97635223 - L1M4 LINE L1 -2383 3763 3601 * 3675 40 0 0 chr9 44636208 44636655 -97634789 - L1P LINE L1 -2143 4003 3557 5907 19 0 0 chr9 44636655 44637333 -97634111 + L1PA2 LINE L1 5389 6066 -89 687 267 106 45 chr9 44637482 44637778 -97633666 - L1M4 LINE L1 -2519 3627 3350 2028 140 0 0 chr9 44637778 44638086 -97633358 - AluSx SINE Alu -4 308 1 687 267 106 45 chr9 44638086 44638430 -97633014 - L1M4 LINE L1 -2796 3350 2948 50 31 0 0 chr9 44638813 44638877 -97632567 + AT_rich Low_complexity Low_complexity 1 64 0 2586 30 0 0 chr9 44639376 44639678 -97631766 + AluY SINE Alu 1 302 -9 24 32 0 0 chr9 44639825 44639856 -97631588 + AT_rich Low_complexity Low_complexity 1 31 0 24 53 0 0 chr9 44640204 44640242 -97631202 + AT_rich Low_complexity Low_complexity 1 38 0 480 18 0 0 chr9 44640750 44640807 -97630637 + (TAGA)n Simple_repeat Simple_repeat 1 57 0 22 0 0 0 chr9 44641488 44641510 -97629934 + AT_rich Low_complexity Low_complexity 1 22 0 1706 139 0 4 chr9 44641594 44641888 -97629556 + AluSx SINE Alu 35 327 0 22 35 0 0 chr9 44642867 44642896 -97628548 + AT_rich Low_complexity Low_complexity 1 29 0 2598 126 24 5 chr9 44643950 44644370 -97627074 + MSTA LTR MaLR 1 428 0 7624 195 66 10 chr9 44644370 44645933 -97625511 + MSTA-int LTR MaLR 1 1651 0 2370 155 21 16 chr9 44645933 44646359 -97625085 + MSTA LTR MaLR 1 428 0 1613 178 35 0 chr9 44646602 44646889 -97624555 + 7SLRNA srpRNA srpRNA 22 318 -2 22 0 0 0 chr9 44646988 44647010 -97624434 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chr9 44647165 44647201 -97624243 + AT_rich Low_complexity Low_complexity 1 36 0 207 114 0 0 chr9 44647681 44647716 -97623728 + (CA)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr9 44648606 44648627 -97622817 + AT_rich Low_complexity Low_complexity 1 21 0 216 214 0 0 chr9 44648693 44648735 -97622709 + A-rich Low_complexity Low_complexity 1 42 0 30 69 0 0 chr9 44649136 44649194 -97622250 + AT_rich Low_complexity Low_complexity 1 58 0 23 0 0 0 chr9 44649571 44649594 -97621850 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr9 44650510 44650536 -97620908 + AT_rich Low_complexity Low_complexity 1 26 0 30 0 0 0 chr9 44650787 44650817 -97620627 + AT_rich Low_complexity Low_complexity 1 30 0 1862 154 3 16 chr9 44650863 44651168 -97620276 - AluSg SINE Alu -9 301 1 1665 214 106 9 chr9 44651311 44651736 -97619708 - MER31B LTR ERV1 0 466 1 681 335 124 16 chr9 44653800 44654242 -97617202 + L2 LINE L2 2472 2961 -353 209 298 40 96 chr9 44654350 44654548 -97616896 + L2 LINE L2 3119 3305 -8 352 181 14 14 chr9 44654548 44654620 -97616824 - L1M4 LINE L1 -716 5462 5391 1623 108 4 50 chr9 44654702 44654960 -97616484 + THE1B LTR MaLR 119 364 0 1766 168 76 8 chr9 44654970 44655452 -97615992 + L1M4 LINE L1 5188 5698 -480 647 148 4 1 chr9 44655681 44655796 -97615648 - LTR12 LTR ERV1 0 714 73 233 247 34 22 chr9 44655799 44655888 -97615556 - LTR30 LTR ERV1 -80 642 553 901 153 81 94 chr9 44656002 44656237 -97615207 - LTR12 LTR ERV1 -480 234 3 312 315 112 63 chr9 44656248 44656721 -97614723 - L1MEd LINE L1 -5560 559 64 24 32 0 0 chr9 44658010 44658041 -97613403 + AT_rich Low_complexity Low_complexity 1 31 0 26 0 0 0 chr9 44658138 44658164 -97613280 + AT_rich Low_complexity Low_complexity 1 26 0 2525 68 0 0 chr9 44658640 44658951 -97612493 - AluY SINE Alu 0 311 1 245 309 90 5 chr9 44659865 44660053 -97611391 - HAL1 LINE L1 -814 1693 1490 480 309 56 13 chr9 44660072 44660305 -97611139 + HAL1 LINE L1 1491 1733 -774 1674 177 0 7 chr9 44661279 44661587 -97609857 + AluSx SINE Alu 1 306 0 4732 148 52 27 chr9 44661801 44662317 -97609127 - L1MA9 LINE L1 0 6312 5760 243 0 0 0 chr9 44662317 44662344 -97609100 + (TG)n Simple_repeat Simple_repeat 2 28 0 4732 148 52 27 chr9 44662344 44662784 -97608660 - L1MA9 LINE L1 -552 5760 5332 1841 167 42 31 chr9 44662784 44663144 -97608300 + THE1B LTR MaLR 1 364 0 10526 126 10 2 chr9 44663144 44664711 -97606733 + THE1B-int LTR MaLR 1 1580 0 2058 137 39 39 chr9 44664711 44665075 -97606369 + THE1B LTR MaLR 1 364 0 4574 194 70 24 chr9 44665085 44665927 -97605517 - L1MA9 LINE L1 -857 5289 4382 2094 98 36 0 chr9 44665927 44666204 -97605240 - AluY SINE Alu -24 287 1 4574 194 70 24 chr9 44666204 44666477 -97604967 - L1MA9 LINE L1 -1764 4382 4123 4842 229 95 33 chr9 44666501 44666857 -97604587 + L1M1 LINE L1 2940 3272 -4293 1679 181 61 3 chr9 44666857 44667183 -97604261 - MER7A DNA MER2_type 0 346 4 4842 229 95 33 chr9 44667183 44668804 -97602640 + L1M1 LINE L1 3272 5048 -2517 250 301 146 0 chr9 44668917 44669040 -97602404 - L1ME LINE L1 -607 5557 5417 191 326 150 18 chr9 44669058 44669285 -97602159 - L2 LINE L2 -129 3184 2928 982 206 10 19 chr9 44669332 44669541 -97601903 + Tigger6a DNA MER2_type 5 211 -872 1631 220 42 37 chr9 44669541 44669996 -97601448 - MLT1C LTR MaLR 0 467 11 * 2436 191 113 24 chr9 44669987 44670604 -97600840 + Tigger6a DNA MER2_type 216 887 -196 2365 93 0 0 chr9 44670604 44670915 -97600529 + AluY SINE Alu 1 311 0 1942 122 10 55 chr9 44673532 44673844 -97597600 + AluSx SINE Alu 1 298 -14 228 219 12 37 chr9 44673846 44673928 -97597516 - L1ME LINE L1 -806 5378 5299 2403 46 7 20 chr9 44675800 44676104 -97595340 - AluY SINE Alu -11 300 1 14734 132 91 13 chr9 44676523 44679037 -97592407 + L1M1 LINE L1 729 3438 -4127 266 380 38 20 chr9 44679289 44679459 -97591985 - MIR SINE MIR -75 187 7 2454 66 0 0 chr9 44679798 44680100 -97591344 - AluY SINE Alu -9 302 1 336 177 44 87 chr9 44681311 44681439 -97590005 + LTR48 LTR ERV1 540 623 -30 262 265 20 10 chr9 44681794 44681892 -97589552 - LTR41 LTR ERVL -672 101 3 2258 77 0 7 chr9 44682318 44682603 -97588841 + AluY SINE Alu 1 283 -28 668 24 24 0 chr9 44682603 44682688 -97588756 + (TATAA)n Simple_repeat Simple_repeat 4 90 0 22 0 0 0 chr9 44683038 44683060 -97588384 + AT_rich Low_complexity Low_complexity 1 22 0 2493 52 10 0 chr9 44683211 44683517 -97587927 - AluY SINE Alu -2 309 1 713 270 52 26 chr9 44683621 44683851 -97587593 + L2 LINE L2 2392 2627 -687 1066 228 24 62 chr9 44683857 44684146 -97587298 + MER70B LTR ERVL 4 281 -297 248 130 78 78 chr9 44685431 44685508 -97585936 + MER72 LTR ERV1 646 722 0 321 367 102 40 chr9 44685732 44686056 -97585388 + L1MEd LINE L1 223 566 -5553 719 164 109 6 chr9 44686180 44686345 -97585099 + L1MB2 LINE L1 5986 6167 -4 227 319 32 0 chr9 44686460 44686554 -97584890 + L1MEd LINE L1 2645 2741 -3388 2243 104 0 0 chr9 44686565 44686854 -97584590 + AluSc SINE Alu 1 289 -20 293 264 0 50 chr9 44686987 44687108 -97584336 + L1MEd LINE L1 2908 3022 -3107 313 275 99 42 chr9 44687271 44687765 -97583679 + L1M4 LINE L1 4881 5402 -744 186 71 0 0 chr9 44687826 44687854 -97583590 + (TG)n Simple_repeat Simple_repeat 2 29 0 2320 110 3 0 chr9 44688252 44688562 -97582882 - AluSp SINE Alu 0 313 3 203 209 23 0 chr9 44688658 44688701 -97582743 + CT-rich Low_complexity Low_complexity 1 44 0 906 259 122 22 chr9 44689088 44689490 -97581954 + LTR16A1 LTR ERVL 16 457 0 1940 142 0 35 chr9 44689721 44690032 -97581412 - AluSx SINE Alu -10 302 3 192 359 68 19 chr9 44690094 44690197 -97581247 + L2 LINE L2 3206 3313 0 239 292 93 6 chr9 44691567 44691728 -97579716 - HAL1 LINE L1 -814 1693 1519 408 300 70 13 chr9 44691774 44692004 -97579440 + HAL1 LINE L1 1491 1733 -774 1765 166 0 7 chr9 44692996 44693304 -97578140 + AluSx SINE Alu 1 306 0 4763 150 48 27 chr9 44693518 44694034 -97577410 - L1MA9 LINE L1 0 6312 5765 372 22 0 0 chr9 44694034 44694079 -97577365 + (TG)n Simple_repeat Simple_repeat 2 46 0 4763 150 48 27 chr9 44694079 44694523 -97576921 - L1MA9 LINE L1 -547 5765 5332 1846 167 45 31 chr9 44694523 44694882 -97576562 + THE1B LTR MaLR 1 364 0 10707 122 11 0 chr9 44694882 44696445 -97574999 + THE1B-int LTR MaLR 1 1580 0 2211 121 36 36 chr9 44696445 44696809 -97574635 + THE1B LTR MaLR 1 364 0 4811 196 65 16 chr9 44696819 44697667 -97573777 - L1MA9 LINE L1 -857 5289 4373 2083 91 40 0 chr9 44697667 44697943 -97573501 - AluY SINE Alu -24 287 1 4811 196 65 16 chr9 44697943 44698207 -97573237 - L1MA9 LINE L1 -1773 4373 4123 * 5309 224 84 30 chr9 44698202 44698592 -97572852 + L1M1 LINE L1 2917 3284 -4281 1802 191 27 0 chr9 44698592 44698927 -97572517 - MER7A DNA MER2_type -1 345 4 5309 224 84 30 chr9 44698927 44700606 -97570838 + L1M1 LINE L1 3284 5104 -2461 2928 191 25 0 chr9 44700729 44701257 -97570187 + Tigger1 DNA MER2_type 1 541 -1877 514 202 0 0 chr9 44701257 44701351 -97570093 - FLAM_A SINE Alu -48 94 1 729 275 12 0 chr9 44701437 44701608 -97569836 + MER90 LTR ERV1 56 228 -386 805 250 171 0 chr9 44701631 44701847 -97569597 + MER90 LTR ERV1 361 613 -1 708 212 101 40 chr9 44703508 44703706 -97567738 + MIR SINE MIR 2 211 -51 249 275 162 36 chr9 44703798 44703965 -97567479 - L2 LINE L2 -5 3308 3121 303 258 97 24 chr9 44704075 44704199 -97567245 - L1M4 LINE L1 -1328 4818 4686 315 235 281 5 chr9 44704257 44704438 -97567006 - MLT1G1 LTR MaLR -114 453 148 299 244 24 158 chr9 44704418 44704496 -97566948 - MLT1H LTR MaLR -342 213 126 * 1908 117 3 27 chr9 44704496 44704795 -97566649 + AluSc SINE Alu 1 292 -17 299 244 24 158 chr9 44704795 44704962 -97566482 - MLT1H LTR MaLR -429 126 1 1275 179 14 57 chr9 44705414 44705711 -97565733 - L1MB7 LINE L1 -170 6014 5731 375 262 8 63 chr9 44706053 44706179 -97565265 - MER21-int LTR ERV1 -55 4136 4018 1934 175 73 12 chr9 44706184 44706715 -97564729 - L1MB7 LINE L1 -439 5739 5169 2355 136 3 35 chr9 44706715 44707090 -97564354 - THE1B LTR MaLR 0 364 2 1934 175 73 12 chr9 44707090 44707163 -97564281 - L1MB7 LINE L1 -1009 5169 5102 243 91 18 73 chr9 44707165 44707220 -97564224 + MSTD LTR MaLR 1 52 -344 3538 139 25 11 chr9 44707220 44707832 -97563612 + L1MB3 LINE L1 5536 6155 -28 2549 158 35 12 chr9 44707884 44708315 -97563129 + MLT1C LTR MaLR 27 467 0 2392 261 45 38 chr9 44708330 44709068 -97562376 - MER21-int LTR ERV1 -1021 3170 2428 6976 178 24 25 chr9 44709097 44710267 -97561177 - MSTA-int LTR MaLR -354 1297 128 1905 154 0 19 chr9 44710267 44710585 -97560859 - AluSx SINE Alu 0 312 1 6976 178 24 25 chr9 44710585 44710713 -97560731 - MSTA-int LTR MaLR -1523 128 1 1680 155 163 39 chr9 44710713 44711094 -97560350 - MSTA LTR MaLR 0 428 1 437 313 74 62 chr9 44711293 44711629 -97559815 + L1MEd LINE L1 144 483 -5722 237 178 0 0 chr9 44711720 44711765 -97559679 + (TATATG)n Simple_repeat Simple_repeat 2 46 0 228 109 0 0 chr9 44711765 44711811 -97559633 - LTR66 LTR ERVL -171 439 394 597 309 109 96 chr9 44712121 44712538 -97558906 + L1MEd LINE L1 188 598 -5607 1221 106 0 0 chr9 44712538 44712718 -97558726 + (TA)n Simple_repeat Simple_repeat 1 180 0 597 309 109 96 chr9 44712718 44713174 -97558270 + L1MEd LINE L1 598 1072 -5133 463 234 3 1 chr9 44713178 44713295 -97558149 + L1M2 LINE L1 1640 1978 -4238 276 281 16 0 chr9 44713295 44713359 -97558085 + MER52A LTR ERV1 1 65 -1690 2461 233 152 14 chr9 44713670 44714300 -97557144 + MER52A LTR ERV1 61 777 -978 * 4803 166 38 26 chr9 44714276 44715109 -97556335 + MER52A LTR ERV1 913 1755 0 303 281 73 73 chr9 44715109 44715383 -97556061 + L1MEd LINE L1 1743 2016 -4380 451 243 3 1 chr9 44715655 44715772 -97555672 + L1M2 LINE L1 1640 1978 -4238 288 266 16 0 chr9 44715772 44715836 -97555608 + MER52A LTR ERV1 1 65 -1690 6246 206 201 16 chr9 44716147 44717578 -97553866 + MER52A LTR ERV1 61 1755 0 2937 235 78 41 chr9 44717578 44718167 -97553277 + L1MEd LINE L1 1743 2309 -3906 1918 123 16 32 chr9 44718167 44718477 -97552967 - AluSq SINE Alu -8 305 1 2937 235 78 41 chr9 44718477 44719281 -97552163 + L1MEd LINE L1 2309 3172 -3043 1937 123 3 3 chr9 44719281 44719565 -97551879 + AluSx SINE Alu 3 286 -26 2937 235 78 41 chr9 44719565 44719791 -97551653 + L1MEd LINE L1 3172 3388 -2827 280 132 75 0 chr9 44719788 44719841 -97551603 - L1MC3 LINE L1 -534 7251 7195 * 244 320 0 10 chr9 44719841 44719938 -97551506 - MLT1F1 LTR MaLR -436 131 36 512 158 173 0 chr9 44719941 44720074 -97551370 - L1MC3 LINE L1 -689 7096 6941 238 300 53 49 chr9 44720681 44720924 -97550520 - L2 LINE L2 -521 2793 2550 366 284 70 65 chr9 44720977 44721318 -97550126 - L2 LINE L2 -652 2662 2320 443 207 23 157 chr9 44721425 44721642 -97549802 - L1ME LINE L1 -359 5762 5575 257 239 210 18 chr9 44722747 44722896 -97548548 + MIR SINE MIR 18 144 -64 767 165 0 8 chr9 44724410 44724543 -97546901 + FLAM_C SINE Alu 2 133 0 291 259 74 51 chr9 44724705 44724903 -97546541 + L1ME4a LINE L1 5689 5887 -234 2224 247 32 40 chr9 44724939 44724992 -97546452 + L1M4c LINE L1 1609 1661 -4721 2139 102 0 23 chr9 44724992 44725296 -97546148 - AluSx SINE Alu -14 298 2 2224 247 32 40 chr9 44725296 44726731 -97544713 + L1M4c LINE L1 1661 3193 -3189 21 36 0 0 chr9 44727488 44727516 -97543928 + AT_rich Low_complexity Low_complexity 1 28 0 1142 241 41 37 chr9 44727517 44727988 -97543456 + L1M4c LINE L1 2005 2486 -3896 1294 61 0 0 chr9 44728113 44728276 -97543168 + AluSg SINE Alu 1 163 -147 234 187 28 75 chr9 44728337 44728444 -97543000 + (CCCCAA)n Simple_repeat Simple_repeat 1 102 0 22 21 0 62 chr9 44728893 44728917 -97542527 + AT_rich Low_complexity Low_complexity 1 22 -23 1755 126 47 4 chr9 44728917 44729077 -97542367 - AluSq SINE Alu -22 291 113 261 0 0 0 chr9 44729077 44729106 -97542338 + (TG)n Simple_repeat Simple_repeat 2 30 0 1755 126 47 4 chr9 44729106 44729222 -97542222 - AluSq SINE Alu -200 113 3 22 21 0 62 chr9 44729222 44729245 -97542199 + AT_rich Low_complexity Low_complexity 22 45 0 1373 182 29 22 chr9 44729388 44729663 -97541781 + AluJo SINE Alu 13 289 -23 39 74 0 0 chr9 44729825 44729906 -97541538 + AT_rich Low_complexity Low_complexity 1 81 0 513 316 104 36 chr9 44729921 44730327 -97541117 - L1MC/D LINE L1 -396 5725 5354 4564 252 28 24 chr9 44730411 44731022 -97540422 + L1PA15-16 LINE L1 1954 2561 -4288 2018 126 7 0 chr9 44731022 44731315 -97540129 - AluSx SINE Alu -17 295 1 4564 252 28 24 chr9 44731315 44732883 -97538561 + L1PA15-16 LINE L1 2561 4147 -2702 3388 190 29 3 chr9 44732891 44733507 -97537937 + MSTB-int LTR MaLR 1020 1651 0 1743 237 16 0 chr9 44733507 44733878 -97537566 + MSTB LTR MaLR 1 377 -49 2106 224 20 6 chr9 44733880 44734370 -97537074 + L1M4c LINE L1 3683 4179 -2203 1720 132 32 4 chr9 44734370 44734646 -97536798 + AluSx SINE Alu 2 286 -22 255 93 0 0 chr9 44734646 44734689 -97536755 + (CAAAC)n Simple_repeat Simple_repeat 2 44 0 341 183 0 14 chr9 44734696 44734767 -97536677 + L1M4c LINE L1 3005 3074 -3308 214 311 0 33 chr9 44735623 44735713 -97535731 + C-rich Low_complexity Low_complexity 4 90 0 565 231 67 87 chr9 44736949 44737673 -97533771 + HSREP522 Satellite telomeric 1 709 -123 256 274 76 61 chr9 44738974 44739171 -97532273 - L1MDb LINE L1 -5756 653 454 807 324 106 21 chr9 44739178 44739651 -97531793 - L1MDb LINE L1 -5793 616 104 24 0 0 0 chr9 44739778 44739802 -97531642 + AT_rich Low_complexity Low_complexity 1 24 0 1934 118 4 0 chr9 44740176 44740455 -97530989 - AluSc SINE Alu -19 290 11 235 208 0 0 chr9 44740698 44740746 -97530698 + MER67B LTR ERV1 38 85 -576 287 62 0 107 chr9 44740943 44741055 -97530389 + (CCCCCA)n Simple_repeat Simple_repeat 5 104 0 1100 142 38 28 chr9 44741517 44741729 -97529715 + AluJo SINE Alu 1 214 -98 581 241 47 70 chr9 44741832 44742089 -97529355 - MIR SINE MIR -7 255 1 219 293 104 19 chr9 44742375 44742481 -97528963 - L2 LINE L2 0 3272 3158 2252 83 0 3 chr9 44743152 44743452 -97527992 + AluSg SINE Alu 1 299 -11 372 333 23 33 chr9 44743455 44743594 -97527850 + MIR SINE MIR 28 160 -48 604 269 211 5 chr9 44743871 44744079 -97527365 + MIR SINE MIR 5 255 -7 297 329 12 0 chr9 44744620 44744705 -97526739 - MIR3 SINE MIR -30 178 93 206 125 0 0 chr9 44745369 44745401 -97526043 - MIR SINE MIR -10 252 221 374 314 21 14 chr9 44745674 44745814 -97525630 + MIR SINE MIR 35 175 -87 443 305 40 7 chr9 44746072 44746223 -97525221 + MIR3 SINE MIR 19 174 -34 231 226 19 0 chr9 44746473 44746526 -97524918 + L3b LINE CR1 1335 1388 -195 269 219 281 0 chr9 44747122 44747218 -97524226 + L2 LINE L2 3190 3312 -1 728 266 0 31 chr9 44747234 44747426 -97524018 + MIR SINE MIR 77 262 0 392 303 42 0 chr9 44747427 44747546 -97523898 - MIR SINE MIR -55 207 84 2699 157 7 4 chr9 44748784 44749248 -97522196 + TAR1 Satellite telomeric 1604 2068 -43 439 113 0 87 chr9 44749393 44749588 -97521856 + (TTAGGG)n Simple_repeat Simple_repeat 1 178 0 9558 224 11 36 chr9 44749644 44750384 -97521060 - L1M4 LINE L1 -927 5219 4461 1018 171 0 0 chr9 44750384 44750560 -97520884 - AluSp SINE Alu -2 311 136 9558 224 11 36 chr9 44750560 44752794 -97518650